Query 006909
Match_columns 626
No_of_seqs 865 out of 4687
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 12:10:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 2.3E-46 7.9E-51 412.9 42.5 409 172-619 50-609 (611)
2 1vyh_C Platelet-activating fac 100.0 7.2E-45 2.5E-49 380.9 35.0 379 79-567 2-409 (410)
3 1nr0_A Actin interacting prote 100.0 5.3E-43 1.8E-47 386.0 37.2 379 179-620 16-566 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 3.5E-42 1.2E-46 377.2 39.9 411 173-624 49-542 (577)
5 2ymu_A WD-40 repeat protein; u 100.0 2.4E-42 8E-47 378.6 36.5 360 172-618 212-577 (577)
6 3ow8_A WD repeat-containing pr 100.0 1E-39 3.5E-44 329.9 34.9 289 174-568 25-320 (321)
7 2ynn_A Coatomer subunit beta'; 100.0 1.4E-39 4.9E-44 326.5 35.3 252 171-475 3-261 (304)
8 1got_B GT-beta; complex (GTP-b 100.0 5E-39 1.7E-43 327.9 37.8 287 171-566 45-340 (340)
9 3frx_A Guanine nucleotide-bind 100.0 4.2E-39 1.4E-43 325.3 35.8 303 171-570 7-318 (319)
10 3sfz_A APAF-1, apoptotic pepti 100.0 9.1E-39 3.1E-43 381.5 41.7 387 175-620 609-1157(1249)
11 2pbi_B Guanine nucleotide-bind 100.0 5.8E-38 2E-42 321.8 38.0 287 172-566 55-354 (354)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 4E-38 1.4E-42 321.8 34.4 305 171-570 5-336 (345)
13 3iz6_a 40S ribosomal protein R 100.0 3.6E-39 1.2E-43 334.2 26.6 299 170-570 55-376 (380)
14 2xzm_R RACK1; ribosome, transl 100.0 1.4E-37 4.7E-42 317.7 35.8 310 171-570 11-341 (343)
15 3mkq_A Coatomer beta'-subunit; 100.0 7.8E-38 2.7E-42 357.1 37.8 343 172-569 4-386 (814)
16 1pgu_A Actin interacting prote 100.0 3.1E-37 1E-41 340.3 40.6 413 172-620 54-613 (615)
17 2oaj_A Protein SNI1; WD40 repe 100.0 2.9E-38 9.8E-43 361.3 32.2 244 178-471 14-310 (902)
18 4g56_B MGC81050 protein; prote 100.0 8.9E-38 3E-42 320.7 32.3 289 177-526 38-341 (357)
19 4ery_A WD repeat-containing pr 100.0 1E-36 3.5E-41 306.7 37.4 252 170-474 12-269 (312)
20 1erj_A Transcriptional repress 100.0 5.8E-37 2E-41 319.1 35.5 314 179-570 62-390 (393)
21 4gqb_B Methylosome protein 50; 100.0 2.8E-37 9.4E-42 314.7 31.7 295 178-527 27-330 (344)
22 1vyh_C Platelet-activating fac 100.0 2.7E-37 9.4E-42 323.4 32.3 285 260-619 100-409 (410)
23 3sfz_A APAF-1, apoptotic pepti 100.0 3.1E-37 1.1E-41 368.2 37.2 403 172-619 734-1247(1249)
24 2oaj_A Protein SNI1; WD40 repe 100.0 2E-37 6.7E-42 354.3 32.0 383 179-619 56-659 (902)
25 1r5m_A SIR4-interacting protei 100.0 3.7E-37 1.2E-41 323.1 31.1 342 178-621 42-425 (425)
26 2hes_X YDR267CP; beta-propelle 100.0 2.8E-36 9.5E-41 306.2 33.7 251 171-473 4-280 (330)
27 1pgu_A Actin interacting prote 100.0 9.8E-37 3.3E-41 336.3 31.8 243 179-474 16-284 (615)
28 4aow_A Guanine nucleotide-bind 100.0 4.9E-36 1.7E-40 305.0 34.1 304 171-570 28-338 (340)
29 3ow8_A WD repeat-containing pr 100.0 9.1E-36 3.1E-40 301.0 35.1 245 174-472 73-320 (321)
30 4gqb_B Methylosome protein 50; 100.0 1.6E-35 5.3E-40 301.8 35.9 247 179-475 80-333 (344)
31 2pm7_B Protein transport prote 100.0 1.9E-35 6.5E-40 295.3 34.7 252 175-473 3-285 (297)
32 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.2E-36 2.1E-40 305.6 31.8 317 259-621 6-335 (345)
33 2pm9_A Protein WEB1, protein t 100.0 2.1E-36 7.3E-41 316.9 29.1 345 180-570 11-415 (416)
34 1got_B GT-beta; complex (GTP-b 100.0 2.5E-35 8.5E-40 300.5 35.6 250 173-470 89-340 (340)
35 2ynn_A Coatomer subunit beta'; 100.0 1.2E-35 4.2E-40 297.8 31.5 288 259-619 4-300 (304)
36 3zwl_B Eukaryotic translation 100.0 5.1E-35 1.7E-39 300.6 35.0 304 173-570 24-347 (369)
37 2pbi_B Guanine nucleotide-bind 100.0 3.4E-35 1.2E-39 301.2 31.6 288 259-618 55-354 (354)
38 3dm0_A Maltose-binding peripla 100.0 5.9E-35 2E-39 327.0 36.0 312 171-568 372-692 (694)
39 4e54_B DNA damage-binding prot 100.0 2.8E-35 9.6E-40 310.8 29.2 296 172-570 110-431 (435)
40 3v7d_B Cell division control p 100.0 2.2E-34 7.4E-39 306.6 35.4 322 172-618 112-460 (464)
41 3mkq_A Coatomer beta'-subunit; 100.0 8.1E-35 2.8E-39 332.1 33.9 372 172-620 46-504 (814)
42 3frx_A Guanine nucleotide-bind 100.0 4.8E-34 1.6E-38 288.2 35.3 245 174-473 58-317 (319)
43 2xzm_R RACK1; ribosome, transl 100.0 3.4E-34 1.2E-38 292.5 33.3 246 174-474 69-341 (343)
44 1gxr_A ESG1, transducin-like e 100.0 4.4E-35 1.5E-39 297.2 26.6 317 180-567 8-335 (337)
45 4g56_B MGC81050 protein; prote 100.0 3.5E-34 1.2E-38 293.9 33.4 248 177-474 90-344 (357)
46 2j04_B YDR362CP, TAU91; beta p 100.0 1.8E-35 6E-40 316.8 24.5 289 262-569 201-517 (524)
47 3dwl_C Actin-related protein 2 100.0 9.9E-36 3.4E-40 307.8 21.1 335 177-567 7-377 (377)
48 3iz6_a 40S ribosomal protein R 100.0 2E-34 6.9E-39 298.5 29.7 264 172-474 99-376 (380)
49 3jrp_A Fusion protein of prote 100.0 1.2E-34 4.2E-39 299.1 27.8 255 173-474 3-288 (379)
50 3vl1_A 26S proteasome regulato 100.0 9.5E-35 3.2E-39 305.0 27.1 333 182-569 57-419 (420)
51 4a11_B DNA excision repair pro 100.0 1E-33 3.5E-38 295.2 33.4 351 171-620 33-404 (408)
52 3bg1_A Protein SEC13 homolog; 100.0 1.8E-34 6.1E-39 290.9 26.6 249 175-473 7-293 (316)
53 1erj_A Transcriptional repress 100.0 1.7E-33 5.9E-38 292.9 34.5 249 179-473 121-389 (393)
54 1sq9_A Antiviral protein SKI8; 100.0 4.6E-34 1.6E-38 297.2 29.3 318 172-570 7-396 (397)
55 2hes_X YDR267CP; beta-propelle 100.0 2.3E-33 7.7E-38 284.7 32.7 254 179-473 56-328 (330)
56 3ei3_B DNA damage-binding prot 100.0 2E-33 6.7E-38 291.3 32.8 281 170-501 62-370 (383)
57 4e54_B DNA damage-binding prot 100.0 8.8E-34 3E-38 299.3 29.5 302 261-620 112-429 (435)
58 1gxr_A ESG1, transducin-like e 100.0 1.7E-32 5.8E-37 278.2 37.8 273 178-515 48-327 (337)
59 3i2n_A WD repeat-containing pr 100.0 5.2E-34 1.8E-38 292.0 25.9 308 174-570 11-354 (357)
60 4ery_A WD repeat-containing pr 100.0 1.8E-32 6.2E-37 275.7 35.4 249 173-472 57-311 (312)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-32 4.1E-37 291.5 34.7 322 172-623 109-444 (445)
62 3k26_A Polycomb protein EED; W 100.0 9.1E-34 3.1E-38 291.1 25.1 300 176-568 13-365 (366)
63 2pm9_A Protein WEB1, protein t 100.0 7.2E-33 2.5E-37 290.0 31.1 249 179-475 65-339 (416)
64 1k8k_C P40, ARP2/3 complex 41 100.0 2.1E-32 7.3E-37 281.8 33.5 251 177-473 4-274 (372)
65 3dw8_B Serine/threonine-protei 100.0 5.5E-33 1.9E-37 293.9 29.8 258 179-474 26-374 (447)
66 3gre_A Serine/threonine-protei 100.0 1.8E-33 6.2E-38 297.0 25.6 329 172-566 53-437 (437)
67 3f3f_A Nucleoporin SEH1; struc 100.0 3.3E-32 1.1E-36 276.7 33.3 255 173-474 3-338 (351)
68 3zwl_B Eukaryotic translation 100.0 2.8E-32 9.7E-37 280.1 32.7 306 261-621 25-346 (369)
69 2j04_A TAU60, YPL007P, hypothe 100.0 1.3E-33 4.3E-38 294.8 22.6 307 179-557 13-350 (588)
70 3gre_A Serine/threonine-protei 100.0 3.4E-33 1.2E-37 294.9 24.8 281 254-570 48-360 (437)
71 3jro_A Fusion protein of prote 100.0 7.7E-33 2.6E-37 311.9 29.0 254 174-474 2-286 (753)
72 3ei3_B DNA damage-binding prot 100.0 3.5E-32 1.2E-36 281.9 31.3 294 259-569 64-382 (383)
73 4aow_A Guanine nucleotide-bind 100.0 4.8E-32 1.7E-36 275.5 31.4 293 261-619 31-335 (340)
74 4h5i_A Guanine nucleotide-exch 100.0 9.4E-32 3.2E-36 276.6 33.2 203 266-474 131-344 (365)
75 3mmy_A MRNA export factor; mRN 100.0 1.2E-31 4.1E-36 275.3 33.3 293 170-525 28-346 (368)
76 3odt_A Protein DOA1; ubiquitin 100.0 2.6E-31 9E-36 266.5 35.0 284 168-526 5-294 (313)
77 3vl1_A 26S proteasome regulato 100.0 7E-32 2.4E-36 283.1 31.4 286 174-515 91-409 (420)
78 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-31 4.1E-36 276.2 31.4 206 264-474 4-234 (372)
79 1yfq_A Cell cycle arrest prote 100.0 1.2E-31 4.2E-36 272.8 29.9 247 176-474 6-283 (342)
80 1r5m_A SIR4-interacting protei 100.0 2.8E-31 9.4E-36 278.3 32.2 289 178-526 105-423 (425)
81 4aez_A CDC20, WD repeat-contai 100.0 1.7E-31 5.9E-36 278.6 30.3 283 178-570 88-381 (401)
82 3dm0_A Maltose-binding peripla 100.0 5.4E-31 1.8E-35 294.9 35.3 244 174-473 423-693 (694)
83 3k26_A Polycomb protein EED; W 100.0 1.6E-31 5.4E-36 274.4 28.0 246 179-473 67-366 (366)
84 3dwl_C Actin-related protein 2 100.0 7.9E-32 2.7E-36 278.5 25.0 243 263-512 6-279 (377)
85 4gga_A P55CDC, cell division c 100.0 2E-30 6.8E-35 272.3 35.9 282 183-570 107-396 (420)
86 3i2n_A WD repeat-containing pr 100.0 5.3E-31 1.8E-35 269.6 28.9 249 179-474 63-354 (357)
87 2j04_B YDR362CP, TAU91; beta p 100.0 4.3E-31 1.5E-35 282.8 29.2 305 281-622 175-518 (524)
88 1sq9_A Antiviral protein SKI8; 100.0 8.3E-31 2.8E-35 272.6 29.8 258 173-474 54-396 (397)
89 4ggc_A P55CDC, cell division c 100.0 7.5E-30 2.6E-34 256.7 34.1 281 184-570 28-316 (318)
90 3v7d_B Cell division control p 100.0 1.4E-29 4.6E-34 269.5 36.7 245 171-476 152-424 (464)
91 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-30 3.7E-35 272.7 27.7 255 173-474 73-343 (402)
92 4a11_B DNA excision repair pro 100.0 6.9E-31 2.4E-35 273.8 25.3 295 259-621 34-365 (408)
93 2xyi_A Probable histone-bindin 100.0 4.5E-30 1.6E-34 270.4 31.1 257 177-474 124-411 (430)
94 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-29 3.8E-34 267.9 33.9 281 178-570 130-415 (435)
95 4aez_A CDC20, WD repeat-contai 100.0 1.2E-29 4.1E-34 264.7 33.2 240 179-474 132-381 (401)
96 4gga_A P55CDC, cell division c 100.0 2.4E-29 8.4E-34 264.0 34.1 242 177-474 143-396 (420)
97 3odt_A Protein DOA1; ubiquitin 100.0 5.7E-29 2E-33 249.4 35.4 247 172-474 50-297 (313)
98 2pm7_B Protein transport prote 100.0 2.8E-29 9.6E-34 250.5 32.8 252 262-526 3-283 (297)
99 1yfq_A Cell cycle arrest prote 100.0 1.8E-30 6E-35 264.3 23.8 291 264-618 7-321 (342)
100 3bg1_A Protein SEC13 homolog; 100.0 1.7E-30 5.8E-35 261.8 21.9 254 262-569 7-293 (316)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 3.9E-29 1.3E-33 260.9 31.8 275 182-511 35-330 (402)
102 3vu4_A KMHSV2; beta-propeller 100.0 3.3E-29 1.1E-33 256.7 28.3 308 175-570 13-337 (355)
103 3f3f_A Nucleoporin SEH1; struc 100.0 5E-29 1.7E-33 253.3 28.3 298 262-570 5-338 (351)
104 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.2E-28 2.1E-32 255.3 37.5 276 171-516 149-429 (445)
105 4ggc_A P55CDC, cell division c 100.0 9.7E-28 3.3E-32 241.2 33.7 242 177-474 63-316 (318)
106 3dw8_B Serine/threonine-protei 100.0 1.3E-27 4.5E-32 252.6 34.6 203 266-473 26-315 (447)
107 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.9E-28 1.7E-32 256.5 31.0 280 181-471 4-337 (450)
108 1p22_A F-BOX/WD-repeat protein 100.0 4.4E-28 1.5E-32 255.6 29.7 240 171-475 163-416 (435)
109 3lrv_A PRE-mRNA-splicing facto 100.0 8.4E-29 2.9E-33 252.5 23.0 235 184-474 39-293 (343)
110 3jrp_A Fusion protein of prote 100.0 1.1E-27 3.7E-32 246.9 30.5 252 260-526 3-285 (379)
111 2j04_A TAU60, YPL007P, hypothe 100.0 1.7E-28 5.9E-33 256.3 23.0 228 175-472 46-296 (588)
112 3mmy_A MRNA export factor; mRN 100.0 3.1E-28 1.1E-32 249.8 24.5 301 258-621 29-346 (368)
113 4gq1_A NUP37; propeller, trans 100.0 2.1E-28 7.3E-33 254.3 21.6 254 178-472 86-388 (393)
114 1l0q_A Surface layer protein; 100.0 1.2E-25 4E-30 233.3 36.7 252 194-501 3-261 (391)
115 3jro_A Fusion protein of prote 100.0 1.2E-26 4E-31 261.5 30.4 207 262-474 3-239 (753)
116 3bws_A Protein LP49; two-domai 100.0 5.3E-26 1.8E-30 239.3 32.7 275 176-512 118-418 (433)
117 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.3E-26 1.8E-30 240.8 31.4 248 176-473 97-391 (450)
118 3vu4_A KMHSV2; beta-propeller 99.9 3E-26 1E-30 234.7 26.2 197 259-474 10-228 (355)
119 4h5i_A Guanine nucleotide-exch 99.9 3.3E-26 1.1E-30 235.2 25.9 198 178-430 130-342 (365)
120 2xyi_A Probable histone-bindin 99.9 1.4E-25 4.7E-30 236.1 28.2 255 262-526 122-408 (430)
121 4gq1_A NUP37; propeller, trans 99.9 2.3E-26 7.9E-31 239.0 21.9 208 266-474 87-349 (393)
122 1l0q_A Surface layer protein; 99.9 1.2E-24 4.1E-29 225.6 34.1 244 173-474 24-276 (391)
123 3bws_A Protein LP49; two-domai 99.9 7.9E-25 2.7E-29 230.4 32.0 242 176-473 164-432 (433)
124 3lrv_A PRE-mRNA-splicing facto 99.9 1.2E-25 3.9E-30 229.2 22.3 242 181-473 76-333 (343)
125 2w18_A PALB2, fancn, partner a 99.9 1.4E-24 4.6E-29 213.3 24.5 198 266-471 134-355 (356)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.5E-24 8.7E-29 225.0 25.4 304 181-550 62-410 (415)
127 1k32_A Tricorn protease; prote 99.9 4.7E-24 1.6E-28 249.2 25.6 371 175-620 197-636 (1045)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.3E-23 4.5E-28 219.6 26.1 264 175-507 111-410 (415)
129 2w18_A PALB2, fancn, partner a 99.9 1.1E-23 3.6E-28 207.0 23.1 215 180-429 110-355 (356)
130 1nir_A Nitrite reductase; hemo 99.9 1.1E-22 3.6E-27 219.4 29.6 325 188-570 144-515 (543)
131 2ecf_A Dipeptidyl peptidase IV 99.9 4.2E-23 1.4E-27 232.8 26.2 342 181-568 36-458 (741)
132 1k32_A Tricorn protease; prote 99.9 1.9E-23 6.5E-28 244.1 24.0 406 174-621 45-502 (1045)
133 1nir_A Nitrite reductase; hemo 99.9 7.1E-22 2.4E-26 213.0 27.9 333 276-621 145-514 (543)
134 1ri6_A Putative isomerase YBHE 99.9 4.7E-21 1.6E-25 194.3 27.9 249 179-472 35-307 (343)
135 1xfd_A DIP, dipeptidyl aminope 99.9 9.8E-22 3.4E-26 220.9 24.5 311 183-555 18-427 (723)
136 2z3z_A Dipeptidyl aminopeptida 99.9 4.3E-22 1.5E-26 223.3 21.1 282 268-570 81-436 (706)
137 3vgz_A Uncharacterized protein 99.9 5.4E-20 1.9E-24 187.4 30.9 272 180-514 39-333 (353)
138 2ecf_A Dipeptidyl peptidase IV 99.9 2.8E-21 9.5E-26 217.9 22.4 325 268-621 36-459 (741)
139 3u4y_A Uncharacterized protein 99.9 7.1E-20 2.4E-24 185.0 30.3 238 187-475 3-254 (331)
140 3u4y_A Uncharacterized protein 99.9 6E-20 2E-24 185.5 29.5 248 175-474 34-305 (331)
141 2ojh_A Uncharacterized protein 99.9 1.4E-20 4.7E-25 186.2 24.2 203 262-474 35-259 (297)
142 2ojh_A Uncharacterized protein 99.9 2.2E-20 7.5E-25 184.7 23.2 234 176-464 36-293 (297)
143 1ri6_A Putative isomerase YBHE 99.9 1.6E-19 5.6E-24 182.9 27.5 204 266-473 35-262 (343)
144 2z3z_A Dipeptidyl aminopeptida 99.9 1.8E-19 6E-24 202.0 29.3 269 181-503 81-420 (706)
145 3hfq_A Uncharacterized protein 99.8 4E-19 1.4E-23 180.9 28.1 249 179-472 37-316 (347)
146 3o4h_A Acylamino-acid-releasin 99.8 8.7E-20 3E-24 199.7 23.7 259 180-503 20-301 (582)
147 1xfd_A DIP, dipeptidyl aminope 99.8 4.1E-19 1.4E-23 199.6 29.7 280 174-506 50-432 (723)
148 1z68_A Fibroblast activation p 99.8 3.9E-20 1.3E-24 207.8 20.6 330 186-570 20-444 (719)
149 1pby_B Quinohemoprotein amine 99.8 3.6E-19 1.2E-23 179.9 22.6 250 194-501 2-297 (337)
150 2oit_A Nucleoporin 214KDA; NH2 99.8 3.2E-19 1.1E-23 187.0 22.2 259 180-472 35-332 (434)
151 1pby_B Quinohemoprotein amine 99.8 5.3E-19 1.8E-23 178.6 22.8 234 183-474 35-311 (337)
152 3hfq_A Uncharacterized protein 99.8 3.1E-18 1.1E-22 174.3 25.8 202 266-473 37-271 (347)
153 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-18 3.7E-23 196.3 23.2 243 183-475 18-355 (740)
154 3scy_A Hypothetical bacterial 99.8 3.5E-17 1.2E-21 167.5 32.1 247 180-472 48-336 (361)
155 2oit_A Nucleoporin 214KDA; NH2 99.8 8E-18 2.8E-22 176.4 25.8 170 179-383 90-280 (434)
156 3pe7_A Oligogalacturonate lyas 99.8 3.2E-18 1.1E-22 176.9 22.5 249 174-474 23-330 (388)
157 1jmx_B Amine dehydrogenase; ox 99.8 4.8E-18 1.6E-22 172.6 23.3 235 186-474 4-326 (349)
158 3vgz_A Uncharacterized protein 99.8 4.1E-17 1.4E-21 166.0 28.7 235 182-463 89-334 (353)
159 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.1E-17 1.1E-21 168.2 23.2 248 180-474 38-342 (365)
160 1z68_A Fibroblast activation p 99.8 4.5E-18 1.5E-22 190.9 16.0 197 273-474 20-292 (719)
161 1q7f_A NHL, brain tumor CG1071 99.7 2.2E-15 7.6E-20 148.6 32.2 246 178-473 26-280 (286)
162 3scy_A Hypothetical bacterial 99.7 1.4E-15 5E-20 155.4 29.4 202 267-472 48-290 (361)
163 3o4h_A Acylamino-acid-releasin 99.7 1.8E-16 6.1E-21 173.3 21.5 236 175-473 57-315 (582)
164 1jmx_B Amine dehydrogenase; ox 99.7 2.9E-16 1E-20 159.3 21.2 189 274-474 5-285 (349)
165 3c5m_A Oligogalacturonate lyas 99.7 2.1E-16 7.3E-21 163.4 17.7 236 182-475 36-331 (396)
166 3pe7_A Oligogalacturonate lyas 99.7 6.8E-16 2.3E-20 159.4 20.7 297 258-569 20-382 (388)
167 3azo_A Aminopeptidase; POP fam 99.7 2.3E-15 8E-20 167.1 26.1 247 174-474 16-326 (662)
168 2oiz_A Aromatic amine dehydrog 99.7 4.5E-15 1.5E-19 151.6 25.0 249 175-474 45-335 (361)
169 1jof_A Carboxy-CIS,CIS-muconat 99.7 7.3E-15 2.5E-19 150.5 25.2 229 268-503 39-329 (365)
170 3fvz_A Peptidyl-glycine alpha- 99.7 2.9E-14 1E-18 143.7 28.5 200 266-473 88-322 (329)
171 2dg1_A DRP35, lactonase; beta 99.6 5.2E-13 1.8E-17 134.6 32.0 242 175-464 38-301 (333)
172 3e5z_A Putative gluconolactona 99.6 2E-13 7E-18 135.2 28.4 239 175-474 21-287 (296)
173 2dg1_A DRP35, lactonase; beta 99.6 8.1E-14 2.8E-18 140.6 23.8 235 182-473 6-263 (333)
174 2xdw_A Prolyl endopeptidase; a 99.6 2.1E-13 7.2E-18 152.5 27.9 242 179-475 122-416 (710)
175 2oiz_A Aromatic amine dehydrog 99.6 1.8E-13 6E-18 139.7 24.6 267 262-550 45-360 (361)
176 1rwi_B Serine/threonine-protei 99.6 5.5E-13 1.9E-17 129.9 27.1 238 183-474 25-265 (270)
177 4a5s_A Dipeptidyl peptidase 4 99.6 2.1E-13 7.3E-18 153.1 27.5 267 184-504 64-436 (740)
178 3c5m_A Oligogalacturonate lyas 99.6 7.6E-15 2.6E-19 151.7 14.0 219 270-500 37-299 (396)
179 1qks_A Cytochrome CD1 nitrite 99.6 2.3E-12 7.9E-17 138.4 31.5 326 191-570 165-539 (567)
180 2gop_A Trilobed protease; beta 99.6 7.4E-13 2.5E-17 134.2 26.4 183 269-473 59-291 (347)
181 2bkl_A Prolyl endopeptidase; m 99.6 1.3E-13 4.5E-18 153.7 21.3 242 179-475 118-399 (695)
182 2z2n_A Virginiamycin B lyase; 99.6 2E-11 6.9E-16 120.5 34.6 239 177-472 10-254 (299)
183 2gop_A Trilobed protease; beta 99.5 6.2E-13 2.1E-17 134.8 23.8 220 182-472 59-330 (347)
184 3azo_A Aminopeptidase; POP fam 99.5 2.1E-13 7E-18 151.4 21.8 202 267-474 128-370 (662)
185 3fvz_A Peptidyl-glycine alpha- 99.5 2.2E-12 7.4E-17 130.0 26.8 204 268-475 23-279 (329)
186 3dsm_A Uncharacterized protein 99.5 2.1E-12 7.1E-17 130.0 26.0 233 182-472 44-301 (328)
187 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1E-11 3.6E-16 123.7 29.5 245 180-473 16-299 (314)
188 1q7f_A NHL, brain tumor CG1071 99.5 6.1E-12 2.1E-16 123.8 26.9 200 265-473 26-238 (286)
189 1qks_A Cytochrome CD1 nitrite 99.5 1.6E-11 5.6E-16 131.9 30.9 286 278-570 165-478 (567)
190 2xdw_A Prolyl endopeptidase; a 99.5 1.3E-11 4.5E-16 137.9 28.1 201 266-474 122-369 (710)
191 2bkl_A Prolyl endopeptidase; m 99.5 3.9E-12 1.3E-16 141.8 23.5 195 266-472 118-348 (695)
192 3dsm_A Uncharacterized protein 99.5 3.7E-11 1.3E-15 120.8 28.5 193 269-476 44-256 (328)
193 3no2_A Uncharacterized protein 99.4 2E-11 6.9E-16 119.2 24.5 212 192-461 4-231 (276)
194 2qc5_A Streptogramin B lactona 99.4 4.3E-10 1.5E-14 110.9 34.2 238 179-472 17-259 (300)
195 3no2_A Uncharacterized protein 99.4 1.8E-11 6E-16 119.7 23.5 217 277-502 3-231 (276)
196 2z2n_A Virginiamycin B lyase; 99.4 2.6E-10 9E-15 112.4 32.2 237 180-474 55-296 (299)
197 3e5z_A Putative gluconolactona 99.4 2.2E-11 7.4E-16 120.5 23.9 198 259-473 18-246 (296)
198 1yr2_A Prolyl oligopeptidase; 99.4 1.2E-11 4.2E-16 138.8 24.0 240 179-474 160-442 (741)
199 1rwi_B Serine/threonine-protei 99.4 7.2E-11 2.5E-15 114.8 24.4 195 270-474 25-223 (270)
200 1xip_A Nucleoporin NUP159; bet 99.4 1.8E-11 6.2E-16 124.0 18.1 187 183-417 39-230 (388)
201 2mad_H Methylamine dehydrogena 99.4 1.8E-09 6.3E-14 110.1 32.8 245 186-475 70-352 (373)
202 3hrp_A Uncharacterized protein 99.3 4.5E-10 1.5E-14 116.3 28.3 239 182-472 131-409 (409)
203 3g4e_A Regucalcin; six bladed 99.3 1.1E-09 3.7E-14 108.3 29.1 229 179-462 10-261 (297)
204 3dr2_A Exported gluconolactona 99.3 6.5E-10 2.2E-14 110.4 26.2 234 176-470 39-303 (305)
205 2qc5_A Streptogramin B lactona 99.3 2.8E-09 9.5E-14 105.0 30.7 235 180-472 60-299 (300)
206 1yr2_A Prolyl oligopeptidase; 99.3 3.5E-10 1.2E-14 126.9 26.3 194 267-472 161-392 (741)
207 3iuj_A Prolyl endopeptidase; h 99.3 2.9E-10 9.8E-15 126.5 24.0 239 179-474 126-406 (693)
208 3sjl_D Methylamine dehydrogena 99.3 7.6E-10 2.6E-14 111.6 24.6 255 187-496 38-343 (386)
209 2ghs_A AGR_C_1268P; regucalcin 99.3 2.9E-09 9.9E-14 106.7 28.6 224 183-462 50-291 (326)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 3.1E-09 1.1E-13 105.6 28.5 200 263-474 12-257 (314)
211 3g4e_A Regucalcin; six bladed 99.2 2.7E-09 9.1E-14 105.5 26.2 196 268-474 12-230 (297)
212 3sjl_D Methylamine dehydrogena 99.2 1E-09 3.5E-14 110.7 22.6 257 173-475 71-365 (386)
213 2mad_H Methylamine dehydrogena 99.2 1.5E-08 5.1E-13 103.3 31.6 215 273-496 70-330 (373)
214 2qe8_A Uncharacterized protein 99.2 1.1E-09 3.9E-14 110.6 22.8 245 182-470 17-318 (343)
215 3hrp_A Uncharacterized protein 99.2 3.4E-09 1.2E-13 109.6 26.2 202 269-474 131-355 (409)
216 1xip_A Nucleoporin NUP159; bet 99.2 1.6E-09 5.4E-14 109.8 21.6 134 179-368 86-231 (388)
217 2ghs_A AGR_C_1268P; regucalcin 99.2 3.9E-08 1.3E-12 98.5 30.7 190 270-473 50-260 (326)
218 3c75_H MADH, methylamine dehyd 99.1 3.9E-09 1.3E-13 108.4 22.4 257 173-475 111-404 (426)
219 2ece_A 462AA long hypothetical 99.1 4.6E-08 1.6E-12 99.2 24.9 190 271-461 140-399 (462)
220 3c75_H MADH, methylamine dehyd 99.0 1.3E-08 4.3E-13 104.6 21.0 216 273-496 122-382 (426)
221 3dr2_A Exported gluconolactona 99.0 4.7E-08 1.6E-12 96.8 23.8 200 258-473 34-267 (305)
222 3iuj_A Prolyl endopeptidase; h 99.0 1.2E-08 3.9E-13 113.5 21.3 196 266-474 126-360 (693)
223 1mda_H Methylamine dehydrogena 98.9 8.4E-09 2.9E-13 104.2 14.8 243 174-475 59-348 (368)
224 3q7m_A Lipoprotein YFGL, BAMB; 98.9 2.3E-07 7.7E-12 94.8 25.1 185 278-474 102-297 (376)
225 1fwx_A Nitrous oxide reductase 98.9 2.4E-07 8.4E-12 97.3 22.1 187 279-473 100-361 (595)
226 1mda_H Methylamine dehydrogena 98.8 1.6E-08 5.6E-13 102.0 11.0 256 281-570 34-347 (368)
227 2qe8_A Uncharacterized protein 98.8 1E-06 3.5E-11 88.7 23.8 202 269-474 17-279 (343)
228 1npe_A Nidogen, entactin; glyc 98.8 1.1E-05 3.9E-10 77.7 29.6 195 269-474 36-239 (267)
229 2fp8_A Strictosidine synthase; 98.8 2.6E-06 9E-11 84.8 25.4 257 183-474 20-314 (322)
230 1kb0_A Quinohemoprotein alcoho 98.7 1.3E-06 4.3E-11 96.4 24.2 218 279-500 174-536 (677)
231 2iwa_A Glutamine cyclotransfer 98.7 3.1E-06 1.1E-10 80.7 23.5 209 173-431 11-237 (266)
232 2hz6_A Endoplasmic reticulum t 98.7 6.7E-09 2.3E-13 106.0 5.4 219 192-474 8-237 (369)
233 1yiq_A Quinohemoprotein alcoho 98.7 1.3E-06 4.3E-11 96.6 23.8 223 279-504 167-538 (689)
234 2iwa_A Glutamine cyclotransfer 98.7 5.1E-06 1.7E-10 79.2 24.1 198 270-474 22-238 (266)
235 2ece_A 462AA long hypothetical 98.7 2.9E-06 9.8E-11 86.2 22.6 189 278-473 93-352 (462)
236 3q7m_A Lipoprotein YFGL, BAMB; 98.6 5.5E-06 1.9E-10 84.4 24.4 181 279-476 143-340 (376)
237 2p4o_A Hypothetical protein; p 98.6 3.9E-05 1.3E-09 75.7 29.4 225 182-463 32-278 (306)
238 1yiq_A Quinohemoprotein alcoho 98.6 8.9E-07 3E-11 97.8 19.0 193 279-476 70-341 (689)
239 1fwx_A Nitrous oxide reductase 98.6 8.2E-07 2.8E-11 93.4 17.6 198 270-474 135-432 (595)
240 3hxj_A Pyrrolo-quinoline quino 98.6 6.4E-07 2.2E-11 89.4 15.5 183 269-473 60-244 (330)
241 4a2l_A BT_4663, two-component 98.6 9.6E-05 3.3E-09 83.3 34.7 239 184-474 175-437 (795)
242 2hz6_A Endoplasmic reticulum t 98.6 6.6E-09 2.3E-13 106.0 -0.2 182 279-477 9-196 (369)
243 3nok_A Glutaminyl cyclase; bet 98.5 1.6E-05 5.5E-10 74.8 22.1 184 184-418 57-253 (268)
244 1kb0_A Quinohemoprotein alcoho 98.5 4E-06 1.4E-10 92.3 20.8 153 279-434 128-349 (677)
245 3hxj_A Pyrrolo-quinoline quino 98.5 6.7E-06 2.3E-10 81.8 20.7 185 270-473 138-324 (330)
246 3nol_A Glutamine cyclotransfer 98.5 2E-05 6.9E-10 74.2 21.9 186 269-462 43-244 (262)
247 4a2l_A BT_4663, two-component 98.5 0.00032 1.1E-08 79.0 35.5 244 181-474 262-527 (795)
248 3nok_A Glutaminyl cyclase; bet 98.5 4.3E-05 1.5E-09 71.9 23.2 187 269-462 55-254 (268)
249 3nol_A Glutamine cyclotransfer 98.5 2.4E-05 8.2E-10 73.6 21.4 195 173-420 33-244 (262)
250 1npe_A Nidogen, entactin; glyc 98.5 0.00024 8E-09 68.3 29.5 218 182-455 36-263 (267)
251 3mbr_X Glutamine cyclotransfer 98.4 0.0001 3.4E-09 68.8 24.6 191 266-462 16-223 (243)
252 1k3i_A Galactose oxidase precu 98.4 2.5E-05 8.6E-10 85.9 23.8 235 270-506 244-533 (656)
253 3qqz_A Putative uncharacterize 98.4 0.00022 7.7E-09 67.4 26.5 207 263-472 21-252 (255)
254 2p4o_A Hypothetical protein; p 98.4 0.00019 6.5E-09 70.6 26.2 198 269-473 32-242 (306)
255 3v9f_A Two-component system se 98.3 0.00074 2.5E-08 75.9 33.9 199 269-474 211-437 (781)
256 3mbr_X Glutamine cyclotransfer 98.3 0.00018 6.1E-09 67.1 23.6 190 179-418 16-222 (243)
257 2fp8_A Strictosidine synthase; 98.3 0.00023 7.9E-09 70.6 25.9 193 269-473 19-269 (322)
258 3v9f_A Two-component system se 98.3 0.004 1.4E-07 69.9 38.4 198 268-474 362-569 (781)
259 3v64_C Agrin; beta propeller, 98.3 0.00095 3.3E-08 66.9 29.6 197 269-474 73-276 (349)
260 3v65_B Low-density lipoprotein 98.3 0.00053 1.8E-08 69.8 27.6 198 268-474 115-319 (386)
261 3tc9_A Hypothetical hydrolase; 98.2 0.00037 1.3E-08 72.1 26.0 242 183-472 138-429 (430)
262 4hw6_A Hypothetical protein, I 98.2 0.0006 2.1E-08 70.5 27.4 243 183-472 140-432 (433)
263 1kv9_A Type II quinohemoprotei 98.2 5.5E-05 1.9E-09 83.2 19.5 192 279-476 66-336 (668)
264 2ad6_A Methanol dehydrogenase 98.2 0.00021 7E-09 76.9 23.5 196 279-478 160-499 (571)
265 1kv9_A Type II quinohemoprotei 98.2 0.0002 7E-09 78.6 23.0 195 279-477 162-492 (668)
266 1ijq_A LDL receptor, low-densi 98.1 0.0054 1.8E-07 60.4 30.8 199 268-474 29-239 (316)
267 2xe4_A Oligopeptidase B; hydro 98.1 0.0002 6.9E-09 79.9 22.4 239 179-474 170-459 (751)
268 3v64_C Agrin; beta propeller, 98.0 0.0041 1.4E-07 62.2 28.5 197 270-474 35-235 (349)
269 3p5b_L Low density lipoprotein 98.0 0.0079 2.7E-07 61.4 31.0 200 267-474 110-321 (400)
270 3v65_B Low-density lipoprotein 98.0 0.0023 7.8E-08 65.1 26.2 195 272-474 80-278 (386)
271 1w6s_A Methanol dehydrogenase 97.9 0.0011 3.9E-08 71.2 23.3 197 279-478 166-508 (599)
272 1ijq_A LDL receptor, low-densi 97.9 0.0034 1.2E-07 61.8 25.2 179 289-474 10-196 (316)
273 2xe4_A Oligopeptidase B; hydro 97.9 0.00071 2.4E-08 75.5 22.4 193 270-471 175-398 (751)
274 3kya_A Putative phosphatase; s 97.9 0.0043 1.5E-07 64.5 26.2 205 269-474 186-476 (496)
275 3sov_A LRP-6, low-density lipo 97.9 0.0099 3.4E-07 58.5 27.7 197 269-474 35-239 (318)
276 2ad6_A Methanol dehydrogenase 97.9 0.002 6.7E-08 69.3 24.2 150 279-433 115-337 (571)
277 2xbg_A YCF48-like protein; pho 97.9 0.026 9E-07 55.7 32.0 190 268-474 79-279 (327)
278 3qqz_A Putative uncharacterize 97.9 0.0092 3.1E-07 56.3 25.3 203 175-428 20-250 (255)
279 2p9w_A MAL S 1 allergenic prot 97.8 0.0063 2.1E-07 59.2 23.3 204 266-473 10-265 (334)
280 1flg_A Protein (quinoprotein e 97.8 0.0086 2.9E-07 64.3 26.9 58 421-479 465-522 (582)
281 3tc9_A Hypothetical hydrolase; 97.7 0.0014 4.9E-08 67.6 19.3 157 310-473 138-301 (430)
282 3p5b_L Low density lipoprotein 97.7 0.0097 3.3E-07 60.7 25.2 187 280-474 84-278 (400)
283 4hw6_A Hypothetical protein, I 97.7 0.0025 8.5E-08 65.9 20.7 156 269-430 139-303 (433)
284 1w6s_A Methanol dehydrogenase 97.7 0.0089 3E-07 64.3 24.6 148 282-434 124-345 (599)
285 3m0c_C LDL receptor, low-densi 97.6 0.055 1.9E-06 60.0 30.8 200 266-474 421-633 (791)
286 2p9w_A MAL S 1 allergenic prot 97.6 0.016 5.5E-07 56.3 23.1 111 270-381 64-215 (334)
287 3amr_A 3-phytase; beta-propell 97.6 0.033 1.1E-06 54.7 25.0 184 281-472 42-262 (355)
288 2xbg_A YCF48-like protein; pho 97.6 0.056 1.9E-06 53.3 27.3 192 269-471 122-320 (327)
289 1k3i_A Galactose oxidase precu 97.5 0.00082 2.8E-08 73.8 14.5 230 182-462 243-530 (656)
290 3s94_A LRP-6, low-density lipo 97.5 0.064 2.2E-06 58.0 28.2 199 268-474 39-244 (619)
291 3sov_A LRP-6, low-density lipo 97.4 0.032 1.1E-06 54.8 22.9 184 281-474 6-198 (318)
292 2ism_A Putative oxidoreductase 97.4 0.062 2.1E-06 53.6 25.2 226 182-461 31-333 (352)
293 3amr_A 3-phytase; beta-propell 97.4 0.039 1.3E-06 54.2 22.5 141 288-430 98-262 (355)
294 3m0c_C LDL receptor, low-densi 97.4 0.038 1.3E-06 61.3 25.0 187 280-474 396-590 (791)
295 1n7d_A LDL receptor, low-densi 97.3 0.0012 4.1E-08 72.8 12.8 198 269-474 406-615 (699)
296 2xzh_A Clathrin heavy chain 1; 97.3 0.14 4.7E-06 49.4 29.2 238 187-474 72-333 (365)
297 4a0p_A LRP6, LRP-6, low-densit 97.3 0.29 9.9E-06 52.9 37.7 191 182-380 37-236 (628)
298 1flg_A Protein (quinoprotein e 97.3 0.012 4.3E-07 63.1 19.6 85 330-420 465-549 (582)
299 2ism_A Putative oxidoreductase 97.3 0.061 2.1E-06 53.6 23.3 227 267-508 29-328 (352)
300 3s94_A LRP-6, low-density lipo 97.2 0.36 1.2E-05 52.1 31.4 198 269-474 171-424 (619)
301 4a0p_A LRP6, LRP-6, low-densit 97.2 0.32 1.1E-05 52.6 29.4 195 269-474 37-238 (628)
302 3kya_A Putative phosphatase; s 97.1 0.014 4.9E-07 60.5 17.6 157 310-473 140-341 (496)
303 3a9g_A Putative uncharacterize 97.1 0.3 1E-05 48.6 27.3 228 182-461 29-330 (354)
304 3a9g_A Putative uncharacterize 97.0 0.33 1.1E-05 48.3 25.8 198 268-473 28-296 (354)
305 1bpo_A Protein (clathrin); cla 97.0 0.38 1.3E-05 48.3 30.1 204 268-474 105-332 (494)
306 2g8s_A Glucose/sorbosone dehyd 96.9 0.41 1.4E-05 47.5 25.9 67 400-467 271-348 (353)
307 3pbp_A Nucleoporin NUP82; beta 96.9 0.087 3E-06 52.8 19.6 148 320-469 31-208 (452)
308 1n7d_A LDL receptor, low-densi 96.8 0.0055 1.9E-07 67.5 11.5 179 288-474 385-572 (699)
309 3sre_A PON1, serum paraoxonase 96.8 0.5 1.7E-05 46.8 25.9 187 270-470 51-295 (355)
310 3das_A Putative oxidoreductase 96.6 0.46 1.6E-05 46.8 22.6 150 307-460 30-219 (347)
311 3sre_A PON1, serum paraoxonase 96.6 0.53 1.8E-05 46.6 22.9 150 270-428 113-295 (355)
312 1tl2_A L10, protein (tachylect 96.5 0.041 1.4E-06 49.9 12.8 173 281-467 6-204 (236)
313 2vpj_A Kelch-like protein 12; 96.4 0.2 6.7E-06 48.4 18.6 182 280-474 64-279 (301)
314 2xn4_A Kelch-like protein 2; s 96.4 0.3 1E-05 47.1 19.9 182 281-474 64-277 (302)
315 2xzh_A Clathrin heavy chain 1; 96.4 0.8 2.7E-05 44.2 26.0 186 277-475 75-292 (365)
316 3ei3_A DNA damage-binding prot 96.2 0.83 2.8E-05 53.0 25.2 140 280-429 845-997 (1158)
317 3pbp_A Nucleoporin NUP82; beta 96.2 0.14 4.7E-06 51.4 16.0 143 281-427 34-208 (452)
318 3ii7_A Kelch-like protein 7; p 96.1 0.76 2.6E-05 44.3 21.4 180 281-474 58-273 (306)
319 3ei3_A DNA damage-binding prot 96.0 3.3 0.00011 48.0 32.2 224 269-502 514-755 (1158)
320 1zgk_A Kelch-like ECH-associat 96.0 0.52 1.8E-05 45.6 19.3 173 289-474 90-288 (308)
321 3ott_A Two-component system se 95.9 2.7 9.2E-05 46.5 30.4 193 268-474 62-261 (758)
322 1bpo_A Protein (clathrin); cla 95.9 1.7 5.7E-05 43.8 24.8 190 276-476 73-292 (494)
323 3das_A Putative oxidoreductase 95.8 1.6 5.5E-05 42.9 26.9 243 176-461 26-326 (347)
324 4asc_A Kelch repeat and BTB do 95.7 1.7 5.7E-05 42.1 21.9 172 291-474 69-278 (315)
325 1cru_A Protein (soluble quinop 95.5 0.61 2.1E-05 48.1 18.4 109 308-418 26-161 (454)
326 1tl2_A L10, protein (tachylect 95.5 0.043 1.5E-06 49.7 8.2 101 269-375 41-157 (236)
327 2be1_A Serine/threonine-protei 95.2 1.1 3.7E-05 43.9 18.0 92 286-378 64-181 (339)
328 1xi4_A Clathrin heavy chain; a 95.1 1.1 3.7E-05 52.0 19.8 204 268-474 105-332 (1630)
329 1uuj_A Platelet-activating fac 94.8 0.00026 8.8E-09 53.1 -7.0 56 79-134 4-66 (88)
330 3ott_A Two-component system se 94.7 6.4 0.00022 43.4 31.9 182 270-469 104-303 (758)
331 3s25_A Hypothetical 7-bladed b 94.1 4.4 0.00015 39.0 19.4 159 289-474 88-256 (302)
332 2g8s_A Glucose/sorbosone dehyd 94.1 1.4 4.8E-05 43.6 16.2 146 309-459 18-214 (353)
333 3ii7_A Kelch-like protein 7; p 94.0 4.1 0.00014 39.0 19.2 181 281-474 14-226 (306)
334 3s25_A Hypothetical 7-bladed b 94.0 4.7 0.00016 38.8 19.6 162 288-474 36-217 (302)
335 1cru_A Protein (soluble quinop 93.9 6.6 0.00023 40.3 29.6 32 181-212 26-57 (454)
336 1xi4_A Clathrin heavy chain; a 93.8 2.8 9.6E-05 48.7 19.3 190 277-477 74-293 (1630)
337 2vpj_A Kelch-like protein 12; 93.7 3.1 0.00011 39.7 17.7 173 289-474 31-232 (301)
338 2woz_A Kelch repeat and BTB do 93.5 3.3 0.00011 40.0 17.5 130 291-431 80-231 (318)
339 2xn4_A Kelch-like protein 2; s 93.4 3.2 0.00011 39.7 17.1 173 289-474 30-230 (302)
340 2uvk_A YJHT; unknown function, 93.0 2.6 9E-05 41.4 16.3 88 289-379 86-224 (357)
341 3qhy_B Beta-lactamase inhibito 92.7 7 0.00024 37.1 19.4 182 270-474 64-247 (282)
342 3b7f_A Glycosyl hydrolase, BNR 92.1 10 0.00035 37.8 24.2 146 269-419 115-297 (394)
343 2zwa_A Leucine carboxyl methyl 91.6 8.8 0.0003 41.8 19.4 104 279-383 451-579 (695)
344 4asc_A Kelch repeat and BTB do 90.3 13 0.00044 35.6 19.7 180 281-474 7-222 (315)
345 1zgk_A Kelch-like ECH-associat 89.9 7.9 0.00027 37.0 15.5 172 289-474 39-241 (308)
346 2rr3_B OSBP, oxysterol-binding 89.3 0.17 5.7E-06 31.4 1.6 18 3-20 12-29 (47)
347 2zwa_A Leucine carboxyl methyl 89.2 9.5 0.00033 41.5 17.0 152 278-432 397-578 (695)
348 3sbq_A Nitrous-oxide reductase 88.0 1.8 6.1E-05 45.0 9.2 97 332-432 299-409 (638)
349 3b7f_A Glycosyl hydrolase, BNR 87.8 23 0.00079 35.1 25.2 155 269-427 55-258 (394)
350 2woz_A Kelch repeat and BTB do 87.6 20 0.00069 34.2 17.8 173 290-474 25-232 (318)
351 2wg3_C Hedgehog-interacting pr 85.7 12 0.00043 38.2 14.4 113 351-463 14-159 (463)
352 3q6k_A 43.2 kDa salivary prote 84.2 34 0.0012 33.8 22.9 167 290-460 124-341 (381)
353 2be1_A Serine/threonine-protei 83.5 1.1 3.9E-05 43.8 5.1 109 279-387 10-136 (339)
354 3uc1_A DNA gyrase subunit A; D 83.1 35 0.0012 33.0 25.1 148 279-430 109-278 (327)
355 3sbq_A Nitrous-oxide reductase 82.5 50 0.0017 34.4 18.5 193 281-474 144-409 (638)
356 1wp5_A Topoisomerase IV; broke 80.6 42 0.0014 32.3 28.9 198 277-474 48-278 (323)
357 2uvk_A YJHT; unknown function, 79.5 47 0.0016 32.1 16.4 88 281-371 22-128 (357)
358 2wg3_C Hedgehog-interacting pr 79.1 59 0.002 33.1 26.0 30 182-211 14-44 (463)
359 4gq2_M Nucleoporin NUP120; bet 77.1 41 0.0014 38.0 15.8 38 269-306 236-274 (950)
360 3l6v_A GYRA, DNA gyrase subuni 74.8 67 0.0023 31.6 29.4 204 270-473 47-316 (370)
361 3qhy_B Beta-lactamase inhibito 73.2 62 0.0021 30.3 15.3 182 270-474 25-208 (282)
362 1sqj_A OXG-RCBH, oligoxylogluc 71.8 1.2E+02 0.004 33.4 17.6 160 308-467 14-195 (789)
363 4gq2_M Nucleoporin NUP120; bet 71.6 49 0.0017 37.4 14.6 37 310-347 237-273 (950)
364 3no0_A DNA gyrase subunit A; D 71.3 67 0.0023 30.0 19.4 161 308-474 23-197 (276)
365 4hvt_A Ritya.17583.B, post-pro 68.4 1.4E+02 0.0047 32.4 25.7 174 289-472 216-429 (711)
366 1zi0_A DNA gyrase subunit A; b 64.1 1E+02 0.0034 29.3 30.5 196 277-474 51-278 (307)
367 3l6v_A GYRA, DNA gyrase subuni 63.0 1.2E+02 0.0041 29.8 24.4 190 280-474 8-266 (370)
368 1suu_A DNA gyrase subunit A; t 61.7 1.1E+02 0.0038 29.1 26.2 188 281-474 10-232 (312)
369 3uc1_A DNA gyrase subunit A; D 56.8 1.4E+02 0.0048 28.6 26.5 195 279-474 53-280 (327)
370 1l6x_B Minimized B-domain of p 50.5 3.2 0.00011 24.3 -0.0 21 37-58 9-29 (34)
371 1zda_A Mini protein A domain, 48.4 3.3 0.00011 25.0 -0.2 23 35-58 12-34 (38)
372 1zi0_A DNA gyrase subunit A; b 47.9 1.9E+02 0.0064 27.4 26.2 188 281-473 5-226 (307)
373 1suu_A DNA gyrase subunit A; t 45.0 2.1E+02 0.0071 27.1 31.2 196 277-473 56-283 (312)
374 2cn3_A Xyloglucanase, beta-1,4 44.3 3.4E+02 0.012 29.4 20.2 103 269-371 23-153 (737)
375 4fhn_B Nucleoporin NUP120; pro 41.9 59 0.002 37.6 8.7 36 311-347 240-275 (1139)
376 4fhn_B Nucleoporin NUP120; pro 40.9 60 0.002 37.6 8.6 37 270-306 239-276 (1139)
377 4hvt_A Ritya.17583.B, post-pro 38.8 4E+02 0.014 28.7 19.9 193 271-474 131-382 (711)
378 1sqj_A OXG-RCBH, oligoxylogluc 38.2 4.3E+02 0.015 28.8 22.4 151 268-421 14-190 (789)
379 3no0_A DNA gyrase subunit A; D 33.7 2.9E+02 0.01 25.5 26.7 202 270-474 25-247 (276)
380 3f7f_A Nucleoporin NUP120; nuc 33.1 56 0.0019 35.2 6.0 38 269-307 222-259 (729)
381 3a0f_A Xyloglucanase; beta-pro 31.3 5.4E+02 0.018 27.9 21.9 152 267-422 19-203 (763)
382 3q6k_A 43.2 kDa salivary prote 30.2 4E+02 0.014 26.1 19.3 141 332-473 124-306 (381)
383 3f7f_A Nucleoporin NUP120; nuc 28.4 76 0.0026 34.2 6.1 36 311-349 224-259 (729)
384 3qwo_C Motavizumab epitope sca 28.1 12 0.00041 24.8 -0.0 22 36-58 9-30 (57)
385 2cn3_A Xyloglucanase, beta-1,4 27.7 6E+02 0.02 27.3 18.8 113 309-421 23-153 (737)
386 4a9v_A PHOX; hydrolase, beta-p 26.5 2E+02 0.0069 30.1 8.6 60 310-370 477-550 (592)
387 3a0f_A Xyloglucanase; beta-pro 26.4 6.4E+02 0.022 27.2 17.8 157 307-464 19-203 (763)
388 3zwu_A Alkaline phosphatase PH 24.6 2.8E+02 0.0095 29.1 9.5 60 400-460 476-548 (592)
389 4a9v_A PHOX; hydrolase, beta-p 24.2 2.5E+02 0.0087 29.3 8.9 59 269-328 476-549 (592)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.3e-46 Score=412.88 Aligned_cols=409 Identities=17% Similarity=0.192 Sum_probs=296.2
Q ss_pred ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcc-------------eeeeecCCCCCccCCCCCeeeec
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA-------------SCKSFTDDGGFGSNAKEGKIKFG 238 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 238 (626)
...++|.+|.+.|++++|+|+|++||+|+.||+|+|||+.++.. ....|++++..+.....+.
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~---- 125 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR---- 125 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS----
T ss_pred ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCC----
Confidence 45567889999999999999999999999999999999865332 2334444444332221110
Q ss_pred CCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEE
Q 006909 239 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ 315 (626)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~ 315 (626)
.....+. +|+ .......+.+|...|++++|+|++ .|++|+.|++|++||..++++...+. |...|.+++
T Consensus 126 ---~~~~~v~----~wd-~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~ 197 (611)
T 1nr0_A 126 ---ERFGHVF----LFD-TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR 197 (611)
T ss_dssp ---SCSEEEE----ETT-TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEE
T ss_pred ---CceeEEE----Eee-CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEE
Confidence 0001111 122 134566788999999999999986 59999999999999999998888875 999999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCCCCeEEEec--------cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909 316 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA--------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 387 (626)
Q Consensus 316 ~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~--------~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~ 387 (626)
|+| ++++|++|+.|++|++||+.+++..... .|...|.+++|+|+|++|++++.|++|++||+.+.+....
T Consensus 198 fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~ 276 (611)
T 1nr0_A 198 YNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 276 (611)
T ss_dssp ECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeee
Confidence 999 9999999999999999999888766543 6899999999999999999999999999999987654322
Q ss_pred EEe------------------------------------eccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909 388 KVD------------------------------------FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 431 (626)
Q Consensus 388 ~~~------------------------------------~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~ 431 (626)
... .......|...|++++|+|+| .+|++++.|++|++||+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDIST 355 (611)
T ss_dssp EECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT
T ss_pred ecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCC
Confidence 100 001123567899999999998 7999999999999999753
Q ss_pred ceeeeee-------------------------------------------------------------------------
Q 006909 432 VIHKFKG------------------------------------------------------------------------- 438 (626)
Q Consensus 432 ~~~~~~~------------------------------------------------------------------------- 438 (626)
.......
T Consensus 356 ~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~ 435 (611)
T 1nr0_A 356 GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 435 (611)
T ss_dssp CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEE
T ss_pred CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEE
Confidence 2110000
Q ss_pred ---------cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCccc
Q 006909 439 ---------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQ 509 (626)
Q Consensus 439 ---------~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l 509 (626)
..+...+.+++|+|+|++|++|+.|++|++||+.+...... ....+.+.+.+++|+|+|..|
T Consensus 436 ~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~---------~~~~h~~~v~~v~fspdg~~l 506 (611)
T 1nr0_A 436 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV---------KTIVHPAEITSVAFSNNGAFL 506 (611)
T ss_dssp EEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE---------EEEECSSCEEEEEECTTSSEE
T ss_pred EEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee---------eccCCCCceEEEEECCCCCEE
Confidence 00224567899999999999999999999999976421000 001223445566666666665
Q ss_pred ccccCCCccccCccccccCCCC-----cccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHH
Q 006909 510 KSLCSSSLRDCSQKWDNLETAP-----WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQ 584 (626)
Q Consensus 510 ~~~~~~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 584 (626)
+..+.+ +.+.+|+...... ....|...|.+++|+|||++|++++. |+.|++|++.++. ...
T Consensus 507 as~s~d---~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~-D~~v~lW~~~~~~----------~~~ 572 (611)
T 1nr0_A 507 VATDQS---RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL-DNSVIVWNMNKPS----------DHP 572 (611)
T ss_dssp EEEETT---SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTCTT----------SCC
T ss_pred EEEcCC---CCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEEC-CCcEEEEECCCcc----------ccc
Confidence 554433 3345555533111 12337778999999999999999998 8999999998762 001
Q ss_pred -hhhccC-Cccc--cccccccceEEEEecCCceEeeeee
Q 006909 585 -QQCLNN-VDDV--RAISATWGLVIVTAGCDGMIKTFHN 619 (626)
Q Consensus 585 -~~~~~~-~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~ 619 (626)
.....| ...+ .++++ +|+ |||||.||+||+|++
T Consensus 573 ~~~~~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 573 IIIKGAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEETTSSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEEC
T ss_pred chhhccCcccCeeEEEEcC-CCE-EEEecCCCCEEEEec
Confidence 112223 2223 34555 788 999999999999986
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.2e-45 Score=380.95 Aligned_cols=379 Identities=19% Similarity=0.330 Sum_probs=248.7
Q ss_pred hhccccccceeeeeecc--ccccccccccccCCC----Cc-ccccChhhHHHHHHHHHHhhccccchhccccCCCCCCCC
Q 006909 79 ELEQDQMNECVVTLEGE--SNGFSQSVDKFENPF----PE-CKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKP 151 (626)
Q Consensus 79 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (626)
.|.++|++++++.+.+| +.+..+..+.|+.+. ++ ......+.+++.|..+++++++..+... ..........
T Consensus 2 ~~~~~q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~-~~~~~~~~~~ 80 (410)
T 1vyh_C 2 VLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELES-KLNEAKEEFT 80 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcchhhhhhchhhhhhhheeeHHHHHHHHHH-HHHHHHHHHh
Confidence 37889999999999777 555666666666654 11 1122346788899999988776422111 0000000000
Q ss_pred ccchhHhhhcccccccccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCC
Q 006909 152 KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAK 231 (626)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 231 (626)
........ .....+.+.......+.+|.++|++++|+|++++||+|+.||+|+|||+.+
T Consensus 81 ~~~~~~~~--~~~~~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~------------------- 139 (410)
T 1vyh_C 81 SGGPLGQK--RDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET------------------- 139 (410)
T ss_dssp -------------CCCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT-------------------
T ss_pred ccCCcccc--CCccccccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------------------
Confidence 01111111 111122333445667889999999999999999999999999999999987
Q ss_pred CCeeeecCCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCC
Q 006909 232 EGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHN 309 (626)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~ 309 (626)
......+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. |..
T Consensus 140 --------------------------~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 193 (410)
T 1vyh_C 140 --------------------------GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH 193 (410)
T ss_dssp --------------------------CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSS
T ss_pred --------------------------CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCC
Confidence 34567888999999999999987 89999999999999999999988874 889
Q ss_pred CeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeE
Q 006909 310 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK 388 (626)
Q Consensus 310 ~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~ 388 (626)
.|.+++|+| ++++|++|+.|++|++||++++..+ .+.+|...|.++.++|+++++++|+.||+|++||+.+......
T Consensus 194 ~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~- 271 (410)
T 1vyh_C 194 NVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE- 271 (410)
T ss_dssp CEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-
T ss_pred CEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE-
Confidence 999999999 9999999999999999999988765 4678899999999999999999999999999999988765332
Q ss_pred EeeccccccCCCCeEEEEEcCCC-------------------CcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEE
Q 006909 389 VDFHDRKKTSGNKITGIQFSRDE-------------------SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSAS 449 (626)
Q Consensus 389 ~~~~~~~~~~~~~i~~l~~s~~~-------------------~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 449 (626)
...|...|.+++|+|++ +.+|++++.|++|++||+.+.........|...|.+++
T Consensus 272 ------~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~ 345 (410)
T 1vyh_C 272 ------LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL 345 (410)
T ss_dssp ------ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred ------ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEE
Confidence 22345789999999962 25899999999999999887665555556889999999
Q ss_pred EcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCC
Q 006909 450 FTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET 529 (626)
Q Consensus 450 ~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~ 529 (626)
|+|+|++|++|+.|++|++||+.++... . .
T Consensus 346 ~~~~g~~l~s~s~D~~i~vwd~~~~~~~---------~---------~-------------------------------- 375 (410)
T 1vyh_C 346 FHSGGKFILSCADDKTLRVWDYKNKRCM---------K---------T-------------------------------- 375 (410)
T ss_dssp ECSSSSCEEEEETTTEEEEECCTTSCCC---------E---------E--------------------------------
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceE---------E---------E--------------------------------
Confidence 9999999999999999999998753100 0 0
Q ss_pred CCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCc
Q 006909 530 APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV 567 (626)
Q Consensus 530 ~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~ 567 (626)
+..|...|++++|+|++.++++++. |+.|++|+.
T Consensus 376 ---~~~h~~~v~~l~~~~~~~~l~sgs~-D~~i~vW~~ 409 (410)
T 1vyh_C 376 ---LNAHEHFVTSLDFHKTAPYVVTGSV-DQTVKVWEC 409 (410)
T ss_dssp ---EECCSSCEEEEEECSSSSCEEEEET-TSEEEEEC-
T ss_pred ---EcCCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEeC
Confidence 1123345677788888888888888 789999975
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.3e-43 Score=386.03 Aligned_cols=379 Identities=16% Similarity=0.134 Sum_probs=283.7
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
.+.+.+.+++|+|||++||+++ ++.|+||++.+ .
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~---------------------------------------------~ 49 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS---------------------------------------------L 49 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC---------------------------------------------S
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCC---------------------------------------------c
Confidence 5678899999999999999998 56999999976 3
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCee--eEee------------------------------
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC--LNVF------------------------------ 305 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~--~~~~------------------------------ 305 (626)
.....+.+|...|++++|+|+| +|++|+.|++|+|||+.+++. ...+
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence 4567888999999999999998 899999999999999864321 1111
Q ss_pred ---------------cCCCCeEEEEEeeCCCC-EEEEEeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEE
Q 006909 306 ---------------DHHNYVTCVQFNPIDDN-YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVG 368 (626)
Q Consensus 306 ---------------~~~~~v~~~~~~p~~~~-~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g 368 (626)
.|...|++++|+| ++. .|++|+.|++|++||...++.. .+.+|...|.+++|+|+|++|++|
T Consensus 130 ~v~~wd~~~~~~~l~gh~~~v~~v~f~p-~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 130 HVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp EEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEeeCCCCcceecCCCCCceEEEECC-CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 2556677888888 554 6999999999999999887654 467899999999999999999999
Q ss_pred ecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee--ee----------
Q 006909 369 SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--KF---------- 436 (626)
Q Consensus 369 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~--~~---------- 436 (626)
+.|++|++||+.++...............|...|.+++|+|++ .+|++++.|++|++||+.+... .+
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~ 287 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ 287 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCE
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCcccee
Confidence 9999999999987765322101001112567899999999998 7999999999999999764221 11
Q ss_pred -------------------------------eecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCC---Ccc
Q 006909 437 -------------------------------KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS---KQK 482 (626)
Q Consensus 437 -------------------------------~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~---~~~ 482 (626)
....|...|.+++|+|+|++|++++.|++|++||+.++..... .+.
T Consensus 288 ~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~ 367 (611)
T 1nr0_A 288 LGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA 367 (611)
T ss_dssp EEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS
T ss_pred EEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCc
Confidence 1235788999999999999999999999999999987632111 011
Q ss_pred CC-------------------------------------------ccceeeeccCC------------------------
Q 006909 483 NS-------------------------------------------VRSCEHFFSEG------------------------ 495 (626)
Q Consensus 483 ~~-------------------------------------------~~~~~~~~~~g------------------------ 495 (626)
.. ....+.|+|+|
T Consensus 368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~ 447 (611)
T 1nr0_A 368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 447 (611)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred ceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec
Confidence 00 11223344444
Q ss_pred --cEEEEecCCCCcccccccCCCccccCccccccCCCC---cccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909 496 --VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP---WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 496 --~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~ 570 (626)
...+++|+|+|..++..+.+ +.+++|+...... ....+...+.+++|||||+++++++. |++|++|++.++
T Consensus 448 ~~~v~~va~spdg~~lasgs~D---~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~-d~~v~~w~~~~~ 523 (611)
T 1nr0_A 448 SYNSSCVALSNDKQFVAVGGQD---SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-SRKVIPYSVANN 523 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEETT---SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEEGGGT
T ss_pred CCCceEEEEeCCCCEEEEeCCC---CeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcC-CCCEEEEEcCCC
Confidence 23467788888887766554 4577787643211 12456777999999999999999998 799999999873
Q ss_pred CCCCCCChhhHHHHh--hhccCCccc--cccccccceEEEEecCCceEeeeeec
Q 006909 571 SDGYCQDPQQQRLQQ--QCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNY 620 (626)
Q Consensus 571 ~~~~~~~~~~~~~~~--~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~ 620 (626)
. .... ....|...+ .++++ ||++|||||.||+|++|++.
T Consensus 524 ~----------~~~~~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 524 F----------ELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp T----------EESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred C----------ceeeeeeeeecccceeEEEECC-CCCEEEEEECCCcEEEEECC
Confidence 1 1111 111133333 35666 89999999999999999975
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.5e-42 Score=377.23 Aligned_cols=411 Identities=23% Similarity=0.381 Sum_probs=299.3
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----------cceeeeecCCCCCccCCC-CCeeeecCC-
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV----------AASCKSFTDDGGFGSNAK-EGKIKFGKK- 240 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 240 (626)
+.++|.+|++.|++++|+|||++||+|+.|++|+|||+... ...+..|++++..+.... ++.+.++..
T Consensus 49 ~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~ 128 (577)
T 2ymu_A 49 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 128 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccc
Confidence 45678899999999999999999999999999999997532 123445555554332211 111111100
Q ss_pred ----------------------------------------C----------------------CCCceeecCC---cccc
Q 006909 241 ----------------------------------------K----------------------SSHVPVVIPD---EVFQ 255 (626)
Q Consensus 241 ----------------------------------------~----------------------~~~~~~~~~~---~~~~ 255 (626)
. .........+ .+|+
T Consensus 129 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~ 208 (577)
T 2ymu_A 129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208 (577)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEe
Confidence 0 0000000001 2455
Q ss_pred ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV 333 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v 333 (626)
.....+..+.+|...|.+++|+|++ +|++++.|+.|++||.. ++.+..+ .|...|.+++|+| ++..+++++.|+.|
T Consensus 209 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i 286 (577)
T 2ymu_A 209 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTV 286 (577)
T ss_dssp TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred CCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEE
Confidence 5566677888999999999999998 89999999999999975 4555555 5889999999999 99999999999999
Q ss_pred EEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909 334 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 413 (626)
Q Consensus 334 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (626)
++||........+.+|...|.+++|+|+++.+++++.||.|++||..+.... .+ ..+...+.+++|+|++ .
T Consensus 287 ~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~--~~------~~~~~~v~~~~~s~~g-~ 357 (577)
T 2ymu_A 287 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ--TL------TGHSSSVWGVAFSPDG-Q 357 (577)
T ss_dssp EEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE--EE------CCCSSCEEEEEECTTS-S
T ss_pred EEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE--EE------eCCCCCEEEEEECCCC-C
Confidence 9999887777778889999999999999999999999999999998765432 11 2345789999999998 7
Q ss_pred EEEEEeCCCcEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeec
Q 006909 414 RIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 492 (626)
Q Consensus 414 ~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 492 (626)
++++++.|+.|++||... ....+ ..|...|.+++|+|++++|++++.|+.|++||.......... .
T Consensus 358 ~l~~~~~dg~v~~~~~~~~~~~~~--~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~-----------~ 424 (577)
T 2ymu_A 358 TIASASDDKTVKLWNRNGQLLQTL--TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT-----------G 424 (577)
T ss_dssp EEEEEETTSEEEEEETTCCEEEEE--ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEE-----------C
T ss_pred EEEEEeCCCEEEEEcCCCCEEEEe--cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEec-----------C
Confidence 999999999999999642 33333 347889999999999999999999999999997543211111 1
Q ss_pred cCCcEEEEecCCCCcccccccCCCccccCccccccCC-CCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCC
Q 006909 493 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET-APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDS 571 (626)
Q Consensus 493 ~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~ 571 (626)
+.+.+.+++|+|++..++....+ +.+.+|+.... ...+..+...+.+++|+|||+++++++. |+.|++||.. +
T Consensus 425 ~~~~v~~~~~s~d~~~l~~~~~d---~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~-d~~i~iw~~~-~- 498 (577)
T 2ymu_A 425 HSSSVWGVAFSPDDQTIASASDD---KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLWNRN-G- 498 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETT---SEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEET-TSEEEEEETT-S-
T ss_pred CCCCeEEEEECCCCCEEEEEcCC---CEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-CCEEEEEcCC-C-
Confidence 22344455556665555544333 23445553111 1234567778999999999999999988 7999999953 3
Q ss_pred CCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeeecCccc
Q 006909 572 DGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNYGLPI 624 (626)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~g~p~ 624 (626)
+.......|...+ .++++ ||++||||+.||+|++|+.-|.++
T Consensus 499 ----------~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~~~~~~ 542 (577)
T 2ymu_A 499 ----------QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLL 542 (577)
T ss_dssp ----------CEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTTSCEE
T ss_pred ----------CEEEEEeCCCCCEEEEEEcC-CCCEEEEEECcCEEEEEeCCCCEE
Confidence 1122233344333 35566 899999999999999999766543
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-42 Score=378.63 Aligned_cols=360 Identities=24% Similarity=0.385 Sum_probs=284.1
Q ss_pred ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
...+.+.+|.+.|.+++|+|+|++|++++.|+.|++|+...
T Consensus 212 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~--------------------------------------- 252 (577)
T 2ymu_A 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------------------------------------- 252 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS---------------------------------------
T ss_pred cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC---------------------------------------
Confidence 34567889999999999999999999999999999998643
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeC
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~ 329 (626)
+.+..+.+|...|.+++|+|++ .|++++.|++|++||.. ++.+..+ .|...|.+++|+| ++.+|++++.
T Consensus 253 -------~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~ 323 (577)
T 2ymu_A 253 -------QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP-DGQTIASASD 323 (577)
T ss_dssp -------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEET
T ss_pred -------CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECC-CCCEEEEEeC
Confidence 3466778999999999999998 89999999999999976 4555555 5899999999999 9999999999
Q ss_pred CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 330 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 330 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
|++|++||+....+.....|...+.+++|+|+|+++++++.||.+++|+..... ...+ ..|...|++++|+|
T Consensus 324 d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~--~~~~------~~~~~~v~~~~~s~ 395 (577)
T 2ymu_A 324 DKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTL------TGHSSSVRGVAFSP 395 (577)
T ss_dssp TSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCE--EEEE------ECCSSCEEEEEECT
T ss_pred CCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCE--EEEe------cCCCCCeEEEEECC
Confidence 999999999988888888999999999999999999999999999999965432 2222 22457899999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccce
Q 006909 410 DESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC 488 (626)
Q Consensus 410 ~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 488 (626)
++ ++|++++.|+.|++||... ....+. .|...|.+++|+|++++|++++.|+.|++||..........
T Consensus 396 dg-~~l~~~~~d~~v~~~~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~-------- 464 (577)
T 2ymu_A 396 DG-QTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLT-------- 464 (577)
T ss_dssp TS-SCEEEEETTSEEEEECTTCCEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEE--------
T ss_pred CC-CEEEEEeCCCEEEEEeCCCCEEEEec--CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEc--------
Confidence 98 7999999999999999642 333333 48889999999999999999999999999997653211111
Q ss_pred eeeccCCcEEEEecCCCCcccccccCCCccccCccccccCC-CCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCc
Q 006909 489 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET-APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV 567 (626)
Q Consensus 489 ~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~ 567 (626)
.+.+.+.+++|+|++..++..+.+ +.+.+|+.... ...+..|...+++++|+|||++|++++. |+.|++||.
T Consensus 465 ---~~~~~v~~~~~spd~~~las~~~d---~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-dg~v~lwd~ 537 (577)
T 2ymu_A 465 ---GHSSSVRGVAFSPDGQTIASASDD---KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLWNR 537 (577)
T ss_dssp ---CCSSCEEEEEECTTSCEEEEEETT---SEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEET-TSEEEEECT
T ss_pred ---CCCCCEEEEEEcCCCCEEEEEeCC---CEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC-cCEEEEEeC
Confidence 122334455555555555543332 23445553111 1234567778999999999999999988 799999996
Q ss_pred ccCCCCCCCChhhHHHHhhhccCCcccc--ccccccceEEEEecCCceEeeee
Q 006909 568 TIDSDGYCQDPQQQRLQQQCLNNVDDVR--AISATWGLVIVTAGCDGMIKTFH 618 (626)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~dg~~ivt~g~Dg~Irvw~ 618 (626)
. + +.......|.+.+. ++++ ||++|+|+|.||+|++|+
T Consensus 538 ~-~-----------~~~~~~~~h~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 538 N-G-----------QLLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp T-S-----------CEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred C-C-----------CEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 3 3 12223344555543 4556 899999999999999996
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=329.90 Aligned_cols=289 Identities=22% Similarity=0.366 Sum_probs=238.1
Q ss_pred ccccccccCcEEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 174 SQEIQAHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspd----g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
.+.+++|.+.|++++|+|+ +.+||||+.|++|+||++.+...
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---------------------------------- 70 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---------------------------------- 70 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE----------------------------------
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe----------------------------------
Confidence 3566799999999999985 66999999999999999875321
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEE
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~ 327 (626)
.....+.+|...|.+++|++++ .+++++.|++|++||+.+++.+..+. +...+.+++|+| ++++|++|
T Consensus 71 ---------~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g 140 (321)
T 3ow8_A 71 ---------DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATG 140 (321)
T ss_dssp ---------EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEE
T ss_pred ---------eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEE
Confidence 1234678999999999999987 89999999999999999999988885 777899999999 99999999
Q ss_pred eCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 328 SIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
+.||.|++||+.+++.. .+..+...|.+++|+|+|++|++|+.||.|++||+.+++.... + ..|..+|++++
T Consensus 141 ~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~-~------~~h~~~v~~l~ 213 (321)
T 3ow8_A 141 THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT-L------EGHAMPIRSLT 213 (321)
T ss_dssp CTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-E------CCCSSCCCEEE
T ss_pred cCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-E------cccCCceeEEE
Confidence 99999999999887654 4567778899999999999999999999999999988764322 2 23457899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCcc
Q 006909 407 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 486 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 486 (626)
|+|++ .+|++++.|+.|++||+...........|...|.+++|+|++++|++++.|++|++||+.++.
T Consensus 214 ~spd~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~----------- 281 (321)
T 3ow8_A 214 FSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT----------- 281 (321)
T ss_dssp ECTTS-CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------
T ss_pred EcCCC-CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE-----------
Confidence 99997 799999999999999988665555556688999999999999999999999999999997641
Q ss_pred ceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909 487 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD 566 (626)
Q Consensus 487 ~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd 566 (626)
.+.. +..+...+.+++|+|+|+++++++. |+.|++||
T Consensus 282 ----------~~~~--------------------------------~~~h~~~v~~v~~s~~g~~l~s~~~-d~~i~vwd 318 (321)
T 3ow8_A 282 ----------CVHT--------------------------------FFDHQDQVWGVKYNGNGSKIVSVGD-DQEIHIYD 318 (321)
T ss_dssp ----------EEEE--------------------------------ECCCSSCEEEEEECTTSSEEEEEET-TCCEEEEE
T ss_pred ----------EEEE--------------------------------EcCCCCcEEEEEECCCCCEEEEEeC-CCeEEEEe
Confidence 1000 1122334566777788887888777 78888888
Q ss_pred cc
Q 006909 567 VT 568 (626)
Q Consensus 567 ~~ 568 (626)
.+
T Consensus 319 ~p 320 (321)
T 3ow8_A 319 CP 320 (321)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-39 Score=326.45 Aligned_cols=252 Identities=16% Similarity=0.279 Sum_probs=219.5
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
+.+.++|++|.+.|++++|+|+|++||+|+.||+|+|||+.+
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~-------------------------------------- 44 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET-------------------------------------- 44 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--------------------------------------
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--------------------------------------
Confidence 345678899999999999999999999999999999999987
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEe
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s 328 (626)
...+..+.+|..+|.+++|+|++ +|++|+.|++|++||+.+++++..+. |...|.+++|+| ++.+|++|+
T Consensus 45 -------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs 116 (304)
T 2ynn_A 45 -------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGS 116 (304)
T ss_dssp -------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEE
T ss_pred -------CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEEC
Confidence 33467788899999999999987 89999999999999999999988885 899999999999 999999999
Q ss_pred CCCcEEEEeCCCCe-E-EEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909 329 IDGKVRIWGVCEKR-V-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 329 ~dg~v~iwd~~~~~-~-~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 405 (626)
.|++|++||++++. + ..+.+|...|.+++|+| ++..|++|+.|++|++||+........... .+...+..+
T Consensus 117 ~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~------~~~~~v~~~ 190 (304)
T 2ynn_A 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT------GQERGVNYV 190 (304)
T ss_dssp TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC------CCTTCEEEE
T ss_pred CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc------CCcCcEEEE
Confidence 99999999998763 3 34678999999999999 678999999999999999987654332211 223678999
Q ss_pred EEcC--CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909 406 QFSR--DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 406 ~~s~--~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~ 475 (626)
.|+| ++ .+|++++.|++|++||+.+.........|...|..++|+|++++|++|+.||+|++||+.++.
T Consensus 191 ~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 191 DYYPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp EECCSTTC-CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEEcCCC-CEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9987 44 699999999999999988766555555688999999999999999999999999999998763
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5e-39 Score=327.87 Aligned_cols=287 Identities=17% Similarity=0.337 Sum_probs=236.8
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
....++|++|.+.|++++|+|++++|++|+.||+|+|||+.+
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~-------------------------------------- 86 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-------------------------------------- 86 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--------------------------------------
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--------------------------------------
Confidence 345678899999999999999999999999999999999887
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe----eeEee-cCCCCeEEEEEeeCCCCEE
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNVF-DHHNYVTCVQFNPIDDNYF 324 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~----~~~~~-~~~~~v~~~~~~p~~~~~l 324 (626)
...+..+..|...|.+++|+|++ +|++++.|+.|++||+.++. ....+ .|...|.++.|++ ++ .+
T Consensus 87 -------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l 157 (340)
T 1got_B 87 -------TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DN-QI 157 (340)
T ss_dssp -------CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-TT-EE
T ss_pred -------CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC-CC-cE
Confidence 34466778899999999999988 89999999999999997653 33333 5899999999998 54 58
Q ss_pred EEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909 325 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 325 ~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~ 403 (626)
++++.|++|++||+.+++... +..|...|.+++|+|+++++++|+.||.|++||+++...... ...|...|+
T Consensus 158 ~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~-------~~~h~~~v~ 230 (340)
T 1got_B 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-------FTGHESDIN 230 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE-------ECCCSSCEE
T ss_pred EEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE-------EcCCcCCEE
Confidence 999999999999999887654 567899999999999999999999999999999987764322 223457899
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCcceee--eeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCc
Q 006909 404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHK--FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 481 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 481 (626)
+++|+|++ .+|++++.|++|++||++..... +....+...|.+++|+|+|++|++|+.|+.|++||+.++.
T Consensus 231 ~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~------ 303 (340)
T 1got_B 231 AICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD------ 303 (340)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------
T ss_pred EEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc------
Confidence 99999997 79999999999999998754433 3222344579999999999999999999999999987631
Q ss_pred cCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCC
Q 006909 482 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEK 561 (626)
Q Consensus 482 ~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~ 561 (626)
.+.. +.+|...|..++|+|||+++++++. |+.
T Consensus 304 ---------------~~~~--------------------------------~~~h~~~v~~~~~s~dg~~l~s~s~-D~~ 335 (340)
T 1got_B 304 ---------------RAGV--------------------------------LAGHDNRVSCLGVTDDGMAVATGSW-DSF 335 (340)
T ss_dssp ---------------EEEE--------------------------------EECCSSCEEEEEECTTSSCEEEEET-TSC
T ss_pred ---------------EeeE--------------------------------eecCCCcEEEEEEcCCCCEEEEEcC-Ccc
Confidence 0000 1223445677788888888888888 788
Q ss_pred CCCCC
Q 006909 562 LPLWD 566 (626)
Q Consensus 562 i~vwd 566 (626)
|++||
T Consensus 336 i~iWd 340 (340)
T 1got_B 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99886
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.2e-39 Score=325.34 Aligned_cols=303 Identities=18% Similarity=0.272 Sum_probs=246.0
Q ss_pred cccccccccccCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
+.+..+|.+|.+.|++++|+|++ ++|+||+.|++|++|++......
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~--------------------------------- 53 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--------------------------------- 53 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE---------------------------------
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc---------------------------------
Confidence 45567899999999999999965 79999999999999998642110
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEE
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~ 327 (626)
...++..+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+ .|...|.+++|+| ++.+|++|
T Consensus 54 -------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~ 125 (319)
T 3frx_A 54 -------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISG 125 (319)
T ss_dssp -------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEE
T ss_pred -------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEE
Confidence 023467888999999999999998 8999999999999999999998887 4999999999999 99999999
Q ss_pred eCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeC------CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 328 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD------GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~------g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
+.|++|++||++...+..+.+|...|.++.++|. +..+++++.|+.|++||+........ ...|...
T Consensus 126 s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-------~~~h~~~ 198 (319)
T 3frx_A 126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-------FIGHNSN 198 (319)
T ss_dssp ETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE-------ECCCCSC
T ss_pred eCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee-------ecCCCCc
Confidence 9999999999998888888899999999999985 45899999999999999987654322 2235689
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCc
Q 006909 402 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 481 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 481 (626)
|++++|+|++ .+|++++.|+.|++||+.......... +...|.+++|+|++.+|++++.+ .+++|+++....
T Consensus 199 v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~----- 270 (319)
T 3frx_A 199 INTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYL----- 270 (319)
T ss_dssp EEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEE-CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEE-----
T ss_pred EEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCee-----
Confidence 9999999998 799999999999999988655444443 45689999999999999998855 599999875310
Q ss_pred cCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCC
Q 006909 482 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEK 561 (626)
Q Consensus 482 ~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~ 561 (626)
.-...+.-. .....+...+.+++|+|||++|++++. |+.
T Consensus 271 -----------------~~~~~~~~~-----------------------~~~~~~~~~v~~~~~spdg~~l~sg~~-Dg~ 309 (319)
T 3frx_A 271 -----------------VDDLRPEFA-----------------------GYSKAAEPHAVSLAWSADGQTLFAGYT-DNV 309 (319)
T ss_dssp -----------------EEEECCCCT-----------------------TCCGGGCCCEEEEEECTTSSEEEEEET-TSC
T ss_pred -----------------eeccCcccc-----------------------ccccCcCcceeEEEECCCCCEEEEeec-Cce
Confidence 000000000 001122334677899999999999988 899
Q ss_pred CCCCCcccC
Q 006909 562 LPLWDVTID 570 (626)
Q Consensus 562 i~vwd~~~~ 570 (626)
|++||+.++
T Consensus 310 i~vWd~~t~ 318 (319)
T 3frx_A 310 IRVWQVMTA 318 (319)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEeec
Confidence 999998764
No 10
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.1e-39 Score=381.48 Aligned_cols=387 Identities=18% Similarity=0.294 Sum_probs=293.0
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~------------------------------------------ 646 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET------------------------------------------ 646 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT------------------------------------------
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC------------------------------------------
Confidence 45679999999999999999999999999999999987
Q ss_pred cccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeC-CCCEEEEEeCCC
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI-DDNYFISGSIDG 331 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~-~~~~l~s~s~dg 331 (626)
...+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|.+++|+|. ++.++++|+.|+
T Consensus 647 ---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~ 723 (1249)
T 3sfz_A 647 ---GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 723 (1249)
T ss_dssp ---CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTS
T ss_pred ---CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCC
Confidence 34567788999999999999998 99999999999999999999998884 8899999999983 345899999999
Q ss_pred cEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEe--------------------
Q 006909 332 KVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD-------------------- 390 (626)
Q Consensus 332 ~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-------------------- 390 (626)
.|++||+.+++.. ...+|...|++++|+|+++++++++.||.|++||+.+.........
T Consensus 724 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 803 (1249)
T 3sfz_A 724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC 803 (1249)
T ss_dssp CEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred eEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence 9999999988765 4678999999999999999999999999999999976643221100
Q ss_pred ----------------------------eccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCC
Q 006909 391 ----------------------------FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS 442 (626)
Q Consensus 391 ----------------------------~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 442 (626)
.......|...|.+++|+|++ .++++++.|+.|++||..+.........|.
T Consensus 804 ~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~ 882 (1249)
T 3sfz_A 804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLKVADCRGHL 882 (1249)
T ss_dssp CCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTEEEEEECCCS
T ss_pred EEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeeecCCCc
Confidence 000011456789999999997 799999999999999998776666667789
Q ss_pred CCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCC--------------------------------------CCccCC
Q 006909 443 GSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS--------------------------------------SKQKNS 484 (626)
Q Consensus 443 ~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~--------------------------------------~~~~~~ 484 (626)
..|.+++|+|+|++|++++.|+.|++|++.+..... ......
T Consensus 883 ~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1249)
T 3sfz_A 883 SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA 962 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS
T ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccC
Confidence 999999999999999999999999999965310000 000011
Q ss_pred ccceeeeccCCcEEE-------------------------------EecCCCCcccccccCCC-----------------
Q 006909 485 VRSCEHFFSEGVSVA-------------------------------VQWPGIGTEQKSLCSSS----------------- 516 (626)
Q Consensus 485 ~~~~~~~~~~g~~~a-------------------------------v~~s~~~~~l~~~~~~~----------------- 516 (626)
...+..++|++..++ ++|+|++..++..+.+.
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1042 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQA 1042 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBC
T ss_pred cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEec
Confidence 122223333332222 33444444433322221
Q ss_pred --------------------ccccCccccccCCCC--cccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCC
Q 006909 517 --------------------LRDCSQKWDNLETAP--WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGY 574 (626)
Q Consensus 517 --------------------~~~~~~~w~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~ 574 (626)
.++.+.+|+...... .+..+...+.+++|+|||+++++++. |+.|++||+.++.
T Consensus 1043 ~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~-d~~v~iwd~~~~~--- 1118 (1249)
T 3sfz_A 1043 HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSA-DKTAKIWSFDLLS--- 1118 (1249)
T ss_dssp CSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECC-SSCCCEECSSSSS---
T ss_pred CCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcC-CCcEEEEECCCcc---
Confidence 122344455433222 34456777999999999999999998 7999999998872
Q ss_pred CCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeeec
Q 006909 575 CQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNY 620 (626)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~ 620 (626)
+......|.+.+ .++++ +|.+||||+.||+|++|+..
T Consensus 1119 --------~~~~l~~h~~~v~~~~~s~-dg~~lat~~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A 1119 --------PLHELKGHNGCVRCSAFSL-DGILLATGDDNGEIRIWNVS 1157 (1249)
T ss_dssp --------CSBCCCCCSSCEEEEEECS-SSSEEEEEETTSCCCEEESS
T ss_pred --------eeeeeccCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECC
Confidence 122233344433 34556 89999999999999999964
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.8e-38 Score=321.76 Aligned_cols=287 Identities=16% Similarity=0.288 Sum_probs=235.8
Q ss_pred ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
...++|++|.+.|++++|+|++++||||+.||+|+|||..++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~-------------------------------------- 96 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT-------------------------------------- 96 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------------------------------------
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------------------------------------
Confidence 456788999999999999999999999999999999998762
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC------eeeEee-cCCCCeEEEEEeeCCCCE
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN------QCLNVF-DHHNYVTCVQFNPIDDNY 323 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~------~~~~~~-~~~~~v~~~~~~p~~~~~ 323 (626)
.....+..|...|.+++|+|++ .|++++.|+.+++|++... .....+ .|...|.+++|+| ++..
T Consensus 97 -------~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~ 168 (354)
T 2pbi_B 97 -------NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQ 168 (354)
T ss_dssp -------CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSE
T ss_pred -------CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeC-CCCE
Confidence 3355667788999999999998 9999999999999998643 122233 5999999999999 9999
Q ss_pred EEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEee--CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909 324 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 400 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp--~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 400 (626)
|++++.|++|++||+.+++.+. +.+|...|.+++|+| +|++|++|+.||.|++||++++..... + ..|..
T Consensus 169 l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~-~------~~h~~ 241 (354)
T 2pbi_B 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA-F------ETHES 241 (354)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE-E------CCCSS
T ss_pred EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE-e------cCCCC
Confidence 9999999999999999887654 667899999999988 578999999999999999998765322 2 23458
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee--eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCC
Q 006909 401 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 478 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~ 478 (626)
.|++++|+|++ .+|++++.|++|++||++.... .+....+...+.+++|+|+|++|++|+.|+.|++||+.++.
T Consensus 242 ~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~--- 317 (354)
T 2pbi_B 242 DVNSVRYYPSG-DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS--- 317 (354)
T ss_dssp CEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS---
T ss_pred CeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc---
Confidence 99999999997 7999999999999999875433 33333344578999999999999999999999999987641
Q ss_pred CCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCC
Q 006909 479 SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWP 558 (626)
Q Consensus 479 ~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~ 558 (626)
.+.. +.+|...+.+++|+|||++++++++
T Consensus 318 ------------------~~~~--------------------------------l~~h~~~v~~l~~spdg~~l~sgs~- 346 (354)
T 2pbi_B 318 ------------------RVSI--------------------------------LFGHENRVSTLRVSPDGTAFCSGSW- 346 (354)
T ss_dssp ------------------EEEE--------------------------------ECCCSSCEEEEEECTTSSCEEEEET-
T ss_pred ------------------eEEE--------------------------------EECCCCcEEEEEECCCCCEEEEEcC-
Confidence 1100 1223445677788888888888888
Q ss_pred CCCCCCCC
Q 006909 559 AEKLPLWD 566 (626)
Q Consensus 559 d~~i~vwd 566 (626)
|+.|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 78888885
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4e-38 Score=321.85 Aligned_cols=305 Identities=21% Similarity=0.330 Sum_probs=239.1
Q ss_pred cccccccccccC-cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 171 LYTSQEIQAHKG-CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 171 ~~~~~~l~~H~~-~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
+.+.++|.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++...+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~-------------------------------- 52 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC-------------------------------- 52 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE--------------------------------
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee--------------------------------
Confidence 345678889988 99999999999999999999999999987632110
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEeeCCCCEEE
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFI 325 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p~~~~~l~ 325 (626)
......+|...|.+++|+|++ +|++|+.|++|++||+..+. ++..+ .|...|.+++|+| ++++|+
T Consensus 53 ----------~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~ 121 (345)
T 3fm0_A 53 ----------KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLA 121 (345)
T ss_dssp ----------EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred ----------eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEE
Confidence 012235899999999999988 89999999999999998764 45555 4899999999999 999999
Q ss_pred EEeCCCcEEEEeCCCCe----EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 326 SGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 326 s~s~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
+|+.|++|++||+..+. ...+..|...|.+++|+|++++|++++.|+.|++||......... .. ...|...
T Consensus 122 s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~-~~----~~~h~~~ 196 (345)
T 3fm0_A 122 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC-AT----LEGHEST 196 (345)
T ss_dssp EEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEE-EE----ECCCSSC
T ss_pred EEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEE-EE----ecCCCCc
Confidence 99999999999998753 234567889999999999999999999999999999987653221 11 2334589
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-----------------eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909 402 ITGIQFSRDESQRIMITSEDSKLRILDGVDV-----------------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 464 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-----------------~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg 464 (626)
|++++|+|+| .+|++++.|++|+|||.... ...+.+ .|...|.+++|+|++..|++++.|+
T Consensus 197 v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~ 274 (345)
T 3fm0_A 197 VWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDD 274 (345)
T ss_dssp EEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTS
T ss_pred eEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCC
Confidence 9999999998 79999999999999984210 111111 2778999999999999999999999
Q ss_pred cEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCcc
Q 006909 465 RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSW 544 (626)
Q Consensus 465 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 544 (626)
.|++|+......+... ...+. . .....|...|.+++
T Consensus 275 ~i~vw~~~~~~~~~~~----------------~~~~~--------~--------------------~~~~~h~~~V~~v~ 310 (345)
T 3fm0_A 275 AIRVFQEDPNSDPQQP----------------TFSLT--------A--------------------HLHQAHSQDVNCVA 310 (345)
T ss_dssp CEEEEEECTTSCTTSC----------------CEEEE--------E--------------------EETTSSSSCEEEEE
T ss_pred eEEEEEeCCCCCccee----------------eEEEE--------e--------------------eecccccCcEeEeE
Confidence 9999998764211100 00000 0 00124555688889
Q ss_pred ccCCCC-cccccCCCCCCCCCCCcccC
Q 006909 545 FSNDGP-CRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 545 ~s~dg~-~l~s~~~~d~~i~vwd~~~~ 570 (626)
|+|++. ++++++. |+.|++|++.+.
T Consensus 311 ~~p~~~~~laS~s~-Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 311 WNPKEPGLLASCSD-DGEVAFWKYQRP 336 (345)
T ss_dssp ECSSSTTEEEEEET-TSCEEEEEECC-
T ss_pred EeCCCceEEEEcCC-CCcEEEEEecCC
Confidence 999885 7888888 899999999876
No 13
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.6e-39 Score=334.23 Aligned_cols=299 Identities=18% Similarity=0.334 Sum_probs=242.0
Q ss_pred ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
...+.++|++|.+.|++++|+|+|++||||+.||+|+|||+.+
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~------------------------------------- 97 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT------------------------------------- 97 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT-------------------------------------
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------------------------------------
Confidence 4556788999999999999999999999999999999999987
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe-------eeEee-cCCCCeEEEEEeeCC
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-------CLNVF-DHHNYVTCVQFNPID 320 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~-------~~~~~-~~~~~v~~~~~~p~~ 320 (626)
......+.+|...|.+++|+|++ +|++|+.|+.|++||+.+.. ....+ +|...|.++.|.|.+
T Consensus 98 --------~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~ 169 (380)
T 3iz6_a 98 --------SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ 169 (380)
T ss_dssp --------TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS
T ss_pred --------CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCC
Confidence 33466778899999999999998 99999999999999986532 12223 588999999999955
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEe------ccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeecc
Q 006909 321 DNYFISGSIDGKVRIWGVCEKRVVDW------ADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 393 (626)
Q Consensus 321 ~~~l~s~s~dg~v~iwd~~~~~~~~~------~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~ 393 (626)
+..|++|+.|++|++||+.+++.... .+|...|.+++|+| ++++|++|+.||+|++||++........+
T Consensus 170 ~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~---- 245 (380)
T 3iz6_a 170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY---- 245 (380)
T ss_dssp SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE----
T ss_pred CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE----
Confidence 67899999999999999999887653 46788999999987 88999999999999999997543333222
Q ss_pred ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceee--eeecC-----CCCCeEEEEEcCCCCEEEEEeCCccE
Q 006909 394 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK--FKGLP-----KSGSQMSASFTTTGKHIISIGDDCRV 466 (626)
Q Consensus 394 ~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~-----~~~~v~~~~~sp~g~~l~s~s~dg~I 466 (626)
..|...|++++|+|++ .+|++++.|++|++||+++.... +.... +...|.+++|+|+|++|++|+.||.|
T Consensus 246 --~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i 322 (380)
T 3iz6_a 246 --HGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC 322 (380)
T ss_dssp --CCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred --CCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE
Confidence 2345899999999997 79999999999999998865433 22211 12348999999999999999999999
Q ss_pred EEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCcccc
Q 006909 467 YVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFS 546 (626)
Q Consensus 467 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s 546 (626)
++||+..+.. ...+. .....|...|..++|+
T Consensus 323 ~vwd~~~~~~--------------------~~~~~-----------------------------~~~~~h~~~v~~l~~s 353 (380)
T 3iz6_a 323 YVWDTLLAEM--------------------VLNLG-----------------------------TLQNSHEGRISCLGLS 353 (380)
T ss_dssp EEEETTTCCE--------------------EEEEC-----------------------------CSCSSCCCCCCEEEEC
T ss_pred EEEECCCCce--------------------EEEEe-----------------------------cccCCCCCceEEEEEC
Confidence 9999865310 00000 0012455678899999
Q ss_pred CCCCcccccCCCCCCCCCCCcccC
Q 006909 547 NDGPCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 547 ~dg~~l~s~~~~d~~i~vwd~~~~ 570 (626)
|||++++++++ |+.|++|++...
T Consensus 354 ~dg~~l~sgs~-D~~i~iW~~~~~ 376 (380)
T 3iz6_a 354 SDGSALCTGSW-DKNLKIWAFSGH 376 (380)
T ss_dssp SSSSEEEEECT-TSCEEEEECCSS
T ss_pred CCCCEEEEeeC-CCCEEEEecCCC
Confidence 99999999999 899999998754
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-37 Score=317.65 Aligned_cols=310 Identities=18% Similarity=0.226 Sum_probs=239.6
Q ss_pred cccccccccccCcEEEEEE-----cC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCC
Q 006909 171 LYTSQEIQAHKGCIWTLKF-----SP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 244 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~f-----sp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (626)
..+.++|++|++.|++++| ++ ++++||||+.|++|+|||+.+.....
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------------------- 63 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG--------------------------- 63 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS---------------------------
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc---------------------------
Confidence 3456788999999999999 77 99999999999999999987532100
Q ss_pred ceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCC
Q 006909 245 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDN 322 (626)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~ 322 (626)
....+...+.+|...|.+++|+|++ ++++++.|++|++||+.+++++..+. |...|.+++|+| +++
T Consensus 64 -----------~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~ 131 (343)
T 2xzm_R 64 -----------YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNR 131 (343)
T ss_dssp -----------BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STT
T ss_pred -----------ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCC
Confidence 0023456788999999999999987 89999999999999999999988874 999999999999 999
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEec---cCCCCeEEEEEeeCC----------CEEEEEecCCcEEEEEcCCCceeeeEE
Q 006909 323 YFISGSIDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDG----------KGFIVGSITGTCHFYKASGNDLKLEKV 389 (626)
Q Consensus 323 ~l~s~s~dg~v~iwd~~~~~~~~~~---~~~~~i~~i~~sp~g----------~~l~~g~~dg~i~i~d~~~~~~~~~~~ 389 (626)
+|++++.|++|++||+......... .|...|.+++|+|++ .++++++.||.|++||... .. ...+
T Consensus 132 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~-~~~~ 209 (343)
T 2xzm_R 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QI-RYTF 209 (343)
T ss_dssp EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EE-EEEE
T ss_pred EEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ce-eEEE
Confidence 9999999999999999865554433 678899999999987 7899999999999999432 21 1122
Q ss_pred eeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909 390 DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW 469 (626)
Q Consensus 390 ~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iw 469 (626)
..|...|++++|+|+| .+|++++.|+.|++||+...........+...|.+++|+|++++++++ .|+.|++|
T Consensus 210 ------~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw 281 (343)
T 2xzm_R 210 ------KAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIF 281 (343)
T ss_dssp ------ECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEE
T ss_pred ------cCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEE
Confidence 2345789999999998 799999999999999984322221222245679999999999988765 57889999
Q ss_pred ECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCC
Q 006909 470 NYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDG 549 (626)
Q Consensus 470 d~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg 549 (626)
++.+..... ...+. ... +.. ......+...+.+++|+|+|
T Consensus 282 ~~~~~~~~~---------~~~~~-----------~~~--~~~------------------~~~~~~~~~~v~~~~~sp~g 321 (343)
T 2xzm_R 282 NLMTQSKAP---------VCTIE-----------AEP--ITK------------------AEGQKGKNPQCTSLAWNALG 321 (343)
T ss_dssp ESSSCCSCS---------EEECC-----------CCS--GGG------------------BTTBCCSCCCEEEEEECSSS
T ss_pred EeCCCCCCc---------eEEee-----------cCc--chh------------------hhhhcCCCCceEEEEECCCC
Confidence 998642110 00000 000 000 00122345567889999999
Q ss_pred CcccccCCCCCCCCCCCcccC
Q 006909 550 PCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 550 ~~l~s~~~~d~~i~vwd~~~~ 570 (626)
+++++++. |+.|++|++.++
T Consensus 322 ~~l~sg~~-Dg~v~~w~~~~g 341 (343)
T 2xzm_R 322 KKLFAGFT-DGVIRTFSFETS 341 (343)
T ss_dssp CCEEEEET-TSEEEEEEEEEE
T ss_pred CeEEEecC-CceEEEEEEEcc
Confidence 99999988 899999998775
No 15
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.8e-38 Score=357.06 Aligned_cols=343 Identities=14% Similarity=0.199 Sum_probs=261.9
Q ss_pred ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
.+.+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~--------------------------------------- 44 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET--------------------------------------- 44 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT---------------------------------------
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC---------------------------------------
Confidence 45677889999999999999999999999999999999987
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeC
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~ 329 (626)
+..+..+.+|...|.+++|+|++ +|++++.||.|++||+.+++.+..+. |...|++++|+| ++.+|++++.
T Consensus 45 ------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 117 (814)
T 3mkq_A 45 ------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSD 117 (814)
T ss_dssp ------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEET
T ss_pred ------CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcC
Confidence 34467788999999999999987 89999999999999999999988885 899999999999 9999999999
Q ss_pred CCcEEEEeCCCC-eE-EEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 330 DGKVRIWGVCEK-RV-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 330 dg~v~iwd~~~~-~~-~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
||.|++||+.++ .. .....|...|.+++|+| +++.+++++.||.|++||+.+......... .+...+.+++
T Consensus 118 dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~------~~~~~v~~~~ 191 (814)
T 3mkq_A 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT------GQERGVNYVD 191 (814)
T ss_dssp TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC------CCTTCCCEEE
T ss_pred CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec------CCCCCEEEEE
Confidence 999999999876 33 34667889999999999 899999999999999999987665433221 1236899999
Q ss_pred EcC--CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCC-CccC
Q 006909 407 FSR--DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-KQKN 483 (626)
Q Consensus 407 ~s~--~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~ 483 (626)
|+| ++ .++++++.||.|++||..+.........|...|.+++|+|++++|++++.||.|++||+.++..... ....
T Consensus 192 ~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~ 270 (814)
T 3mkq_A 192 YYPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270 (814)
T ss_dssp ECCSTTC-CEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS
T ss_pred EEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC
Confidence 999 76 7999999999999999876655555555888999999999999999999999999999987632211 1122
Q ss_pred CccceeeeccCCc--EEEEe------------------cCCCCcccccccCCCcccc------CccccccCCC------C
Q 006909 484 SVRSCEHFFSEGV--SVAVQ------------------WPGIGTEQKSLCSSSLRDC------SQKWDNLETA------P 531 (626)
Q Consensus 484 ~~~~~~~~~~~g~--~~av~------------------~s~~~~~l~~~~~~~~~~~------~~~w~~~~~~------~ 531 (626)
....++.++|+|. .++.+ ++|++..++.......... ...|...... .
T Consensus 271 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (814)
T 3mkq_A 271 ERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTK 350 (814)
T ss_dssp SSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCE
T ss_pred CcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeee
Confidence 3445566777765 23332 2223333332111110000 0011111110 1
Q ss_pred cccCCCcccCCccccCCCCcccccCCCCCCCCCCCccc
Q 006909 532 WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI 569 (626)
Q Consensus 532 ~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~ 569 (626)
....+...+..++|+|||+++++++ ++.+.+|++..
T Consensus 351 ~~~~~~~~~~~~~~spdg~~la~~~--~~~~~i~~~~~ 386 (814)
T 3mkq_A 351 ELGSVDVFPQSLAHSPNGRFVTVVG--DGEYVIYTALA 386 (814)
T ss_dssp EECCCSSCCSEEEECTTSSEEEEEE--TTEEEEEETTT
T ss_pred cCCCCccCCceeEECCCCCEEEEec--CCEEEEEECcc
Confidence 1123344578899999999888877 57888888654
No 16
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.1e-37 Score=340.32 Aligned_cols=413 Identities=17% Similarity=0.153 Sum_probs=289.4
Q ss_pred ccccccccccCc-EEEEEEcC--CCCEEEEEeCCCcEEEEEcCCC--------cc-----------eeeeecCCCCCccC
Q 006909 172 YTSQEIQAHKGC-IWTLKFSP--DGRYLASGGEDGVVRIWHVTSV--------AA-----------SCKSFTDDGGFGSN 229 (626)
Q Consensus 172 ~~~~~l~~H~~~-V~~l~fsp--dg~~Latgs~Dg~i~iwd~~~~--------~~-----------~~~~~~~~~~~~~~ 229 (626)
...+.+.+|.+. |++++|+| ++++||+|+.||.|+|||+.++ .. ....|.+++..+..
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 456678899999 99999999 9999999999999999999644 11 22233333333222
Q ss_pred CCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-
Q 006909 230 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD- 306 (626)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~- 306 (626)
.... ......+. +|+ ....+..+.+|...|.+++|+|++ .+++++.|+.|++||+.+++.+..+.
T Consensus 134 ~~~~-------~~~~~~v~----~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~ 201 (615)
T 1pgu_A 134 VGEG-------RDNFGVFI----SWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT 201 (615)
T ss_dssp EECC-------SSCSEEEE----ETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS
T ss_pred eccC-------CCCccEEE----EEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc
Confidence 1111 00001111 122 245677888999999999999987 79999999999999999999988886
Q ss_pred CCC---CeEEEEEeeCC-CCEEEEEeCCCcEEEEeCCCCeEEEec-----cCCCCeEEEEEeeCCCEEEEEecCCcEEEE
Q 006909 307 HHN---YVTCVQFNPID-DNYFISGSIDGKVRIWGVCEKRVVDWA-----DVRDVISAICYIPDGKGFIVGSITGTCHFY 377 (626)
Q Consensus 307 ~~~---~v~~~~~~p~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~-----~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~ 377 (626)
|.. .|.+++|+| + +++|++++.||.|++||+.+++..... .|...|.+++|+ ++++|++++.||.|++|
T Consensus 202 ~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~w 279 (615)
T 1pgu_A 202 HHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVW 279 (615)
T ss_dssp SSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEE
T ss_pred cCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEE
Confidence 777 899999999 8 999999999999999999998877765 889999999999 99999999999999999
Q ss_pred EcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCC--------------
Q 006909 378 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSG-------------- 443 (626)
Q Consensus 378 d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-------------- 443 (626)
|+.+.+.... +..+ .......+.++.|. ++ .++++++.|+.|++||+...........|..
T Consensus 280 d~~~~~~~~~-~~~~--~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~ 354 (615)
T 1pgu_A 280 DVTTSKCVQK-WTLD--KQQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGS 354 (615)
T ss_dssp ETTTTEEEEE-EECC--TTCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEE
T ss_pred ECCCCcEEEE-EcCC--CCcccCceeEEEeC-CC-CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEEC
Confidence 9997765332 2222 12223578888886 54 6999999999999999875433333333444
Q ss_pred -------------------CeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCC--------------------------
Q 006909 444 -------------------SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS-------------------------- 478 (626)
Q Consensus 444 -------------------~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~-------------------------- 478 (626)
.|.+++| +++.+|++++.|+.|++|++.+.....
T Consensus 355 ~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 433 (615)
T 1pgu_A 355 YDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ 433 (615)
T ss_dssp TTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEE
T ss_pred CCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEe
Confidence 4444444 335566666666666666654311000
Q ss_pred --CC-------c--------------------cCCcc--------c--eeeeccCCcEEEEecCCCCcccccccCCCccc
Q 006909 479 --SK-------Q--------------------KNSVR--------S--CEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRD 519 (626)
Q Consensus 479 --~~-------~--------------------~~~~~--------~--~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~ 519 (626)
.. + .+.+. . .....+.+.+.+++|+|++..++....+ +
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---g 510 (615)
T 1pgu_A 434 SFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM---G 510 (615)
T ss_dssp TTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT---S
T ss_pred ccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCC---C
Confidence 00 0 00000 0 0011234566778888888877765544 3
Q ss_pred cCccccccCCCC--cccC-CCcccCCccccC----------CCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhh
Q 006909 520 CSQKWDNLETAP--WIRD-SERFSLGSWFSN----------DGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQ 586 (626)
Q Consensus 520 ~~~~w~~~~~~~--~~~~-~~~~~~~~~~s~----------dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 586 (626)
.+.+|+...... .+.. +...++.++|+| +++++++++. |+.|++||+.++. .+...
T Consensus 511 ~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~----------~~~~~ 579 (615)
T 1pgu_A 511 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL-DTNIFIYSVKRPM----------KIIKA 579 (615)
T ss_dssp CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET-TSCEEEEESSCTT----------CCEEE
T ss_pred eEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcC-CCcEEEEECCCCc----------eechh
Confidence 466676644332 2333 777899999999 9999999998 7999999998862 11122
Q ss_pred hccCCccc--cccccccceEEEEecCCceEeeeeec
Q 006909 587 CLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNY 620 (626)
Q Consensus 587 ~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~ 620 (626)
...|...+ .++++ +|. |+|++.||+|++|++.
T Consensus 580 ~~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 580 LNAHKDGVNNLLWET-PST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp TTSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEEEC
T ss_pred hhcCccceEEEEEcC-CCC-eEEecCCceEEEEeee
Confidence 23333333 34555 788 9999999999999963
No 17
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-38 Score=361.25 Aligned_cols=244 Identities=13% Similarity=0.115 Sum_probs=193.7
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
.+|.+.|++++|+|+|++||+|+.||+|+||+..+..
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~------------------------------------------- 50 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE------------------------------------------- 50 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCE-------------------------------------------
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE-------------------------------------------
Confidence 4899999999999999999999999999999976521
Q ss_pred CCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909 258 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd 337 (626)
... ...|...|.+++|+|+.+|++++.|++|++||+.+++++..+.|...|++++|+| ++++|++|+.||+|++||
T Consensus 51 --~~~-~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd 126 (902)
T 2oaj_A 51 --VVI-KLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDA-SLDWMLIGLQNGSMIVYD 126 (902)
T ss_dssp --EEE-ECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCT-TCSEEEEEETTSCEEEEE
T ss_pred --EEE-EcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECC-CCCEEEEEcCCCcEEEEE
Confidence 111 2347889999999994479999999999999999999999998889999999999 999999999999999999
Q ss_pred CCCCeEEE------------eccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeecc-----------
Q 006909 338 VCEKRVVD------------WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHD----------- 393 (626)
Q Consensus 338 ~~~~~~~~------------~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~----------- 393 (626)
+.++++.. ...|...|.+++|+|+ +..+++|+.||.| +||+++..... .+..+.
T Consensus 127 ~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~-~~~~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 127 IDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQ-SFIYELPPFAPGGDFSE 204 (902)
T ss_dssp TTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEE-EECCCBCTTCCCSTTCC
T ss_pred CCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEE-EEecccCCcCCCccccc
Confidence 99887642 2457889999999996 5789999999999 99999876432 222220
Q ss_pred -ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeee-------ec-----------CCCCCeEEEEEc---
Q 006909 394 -RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK-------GL-----------PKSGSQMSASFT--- 451 (626)
Q Consensus 394 -~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~-------~~-----------~~~~~v~~~~~s--- 451 (626)
....|...|++++|+|+| .+|++++.|++|++||+.+...... .+ .+...|.+++|+
T Consensus 205 ~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~ 283 (902)
T 2oaj_A 205 KTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN 283 (902)
T ss_dssp CTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECS
T ss_pred ccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecC
Confidence 012234789999999997 7999999999999999875433221 11 134478999995
Q ss_pred -CCC-CEEEEEeCC-----ccEEEEEC
Q 006909 452 -TTG-KHIISIGDD-----CRVYVWNY 471 (626)
Q Consensus 452 -p~g-~~l~s~s~d-----g~I~iwd~ 471 (626)
|++ .+|++|+.| ..+.+|++
T Consensus 284 ~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 284 NPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp STTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 443 456666554 26777763
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.9e-38 Score=320.68 Aligned_cols=289 Identities=16% Similarity=0.225 Sum_probs=221.3
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 177 IQAHKGCIWTLKFSPDGRYLASGGE------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 177 l~~H~~~V~~l~fspdg~~Latgs~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
..+|++.|++++|||||++||+|+. |+.|++|+..++...
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~---------------------------------- 83 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN---------------------------------- 83 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C----------------------------------
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc----------------------------------
Confidence 3479999999999999999999998 677888887653211
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEe-----ecCCCCeEEEEEeeCCCCEEE
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-----FDHHNYVTCVQFNPIDDNYFI 325 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~ 325 (626)
........+|...|++++|+|++.+++++.||+|+|||+.+++.... ..|...|++++|+| ++++|+
T Consensus 84 -------~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~ 155 (357)
T 4g56_B 84 -------ESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAV 155 (357)
T ss_dssp -------GGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEE
T ss_pred -------eeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEE
Confidence 12234455789999999999999899999999999999988765432 25889999999999 999999
Q ss_pred EEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909 326 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 326 s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~ 403 (626)
+|+.|++|++||+++++.+. +..|...|++++|+|++. .+++++.||.|++||+++.+..... . ...+...++
T Consensus 156 sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~-~----~~~~~~~v~ 230 (357)
T 4g56_B 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI-D----FCASDTIPT 230 (357)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC-C----CTTCCSCEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee-e----ecccccccc
Confidence 99999999999999887664 567899999999999875 7889999999999999877653321 1 122347899
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCC-CEEEEEeCCccEEEEECCCCCCCCCCcc
Q 006909 404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPSSKQK 482 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 482 (626)
+++|+|++..+|++++.|+.|++||+.+.........|...|.+++|+|++ ++|++|+.|++|+|||++++....
T Consensus 231 ~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~---- 306 (357)
T 4g56_B 231 SVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR---- 306 (357)
T ss_dssp EEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE----
T ss_pred chhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE----
Confidence 999999877899999999999999988655555555688999999999987 689999999999999998763211
Q ss_pred CCccceeeeccCCcEEEEecCC-CCcccccccCCCccccCccccc
Q 006909 483 NSVRSCEHFFSEGVSVAVQWPG-IGTEQKSLCSSSLRDCSQKWDN 526 (626)
Q Consensus 483 ~~~~~~~~~~~~g~~~av~~s~-~~~~l~~~~~~~~~~~~~~w~~ 526 (626)
.+.+.+.+.+++|+| ++..|++.+.| +.+.+|+.
T Consensus 307 -------~~~H~~~V~~vafsP~d~~~l~s~s~D---g~v~iW~~ 341 (357)
T 4g56_B 307 -------DLSHRDFVTGVAWSPLDHSKFTTVGWD---HKVLHHHL 341 (357)
T ss_dssp -------ECCCSSCEEEEEECSSSTTEEEEEETT---SCEEEEEC
T ss_pred -------ECCCCCCEEEEEEeCCCCCEEEEEcCC---CeEEEEEC
Confidence 112345566777776 56666554443 44666665
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1e-36 Score=306.74 Aligned_cols=252 Identities=29% Similarity=0.525 Sum_probs=212.8
Q ss_pred ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
...+..++.+|.+.|++++|+|+|++||+|+.||.|++|++.++
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~------------------------------------ 55 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------------------------------------ 55 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------------------------------------
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc------------------------------------
Confidence 44556778899999999999999999999999999999998762
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEE
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~ 327 (626)
.....+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+. |...|.+++|+| ++++|++|
T Consensus 56 ---------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~ 125 (312)
T 4ery_A 56 ---------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 125 (312)
T ss_dssp ---------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEE
T ss_pred ---------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEE
Confidence 3456778899999999999987 89999999999999999999888875 889999999999 99999999
Q ss_pred eCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 328 SIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
+.|+.|++||+++++.. .+..|...|.+++|+|++++|++++.||.|++||+.+.+...... ..+...+..++
T Consensus 126 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------~~~~~~~~~~~ 199 (312)
T 4ery_A 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI------DDDNPPVSFVK 199 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC------CSSCCCEEEEE
T ss_pred eCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEe------ccCCCceEEEE
Confidence 99999999999987755 456788999999999999999999999999999998876533221 12246899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCC--eEEEEE-cCCCCEEEEEeCCccEEEEECCCC
Q 006909 407 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS--QMSASF-TTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~-sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
|+|++ .+|++++.|+.|++||+.+.........|... .....+ .+++.+|++|+.||.|++||+.++
T Consensus 200 ~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 200 FSPNG-KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp ECTTS-SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred ECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 99997 79999999999999998865444333333332 223334 467899999999999999999864
No 20
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.8e-37 Score=319.14 Aligned_cols=314 Identities=17% Similarity=0.247 Sum_probs=236.8
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
+|.+.|++++|+|||++||+|+ +++++||++.++............. .....
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~---------------------------~~~~~ 113 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---------------------------KDPEN 113 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------------
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc---------------------------ccccc
Confidence 6999999999999999999987 7899999998765432211000000 00000
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
........+...|.+++|+|++ +|++|+.|++|++||+.+++.+..+. |...|.+++|+| ++++|++++.|++|++|
T Consensus 114 ~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iw 192 (393)
T 1erj_A 114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIW 192 (393)
T ss_dssp -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred ccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEE
Confidence 0011122345569999999998 89999999999999999999888875 899999999999 99999999999999999
Q ss_pred eCCCCeEEEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 337 GVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 337 d~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
|+++++......+...+.+++|+| ++++|++|+.||.|++||+.++...............|...|++++|+|++ .+|
T Consensus 193 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l 271 (393)
T 1erj_A 193 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSV 271 (393)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEE
T ss_pred ECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-CEE
Confidence 999998887777888999999999 899999999999999999988765332111111123566899999999998 799
Q ss_pred EEEeCCCcEEEEeCCcc------------eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC
Q 006909 416 MITSEDSKLRILDGVDV------------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN 483 (626)
Q Consensus 416 ~~~s~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 483 (626)
++++.|+.|++||+... ........|...|.+++|+|++++|++|+.|+.|++||+.++...
T Consensus 272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~------ 345 (393)
T 1erj_A 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL------ 345 (393)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE------
T ss_pred EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE------
Confidence 99999999999997642 112233458889999999999999999999999999999875211
Q ss_pred CccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCC
Q 006909 484 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP 563 (626)
Q Consensus 484 ~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~ 563 (626)
.... .+.+.+.+++|+++. .++|++.++++++. |+.|+
T Consensus 346 ---~~l~-~h~~~v~~v~~~~~~-------------------------------------~~~p~~~~l~sgs~-Dg~i~ 383 (393)
T 1erj_A 346 ---LMLQ-GHRNSVISVAVANGS-------------------------------------SLGPEYNVFATGSG-DCKAR 383 (393)
T ss_dssp ---EEEE-CCSSCEEEEEECSSC-------------------------------------TTCTTCEEEEEEET-TSEEE
T ss_pred ---EEEC-CCCCCEEEEEecCCc-------------------------------------CcCCCCCEEEEECC-CCcEE
Confidence 0111 123445556555431 25678888999988 89999
Q ss_pred CCCcccC
Q 006909 564 LWDVTID 570 (626)
Q Consensus 564 vwd~~~~ 570 (626)
+|++...
T Consensus 384 iW~~~~~ 390 (393)
T 1erj_A 384 IWKYKKI 390 (393)
T ss_dssp EEEEEEC
T ss_pred ECccccc
Confidence 9998754
No 21
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.8e-37 Score=314.74 Aligned_cols=295 Identities=15% Similarity=0.210 Sum_probs=224.3
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
..|...|.+++|+|||++|++++ |+++++||..... +.. ......
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~-----~~~-----------------------------~~~~~~ 71 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWL-----FKD-----------------------------PCAAPN 71 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEE-----ESS-----------------------------GGGTTC
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeee-----ecc-----------------------------ccccCC
Confidence 36788899999999999999888 7788999743200 000 000000
Q ss_pred CCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee-----cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 258 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-----DHHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
.........|...|.+++|+|++.|++|+.||+|+|||+.+++.+..+ .|...|++++|+| ++++|++|+.|++
T Consensus 72 ~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~ 150 (344)
T 4gqb_B 72 EGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDIC 150 (344)
T ss_dssp GGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred cceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCe
Confidence 111222334678899999999999999999999999999988765443 5899999999999 9999999999999
Q ss_pred EEEEeCCCCeEEE-eccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 333 VRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 333 v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
|++||+.+++++. +.+|...|.+++|+|++. .|++++.|++|++||+++.+.... +. ...+...+++++|+|+
T Consensus 151 i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~----~~~~~~~~~~~~~~p~ 225 (344)
T 4gqb_B 151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ-IG----CSAPGYLPTSLAWHPQ 225 (344)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE-CC--------CCCEEEEEECSS
T ss_pred EEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeee-ee----cceeeccceeeeecCC
Confidence 9999999988765 667999999999999885 688999999999999988765432 11 1123467999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCC-CEEEEEeCCccEEEEECCCCCCCCCCccCCcccee
Q 006909 411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE 489 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 489 (626)
+..+|++|+.|++|++||+++.........|...|.+++|+|++ ++|++|+.|++|+|||+.++....
T Consensus 226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~----------- 294 (344)
T 4gqb_B 226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR----------- 294 (344)
T ss_dssp CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-----------
T ss_pred CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-----------
Confidence 77899999999999999988655444445588999999999998 689999999999999998762111
Q ss_pred eeccCCcEEEEecCCCCcccc-cccCCCccccCcccccc
Q 006909 490 HFFSEGVSVAVQWPGIGTEQK-SLCSSSLRDCSQKWDNL 527 (626)
Q Consensus 490 ~~~~~g~~~av~~s~~~~~l~-~~~~~~~~~~~~~w~~~ 527 (626)
...+.+.+.+++|+|++..++ +.+. ++.+.+|..-
T Consensus 295 ~~~H~~~V~~v~~sp~~~~llas~s~---D~~v~~w~v~ 330 (344)
T 4gqb_B 295 SQAHRDFVRDATWSPLNHSLLTTVGW---DHQVVHHVVP 330 (344)
T ss_dssp ECCCSSCEEEEEECSSSTTEEEEEET---TSCEEEEECC
T ss_pred EcCCCCCEEEEEEeCCCCeEEEEEcC---CCeEEEEECC
Confidence 112345677888888877654 3333 3456777763
No 22
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-37 Score=323.36 Aligned_cols=285 Identities=16% Similarity=0.223 Sum_probs=236.0
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd 337 (626)
....+.+|..+|++++|+|++ +|++|+.|++|++||+.+++....+. |...|.+++|+| ++++|++|+.|++|++||
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWD 178 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEE
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEe
Confidence 356788999999999999987 99999999999999999999988885 899999999999 999999999999999999
Q ss_pred CCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909 338 VCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 416 (626)
Q Consensus 338 ~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~ 416 (626)
+.+++.+. +.+|...|.+++|+|++++|++|+.|++|++||+.++..... + ..|...|.++.|+|++ .+++
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~-~------~~h~~~v~~~~~~~~g-~~l~ 250 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT-F------TGHREWVRMVRPNQDG-TLIA 250 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE-E------ECCSSCEEEEEECTTS-SEEE
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE-E------eCCCccEEEEEECCCC-CEEE
Confidence 99877654 668899999999999999999999999999999988765322 2 2345789999999997 7999
Q ss_pred EEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC--------------------CCEEEEEeCCccEEEEECCCCCC
Q 006909 417 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT--------------------GKHIISIGDDCRVYVWNYDELCF 476 (626)
Q Consensus 417 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~--------------------g~~l~s~s~dg~I~iwd~~~~~~ 476 (626)
+++.|++|++||+...........|...|.+++|+|+ |.+|++|+.|++|++||+.++.
T Consensus 251 s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~- 329 (410)
T 1vyh_C 251 SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM- 329 (410)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-
T ss_pred EEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc-
Confidence 9999999999998866555555668899999999996 6799999999999999997631
Q ss_pred CCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccC
Q 006909 477 PSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSAT 556 (626)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~ 556 (626)
.+.. +.+|...+.+++|+|+|+++++++
T Consensus 330 --------------------~~~~--------------------------------~~~h~~~v~~v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 330 --------------------CLMT--------------------------------LVGHDNWVRGVLFHSGGKFILSCA 357 (410)
T ss_dssp --------------------EEEE--------------------------------EECCSSCEEEEEECSSSSCEEEEE
T ss_pred --------------------eEEE--------------------------------EECCCCcEEEEEEcCCCCEEEEEe
Confidence 1100 112334567788999999999988
Q ss_pred CCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccc--ccccccceEEEEecCCceEeeeee
Q 006909 557 WPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR--AISATWGLVIVTAGCDGMIKTFHN 619 (626)
Q Consensus 557 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~dg~~ivt~g~Dg~Irvw~~ 619 (626)
. |+.|++||+.++ +.......|...+. ++++ ++.+|||||.||+|++|+.
T Consensus 358 ~-D~~i~vwd~~~~-----------~~~~~~~~h~~~v~~l~~~~-~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 358 D-DKTLRVWDYKNK-----------RCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp T-TTEEEEECCTTS-----------CCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC-
T ss_pred C-CCeEEEEECCCC-----------ceEEEEcCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeC
Confidence 8 899999999876 22222334444443 4455 7999999999999999974
No 23
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.1e-37 Score=368.22 Aligned_cols=403 Identities=19% Similarity=0.281 Sum_probs=289.8
Q ss_pred ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceee------------------------eecCCCCCc
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCK------------------------SFTDDGGFG 227 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~------------------------~~~~~~~~~ 227 (626)
....++.+|.+.|++++|+|+|++|++|+.||+|++||+.++..... .+++++..+
T Consensus 734 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 813 (1249)
T 3sfz_A 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 813 (1249)
T ss_dssp SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEE
T ss_pred chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEE
Confidence 45567789999999999999999999999999999999987643222 222222222
Q ss_pred cCCCCCeeeecCCCCCCceeecCCcccccc-CCCceee-ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEe
Q 006909 228 SNAKEGKIKFGKKKSSHVPVVIPDEVFQIE-ESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV 304 (626)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~ 304 (626)
.....+.+.+ |+.. ......+ .+|...|.+++|+|++ .+++++.|+.|++||+.++..+..
T Consensus 814 ~~~~~~~v~~----------------~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~ 877 (1249)
T 3sfz_A 814 IVAAKNKVLL----------------FDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD 877 (1249)
T ss_dssp EEEETTEEEE----------------EETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEE
T ss_pred EEEcCCcEEE----------------EEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeee
Confidence 2222222222 2211 1223333 3899999999999987 899999999999999999998887
Q ss_pred ec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-------------------------------------------
Q 006909 305 FD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE------------------------------------------- 340 (626)
Q Consensus 305 ~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~------------------------------------------- 340 (626)
+. |...|.+++|+| ++++|++++.||+|++||+.+
T Consensus 878 ~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1249)
T 3sfz_A 878 CRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956 (1249)
T ss_dssp ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred cCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence 74 888999999999 999999999999999998532
Q ss_pred ------------------------------------Ce-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc
Q 006909 341 ------------------------------------KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 383 (626)
Q Consensus 341 ------------------------------------~~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~ 383 (626)
++ ......|...|++++|+|+|+++++++.||.|++||+.++.
T Consensus 957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 00 11233567789999999999999999999999999998876
Q ss_pred eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909 384 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD 463 (626)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d 463 (626)
... ...+...|.++.|+|++ .+++++.|+.|++||+.+.........|...|.+++|+|++++|++++.|
T Consensus 1037 ~~~--------~~~~~~~v~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d 1106 (1249)
T 3sfz_A 1037 YVF--------LQAHQETVKDFRLLQDS--RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD 1106 (1249)
T ss_dssp EEC--------CBCCSSCEEEEEECSSS--EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCS
T ss_pred eEE--------EecCCCcEEEEEEcCCC--cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCC
Confidence 432 22345899999999985 78999999999999987554444444588899999999999999999999
Q ss_pred ccEEEEECCCCCCCCCC-ccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCC
Q 006909 464 CRVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLG 542 (626)
Q Consensus 464 g~I~iwd~~~~~~~~~~-~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 542 (626)
++|++||+.++...... .....+.++.|+|+|..++++...+...+|.+.++....... ..........+...+++
T Consensus 1107 ~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~v~~ 1183 (1249)
T 3sfz_A 1107 KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA---PISVEEGTATHGGWVTD 1183 (1249)
T ss_dssp SCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCC---CCC-------CCSCCCE
T ss_pred CcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEec---cccccccccccCceEEE
Confidence 99999999876322111 122334455666666666555444444555544332211110 00011112456677999
Q ss_pred ccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeee
Q 006909 543 SWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHN 619 (626)
Q Consensus 543 ~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~ 619 (626)
++|+|||+++++++ +.|++||+.++. ....+..+.... .++++ ||.+|++++.||+|++|++
T Consensus 1184 l~fs~dg~~l~s~~---g~v~vwd~~~g~-----------~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1184 VCFSPDSKTLVSAG---GYLKWWNVATGD-----------SSQTFYTNGTNLKKIHVSP-DFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp EEECTTSSCEEEES---SSEEEBCSSSCB-----------CCCCCCCSSCCCCCCEECS-SSCCEEEECTTCCEEEECC
T ss_pred EEECCCCCEEEECC---CeEEEEECCCCc-----------eeeeeeccCCcccEEEECC-CCCEEEEecCCcEEEEEee
Confidence 99999999998875 689999999872 222233333333 35556 8999999999999999985
No 24
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-37 Score=354.35 Aligned_cols=383 Identities=13% Similarity=0.075 Sum_probs=259.1
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
.|...|++++|+| |++||+++.|++|+|||+.++
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~--------------------------------------------- 89 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ--------------------------------------------- 89 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC---------------------------------------------
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC---------------------------------------------
Confidence 4888999999999 889999999999999999873
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE-----------e-ecCCCCeEEEEEeeCCCCEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN-----------V-FDHHNYVTCVQFNPIDDNYFI 325 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~-----------~-~~~~~~v~~~~~~p~~~~~l~ 325 (626)
+.+..+. |...|++++|+|++ +|++|+.||+|++||+.++++.. . ..|...|++++|+|.++..++
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 2344443 66889999999998 99999999999999999887641 1 137889999999994457899
Q ss_pred EEeCCCcEEEEeCCCCeEEEecc-C------------------CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee
Q 006909 326 SGSIDGKVRIWGVCEKRVVDWAD-V------------------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 386 (626)
Q Consensus 326 s~s~dg~v~iwd~~~~~~~~~~~-~------------------~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~ 386 (626)
+|+.||.| +||+++++...... + ...|.+++|+|+|++|++|+.||.|++||+++++...
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 99999999 99999988665332 2 4679999999999999999999999999998765432
Q ss_pred e-EEe-eccccc---------cCCCCeEEEEEc----CCCCcEEEEEeC-------------------------------
Q 006909 387 E-KVD-FHDRKK---------TSGNKITGIQFS----RDESQRIMITSE------------------------------- 420 (626)
Q Consensus 387 ~-~~~-~~~~~~---------~~~~~i~~l~~s----~~~~~~l~~~s~------------------------------- 420 (626)
. .+. ...+.. .+...|++++|+ |++..++++++.
T Consensus 248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~ 327 (902)
T 2oaj_A 248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY 327 (902)
T ss_dssp EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence 1 010 000000 122356777774 332234444433
Q ss_pred ---------------------------------------------CCcEEEEeCCcceeeee------------------
Q 006909 421 ---------------------------------------------DSKLRILDGVDVIHKFK------------------ 437 (626)
Q Consensus 421 ---------------------------------------------dg~i~iwd~~~~~~~~~------------------ 437 (626)
|+.|++||+.+......
T Consensus 328 ~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~ 407 (902)
T 2oaj_A 328 YANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS 407 (902)
T ss_dssp HHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE
T ss_pred hcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE
Confidence 34444444321100000
Q ss_pred -----------------------ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCC------------cc
Q 006909 438 -----------------------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK------------QK 482 (626)
Q Consensus 438 -----------------------~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~------------~~ 482 (626)
..+|...+..++|+|++++|++|+.|++|++||+.++...... ..
T Consensus 408 ~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h 487 (902)
T 2oaj_A 408 MAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK 487 (902)
T ss_dssp EEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred EEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence 0012223344566899999999999999999999987432110 11
Q ss_pred CCccceeeeccCCcEEEEecCCCCcccccccCCCccc----------cCc-----c------------------ccccCC
Q 006909 483 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRD----------CSQ-----K------------------WDNLET 529 (626)
Q Consensus 483 ~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~----------~~~-----~------------------w~~~~~ 529 (626)
...+.+++|+|+|..+|++...+...+|.+....... .+. + ...+..
T Consensus 488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 567 (902)
T 2oaj_A 488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP 567 (902)
T ss_dssp SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence 2345566788888888777766666777665431100 000 0 000001
Q ss_pred CCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhH-HHHhhhc-cCCccc--cccc-----cc
Q 006909 530 APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQ-RLQQQCL-NNVDDV--RAIS-----AT 600 (626)
Q Consensus 530 ~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~--~~~s-----~~ 600 (626)
...+..|...|++++||||| +||+++. |+.|++||+.++. ..+. .+ .... .|.+.+ .+|+ +
T Consensus 568 ~~~l~~h~~~V~svafSpdG-~lAsgs~-D~tv~lwd~~~~~------~~~~~~~-~~~~~gh~~~V~sv~Fs~~~~~~- 637 (902)
T 2oaj_A 568 STAVHANKGKTSAINNSNIG-FVGIAYA-AGSLMLIDRRGPA------IIYMENI-REISGAQSACVTCIEFVIMEYGD- 637 (902)
T ss_dssp EEEECCCSCSEEEEEECBTS-EEEEEET-TSEEEEEETTTTE------EEEEEEG-GGTCSSCCCCEEEEEEEEEECTT-
T ss_pred eEEEEcCCCcEEEEEecCCc-EEEEEeC-CCcEEEEECCCCe------EEEEeeh-hHhccccccceEEEEEEEEecCC-
Confidence 12345677889999999999 9999998 7999999987651 0000 00 0111 222223 4566 5
Q ss_pred c---ceEEEEecCCceEeeeee
Q 006909 601 W---GLVIVTAGCDGMIKTFHN 619 (626)
Q Consensus 601 d---g~~ivt~g~Dg~Irvw~~ 619 (626)
| +++|++|+.||+|++|++
T Consensus 638 Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 638 DGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp SSSEEEEEEEEETTSEEEEEEE
T ss_pred CCCcceEEEEEecCCcEEEEEE
Confidence 5 589999999999999997
No 25
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-37 Score=323.08 Aligned_cols=342 Identities=18% Similarity=0.198 Sum_probs=244.9
Q ss_pred ccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEc----CCCcce-----eeeecCCCCCccCCCCCeeeecCCCCCCcee
Q 006909 178 QAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHV----TSVAAS-----CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 247 (626)
Q Consensus 178 ~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (626)
..|.+.|++++|+|+|+ +||+|+.||.|++|++ .++... ...+..
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~------------------------- 96 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH------------------------- 96 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC-------------------------
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc-------------------------
Confidence 35669999999999999 9999999999999999 664310 000000
Q ss_pred ecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEE
Q 006909 248 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI 325 (626)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~ 325 (626)
.........+|...|++++|+|++ +|++++.|+.|++|| .+++.+..+. |...|.+++|+| ++++|+
T Consensus 97 ---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 165 (425)
T 1r5m_A 97 ---------PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHII 165 (425)
T ss_dssp ---------CCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEE
T ss_pred ---------cccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEEE
Confidence 000111233578899999999987 899999999999999 5566666664 889999999999 999999
Q ss_pred EEeCCCcEEEEeCCCCeEEEec-cCCCC---------------eEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEE
Q 006909 326 SGSIDGKVRIWGVCEKRVVDWA-DVRDV---------------ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV 389 (626)
Q Consensus 326 s~s~dg~v~iwd~~~~~~~~~~-~~~~~---------------i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~ 389 (626)
+++.|+.|++||+.+++..... .+... +.+++|+|++ .+++++.+|.|++||+.+...... +
T Consensus 166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~-~ 243 (425)
T 1r5m_A 166 SMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGK-L 243 (425)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEE-E
T ss_pred EEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeee-e
Confidence 9999999999999988766533 33333 8999999986 688999999999999987754322 2
Q ss_pred eeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909 390 DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW 469 (626)
Q Consensus 390 ~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iw 469 (626)
..|...|++++|+|++ .+|++++.|+.|++||+...........|...|.+++|+|++ ++++++.|+.|++|
T Consensus 244 ------~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~ 315 (425)
T 1r5m_A 244 ------IGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLW 315 (425)
T ss_dssp ------CCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred ------ccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence 2345789999999997 699999999999999987654444445588899999999999 99999999999999
Q ss_pred ECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCC
Q 006909 470 NYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDG 549 (626)
Q Consensus 470 d~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg 549 (626)
|+.++.. +.. ...+...+..++|+|+|
T Consensus 316 d~~~~~~---------------------~~~--------------------------------~~~~~~~i~~~~~s~~~ 342 (425)
T 1r5m_A 316 SLKQNTL---------------------LAL--------------------------------SIVDGVPIFAGRISQDG 342 (425)
T ss_dssp ETTTTEE---------------------EEE--------------------------------EECTTCCEEEEEECTTS
T ss_pred ECCCCcE---------------------eEe--------------------------------cccCCccEEEEEEcCCC
Confidence 9976410 000 00112235556677777
Q ss_pred CcccccCCCCCCCCCCCcccCCCCCCCChhh----------HHHHhhhccCCc--cc--cccccccceEEEEecCCceEe
Q 006909 550 PCRGSATWPAEKLPLWDVTIDSDGYCQDPQQ----------QRLQQQCLNNVD--DV--RAISATWGLVIVTAGCDGMIK 615 (626)
Q Consensus 550 ~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~--~~--~~~s~~dg~~ivt~g~Dg~Ir 615 (626)
+++++++. ++.|++||+.++.. ....... .........+.. .+ .++++ +|.+|++++.||+|+
T Consensus 343 ~~l~~~~~-dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 419 (425)
T 1r5m_A 343 QKYAVAFM-DGQVNVYDLKKLNS-KSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGS 419 (425)
T ss_dssp SEEEEEET-TSCEEEEECHHHHC---------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCE
T ss_pred CEEEEEEC-CCeEEEEECCCCcc-ceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEE
Confidence 77777776 67888888776510 0000000 001222233322 22 34555 899999999999999
Q ss_pred eeeecC
Q 006909 616 TFHNYG 621 (626)
Q Consensus 616 vw~~~g 621 (626)
+|++-|
T Consensus 420 iw~~~g 425 (425)
T 1r5m_A 420 VVAIPG 425 (425)
T ss_dssp EEECCC
T ss_pred EEeecC
Confidence 999876
No 26
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-36 Score=306.17 Aligned_cols=251 Identities=21% Similarity=0.301 Sum_probs=197.7
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
+.+.++|++|++.|++++|+|+ +||+|+.||+|+||++..+..
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~----------------------------------- 46 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF----------------------------------- 46 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-----------------------------------
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-----------------------------------
Confidence 3456778999999999999988 999999999999999976311
Q ss_pred CccccccCCCceee-cc-CccceEEEEEcCCC-eEEEEeCCCcEEEeccCC-------CeeeEee-cCCCCeEEEEEeeC
Q 006909 251 DEVFQIEESPLQEL-HG-HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------NQCLNVF-DHHNYVTCVQFNPI 319 (626)
Q Consensus 251 ~~~~~~~~~~~~~~-~~-h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~-------~~~~~~~-~~~~~v~~~~~~p~ 319 (626)
.....+ .+ |...|.+++|+|++ +|++|+.|++|++||+.. .+++..+ .|...|.+++|+|
T Consensus 47 --------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 117 (330)
T 2hes_X 47 --------TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN- 117 (330)
T ss_dssp --------EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-
T ss_pred --------EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-
Confidence 112333 34 99999999999987 899999999999999853 3445555 4899999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC----e-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccc
Q 006909 320 DDNYFISGSIDGKVRIWGVCEK----R-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 394 (626)
Q Consensus 320 ~~~~l~s~s~dg~v~iwd~~~~----~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~ 394 (626)
++++|++|+.|++|++||++.. + +..+..|...|.+++|+|++++|++++.|++|++||......... ..
T Consensus 118 ~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~-~~---- 192 (330)
T 2hes_X 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV-AV---- 192 (330)
T ss_dssp TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE-EE----
T ss_pred CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE-EE----
Confidence 9999999999999999999532 2 334678999999999999999999999999999999876532111 11
Q ss_pred cccCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEeCCcc--------eeeeeec-CCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909 395 KKTSGNKITGIQFSRDE-SQRIMITSEDSKLRILDGVDV--------IHKFKGL-PKSGSQMSASFTTTGKHIISIGDDC 464 (626)
Q Consensus 395 ~~~~~~~i~~l~~s~~~-~~~l~~~s~dg~i~iwd~~~~--------~~~~~~~-~~~~~v~~~~~sp~g~~l~s~s~dg 464 (626)
...|...|.+++|+|++ ..+|++++.|++|++||+... ....... .|...|.+++|++++ +|++++.||
T Consensus 193 ~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg 271 (330)
T 2hes_X 193 LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG 271 (330)
T ss_dssp ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS
T ss_pred ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC
Confidence 23456899999999983 258999999999999997532 1112222 278899999999765 899999999
Q ss_pred cEEEEECCC
Q 006909 465 RVYVWNYDE 473 (626)
Q Consensus 465 ~I~iwd~~~ 473 (626)
.|++|+..+
T Consensus 272 ~v~iw~~~~ 280 (330)
T 2hes_X 272 VLAVYEEVD 280 (330)
T ss_dssp CEEEEEEET
T ss_pred EEEEEEcCC
Confidence 999999764
No 27
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.8e-37 Score=336.28 Aligned_cols=243 Identities=15% Similarity=0.230 Sum_probs=206.7
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
.|.+.|++++|+|+|++||+++ ++.|+||++.++.. ..
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-----------------------------------------~~ 53 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-----------------------------------------KV 53 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-----------------------------------------SS
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-----------------------------------------cc
Confidence 6899999999999999999998 78999999986210 01
Q ss_pred CCceeeccCccc-eEEEEEcC--CC-eEEEEeCCCcEEEeccCCC--------eeeEeec-CCCCeEEEEEeeCCCCEEE
Q 006909 259 SPLQELHGHKGD-VLDLAWSN--SN-YLLSCSMDKTVRMWQVGCN--------QCLNVFD-HHNYVTCVQFNPIDDNYFI 325 (626)
Q Consensus 259 ~~~~~~~~h~~~-V~~l~~s~--~~-~l~s~s~d~~v~iwd~~~~--------~~~~~~~-~~~~v~~~~~~p~~~~~l~ 325 (626)
.....+.+|... |++++|+| ++ +|++++.|++|++||+.++ .....+. |...|.+++|+| ++++|+
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 132 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLC 132 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEE
Confidence 457788899999 99999999 87 8999999999999999754 5555554 889999999999 999999
Q ss_pred EEeCC----CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909 326 SGSID----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 400 (626)
Q Consensus 326 s~s~d----g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 400 (626)
+++.+ +.|++|| .......+..|...|.+++|+|+++ .+++++.|+.|++||+.+.+.... + ..|..
T Consensus 133 ~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~-~------~~~~~ 204 (615)
T 1pgu_A 133 VVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS-D------RTHHK 204 (615)
T ss_dssp EEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE-E------CSSSC
T ss_pred EeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee-e------cccCC
Confidence 99988 7899999 3445566788999999999999998 799999999999999887654322 1 22345
Q ss_pred ---CeEEEEEcCC-CCcEEEEEeCCCcEEEEeCCcceeeeee-c---CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909 401 ---KITGIQFSRD-ESQRIMITSEDSKLRILDGVDVIHKFKG-L---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 401 ---~i~~l~~s~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~ 472 (626)
.|++++|+|+ + .+|++++.|+.|++||+.+....... . .|...|.+++|+ ++++|++++.|+.|++||+.
T Consensus 205 ~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 205 QGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp TTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred CCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence 8999999999 7 79999999999999998765544444 3 688999999999 99999999999999999998
Q ss_pred CC
Q 006909 473 EL 474 (626)
Q Consensus 473 ~~ 474 (626)
++
T Consensus 283 ~~ 284 (615)
T 1pgu_A 283 TS 284 (615)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 28
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.9e-36 Score=305.04 Aligned_cols=304 Identities=16% Similarity=0.247 Sum_probs=240.3
Q ss_pred cccccccccccCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
+.+..+|+||++.|++|+|+|+ +++|||||.||+|+|||+.+....
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--------------------------------- 74 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN--------------------------------- 74 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC---------------------------------
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc---------------------------------
Confidence 3456789999999999999998 689999999999999999863221
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEE
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~ 327 (626)
...+...+.+|...|.+++|+|++ +|++++.|+.|++|+........... +...+..+.+++ ++++|+++
T Consensus 75 -------~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~ 146 (340)
T 4aow_A 75 -------YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSG 146 (340)
T ss_dssp -------SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEE
T ss_pred -------cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEee-cCccceee
Confidence 023456788999999999999998 89999999999999999888777664 677888899998 99999999
Q ss_pred eCCCcEEEEeCCCCeEE--EeccCCCCeEEEEEeeCC--CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909 328 SIDGKVRIWGVCEKRVV--DWADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~--~~~~~~~~i~~i~~sp~g--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~ 403 (626)
+.|+.+++||+...... ....|...+..++|++++ ..+++++.|+.|++||+.+...... ...|...|+
T Consensus 147 s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-------~~~h~~~v~ 219 (340)
T 4aow_A 147 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN-------HIGHTGYLN 219 (340)
T ss_dssp ETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE-------ECCCSSCEE
T ss_pred cCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE-------ecCCCCcEE
Confidence 99999999999876544 355778899999999865 5788999999999999998765332 223457999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC
Q 006909 404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN 483 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 483 (626)
+++|+|++ .+|++++.|+.|++||+.+........ +...+..++|+|++.+++ ++.|+.|++||+++.....
T Consensus 220 ~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~----- 291 (340)
T 4aow_A 220 TVTVSPDG-SLCASGGKDGQAMLWDLNEGKHLYTLD-GGDIINALCFSPNRYWLC-AATGPSIKIWDLEGKIIVD----- 291 (340)
T ss_dssp EEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEE-CSSCEEEEEECSSSSEEE-EEETTEEEEEETTTTEEEE-----
T ss_pred EEEECCCC-CEEEEEeCCCeEEEEEeccCceeeeec-CCceEEeeecCCCCceee-ccCCCEEEEEECCCCeEEE-----
Confidence 99999997 799999999999999988665544443 456899999999886554 5569999999988641100
Q ss_pred CccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCC
Q 006909 484 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP 563 (626)
Q Consensus 484 ~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~ 563 (626)
.+. .... ......+...|++++|+|||++|++++. |+.|+
T Consensus 292 ------~~~--~~~~-------------------------------~~~~~~h~~~v~~l~~s~dg~~l~sgs~-Dg~v~ 331 (340)
T 4aow_A 292 ------ELK--QEVI-------------------------------STSSKAEPPQCTSLAWSADGQTLFAGYT-DNLVR 331 (340)
T ss_dssp ------EEC--CC--------------------------------------CCCCCEEEEEECTTSSEEEEEET-TSCEE
T ss_pred ------ecc--ccce-------------------------------eeeccCCCCCEEEEEECCCCCEEEEEeC-CCEEE
Confidence 000 0000 0002234556888999999999999988 89999
Q ss_pred CCCcccC
Q 006909 564 LWDVTID 570 (626)
Q Consensus 564 vwd~~~~ 570 (626)
+||+.+|
T Consensus 332 iW~~~tG 338 (340)
T 4aow_A 332 VWQVTIG 338 (340)
T ss_dssp EEEEEC-
T ss_pred EEeCCCc
Confidence 9999988
No 29
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.1e-36 Score=300.96 Aligned_cols=245 Identities=18% Similarity=0.340 Sum_probs=217.7
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
...+.+|...|++++|+|++.++++|+.|++|++||+.++
T Consensus 73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~---------------------------------------- 112 (321)
T 3ow8_A 73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG---------------------------------------- 112 (321)
T ss_dssp EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----------------------------------------
T ss_pred eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC----------------------------------------
Confidence 4467899999999999999999999999999999999873
Q ss_pred ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
..+..+..|...+.+++|+|++ +|++++.|+.|++||+.+++....+. +...|.+++|+| ++++|++|+.||
T Consensus 113 -----~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg 186 (321)
T 3ow8_A 113 -----KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDG 186 (321)
T ss_dssp -----EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTS
T ss_pred -----CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCC
Confidence 3456677888899999999998 89999999999999999998887774 778999999999 999999999999
Q ss_pred cEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 332 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 332 ~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
.|++||+++++.+. +..|...|.+++|+|++++|++|+.||.|++||++....... ...|...|.+++|+|+
T Consensus 187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~-------~~~h~~~v~~~~~sp~ 259 (321)
T 3ow8_A 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT-------LSGHASWVLNVAFCPD 259 (321)
T ss_dssp CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE-------ECCCSSCEEEEEECTT
T ss_pred eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE-------EcCCCCceEEEEECCC
Confidence 99999999987664 567889999999999999999999999999999987764321 2234578999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909 411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~ 472 (626)
+ .+|++++.|++|++||+.+.........|...|.+++|+|++++|++++.|++|++||+.
T Consensus 260 ~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 260 D-THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp S-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred C-CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 7 799999999999999998766665556688999999999999999999999999999964
No 30
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=301.79 Aligned_cols=247 Identities=18% Similarity=0.268 Sum_probs=203.1
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
.|...|++++|+|++ .|++|+.||+|+|||+.+++...
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~----------------------------------------- 117 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLI----------------------------------------- 117 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE-----------------------------------------
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee-----------------------------------------
Confidence 477889999999985 78899999999999998743211
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
.....+.+|...|++++|+|++ +|++|+.|++|++||+.+++++..+. |...|++++|+|.+..+|++|+.|++|++|
T Consensus 118 ~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iw 197 (344)
T 4gqb_B 118 VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197 (344)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccc
Confidence 1123456899999999999998 89999999999999999999999885 999999999999444689999999999999
Q ss_pred eCCCCeEEEe---ccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909 337 GVCEKRVVDW---ADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 337 d~~~~~~~~~---~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
|+++++.... ..+...+.+++|+|+ +++|++|+.||.|++||+++.+.... + ..|...|++++|+|++.
T Consensus 198 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~-~------~~h~~~v~~v~fsp~g~ 270 (344)
T 4gqb_B 198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS-S------AVHSQCVTGLVFSPHSV 270 (344)
T ss_dssp ETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE-E------ECCSSCEEEEEECSSSS
T ss_pred cccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE-E------cCCCCCEEEEEEccCCC
Confidence 9998876553 345567999999995 56889999999999999988765432 2 23458999999999986
Q ss_pred cEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC-EEEEEeCCccEEEEECCCCC
Q 006909 413 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 413 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s~dg~I~iwd~~~~~ 475 (626)
.+|++++.|++|+|||..... .+....|...|.+++|+|+++ +|++++.|++|++|++.+..
T Consensus 271 ~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 271 PFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred eEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 789999999999999987543 344566899999999999986 57799999999999998753
No 31
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.9e-35 Score=295.32 Aligned_cols=252 Identities=19% Similarity=0.299 Sum_probs=208.5
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+..
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~---------------------------------------- 42 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET---------------------------------------- 42 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC----------------------------------------
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC----------------------------------------
Confidence 3567999999999999999999999999999999987421
Q ss_pred cccCCCceeeccCccceEEEEEcCC--C-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEeeCC--CCEEEE
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFIS 326 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~--~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p~~--~~~l~s 326 (626)
...+..+.+|.+.|++++|+++ + +|++|+.|++|++||+.+++ .+..+ .|...|.+++|+| + +.+|++
T Consensus 43 ---~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s 118 (297)
T 2pm7_B 43 ---HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPMLLV 118 (297)
T ss_dssp ---BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC-GGGCSEEEE
T ss_pred ---cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCc-CCCCcEEEE
Confidence 2456788999999999999863 4 89999999999999998874 34444 4889999999999 6 789999
Q ss_pred EeCCCcEEEEeCCCCe---EEEeccCCCCeEEEEEeeC-------------CCEEEEEecCCcEEEEEcCCCceeeeEEe
Q 006909 327 GSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIPD-------------GKGFIVGSITGTCHFYKASGNDLKLEKVD 390 (626)
Q Consensus 327 ~s~dg~v~iwd~~~~~---~~~~~~~~~~i~~i~~sp~-------------g~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 390 (626)
|+.|++|++||++.+. ......|...|.+++|+|+ +++|++|+.|++|++||+++........
T Consensus 119 ~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~- 197 (297)
T 2pm7_B 119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE- 197 (297)
T ss_dssp EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE-
T ss_pred EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE-
Confidence 9999999999998753 3456788999999999997 5799999999999999998765322111
Q ss_pred eccccccCCCCeEEEEEcCCC--CcEEEEEeCCCcEEEEeCCcce-----eeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909 391 FHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDVI-----HKFKGLPKSGSQMSASFTTTGKHIISIGDD 463 (626)
Q Consensus 391 ~~~~~~~~~~~i~~l~~s~~~--~~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d 463 (626)
.....|...|.+++|+|++ ..+|++++.|++|+|||..... ..+....+...|.+++|+|+|++|++++.|
T Consensus 198 --~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 198 --STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (297)
T ss_dssp --EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred --EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence 1123456899999999985 4799999999999999976421 222224567899999999999999999999
Q ss_pred ccEEEEECCC
Q 006909 464 CRVYVWNYDE 473 (626)
Q Consensus 464 g~I~iwd~~~ 473 (626)
+.|++|+...
T Consensus 276 ~~v~lw~~~~ 285 (297)
T 2pm7_B 276 NKVTLWKENL 285 (297)
T ss_dssp SCEEEEEECT
T ss_pred CcEEEEEECC
Confidence 9999999763
No 32
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.2e-36 Score=305.62 Aligned_cols=317 Identities=15% Similarity=0.185 Sum_probs=231.3
Q ss_pred CCceeeccCcc-ceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE--ee--cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 259 SPLQELHGHKG-DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VF--DHHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 259 ~~~~~~~~h~~-~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~--~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
..+..+.+|.. .|.+++|+|++ +|++|+.|++|+|||+.++.... .+ .|...|.+++|+| ++++|++|+.|++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCc
Confidence 34678889988 99999999998 89999999999999998876432 22 5889999999999 9999999999999
Q ss_pred EEEEeCCCCe---EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 333 VRIWGVCEKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 333 v~iwd~~~~~---~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
|++||+..+. ...+.+|...|.+++|+|++++|++|+.|++|++||+........... ...|...|.+++|+|
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV----LNSHTQDVKHVVWHP 160 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE----ECCCCSCEEEEEECS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE----ecCcCCCeEEEEECC
Confidence 9999988764 345678999999999999999999999999999999987643221111 223457899999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccc
Q 006909 410 DESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRS 487 (626)
Q Consensus 410 ~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 487 (626)
++ .+|++++.|+.|++||.... ........|...|.+++|+|+|++|++++.|++|+||+......... ..
T Consensus 161 ~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~------~~ 233 (345)
T 3fm0_A 161 SQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG------VA 233 (345)
T ss_dssp SS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC------CC
T ss_pred CC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc------ce
Confidence 97 79999999999999997643 23344456889999999999999999999999999999754211100 00
Q ss_pred eeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCc
Q 006909 488 CEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV 567 (626)
Q Consensus 488 ~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~ 567 (626)
+....+.... +.. ....+...+..++|+|++..+++++. |+.|++|+.
T Consensus 234 ~~~~~~~~~~-----------~~~--------------------~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~vw~~ 281 (345)
T 3fm0_A 234 CSGSDPSWKC-----------ICT--------------------LSGFHSRTIYDIAWCQLTGALATACG-DDAIRVFQE 281 (345)
T ss_dssp CC---CEEEE-----------EEE--------------------ECSSCSSCEEEEEECTTTCCEEEEET-TSCEEEEEE
T ss_pred eeccCCccce-----------eEE--------------------ecCCCCCcEEEEEEecCCCEEEEEeC-CCeEEEEEe
Confidence 0000000000 000 01124456888999999999999988 799999988
Q ss_pred ccCCCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeeecC
Q 006909 568 TIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNYG 621 (626)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~g 621 (626)
..+....... +.........|...+ .++++....+|||||.||+|++|+.-.
T Consensus 282 ~~~~~~~~~~--~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 282 DPNSDPQQPT--FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp CTTSCTTSCC--EEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred CCCCCcceee--EEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 7652110000 000000111233333 345563336999999999999999643
No 33
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-36 Score=316.87 Aligned_cols=345 Identities=15% Similarity=0.206 Sum_probs=256.9
Q ss_pred ccCcEEEEEEcCCCC-EEEEE----------eCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909 180 HKGCIWTLKFSPDGR-YLASG----------GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 248 (626)
Q Consensus 180 H~~~V~~l~fspdg~-~Latg----------s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (626)
+...|++++|+|+|+ +||+| +.||.|+|||+.++..
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~--------------------------------- 57 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS--------------------------------- 57 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG---------------------------------
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC---------------------------------
Confidence 445789999999997 99999 8999999999987321
Q ss_pred cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC----CeeeEee-cCCCCeEEEEEeeCC-C
Q 006909 249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC----NQCLNVF-DHHNYVTCVQFNPID-D 321 (626)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~----~~~~~~~-~~~~~v~~~~~~p~~-~ 321 (626)
..++..+ .|...|++++|+|++ +|++++.|+.|++||+.+ ...+..+ .|...|.+++|+| + +
T Consensus 58 ---------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~ 126 (416)
T 2pm9_A 58 ---------EKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA-KQD 126 (416)
T ss_dssp ---------CSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS-SST
T ss_pred ---------CcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcC-CCC
Confidence 0122233 588999999999988 899999999999999987 3455555 4899999999999 6 8
Q ss_pred CEEEEEeCCCcEEEEeCCCCe------EE-E---eccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEe
Q 006909 322 NYFISGSIDGKVRIWGVCEKR------VV-D---WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVD 390 (626)
Q Consensus 322 ~~l~s~s~dg~v~iwd~~~~~------~~-~---~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 390 (626)
++|++++.|+.|++||+.+++ .. . ...|...|.+++|+|+ +.++++++.||.|++||+.+..... .+.
T Consensus 127 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~ 205 (416)
T 2pm9_A 127 NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI-HLS 205 (416)
T ss_dssp TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE-EEC
T ss_pred CEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce-EEe
Confidence 999999999999999998875 22 1 3568889999999999 7899999999999999998876533 233
Q ss_pred eccccccCCCCeEEEEEcCCCCcEEEEEeCCC---cEEEEeCCcce-eeeeec-CCCCCeEEEEEcC-CCCEEEEEeCCc
Q 006909 391 FHDRKKTSGNKITGIQFSRDESQRIMITSEDS---KLRILDGVDVI-HKFKGL-PKSGSQMSASFTT-TGKHIISIGDDC 464 (626)
Q Consensus 391 ~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg---~i~iwd~~~~~-~~~~~~-~~~~~v~~~~~sp-~g~~l~s~s~dg 464 (626)
.+.....+...|++++|+|++..++++++.|+ .|++||+.... ...... .|...|.+++|+| ++++|++++.|+
T Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg 285 (416)
T 2pm9_A 206 YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN 285 (416)
T ss_dssp CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS
T ss_pred ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC
Confidence 33222333588999999999867999999999 99999987542 222222 4888999999999 999999999999
Q ss_pred cEEEEECCCCCCCCC-CccCCccceeeeccCC-cEEEEecCCCCcccccccCCCccccC------------ccccccC--
Q 006909 465 RVYVWNYDELCFPSS-KQKNSVRSCEHFFSEG-VSVAVQWPGIGTEQKSLCSSSLRDCS------------QKWDNLE-- 528 (626)
Q Consensus 465 ~I~iwd~~~~~~~~~-~~~~~~~~~~~~~~~g-~~~av~~s~~~~~l~~~~~~~~~~~~------------~~w~~~~-- 528 (626)
.|++||+.++..... ........++.|+|++ ..++++.......+|.+......... .+|....
T Consensus 286 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (416)
T 2pm9_A 286 TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSRE 365 (416)
T ss_dssp EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---------------------
T ss_pred CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccc
Confidence 999999988632211 1122344566777877 56666555445566665443221110 0000000
Q ss_pred ---------CCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909 529 ---------TAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 529 ---------~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~ 570 (626)
..+....+...+.+++|+|||+++++++. |+.|++|++.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-d~~v~~w~~~~~ 415 (416)
T 2pm9_A 366 ESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD-GKGVSITNPKIS 415 (416)
T ss_dssp -CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT-SSCBCCBCCCCC
T ss_pred ccccccccccccCCccccCCccceEEeeCCeEEEEeCC-CCeEEEEEeccC
Confidence 00111124566789999999999999997 799999998864
No 34
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.5e-35 Score=300.50 Aligned_cols=250 Identities=22% Similarity=0.411 Sum_probs=216.2
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
....+..|...|.+++|+|+|++||+|+.|+.|++|++.+....
T Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~------------------------------------ 132 (340)
T 1got_B 89 KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN------------------------------------ 132 (340)
T ss_dssp EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS------------------------------------
T ss_pred cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc------------------------------------
Confidence 44567789999999999999999999999999999999763210
Q ss_pred cccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
......+.+|...|.++.|++++.+++++.|++|++||+.+++++..+. |...|.+++|+| ++++|++|+.|+
T Consensus 133 -----~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~ 206 (340)
T 1got_B 133 -----VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDA 206 (340)
T ss_dssp -----CEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred -----ceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEeCCC
Confidence 1234567899999999999999999999999999999999999988885 889999999999 999999999999
Q ss_pred cEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 332 KVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 332 ~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
+|++||++++... .+..|...|.+++|+|++++|++|+.||+|++||++....... .. ...+...|++++|+|+
T Consensus 207 ~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~----~~~~~~~v~~~~~s~~ 281 (340)
T 1got_B 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YS----HDNIICGITSVSFSKS 281 (340)
T ss_dssp CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-EC----CTTCCSCEEEEEECTT
T ss_pred cEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE-Ec----cCCcccceEEEEECCC
Confidence 9999999987765 4667899999999999999999999999999999987654322 11 1122357999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909 411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd 470 (626)
| .+|++++.|+.|++||..+.........|...|.+++|+|+|++|++|+.|++|+|||
T Consensus 282 g-~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 282 G-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp S-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred C-CEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 8 7999999999999999876554444455899999999999999999999999999997
No 35
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-35 Score=297.78 Aligned_cols=288 Identities=14% Similarity=0.183 Sum_probs=226.2
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
...+++.+|...|++++|+|++ +|++++.||+|++||+.++..+..+. |..+|.+++|+| ++++|++|+.|++|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEE
Confidence 3467889999999999999998 89999999999999999999988885 788999999999 99999999999999999
Q ss_pred eCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 337 GVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 337 d~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
|+.+++.+ .+..|...|.+++|+|++++|++|+.||+|++||+.+.......+ ..|...|++++|+|++..+|
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~------~~h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF------EGHEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE------CCCCSCEEEEEECTTCTTEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh------cccCCcEEEEEECCCCCCEE
Confidence 99987755 567899999999999999999999999999999998764433222 23458899999999655799
Q ss_pred EEEeCCCcEEEEeCCcceeeeee-cCCCCCeEEEEEcC--CCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeec
Q 006909 416 MITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTT--TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 492 (626)
Q Consensus 416 ~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp--~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 492 (626)
++++.|++|++||+......+.. ..+...+..+.|+| ++++|++++.|++|++||+.++.
T Consensus 157 ~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~----------------- 219 (304)
T 2ynn_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS----------------- 219 (304)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE-----------------
T ss_pred EEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc-----------------
Confidence 99999999999998754433332 23557888999976 78899999999999999997641
Q ss_pred cCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCC
Q 006909 493 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSD 572 (626)
Q Consensus 493 ~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~ 572 (626)
.+.. +.+|...+..++|+|++.++++++. |+.|++||+.++
T Consensus 220 ----~~~~--------------------------------~~~h~~~v~~~~~~p~~~~l~s~s~-Dg~i~iWd~~~~-- 260 (304)
T 2ynn_A 220 ----CVAT--------------------------------LEGHMSNVSFAVFHPTLPIIISGSE-DGTLKIWNSSTY-- 260 (304)
T ss_dssp ----EEEE--------------------------------EECCSSCEEEEEECSSSSEEEEEET-TSCEEEEETTTC--
T ss_pred ----ccee--------------------------------eCCCCCCEEEEEECCCCCEEEEEcC-CCeEEEEECCCC--
Confidence 1000 1123344667788999999999988 899999999887
Q ss_pred CCCCChhhHHHHhhhccCCccc--cccccccce-EEEEecCCceEeeeee
Q 006909 573 GYCQDPQQQRLQQQCLNNVDDV--RAISATWGL-VIVTAGCDGMIKTFHN 619 (626)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~-~ivt~g~Dg~Irvw~~ 619 (626)
++......+.... .++.+.++. +||+|+.|| +.+|..
T Consensus 261 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 261 ---------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL 300 (304)
T ss_dssp ---------CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred ---------ceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence 2222222333332 344453433 588888777 555543
No 36
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-35 Score=300.61 Aligned_cols=304 Identities=19% Similarity=0.233 Sum_probs=236.1
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
....|.+|++.|++++|+|+|++||+|+.||.|+|||+.+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---------------------------------------- 63 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN---------------------------------------- 63 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT----------------------------------------
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----------------------------------------
Confidence 3456789999999999999999999999999999999987
Q ss_pred cccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC-
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID- 330 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d- 330 (626)
...+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+.+...|.+++|+| ++.++++++.+
T Consensus 64 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~ 137 (369)
T 3zwl_B 64 -----GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILDNV 137 (369)
T ss_dssp -----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSSEEEEEECCB
T ss_pred -----chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEcc-CCCEEEEecCCc
Confidence 34567788999999999999987 89999999999999999999999999999999999999 99999999998
Q ss_pred ----CcEEEEeCCCCe------------EEEeccCCC--CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeec
Q 006909 331 ----GKVRIWGVCEKR------------VVDWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH 392 (626)
Q Consensus 331 ----g~v~iwd~~~~~------------~~~~~~~~~--~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~ 392 (626)
+.|++||+.... ......+.. .+.+++|+|++++|++++.||.|++||+.+.......+..
T Consensus 138 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~- 216 (369)
T 3zwl_B 138 MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL- 216 (369)
T ss_dssp TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC-
T ss_pred cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec-
Confidence 999999987542 222334444 8999999999999999999999999999884443333332
Q ss_pred cccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909 393 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 393 ~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~ 472 (626)
+...|.+++|+|++ .+|++++.|+.|++||+.+........ +...+..++|+|+++++++++.++.+.+|...
T Consensus 217 -----~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 289 (369)
T 3zwl_B 217 -----HEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTS 289 (369)
T ss_dssp -----CSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC--------
T ss_pred -----CCCceeEEEECCCC-CEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEe
Confidence 34789999999997 799999999999999987654433333 67889999999999999999999854444433
Q ss_pred CCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcc
Q 006909 473 ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCR 552 (626)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l 552 (626)
... +......|.. .... ....+..+...+.+++|+|||+++
T Consensus 290 ~~~-------------------~~~~i~~~d~--------~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l 330 (369)
T 3zwl_B 290 ANE-------------------GKFEARFYHK--------IFEE------------EIGRVQGHFGPLNTVAISPQGTSY 330 (369)
T ss_dssp ------------------------CEEEEEET--------TTCC------------EEEEEECCSSCEEEEEECTTSSEE
T ss_pred cCC-------------------CcceeEEEec--------CCCc------------chhheecccCcEEEEEECCCCCEE
Confidence 210 0000000000 0000 000122344567888899999999
Q ss_pred cccCCCCCCCCCCCcccC
Q 006909 553 GSATWPAEKLPLWDVTID 570 (626)
Q Consensus 553 ~s~~~~d~~i~vwd~~~~ 570 (626)
++++. |+.|++|++..+
T Consensus 331 ~s~~~-dg~v~iw~~~~~ 347 (369)
T 3zwl_B 331 ASGGE-DGFIRLHHFEKS 347 (369)
T ss_dssp EEEET-TSEEEEEEECHH
T ss_pred EEEcC-CCeEEEEECccc
Confidence 99888 799999999876
No 37
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.4e-35 Score=301.17 Aligned_cols=288 Identities=16% Similarity=0.208 Sum_probs=230.8
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
.....+.+|...|++++|+|++ +|++|+.|++|++||..++.....+. |...|.+++|+| ++.++++|+.|+.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEE
Confidence 4567889999999999999998 99999999999999999888877775 778999999999 99999999999999999
Q ss_pred eCCCC-------eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 337 GVCEK-------RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 337 d~~~~-------~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
++... ....+..|...|.+++|+|++..|++++.|++|++||+.+++.... + ..|...|.+++|+|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~-~------~~h~~~v~~~~~~~ 206 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS-F------HGHGADVLCLDLAP 206 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE-E------ECCSSCEEEEEECC
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE-E------cCCCCCeEEEEEEe
Confidence 98643 2344567899999999999999999999999999999988765322 2 23457899999988
Q ss_pred CC-CcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccce
Q 006909 410 DE-SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC 488 (626)
Q Consensus 410 ~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 488 (626)
+. +.+|++++.|++|++||+++.........|...|.+++|+|++++|++++.|++|++||+....
T Consensus 207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~------------- 273 (354)
T 2pbi_B 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR------------- 273 (354)
T ss_dssp CSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------------
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-------------
Confidence 52 2699999999999999988665555555688999999999999999999999999999987631
Q ss_pred eeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcc
Q 006909 489 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT 568 (626)
Q Consensus 489 ~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~ 568 (626)
.+.+ +... .....+..++|+|+|+++++++. |+.|++||+.
T Consensus 274 --------~~~~-~~~~-----------------------------~~~~~~~~~~~s~~g~~l~~g~~-d~~i~vwd~~ 314 (354)
T 2pbi_B 274 --------EVAI-YSKE-----------------------------SIIFGASSVDFSLSGRLLFAGYN-DYTINVWDVL 314 (354)
T ss_dssp --------EEEE-ECCT-----------------------------TCCSCEEEEEECTTSSEEEEEET-TSCEEEEETT
T ss_pred --------EEEE-EcCC-----------------------------CcccceeEEEEeCCCCEEEEEEC-CCcEEEEECC
Confidence 0000 0000 00112456789999999999887 7999999998
Q ss_pred cCCCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeee
Q 006909 569 IDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFH 618 (626)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~ 618 (626)
++. .......|...+ .++++ ||.+||||+.||+|++|+
T Consensus 315 ~~~-----------~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 315 KGS-----------RVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TCS-----------EEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred CCc-----------eEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEecC
Confidence 772 122223344433 34556 899999999999999995
No 38
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.9e-35 Score=327.03 Aligned_cols=312 Identities=16% Similarity=0.236 Sum_probs=240.0
Q ss_pred cccccccccccCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
+.....|++|++.|++++|+|++ ++|+||+.||+|+||++.+....
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~--------------------------------- 418 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA--------------------------------- 418 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC---------------------------------
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc---------------------------------
Confidence 34455789999999999999875 69999999999999999763210
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEE
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~ 327 (626)
.......+.+|...|.+++|+|++ +|++|+.|++|+|||+.++.++..+ .|...|.+++|+| ++++|++|
T Consensus 419 -------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~ 490 (694)
T 3dm0_A 419 -------YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSA 490 (694)
T ss_dssp -------SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEE
T ss_pred -------cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEE
Confidence 012346788999999999999988 8999999999999999999988877 5999999999999 99999999
Q ss_pred eCCCcEEEEeCCCCeEEEe----ccCCCCeEEEEEeeCC--CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 328 SIDGKVRIWGVCEKRVVDW----ADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~~----~~~~~~i~~i~~sp~g--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
+.|++|++||+........ ..|...|.+++|+|++ ..+++++.|++|++||+++...... ...|...
T Consensus 491 s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~-------~~~h~~~ 563 (694)
T 3dm0_A 491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST-------LAGHTGY 563 (694)
T ss_dssp ETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE-------ECCCSSC
T ss_pred eCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE-------EcCCCCC
Confidence 9999999999877655443 3678889999999987 5899999999999999987764322 2234589
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCc
Q 006909 402 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 481 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 481 (626)
|++++|+|++ .+|++++.|+.|++||+.+........ +...+.+++|+|++.+|++++ |+.|+|||+.++.....
T Consensus 564 v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~-- 638 (694)
T 3dm0_A 564 VSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVED-- 638 (694)
T ss_dssp EEEEEECTTS-SEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEE--
T ss_pred EEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhh--
Confidence 9999999997 799999999999999998766554443 456899999999999888876 55699999987521110
Q ss_pred cCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCC
Q 006909 482 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEK 561 (626)
Q Consensus 482 ~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~ 561 (626)
+..+.......... ........+...+++++|||||++|++++. |+.
T Consensus 639 ---------~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~spdg~~l~sgs~-Dg~ 685 (694)
T 3dm0_A 639 ---------LKVDLKAEAEKADN-----------------------SGPAATKRKVIYCTSLNWSADGSTLFSGYT-DGV 685 (694)
T ss_dssp ---------ECCCCC---------------------------------------CCCCEEEEEECTTSSEEEEEET-TSE
T ss_pred ---------hccccccccccccc-----------------------cccccCCceeEEeeeEEEcCCCCEEEEEcC-CCe
Confidence 00000000000000 000001112224678899999999999998 899
Q ss_pred CCCCCcc
Q 006909 562 LPLWDVT 568 (626)
Q Consensus 562 i~vwd~~ 568 (626)
|++|++.
T Consensus 686 i~iW~i~ 692 (694)
T 3dm0_A 686 IRVWGIG 692 (694)
T ss_dssp EEEEEC-
T ss_pred EEEEecc
Confidence 9999975
No 39
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.8e-35 Score=310.77 Aligned_cols=296 Identities=13% Similarity=0.143 Sum_probs=220.8
Q ss_pred ccccccccccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 172 YTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
.+.+...+|...|+||+|+| ++++||+|+.||+|+|||+.++..
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~----------------------------------- 154 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK----------------------------------- 154 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-----------------------------------
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-----------------------------------
Confidence 34456678999999999999 567999999999999999976321
Q ss_pred CccccccCCCceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEE
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFI 325 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~ 325 (626)
.....+.+|.+.|++|+|+| ++ +|++|+.|++|++||++++....... +...+.+++|+| ++.+|+
T Consensus 155 --------~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 225 (435)
T 4e54_B 155 --------PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVV 225 (435)
T ss_dssp --------CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEE
T ss_pred --------eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC-CCCEEE
Confidence 22345668999999999998 44 99999999999999998765544443 344688999999 999999
Q ss_pred EEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909 326 SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 404 (626)
Q Consensus 326 s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~ 404 (626)
+|+.||.|++||+++..+..+..|...|.+++|+|++. ++++|+.|+.|++||++.......... ...|...|++
T Consensus 226 ~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~----~~~h~~~v~~ 301 (435)
T 4e54_B 226 TGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY----SLPHRHPVNA 301 (435)
T ss_dssp EECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB----CCBCSSCEEE
T ss_pred EEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE----eeeccccccc
Confidence 99999999999999888778889999999999999886 677899999999999987654332111 2345689999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCC------CCeEEEEEcCCCCEEEEEeC------------CccE
Q 006909 405 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS------GSQMSASFTTTGKHIISIGD------------DCRV 466 (626)
Q Consensus 405 l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~sp~g~~l~s~s~------------dg~I 466 (626)
++|+|+| .+|++++.|+.|+|||+.+.........|. ..+..+.|+|++.++++++. ++.|
T Consensus 302 ~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i 380 (435)
T 4e54_B 302 ACFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTI 380 (435)
T ss_dssp CCBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCE
T ss_pred eeECCCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEE
Confidence 9999998 799999999999999987543332222121 12344567777766666542 2356
Q ss_pred EEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCc-cc
Q 006909 467 YVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGS-WF 545 (626)
Q Consensus 467 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~ 545 (626)
++||..++ ..+... ..++...+.++ +|
T Consensus 381 ~iwd~~~g---------------------~~~~~l-------------------------------~~~~~~~v~s~~~f 408 (435)
T 4e54_B 381 DVFDGNSG---------------------KMMCQL-------------------------------YDPESSGISSLNEF 408 (435)
T ss_dssp EEECSSSC---------------------CEEEEE-------------------------------CCSSCCCCCCEEEE
T ss_pred EEEECCCC---------------------cEEEEE-------------------------------eCCCCCcEEEEEEE
Confidence 66665442 111111 11222334555 68
Q ss_pred cCCCCcccccCCCCCCCCCCCcccC
Q 006909 546 SNDGPCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 546 s~dg~~l~s~~~~d~~i~vwd~~~~ 570 (626)
+|||++|++++ ++.|++|++.++
T Consensus 409 spdg~~lasg~--d~~i~iW~~~~g 431 (435)
T 4e54_B 409 NPMGDTLASAM--GYHILIWSQQEA 431 (435)
T ss_dssp CTTSSCEEEEC--SSEEEECCCC--
T ss_pred CCCCCEEEEEc--CCcEEEEECCcC
Confidence 99999998876 578999999887
No 40
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.2e-34 Score=306.61 Aligned_cols=322 Identities=17% Similarity=0.311 Sum_probs=252.1
Q ss_pred ccccccccccCcE-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 172 YTSQEIQAHKGCI-WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 172 ~~~~~l~~H~~~V-~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
.....+.+|.+.| .++.| ++++|++|+.||+|++||+.+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~-------------------------------------- 151 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN-------------------------------------- 151 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT--------------------------------------
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC--------------------------------------
Confidence 4556889999885 66666 567999999999999999987
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEee-CCCCEEEEEe
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP-IDDNYFISGS 328 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p-~~~~~l~s~s 328 (626)
.+.+..+.+|.+.|.+++|+|++.|++|+.||+|++||+.+++++..+. |...|.+++|++ .++.++++|+
T Consensus 152 -------~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s 224 (464)
T 3v7d_B 152 -------KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224 (464)
T ss_dssp -------TEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEE
T ss_pred -------CcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEc
Confidence 3456778899999999999999999999999999999999999998886 899999999995 2678999999
Q ss_pred CCCcEEEEeCCCCe------------------------EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCce
Q 006909 329 IDGKVRIWGVCEKR------------------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 384 (626)
Q Consensus 329 ~dg~v~iwd~~~~~------------------------~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~ 384 (626)
.||+|++||+.++. .....+|...+.++ +++++++++|+.||.|++||+.+...
T Consensus 225 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~ 302 (464)
T 3v7d_B 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC 302 (464)
T ss_dssp TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE
T ss_pred CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 99999999998765 22355677777766 68899999999999999999987765
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909 385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 464 (626)
Q Consensus 385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg 464 (626)
... + ..|...|++++|+|++ .++++++.|+.|++||+.+.........|...|.+++|+ +++|++++.||
T Consensus 303 ~~~-~------~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg 372 (464)
T 3v7d_B 303 LYI-L------SGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADG 372 (464)
T ss_dssp EEE-E------CCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred EEE-e------cCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCC
Confidence 322 1 2345889999999997 799999999999999988766666666689999999997 68999999999
Q ss_pred cEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCcc
Q 006909 465 RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSW 544 (626)
Q Consensus 465 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 544 (626)
.|++||+.+... ..... +...+..++
T Consensus 373 ~v~vwd~~~~~~--------------------~~~~~----------------------------------~~~~~~~~~ 398 (464)
T 3v7d_B 373 SIRGWDANDYSR--------------------KFSYH----------------------------------HTNLSAITT 398 (464)
T ss_dssp EEEEEETTTCCE--------------------EEEEE----------------------------------CTTCCCEEE
T ss_pred cEEEEECCCCce--------------------eeeec----------------------------------CCCCccEEE
Confidence 999999986310 00000 011234456
Q ss_pred ccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccccceEEEEecCCceEeeee
Q 006909 545 FSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFH 618 (626)
Q Consensus 545 ~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~ 618 (626)
|+|+++++++++ ++.|++||+.++. ........+...+..++...+.++++++.||.+.+|-
T Consensus 399 ~~~~~~~l~~~~--dg~i~iwd~~~g~----------~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 399 FYVSDNILVSGS--ENQFNIYNLRSGK----------LVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEECSSEEEEEE--TTEEEEEETTTCC----------EEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred EEeCCCEEEEec--CCeEEEEECCCCc----------EEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEE
Confidence 888888888877 6899999999882 1111233444445555554456666777888766654
No 41
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.1e-35 Score=332.12 Aligned_cols=372 Identities=18% Similarity=0.183 Sum_probs=281.7
Q ss_pred ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
...+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+
T Consensus 46 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~--------------------------------------- 86 (814)
T 3mkq_A 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--------------------------------------- 86 (814)
T ss_dssp EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT---------------------------------------
T ss_pred ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC---------------------------------------
Confidence 34567789999999999999999999999999999999987
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC-eeeEee-cCCCCeEEEEEeeCCCCEEEEEe
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~-~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s 328 (626)
...+..+.+|...|++++|+|++ +|++++.|++|++||+.++ .....+ .|...|.+++|+|.+++.|++++
T Consensus 87 ------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 87 ------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ------CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 34467788899999999999998 8999999999999999887 555555 48899999999986678999999
Q ss_pred CCCcEEEEeCCCCeEEE-e-ccCCCCeEEEEEee--CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909 329 IDGKVRIWGVCEKRVVD-W-ADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 404 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~-~-~~~~~~i~~i~~sp--~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~ 404 (626)
.||+|++||+.++.... . ..+...+.+++|+| ++.++++++.||.|++||+.+..... .+. .|...|++
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~------~~~~~v~~ 233 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA-TLE------GHMSNVSF 233 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE-EEE------CCSSCEEE
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE-EEc------CCCCCEEE
Confidence 99999999998765433 3 33448899999999 99999999999999999998776432 222 23478999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC--EEEEEeCCccEEEEECCCCCCCCC---
Q 006909 405 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK--HIISIGDDCRVYVWNYDELCFPSS--- 479 (626)
Q Consensus 405 l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~s~s~dg~I~iwd~~~~~~~~~--- 479 (626)
++|+|++ .++++++.||.|++||..+.........+...+.+++|+|++. ++++++ ++.+.+|++........
T Consensus 234 ~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 311 (814)
T 3mkq_A 234 AVFHPTL-PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDP 311 (814)
T ss_dssp EEECSSS-SEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECS
T ss_pred EEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECC
Confidence 9999998 6999999999999999886555555555788999999999997 455555 66788888765311000
Q ss_pred -----------------------------------------CccCCccceeeeccCCcEEEE------------------
Q 006909 480 -----------------------------------------KQKNSVRSCEHFFSEGVSVAV------------------ 500 (626)
Q Consensus 480 -----------------------------------------~~~~~~~~~~~~~~~g~~~av------------------ 500 (626)
........++.|+|+|..+++
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~ 391 (814)
T 3mkq_A 312 VGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA 391 (814)
T ss_dssp SSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE
T ss_pred CCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC
Confidence 001112356678888876654
Q ss_pred -------ecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCC---CcccccCCCCCCCCCCCcccC
Q 006909 501 -------QWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDG---PCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 501 -------~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~s~~~~d~~i~vwd~~~~ 570 (626)
+|+|++..++....+ +.+.+|.. ...+...+..++|+||| .++++++. ++.|++||+.++
T Consensus 392 ~~~i~~~~~spdg~~la~~~~~---g~v~l~~~------~~~~~~~v~~~~~s~dg~~~~~l~~~~~-d~~v~~~d~~~~ 461 (814)
T 3mkq_A 392 FGKCQDFVWGPDSNSYALIDET---GQIKYYKN------FKEVTSWSVPMHSAIDRLFSGALLGVKS-DGFVYFFDWDNG 461 (814)
T ss_dssp EEECSEEEECTTSSCEEEECTT---CCEEEEET------TEECTTCCCCCSSCCCEEECSSSEEEEE-TTEEEEECTTTC
T ss_pred CCceEEEEEeCCCCeEEEEeCC---CcEEEEEC------CCCccceEEcCCcCccceecceEEEEec-CCEEEEEECCcC
Confidence 355555555443332 23455543 33455568889999998 57777776 789999999887
Q ss_pred CCCCCCChhhHHHHhhhccCCccccccccccceEEEEe------cCCceEeeeeec
Q 006909 571 SDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTA------GCDGMIKTFHNY 620 (626)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~------g~Dg~Irvw~~~ 620 (626)
. .......+.. ...+++ ||++|+++ +.|+.+.+|.+-
T Consensus 462 ~-----------~~~~~~~~~~-~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~~~ 504 (814)
T 3mkq_A 462 T-----------LVRRIDVNAK-DVIWSD-NGELVMIVNTNSNGDEASGYTLLFNK 504 (814)
T ss_dssp C-----------EEEEESSCEE-EEEECT-TSSEEEEEECCCSSCSCSEEEEEECH
T ss_pred c-----------EEEEEecCCC-EEEEcC-CCCEEEEEEcCcccCCceEEEEEech
Confidence 2 1222222222 456666 89999999 777777777643
No 42
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.8e-34 Score=288.22 Aligned_cols=245 Identities=18% Similarity=0.335 Sum_probs=205.0
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
.+.+++|...|++++|+|+|++|++|+.|++|+|||+.+
T Consensus 58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~----------------------------------------- 96 (319)
T 3frx_A 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT----------------------------------------- 96 (319)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------------------------------------
T ss_pred ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC-----------------------------------------
Confidence 456889999999999999999999999999999999987
Q ss_pred ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeC-----CCCEEEEE
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI-----DDNYFISG 327 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~l~s~ 327 (626)
...+..+.+|...|.+++|+|++ +|++|+.|++|++||+..........|...|.+++|.|. ++..++++
T Consensus 97 ----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 97 ----GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp ----TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred ----CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 34467788999999999999987 899999999999999985544444469999999999982 23489999
Q ss_pred eCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 328 SIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
+.|++|++||+++.+.. .+.+|...|.+++|+|+|++|++|+.||.|++||+.+.+.... +. . ...|.+++
T Consensus 173 ~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~-~~--~-----~~~v~~~~ 244 (319)
T 3frx_A 173 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT-LS--A-----QDEVFSLA 244 (319)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE-EE--C-----CSCEEEEE
T ss_pred eCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-ec--C-----CCcEEEEE
Confidence 99999999999987755 4678999999999999999999999999999999988765332 22 1 26799999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCcceeeeee--------cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 407 FSRDESQRIMITSEDSKLRILDGVDVIHKFKG--------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
|+|++ .++++++. +.+++|++......... ..+...+.+++|+|+|++|++|+.|+.|+|||+.+
T Consensus 245 ~sp~~-~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 245 FSPNR-YWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp ECSSS-SEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred EcCCC-CEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 99997 67776664 56999997643322211 12356789999999999999999999999999875
No 43
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.4e-34 Score=292.53 Aligned_cols=246 Identities=18% Similarity=0.373 Sum_probs=203.8
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
.+.+.+|.+.|++++|+|++.+|++|+.|++|++||+.+
T Consensus 69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~----------------------------------------- 107 (343)
T 2xzm_R 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT----------------------------------------- 107 (343)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS-----------------------------------------
T ss_pred cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC-----------------------------------------
Confidence 456789999999999999999999999999999999987
Q ss_pred ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCC--------
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDD-------- 321 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~-------- 321 (626)
...+..+.+|...|.+++|+|++ +|++++.|++|++||+......... .|...|.+++|+| ++
T Consensus 108 ----~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~ 182 (343)
T 2xzm_R 108 ----GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQP 182 (343)
T ss_dssp ----SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCS
T ss_pred ----CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCC
Confidence 34467788999999999999988 8999999999999999854443333 4888999999999 65
Q ss_pred --CEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCC
Q 006909 322 --NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 399 (626)
Q Consensus 322 --~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 399 (626)
.+|++++.|++|++||........+..|...|.+++|+|+|++|++|+.||.|++||+........... +.
T Consensus 183 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-------~~ 255 (343)
T 2xzm_R 183 FAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-------AG 255 (343)
T ss_dssp SCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-------CS
T ss_pred CCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-------CC
Confidence 799999999999999976655666788999999999999999999999999999999954443322221 12
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce--e--eeee---------cCCCCCeEEEEEcCCCCEEEEEeCCccE
Q 006909 400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--H--KFKG---------LPKSGSQMSASFTTTGKHIISIGDDCRV 466 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~--~--~~~~---------~~~~~~v~~~~~sp~g~~l~s~s~dg~I 466 (626)
..|.+++|+|++ .+++ ++.|+.|++||+.+.. . .+.. ..|...+.+++|+|+|++|++|+.||.|
T Consensus 256 ~~v~~v~~sp~~-~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v 333 (343)
T 2xzm_R 256 STINQIAFNPKL-QWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVI 333 (343)
T ss_dssp SCEEEEEECSSS-CEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEE
T ss_pred CcEEEEEECCCC-CEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceE
Confidence 579999999997 4554 5568889999976422 1 2221 1467789999999999999999999999
Q ss_pred EEEECCCC
Q 006909 467 YVWNYDEL 474 (626)
Q Consensus 467 ~iwd~~~~ 474 (626)
++|+++++
T Consensus 334 ~~w~~~~g 341 (343)
T 2xzm_R 334 RTFSFETS 341 (343)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEcc
Confidence 99998753
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.4e-35 Score=297.23 Aligned_cols=317 Identities=14% Similarity=0.154 Sum_probs=244.7
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
|.+.|.+++|+|||++++++..++.+.+|.... ..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~---------------------------------------------~~ 42 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR---------------------------------------------HA 42 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCS---------------------------------------------EE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCC---------------------------------------------cc
Confidence 677899999999999999888777665553332 11
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE---ee---cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN---VF---DHHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~---~~---~~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
......+|...|++++|+|++ +|++++ |+.|++||+.++.... .+ .|...|.+++|+| ++++|++++.|+.
T Consensus 43 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 120 (337)
T 1gxr_A 43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSE
T ss_pred ccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCc
Confidence 123334799999999999998 777777 9999999998765332 22 5888999999999 9999999999999
Q ss_pred EEEEeCCCCe---EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 333 VRIWGVCEKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 333 v~iwd~~~~~---~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
|++||+.+++ ......+...|.+++|+|+++++++++.||.|++||+.+.+.... + ..|...|.+++|+|
T Consensus 121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~------~~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ-F------QGHTDGASCIDISN 193 (337)
T ss_dssp EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-E------CCCSSCEEEEEECT
T ss_pred EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee-e------ecccCceEEEEECC
Confidence 9999998876 334667888999999999999999999999999999987754322 2 22457899999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCcccee
Q 006909 410 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE 489 (626)
Q Consensus 410 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 489 (626)
++ .++++++.|+.|++||+.+....... .+...+.+++|+|++++|++++.|+.|++||+.+......
T Consensus 194 ~~-~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~---------- 261 (337)
T 1gxr_A 194 DG-TKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL---------- 261 (337)
T ss_dssp TS-SEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE----------
T ss_pred CC-CEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE----------
Confidence 97 79999999999999998865544333 3678899999999999999999999999999987632111
Q ss_pred eeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCC-cccCCCcccCCccccCCCCcccccCCCCCCCCCCCc
Q 006909 490 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP-WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV 567 (626)
Q Consensus 490 ~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~ 567 (626)
..+.+.+..++|+|++..++....+ +.+.+|+...... ....+...+.+++|+||++++++++. ++.|++|++
T Consensus 262 -~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~ 335 (337)
T 1gxr_A 262 -HLHESCVLSLKFAYCGKWFVSTGKD---NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG-DKKATVYEV 335 (337)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-TSCEEEEEE
T ss_pred -cCCccceeEEEECCCCCEEEEecCC---CcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecC-CCeEEEEEE
Confidence 1123445566666666655544433 3355555533322 22345667899999999999999888 799999986
No 45
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.5e-34 Score=293.87 Aligned_cols=248 Identities=17% Similarity=0.299 Sum_probs=201.2
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256 (626)
Q Consensus 177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (626)
..+|...|++++|+|+++ +++++.||+|+|||+.+++..
T Consensus 90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~---------------------------------------- 128 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESL---------------------------------------- 128 (357)
T ss_dssp EEECSSCEEEEEEETTTE-EEEEETTSCEEEC------------------------------------------------
T ss_pred cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeecccccee----------------------------------------
Confidence 457999999999999986 556788999999999874321
Q ss_pred cCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909 257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVR 334 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~ 334 (626)
........+|...|++++|+|++ +|++|+.|++|++||+.+++++..+. |...|++++|+|....++++++.|++|+
T Consensus 129 -~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~ 207 (357)
T 4g56_B 129 -LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL 207 (357)
T ss_dssp -CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEE
T ss_pred -EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceE
Confidence 11123455899999999999998 89999999999999999999998885 8999999999993346899999999999
Q ss_pred EEeCCCCeEEE---eccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 335 IWGVCEKRVVD---WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 335 iwd~~~~~~~~---~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
+||+++++... ...+...+.+++|+|+ +.+|++|+.|+.|++||+++.+.... + ..+...|++++|+|+
T Consensus 208 ~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~------~~~~~~v~~l~~sp~ 280 (357)
T 4g56_B 208 LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-S------AVHSQNITGLAYSYH 280 (357)
T ss_dssp ECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-E------CCCSSCEEEEEECSS
T ss_pred EEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-E------eccceeEEEEEEcCC
Confidence 99999877554 3456678999999997 56888999999999999988765332 2 234578999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCCC
Q 006909 411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+..+|++++.|++|+|||+..... +....|...|++++|+| ++++|++++.||+|++|++...
T Consensus 281 ~~~~lasgs~D~~i~iwd~~~~~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 281 SSPFLASISEDCTVAVLDADFSEV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSCCEEEEETTSCEEEECTTSCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCEEEEEeCCCEEEEEECCCCcE-eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 877899999999999999876533 33456899999999998 7999999999999999999764
No 46
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=316.79 Aligned_cols=289 Identities=11% Similarity=0.043 Sum_probs=203.5
Q ss_pred eeeccCccceEEEEEcCC-------CeEEEEeCCCcEEEeccCCCeee-----------Eee-cCCCCeEEEEEeeCCCC
Q 006909 262 QELHGHKGDVLDLAWSNS-------NYLLSCSMDKTVRMWQVGCNQCL-----------NVF-DHHNYVTCVQFNPIDDN 322 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~-------~~l~s~s~d~~v~iwd~~~~~~~-----------~~~-~~~~~v~~~~~~p~~~~ 322 (626)
..+.+|.+.|.+++|+|+ ++|++++.||+|++||+.++... ..+ .|...|++++|+| + .
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~ 278 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-T 278 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-S
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-C
Confidence 345678899999999986 38999999999999999766421 233 4888999999997 4 5
Q ss_pred EEEEEeCCCcEEEEeCCCCe--EEEeccCCCCeEEE--EEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeecccccc
Q 006909 323 YFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAI--CYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 397 (626)
Q Consensus 323 ~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~i~~i--~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 397 (626)
.|++|+.||+|++||++++. ...+..|...|.++ .|+|+| ++|++|+.|++|++||+++...... +..+.
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~-~~~~~---- 353 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT-TVSRF---- 353 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE-EEEEC----
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc-ccccc----
Confidence 89999999999999998753 23467899999999 568888 8999999999999999987654322 11111
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC
Q 006909 398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 477 (626)
Q Consensus 398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 477 (626)
....|.+++|+|++ ..+++++.|++|++||++..........|...|++++|+|+|++|++|+.|++|++||+......
T Consensus 354 ~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~ 432 (524)
T 2j04_B 354 RGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLH 432 (524)
T ss_dssp SCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTT
T ss_pred ccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcc
Confidence 11357899999997 68999999999999998764432223348899999999999999999999999999998764221
Q ss_pred CCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccc-cCCCCcccCCCcccCCccccCCCC---ccc
Q 006909 478 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN-LETAPWIRDSERFSLGSWFSNDGP---CRG 553 (626)
Q Consensus 478 ~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~s~dg~---~l~ 553 (626)
....... ......+..++|+|++..+.... + ..+..|.. -.....+.++...|.+++|+|++. .++
T Consensus 433 ~~~~~~~------~~~~~~v~~v~~sp~g~~~~~~~-~---~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lA 502 (524)
T 2j04_B 433 GIKNSSA------TQKSLRLWKWDYSIKDDKYRIDS-S---YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYA 502 (524)
T ss_dssp CC------------CCCCEEEECBCCSSSCEEEECC-C---CCCCC-------------CCCSCCCEEECCSTTTTTEEE
T ss_pred ccccCcc------ceeeeEEEEeccCCCCCeEEccC-C---ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHH
Confidence 1000000 00111233555566555332111 0 00111211 112234567778899999999965 788
Q ss_pred ccCCCCCCCCCCCccc
Q 006909 554 SATWPAEKLPLWDVTI 569 (626)
Q Consensus 554 s~~~~d~~i~vwd~~~ 569 (626)
+++. ++.|++|++.-
T Consensus 503 sg~~-~g~vrlw~l~~ 517 (524)
T 2j04_B 503 FSNS-AGLLTLEYLSL 517 (524)
T ss_dssp EECT-TSEEEEEECSC
T ss_pred hhcc-CceEEEEEccc
Confidence 8887 79999998764
No 47
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.9e-36 Score=307.80 Aligned_cols=335 Identities=11% Similarity=0.116 Sum_probs=223.7
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256 (626)
Q Consensus 177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (626)
++.|.++|++++|+|+|++||+|+.||.|+|||+.++.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~------------------------------------------ 44 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG------------------------------------------ 44 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE------------------------------------------
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc------------------------------------------
Confidence 44578899999999999999999999999999998631
Q ss_pred cCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe---eeEe-ecCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNV-FDHHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~---~~~~-~~~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
...+..+.+|...|.+++|+|++ +|++++.|++|++||+.++. .... ..|...|.+++|+| ++++|++++.|+
T Consensus 45 -~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~ 122 (377)
T 3dwl_C 45 -WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGAR 122 (377)
T ss_dssp -EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSS
T ss_pred -eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCC
Confidence 03456778899999999999987 89999999999999999877 3333 36999999999999 999999999999
Q ss_pred cEEEEeCCCCe----EEEecc-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee-----------eEEeecccc
Q 006909 332 KVRIWGVCEKR----VVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-----------EKVDFHDRK 395 (626)
Q Consensus 332 ~v~iwd~~~~~----~~~~~~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~-----------~~~~~~~~~ 395 (626)
.|++||+++++ ...+.. |...|.+++|+|++++|++++.||.|++||+....... .........
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (377)
T 3dwl_C 123 VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY 202 (377)
T ss_dssp CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC
T ss_pred eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc
Confidence 99999999876 344555 89999999999999999999999999999996432111 000111112
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee----eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909 396 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH----KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 396 ~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~ 471 (626)
.|...|++++|+|++ .+|++++.|+.|++||+.+... ......|...|.+++|+|++++|++++.++.+ +|+.
T Consensus 203 -~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 203 -PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG 279 (377)
T ss_dssp -CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred -cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence 566899999999998 7999999999999999775433 33334478899999999999999999866655 7766
Q ss_pred CCCCCCCCCccCCccceeeec--c-----CCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCcc
Q 006909 472 DELCFPSSKQKNSVRSCEHFF--S-----EGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSW 544 (626)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~--~-----~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 544 (626)
..................... + .+...++.++.....+......... .........|...+++++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~H~~~i~~~~ 351 (377)
T 3dwl_C 280 NESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSS--------QSISSLPTVHQNMIATLR 351 (377)
T ss_dssp CC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------------------------------CCCSSSCSSCEEEEE
T ss_pred CCCceEEEeeecccccccccccccccccccccccccccccccccccchhhcccc--------ccccccCccccceeEEEe
Confidence 533111111100000000000 0 0112233233222222211111000 011223445777788888
Q ss_pred ccCCCC----cccccCCCCCCCCCCCc
Q 006909 545 FSNDGP----CRGSATWPAEKLPLWDV 567 (626)
Q Consensus 545 ~s~dg~----~l~s~~~~d~~i~vwd~ 567 (626)
+.++.. .+++++. |+.|++||+
T Consensus 352 ~~~~~~~~~~~~~s~g~-Dg~i~iWdl 377 (377)
T 3dwl_C 352 PYAGTPGNITAFTSSGT-DGRVVLWTL 377 (377)
T ss_dssp EEEEETTEEEEEEEEET-TSEEEEECC
T ss_pred ccCCCCCceEEEEeecC-CCcEEEecC
Confidence 766543 4888888 899999985
No 48
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-34 Score=298.49 Aligned_cols=264 Identities=22% Similarity=0.355 Sum_probs=216.7
Q ss_pred ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
.....+.+|...|.+++|+|+|++||+|+.|+.|+||++.+.....
T Consensus 99 ~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~---------------------------------- 144 (380)
T 3iz6_a 99 QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD---------------------------------- 144 (380)
T ss_dssp EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC----------------------------------
T ss_pred ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc----------------------------------
Confidence 3456678999999999999999999999999999999997521100
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEee------cCCCCeEEEEEeeCCCCE
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF------DHHNYVTCVQFNPIDDNY 323 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~------~~~~~v~~~~~~p~~~~~ 323 (626)
........+.+|.+.|.++.|+|++ .|++|+.|++|++||+.+++.+..+ .|...|.+++|+|.++++
T Consensus 145 ----~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 220 (380)
T 3iz6_a 145 ----GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220 (380)
T ss_dssp ----CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCE
T ss_pred ----CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCE
Confidence 0012345678999999999999864 7999999999999999999988776 378899999998878899
Q ss_pred EEEEeCCCcEEEEeCCC-C-eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 324 FISGSIDGKVRIWGVCE-K-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~-~-~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
|++|+.|++|++||++. + ....+.+|...|.+++|+|++++|++|+.||+|++||++++...............+...
T Consensus 221 l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
T 3iz6_a 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300 (380)
T ss_dssp EEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCS
T ss_pred EEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCc
Confidence 99999999999999974 3 344577899999999999999999999999999999999876533211111111222345
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeee----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 402 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
|++++|+|+| .+|++|+.||.|++||.......... ..|...|.+++|+|+|++|++|+.|++|+||++.+.
T Consensus 301 v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 301 VTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CSEEEECSSS-SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred eEEEEECCCC-CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 8999999998 79999999999999997654433332 458889999999999999999999999999999864
No 49
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-34 Score=299.09 Aligned_cols=255 Identities=20% Similarity=0.295 Sum_probs=213.7
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
+.+.+.+|.+.|++++|+|++++||+|+.||.|+||++....
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-------------------------------------- 44 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------------------------- 44 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--------------------------------------
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--------------------------------------
Confidence 356788999999999999999999999999999999997421
Q ss_pred cccccCCCceeeccCccceEEEEEcCC--C-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEeeCC--CCEE
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYF 324 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~--~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p~~--~~~l 324 (626)
...+..+.+|...|++++|+++ + +|++++.|+.|++||+.+++ .+..+ .|...|.+++|+| + +.+|
T Consensus 45 -----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l 118 (379)
T 3jrp_A 45 -----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLL 118 (379)
T ss_dssp -----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEE
T ss_pred -----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEE
Confidence 2345678899999999999865 5 99999999999999999886 44555 4889999999999 7 8999
Q ss_pred EEEeCCCcEEEEeCCCC---eEEEeccCCCCeEEEEEee-------------CCCEEEEEecCCcEEEEEcCCCceeeeE
Q 006909 325 ISGSIDGKVRIWGVCEK---RVVDWADVRDVISAICYIP-------------DGKGFIVGSITGTCHFYKASGNDLKLEK 388 (626)
Q Consensus 325 ~s~s~dg~v~iwd~~~~---~~~~~~~~~~~i~~i~~sp-------------~g~~l~~g~~dg~i~i~d~~~~~~~~~~ 388 (626)
++++.|+.|++||++.+ .......|...|.+++|+| ++.++++++.||.|++||++........
T Consensus 119 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 198 (379)
T 3jrp_A 119 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 198 (379)
T ss_dssp EEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred EEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee
Confidence 99999999999999876 3445678899999999999 6999999999999999999876543321
Q ss_pred EeeccccccCCCCeEEEEEcCCC--CcEEEEEeCCCcEEEEeCCcc-----eeeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 006909 389 VDFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDV-----IHKFKGLPKSGSQMSASFTTTGKHIISIG 461 (626)
Q Consensus 389 ~~~~~~~~~~~~~i~~l~~s~~~--~~~l~~~s~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~sp~g~~l~s~s 461 (626)
.. ....|...|++++|+|++ ..+|++++.||.|++||+... ........+...|.+++|+|++++|++++
T Consensus 199 ~~---~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 199 ES---TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 275 (379)
T ss_dssp EE---EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred EE---EEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence 11 123346899999999993 389999999999999997753 23333445788999999999999999999
Q ss_pred CCccEEEEECCCC
Q 006909 462 DDCRVYVWNYDEL 474 (626)
Q Consensus 462 ~dg~I~iwd~~~~ 474 (626)
.||.|++|++...
T Consensus 276 ~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 276 GDNKVTLWKENLE 288 (379)
T ss_dssp SSSSEEEEEEEET
T ss_pred CCCcEEEEeCCCC
Confidence 9999999999853
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.5e-35 Score=304.98 Aligned_cols=333 Identities=12% Similarity=0.112 Sum_probs=242.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
..+++++|+|+|++|++|+.||.|++||+.+.. ..
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~---------------------------------------------~~ 91 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRD---------------------------------------------GS 91 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEE---------------------------------------------TT
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccc---------------------------------------------ee
Confidence 445689999999999999999999999988632 22
Q ss_pred eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909 262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 339 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~ 339 (626)
..+..| ..+....|++++ +|++++.|+.|++||+.+++....+ .|...|++++|+| ++++|++|+.|++|++||+.
T Consensus 92 ~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~ 169 (420)
T 3vl1_A 92 KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVK 169 (420)
T ss_dssp TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence 333344 344555678887 8999999999999999999998887 6999999999999 99999999999999999998
Q ss_pred CCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc-c-----------------cccCCC
Q 006909 340 EKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-R-----------------KKTSGN 400 (626)
Q Consensus 340 ~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~-~-----------------~~~~~~ 400 (626)
+++.. .+..|...|.+++|+|++++|++++.||.|++||+++.+.... +..+. . ...+..
T Consensus 170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 248 (420)
T 3vl1_A 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT-FNRKENPHDGVNSIALFVGTDRQLHEISTS 248 (420)
T ss_dssp TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE-ECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE-eecCCCCCCCccEEEEecCCcceeeecccC
Confidence 87654 4667999999999999999999999999999999988765332 21110 0 001124
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeee-cCCCCCeEEEEEcCCCC-EEEEEeCCccEEEEECCCCCCCC
Q 006909 401 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELCFPS 478 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~g~-~l~s~s~dg~I~iwd~~~~~~~~ 478 (626)
.+++++|+|++ .+|++++.||.|++||+......... ..|...|.+++|+|+++ +|++++.||.|++||+.++..+.
T Consensus 249 ~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 327 (420)
T 3vl1_A 249 KKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV 327 (420)
T ss_dssp CCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS
T ss_pred cccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch
Confidence 45555567887 79999999999999998865544443 34678999999999999 99999999999999999863321
Q ss_pred ---CCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCC----c
Q 006909 479 ---SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGP----C 551 (626)
Q Consensus 479 ---~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~----~ 551 (626)
..+......++ +.+++..++++-......+|.+......... ...........+...+..++|+||++ .
T Consensus 328 ~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l 403 (420)
T 3vl1_A 328 GEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPA---IEFETPTFLVSNDDAVSQFCYVSDDESNGEV 403 (420)
T ss_dssp EEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCE---ECTTSCEEECCSSCCCCEEEEECCSSSSCEE
T ss_pred hhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccc---eeccCccEEccCCcceEEEEEccCCCCcceE
Confidence 11223333333 3334555555444444445544432111100 00122234556677799999999999 4
Q ss_pred ccccCCCCCCCCCCCccc
Q 006909 552 RGSATWPAEKLPLWDVTI 569 (626)
Q Consensus 552 l~s~~~~d~~i~vwd~~~ 569 (626)
+++++ ++.+.+|++..
T Consensus 404 ~a~g~--~g~~~~~~~~~ 419 (420)
T 3vl1_A 404 LEVGK--NNFCALYNLSN 419 (420)
T ss_dssp EEEET--TTEEEEEESCC
T ss_pred EEEcC--CceEEEEeccC
Confidence 44444 48899998753
No 51
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=295.24 Aligned_cols=351 Identities=14% Similarity=0.202 Sum_probs=232.3
Q ss_pred cccccccccccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 171 LYTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
......+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++.........
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------------------------- 85 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK--------------------------- 85 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC---------------------------
T ss_pred CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc---------------------------
Confidence 344566788999999999999 9999999999999999999874321110000
Q ss_pred CCccccccCCCceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeC--CCCEEE
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI--DDNYFI 325 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~ 325 (626)
. ..........+|...|.+++|+| ++ +|++++.|+.|++||+.+++....+.+...+.++.++|. ++.+++
T Consensus 86 --~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (408)
T 4a11_B 86 --A---VCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVA 160 (408)
T ss_dssp --E---EEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEE
T ss_pred --c---cccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEE
Confidence 0 00000112246999999999999 55 899999999999999999999999999999999999983 234999
Q ss_pred EEeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEee---------ccc
Q 006909 326 SGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDF---------HDR 394 (626)
Q Consensus 326 s~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~---------~~~ 394 (626)
+++.|+.|++||+++++.. .+..|...|.+++|+|+++ .+++++.||.|++||++........+.. ...
T Consensus 161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
T 4a11_B 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240 (408)
T ss_dssp EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence 9999999999999987654 4567899999999999998 4889999999999999876543332211 111
Q ss_pred cccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecC-----CCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909 395 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLP-----KSGSQMSASFTTTGKHIISIGDDCRVYVW 469 (626)
Q Consensus 395 ~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~sp~g~~l~s~s~dg~I~iw 469 (626)
...|...|++++|+|++ .+|++++.|+.|++||+.+......... ....+........+..+++++.|+.|++|
T Consensus 241 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 319 (408)
T 4a11_B 241 NTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVY 319 (408)
T ss_dssp SCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEE
T ss_pred cccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEE
Confidence 23567899999999997 7999999999999999875433222111 11112222223345566777789999999
Q ss_pred ECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCC
Q 006909 470 NYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDG 549 (626)
Q Consensus 470 d~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg 549 (626)
|+.++. .+.. +..+...+.+++|+|+|
T Consensus 320 d~~~~~---------------------~~~~--------------------------------~~~~~~~v~~~~~s~~~ 346 (408)
T 4a11_B 320 TVYSGE---------------------QITM--------------------------------LKGHYKTVDCCVFQSNF 346 (408)
T ss_dssp ETTTCC---------------------EEEE--------------------------------ECCCSSCEEEEEEETTT
T ss_pred ECcCCc---------------------ceee--------------------------------eccCCCeEEEEEEcCCC
Confidence 997641 1110 11233456778899999
Q ss_pred CcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccccceEEEEecCCceEeeeeec
Q 006909 550 PCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY 620 (626)
Q Consensus 550 ~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~~ 620 (626)
+++++++. |+.|++||+.++. +...... ......+.+.......+++.||.|++|.+.
T Consensus 347 ~~l~s~~~-dg~i~iw~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 347 QELYSGSR-DCNILAWVPSLYE-----------PVPDDDE-TTTKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp TEEEEEET-TSCEEEEEECC---------------------------------------------------
T ss_pred CEEEEECC-CCeEEEEeCCCCC-----------ccCCCCc-eEeccccccccceeecccCccCceeecCCc
Confidence 99999888 7999999999872 1111111 111123333356667789999999999864
No 52
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.8e-34 Score=290.94 Aligned_cols=249 Identities=20% Similarity=0.290 Sum_probs=198.9
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
..+.+|++.|++++|+|+|++||+|+.|++|+|||+.++..
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~--------------------------------------- 47 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ--------------------------------------- 47 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------------------------
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------------------------
Confidence 45679999999999999999999999999999999976311
Q ss_pred cccCCCceeeccCccceEEEEEcCC--C-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEeeCC--CCEEEE
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFIS 326 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~--~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p~~--~~~l~s 326 (626)
..+..+.+|...|.+++|+++ + +|++|+.|++|++||+.++. ....+ .|...|.+++|+| + +.+|++
T Consensus 48 ----~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~g~~las 122 (316)
T 3bg1_A 48 ----ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP-HDYGLILAC 122 (316)
T ss_dssp ----EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECC-TTTCSCEEE
T ss_pred ----EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECC-CCCCcEEEE
Confidence 135678899999999999852 4 89999999999999998874 44444 4889999999999 6 789999
Q ss_pred EeCCCcEEEEeCCCCeE----EEeccCCCCeEEEEEeeC-----------------CCEEEEEecCCcEEEEEcCCCcee
Q 006909 327 GSIDGKVRIWGVCEKRV----VDWADVRDVISAICYIPD-----------------GKGFIVGSITGTCHFYKASGNDLK 385 (626)
Q Consensus 327 ~s~dg~v~iwd~~~~~~----~~~~~~~~~i~~i~~sp~-----------------g~~l~~g~~dg~i~i~d~~~~~~~ 385 (626)
|+.|++|++||++.+.. .....|...+.+++|+|+ +++|++|+.|+.|++||+......
T Consensus 123 gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~ 202 (316)
T 3bg1_A 123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW 202 (316)
T ss_dssp ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE
T ss_pred EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc
Confidence 99999999999987532 234578888999999997 478999999999999999754311
Q ss_pred eeEEeeccccccCCCCeEEEEEcCCC---CcEEEEEeCCCcEEEEeCCcc------eeeeeecCCCCCeEEEEEcCCCCE
Q 006909 386 LEKVDFHDRKKTSGNKITGIQFSRDE---SQRIMITSEDSKLRILDGVDV------IHKFKGLPKSGSQMSASFTTTGKH 456 (626)
Q Consensus 386 ~~~~~~~~~~~~~~~~i~~l~~s~~~---~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~sp~g~~ 456 (626)
.... ....|...|.+++|+|++ ..+|++++.|++|++|++... ...+. .|...|.+++|+|++++
T Consensus 203 ~~~~----~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~ 276 (316)
T 3bg1_A 203 KEEQ----KLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANI 276 (316)
T ss_dssp EEEE----CCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCC
T ss_pred ceee----ecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCE
Confidence 1111 133456899999999985 268999999999999997641 12233 36789999999999999
Q ss_pred EEEEeCCccEEEEECCC
Q 006909 457 IISIGDDCRVYVWNYDE 473 (626)
Q Consensus 457 l~s~s~dg~I~iwd~~~ 473 (626)
|++++.|++|++|+...
T Consensus 277 las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 277 LAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEESSSCEEEEEECT
T ss_pred EEEEcCCCeEEEEEECC
Confidence 99999999999999763
No 53
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-33 Score=292.88 Aligned_cols=249 Identities=24% Similarity=0.431 Sum_probs=209.2
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
.|...|++++|+|+|++||+|+.||+|+|||+.+ .
T Consensus 121 ~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~---------------------------------------------~ 155 (393)
T 1erj_A 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN---------------------------------------------R 155 (393)
T ss_dssp CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTT---------------------------------------------T
T ss_pred CCceeEEEEEECCCCCEEEEEcCCCeEEEEECCC---------------------------------------------C
Confidence 3555799999999999999999999999999987 3
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd 337 (626)
..+..+.+|...|.+++|+|++ +|++++.|++|++||+.++++...+.+...+.+++|+|.++++|++|+.|+.|++||
T Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd 235 (393)
T 1erj_A 156 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235 (393)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 3456788999999999999987 899999999999999999999998888899999999997889999999999999999
Q ss_pred CCCCeEEEe--------ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeE-----EeeccccccCCCCeEE
Q 006909 338 VCEKRVVDW--------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-----VDFHDRKKTSGNKITG 404 (626)
Q Consensus 338 ~~~~~~~~~--------~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~i~~ 404 (626)
++++..... .+|...|.+++|+|+|++|++|+.||.|++||+......... .........|...|.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 315 (393)
T 1erj_A 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 315 (393)
T ss_dssp TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE
T ss_pred CCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEE
Confidence 998876543 468889999999999999999999999999999764321110 0000112345678999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcC------CCCEEEEEeCCccEEEEECCC
Q 006909 405 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT------TGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 405 l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp------~g~~l~s~s~dg~I~iwd~~~ 473 (626)
++|+|++ .+|++++.|+.|++||..+.........|...|.+++|++ ++++|++|+.||+|+||++..
T Consensus 316 ~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 316 VATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEECGGG-CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEECCCC-CEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999997 7999999999999999876555555556889999999976 689999999999999999865
No 54
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.6e-34 Score=297.25 Aligned_cols=318 Identities=13% Similarity=0.141 Sum_probs=239.5
Q ss_pred ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
...+.+.+|.+.|++++|+| ++|++|+.||.|+||++.++....
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~---------------------------------- 50 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN---------------------------------- 50 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC----------------------------------
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccccc----------------------------------
Confidence 34567889999999999999 799999999999999998732100
Q ss_pred ccccccCCCceeeccCccceEEEEEcCC----C----eEEEEeCCCcEEEeccCCCee-----eEeec-C-----CCCeE
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNS----N----YLLSCSMDKTVRMWQVGCNQC-----LNVFD-H-----HNYVT 312 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~----~----~l~s~s~d~~v~iwd~~~~~~-----~~~~~-~-----~~~v~ 312 (626)
....+..+.+|...|.+++|+|+ + +|++++.|+.|++||+.+++. +..+. | ...|.
T Consensus 51 -----~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 125 (397)
T 1sq9_A 51 -----PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 125 (397)
T ss_dssp -----GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE
T ss_pred -----CCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEE
Confidence 01246777899999999999998 5 789999999999999998876 66664 5 48999
Q ss_pred EEEEe----eCCCCE-EEEEeCCCcEEEEeCCC------CeEE------Ee-------ccCCCCeEEEEEeeCCCEEEEE
Q 006909 313 CVQFN----PIDDNY-FISGSIDGKVRIWGVCE------KRVV------DW-------ADVRDVISAICYIPDGKGFIVG 368 (626)
Q Consensus 313 ~~~~~----p~~~~~-l~s~s~dg~v~iwd~~~------~~~~------~~-------~~~~~~i~~i~~sp~g~~l~~g 368 (626)
+++|+ | ++++ |++++.||.|++||+.. ++.+ .+ ..+...|.+++|+|++ .++++
T Consensus 126 ~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~ 203 (397)
T 1sq9_A 126 ALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG 203 (397)
T ss_dssp EEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE
T ss_pred EEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEE
Confidence 99999 8 8999 99999999999999987 4432 33 3478899999999999 99999
Q ss_pred ecCCcEEEEEcCCCceeeeEEeeccccccC---CCCeEEEEEcCCCCcEEEEEeCC---CcEEEEeCCcceeeeeecC--
Q 006909 369 SITGTCHFYKASGNDLKLEKVDFHDRKKTS---GNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLP-- 440 (626)
Q Consensus 369 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~i~~l~~s~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~-- 440 (626)
+.||.|++||+++...... +.. ...| ...|++++|+|++ .+|++++.| +.|++||+.+.........
T Consensus 204 ~~dg~i~i~d~~~~~~~~~-~~~---~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~ 278 (397)
T 1sq9_A 204 FNNGTVQISELSTLRPLYN-FES---QHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 278 (397)
T ss_dssp CTTSEEEEEETTTTEEEEE-EEC---CC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred eCCCcEEEEECCCCceeEE-Eec---cccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcccceeccCc
Confidence 9999999999987654322 222 0113 4789999999997 799999999 9999999876554444444
Q ss_pred -----------CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCccc
Q 006909 441 -----------KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQ 509 (626)
Q Consensus 441 -----------~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l 509 (626)
|...|.+++|+|++++|++++.|+.|++||+.++.... .+. ..-...+..
T Consensus 279 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------~~~-------~~~~~~~~~- 339 (397)
T 1sq9_A 279 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT-----------TLN-------MHCDDIEIE- 339 (397)
T ss_dssp -------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-----------EEE-------CCGGGCSSG-
T ss_pred ccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeE-----------EEe-------cccCcccch-
Confidence 78899999999999999999999999999998641100 000 000000000
Q ss_pred ccccCCCccccCccccccCCCCcccCCCcccCCccccCCC----------CcccccCCCCCCCCCCCcccC
Q 006909 510 KSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDG----------PCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 510 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg----------~~l~s~~~~d~~i~vwd~~~~ 570 (626)
.+... ........+...+.+++|+|+| +++++++. |+.|++|++.++
T Consensus 340 ----~~~~~---------g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~g 396 (397)
T 1sq9_A 340 ----EDILA---------VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL-DRSIRWFREAGG 396 (397)
T ss_dssp ----GGCCC---------BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET-TTEEEEEEEEC-
T ss_pred ----hhhhc---------cccccccccCCceeEEEeccccccccccccccceEEEecC-CCcEEEEEcCCC
Confidence 00000 0001123356678899999998 68888888 799999999876
No 55
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-33 Score=284.73 Aligned_cols=254 Identities=24% Similarity=0.371 Sum_probs=192.8
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
+|.+.|++++|+|++++||+|+.|++|+||++...... ....
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~--------------------------------------~~~~ 97 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR--------------------------------------TFEM 97 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC---------------------------------------------CCC
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc--------------------------------------cccc
Confidence 49999999999999999999999999999998642100 0012
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC-C---eeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-N---QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~-~---~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
.++..+.+|...|.+++|+|++ +|++|+.|++|++||+.. + +++..+ .|...|.+++|+| ++.+|++|+.|++
T Consensus 98 ~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~ 176 (330)
T 2hes_X 98 DLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDT 176 (330)
T ss_dssp EEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSC
T ss_pred eeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCe
Confidence 3456788999999999999988 899999999999999943 2 455555 4889999999999 9999999999999
Q ss_pred EEEEeCCCC--e-EEEeccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceee-eEEee-ccccccCCCCeEEE
Q 006909 333 VRIWGVCEK--R-VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKL-EKVDF-HDRKKTSGNKITGI 405 (626)
Q Consensus 333 v~iwd~~~~--~-~~~~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~-~~~~~-~~~~~~~~~~i~~l 405 (626)
|++||..++ + +..+.+|...|.+++|+|+ +..|++|+.|++|++||+....... ..... ......|...|.++
T Consensus 177 i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 256 (330)
T 2hes_X 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNV 256 (330)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEE
T ss_pred EEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEE
Confidence 999998765 2 3456789999999999998 7789999999999999987542110 00011 11112256899999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCcce--eee-eecCCCC-CeEEEEEcC--CCCEEEEEeCCccEEEEECCC
Q 006909 406 QFSRDESQRIMITSEDSKLRILDGVDVI--HKF-KGLPKSG-SQMSASFTT--TGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~--~~~-~~~~~~~-~v~~~~~sp--~g~~l~s~s~dg~I~iwd~~~ 473 (626)
+|++++ +|++++.||.|++||..... ... ....|.. .|.+++|+| ++++|++|+.||+|++|++++
T Consensus 257 ~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 257 AWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 999774 89999999999999976432 111 1234665 899999999 789999999999999999875
No 56
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2e-33 Score=291.32 Aligned_cols=281 Identities=11% Similarity=0.173 Sum_probs=212.0
Q ss_pred ccccccccccccCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909 170 ALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 248 (626)
Q Consensus 170 ~~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (626)
...+.+.+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.++...
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------------- 109 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-------------------------------- 109 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE--------------------------------
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc--------------------------------
Confidence 445566788999999999999999 89999999999999999863211
Q ss_pred cCCccccccCCCceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCE
Q 006909 249 IPDEVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNY 323 (626)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~ 323 (626)
......+|...|.+++|+| ++ +|++++.|+.|++||+.+........ +...|.+++|+| ++++
T Consensus 110 -----------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 177 (383)
T 3ei3_B 110 -----------SFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV-SRQM 177 (383)
T ss_dssp -----------EEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEET-TTTE
T ss_pred -----------eeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECC-CCCE
Confidence 1122347999999999999 44 89999999999999999644333333 447899999999 9999
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909 324 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 402 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i 402 (626)
|++|+.|+.|++||++...+..+..|...|.+++|+|+++ ++++++.|+.|++||+++........... .|...|
T Consensus 178 l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v 253 (383)
T 3ei3_B 178 LATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM----PHEKPV 253 (383)
T ss_dssp EEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE----ECSSCE
T ss_pred EEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe----cCCCce
Confidence 9999999999999998777777888999999999999999 89999999999999998743221111111 135799
Q ss_pred EEEEEcC-CCCcEEEEEeCCCcEEEEeCCcc--eeeeeecC-----CC----------CCeEEEEEcCCCCEEEEEeCCc
Q 006909 403 TGIQFSR-DESQRIMITSEDSKLRILDGVDV--IHKFKGLP-----KS----------GSQMSASFTTTGKHIISIGDDC 464 (626)
Q Consensus 403 ~~l~~s~-~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~-----~~----------~~v~~~~~sp~g~~l~s~s~dg 464 (626)
++++|+| ++ .+|++++.|+.|++||+.+. ...+..+. +. ..+..++|+|++++ +++.|+
T Consensus 254 ~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~ 330 (383)
T 3ei3_B 254 NAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKR 330 (383)
T ss_dssp EEEEECTTTS-CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCC
T ss_pred EEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCC
Confidence 9999999 87 79999999999999998743 23333321 12 33445666677766 777899
Q ss_pred cEEEEECCCCCCCCCC--c-cCCccceeeeccCCcEEEEe
Q 006909 465 RVYVWNYDELCFPSSK--Q-KNSVRSCEHFFSEGVSVAVQ 501 (626)
Q Consensus 465 ~I~iwd~~~~~~~~~~--~-~~~~~~~~~~~~~g~~~av~ 501 (626)
.|++||+.++...... + ......++.|+|++..++.+
T Consensus 331 ~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~ 370 (383)
T 3ei3_B 331 TIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG 370 (383)
T ss_dssp CEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred eEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe
Confidence 9999999876322111 1 12333444555555554444
No 57
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.8e-34 Score=299.30 Aligned_cols=302 Identities=14% Similarity=0.200 Sum_probs=217.6
Q ss_pred ceeeccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909 261 LQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 335 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i 335 (626)
.....+|...|++|+|+|. + +|++|+.||+|+|||+.++.....+ +|...|++++|+|.++++|++|+.||+|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 4556789999999999985 3 8999999999999999877544333 599999999999977899999999999999
Q ss_pred EeCCCCeEEEecc---CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909 336 WGVCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 336 wd~~~~~~~~~~~---~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
||++++....... +...+.+++|+|++++|++|+.||.|++||+++.... ....|...|++++|+|++.
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~--------~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW--------NLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC--------CSBCCSSCEEEEEECTTCS
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE--------EEecccceEEeeeecCCCc
Confidence 9998876554433 3456789999999999999999999999999764321 1334568999999999987
Q ss_pred cEEEEEeCCCcEEEEeCCccee---eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCC--ccCCccc
Q 006909 413 QRIMITSEDSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK--QKNSVRS 487 (626)
Q Consensus 413 ~~l~~~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~--~~~~~~~ 487 (626)
.++++++.|+.|+|||++.... ......|...|.+++|+|+|++|++++.||.|+|||+.++..+... +.....
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~- 342 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF- 342 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC-
T ss_pred eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc-
Confidence 7899999999999999874322 2222457889999999999999999999999999999876322111 000000
Q ss_pred eeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCc
Q 006909 488 CEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV 567 (626)
Q Consensus 488 ~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~ 567 (626)
.....+...|++++. ...+++++|+..++.....++.|++||.
T Consensus 343 -----~~~~~~~~~~~~~~~--------------------------------~~~~~~~~d~~~~~~~~~~~~~i~iwd~ 385 (435)
T 4e54_B 343 -----QHLTPIKAAWHPRYN--------------------------------LIVVGRYPDPNFKSCTPYELRTIDVFDG 385 (435)
T ss_dssp -----SSSCCCBCEECSSSS--------------------------------CEEEECCCCTTSCCSSTTCCCCEEEECS
T ss_pred -----ccceeEEEEEcCCCC--------------------------------EEEEEEcCCCCeEEEEecCCCEEEEEEC
Confidence 000000111122111 2223455666655555554567999999
Q ss_pred ccCCCCCCCChhhHHHHhhhccCCcccc---ccccccceEEEEecCCceEeeeeec
Q 006909 568 TIDSDGYCQDPQQQRLQQQCLNNVDDVR---AISATWGLVIVTAGCDGMIKTFHNY 620 (626)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~~dg~~ivt~g~Dg~Irvw~~~ 620 (626)
.++. ....+..++...+. ++++ +|.+||+|+ |++|+||+..
T Consensus 386 ~~g~----------~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 386 NSGK----------MMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp SSCC----------EEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC
T ss_pred CCCc----------EEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECC
Confidence 8872 11122223333333 3555 899999887 8899999954
No 58
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.7e-32 Score=278.16 Aligned_cols=273 Identities=15% Similarity=0.235 Sum_probs=223.4
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
.+|.+.|++++|+|++++|++++ ||.|++|++.++..
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~------------------------------------------ 84 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN------------------------------------------ 84 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC------------------------------------------
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc------------------------------------------
Confidence 37999999999999999999999 99999999986321
Q ss_pred CCCceeec--cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 258 ESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 258 ~~~~~~~~--~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
...+..+. +|...|.+++|+|++ +|++++.|+.|++||+.+++ ....+ .|...|.+++|+| +++++++++.||
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg 163 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDG 163 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTS
T ss_pred eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCC
Confidence 12233333 789999999999987 89999999999999999877 33344 4888999999999 999999999999
Q ss_pred cEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 332 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 332 ~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
.|++||+++++... +..|...+.+++|+|+++++++++.||.|++||+++...... .. +...+.+++|+|+
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~-------~~~~v~~~~~s~~ 235 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HD-------FTSQIFSLGYCPT 235 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EE-------CSSCEEEEEECTT
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee-ec-------CCCceEEEEECCC
Confidence 99999999887654 556889999999999999999999999999999988765332 21 2368999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceee
Q 006909 411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH 490 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 490 (626)
+ .++++++.++.|++||+..... .....|...+.+++|+|++++|++++.||.|++||+.++.... .
T Consensus 236 ~-~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-----------~ 302 (337)
T 1gxr_A 236 G-EWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-----------Q 302 (337)
T ss_dssp S-SEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----------E
T ss_pred C-CEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE-----------E
Confidence 7 7999999999999999875543 3445588999999999999999999999999999998763221 1
Q ss_pred eccCCcEEEEecCCCCcccccccCC
Q 006909 491 FFSEGVSVAVQWPGIGTEQKSLCSS 515 (626)
Q Consensus 491 ~~~~g~~~av~~s~~~~~l~~~~~~ 515 (626)
..+.+.+.+++|+|++..++..+.+
T Consensus 303 ~~~~~~v~~~~~s~~~~~l~~~~~d 327 (337)
T 1gxr_A 303 SKESSSVLSCDISVDDKYIVTGSGD 327 (337)
T ss_dssp EECSSCEEEEEECTTSCEEEEEETT
T ss_pred ecCCCcEEEEEECCCCCEEEEecCC
Confidence 2234556677777777766655443
No 59
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.2e-34 Score=291.98 Aligned_cols=308 Identities=15% Similarity=0.240 Sum_probs=230.9
Q ss_pred ccccccccCcEEEEEEcCCCCEE-EEEeC---CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYL-ASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~L-atgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
.+.+++|.+.|++++|+|++..+ ++|+. ||.|+|||+.++...
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~--------------------------------- 57 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK--------------------------------- 57 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE---------------------------------
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc---------------------------------
Confidence 34557899999999999999654 56665 999999999874221
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCC----CeEEEEeCCCcEEEeccCCCe-eeEee-cCCCCeEEEEE------e
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNS----NYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQF------N 317 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~----~~l~s~s~d~~v~iwd~~~~~-~~~~~-~~~~~v~~~~~------~ 317 (626)
.....+|...|.+++|+|+ .+|++++.|+.|++||+.+++ .+..+ .|...|.+++| +
T Consensus 58 -----------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s 126 (357)
T 3i2n_A 58 -----------LLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIG 126 (357)
T ss_dssp -----------EEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC
T ss_pred -----------ceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccC
Confidence 1223378999999999997 489999999999999999887 66666 48899999965 5
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCe--EEEeccCC----CCeEEEE----EeeCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909 318 PIDDNYFISGSIDGKVRIWGVCEKR--VVDWADVR----DVISAIC----YIPDGKGFIVGSITGTCHFYKASGNDLKLE 387 (626)
Q Consensus 318 p~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~----~~i~~i~----~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~ 387 (626)
| ++++|++++.||.|++||+.++. ...+..+. ..+.+++ |+|+++++++++.||.|++||+++......
T Consensus 127 ~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 205 (357)
T 3i2n_A 127 E-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE 205 (357)
T ss_dssp --CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred C-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee
Confidence 6 89999999999999999998865 33343333 3788888 788999999999999999999998765321
Q ss_pred EEeeccccccCCCCeEEEEEcC---CCCcEEEEEeCCCcEEEEeCCccee--ee---eecCCCCCeEEEEEcCCCC-EEE
Q 006909 388 KVDFHDRKKTSGNKITGIQFSR---DESQRIMITSEDSKLRILDGVDVIH--KF---KGLPKSGSQMSASFTTTGK-HII 458 (626)
Q Consensus 388 ~~~~~~~~~~~~~~i~~l~~s~---~~~~~l~~~s~dg~i~iwd~~~~~~--~~---~~~~~~~~v~~~~~sp~g~-~l~ 458 (626)
..+...|.+++|+| ++ .++++++.||.|++||+..... .+ ....|...|.+++|+|+++ +|+
T Consensus 206 --------~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 206 --------TNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFL 276 (357)
T ss_dssp --------EECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred --------cCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEE
Confidence 11247899999999 76 7999999999999999764322 22 1225889999999999998 899
Q ss_pred EEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCc
Q 006909 459 SIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSER 538 (626)
Q Consensus 459 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 538 (626)
+++.||.|++||+..+...... .++|..... ... .........+..
T Consensus 277 ~~~~dg~i~iwd~~~~~~~~~~-----------~~~g~~~~~-----------~~~------------~~~~~~~~~~~~ 322 (357)
T 3i2n_A 277 TAGGAGGLHLWKYEYPIQRSKK-----------DSEGIEMGV-----------AGS------------VSLLQNVTLSTQ 322 (357)
T ss_dssp EEETTSEEEEEEEECCSCC--C-----------CTTSCCCCC-----------CCE------------EEEEEEEECCSS
T ss_pred EEeCCCcEEEeecCCCcccccc-----------cCCCCcccc-----------ccc------------cceeeccccCCC
Confidence 9999999999999875322111 111110000 000 001111344566
Q ss_pred ccCCccccCCCCccc-ccCCCCCCCCCCCcccC
Q 006909 539 FSLGSWFSNDGPCRG-SATWPAEKLPLWDVTID 570 (626)
Q Consensus 539 ~~~~~~~s~dg~~l~-s~~~~d~~i~vwd~~~~ 570 (626)
.+.+++|+|+|++++ +++. |+.|++||+.+.
T Consensus 323 ~v~~~~~s~~~~~l~~s~~~-d~~i~iw~~~~~ 354 (357)
T 3i2n_A 323 PISSLDWSPDKRGLCVCSSF-DQTVRVLIVTKL 354 (357)
T ss_dssp CEEEEEECSSSTTEEEEEET-TSEEEEEEECC-
T ss_pred CeeEEEEcCCCCeEEEEecC-CCcEEEEECCCc
Confidence 789999999999998 6777 799999999865
No 60
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.8e-32 Score=275.66 Aligned_cols=249 Identities=25% Similarity=0.379 Sum_probs=208.7
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
..+.+.+|...|++++|+|++++|++|+.||.|++||+.+
T Consensus 57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~---------------------------------------- 96 (312)
T 4ery_A 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---------------------------------------- 96 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------------------------
T ss_pred cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC----------------------------------------
Confidence 3456779999999999999999999999999999999987
Q ss_pred cccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCC
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 330 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~d 330 (626)
...+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |..+|.+++|+| ++++|++++.|
T Consensus 97 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 170 (312)
T 4ery_A 97 -----GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYD 170 (312)
T ss_dssp -----CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred -----CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCC
Confidence 34467788999999999999987 89999999999999999999888875 888999999999 99999999999
Q ss_pred CcEEEEeCCCCeEEEe--ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909 331 GKVRIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408 (626)
Q Consensus 331 g~v~iwd~~~~~~~~~--~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 408 (626)
|.|++||+++++.... ..+...+..++|+|++++|++++.||.|++||+.+...... +..+.. ........++
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~----~~~~~~~~~~ 245 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT-YTGHKN----EKYCIFANFS 245 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE-ECSSCC----SSSCCCEEEE
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-EEecCC----ceEEEEEEEE
Confidence 9999999998876543 34567899999999999999999999999999988765322 211110 1122233444
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe--CCccEEEEECC
Q 006909 409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYD 472 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s--~dg~I~iwd~~ 472 (626)
+.+..++++++.||.|++||+.+.........|...|.+++|+|++++|++++ .|++|++|+.+
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred eCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 43347999999999999999886655555556889999999999999999997 69999999965
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.2e-32 Score=291.54 Aligned_cols=322 Identities=16% Similarity=0.274 Sum_probs=249.0
Q ss_pred ccccccccccCcE-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 172 YTSQEIQAHKGCI-WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 172 ~~~~~l~~H~~~V-~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
...+.+.+|.+.| ++ ++++|++|++|+.||+|++||+.+
T Consensus 109 ~~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~-------------------------------------- 148 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVT-------------------------------------- 148 (445)
T ss_dssp CCCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTT--------------------------------------
T ss_pred ceeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCC--------------------------------------
Confidence 3556789999875 55 455689999999999999999987
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeC
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~ 329 (626)
...+..+.+|...|.+++|+ ++.+++|+.|++|++||+.+++++..+. |...|.+++|+ ++.+++|+.
T Consensus 149 -------~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~ 217 (445)
T 2ovr_B 149 -------GKCLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSR 217 (445)
T ss_dssp -------CCEEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEET
T ss_pred -------CcEEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec---CCEEEEEeC
Confidence 34467788999999999998 4599999999999999999999988885 88999999995 578999999
Q ss_pred CCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909 330 DGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408 (626)
Q Consensus 330 dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 408 (626)
||+|++||+.+++.. .+..|...|.++++ +++++++|+.||.|++||+.+...... + ..|...|.++.|
T Consensus 218 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~-~------~~~~~~v~~~~~- 287 (445)
T 2ovr_B 218 DATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT-L------QGHTNRVYSLQF- 287 (445)
T ss_dssp TSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEE-E------CCCSSCEEEEEE-
T ss_pred CCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEE-e------cCCCCceEEEEE-
Confidence 999999999987765 45678899999998 788999999999999999987754322 2 234578999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccce
Q 006909 409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC 488 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 488 (626)
++ .++++++.|+.|++||+.+.........|...+.++.+ ++++|++++.||.|++||+.++..
T Consensus 288 -~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~------------ 351 (445)
T 2ovr_B 288 -DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQC------------ 351 (445)
T ss_dssp -CS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE------------
T ss_pred -CC-CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcE------------
Confidence 44 68999999999999998866555555567888888776 477999999999999999976411
Q ss_pred eeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcc
Q 006909 489 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT 568 (626)
Q Consensus 489 ~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~ 568 (626)
+..--. ...+...+.+++| +++++++++. |+.|++||+.
T Consensus 352 ---------~~~~~~-----------------------------~~~~~~~v~~~~~--~~~~l~s~~~-dg~v~iwd~~ 390 (445)
T 2ovr_B 352 ---------LQTLQG-----------------------------PNKHQSAVTCLQF--NKNFVITSSD-DGTVKLWDLK 390 (445)
T ss_dssp ---------EEEECS-----------------------------TTSCSSCEEEEEE--CSSEEEEEET-TSEEEEEETT
T ss_pred ---------EEEEcc-----------------------------CCCCCCCEEEEEE--CCCEEEEEeC-CCeEEEEECC
Confidence 000000 0012223444445 3567888877 7999999998
Q ss_pred cCCCCCCCChhhHHHHhhh-----ccCCccc--cccccccceEEEEecCCce----EeeeeecCcc
Q 006909 569 IDSDGYCQDPQQQRLQQQC-----LNNVDDV--RAISATWGLVIVTAGCDGM----IKTFHNYGLP 623 (626)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~s~~dg~~ivt~g~Dg~----Irvw~~~g~p 623 (626)
++. ..... ..+.+.+ .++++ +|.++++|+.||+ |.+|+.-.-|
T Consensus 391 ~~~-----------~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 391 TGE-----------FIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp TCC-----------EEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred CCc-----------eeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCCCC
Confidence 872 11111 1233333 34555 8999999999998 9999986644
No 62
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.1e-34 Score=291.07 Aligned_cols=300 Identities=14% Similarity=0.154 Sum_probs=228.9
Q ss_pred ccccccCcEEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 176 EIQAHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 176 ~l~~H~~~V~~l~fspd----g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
...+|.+.|++++|+|+ ...+++++.++.|++||+.++....
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~---------------------------------- 58 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR---------------------------------- 58 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE----------------------------------
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE----------------------------------
Confidence 34589999999999984 4466666667799999998632210
Q ss_pred ccccccCCCce--eeccCccceEEEEEcCC----C-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCE
Q 006909 252 EVFQIEESPLQ--ELHGHKGDVLDLAWSNS----N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY 323 (626)
Q Consensus 252 ~~~~~~~~~~~--~~~~h~~~V~~l~~s~~----~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~ 323 (626)
.+. ....|...|++++|+|+ + +|++|+.|+.|++||+.+++.+..+. |...|.+++|+|.++++
T Consensus 59 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 130 (366)
T 3k26_A 59 --------LLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNL 130 (366)
T ss_dssp --------EEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTE
T ss_pred --------eeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCE
Confidence 011 11236788999999987 4 79999999999999999999988886 99999999999977899
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEe----ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEe---------
Q 006909 324 FISGSIDGKVRIWGVCEKRVVDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD--------- 390 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~~~~~~~----~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~--------- 390 (626)
|++|+.||.|++||+++++.... ..|...|.+++|+|++++|++++.||.|++||+.+.........
T Consensus 131 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 210 (366)
T 3k26_A 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT 210 (366)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGC
T ss_pred EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCC
Confidence 99999999999999999887765 47899999999999999999999999999999987543211000
Q ss_pred ------------eccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee--------------eeeecCCCCC
Q 006909 391 ------------FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--------------KFKGLPKSGS 444 (626)
Q Consensus 391 ------------~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~ 444 (626)
.......|...|.+++|+ + .++++++.|+.|++||+.+... ......|...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (366)
T 3k26_A 211 NRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD 287 (366)
T ss_dssp SSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC
T ss_pred cccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc
Confidence 000112256899999999 3 5999999999999999764321 2233447788
Q ss_pred eEEEEEcCC--CCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCc
Q 006909 445 QMSASFTTT--GKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQ 522 (626)
Q Consensus 445 v~~~~~sp~--g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~ 522 (626)
|.+++|+|+ +++|++++.||.|++||+.++..... ... .+.
T Consensus 288 v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-----------------~~~-~~~------------------- 330 (366)
T 3k26_A 288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA-----------------KCT-TLT------------------- 330 (366)
T ss_dssp SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC-----------------EEE-EEC-------------------
T ss_pred EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc-----------------cce-EEc-------------------
Confidence 999999999 99999999999999999987521100 000 000
Q ss_pred cccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcc
Q 006909 523 KWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT 568 (626)
Q Consensus 523 ~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~ 568 (626)
...+...+..++|+|+|+++++++. |+.|++||+.
T Consensus 331 ----------~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~ 365 (366)
T 3k26_A 331 ----------HHKCGAAIRQTSFSRDSSILIAVCD-DASIWRWDRL 365 (366)
T ss_dssp ----------CTTCCSCEEEEEECTTSSEEEEEET-TSEEEEEEC-
T ss_pred ----------ccccCCceEEEEeCCCCCeEEEEeC-CCEEEEEEec
Confidence 0011345677788888888888887 7899999875
No 63
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-33 Score=290.01 Aligned_cols=249 Identities=11% Similarity=0.203 Sum_probs=209.2
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
.|.+.|++++|+|++++||+|+.||.|++|++.+... ..
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-----------------------------------------~~ 103 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-----------------------------------------AI 103 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-----------------------------------------CC
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-----------------------------------------cc
Confidence 5899999999999999999999999999999976210 01
Q ss_pred CCceeeccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCe------eeEee----cCCCCeEEEEEeeCC-CCEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQ------CLNVF----DHHNYVTCVQFNPID-DNYFI 325 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~------~~~~~----~~~~~v~~~~~~p~~-~~~l~ 325 (626)
..+..+.+|...|.+++|+|+ + +|++++.|+.|++||+.+++ ....+ .|...|.+++|+| + +.+|+
T Consensus 104 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~ 182 (416)
T 2pm9_A 104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ-SLAHVFA 182 (416)
T ss_dssp CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECS-SCTTEEE
T ss_pred cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCC-CCCcEEE
Confidence 346677899999999999997 5 89999999999999998876 33322 4888999999999 6 89999
Q ss_pred EEeCCCcEEEEeCCCCeEEEecc-C------CCCeEEEEEeeCC-CEEEEEecCC---cEEEEEcCCCceeeeEEeeccc
Q 006909 326 SGSIDGKVRIWGVCEKRVVDWAD-V------RDVISAICYIPDG-KGFIVGSITG---TCHFYKASGNDLKLEKVDFHDR 394 (626)
Q Consensus 326 s~s~dg~v~iwd~~~~~~~~~~~-~------~~~i~~i~~sp~g-~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~ 394 (626)
+++.|+.|++||+++++...... + ...|.+++|+|++ .++++++.++ .|++||+++.......+.
T Consensus 183 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~---- 258 (416)
T 2pm9_A 183 SAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN---- 258 (416)
T ss_dssp EESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC----
T ss_pred EEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee----
Confidence 99999999999999987665433 3 6889999999997 6899999998 999999987643332221
Q ss_pred cccCCCCeEEEEEcC-CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCC-CEEEEEeCCccEEEEECC
Q 006909 395 KKTSGNKITGIQFSR-DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 395 ~~~~~~~i~~l~~s~-~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~s~s~dg~I~iwd~~ 472 (626)
..|...|++++|+| ++ .+|++++.|+.|++||+.+.........|...|.+++|+|++ .+|++++.|+.|++|++.
T Consensus 259 -~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 259 -QGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp -SCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred -cCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 13458999999999 65 799999999999999988665555555588899999999999 899999999999999998
Q ss_pred CCC
Q 006909 473 ELC 475 (626)
Q Consensus 473 ~~~ 475 (626)
+..
T Consensus 337 ~~~ 339 (416)
T 2pm9_A 337 NLT 339 (416)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 64
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.1e-32 Score=281.76 Aligned_cols=251 Identities=17% Similarity=0.271 Sum_probs=207.0
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256 (626)
Q Consensus 177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (626)
+..|.++|++++|+|+|++||+|+.||.|++||+.++.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~------------------------------------------ 41 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------------------------------------------ 41 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------------------------------------------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc------------------------------------------
Confidence 45699999999999999999999999999999998631
Q ss_pred cCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
...+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++....+ .|...|.+++|+| ++++|++++.|+.
T Consensus 42 -~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 119 (372)
T 1k8k_C 42 -WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRV 119 (372)
T ss_dssp -EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSS
T ss_pred -EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCE
Confidence 01467788999999999999987 8999999999999999988755443 5888999999999 9999999999999
Q ss_pred EEEEeCCCCe----EEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee-----------eEEeeccccc
Q 006909 333 VRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-----------EKVDFHDRKK 396 (626)
Q Consensus 333 v~iwd~~~~~----~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~-----------~~~~~~~~~~ 396 (626)
|++||+..+. ... ...|...|.+++|+|++++|++++.||.|++||+....... ..........
T Consensus 120 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
T 1k8k_C 120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199 (372)
T ss_dssp EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence 9999998765 222 35678999999999999999999999999999975221000 0000000122
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 397 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 397 ~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
.|...|++++|+|++ .+|++++.|+.|++||+.+.........|...+.+++|+|++++|+++ .|+.|++|++.+
T Consensus 200 ~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 200 SSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp CCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 445789999999997 799999999999999987555444444578899999999999988888 899999999987
No 65
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.5e-33 Score=293.95 Aligned_cols=258 Identities=16% Similarity=0.270 Sum_probs=198.0
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
.|.+.|++++|+|+|++||+|+.||.|+||++.++....... ..+.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~----------------------------------~~~~ 71 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS----------------------------------RGEY 71 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC----------------------------------CCCE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc----------------------------------ccce
Confidence 478999999999999999999999999999998743110000 0001
Q ss_pred CCceeeccCc------------cceEEEEEcCCC---eEEEEeCCCcEEEeccCCCeee---------------------
Q 006909 259 SPLQELHGHK------------GDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCL--------------------- 302 (626)
Q Consensus 259 ~~~~~~~~h~------------~~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~~~~~--------------------- 302 (626)
.....+.+|. ..|++++|+|++ .|++++.|++|++||+.++...
T Consensus 72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 151 (447)
T 3dw8_B 72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT 151 (447)
T ss_dssp EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCS
T ss_pred eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccc
Confidence 2356777888 889999999974 8999999999999999765442
Q ss_pred ------------------Ee--ecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CeEEE--------eccCCCCe
Q 006909 303 ------------------NV--FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVD--------WADVRDVI 353 (626)
Q Consensus 303 ------------------~~--~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-~~~~~--------~~~~~~~i 353 (626)
.. ..|...|.+++|+| ++++|++| .|+.|++||++. ++... ...|...|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 229 (447)
T 3dw8_B 152 LRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVI 229 (447)
T ss_dssp CCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCE
T ss_pred eEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcce
Confidence 12 24889999999999 99999998 799999999984 44443 45788999
Q ss_pred EEEEEeeCC-CEEEEEecCCcEEEEEcCCCceee---eEEeeccc------cccCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 006909 354 SAICYIPDG-KGFIVGSITGTCHFYKASGNDLKL---EKVDFHDR------KKTSGNKITGIQFSRDESQRIMITSEDSK 423 (626)
Q Consensus 354 ~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~---~~~~~~~~------~~~~~~~i~~l~~s~~~~~~l~~~s~dg~ 423 (626)
.+++|+|++ ++|++|+.||.|++||+++..... ..+..+.. ...+...|++++|+|++ .+|++++. +.
T Consensus 230 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~ 307 (447)
T 3dw8_B 230 TAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LS 307 (447)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SE
T ss_pred EEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-Ce
Confidence 999999998 999999999999999998876421 12211110 00112389999999997 78999988 99
Q ss_pred EEEEeCCc---ceeeeeecCCCC-------------CeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 424 LRILDGVD---VIHKFKGLPKSG-------------SQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 424 i~iwd~~~---~~~~~~~~~~~~-------------~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
|++||+.. ....+..+.... .+..++|+|++++|++|+.||.|++||+.++
T Consensus 308 v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 308 VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp EEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred EEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 99999864 334444421110 1334999999999999999999999999986
No 66
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=297.03 Aligned_cols=329 Identities=13% Similarity=0.132 Sum_probs=232.1
Q ss_pred cccccc-ccccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 172 YTSQEI-QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 172 ~~~~~l-~~H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
.+.+.+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+.....
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-------------------------------- 100 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-------------------------------- 100 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC--------------------------------
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc--------------------------------
Confidence 445566 89999999999999 99999999999999999987511000
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC---CCeeeEeec-------------CCCCeE
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---CNQCLNVFD-------------HHNYVT 312 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~---~~~~~~~~~-------------~~~~v~ 312 (626)
.......+ +|...|++++|+|++ +|++++.|++|++||+. +++....+. +...+.
T Consensus 101 -------~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 172 (437)
T 3gre_A 101 -------VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV 172 (437)
T ss_dssp -------CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE
T ss_pred -------ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce
Confidence 01112222 599999999999987 89999999999999995 454443321 556777
Q ss_pred EEE--EeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-ecc--CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909 313 CVQ--FNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 387 (626)
Q Consensus 313 ~~~--~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~--~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~ 387 (626)
++. ++| ++.+|++|+.|+.|++||+++++.+. +.. |...|++++|+|++++|++|+.||.|++||++......
T Consensus 173 ~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~- 250 (437)
T 3gre_A 173 RMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR- 250 (437)
T ss_dssp EEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE-
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE-
Confidence 777 456 78999999999999999999887665 334 78999999999999999999999999999999865432
Q ss_pred EEeeccccccCCCCeEEEEEcC----CCCcEEEEEeCCCcEEEEeCCcce--eeeeec----------------------
Q 006909 388 KVDFHDRKKTSGNKITGIQFSR----DESQRIMITSEDSKLRILDGVDVI--HKFKGL---------------------- 439 (626)
Q Consensus 388 ~~~~~~~~~~~~~~i~~l~~s~----~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~---------------------- 439 (626)
.+.. .+...|++++|+| ++ .+|++++.|+.|++||+.+.. ..+..+
T Consensus 251 ~~~~-----~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 251 SWSF-----GDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp EEBC-----TTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred EEec-----CCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence 2221 2236899997765 44 699999999999999987433 333321
Q ss_pred --CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCc
Q 006909 440 --PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL 517 (626)
Q Consensus 440 --~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~ 517 (626)
.|...|.+++|+ ++++|++|+.|+.|++||+.++.......... ..........+++....+...... .
T Consensus 325 ~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~ 395 (437)
T 3gre_A 325 GIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS-------RFSDVFIPTQVTANLTMLLRKMKR-T 395 (437)
T ss_dssp CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC---------CCCEEEEEEEETTEEEEEEECC---
T ss_pred ccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc-------ccCceEEEEEeecceEEEEEeccc-c
Confidence 155668999999 78999999999999999999863221110000 011122233333333332221000 0
Q ss_pred cccCccccccCCCCcccCCCcccCCccccCC--CCcccccCCCCCCCCCCC
Q 006909 518 RDCSQKWDNLETAPWIRDSERFSLGSWFSND--GPCRGSATWPAEKLPLWD 566 (626)
Q Consensus 518 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~s~~~~d~~i~vwd 566 (626)
+. ........|...|.+++|+++ +.++++++. +|.|++|+
T Consensus 396 ------~~--~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~-dG~I~iw~ 437 (437)
T 3gre_A 396 ------ST--HSVDDSLYHHDIINSISTCEVDETPLLVACDN-SGLIGIFQ 437 (437)
T ss_dssp -------------------CCCEEEEEEEESSSSEEEEEEET-TSCEEEEC
T ss_pred ------cc--cccCcccccccceeeEeeeccCCceEEEEEcC-CceEEEeC
Confidence 00 011223447778999999998 778999988 79999995
No 67
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.3e-32 Score=276.74 Aligned_cols=255 Identities=18% Similarity=0.275 Sum_probs=210.2
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
+.+.+.+|++.|++++|+|++++||+|+.||.|+|||+.++...
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------------------------------------ 46 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN------------------------------------ 46 (351)
T ss_dssp CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC------------------------------------
T ss_pred ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc------------------------------------
Confidence 34567899999999999999999999999999999999863210
Q ss_pred cccccCCCceeeccCccceEEEEEcC--CC-eEEEEeCCCcEEEeccCCC---------eeeEee-cCCCCeEEEEEeeC
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCN---------QCLNVF-DHHNYVTCVQFNPI 319 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~--~~-~l~s~s~d~~v~iwd~~~~---------~~~~~~-~~~~~v~~~~~~p~ 319 (626)
......+.+|...|++++|+| ++ +|++++.|++|++||+.++ +.+..+ .|...|.+++|+|
T Consensus 47 -----~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 120 (351)
T 3f3f_A 47 -----WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP- 120 (351)
T ss_dssp -----EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-
T ss_pred -----ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-
Confidence 123567789999999999998 35 9999999999999999876 445555 4889999999999
Q ss_pred C--CCEEEEEeCCCcEEEEeCCCCeEEE--------------eccCCCCeEEEEEeeC---CCEEEEEecCCcEEEEEcC
Q 006909 320 D--DNYFISGSIDGKVRIWGVCEKRVVD--------------WADVRDVISAICYIPD---GKGFIVGSITGTCHFYKAS 380 (626)
Q Consensus 320 ~--~~~l~s~s~dg~v~iwd~~~~~~~~--------------~~~~~~~i~~i~~sp~---g~~l~~g~~dg~i~i~d~~ 380 (626)
+ +++|++++.||.|++||+++++... ...+...+.+++|+|+ +..+++++.++.+.+|+..
T Consensus 121 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~ 200 (351)
T 3f3f_A 121 AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK 200 (351)
T ss_dssp GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT
T ss_pred CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC
Confidence 7 9999999999999999998765322 1256788999999997 9999999999999888877
Q ss_pred CCceeeeEEeeccccccCCCCeEEEEEcCCCC---cEEEEEeCCCcEEEEeCCcc-------------------------
Q 006909 381 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDES---QRIMITSEDSKLRILDGVDV------------------------- 432 (626)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~---~~l~~~s~dg~i~iwd~~~~------------------------- 432 (626)
....... .. ...|...|++++|+|++. .+|++++.||.|++||+...
T Consensus 201 ~~~~~~~-~~----~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (351)
T 3f3f_A 201 DGKLHVA-AK----LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMD 275 (351)
T ss_dssp TSCEEEE-EE----CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------
T ss_pred CCceeee-ee----cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccc
Confidence 6654221 11 233568999999999963 68999999999999997642
Q ss_pred ---------------------eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 433 ---------------------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 433 ---------------------~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
........|...|.+++|+|++++|++++.||.|++|++.++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 276 AQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp ---------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 222333458889999999999999999999999999999875
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-32 Score=280.07 Aligned_cols=306 Identities=15% Similarity=0.178 Sum_probs=230.1
Q ss_pred ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909 261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~ 338 (626)
...+.+|...|++++|+|++ +|++++.|+.|++||+.+++.+..+. |...|.+++|+| ++++|++++.||.|++||+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEET
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEC
Confidence 45688999999999999987 89999999999999999999998885 899999999999 9999999999999999999
Q ss_pred CCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEEcCCCceeeeEEeecc----ccccCCC--CeEEEEE
Q 006909 339 CEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHD----RKKTSGN--KITGIQF 407 (626)
Q Consensus 339 ~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~----~~~~~~~--~i~~l~~ 407 (626)
.+++......+...+.+++|+|+++++++++.+ |.|++||+.............. ....+.. .+.+++|
T Consensus 104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 999888877799999999999999999999999 9999999987654222111110 0111223 8999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCcc
Q 006909 408 SRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 486 (626)
Q Consensus 408 s~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 486 (626)
+|++ .++++++.||.|++||+.. .........|...|.+++|+|++++|++++.|+.|++||+.++.....
T Consensus 184 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~------- 255 (369)
T 3zwl_B 184 STKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK------- 255 (369)
T ss_dssp CGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-------
T ss_pred cCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeee-------
Confidence 9997 7999999999999999876 444444455888999999999999999999999999999987532211
Q ss_pred ceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909 487 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD 566 (626)
Q Consensus 487 ~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd 566 (626)
+........++|+|++..++....+.... .|. ...... ...+++||
T Consensus 256 ----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~--------------------------~~~~~~-~~~i~~~d 301 (369)
T 3zwl_B 256 ----YETDCPLNTAVITPLKEFIILGGGQEAKD---VTT--------------------------TSANEG-KFEARFYH 301 (369)
T ss_dssp ----EECSSCEEEEEECSSSSEEEEEECCC-------------------------------------------CEEEEEE
T ss_pred ----ecCCCCceeEEecCCCceEEEeecCCCce---EEE--------------------------EecCCC-cceeEEEe
Confidence 12334455566666666555433321100 000 000000 23578888
Q ss_pred cccCCCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeeecC
Q 006909 567 VTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNYG 621 (626)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~g 621 (626)
..++ ........|...+ .++++ +|.+||||+.||+|++|+...
T Consensus 302 ~~~~-----------~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 302 KIFE-----------EEIGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp TTTC-----------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEECH
T ss_pred cCCC-----------cchhheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEECcc
Confidence 8876 2222233344444 34555 899999999999999999753
No 69
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=294.84 Aligned_cols=307 Identities=11% Similarity=0.059 Sum_probs=230.1
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
.-...|.+++|||||+++||++.|++|+ |...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~---------------------------------------------- 44 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKY---------------------------------------------- 44 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECC----------------------------------------------
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccc----------------------------------------------
Confidence 4457899999999999999999999999 6433
Q ss_pred CCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909 259 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~ 338 (626)
...+.+|...|.+++|+|+| .++++.+|+.... .+..+.|...|.+++|+| +|..|++++.||.|++||.
T Consensus 45 --~~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~-~~~~~~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~ 114 (588)
T 2j04_A 45 --AKDINCNSKNLFHVKEFPLE------FENKLDFELAQQN-GLLNSQPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKD 114 (588)
T ss_dssp --CSCCSSBGGGTEEEEEECCC------CCCTTTTSCCCSS-CSSTTSCSCCEEEEEECS-SSSCEEEEETTSCEEEEET
T ss_pred --cceecCCCccEEEEEECCCC------CcceEEEEeCCCc-eEeecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeC
Confidence 12336899999999999998 4555555554322 233445788999999999 9999999999999999996
Q ss_pred CCCeEEEeccCCC-----CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee----eEEeeccccccCCCCeEEEEEcC
Q 006909 339 CEKRVVDWADVRD-----VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL----EKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 339 ~~~~~~~~~~~~~-----~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
.+ +.....|.. .+.+++|+|+|++|++|+.||+|++||+.++.... ....+..+..+|...|.+++|+|
T Consensus 115 ~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP 192 (588)
T 2j04_A 115 NK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE 192 (588)
T ss_dssp TE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET
T ss_pred Cc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC
Confidence 54 333333544 49999999999999999999999999999875300 11122222344678999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCccee-----eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCC-CCCCccC
Q 006909 410 DESQRIMITSEDSKLRILDGVDVIH-----KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF-PSSKQKN 483 (626)
Q Consensus 410 ~~~~~l~~~s~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~ 483 (626)
+| +++++.|++|++||+..... .+. ..|...|.+++|+ |++||+++ +++|++||+.++.. .......
T Consensus 193 dg---Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~ 265 (588)
T 2j04_A 193 DV---LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSL 265 (588)
T ss_dssp TE---EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCC
T ss_pred Cc---EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCC
Confidence 95 88999999999999864332 232 2477899999999 68999997 69999999998744 3331233
Q ss_pred Cccceeee--ccCCcEEEEec--------------CCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccC
Q 006909 484 SVRSCEHF--FSEGVSVAVQW--------------PGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSN 547 (626)
Q Consensus 484 ~~~~~~~~--~~~g~~~av~~--------------s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~ 547 (626)
.....+.| +|++..+++++ +|++..++.. ++.+.+|...........+...+.+++|||
T Consensus 266 ~~V~~va~~~s~d~~~La~a~edG~klw~~d~~~~spd~~l~a~~-----d~~v~lW~~~g~~l~~~~~~~~I~~va~SP 340 (588)
T 2j04_A 266 ENFHIIPLNHEKESTILLMSNKTSYKVLLEDELHVTADNIIAPYL-----EKKFKKWSTIWNEFNNYETTLVIHGISLSP 340 (588)
T ss_dssp SCCCEEEETTCSSCEEEEECSSCEEEEEESSSEEEECCCSSHHHH-----HHHHHHTTTTTTSSSSSCCEEEEEEEEECT
T ss_pred ceEEEEEeeeCCCCCEEEEEcCCCCEEEeeccEEECCCceEEEEc-----CCEEEEEECCCCceeeeccceEEEEEEECC
Confidence 34455688 99999999988 5666555543 456777876333322233344589999999
Q ss_pred CCCcccccCC
Q 006909 548 DGPCRGSATW 557 (626)
Q Consensus 548 dg~~l~s~~~ 557 (626)
||+.+|+++.
T Consensus 341 dG~~lA~~~~ 350 (588)
T 2j04_A 341 DGYSIAIVYD 350 (588)
T ss_dssp TSSEEEEEEE
T ss_pred CCCEEEEEEe
Confidence 9999998775
No 70
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-33 Score=294.95 Aligned_cols=281 Identities=10% Similarity=0.073 Sum_probs=210.9
Q ss_pred ccccCCCceee-ccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCC---Ce---eeEeecCCCCeEEEEEeeCCCCEE
Q 006909 254 FQIEESPLQEL-HGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGC---NQ---CLNVFDHHNYVTCVQFNPIDDNYF 324 (626)
Q Consensus 254 ~~~~~~~~~~~-~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~---~~---~~~~~~~~~~v~~~~~~p~~~~~l 324 (626)
|...+..+..+ .+|.+.|++++|+| ++ +|++|+.|++|++||+.+ +. ....+.|...|.+++|+| ++++|
T Consensus 48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l 126 (437)
T 3gre_A 48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAF 126 (437)
T ss_dssp GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT-TSSEE
T ss_pred ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC-CCCEE
Confidence 34446677888 89999999999999 77 999999999999999976 33 345557999999999999 99999
Q ss_pred EEEeCCCcEEEEeCC---CCeEEEe-----------cc--CCCCeEEEE--EeeCCCEEEEEecCCcEEEEEcCCCceee
Q 006909 325 ISGSIDGKVRIWGVC---EKRVVDW-----------AD--VRDVISAIC--YIPDGKGFIVGSITGTCHFYKASGNDLKL 386 (626)
Q Consensus 325 ~s~s~dg~v~iwd~~---~~~~~~~-----------~~--~~~~i~~i~--~sp~g~~l~~g~~dg~i~i~d~~~~~~~~ 386 (626)
++|+.||+|++||+. .++.... .. +...+.++. ++|++.+|++|+.||.|++||+++.....
T Consensus 127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 999999999999994 3333221 12 556677777 55789999999999999999998876543
Q ss_pred eEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeee-cCCCCCeEEEEEc----CCCCEEEEEe
Q 006909 387 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFT----TTGKHIISIG 461 (626)
Q Consensus 387 ~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s----p~g~~l~s~s 461 (626)
. +..+ .|...|++++|+|++ .+|++++.||.|++||++........ ..+...|.+++|+ |++.+|++++
T Consensus 207 ~-~~~~----~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~ 280 (437)
T 3gre_A 207 I-IENS----PRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS 280 (437)
T ss_dssp E-EECC----GGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred E-EccC----CCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc
Confidence 2 2221 134799999999997 79999999999999998865544433 2467789999665 5688999999
Q ss_pred CCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccC
Q 006909 462 DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSL 541 (626)
Q Consensus 462 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 541 (626)
.||.|++||+.++...... ..+.+....+.|+|++..+.... +. -..+...+.
T Consensus 281 ~dg~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~-------------~~----~~~~~~~v~ 333 (437)
T 3gre_A 281 SKTFLTIWNFVKGHCQYAF----------INSDEQPSMEHFLPIEKGLEELN-------------FC----GIRSLNALS 333 (437)
T ss_dssp TTEEEEEEETTTTEEEEEE----------ESSSSCCCGGGGSCBCSSGGGCC-------------CC----CCCSGGGGC
T ss_pred CCCcEEEEEcCCCcEEEEE----------EcCCCCCccceecccccccccce-------------ec----ccccCCceE
Confidence 9999999999875211100 01122233345556555442111 00 122566799
Q ss_pred CccccCCCCcccccCCCCCCCCCCCcccC
Q 006909 542 GSWFSNDGPCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 542 ~~~~s~dg~~l~s~~~~d~~i~vwd~~~~ 570 (626)
.++|+ +++++++++. |+.|++||+.++
T Consensus 334 ~l~~~-~~~~l~s~~~-d~~i~~wd~~~~ 360 (437)
T 3gre_A 334 TISVS-NDKILLTDEA-TSSIVMFSLNEL 360 (437)
T ss_dssp CEEEE-TTEEEEEEGG-GTEEEEEETTCG
T ss_pred EEEEC-CceEEEecCC-CCeEEEEECCCc
Confidence 99999 8888999988 799999999877
No 71
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-33 Score=311.89 Aligned_cols=254 Identities=20% Similarity=0.298 Sum_probs=209.8
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
.+.+.+|.+.|++++|+|+|++|++|+.||+|+|||+.+..
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~--------------------------------------- 42 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--------------------------------------- 42 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE---------------------------------------
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC---------------------------------------
Confidence 45678999999999999999999999999999999987421
Q ss_pred ccccCCCceeeccCccceEEEEEcCC--C-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEeeCC--CCEEE
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFI 325 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~--~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p~~--~~~l~ 325 (626)
...+..+.+|.+.|++++|+|+ + +|++|+.||+|++||+.+++ .+..+ .|...|++++|+| + +++++
T Consensus 43 ----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~ 117 (753)
T 3jro_A 43 ----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLL 117 (753)
T ss_dssp ----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEE
T ss_pred ----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEE
Confidence 2346678899999999999876 5 89999999999999999886 44444 4889999999999 7 99999
Q ss_pred EEeCCCcEEEEeCCCC---eEEEeccCCCCeEEEEEee-------------CCCEEEEEecCCcEEEEEcCCCceeeeEE
Q 006909 326 SGSIDGKVRIWGVCEK---RVVDWADVRDVISAICYIP-------------DGKGFIVGSITGTCHFYKASGNDLKLEKV 389 (626)
Q Consensus 326 s~s~dg~v~iwd~~~~---~~~~~~~~~~~i~~i~~sp-------------~g~~l~~g~~dg~i~i~d~~~~~~~~~~~ 389 (626)
+|+.||.|++||++++ .......|...|.+++|+| ++..+++|+.||.|++||+++........
T Consensus 118 sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 197 (753)
T 3jro_A 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197 (753)
T ss_dssp EEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred EEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence 9999999999999876 3445678899999999999 58999999999999999998775432211
Q ss_pred eeccccccCCCCeEEEEEcCCC--CcEEEEEeCCCcEEEEeCCcce-----eeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 006909 390 DFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDVI-----HKFKGLPKSGSQMSASFTTTGKHIISIGD 462 (626)
Q Consensus 390 ~~~~~~~~~~~~i~~l~~s~~~--~~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~sp~g~~l~s~s~ 462 (626)
. ....|...|++++|+|++ +.++++++.||.|++||..... .......+...|.+++|+|+|++|++++.
T Consensus 198 ~---~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 274 (753)
T 3jro_A 198 S---TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (753)
T ss_dssp E---EECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred e---eecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence 1 123456899999999993 3899999999999999977532 22333457889999999999999999999
Q ss_pred CccEEEEECCCC
Q 006909 463 DCRVYVWNYDEL 474 (626)
Q Consensus 463 dg~I~iwd~~~~ 474 (626)
||.|++|++...
T Consensus 275 Dg~I~vwd~~~~ 286 (753)
T 3jro_A 275 DNKVTLWKENLE 286 (753)
T ss_dssp SSCEECCBCCSS
T ss_pred CCEEEEEecCCC
Confidence 999999999864
No 72
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.5e-32 Score=281.94 Aligned_cols=294 Identities=13% Similarity=0.138 Sum_probs=233.4
Q ss_pred CCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKV 333 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~s~dg~v 333 (626)
.....+.+|...|++++|+|++ +|++|+.|+.|++||+.+++....+. |...|.+++|+|.++++|++++.|+.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 3456788999999999999986 89999999999999999888777663 899999999999557899999999999
Q ss_pred EEEeCCCCeEEEeccC---CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 334 RIWGVCEKRVVDWADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 334 ~iwd~~~~~~~~~~~~---~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
++||+.+.....+..+ ...|.+++|+|++++|++|+.||.|++||++... ...+. .|...|.+++|+|+
T Consensus 144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~------~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHE--IFKEK------LHKAKVTHAEFNPR 215 (383)
T ss_dssp EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCE--EEEEE------CSSSCEEEEEECSS
T ss_pred EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCE--EEEec------cCCCcEEEEEECCC
Confidence 9999998766655444 4789999999999999999999999999995332 22222 34589999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCc----ceeeeeecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCCCCCCCCC--c--
Q 006909 411 ESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSK--Q-- 481 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~--~-- 481 (626)
+..++++++.|+.|++||+.+ .... ....|...|.+++|+| ++++|++++.|+.|++||+.++...... +
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 294 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKNSYI-AEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH 294 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTTCEE-EEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcccceE-EEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence 854999999999999999875 2222 2224889999999999 9999999999999999999876332111 1
Q ss_pred ----cCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCC--cccC--CCcccCCccccCCCCccc
Q 006909 482 ----KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP--WIRD--SERFSLGSWFSNDGPCRG 553 (626)
Q Consensus 482 ----~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~--~~~~--~~~~~~~~~~s~dg~~l~ 553 (626)
...... ..|+|++..++++++|++.. ..+.++.+.+|+...... .+.. +...+..++|+|||++++
T Consensus 295 ~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~-----s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~ 368 (383)
T 3ei3_B 295 RQFQHLTPIK-ATWHPMYDLIVAGRYPDDQL-----LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLA 368 (383)
T ss_dssp CCCTTSCCCC-CEECSSSSEEEEECBCCTTT-----CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEE
T ss_pred cccccccceE-EeccCCCCceEEEecCCccc-----ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEE
Confidence 111222 37899999999999999987 333556788888755433 2222 344566669999999999
Q ss_pred ccCCCCCCCCCCCccc
Q 006909 554 SATWPAEKLPLWDVTI 569 (626)
Q Consensus 554 s~~~~d~~i~vwd~~~ 569 (626)
+++ |+.|++||+.+
T Consensus 369 s~s--d~~i~iw~~~~ 382 (383)
T 3ei3_B 369 SGM--GFNILIWNRED 382 (383)
T ss_dssp EEE--TTEEEEEECC-
T ss_pred Eec--CCcEEEEecCC
Confidence 985 79999999864
No 73
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.8e-32 Score=275.45 Aligned_cols=293 Identities=18% Similarity=0.288 Sum_probs=215.8
Q ss_pred ceeeccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCe-----eeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 261 LQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQ-----CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~-----~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
..+|.||.+.|++|+|+|+ + +|+||+.|++|+|||+.+.+ +...+ .|...|.+++|+| ++++|++++.|+.
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~ 109 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGT 109 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC-CCCEEEEEccccc
Confidence 4578999999999999997 4 89999999999999997653 34444 4899999999999 9999999999999
Q ss_pred EEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 333 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 333 v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
|++|+........ ...+...+..+.++++++.|++++.|+.+++||+........ ....|...+..++|++++
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~------~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV------QDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE------CSSSCSSCEEEEEECSCS
T ss_pred ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE------EeccccCcccceEEccCC
Confidence 9999998876554 556677888999999999999999999999999876544322 123445889999999875
Q ss_pred C-cEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceee
Q 006909 412 S-QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH 490 (626)
Q Consensus 412 ~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 490 (626)
. .++++++.|+.|++||..+.........|...|.+++|+|++++|++|+.|+.|++||+.+.... ..
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~-----------~~ 252 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-----------YT 252 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-----------EE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee-----------ee
Confidence 3 46788999999999999876666666668999999999999999999999999999999864110 01
Q ss_pred eccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909 491 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 491 ~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~ 570 (626)
+..... +..++|+|++.+++++ . ++.|++||+..+
T Consensus 253 ~~~~~~-------------------------------------------v~~~~~~~~~~~~~~~-~-d~~i~iwd~~~~ 287 (340)
T 4aow_A 253 LDGGDI-------------------------------------------INALCFSPNRYWLCAA-T-GPSIKIWDLEGK 287 (340)
T ss_dssp EECSSC-------------------------------------------EEEEEECSSSSEEEEE-E-TTEEEEEETTTT
T ss_pred ecCCce-------------------------------------------EEeeecCCCCceeecc-C-CCEEEEEECCCC
Confidence 111111 3334455555444333 3 567777877654
Q ss_pred CCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeee
Q 006909 571 SDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHN 619 (626)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~ 619 (626)
.. ...............+...+ .++++ ||++|||||.||+|+||++
T Consensus 288 ~~--~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 288 II--VDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp EE--EEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEE
T ss_pred eE--EEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeC
Confidence 10 00000000111122233333 34556 8999999999999999995
No 74
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.4e-32 Score=276.61 Aligned_cols=203 Identities=10% Similarity=0.034 Sum_probs=166.3
Q ss_pred cCccceEEEEEcCCC-eEE--EEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe
Q 006909 266 GHKGDVLDLAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 342 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~-~l~--s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~ 342 (626)
.+...+.+++|+||| +++ +++.|++|+|||+.+++++..+.|...|.+++|+| +++++++++.++ +++|+..++.
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~~-~~~~~~~~~~ 208 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGSS-LEVISTVTGS 208 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSSC-EEEEETTTCC
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEecccee-EEEEEeccCc
Confidence 455678999999998 554 45579999999999999999999999999999999 999999998654 5666665555
Q ss_pred EEE---eccCCCCeEEEEEeeCCCEEEEEecCC----cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 343 VVD---WADVRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 343 ~~~---~~~~~~~i~~i~~sp~g~~l~~g~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
... ...|...|.+++|+|+++.+++++.++ .+++|++........... ....|...|++++|+|+| ++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~V~~~~~Spdg-~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSK---QVTNRFKGITSMDVDMKG-ELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEE---EEESSCSCEEEEEECTTS-CEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeee---eecCCCCCeEeEEECCCC-Cce
Confidence 432 345778899999999999999999887 688899877654332111 122345789999999998 799
Q ss_pred EEEeCCCcEEEEeCCcceeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 416 MITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 416 ~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
++|+.|++|+|||+.+....... ..|...|++++|+|||++|++||.|++|+||++...
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999876555443 458999999999999999999999999999999765
No 75
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=275.27 Aligned_cols=293 Identities=17% Similarity=0.273 Sum_probs=226.4
Q ss_pred ccccccccccccCcEEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCce
Q 006909 170 ALYTSQEIQAHKGCIWTLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 246 (626)
Q Consensus 170 ~~~~~~~l~~H~~~V~~l~fspd---g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (626)
.....+.+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+..
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-------------------------------- 75 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-------------------------------- 75 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--------------------------------
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--------------------------------
Confidence 34456678899999999999999 6999999999999999998621
Q ss_pred eecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEE--eeCCCCE
Q 006909 247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF--NPIDDNY 323 (626)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~--~p~~~~~ 323 (626)
......+.+|...|++++|+|++ +|++++.|+.|++||+.+++.+....|...|.+++| +| ++++
T Consensus 76 -----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 143 (368)
T 3mmy_A 76 -----------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAP-NYSC 143 (368)
T ss_dssp -----------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECS-SCEE
T ss_pred -----------ceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCC-CCCE
Confidence 11236677899999999999987 899999999999999999999988889999999999 77 8889
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909 324 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~ 403 (626)
|++++.||.|++||+++++..........+.++.+. +..+++++.++.+++|++............ .....+.
T Consensus 144 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~ 216 (368)
T 3mmy_A 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIES-----PLKHQHR 216 (368)
T ss_dssp EEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCC-----SCSSCEE
T ss_pred EEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccc-----cccCCCc
Confidence 999999999999999988877666666666666655 458999999999999999876654432221 1224566
Q ss_pred EEEEcCCCC---cEEEEEeCCCcEEEEeCCcc-----eeeeeecCCCC------------CeEEEEEcCCCCEEEEEeCC
Q 006909 404 GIQFSRDES---QRIMITSEDSKLRILDGVDV-----IHKFKGLPKSG------------SQMSASFTTTGKHIISIGDD 463 (626)
Q Consensus 404 ~l~~s~~~~---~~l~~~s~dg~i~iwd~~~~-----~~~~~~~~~~~------------~v~~~~~sp~g~~l~s~s~d 463 (626)
++.+.++.. ..+++++.|+.|++||.... ...+.. |.. .|.+++|+|++++|++++.|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 294 (368)
T 3mmy_A 217 CVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD 294 (368)
T ss_dssp EEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETT
T ss_pred eEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee--eecccccccccccccceEEEEEecCCCEEEEEccC
Confidence 666665431 23999999999999998743 233333 333 79999999999999999999
Q ss_pred ccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCcccc
Q 006909 464 CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWD 525 (626)
Q Consensus 464 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~ 525 (626)
|.|++||+.++...... ..+.+.+.+++|+|++..++..+.+........|+
T Consensus 295 g~i~iwd~~~~~~~~~~----------~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 295 GRFSFWDKDARTKLKTS----------EQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp SCEEEEETTTTEEEEEC----------CCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred CeEEEEECCCCcEEEEe----------cCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 99999999876221110 11245567778888888777766655444344443
No 76
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-31 Score=266.53 Aligned_cols=284 Identities=15% Similarity=0.192 Sum_probs=222.8
Q ss_pred ccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCcee
Q 006909 168 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 247 (626)
Q Consensus 168 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (626)
+....+.+++.+|.+.|++++| |++++|++|+.||.|++||+.+
T Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~----------------------------------- 48 (313)
T 3odt_A 5 FTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD----------------------------------- 48 (313)
T ss_dssp CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS-----------------------------------
T ss_pred cccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC-----------------------------------
Confidence 3455677889999999999999 9999999999999999999976
Q ss_pred ecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC---eeeEee-cCCCCeEEEEEeeCCCC
Q 006909 248 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVF-DHHNYVTCVQFNPIDDN 322 (626)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~---~~~~~~-~~~~~v~~~~~~p~~~~ 322 (626)
......+..|...|.+++|+|++ +|++++.|+.|++|++... +.+..+ .|...|.+++| +++
T Consensus 49 ----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~ 115 (313)
T 3odt_A 49 ----------QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF---QDG 115 (313)
T ss_dssp ----------SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE---ETT
T ss_pred ----------CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe---cCC
Confidence 23356677899999999999987 8999999999999998654 444444 48899999999 467
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 323 YFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 323 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
++++++.||.|++|| ..........|...+.+++|+| +++.+++++.||.|++||... . ..... ..+...
T Consensus 116 ~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~-~~~~~-----~~~~~~ 186 (313)
T 3odt_A 116 VVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--V-IKTFS-----GIHNDV 186 (313)
T ss_dssp EEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--E-EEEEC-----SSCSSC
T ss_pred EEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--e-EEEEe-----ccCccc
Confidence 999999999999999 4445556778999999999999 999999999999999999332 1 11121 124578
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCc
Q 006909 402 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 481 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 481 (626)
+.+++|+|++ . +++++.|+.|++||+.+.........|...|.+++|+|++ .|++++.||.|++||+.++.....
T Consensus 187 i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~-- 261 (313)
T 3odt_A 187 VRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQV-- 261 (313)
T ss_dssp EEEEEEEETT-E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEE--
T ss_pred EEEEEEcCCC-e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEE--
Confidence 9999999997 4 9999999999999988655555555588999999999999 588999999999999987622111
Q ss_pred cCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccc
Q 006909 482 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 526 (626)
Q Consensus 482 ~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~ 526 (626)
...+.+.+.+++|+|++..+. .+ .++.+.+|+.
T Consensus 262 --------~~~~~~~i~~~~~~~~~~~~~-~~---~dg~i~iw~~ 294 (313)
T 3odt_A 262 --------ITLPAISIWSVDCMSNGDIIV-GS---SDNLVRIFSQ 294 (313)
T ss_dssp --------EECSSSCEEEEEECTTSCEEE-EE---TTSCEEEEES
T ss_pred --------EeccCceEEEEEEccCCCEEE-Ee---CCCcEEEEeC
Confidence 112234566677777766333 22 2334556665
No 77
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7e-32 Score=283.10 Aligned_cols=286 Identities=14% Similarity=0.138 Sum_probs=220.3
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
.+.+..| ..+....|+|++++||+|+.||.|++||+.+
T Consensus 91 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------------------------------- 128 (420)
T 3vl1_A 91 SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF----------------------------------------- 128 (420)
T ss_dssp TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS-----------------------------------------
T ss_pred eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC-----------------------------------------
Confidence 3445556 4555667899999999999999999999876
Q ss_pred ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
......+.+|...|++++|+|++ +|++++.|++|++||+.+++.+..+. |...|.+++|+| ++++|++++.|+
T Consensus 129 ----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~ 203 (420)
T 3vl1_A 129 ----NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDG 203 (420)
T ss_dssp ----CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTS
T ss_pred ----cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCC
Confidence 23355667899999999999987 89999999999999999998888875 899999999999 999999999999
Q ss_pred cEEEEeCCCCeEEEecc----CCCCeE---------------------EEEEeeCCCEEEEEecCCcEEEEEcCCCceee
Q 006909 332 KVRIWGVCEKRVVDWAD----VRDVIS---------------------AICYIPDGKGFIVGSITGTCHFYKASGNDLKL 386 (626)
Q Consensus 332 ~v~iwd~~~~~~~~~~~----~~~~i~---------------------~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~ 386 (626)
+|++||+++++...... +...+. +++|+|++++|++|+.||.|++||+++.....
T Consensus 204 ~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 283 (420)
T 3vl1_A 204 TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI 283 (420)
T ss_dssp CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE
T ss_pred cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE
Confidence 99999999887665432 334444 44557889999999999999999998876543
Q ss_pred eEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc---eeeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909 387 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDD 463 (626)
Q Consensus 387 ~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d 463 (626)
... ..+...|++++|+|++..+|++++.||.|++||+.+. ...+..+ +...+.++.+ +++++|++++.|
T Consensus 284 ~~~------~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~l~s~~~d 355 (420)
T 3vl1_A 284 QLP------SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTPINNVYF-AAGALFVSSGFD 355 (420)
T ss_dssp EEC------CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSCEEEEEE-ETTEEEEEETTT
T ss_pred Ecc------cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCCceEEEe-CCCCEEEEecCC
Confidence 321 2345789999999998549999999999999998754 3444443 5667887755 578899999999
Q ss_pred ccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCc---ccccccCC
Q 006909 464 CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT---EQKSLCSS 515 (626)
Q Consensus 464 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~---~l~~~~~~ 515 (626)
+.|++|++.....+........ ........+.+..++|+|++. .++....+
T Consensus 356 ~~v~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~ 409 (420)
T 3vl1_A 356 TSIKLDIISDPESERPAIEFET-PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN 409 (420)
T ss_dssp EEEEEEEECCTTCCSCEECTTS-CEEECCSSCCCCEEEEECCSSSSCEEEEEETT
T ss_pred ccEEEEeccCCCCCccceeccC-ccEEccCCcceEEEEEccCCCCcceEEEEcCC
Confidence 9999999987533222111111 111223455666778888877 45554443
No 78
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.2e-31 Score=276.17 Aligned_cols=206 Identities=17% Similarity=0.230 Sum_probs=174.1
Q ss_pred eccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909 264 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 339 (626)
Q Consensus 264 ~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~ 339 (626)
+..|..+|++++|+|++ +|++++.|+.|++||+.+++ .+..+ .|...|.+++|+| ++++|++++.||.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECC
Confidence 44589999999999998 88999999999999999887 66666 4899999999999 99999999999999999998
Q ss_pred CCeEE---EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909 340 EKRVV---DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 416 (626)
Q Consensus 340 ~~~~~---~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~ 416 (626)
+++.. ....+...|.+++|+|++++|++++.||.|++||+............ ...|...|++++|+|++ .+|+
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~-~~l~ 158 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI---KKPIRSTVLSLDWHPNS-VLLA 158 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE---CTTCCSCEEEEEECTTS-SEEE
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee---ecccCCCeeEEEEcCCC-CEEE
Confidence 87733 34678899999999999999999999999999999877632211111 22345899999999997 7999
Q ss_pred EEeCCCcEEEEeCC------------------cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 417 ITSEDSKLRILDGV------------------DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 417 ~~s~dg~i~iwd~~------------------~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+++.|+.|++||+. ..........|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred EEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999999999953 22233333457889999999999999999999999999999865
No 79
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-31 Score=272.81 Aligned_cols=247 Identities=15% Similarity=0.141 Sum_probs=205.7
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
...+|.+.|++++|+|++++|++|+.||.|+||++.++..
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~---------------------------------------- 45 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK---------------------------------------- 45 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----------------------------------------
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc----------------------------------------
Confidence 3458999999999999999999999999999999986321
Q ss_pred ccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEecc-CCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCC
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQV-GCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID 330 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~-~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d 330 (626)
..+...+.+|...|.+++|+|++ +|++++.|+.|++||+ .+++...... |...|.+++|+| +++|++++.|
T Consensus 46 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d 121 (342)
T 1yfq_A 46 --NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG--DDKLIAASWD 121 (342)
T ss_dssp --EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET--TTEEEEEETT
T ss_pred --cccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC--CCEEEEEcCC
Confidence 01234555899999999999875 5999999999999999 8887765557 999999999998 8899999999
Q ss_pred CcEEEEeCCC---------CeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC-CceeeeEEeeccccccCCC
Q 006909 331 GKVRIWGVCE---------KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-NDLKLEKVDFHDRKKTSGN 400 (626)
Q Consensus 331 g~v~iwd~~~---------~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~ 400 (626)
+.|++||+++ ++......+...|.+++|+|++ +++++.++.|++||+++ ......... ..+..
T Consensus 122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~ 194 (342)
T 1yfq_A 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEE-----SGLKY 194 (342)
T ss_dssp SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEE-----CSCSS
T ss_pred CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeee-----cCCCC
Confidence 9999999987 6666666688999999999987 99999999999999987 543322221 12347
Q ss_pred CeEEEEEcC-CCCcEEEEEeCCCcEEEEeCCcc--------eeeeeecC-------CCCCeEEEEEcCCCCEEEEEeCCc
Q 006909 401 KITGIQFSR-DESQRIMITSEDSKLRILDGVDV--------IHKFKGLP-------KSGSQMSASFTTTGKHIISIGDDC 464 (626)
Q Consensus 401 ~i~~l~~s~-~~~~~l~~~s~dg~i~iwd~~~~--------~~~~~~~~-------~~~~v~~~~~sp~g~~l~s~s~dg 464 (626)
.+.+++|+| ++ .++++++.||.|++|+.... ...+..+. |...|.+++|+|++++|++++.||
T Consensus 195 ~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 273 (342)
T 1yfq_A 195 QIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG 273 (342)
T ss_dssp CEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred ceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc
Confidence 899999999 87 79999999999999997533 33444421 234999999999999999999999
Q ss_pred cEEEEECCCC
Q 006909 465 RVYVWNYDEL 474 (626)
Q Consensus 465 ~I~iwd~~~~ 474 (626)
.|++||+.++
T Consensus 274 ~i~vwd~~~~ 283 (342)
T 1yfq_A 274 IISCWNLQTR 283 (342)
T ss_dssp CEEEEETTTT
T ss_pred eEEEEcCccH
Confidence 9999999876
No 80
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-31 Score=278.27 Aligned_cols=289 Identities=15% Similarity=0.242 Sum_probs=226.7
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
.+|.+.|++++|+|++++|++|+.||.|++||..
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~---------------------------------------------- 138 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT---------------------------------------------- 138 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEETT----------------------------------------------
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC----------------------------------------------
Confidence 3579999999999999999999999999999933
Q ss_pred CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCC---------------eEEEEEeeCC
Q 006909 258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY---------------VTCVQFNPID 320 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~---------------v~~~~~~p~~ 320 (626)
...+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+. +... +.+++|+| +
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 217 (425)
T 1r5m_A 139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D 217 (425)
T ss_dssp SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE-T
T ss_pred CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-C
Confidence 34466778899999999999987 89999999999999999999888875 3334 89999998 5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCC
Q 006909 321 DNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 399 (626)
Q Consensus 321 ~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 399 (626)
..+++++.+|.|++||+.+++.. .+..|...|.+++|+|++++|++++.||.|++||+.+...... + ..+.
T Consensus 218 -~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~------~~~~ 289 (425)
T 1r5m_A 218 -DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC-F------YGHS 289 (425)
T ss_dssp -TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE-E------CCCS
T ss_pred -CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE-e------cCCC
Confidence 56899999999999999987654 4567889999999999999999999999999999987654322 1 2245
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCC
Q 006909 400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS 479 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~ 479 (626)
..|.+++|+|++ ++++++.|+.|++||+.+.........|...+.+++|+|++++|++++.||.|++||+.+...+..
T Consensus 290 ~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 367 (425)
T 1r5m_A 290 QSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR 367 (425)
T ss_dssp SCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---
T ss_pred ccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcccee
Confidence 789999999996 899999999999999886655555555788999999999999999999999999999986531110
Q ss_pred Cc---cC--------CccceeeeccCC-cEEEEecCCCCcccccccCCCccccCccccc
Q 006909 480 KQ---KN--------SVRSCEHFFSEG-VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 526 (626)
Q Consensus 480 ~~---~~--------~~~~~~~~~~~g-~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~ 526 (626)
.. .. ........+..+ .+..++|+|++..++....+ +.+.+|+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~ 423 (425)
T 1r5m_A 368 SLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL---QEGSVVAI 423 (425)
T ss_dssp -----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS---SCCEEEEC
T ss_pred eeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC---ceEEEEee
Confidence 00 00 011111112223 77888899988887765554 33555543
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-31 Score=278.60 Aligned_cols=283 Identities=16% Similarity=0.209 Sum_probs=224.4
Q ss_pred ccccCc--EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 178 QAHKGC--IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 178 ~~H~~~--V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
.+|... +.+++|++ ..+++++.||.|++|++.++..
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~---------------------------------------- 125 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSV---------------------------------------- 125 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCE----------------------------------------
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcE----------------------------------------
Confidence 466665 44566654 5688888999999999987432
Q ss_pred ccCCCceeec-cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 256 IEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 256 ~~~~~~~~~~-~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
...+. .|...|.+++|+|++ +|++|+.||.|++||+.+++.+..+ .|...|.+++|+ +++|++|+.||.
T Consensus 126 -----~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~ 197 (401)
T 4aez_A 126 -----SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGA 197 (401)
T ss_dssp -----EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE---TTEEEEEETTSE
T ss_pred -----eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC---CCEEEEEcCCCC
Confidence 22333 388999999999987 8999999999999999999988888 488999999994 579999999999
Q ss_pred EEEEeCCC-C-eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 333 VRIWGVCE-K-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 333 v~iwd~~~-~-~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
|++||++. + ....+..|...|.+++|+|++++|++|+.||.|++||+.+...... + ..|...|.+++|+|+
T Consensus 198 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~------~~~~~~v~~~~~~p~ 270 (401)
T 4aez_A 198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT-K------TNHNAAVKAVAWCPW 270 (401)
T ss_dssp EEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE-E------CCCSSCCCEEEECTT
T ss_pred EEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE-e------cCCcceEEEEEECCC
Confidence 99999983 3 3455778999999999999999999999999999999987654322 1 224578999999998
Q ss_pred CCcEEEEEe--CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEE--eCCccEEEEECCCCCCCCCCccCCcc
Q 006909 411 ESQRIMITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI--GDDCRVYVWNYDELCFPSSKQKNSVR 486 (626)
Q Consensus 411 ~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~--s~dg~I~iwd~~~~~~~~~~~~~~~~ 486 (626)
+..++++++ .|+.|++||+.+....... .+...+.+++|+|++++|+++ +.||.|++|++.++.
T Consensus 271 ~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~----------- 338 (401)
T 4aez_A 271 QSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG----------- 338 (401)
T ss_dssp STTEEEEECCTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-----------
T ss_pred CCCEEEEecCCCCCEEEEEECCCCCEEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-----------
Confidence 877888876 7999999998755443333 256789999999999999995 489999999987631
Q ss_pred ceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909 487 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD 566 (626)
Q Consensus 487 ~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd 566 (626)
...+. ....+...+..++|+|||+++++++. |+.|++|+
T Consensus 339 ----------~~~~~------------------------------~~~~h~~~v~~~~~s~dg~~l~s~~~-dg~i~iw~ 377 (401)
T 4aez_A 339 ----------LTKQV------------------------------DIPAHDTRVLYSALSPDGRILSTAAS-DENLKFWR 377 (401)
T ss_dssp ----------EEEEE------------------------------EEECCSSCCCEEEECTTSSEEEEECT-TSEEEEEE
T ss_pred ----------ceeEE------------------------------EecCCCCCEEEEEECCCCCEEEEEeC-CCcEEEEE
Confidence 00000 01123345778889999999999988 79999999
Q ss_pred cccC
Q 006909 567 VTID 570 (626)
Q Consensus 567 ~~~~ 570 (626)
+.++
T Consensus 378 ~~~~ 381 (401)
T 4aez_A 378 VYDG 381 (401)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 9887
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.4e-31 Score=294.88 Aligned_cols=244 Identities=22% Similarity=0.384 Sum_probs=200.6
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
.+.+.+|.+.|++++|+|+|++|++|+.||+|+|||+.++
T Consensus 423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~---------------------------------------- 462 (694)
T 3dm0_A 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG---------------------------------------- 462 (694)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----------------------------------------
T ss_pred cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC----------------------------------------
Confidence 4568899999999999999999999999999999999873
Q ss_pred ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee----cCCCCeEEEEEeeCCC--CEEEE
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDD--NYFIS 326 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~~p~~~--~~l~s 326 (626)
.....+.+|...|.+++|+|++ +|++|+.|++|++||+......... .|...|.+++|+| ++ ..+++
T Consensus 463 -----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s 536 (694)
T 3dm0_A 463 -----VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVS 536 (694)
T ss_dssp -----EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEE
T ss_pred -----cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEE
Confidence 3456788999999999999987 8999999999999998765444332 3788999999999 65 68999
Q ss_pred EeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909 327 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 327 ~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 405 (626)
|+.|++|++||++++++.. +..|...|++++|+|+|++|++|+.||.|++||+.+.+.... +. +...|.++
T Consensus 537 ~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~---~~-----~~~~v~~~ 608 (694)
T 3dm0_A 537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS---LE-----ANSVIHAL 608 (694)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC---CB-----CSSCEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE---ec-----CCCcEEEE
Confidence 9999999999999877654 667999999999999999999999999999999988765322 11 13679999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeec-------------------CCCCCeEEEEEcCCCCEEEEEeCCccE
Q 006909 406 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL-------------------PKSGSQMSASFTTTGKHIISIGDDCRV 466 (626)
Q Consensus 406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-------------------~~~~~v~~~~~sp~g~~l~s~s~dg~I 466 (626)
+|+|++ .++++ +.++.|+|||+.+........ .+...+++++|+|+|++|++|+.||+|
T Consensus 609 ~~sp~~-~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i 686 (694)
T 3dm0_A 609 CFSPNR-YWLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVI 686 (694)
T ss_dssp EECSSS-SEEEE-EETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEcCCC-cEEEE-EcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeE
Confidence 999996 45544 556779999987543222111 111247889999999999999999999
Q ss_pred EEEECCC
Q 006909 467 YVWNYDE 473 (626)
Q Consensus 467 ~iwd~~~ 473 (626)
+||++..
T Consensus 687 ~iW~i~~ 693 (694)
T 3dm0_A 687 RVWGIGR 693 (694)
T ss_dssp EEEEC--
T ss_pred EEEeccC
Confidence 9999863
No 83
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.6e-31 Score=274.35 Aligned_cols=246 Identities=19% Similarity=0.341 Sum_probs=204.9
Q ss_pred cccCcEEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 179 AHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 179 ~H~~~V~~l~fspd----g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
.|.+.|++++|+|+ |++|++|+.||.|++||+.+
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~------------------------------------------ 104 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT------------------------------------------ 104 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT------------------------------------------
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh------------------------------------------
Confidence 37789999999999 67999999999999999987
Q ss_pred cccCCCceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCCCeeeEee----cCCCCeEEEEEeeCCCCEEEEEe
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~s~s 328 (626)
...+..+.+|...|.+++|+| ++ +|++++.|+.|++||+.+++.+..+ .|...|.+++|+| ++++|++++
T Consensus 105 ---~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 180 (366)
T 3k26_A 105 ---MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCG 180 (366)
T ss_dssp ---CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEE
T ss_pred ---ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEec
Confidence 344677889999999999999 66 8999999999999999999998887 4889999999999 999999999
Q ss_pred CCCcEEEEeCCCCeEEE-----------------------------eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEc
Q 006909 329 IDGKVRIWGVCEKRVVD-----------------------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 379 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~-----------------------------~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~ 379 (626)
.||.|++||+++++... ...|...|.+++|+ ++++++++.||.|++||+
T Consensus 181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~ 258 (366)
T 3k26_A 181 MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKP 258 (366)
T ss_dssp TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEE
T ss_pred CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeC
Confidence 99999999998765432 12288899999998 779999999999999999
Q ss_pred CCCceeeeEE-------eeccccccCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEeCCcc------eeeeeecCCCCC
Q 006909 380 SGNDLKLEKV-------DFHDRKKTSGNKITGIQFSRD--ESQRIMITSEDSKLRILDGVDV------IHKFKGLPKSGS 444 (626)
Q Consensus 380 ~~~~~~~~~~-------~~~~~~~~~~~~i~~l~~s~~--~~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~ 444 (626)
.+........ ........|...|++++|+|+ + .+|++++.||.|++||+... ...+..+.+...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 337 (366)
T 3k26_A 259 GKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAA 337 (366)
T ss_dssp SSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSC
T ss_pred CCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCCCCCccccceEEcccccCCc
Confidence 8765411100 011112334578999999999 7 79999999999999998743 224444444799
Q ss_pred eEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 445 QMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 445 v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
|.+++|+|++++|++++.||.|++||+.+
T Consensus 338 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 338 IRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred eEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 99999999999999999999999999863
No 84
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.9e-32 Score=278.48 Aligned_cols=243 Identities=15% Similarity=0.171 Sum_probs=182.2
Q ss_pred eeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC--eeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909 263 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338 (626)
Q Consensus 263 ~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~--~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~ 338 (626)
.+..|.++|++++|+|++ +|++++.|+.|++||+.++ +.+..+ .|...|.+++|+| ++++|++++.|++|++||+
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC--
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEc
Confidence 344567899999999988 8999999999999999988 666666 4899999999999 9999999999999999999
Q ss_pred CCCe----EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909 339 CEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 414 (626)
Q Consensus 339 ~~~~----~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~ 414 (626)
.++. ......|...|.+++|+|++++|++++.|+.|++||+...........+. ..|...|++++|+|++ .+
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~-~~ 160 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK---RPLRSTILSLDWHPNN-VL 160 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC---SSCCSCEEEEEECTTS-SE
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee---cccCCCeEEEEEcCCC-CE
Confidence 9876 56677899999999999999999999999999999998765311111111 1145899999999997 79
Q ss_pred EEEEeCCCcEEEEeCCc------------------ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCC
Q 006909 415 IMITSEDSKLRILDGVD------------------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 476 (626)
Q Consensus 415 l~~~s~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 476 (626)
|++++.|+.|++||+.. ....... .|...|.+++|+|++++|++++.|+.|++||+.++..
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 99999999999999741 1111222 6888999999999999999999999999999998743
Q ss_pred C-----CCCccCCccceeeeccCCcEEEEecCCCCcccccc
Q 006909 477 P-----SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL 512 (626)
Q Consensus 477 ~-----~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~ 512 (626)
+ ..........++.|+|++..++.+ +.++..++..
T Consensus 240 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~~~~~~ 279 (377)
T 3dwl_C 240 PPRALITVKLSQLPLRSLLWANESAIVAAG-YNYSPILLQG 279 (377)
T ss_dssp CEEECCCEECSSSCEEEEEEEETTEEEEEE-SSSSEEEECC
T ss_pred cceeeEeecCCCCceEEEEEcCCCCEEEEE-cCCcEEEEEe
Confidence 1 111222334556677777766555 4444444443
No 85
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2e-30 Score=272.31 Aligned_cols=282 Identities=18% Similarity=0.253 Sum_probs=225.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909 183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 262 (626)
Q Consensus 183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (626)
.++.|+||++ ++||+|. |++|+|||+.+++.. .+.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-------------------------------------------~~~ 141 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-------------------------------------------QLL 141 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-------------------------------------------EEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-------------------------------------------EEE
Confidence 4678999976 5888776 899999999885321 123
Q ss_pred eeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006909 263 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 340 (626)
Q Consensus 263 ~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~ 340 (626)
.+.+|...|++|+|+|+| +|++|+.|++|+|||+.+++++..+. |...+.++.+ ++.++++|+.|+.+++||...
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~---~~~~l~sgs~d~~i~~~d~~~ 218 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRV 218 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTS
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee---CCCEEEEEeCCCceeEeeecc
Confidence 445788899999999998 99999999999999999999998885 8889999887 468999999999999999876
Q ss_pred Ce--EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909 341 KR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 418 (626)
Q Consensus 341 ~~--~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~ 418 (626)
.. ...+..|...+..+.++|+++++++++.|+.+++|+............ ....+...|.+++|+|.+..+++++
T Consensus 219 ~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~---~~~~~~~~V~~~~~~p~~~~~la~~ 295 (420)
T 4gga_A 219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ---TFTQHQGAVKAVAWCPWQSNVLATG 295 (420)
T ss_dssp SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE---EECCCSSCEEEEEECTTCTTEEEEE
T ss_pred cceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeee---eecccCCceeeeeeCCCcccEEEEE
Confidence 43 445778999999999999999999999999999999987654322111 1223457899999999887777764
Q ss_pred --eCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe--CCccEEEEECCCCCCCCCCccCCccceeeeccC
Q 006909 419 --SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE 494 (626)
Q Consensus 419 --s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 494 (626)
+.|++|++||+.+........ +...+.++.|+|+++.+++++ .|+.|+|||+.++.
T Consensus 296 ~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~------------------- 355 (420)
T 4gga_A 296 GGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA------------------- 355 (420)
T ss_dssp ECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC-------------------
T ss_pred eecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc-------------------
Confidence 579999999988765544443 456789999999999998875 78999999987641
Q ss_pred CcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909 495 GVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 495 g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~ 570 (626)
.+.. +.+|...|++++|+|||++|++++. |++|++||+...
T Consensus 356 --~v~~--------------------------------l~gH~~~V~~l~~spdg~~l~S~s~-D~tvriWdv~~~ 396 (420)
T 4gga_A 356 --KVAE--------------------------------LKGHTSRVLSLTMSPDGATVASAAA-DETLRLWRCFEL 396 (420)
T ss_dssp --EEEE--------------------------------ECCCSSCEEEEEECTTSSCEEEEET-TTEEEEECCSCS
T ss_pred --EEEE--------------------------------EcCCCCCEEEEEEcCCCCEEEEEec-CCeEEEEECCCC
Confidence 1110 1234456778889999999999988 899999998764
No 86
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.3e-31 Score=269.59 Aligned_cols=249 Identities=14% Similarity=0.193 Sum_probs=206.6
Q ss_pred cccCcEEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 179 AHKGCIWTLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 179 ~H~~~V~~l~fspd---g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
+|.+.|++++|+|+ |++|++|+.||.|++||+.++
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------------------------------------ 100 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAP------------------------------------------ 100 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSC------------------------------------------
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCC------------------------------------------
Confidence 79999999999999 699999999999999999872
Q ss_pred ccCCCceeeccCccceEEEEE------cCCC-eEEEEeCCCcEEEeccCCCe-eeEeec-C----CCCeEEEE----Eee
Q 006909 256 IEESPLQELHGHKGDVLDLAW------SNSN-YLLSCSMDKTVRMWQVGCNQ-CLNVFD-H----HNYVTCVQ----FNP 318 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~------s~~~-~l~s~s~d~~v~iwd~~~~~-~~~~~~-~----~~~v~~~~----~~p 318 (626)
..++..+.+|...|.+++| +|++ +|++++.|+.|++||+.++. .+..+. + ...+.+++ |+|
T Consensus 101 --~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (357)
T 3i2n_A 101 --EMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ 178 (357)
T ss_dssp --SSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred --CccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC
Confidence 1256778899999999965 5666 89999999999999999886 566663 2 33899998 677
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEee---CCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc
Q 006909 319 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 395 (626)
Q Consensus 319 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp---~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~ 395 (626)
++++|++++.||.|++||+++++......+...|.+++|+| ++.++++++.||.|++||+++...... +... ..
T Consensus 179 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~-~~ 255 (357)
T 3i2n_A 179 -EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG-FASV-SE 255 (357)
T ss_dssp -CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE-EEEE-EE
T ss_pred -CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc-eeee-cc
Confidence 99999999999999999999999888888999999999999 999999999999999999986543322 1110 12
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-------------------eeeeeecCCCCCeEEEEEcCCCCE
Q 006909 396 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-------------------IHKFKGLPKSGSQMSASFTTTGKH 456 (626)
Q Consensus 396 ~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-------------------~~~~~~~~~~~~v~~~~~sp~g~~ 456 (626)
..|...|++++|+|++..++++++.||.|++||+... ........|...|.+++|+|++++
T Consensus 256 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 335 (357)
T 3i2n_A 256 KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG 335 (357)
T ss_dssp ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT
T ss_pred CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe
Confidence 2456899999999998448999999999999997531 122333458889999999999999
Q ss_pred EE-EEeCCccEEEEECCCC
Q 006909 457 II-SIGDDCRVYVWNYDEL 474 (626)
Q Consensus 457 l~-s~s~dg~I~iwd~~~~ 474 (626)
|+ +++.|+.|++||+.+.
T Consensus 336 l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 336 LCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEETTSEEEEEEECC-
T ss_pred EEEEecCCCcEEEEECCCc
Confidence 98 8999999999999874
No 87
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-31 Score=282.77 Aligned_cols=305 Identities=7% Similarity=-0.019 Sum_probs=206.6
Q ss_pred eEEEEeCCCcEEEeccCCCeee----Eee-cCCCCeEEEEEeeC-----CCCEEEEEeCCCcEEEEeCCCCeE-------
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCL----NVF-DHHNYVTCVQFNPI-----DDNYFISGSIDGKVRIWGVCEKRV------- 343 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~----~~~-~~~~~v~~~~~~p~-----~~~~l~s~s~dg~v~iwd~~~~~~------- 343 (626)
.|++++.|++|+|||+.++++. ..+ .|...|.+++|+|. ++.+|++++.||+|++||+..+..
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 4666788999999999877642 233 36789999999992 257999999999999999976531
Q ss_pred -----EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE--EEcCCCCcEEE
Q 006909 344 -----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI--QFSRDESQRIM 416 (626)
Q Consensus 344 -----~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l--~~s~~~~~~l~ 416 (626)
..+..|...|++++|+|++ .|++|+.||+|++||+++...+...+. .|...|+++ .|+|++..+|+
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~------~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQ------VHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEE------CSSSCEEEEEEECCTTSCCEEE
T ss_pred ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEee------cccccEEEEEEEcCCCCCeEEE
Confidence 2456788999999999865 899999999999999987643332222 345889999 56777546899
Q ss_pred EEeCCCcEEEEeCCcce--eeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccC
Q 006909 417 ITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE 494 (626)
Q Consensus 417 ~~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 494 (626)
+++.|++|+|||+++.. ..+.++.....|.+++|+|+++.+++++.|++|++||+.++.... . ...+.
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~--------~--l~gH~ 397 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH--------P--LVSRE 397 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE--------E--EEECS
T ss_pred EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce--------e--eecCC
Confidence 99999999999987533 344443333458899999999999999999999999998752211 0 11244
Q ss_pred CcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCC--------CcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909 495 GVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDS--------ERFSLGSWFSNDGPCRGSATWPAEKLPLWD 566 (626)
Q Consensus 495 g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~--------~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd 566 (626)
+.+.+++|+|++..+++.+.+ +.+++|+.... ....+ ...+..++|+|+|..+.. + ....+|+
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~D---gtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~--~~~~~~~ 468 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSAD---GSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--D--SSYEVYP 468 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETT---TEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEEE--C--CCCCCCC
T ss_pred CceEEEEeCCCCCeEEEEECC---CEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEEc--c--CCceecc
Confidence 567788888888877765444 45677776432 11211 114568999999995532 2 1234454
Q ss_pred cc-cCCCCCCCChhhHHHHhhhccCCcc--ccccccc--cceEEEEecCCceEeeeeecCc
Q 006909 567 VT-IDSDGYCQDPQQQRLQQQCLNNVDD--VRAISAT--WGLVIVTAGCDGMIKTFHNYGL 622 (626)
Q Consensus 567 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~--dg~~ivt~g~Dg~Irvw~~~g~ 622 (626)
.. ++ ........|... .+++++. .|..||+|+.||+||||+.-|.
T Consensus 469 ~~~~g-----------~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 469 LTVND-----------VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp ------------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred cccCC-----------cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 33 22 112222333333 3466663 2569999999999999998764
No 88
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.98 E-value=8.3e-31 Score=272.62 Aligned_cols=258 Identities=14% Similarity=0.182 Sum_probs=208.1
Q ss_pred cccccccccCcEEEEEEcCC----C---CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCc
Q 006909 173 TSQEIQAHKGCIWTLKFSPD----G---RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV 245 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspd----g---~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (626)
....+.+|...|++++|+|+ | ++|++|+.||.|++|++.++....
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~---------------------------- 105 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK---------------------------- 105 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC----------------------------
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccc----------------------------
Confidence 45567799999999999999 9 999999999999999998632100
Q ss_pred eeecCCccccccCCCceeeccC-----ccceEEEEEc----CCC-e-EEEEeCCCcEEEeccCC------CeeeE-----
Q 006909 246 PVVIPDEVFQIEESPLQELHGH-----KGDVLDLAWS----NSN-Y-LLSCSMDKTVRMWQVGC------NQCLN----- 303 (626)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~s----~~~-~-l~s~s~d~~v~iwd~~~------~~~~~----- 303 (626)
...+..+.+| ...|.+++|+ |++ + |++++.|+.|++||+.+ ++.+.
T Consensus 106 ------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 173 (397)
T 1sq9_A 106 ------------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL 173 (397)
T ss_dssp ------------CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE
T ss_pred ------------cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcc
Confidence 0115566677 5999999999 887 7 99999999999999988 66554
Q ss_pred ee--------cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-ecc---C---CCCeEEEEEeeCCCEEEEE
Q 006909 304 VF--------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD---V---RDVISAICYIPDGKGFIVG 368 (626)
Q Consensus 304 ~~--------~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~---~---~~~i~~i~~sp~g~~l~~g 368 (626)
.+ .|...|.+++|+| ++ +|++++.||.|++||+++++... +.. | ...|.+++|+|++++|+++
T Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~ 251 (397)
T 1sq9_A 174 ELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 251 (397)
T ss_dssp EEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE
T ss_pred eeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEE
Confidence 44 2688999999999 88 99999999999999999887665 444 6 8999999999999999999
Q ss_pred ecC---CcEEEEEcCCCceeeeEEeecc-------ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeee
Q 006909 369 SIT---GTCHFYKASGNDLKLEKVDFHD-------RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG 438 (626)
Q Consensus 369 ~~d---g~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 438 (626)
+.| |.|++||+.+...... +.... ....|...|.+++|+|++ .+|++++.|+.|++||+.+.......
T Consensus 252 ~~d~~~g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 329 (397)
T 1sq9_A 252 HDSNSFGCITLYETEFGERIGS-LSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERITTL 329 (397)
T ss_dssp EEETTEEEEEEEETTTCCEEEE-ECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ecCCCCceEEEEECCCCcccce-eccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceeEEE
Confidence 999 9999999987765332 21100 000145899999999997 79999999999999998765444443
Q ss_pred c------CC---------------CCCeEEEEEcCCC----------CEEEEEeCCccEEEEECCCC
Q 006909 439 L------PK---------------SGSQMSASFTTTG----------KHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 439 ~------~~---------------~~~v~~~~~sp~g----------~~l~s~s~dg~I~iwd~~~~ 474 (626)
. .| ...|.+++|+|++ ++|++++.||.|++|++.++
T Consensus 330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 330 NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp ECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 3 45 8899999999998 79999999999999999865
No 89
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=7.5e-30 Score=256.65 Aligned_cols=281 Identities=18% Similarity=0.254 Sum_probs=219.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909 184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 263 (626)
Q Consensus 184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (626)
.++|+||+++ +||+|. |++|+|||+.+++.. ....
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~-------------------------------------------~~~~ 62 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL-------------------------------------------QLLQ 62 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE-------------------------------------------EEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEE-------------------------------------------EEEE
Confidence 5789999986 777765 899999999884321 1223
Q ss_pred eccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909 264 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 341 (626)
Q Consensus 264 ~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~ 341 (626)
+.+|...|++++|+|++ +|++|+.|++|++||+.+++++..+. |...+.++.+ ++..+++++.++.+++|+....
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~ 139 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVA 139 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSS
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCC
Confidence 45788899999999987 89999999999999999999988885 7777777655 5689999999999999998764
Q ss_pred e--EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE--E
Q 006909 342 R--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM--I 417 (626)
Q Consensus 342 ~--~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~--~ 417 (626)
. ......|...+..+.++++++++++++.||.|++||+.+.+....... ....+...|.++.++|++...+. +
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~ 216 (318)
T 4ggc_A 140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ---TFTQHQGAVKAVAWCPWQSNVLATGG 216 (318)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE---EECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee---eecccCCceEEEEecCCCCcEEEEEe
Confidence 3 445678999999999999999999999999999999987654332111 12223478999999998766554 4
Q ss_pred EeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe--CCccEEEEECCCCCCCCCCccCCccceeeeccCC
Q 006909 418 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG 495 (626)
Q Consensus 418 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g 495 (626)
++.++.|++||.......... .+...+..+.|+|+++.+++++ .|+.|++||+.++.
T Consensus 217 ~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~-------------------- 275 (318)
T 4ggc_A 217 GTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-------------------- 275 (318)
T ss_dssp CTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--------------------
T ss_pred cCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc--------------------
Confidence 567899999998755443333 3667899999999999988765 79999999987641
Q ss_pred cEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909 496 VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 496 ~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~ 570 (626)
.+.. +.+|...|++++|+|||++|++++. |++|++||+...
T Consensus 276 -~~~~--------------------------------l~gH~~~V~~l~~spdg~~l~S~s~-D~~v~iWd~~~~ 316 (318)
T 4ggc_A 276 -KVAE--------------------------------LKGHTSRVLSLTMSPDGATVASAAA-DETLRLWRCFEL 316 (318)
T ss_dssp -EEEE--------------------------------ECCCSSCEEEEEECTTSSCEEEEET-TTEEEEECCSCC
T ss_pred -EEEE--------------------------------EcCCCCCEEEEEEcCCCCEEEEEec-CCeEEEEECCCC
Confidence 1110 1234456778888899998999888 899999998654
No 90
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.98 E-value=1.4e-29 Score=269.52 Aligned_cols=245 Identities=21% Similarity=0.358 Sum_probs=206.8
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
.....++.+|.+.|++++|+|++ +|++|+.||+|++||+.++
T Consensus 152 ~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~------------------------------------- 193 (464)
T 3v7d_B 152 KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG------------------------------------- 193 (464)
T ss_dssp TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT-------------------------------------
T ss_pred CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC-------------------------------------
Confidence 34566788999999999999988 9999999999999999873
Q ss_pred CccccccCCCceeeccCccceEEEEEcC--CC-eEEEEeCCCcEEEeccCCCeee-----------------------Ee
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCNQCL-----------------------NV 304 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~~-~l~s~s~d~~v~iwd~~~~~~~-----------------------~~ 304 (626)
..+..+.+|...|.+++|++ ++ ++++++.|++|++||+.++... ..
T Consensus 194 --------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 194 --------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp --------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred --------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 34667889999999999984 55 8999999999999999876532 22
Q ss_pred e-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCC
Q 006909 305 F-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 382 (626)
Q Consensus 305 ~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~ 382 (626)
+ .|...|.++ ++ +++++++|+.||.|++||+++++.+. +..|...|.+++|+|+++++++|+.||.|++||+.++
T Consensus 266 ~~~~~~~v~~~--~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 342 (464)
T 3v7d_B 266 LRGHMASVRTV--SG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 342 (464)
T ss_dssp ECCCSSCEEEE--EE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred ccCccceEEEE--cC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 2 477788877 45 78999999999999999999887654 5678999999999999999999999999999999887
Q ss_pred ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 006909 383 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD 462 (626)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~ 462 (626)
+.... + ..|...|.+++|++ .++++++.||.|++||+.+....+... +...+..++|+|++++|++++
T Consensus 343 ~~~~~-~------~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~- 410 (464)
T 3v7d_B 343 ELMYT-L------QGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS- 410 (464)
T ss_dssp EEEEE-E------CCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-
T ss_pred cEEEE-E------eCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-
Confidence 65322 2 23458899999984 589999999999999998766666553 566788889999999999998
Q ss_pred CccEEEEECCCCCC
Q 006909 463 DCRVYVWNYDELCF 476 (626)
Q Consensus 463 dg~I~iwd~~~~~~ 476 (626)
||.|++||+.++..
T Consensus 411 dg~i~iwd~~~g~~ 424 (464)
T 3v7d_B 411 ENQFNIYNLRSGKL 424 (464)
T ss_dssp TTEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcE
Confidence 89999999998743
No 91
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=1.1e-30 Score=272.68 Aligned_cols=255 Identities=18% Similarity=0.283 Sum_probs=211.9
Q ss_pred cccccccccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 173 TSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
....+.+|.+.|++++|+| ++++||+|+.||+|+|||+.++....
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~---------------------------------- 118 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL---------------------------------- 118 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS----------------------------------
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc----------------------------------
Confidence 3455789999999999999 99999999999999999998742110
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEee--c-CCCCeEEEEEeeCCCCEEEE
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF--D-HHNYVTCVQFNPIDDNYFIS 326 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~--~-~~~~v~~~~~~p~~~~~l~s 326 (626)
....++..+.+|...|.+++|+|++ +|++++.|++|++||+.+++.+..+ . |...|.+++|+| ++++|++
T Consensus 119 ----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 193 (402)
T 2aq5_A 119 ----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICT 193 (402)
T ss_dssp ----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEE
T ss_pred ----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEE
Confidence 0124577888999999999999985 8999999999999999999999888 3 889999999999 9999999
Q ss_pred EeCCCcEEEEeCCCCeEEEe--ccCCCC-eEEEEEeeCCCEEEEE---ecCCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909 327 GSIDGKVRIWGVCEKRVVDW--ADVRDV-ISAICYIPDGKGFIVG---SITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 400 (626)
Q Consensus 327 ~s~dg~v~iwd~~~~~~~~~--~~~~~~-i~~i~~sp~g~~l~~g---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 400 (626)
++.||.|++||+++++.... ..|... +.++.|+|++++|++| +.|+.|++||+.+........... +..
T Consensus 194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~ 268 (402)
T 2aq5_A 194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD-----TSS 268 (402)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC-----CCS
T ss_pred EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc-----CCC
Confidence 99999999999999887654 456655 8999999999999999 789999999998876533333222 236
Q ss_pred CeEEEEEcCCCCcEE-EEEeCCCcEEEEeCCcc---eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 401 KITGIQFSRDESQRI-MITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l-~~~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.+.+++|+|++. ++ ++++.|+.|++||+.+. ...+..+.+...+.+++|+|++.++++ .++.+++|++.++
T Consensus 269 ~v~~~~~s~~~~-~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 269 GVLLPFFDPDTN-IVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp SCEEEEEETTTT-EEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred ceeEEEEcCCCC-EEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 799999999984 55 46668999999997643 445555557789999999999998875 5779999999864
No 92
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=6.9e-31 Score=273.80 Aligned_cols=295 Identities=15% Similarity=0.181 Sum_probs=220.6
Q ss_pred CCceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCCCeeeEeec--------------CCCCeEEEEEeeCCCC
Q 006909 259 SPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------------HHNYVTCVQFNPIDDN 322 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--------------~~~~v~~~~~~p~~~~ 322 (626)
.....+.+|.+.|++++|+| ++ +|++++.||.|++||+.++.....+. |...|.+++|+|.+++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 45667788999999999999 77 89999999999999999876655543 8899999999996778
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeC---CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCC
Q 006909 323 YFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 399 (626)
Q Consensus 323 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~---g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 399 (626)
+|++++.||.|++||+.+++......+...+.++.++|. +.++++++.+|.|++||+.+...... + ..|.
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~------~~~~ 186 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI-L------QGHR 186 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE-E------CCCC
T ss_pred EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee-e------cCCC
Confidence 999999999999999999998888889999999999995 45999999999999999987754322 2 2345
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce---eeee-------------ecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909 400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVI---HKFK-------------GLPKSGSQMSASFTTTGKHIISIGDD 463 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~-------------~~~~~~~v~~~~~sp~g~~l~s~s~d 463 (626)
..|++++|+|++..++++++.||.|++||++... ..+. ...|...|.+++|+|++++|++++.|
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 266 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD 266 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC
Confidence 7999999999985579999999999999986432 1111 13477899999999999999999999
Q ss_pred ccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCc
Q 006909 464 CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGS 543 (626)
Q Consensus 464 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 543 (626)
|.|++||+.++........... .....+ .....
T Consensus 267 g~i~vwd~~~~~~~~~~~~~~~----~~~~~~-------------------------------------------~~~~~ 299 (408)
T 4a11_B 267 NRMRLWNSSNGENTLVNYGKVC----NNSKKG-------------------------------------------LKFTV 299 (408)
T ss_dssp SCEEEEETTTCCBCCCCCCCCC----CCCSSC-------------------------------------------CCCEE
T ss_pred CeEEEEECCCCccceecccccc----cccccc-------------------------------------------ceeEE
Confidence 9999999987632111100000 000000 00000
Q ss_pred cccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccc--ccccccceEEEEecCCceEeeeeecC
Q 006909 544 WFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR--AISATWGLVIVTAGCDGMIKTFHNYG 621 (626)
Q Consensus 544 ~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~dg~~ivt~g~Dg~Irvw~~~g 621 (626)
....+..++.++. ++.|.+||+.++ ........|...+. ++++ +|.+|+||+.||+|++|+...
T Consensus 300 -~~~~~~~~~~~~~-~~~i~v~d~~~~-----------~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 300 -SCGCSSEFVFVPY-GSTIAVYTVYSG-----------EQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp -CCSSSSCEEEEEE-TTEEEEEETTTC-----------CEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC
T ss_pred -ecCCCceEEEEec-CCEEEEEECcCC-----------cceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCC
Confidence 1111222444444 688999999887 22223333444433 4555 899999999999999999643
No 93
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=4.5e-30 Score=270.40 Aligned_cols=257 Identities=21% Similarity=0.296 Sum_probs=210.2
Q ss_pred cccccCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 177 IQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 177 l~~H~~~V~~l~fspd-g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
+.+|.+.|++++|+|+ +.+||+|+.||.|+||++.+...... ..
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------------------------~~ 168 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------------------------PS 168 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------------------------TT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------------------------cc
Confidence 4479999999999997 67999999999999999975211000 00
Q ss_pred ccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCee-------eEee-cCCCCeEEEEEeeCCCCEEE
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC-------LNVF-DHHNYVTCVQFNPIDDNYFI 325 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~-------~~~~-~~~~~v~~~~~~p~~~~~l~ 325 (626)
....++..+.+|...|.+++|+|++ +|++|+.||+|++||+.++.. ...+ .|...|.+++|+|.++.+|+
T Consensus 169 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~ 248 (430)
T 2xyi_A 169 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 248 (430)
T ss_dssp CCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEE
T ss_pred ccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEE
Confidence 0135577888999999999999975 899999999999999987322 2333 58889999999997788999
Q ss_pred EEeCCCcEEEEeCCCC----eEEEeccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909 326 SGSIDGKVRIWGVCEK----RVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 400 (626)
Q Consensus 326 s~s~dg~v~iwd~~~~----~~~~~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 400 (626)
+++.||.|++||++++ .......|...|++++|+|++. .+++|+.||.|++||++........+.. |..
T Consensus 249 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~------h~~ 322 (430)
T 2xyi_A 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES------HKD 322 (430)
T ss_dssp EEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC------CSS
T ss_pred EEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec------CCC
Confidence 9999999999999876 3344568899999999999987 6889999999999999875544433332 347
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc--------------ceeeeeecCCCCCeEEEEEcCCCC-EEEEEeCCcc
Q 006909 401 KITGIQFSRDESQRIMITSEDSKLRILDGVD--------------VIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCR 465 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s~dg~ 465 (626)
.|++++|+|++..+|++++.|+.|+|||+.. ....+....|...|.+++|+|+++ +|++++.||.
T Consensus 323 ~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~ 402 (430)
T 2xyi_A 323 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 402 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence 9999999999877899999999999999765 233444455788999999999999 8999999999
Q ss_pred EEEEECCCC
Q 006909 466 VYVWNYDEL 474 (626)
Q Consensus 466 I~iwd~~~~ 474 (626)
|+||++...
T Consensus 403 i~iw~~~~~ 411 (430)
T 2xyi_A 403 MQVWQMAEN 411 (430)
T ss_dssp EEEEEECHH
T ss_pred EEEeEcccc
Confidence 999999864
No 94
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.1e-29 Score=267.89 Aligned_cols=281 Identities=20% Similarity=0.305 Sum_probs=222.8
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
.+|...|++++| ++++|++|+.||.|++||+.+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~--------------------------------------------- 162 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT--------------------------------------------- 162 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS---------------------------------------------
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC---------------------------------------------
Confidence 457778999887 789999999999999999987
Q ss_pred CCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 258 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
......+.+|...|.+++| .+..|++|+.||+|++||+.+++++..+. |...|.+++|+ ++++++|+.||.|++|
T Consensus 163 ~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vw 238 (435)
T 1p22_A 163 LECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVW 238 (435)
T ss_dssp CCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC---TTEEEEEETTSCEEEE
T ss_pred CeEEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc---CCEEEEeeCCCcEEEE
Confidence 3446778899999999999 33599999999999999999999988885 88899999996 4699999999999999
Q ss_pred eCCCCeE----EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909 337 GVCEKRV----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 337 d~~~~~~----~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
|+.++.. ....+|...|.+++| +++++++|+.||.|++||+.+...... +. .|...|.++.|++
T Consensus 239 d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~------~~~~~v~~~~~~~--- 306 (435)
T 1p22_A 239 DMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT-LN------GHKRGIACLQYRD--- 306 (435)
T ss_dssp ECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE-EE------CCSSCEEEEEEET---
T ss_pred eCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEE-Ec------CCCCcEEEEEeCC---
Confidence 9987654 346688899999998 788999999999999999998765332 22 2347899999953
Q ss_pred cEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeec
Q 006909 413 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 492 (626)
Q Consensus 413 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 492 (626)
.++++++.||.|++||+.+.........|...|.+++| ++.+|++|+.||.|++||+.++..+....
T Consensus 307 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~----------- 373 (435)
T 1p22_A 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPA----------- 373 (435)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCT-----------
T ss_pred CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccc-----------
Confidence 58999999999999998866555555568899999998 78999999999999999997642111000
Q ss_pred cCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909 493 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 493 ~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~ 570 (626)
....+. .+..+...+.+++| |+.++++++. |+.|++||+...
T Consensus 374 -~~~~~~--------------------------------~~~~h~~~v~~l~~--~~~~l~s~s~-Dg~i~iwd~~~~ 415 (435)
T 1p22_A 374 -GTLCLR--------------------------------TLVEHSGRVFRLQF--DEFQIVSSSH-DDTILIWDFLND 415 (435)
T ss_dssp -TTTEEE--------------------------------EECCCSSCCCCEEE--CSSCEEECCS-SSEEEEEC----
T ss_pred -cchhee--------------------------------eccCCCCCeEEEEe--CCCEEEEEeC-CCEEEEEECCCC
Confidence 000000 02234445677777 7888999888 899999999876
No 95
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.2e-29 Score=264.66 Aligned_cols=240 Identities=21% Similarity=0.351 Sum_probs=203.0
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
.|.+.|++++|+|+|++|++|+.||.|++||+.+ .
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~---------------------------------------------~ 166 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES---------------------------------------------Q 166 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT---------------------------------------------C
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC---------------------------------------------C
Confidence 3899999999999999999999999999999987 3
Q ss_pred CCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccC-CCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~-~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
..+..+.+|...|.+++|++ ..|++++.|+.|++||+. .+..+..+ .|...|.+++|+| ++++|++|+.|+.|++|
T Consensus 167 ~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iw 244 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIW 244 (401)
T ss_dssp CEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred eEEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEc
Confidence 44677789999999999954 589999999999999998 45555555 5899999999999 99999999999999999
Q ss_pred eCCCCeEE-EeccCCCCeEEEEEeeCCC-EEEEEe--cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909 337 GVCEKRVV-DWADVRDVISAICYIPDGK-GFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 337 d~~~~~~~-~~~~~~~~i~~i~~sp~g~-~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
|+++++.. .+..|...|.+++|+|++. .+++++ .|+.|++||+.+...... +. +...|++++|+|++
T Consensus 245 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~-~~-------~~~~v~~~~~s~~~- 315 (401)
T 4aez_A 245 DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT-VD-------AGSQVTSLIWSPHS- 315 (401)
T ss_dssp ETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE-EE-------CSSCEEEEEECSSS-
T ss_pred cCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE-Ee-------CCCcEEEEEECCCC-
Confidence 99987765 4567899999999999775 455544 699999999988765332 21 13689999999998
Q ss_pred cEEEEE--eCCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 413 QRIMIT--SEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 413 ~~l~~~--s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.+++++ +.||.|++||+.. .........|...|.+++|+|++++|++++.||.|++|++.++
T Consensus 316 ~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 316 KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 677774 4899999999775 4444445568899999999999999999999999999999886
No 96
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=2.4e-29 Score=264.01 Aligned_cols=242 Identities=18% Similarity=0.316 Sum_probs=202.5
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256 (626)
Q Consensus 177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (626)
+.+|.+.|++|+|+|+|++||+|+.||+|+|||+.+
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~-------------------------------------------- 178 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-------------------------------------------- 178 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--------------------------------------------
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC--------------------------------------------
Confidence 457889999999999999999999999999999987
Q ss_pred cCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCe-eeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909 257 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVR 334 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~-~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~ 334 (626)
.+.+..+.+|...+.++++++ ..|++|+.|+.+++||..... .+..+ .|...+..+.++| ++.++++++.|+.|+
T Consensus 179 -~~~~~~~~~h~~~v~~~s~~~-~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~ 255 (420)
T 4gga_A 179 -QKRLRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVN 255 (420)
T ss_dssp -TEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred -CcEEEEEeCCCCceEEEeeCC-CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccce
Confidence 345677889999999999864 489999999999999987643 33444 5899999999999 999999999999999
Q ss_pred EEeCCCCe-----EEEeccCCCCeEEEEEeeCCC-EEEE--EecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 335 IWGVCEKR-----VVDWADVRDVISAICYIPDGK-GFIV--GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 335 iwd~~~~~-----~~~~~~~~~~i~~i~~sp~g~-~l~~--g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
+|+...++ +.....+...|.+++|+|.+. .+++ |+.|++|++||+.++..... +.. ...+.++.
T Consensus 256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~-~~~-------~~~v~~~~ 327 (420)
T 4gga_A 256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-VDA-------HSQVCSIL 327 (420)
T ss_dssp EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE-EEC-------SSCEEEEE
T ss_pred EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee-ecc-------ccceeeee
Confidence 99998754 345677889999999999765 4444 35799999999998765432 221 26799999
Q ss_pred EcCCCCcEEEEEe--CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 407 FSRDESQRIMITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 407 ~s~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
|+|++ ..+++++ .|+.|+|||..+.........|...|.+++|+|+|++|+||+.|++|+|||+.+.
T Consensus 328 ~~~~~-~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 328 WSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EETTT-TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred ecCCC-CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99998 4565544 7899999998866665555668999999999999999999999999999999765
No 97
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.7e-29 Score=249.45 Aligned_cols=247 Identities=20% Similarity=0.281 Sum_probs=204.9
Q ss_pred ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
.....+..|.+.|++++|+|++++|++|+.||.|++|++.....
T Consensus 50 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~------------------------------------ 93 (313)
T 3odt_A 50 WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG------------------------------------ 93 (313)
T ss_dssp EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT------------------------------------
T ss_pred EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC------------------------------------
Confidence 34556778999999999999999999999999999999976321
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID 330 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~d 330 (626)
..++..+.+|...|.+++|. ++.|++++.|+.|++|| .++....+ .|...+.+++|.|.+++++++++.|
T Consensus 94 ------~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 94 ------EDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp ------SCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred ------CCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence 34567778999999999993 45999999999999999 55666655 4889999999998889999999999
Q ss_pred CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 331 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
|.|++||...........+...+.+++|+|++. +++++.||.|++||+++.+.... +. .|...|++++|+|+
T Consensus 165 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~-~~------~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 165 KTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT-YE------GHESFVYCIKLLPN 236 (313)
T ss_dssp SCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE-EE------CCSSCEEEEEECTT
T ss_pred CCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh-hh------cCCceEEEEEEecC
Confidence 999999944333333333889999999999998 99999999999999988765332 22 23578999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+ .+++++.|+.|++||+.+.........+...|.+++|+|+++ +++++.||.|++|++.++
T Consensus 237 ~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 237 G--DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp S--CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred C--CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 7 589999999999999876554444455788999999999998 567889999999999876
No 98
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2.8e-29 Score=250.55 Aligned_cols=252 Identities=17% Similarity=0.190 Sum_probs=192.9
Q ss_pred eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC--CeeeEee-cCCCCeEEEEEeeC-CCCEEEEEeCCCcEEEE
Q 006909 262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC--NQCLNVF-DHHNYVTCVQFNPI-DDNYFISGSIDGKVRIW 336 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~--~~~~~~~-~~~~~v~~~~~~p~-~~~~l~s~s~dg~v~iw 336 (626)
..+.+|...|++++|+|++ +|++|+.|++|+|||+.+ .+++..+ .|..+|.+++|+|. ++++|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 4567899999999999998 999999999999999974 3566666 59999999999862 38899999999999999
Q ss_pred eCCCCe---EEEeccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 337 GVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 337 d~~~~~---~~~~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
|+.+++ ......|...|.+++|+|+ |.+|++++.||.|++||++....... .. ...|...|.+++|+|++
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-~~----~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-II----IDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC-EE----EECCSSCEEEEEECCCC
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee-ee----eecccCccceEeecCCc
Confidence 998763 3445678899999999997 89999999999999999987532211 11 12345789999999973
Q ss_pred ------------CcEEEEEeCCCcEEEEeCCcce----eeeeecCCCCCeEEEEEcCCC---CEEEEEeCCccEEEEECC
Q 006909 412 ------------SQRIMITSEDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTG---KHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 412 ------------~~~l~~~s~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~g---~~l~s~s~dg~I~iwd~~ 472 (626)
..+|++++.|++|++||+.... .......|...|.+++|+|++ ++|++++.|++|+|||+.
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 2589999999999999976422 222334588999999999985 899999999999999998
Q ss_pred CCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccc
Q 006909 473 ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 526 (626)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~ 526 (626)
+...+...... . .-...+.+.+++|+|++..|+..+.+ +.+.+|+.
T Consensus 238 ~~~~~~~~~~~---~--~~~~~~~v~~~~~s~~g~~las~~~D---~~v~lw~~ 283 (297)
T 2pm7_B 238 NEQGPWKKTLL---K--EEKFPDVLWRASWSLSGNVLALSGGD---NKVTLWKE 283 (297)
T ss_dssp STTSCCEEEES---S--SSCCSSCEEEEEECSSSCCEEEEETT---SCEEEEEE
T ss_pred CCCCccceeee---e--cccCCCcEEEEEECCCCCEEEEEcCC---CcEEEEEE
Confidence 64211100000 0 00123456778888888877765554 34666765
No 99
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.8e-30 Score=264.25 Aligned_cols=291 Identities=13% Similarity=0.081 Sum_probs=226.5
Q ss_pred eccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe----eeEeecCCCCeEEEEEeeCCCC-EEEEEeCCCcEEEEe
Q 006909 264 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDN-YFISGSIDGKVRIWG 337 (626)
Q Consensus 264 ~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~----~~~~~~~~~~v~~~~~~p~~~~-~l~s~s~dg~v~iwd 337 (626)
..+|.+.|++++|+|++ +|++++.|+.|++||+.++. ......|...|.+++|+| +++ +|++|+.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEE
Confidence 45899999999999987 89999999999999998877 555667999999999999 899 999999999999999
Q ss_pred C-CCCeEEEecc--CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC---------CceeeeEEeeccccccCCCCeEEE
Q 006909 338 V-CEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASG---------NDLKLEKVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 338 ~-~~~~~~~~~~--~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~i~~l 405 (626)
+ .+++...+.. |...|.+++|+| ++.+++++.|+.|++||+.+ ..... ...+...|.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~ 156 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN--------NTKVKNKIFTM 156 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--------SSSSCCCEEEE
T ss_pred eccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee--------EEeeCCceEEE
Confidence 9 9988888888 999999999999 99999999999999999875 32211 11145889999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCc-ce--eeeeecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCCCCCCCCCc
Q 006909 406 QFSRDESQRIMITSEDSKLRILDGVD-VI--HKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQ 481 (626)
Q Consensus 406 ~~s~~~~~~l~~~s~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 481 (626)
+|+|++ +++++.|+.|++||+.. .. .......+...+.+++|+| +++++++++.||.|++|+++........
T Consensus 157 ~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~- 232 (342)
T 1yfq_A 157 DTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS- 232 (342)
T ss_dssp EECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC-
T ss_pred EecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc-
Confidence 999974 99999999999999876 32 2333345778999999999 9999999999999999999764100000
Q ss_pred cCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCC
Q 006909 482 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEK 561 (626)
Q Consensus 482 ~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~ 561 (626)
. . ...+...... ..-..+...+..++|+|+|+++++++. ++.
T Consensus 233 -~-~-----------~~~~~~~~~~------------------------~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~ 274 (342)
T 1yfq_A 233 -S-K-----------RFAFRCHRLN------------------------LKDTNLAYPVNSIEFSPRHKFLYTAGS-DGI 274 (342)
T ss_dssp -T-T-----------CEEEECCCCC------------------------TTCCSSCCCEEEEEECTTTCCEEEEET-TSC
T ss_pred -c-c-----------ceeeeccccc------------------------ccccccceeEEEEEEcCCCCEEEEecC-Cce
Confidence 0 0 0000000000 001133446788899999999999888 799
Q ss_pred CCCCCcccCCCCCCCChhhHHHHhhhccC-CccccccccccceEEEEecCCce-Eeeee
Q 006909 562 LPLWDVTIDSDGYCQDPQQQRLQQQCLNN-VDDVRAISATWGLVIVTAGCDGM-IKTFH 618 (626)
Q Consensus 562 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~dg~~ivt~g~Dg~-Irvw~ 618 (626)
|++||+.++ ........+ ...+..+. .+|.+|++|+.||+ .+.|.
T Consensus 275 i~vwd~~~~-----------~~~~~~~~~h~~~v~~~~-~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 275 ISCWNLQTR-----------KKIKNFAKFNEDSVVKIA-CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEETTTT-----------EEEEECCCCSSSEEEEEE-ECSSEEEEEEECTHHHHCSS
T ss_pred EEEEcCccH-----------hHhhhhhcccCCCceEec-CCCCeEEEEecCCccccccc
Confidence 999999887 222333344 55555666 68999999999999 55555
No 100
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1.7e-30 Score=261.82 Aligned_cols=254 Identities=17% Similarity=0.217 Sum_probs=191.1
Q ss_pred eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe--eeEee-cCCCCeEEEEEee-CCCCEEEEEeCCCcEEEE
Q 006909 262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNP-IDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~p-~~~~~l~s~s~dg~v~iw 336 (626)
..+.+|...|++++|+|++ +|++|+.|++|+|||+.++. ++..+ .|...|.+++|+| .++++|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3456899999999999987 89999999999999998775 34445 5999999999976 248899999999999999
Q ss_pred eCCCCe---EEEeccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 337 GVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 337 d~~~~~---~~~~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
|++++. ...+..|...|.+++|+|+ +.+|++|+.|++|++||+....... .......|...|.+++|+|++
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE----VKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE----ECCBTTSSSSCBCCCEECCCC
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc----eeeeeccccCCcceEEEcccc
Confidence 998763 3446679999999999998 8899999999999999998653211 111233456789999999973
Q ss_pred ----------------CcEEEEEeCCCcEEEEeCCcc---eeeeeecCCCCCeEEEEEcCCC----CEEEEEeCCccEEE
Q 006909 412 ----------------SQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTG----KHIISIGDDCRVYV 468 (626)
Q Consensus 412 ----------------~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~g----~~l~s~s~dg~I~i 468 (626)
..+|++++.|++|++||.... ........|...|.+++|+|++ ++|++++.|++|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 258999999999999997632 2223334588999999999987 89999999999999
Q ss_pred EECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCC
Q 006909 469 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSND 548 (626)
Q Consensus 469 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~d 548 (626)
|++.+..... . . ... +..+...+.+++|+|+
T Consensus 243 w~~~~~~~~~----~-~---------~~~-----------------------------------~~~~~~~v~~v~~sp~ 273 (316)
T 3bg1_A 243 WTCDDASSNT----W-S---------PKL-----------------------------------LHKFNDVVWHVSWSIT 273 (316)
T ss_dssp EECSSTTCCC----C-B---------CCE-----------------------------------EEECSSCEEEEEECTT
T ss_pred EEccCccccc----h-h---------hhh-----------------------------------hhcCCCcEEEEEEcCC
Confidence 9987631000 0 0 000 0112234667778888
Q ss_pred CCcccccCCCCCCCCCCCccc
Q 006909 549 GPCRGSATWPAEKLPLWDVTI 569 (626)
Q Consensus 549 g~~l~s~~~~d~~i~vwd~~~ 569 (626)
|+++++++. |+.|++|+...
T Consensus 274 g~~las~~~-D~~v~lw~~~~ 293 (316)
T 3bg1_A 274 ANILAVSGG-DNKVTLWKESV 293 (316)
T ss_dssp TCCEEEEES-SSCEEEEEECT
T ss_pred CCEEEEEcC-CCeEEEEEECC
Confidence 888888887 78899998653
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=3.9e-29 Score=260.87 Aligned_cols=275 Identities=15% Similarity=0.177 Sum_probs=213.1
Q ss_pred CcEEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909 182 GCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 260 (626)
Q Consensus 182 ~~V~~l~fspdg~~-Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (626)
.....++++|+... +++|+.||.|+||++...... ...
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------------------------------~~~ 73 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----------------------------------------DKN 73 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----------------------------------------CTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----------------------------------------CCC
Confidence 34556889998764 446788999999998652110 134
Q ss_pred ceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCCC-------eeeEee-cCCCCeEEEEEeeCCC-CEEEEEeC
Q 006909 261 LQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCN-------QCLNVF-DHHNYVTCVQFNPIDD-NYFISGSI 329 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~~-------~~~~~~-~~~~~v~~~~~~p~~~-~~l~s~s~ 329 (626)
+..+.+|.+.|++++|+| ++ +|++|+.||+|++||+.++ +.+..+ .|...|.+++|+| ++ ++|++++.
T Consensus 74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~ 152 (402)
T 2aq5_A 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGC 152 (402)
T ss_dssp CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEET
T ss_pred CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcC
Confidence 556789999999999999 66 9999999999999999887 445555 4899999999999 76 79999999
Q ss_pred CCcEEEEeCCCCeEEEe---ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 330 DGKVRIWGVCEKRVVDW---ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 330 dg~v~iwd~~~~~~~~~---~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
||.|++||+.+++.... ..|...|.+++|+|++++|++++.||.|++||+++..........+. ...+.++.
T Consensus 153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~ 227 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE-----GTRPVHAV 227 (402)
T ss_dssp TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSC-----SSSCCEEE
T ss_pred CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCC-----CCcceEEE
Confidence 99999999999887654 56899999999999999999999999999999998765432211221 13489999
Q ss_pred EcCCCCcEEEEE---eCCCcEEEEeCCccee--eeeecCCCCCeEEEEEcCCCCEEEE-EeCCccEEEEECCCCCCCCCC
Q 006909 407 FSRDESQRIMIT---SEDSKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIIS-IGDDCRVYVWNYDELCFPSSK 480 (626)
Q Consensus 407 ~s~~~~~~l~~~---s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~s-~s~dg~I~iwd~~~~~~~~~~ 480 (626)
|+|++ .+++++ +.|+.|++||+..... ......+...+..++|+|++++|++ ++.|+.|++|++.++...
T Consensus 228 ~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~--- 303 (402)
T 2aq5_A 228 FVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF--- 303 (402)
T ss_dssp ECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC---
T ss_pred EcCCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc---
Confidence 99997 788888 7999999999875332 2223346778999999999999975 557999999999875310
Q ss_pred ccCCccceeeeccCCcEEEEecCCCCccccc
Q 006909 481 QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKS 511 (626)
Q Consensus 481 ~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~ 511 (626)
......+...+.+.+++|+|++..++.
T Consensus 304 ----~~~l~~~~~~~~v~~~~~sp~~~~~~s 330 (402)
T 2aq5_A 304 ----LHYLSMFSSKESQRGMGYMPKRGLEVN 330 (402)
T ss_dssp ----EEEEEEECCSSCCSEEEECCGGGSCGG
T ss_pred ----eEeecccccCCcccceEEeccccccee
Confidence 111122223456678888888887764
No 102
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=3.3e-29 Score=256.69 Aligned_cols=308 Identities=10% Similarity=0.074 Sum_probs=207.8
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
+++.+|.+.|++++|+|||++||+|+.+| ++||++.++..
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~--------------------------------------- 52 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH--------------------------------------- 52 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE---------------------------------------
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce---------------------------------------
Confidence 34578999999999999999999998776 78999876321
Q ss_pred cccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
.... +...+..+++.+++ .+++++.|++|++||+.+++++..+.+...|.+++|++ + .++++ .++.
T Consensus 53 ------~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~-~--~~~~~-~~~~ 120 (355)
T 3vu4_A 53 ------IMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSR-E--FIVVS-YGDV 120 (355)
T ss_dssp ------EEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECS-S--EEEEE-ETTE
T ss_pred ------eeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcC-C--EEEEE-EcCE
Confidence 1111 11246677777654 44678888999999999999999999999999999986 3 45544 4789
Q ss_pred EEEEeCCCC-eEEEeccCCCCeEEEEEeeCCCEEEE--EecCCcEEEEEcCCCceeee--------EEee-ccccccCCC
Q 006909 333 VRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIV--GSITGTCHFYKASGNDLKLE--------KVDF-HDRKKTSGN 400 (626)
Q Consensus 333 v~iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~--g~~dg~i~i~d~~~~~~~~~--------~~~~-~~~~~~~~~ 400 (626)
|++||+.++ +.+..... ....+++++ .++++ |+.+|.|++||+.+...... .+.. ......|..
T Consensus 121 i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~ 196 (355)
T 3vu4_A 121 ISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN 196 (355)
T ss_dssp EEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSS
T ss_pred EEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC
Confidence 999999887 44332222 444566677 56666 58899999999987541100 0000 111344668
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCc-EEEEeCCcceeeeeec-C-CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC
Q 006909 401 KITGIQFSRDESQRIMITSEDSK-LRILDGVDVIHKFKGL-P-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 477 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~-~-~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 477 (626)
.|++++|+|+| .+|++++.|++ |++||+.+........ . |...|.+++|+|+|++|++++.|++|++||+......
T Consensus 197 ~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~ 275 (355)
T 3vu4_A 197 PIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDN 275 (355)
T ss_dssp CEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCC
T ss_pred ceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCc
Confidence 99999999997 79999999998 9999988655444443 2 7899999999999999999999999999999875211
Q ss_pred CCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCC
Q 006909 478 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATW 557 (626)
Q Consensus 478 ~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~ 557 (626)
........ +.|. . +. ..|.... .............++|++||+++++++.
T Consensus 276 ~~~~~~~~-----~~~~--~----~~------------------~~~~~~~-~~~~~~~~~~~~~~a~~~d~~~l~~~~~ 325 (355)
T 3vu4_A 276 KRHALKGW-----INMK--Y----FQ------------------SEWSLCN-FKLSVDKHVRGCKIAWISESSLVVVWPH 325 (355)
T ss_dssp CSEETTTT-----EECC--C----CC------------------CSSCSEE-EECCCCTTCCCCEEEESSSSEEEEEETT
T ss_pred ccccccce-----eecc--c----cc------------------cccceeE-EEeccCCCCCceEEEEeCCCCEEEEEeC
Confidence 11000000 0000 0 00 0011000 0000111122355789999999988887
Q ss_pred CCCCCCCCCcccC
Q 006909 558 PAEKLPLWDVTID 570 (626)
Q Consensus 558 ~d~~i~vwd~~~~ 570 (626)
|+.+++|++..+
T Consensus 326 -dg~~~~~~~~~~ 337 (355)
T 3vu4_A 326 -TRMIETFKVVFD 337 (355)
T ss_dssp -TTEEEEEEEEEE
T ss_pred -CCeEEEEEEEcC
Confidence 799999998776
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=5e-29 Score=253.26 Aligned_cols=298 Identities=14% Similarity=0.139 Sum_probs=210.5
Q ss_pred eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC----eeeEee-cCCCCeEEEEEeeC-CCCEEEEEeCCCcEE
Q 006909 262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN----QCLNVF-DHHNYVTCVQFNPI-DDNYFISGSIDGKVR 334 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~----~~~~~~-~~~~~v~~~~~~p~-~~~~l~s~s~dg~v~ 334 (626)
..+.+|.+.|++++|+|++ +|++|+.||.|++||+.++ +....+ .|...|++++|+|. ++++|++|+.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 4567999999999999988 8999999999999999876 344444 48999999999984 489999999999999
Q ss_pred EEeCCCCe----------EEEeccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeee-E-----Eeeccccc
Q 006909 335 IWGVCEKR----------VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLE-K-----VDFHDRKK 396 (626)
Q Consensus 335 iwd~~~~~----------~~~~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~-~-----~~~~~~~~ 396 (626)
+||+.++. ......|...|.+++|+|+ ++++++++.||.|++||+.+...... . ........
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99998752 4456788999999999999 99999999999999999987664322 1 01111122
Q ss_pred cCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEeCCcce--eeeeecCCCCCeEEEEEcCCC----CEEEEEeCCccEEE
Q 006909 397 TSGNKITGIQFSRD--ESQRIMITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTG----KHIISIGDDCRVYV 468 (626)
Q Consensus 397 ~~~~~i~~l~~s~~--~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~g----~~l~s~s~dg~I~i 468 (626)
.+...+.+++|+|+ ...++++++.++.+.+|+..... .......|...|.+++|+|++ ++|++++.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 45678999999997 23799999999999888865432 234445588999999999998 89999999999999
Q ss_pred EECCCCCCCCCCccCC-ccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCC--CCcccCCCcccCCccc
Q 006909 469 WNYDELCFPSSKQKNS-VRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET--APWIRDSERFSLGSWF 545 (626)
Q Consensus 469 wd~~~~~~~~~~~~~~-~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~--~~~~~~~~~~~~~~~~ 545 (626)
||+..+.......... ........+.....+... ...........|..... ......|...+++++|
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGR----------SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp EEEEECC-------------------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccc----------cccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 9998763322211110 000111111111111110 00111112222332221 1234567778999999
Q ss_pred cCCCCcccccCCCCCCCCCCCcccC
Q 006909 546 SNDGPCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 546 s~dg~~l~s~~~~d~~i~vwd~~~~ 570 (626)
+|+|+++++++. |+.|++|++.++
T Consensus 315 s~~~~~l~s~~~-dg~v~iw~~~~~ 338 (351)
T 3f3f_A 315 NLTGTILSSAGD-DGKVRLWKATYS 338 (351)
T ss_dssp CSSSCCEEEEET-TSCEEEEEECTT
T ss_pred cCCCCEEEEecC-CCcEEEEecCcC
Confidence 999999999998 899999999876
No 104
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=6.2e-28 Score=255.29 Aligned_cols=276 Identities=19% Similarity=0.310 Sum_probs=217.9
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
....+.+.+|.+.|++++|+ +++|++|+.||+|++||+.++
T Consensus 149 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~------------------------------------- 189 (445)
T 2ovr_B 149 GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG------------------------------------- 189 (445)
T ss_dssp CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT-------------------------------------
T ss_pred CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC-------------------------------------
Confidence 34566788999999999997 569999999999999999873
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeC
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~ 329 (626)
..+..+.+|...|.+++|++ +.+++|+.|++|++||+.+++++..+. |...|.+++| +++++++|+.
T Consensus 190 --------~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~ 257 (445)
T 2ovr_B 190 --------ECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAY 257 (445)
T ss_dssp --------EEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE---CSSCEEEEET
T ss_pred --------cEEEEECCCCCcEEEEEecC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE---CCCEEEEEcC
Confidence 44677789999999999964 579999999999999999999888874 8899999998 6789999999
Q ss_pred CCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909 330 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408 (626)
Q Consensus 330 dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 408 (626)
||.|++||+++++... +..|...|.+++| ++.++++++.||.|++||+.+...... + ..|...+.++.++
T Consensus 258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~-~------~~~~~~v~~~~~~ 328 (445)
T 2ovr_B 258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT-L------TGHQSLTSGMELK 328 (445)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEE-E------CCCCSCEEEEEEE
T ss_pred CCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEE-E------cCCcccEEEEEEe
Confidence 9999999999887654 5578899999998 889999999999999999988765332 2 2334678888875
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCcceeeeeec---CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCc
Q 006909 409 RDESQRIMITSEDSKLRILDGVDVIHKFKGL---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 485 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~ 485 (626)
+ .++++++.||.|++||+.+........ .|...|.+++|+ +++|++|+.||.|++||+.++........
T Consensus 329 ~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--- 400 (445)
T 2ovr_B 329 D---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVT--- 400 (445)
T ss_dssp T---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEE---
T ss_pred C---CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeec---
Confidence 3 489999999999999987544433332 277889999995 68999999999999999998632211100
Q ss_pred cceeeeccCCcEEEEecCCCCcccccccCCC
Q 006909 486 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS 516 (626)
Q Consensus 486 ~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~ 516 (626)
...-.+.+.+.+++|+|++..++..+.++
T Consensus 401 --~~~~~~~~~v~~~~~s~~~~~la~~~~dg 429 (445)
T 2ovr_B 401 --LESGGSGGVVWRIRASNTKLVCAVGSRNG 429 (445)
T ss_dssp --CTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred --cccCCCCceEEEEEecCCEEEEEEcccCC
Confidence 00012345566677777766666554443
No 105
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=9.7e-28 Score=241.18 Aligned_cols=242 Identities=17% Similarity=0.289 Sum_probs=199.3
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256 (626)
Q Consensus 177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (626)
+.+|...|++++|+|+|++||+|+.||+|+||++.+
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~-------------------------------------------- 98 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-------------------------------------------- 98 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT--------------------------------------------
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC--------------------------------------------
Confidence 457899999999999999999999999999999987
Q ss_pred cCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCee-eEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909 257 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC-LNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVR 334 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~ 334 (626)
.+.+..+.+|...+.++.+.+ ..+++++.++.+++|+...... +..+ .|...+.++.+.+ +++++++++.|++|+
T Consensus 99 -~~~~~~~~~h~~~~~~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~ 175 (318)
T 4ggc_A 99 -QKRLRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVN 175 (318)
T ss_dssp -TEEEEEEECCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred -ceeEEEecCccceEEEeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCccee
Confidence 345677889999998877654 4899999999999999876543 3333 5889999999999 999999999999999
Q ss_pred EEeCCCCe-----EEEeccCCCCeEEEEEeeCCCEE---EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 335 IWGVCEKR-----VVDWADVRDVISAICYIPDGKGF---IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 335 iwd~~~~~-----~~~~~~~~~~i~~i~~sp~g~~l---~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
+||+++++ ......+...|.++.++|++..+ ++++.++.|++||.......... . +...+..+.
T Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--~------~~~~v~~~~ 247 (318)
T 4ggc_A 176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--D------AHSQVCSIL 247 (318)
T ss_dssp EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--E------CSSCEEEEE
T ss_pred EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--c------ceeeeeeee
Confidence 99998764 23456677889999999977644 35667899999999876653321 1 236799999
Q ss_pred EcCCCCcEEEEE--eCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 407 FSRDESQRIMIT--SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 407 ~s~~~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
|+|++. .++++ +.|+.|++||+.+.........|...|++++|+|+|++|+||+.||+|+|||+.+.
T Consensus 248 ~~~~~~-~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 248 WSPHYK-ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EETTTT-EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eccccc-ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 999984 55544 37999999998866555555668999999999999999999999999999999763
No 106
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=1.3e-27 Score=252.58 Aligned_cols=203 Identities=15% Similarity=0.254 Sum_probs=164.2
Q ss_pred cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe-----------eeEee-cCC------------CCeEEEEEeeCC
Q 006909 266 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-----------CLNVF-DHH------------NYVTCVQFNPID 320 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~-----------~~~~~-~~~------------~~v~~~~~~p~~ 320 (626)
.|.+.|++++|+|++ +|++|+.||.|+|||+.+++ +...+ .|. ..|++++|+| +
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-Q 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-C
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-C
Confidence 468899999999998 99999999999999998776 34455 476 8899999999 7
Q ss_pred C--CEEEEEeCCCcEEEEeCCCCeEE-----------------------------------------EeccCCCCeEEEE
Q 006909 321 D--NYFISGSIDGKVRIWGVCEKRVV-----------------------------------------DWADVRDVISAIC 357 (626)
Q Consensus 321 ~--~~l~s~s~dg~v~iwd~~~~~~~-----------------------------------------~~~~~~~~i~~i~ 357 (626)
+ .+|++++.|++|++||+.++... ....|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 6 79999999999999998764431 1357889999999
Q ss_pred EeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeec-cccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce---
Q 006909 358 YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH-DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--- 433 (626)
Q Consensus 358 ~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~--- 433 (626)
|+|++++|++| .||.|++||+.........+... .....|...|++++|+|++..+|++++.|+.|++||++...
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99999999999 79999999998543333322111 12345678999999999975799999999999999987543
Q ss_pred ---eeeeecCCCC------------CeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 434 ---HKFKGLPKSG------------SQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 434 ---~~~~~~~~~~------------~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
..+.. +.. .|.+++|+|+|++|++++. +.|++||+..
T Consensus 264 ~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 264 RHSKLFEE--PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp TTCEEECC--C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred ceeeEecc--CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 33333 443 8999999999999999998 9999999986
No 107
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.9e-28 Score=256.46 Aligned_cols=280 Identities=11% Similarity=-0.007 Sum_probs=197.0
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc---ceeeeecCCCCCccC-C--C-CCeeeecCCC--CCCce----e
Q 006909 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA---ASCKSFTDDGGFGSN-A--K-EGKIKFGKKK--SSHVP----V 247 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~---~~~~~~~~~~~~~~~-~--~-~~~~~~~~~~--~~~~~----~ 247 (626)
..+|.+++|+|+|++|++++ ++.|++||+.++. ............... . . .......... ..... .
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 35789999999999777664 7899999999887 322211111100000 0 0 0000000000 00000 0
Q ss_pred ecCCccccccCCCceeeccCccceEEEEEcCCC-eE-EEEeCCCcEEEeccC--CCeeeEee---cCCCCeEEEEEeeCC
Q 006909 248 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVG--CNQCLNVF---DHHNYVTCVQFNPID 320 (626)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l-~s~s~d~~v~iwd~~--~~~~~~~~---~~~~~v~~~~~~p~~ 320 (626)
........ ...+.....+|.+.|++++|+|++ +| ++++.|++|++||+. +++++..+ .|...|.+++|+| +
T Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~ 160 (450)
T 2vdu_B 83 SIKRTAAK-VPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-D 160 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-T
T ss_pred cccccCcc-ccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-C
Confidence 00000000 011223445788899999999998 64 889999999999999 88888777 4778999999999 9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEE-----EeccCCCCeEEEEEeeC---CCEEEEEecCCcEEEEEcCCCceeeeEEeec
Q 006909 321 DNYFISGSIDGKVRIWGVCEKRVV-----DWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFH 392 (626)
Q Consensus 321 ~~~l~s~s~dg~v~iwd~~~~~~~-----~~~~~~~~i~~i~~sp~---g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~ 392 (626)
+.+|++|+.+|.|++|++.++... .+..|...|++++|+|+ +++|++|+.|+.|++||+.+.......
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---- 236 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW---- 236 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE----
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee----
Confidence 999999999999999999876644 45678899999999999 999999999999999999877653321
Q ss_pred cccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce--eeeeec-----------------------CCCCCeEE
Q 006909 393 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFKGL-----------------------PKSGSQMS 447 (626)
Q Consensus 393 ~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~-----------------------~~~~~v~~ 447 (626)
...|...|++++|+ ++ .+|++++.|+.|++||+.+.. ..+... .....+..
T Consensus 237 --~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 237 --LFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp --CCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred --ecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 12345899999999 76 799999999999999987543 333211 23457899
Q ss_pred EEEcCCCCEEEEEe-CCccEEEEEC
Q 006909 448 ASFTTTGKHIISIG-DDCRVYVWNY 471 (626)
Q Consensus 448 ~~~sp~g~~l~s~s-~dg~I~iwd~ 471 (626)
++|+|++++|++++ .|+.|++|++
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEe
Confidence 99999999999999 8999999999
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=4.4e-28 Score=255.64 Aligned_cols=240 Identities=24% Similarity=0.451 Sum_probs=197.2
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
....+.+.+|.+.|++++| ++++|++|+.||+|++||+.+
T Consensus 163 ~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-------------------------------------- 202 (435)
T 1p22_A 163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT-------------------------------------- 202 (435)
T ss_dssp CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS--------------------------------------
T ss_pred CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--------------------------------------
Confidence 3456678899999999999 788999999999999999987
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeee---Eee-cCCCCeEEEEEeeCCCCEEEE
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL---NVF-DHHNYVTCVQFNPIDDNYFIS 326 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~---~~~-~~~~~v~~~~~~p~~~~~l~s 326 (626)
...+..+.+|...|.+++|++ +.+++|+.|++|++||+.++... ..+ .|...|.+++| +++++++
T Consensus 203 -------~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s 271 (435)
T 1p22_A 203 -------GEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVS 271 (435)
T ss_dssp -------CCEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEE
T ss_pred -------CcEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEE
Confidence 344677789999999999975 59999999999999999887765 333 58899999999 5789999
Q ss_pred EeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909 327 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 327 ~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 405 (626)
|+.||.|++||+++++.+. +..|...|.++.+ +++++++|+.||.|++||+.++..... + ..|...|+++
T Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~-~------~~h~~~v~~~ 342 (435)
T 1p22_A 272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV-L------EGHEELVRCI 342 (435)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE-E------CCCSSCEEEE
T ss_pred EeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEE-E------eCCcCcEEEE
Confidence 9999999999999887654 5678899999988 478999999999999999998765322 2 2345789999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCcce---------eeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909 406 QFSRDESQRIMITSEDSKLRILDGVDVI---------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~ 475 (626)
+| ++ .++++++.||.|++||+.... .......|...|.+++| ++++|++++.||.|++||+.+..
T Consensus 343 ~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 343 RF--DN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EC--CS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred Ee--cC-CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 99 44 689999999999999965322 33334558889999999 78899999999999999998763
No 109
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.4e-29 Score=252.51 Aligned_cols=235 Identities=13% Similarity=0.131 Sum_probs=180.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909 184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 263 (626)
Q Consensus 184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (626)
.....+.+++++|++|+.||+|++||+.+++. +..
T Consensus 39 ~~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~---------------------------------------------~~~ 73 (343)
T 3lrv_A 39 ELNKSMYYDKWVCMCRCEDGALHFTQLKDSKT---------------------------------------------ITT 73 (343)
T ss_dssp EECSSSSEEEEEEEEEEETTEEEEEEESSSSC---------------------------------------------EEE
T ss_pred hhhhhhcCCCCEEEEECCCCcEEEEECCCCcE---------------------------------------------EEE
Confidence 33445567888999999999999999987432 233
Q ss_pred eccCccceEEEEEcCCCeEEEEeCCCcEEEeccC---------CCeeeEee--cCCCCeEEEEEee-CCCCEEEEEeCCC
Q 006909 264 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG---------CNQCLNVF--DHHNYVTCVQFNP-IDDNYFISGSIDG 331 (626)
Q Consensus 264 ~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~---------~~~~~~~~--~~~~~v~~~~~~p-~~~~~l~s~s~dg 331 (626)
+. ...|.++.|+|+ +++++.|++|++|+.. +++.+..+ .|...|.+++|+| .+++++++++.||
T Consensus 74 ~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg 149 (343)
T 3lrv_A 74 IT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRG 149 (343)
T ss_dssp EE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTC
T ss_pred Ee--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCC
Confidence 32 456777778887 9999999999999665 45545444 3667899999998 3578999999999
Q ss_pred cEEEEeCCCCeEEEec--cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 332 KVRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 332 ~v~iwd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
+|++||+++++..... .+...+.+++|+|+|.+|++|+.||.|++||+++.......+.. .|..+|++++|+|
T Consensus 150 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-----~h~~~v~~l~fs~ 224 (343)
T 3lrv_A 150 TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-----DEEAKIKEVKFAD 224 (343)
T ss_dssp CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-----CTTSCEEEEEECT
T ss_pred cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-----cCCCCEEEEEEeC
Confidence 9999999998876543 45567999999999999999999999999999988754222222 2458999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCcceeeeeecC---CCCCe--EEEEEcCCCCEEEEEeC-CccEEEEECCCC
Q 006909 410 DESQRIMITSEDSKLRILDGVDVIHKFKGLP---KSGSQ--MSASFTTTGKHIISIGD-DCRVYVWNYDEL 474 (626)
Q Consensus 410 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~---~~~~v--~~~~~sp~g~~l~s~s~-dg~I~iwd~~~~ 474 (626)
++ .+|++++ ++.|++||+++......... +...+ .+++|+|+|++|++++. |+.|++|++...
T Consensus 225 ~g-~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 225 NG-YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp TS-SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CC-CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 97 7899988 55999999875432211111 22233 46999999999999998 999999999765
No 110
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=246.92 Aligned_cols=252 Identities=17% Similarity=0.201 Sum_probs=192.8
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC--CCeeeEeec-CCCCeEEEEEeeCC--CCEEEEEeCCCcE
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFD-HHNYVTCVQFNPID--DNYFISGSIDGKV 333 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~--~~~~~~~~~-~~~~v~~~~~~p~~--~~~l~s~s~dg~v 333 (626)
++..+.+|...|++++|+|++ +|++|+.|+.|++||+. +++.+..+. |...|++++|+| + +++|++|+.||.|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKV 81 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEE
Confidence 467788999999999999998 89999999999999998 556666664 899999999987 5 8999999999999
Q ss_pred EEEeCCCCe---EEEeccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909 334 RIWGVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408 (626)
Q Consensus 334 ~iwd~~~~~---~~~~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 408 (626)
++||+.+++ ......|...|.+++|+|+ +++|++++.||.|++||+......... .. ..|...|++++|+
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~----~~~~~~v~~~~~~ 156 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-II----DAHAIGVNSASWA 156 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE-EE----ECCTTCEEEEEEC
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE-Ee----cCCCCceEEEEEc
Confidence 999999875 4456678999999999999 999999999999999999877543221 11 2235789999999
Q ss_pred C-------------CCCcEEEEEeCCCcEEEEeCCcce----eeeeecCCCCCeEEEEEcCC---CCEEEEEeCCccEEE
Q 006909 409 R-------------DESQRIMITSEDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTT---GKHIISIGDDCRVYV 468 (626)
Q Consensus 409 ~-------------~~~~~l~~~s~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~---g~~l~s~s~dg~I~i 468 (626)
| ++ .++++++.|+.|++||+.... .......|...|.+++|+|+ +++|++++.||.|++
T Consensus 157 ~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 157 PATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 235 (379)
T ss_dssp CCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred CccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence 9 45 799999999999999975322 22233458899999999999 899999999999999
Q ss_pred EECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccc
Q 006909 469 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 526 (626)
Q Consensus 469 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~ 526 (626)
||+.++..+...... ......+.+.+++|+|++..++..+.+ +.+.+|+.
T Consensus 236 wd~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~l~~~~~d---g~i~iw~~ 285 (379)
T 3jrp_A 236 WTQDNEQGPWKKTLL-----KEEKFPDVLWRASWSLSGNVLALSGGD---NKVTLWKE 285 (379)
T ss_dssp EEESSTTSCCEEEES-----SSSCCSSCEEEEEECSSSCCEEEEESS---SSEEEEEE
T ss_pred EeCCCCCccceeeee-----ccccCCCcEEEEEEcCCCCEEEEecCC---CcEEEEeC
Confidence 999875321111000 001123445566666666666554443 33455554
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-28 Score=256.26 Aligned_cols=228 Identities=13% Similarity=0.155 Sum_probs=182.3
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
+.+.+|.+.|++++|+|+| .++.+.+|+...
T Consensus 46 ~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~------------------------------------------ 76 (588)
T 2j04_A 46 KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQ------------------------------------------ 76 (588)
T ss_dssp SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS------------------------------------------
T ss_pred ceecCCCccEEEEEECCCC-------CcceEEEEeCCC------------------------------------------
Confidence 4557999999999999998 455555554332
Q ss_pred cccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCC-----CeEEEEEeeCCCCEEEEEe
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~s~s 328 (626)
.....+ +|...|.+++|+|+| .|++++.||+|++||..+ ++..+.|.. .|.+++|+| ++++|++|+
T Consensus 77 ----~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSP-DG~~LAsgs 148 (588)
T 2j04_A 77 ----NGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNP-IESSIVVGN 148 (588)
T ss_dssp ----SCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECS-SSSCEEEEE
T ss_pred ----ceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcC-CCCEEEEEc
Confidence 111222 457899999999998 899999999999999654 666655444 499999999 999999999
Q ss_pred CCCcEEEEeCCCCeE--------EEe----ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee--eEEeeccc
Q 006909 329 IDGKVRIWGVCEKRV--------VDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL--EKVDFHDR 394 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~--------~~~----~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~~~~ 394 (626)
.||+|++||+.++.+ ..+ .+|...|.+++|+|+| +++++.|+++++||+.+..... ..+.
T Consensus 149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~---- 222 (588)
T 2j04_A 149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ---- 222 (588)
T ss_dssp TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE----
T ss_pred CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec----
Confidence 999999999998752 333 5677899999999999 8889999999999998876421 1121
Q ss_pred cccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee-eeeecCCCCCeEEEEE--cCCCCEEEEEeCCccEEEEEC
Q 006909 395 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASF--TTTGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 395 ~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~--sp~g~~l~s~s~dg~I~iwd~ 471 (626)
..|...|.+++|+ | +.+++++ +++|++||...... .+. .+|...+..++| +|++..|++++.||+ ++|..
T Consensus 223 -~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 223 -NASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLK-TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp -CCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEE-CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred -ccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEE-cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 1234789999999 4 5888887 69999999886665 444 358999999999 999999999999999 99997
Q ss_pred C
Q 006909 472 D 472 (626)
Q Consensus 472 ~ 472 (626)
+
T Consensus 296 d 296 (588)
T 2j04_A 296 D 296 (588)
T ss_dssp S
T ss_pred c
Confidence 5
No 112
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=3.1e-28 Score=249.78 Aligned_cols=301 Identities=13% Similarity=0.145 Sum_probs=225.7
Q ss_pred CCCceeeccCccceEEEEEcCC---C-eEEEEeCCCcEEEeccCC-Ceee-Eee-cCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909 258 ESPLQELHGHKGDVLDLAWSNS---N-YLLSCSMDKTVRMWQVGC-NQCL-NVF-DHHNYVTCVQFNPIDDNYFISGSID 330 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~---~-~l~s~s~d~~v~iwd~~~-~~~~-~~~-~~~~~v~~~~~~p~~~~~l~s~s~d 330 (626)
...+..+.+|.+.|++++|+|+ + +|++|+.|+.|++||+.+ +..+ ..+ .|...|++++|+| ++++|++++.|
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d 107 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCD 107 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETT
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCC
Confidence 4556778899999999999998 4 899999999999999987 5554 444 5999999999999 99999999999
Q ss_pred CcEEEEeCCCCeEEEeccCCCCeEEEEE--eeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909 331 GKVRIWGVCEKRVVDWADVRDVISAICY--IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408 (626)
Q Consensus 331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~--sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 408 (626)
|.|++||+.+++......|...|.+++| +|++++|++++.||.|++||+++.+.... +..+ ..+.++.+.
T Consensus 108 g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~-------~~~~~~~~~ 179 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV-LQLP-------ERCYCADVI 179 (368)
T ss_dssp SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE-EECS-------SCEEEEEEE
T ss_pred CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE-EecC-------CCceEEEec
Confidence 9999999999999999999999999999 88999999999999999999988765332 2222 467777777
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCcceeeeee--cCCCCCeEEEEEcCCCCE----EEEEeCCccEEEEECCCCCCCCCCcc
Q 006909 409 RDESQRIMITSEDSKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKH----IISIGDDCRVYVWNYDELCFPSSKQK 482 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~sp~g~~----l~s~s~dg~I~iwd~~~~~~~~~~~~ 482 (626)
++ .+++++.++.+.+|+.......+.. ......+..+++.++... +++++.|+.|++|++......
T Consensus 180 ~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~----- 251 (368)
T 3mmy_A 180 YP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA----- 251 (368)
T ss_dssp TT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH-----
T ss_pred CC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc-----
Confidence 54 7888999999999998754433332 223455666666665554 999999999999999864110
Q ss_pred CCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCC
Q 006909 483 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKL 562 (626)
Q Consensus 483 ~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i 562 (626)
. ....+... . .. ........+...+.+++|+|||+++++++. |+.|
T Consensus 252 ~---~~~~~~~~--~-------~~---------------------~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~i 297 (368)
T 3mmy_A 252 K---DNFTFKCH--R-------SN---------------------GTNTSAPQDIYAVNGIAFHPVHGTLATVGS-DGRF 297 (368)
T ss_dssp H---HSEEEECS--E-------EC-------------------------CCCEEECCEEEEEECTTTCCEEEEET-TSCE
T ss_pred c---cceeeeee--e-------cc---------------------cccccccccccceEEEEEecCCCEEEEEcc-CCeE
Confidence 0 00000000 0 00 000001223345888999999999999988 7999
Q ss_pred CCCCcccCCCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeeecC
Q 006909 563 PLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNYG 621 (626)
Q Consensus 563 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~g 621 (626)
++||+.++ .+......+...+ .++++ +|.+|++||.|+..+.|+.+.
T Consensus 298 ~iwd~~~~-----------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 298 SFWDKDAR-----------TKLKTSEQLDQPISACCFNH-NGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEEETTTT-----------EEEEECCCCSSCEEEEEECT-TSSCEEEEECCCSTTCGGGCC
T ss_pred EEEECCCC-----------cEEEEecCCCCCceEEEECC-CCCeEEEEecccccccccccC
Confidence 99999987 2223333344333 35556 899999999999888887664
No 113
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=2.1e-28 Score=254.32 Aligned_cols=254 Identities=15% Similarity=0.149 Sum_probs=175.9
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
.+|.+.+....+++++.+||+|+.|++|+|||+.++....
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~---------------------------------------- 125 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIIT---------------------------------------- 125 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEE----------------------------------------
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccce----------------------------------------
Confidence 3577777777888889999999999999999998743221
Q ss_pred CCCceeeccCccceEEEEEcC--------CC-eEEEEeCCCcEEEeccCCCeeeE-eecCCCCeEEEEEeeCCCCEEEEE
Q 006909 258 ESPLQELHGHKGDVLDLAWSN--------SN-YLLSCSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~--------~~-~l~s~s~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~s~ 327 (626)
..++..+.||.+.|++++|+| ++ +|++|+.|++|+|||+.++.++. .+.|..+|.+++|+|.+.++|++|
T Consensus 126 ~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 205 (393)
T 4gq1_A 126 QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVG 205 (393)
T ss_dssp EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEec
Confidence 123456789999999999987 55 89999999999999998776554 557999999999999334689999
Q ss_pred eCCCcEEEEeCCCCeEEE--------------------------eccCCCCeEEEEEe-eCCCEEEEEecCCcEEEEEcC
Q 006909 328 SIDGKVRIWGVCEKRVVD--------------------------WADVRDVISAICYI-PDGKGFIVGSITGTCHFYKAS 380 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~--------------------------~~~~~~~i~~i~~s-p~g~~l~~g~~dg~i~i~d~~ 380 (626)
+.|++|++||+++++... ..+|...+.++.|+ |+++.+++++.|+++++||+.
T Consensus 206 ~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~ 285 (393)
T 4gq1_A 206 ERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF 285 (393)
T ss_dssp ETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-
T ss_pred CCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc
Confidence 999999999998765321 23466778899987 799999999999999999997
Q ss_pred CCceeeeEEeecc-----------ccccCCCCeEEEEEcC-CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEE
Q 006909 381 GNDLKLEKVDFHD-----------RKKTSGNKITGIQFSR-DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSA 448 (626)
Q Consensus 381 ~~~~~~~~~~~~~-----------~~~~~~~~i~~l~~s~-~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 448 (626)
............. .............|+| .+..++++|+.||.|++||..+.........|..+|.++
T Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sv 365 (393)
T 4gq1_A 286 ANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDF 365 (393)
T ss_dssp ------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEE
T ss_pred cCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEE
Confidence 6543221100000 0000011222333444 333567778899999999987654444444477899999
Q ss_pred EEcCCCCEEEEEeCCccEEEEECC
Q 006909 449 SFTTTGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 449 ~~sp~g~~l~s~s~dg~I~iwd~~ 472 (626)
+|+|||++||+++++| +.+|.+.
T Consensus 366 afspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 366 CWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEcCCCCEEEEEeCCC-eEEEEEe
Confidence 9999999999999766 6666654
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.2e-25 Score=233.32 Aligned_cols=252 Identities=11% Similarity=0.082 Sum_probs=193.1
Q ss_pred CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccceEE
Q 006909 194 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD 273 (626)
Q Consensus 194 ~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 273 (626)
.++++++.|+.|++||+.++ +.+..+.+|. .+.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~---------------------------------------------~~~~~~~~~~-~~~~ 36 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN---------------------------------------------KVTATIPVGS-NPMG 36 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT---------------------------------------------EEEEEEECSS-SEEE
T ss_pred EEEEEcCCCCEEEEEECCCC---------------------------------------------eEEEEeecCC-Ccce
Confidence 46888999999999999873 3344555554 5899
Q ss_pred EEEcCCC-eE-EEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEE-EEeCCCcEEEEeCCCCeEEEeccCC
Q 006909 274 LAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGKVRIWGVCEKRVVDWADVR 350 (626)
Q Consensus 274 l~~s~~~-~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~ 350 (626)
++|+|++ ++ ++++.|++|++||+.+++.+..+.+...+.+++|+| ++++++ +++.++.|++||+.+++......+.
T Consensus 37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~ 115 (391)
T 1l0q_A 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG 115 (391)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC
Confidence 9999998 45 677799999999999999999998777999999999 888775 5556799999999999988877777
Q ss_pred CCeEEEEEeeCCCEE-EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909 351 DVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 429 (626)
Q Consensus 351 ~~i~~i~~sp~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~ 429 (626)
..+.+++|+|+++.+ ++++.++.|++||+.+.+.... +.. ...+.+++|+|++..++++++.++.|++||+
T Consensus 116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~~-------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~ 187 (391)
T 1l0q_A 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT-VSV-------GRSPKGIAVTPDGTKVYVANFDSMSISVIDT 187 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EEC-------CSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE-Eec-------CCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 889999999999987 6777899999999987765322 221 1567999999998544477888999999998
Q ss_pred CcceeeeeecCCCCCeEEEEEcCCCCEEEEEe---CCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEe
Q 006909 430 VDVIHKFKGLPKSGSQMSASFTTTGKHIISIG---DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQ 501 (626)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~ 501 (626)
.+........ +...+.+++|+|++++|++++ .++.|++||+.++.............++.|+|+|..+.++
T Consensus 188 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s 261 (391)
T 1l0q_A 188 VTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVA 261 (391)
T ss_dssp TTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEE
T ss_pred CCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEE
Confidence 7654333322 456789999999999999888 6899999999876322111111122344555555554333
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-26 Score=261.49 Aligned_cols=207 Identities=18% Similarity=0.263 Sum_probs=171.7
Q ss_pred eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC--CCeeeEee-cCCCCeEEEEEeeCC--CCEEEEEeCCCcEEE
Q 006909 262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVF-DHHNYVTCVQFNPID--DNYFISGSIDGKVRI 335 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~--~~~~~~~~-~~~~~v~~~~~~p~~--~~~l~s~s~dg~v~i 335 (626)
..+.+|.+.|++++|+|++ +|++|+.||+|++||+. +++.+..+ .|...|++++|+| + +++|++|+.||+|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEE
Confidence 4677999999999999987 89999999999999998 45666666 4999999999998 6 899999999999999
Q ss_pred EeCCCCe---EEEeccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 336 WGVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 336 wd~~~~~---~~~~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
||+.+++ ......|...|++++|+|+ ++.+++|+.||.|++||+.+........ . ..|...|++++|+|.
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~-~----~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-I----DAHAIGVNSASWAPA 156 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE-E----ECCSSCEEEEEECCC
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE-e----ecCCCceEEEEecCc
Confidence 9999875 4456779999999999999 9999999999999999998774332211 1 223578999999994
Q ss_pred ------------CCcEEEEEeCCCcEEEEeCCcc----eeeeeecCCCCCeEEEEEcCC---CCEEEEEeCCccEEEEEC
Q 006909 411 ------------ESQRIMITSEDSKLRILDGVDV----IHKFKGLPKSGSQMSASFTTT---GKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 411 ------------~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp~---g~~l~s~s~dg~I~iwd~ 471 (626)
++.++++++.||.|++||+... ........|...|.+++|+|+ +++|++++.||.|++||+
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 1379999999999999997643 222333558899999999999 999999999999999999
Q ss_pred CCC
Q 006909 472 DEL 474 (626)
Q Consensus 472 ~~~ 474 (626)
.++
T Consensus 237 ~~~ 239 (753)
T 3jro_A 237 DNE 239 (753)
T ss_dssp SSS
T ss_pred CCC
Confidence 886
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=5.3e-26 Score=239.34 Aligned_cols=275 Identities=13% Similarity=0.068 Sum_probs=210.8
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
.+..| ..+.+++|+|++.++++++.|+.|++||+.+++...
T Consensus 118 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~-------------------------------------- 158 (433)
T 3bws_A 118 RFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR-------------------------------------- 158 (433)
T ss_dssp EEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEE--------------------------------------
T ss_pred EEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEee--------------------------------------
Confidence 34444 446699999988888888889999999998753321
Q ss_pred ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEE-EEeCCCc
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI-SGSIDGK 332 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~-s~s~dg~ 332 (626)
..+...+.+|...|.+++|++++ .+++++.|+.|++||+.+++.+..+. |...+.+++|+| +++.++ +++.|+.
T Consensus 159 --~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 235 (433)
T 3bws_A 159 --LSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISED 235 (433)
T ss_dssp --ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTE
T ss_pred --ecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCc
Confidence 01122456899999999999988 78899999999999999998888875 788999999999 888775 5557999
Q ss_pred EEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEe--------cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909 333 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS--------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 404 (626)
Q Consensus 333 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~ 404 (626)
|++||+++++..........+.+++|+|+|+.+++++ .||.|++||+.+.+.... ... ...+.+
T Consensus 236 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~~~-------~~~~~~ 307 (433)
T 3bws_A 236 ISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-IGP-------PGNKRH 307 (433)
T ss_dssp EEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-EEE-------EECEEE
T ss_pred EEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-ccC-------CCCcce
Confidence 9999999998887777777899999999999999988 488999999987754322 211 246889
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC---------------CccEEEE
Q 006909 405 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---------------DCRVYVW 469 (626)
Q Consensus 405 l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~---------------dg~I~iw 469 (626)
++|+|++..++++++.++.|++||..+....... .+...+.+++|+|+|++|++++. ||.|++|
T Consensus 308 ~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~ 386 (433)
T 3bws_A 308 IVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVI 386 (433)
T ss_dssp EEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEE
Confidence 9999998556677799999999998754433332 25678999999999999998876 5799999
Q ss_pred ECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccc
Q 006909 470 NYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL 512 (626)
Q Consensus 470 d~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~ 512 (626)
|+.++..... +.......+++|+|++..++..
T Consensus 387 d~~~~~~~~~-----------~~~~~~~~~~~~s~dg~~l~~~ 418 (433)
T 3bws_A 387 DTTTDTVKEF-----------WEAGNQPTGLDVSPDNRYLVIS 418 (433)
T ss_dssp ETTTTEEEEE-----------EECSSSEEEEEECTTSCEEEEE
T ss_pred ECCCCcEEEE-----------ecCCCCCceEEEcCCCCEEEEE
Confidence 9987632111 1112334566666666665543
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.3e-26 Score=240.85 Aligned_cols=248 Identities=13% Similarity=0.061 Sum_probs=193.0
Q ss_pred ccccccCcEEEEEEcCCCCEE-EEEeCCCcEEEEEcC--CCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 176 EIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVT--SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 176 ~l~~H~~~V~~l~fspdg~~L-atgs~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
...+|.+.|++++|+|+|++| |+|+.||.|+|||+. ++
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--------------------------------------- 137 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--------------------------------------- 137 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS---------------------------------------
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC---------------------------------------
Confidence 445899999999999999996 899999999999998 52
Q ss_pred cccccCCCceeec--cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE----ee-cCCCCeEEEEEeeCC---C
Q 006909 253 VFQIEESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN----VF-DHHNYVTCVQFNPID---D 321 (626)
Q Consensus 253 ~~~~~~~~~~~~~--~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~----~~-~~~~~v~~~~~~p~~---~ 321 (626)
..+..+. .|...|.+++|+|++ +|++++.++.|++|++.++.... .+ .|...|++++|+| + +
T Consensus 138 ------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~ 210 (450)
T 2vdu_B 138 ------NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGH 210 (450)
T ss_dssp ------SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSC
T ss_pred ------ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCC
Confidence 2344444 577899999999998 89999999999999998877553 33 5889999999999 8 8
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEE--eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccc-----
Q 006909 322 NYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR----- 394 (626)
Q Consensus 322 ~~l~s~s~dg~v~iwd~~~~~~~~--~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~----- 394 (626)
.+|++|+.|++|++||+.++.... ..+|...|.+++|+ ++++|++++.|+.|++||+.+++.... +.....
T Consensus 211 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~~~ 288 (450)
T 2vdu_B 211 QFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLST-FDYNSLIKPYL 288 (450)
T ss_dssp EEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEE-EECHHHHGGGC
T ss_pred cEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeee-ecchhhhhhhh
Confidence 899999999999999999877553 44789999999999 999999999999999999998775432 221100
Q ss_pred --------------cccCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEeC--Ccc---eeeeeecCCCCCeEEEEEcCCC
Q 006909 395 --------------KKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDG--VDV---IHKFKGLPKSGSQMSASFTTTG 454 (626)
Q Consensus 395 --------------~~~~~~~i~~l~~s~~~~~~l~~~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~sp~g 454 (626)
.......|.+++|+|++ .++++++ .++.|++|++ ... ........+ ..|.+++|+|++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~ 366 (450)
T 2vdu_B 289 NDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE 366 (450)
T ss_dssp CTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred hhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc
Confidence 00224679999999997 6788887 8999999998 322 222222224 789999999965
Q ss_pred CEEEEEeC------CccEEEEECCC
Q 006909 455 KHIISIGD------DCRVYVWNYDE 473 (626)
Q Consensus 455 ~~l~s~s~------dg~I~iwd~~~ 473 (626)
.++++++. +..|.+|.+..
T Consensus 367 ~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 367 FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEEecccCCCCCCcceEEEEEEc
Confidence 44433332 45588887754
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=3e-26 Score=234.66 Aligned_cols=197 Identities=11% Similarity=0.106 Sum_probs=144.4
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEE-EEEeCCCcEEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGSIDGKVRIW 336 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~s~dg~v~iw 336 (626)
.++..+.+|...|++++|+|++ +|++|+.+ .+++||+.+++......+. .+..+++.+ +++.+ ++++.|++|++|
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR-HLSKVRMLH-RTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS-CCCEEEECT-TSSEEEEECSSTTEEEEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC-CeEEEEEcC-CCCEEEEEECCccEEEEE
Confidence 4566678899999999999998 66666655 5899999988776655433 477888888 66666 567788999999
Q ss_pred eCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCC-ceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 337 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN-DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 337 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
|+.+++.+....+...|.+++++++. ++++ .++.|++||+.+. +.. ..+.. +...+++++ .++
T Consensus 87 d~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~-~~~~~---------~~~~~~~s~---~~l 150 (355)
T 3vu4_A 87 DDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRI-TDDIR---------FGGVCEFSN---GLL 150 (355)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBS-SCCEE---------EEEEEEEET---TEE
T ss_pred ECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceee-EEecc---------CCceEEEEc---cEE
Confidence 99999988877788899999998864 4443 4889999999887 332 21111 233456666 245
Q ss_pred EE--EeCCCcEEEEeCCcce----------------eeeeecCCCCCeEEEEEcCCCCEEEEEeCCcc-EEEEECCCC
Q 006909 416 MI--TSEDSKLRILDGVDVI----------------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCR-VYVWNYDEL 474 (626)
Q Consensus 416 ~~--~s~dg~i~iwd~~~~~----------------~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~-I~iwd~~~~ 474 (626)
++ ++.||.|++||+.... .......|...|.+++|+|+|++|++|+.|++ |++||+.++
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~ 228 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG 228 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 55 6889999999987532 02333458999999999999999999999998 999999875
No 119
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=3.3e-26 Score=235.19 Aligned_cols=198 Identities=15% Similarity=0.163 Sum_probs=160.4
Q ss_pred ccccCcEEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 178 QAHKGCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 178 ~~H~~~V~~l~fspdg~~Latgs--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
..+...+.+++|||||++||+|+ .|++|+|||+.++
T Consensus 130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~------------------------------------------ 167 (365)
T 4h5i_A 130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL------------------------------------------ 167 (365)
T ss_dssp CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT------------------------------------------
T ss_pred CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC------------------------------------------
Confidence 35667799999999999887554 7899999999873
Q ss_pred ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
.++..+ .|...|.+++|+|++ +|++++ ++.+++|+..++..+... .|...|.+++|+| ++.++++++.|+
T Consensus 168 ---~~~~~~-~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~ 241 (365)
T 4h5i_A 168 ---TEKFEI-ETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKK 241 (365)
T ss_dssp ---EEEEEE-ECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESS
T ss_pred ---cEEEEe-CCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCC
Confidence 223444 377889999999998 666666 455677777666655432 4788999999999 999999999887
Q ss_pred ----cEEEEeCCCCeE-----EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909 332 ----KVRIWGVCEKRV-----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 402 (626)
Q Consensus 332 ----~v~iwd~~~~~~-----~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i 402 (626)
.+++|++..... .....|...|++++|+|+|++||+|+.|++|+|||+.+.+..... ...|...|
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~------~~gH~~~V 315 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF------KQAHSFAI 315 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE------TTSSSSCE
T ss_pred cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe------cCcccCCE
Confidence 688898876543 345678899999999999999999999999999999987653321 23456899
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 006909 403 TGIQFSRDESQRIMITSEDSKLRILDGV 430 (626)
Q Consensus 403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~ 430 (626)
++++|+||| ++|++++.|++|+|||+.
T Consensus 316 ~~v~fSpdg-~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 316 TEVTISPDS-TYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EEEEECTTS-CEEEEEETTSEEEEEECC
T ss_pred EEEEECCCC-CEEEEEeCCCeEEEEEcC
Confidence 999999998 799999999999999975
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=1.4e-25 Score=236.15 Aligned_cols=255 Identities=13% Similarity=0.149 Sum_probs=189.8
Q ss_pred eeeccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCC----------CeeeEee-cCCCCeEEEEEeeCCCC-EEEEE
Q 006909 262 QELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGC----------NQCLNVF-DHHNYVTCVQFNPIDDN-YFISG 327 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~----------~~~~~~~-~~~~~v~~~~~~p~~~~-~l~s~ 327 (626)
....+|.+.|++++|+|+ + +|++++.||.|++||+.+ ...+..+ .|...|.+++|+| ++. +|++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNGYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT-TSTTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC-CCCCeEEEE
Confidence 445679999999999997 4 899999999999999976 4555555 5889999999999 666 99999
Q ss_pred eCCCcEEEEeCCCCe--------EEEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCc--eeeeEEeeccccc
Q 006909 328 SIDGKVRIWGVCEKR--------VVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGND--LKLEKVDFHDRKK 396 (626)
Q Consensus 328 s~dg~v~iwd~~~~~--------~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~~~~~~ 396 (626)
+.||.|++||+..+. ...+..|...|.+++|+| ++..|++++.||.|++||++... .....+.
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~------ 274 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD------ 274 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE------
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee------
Confidence 999999999998732 234568889999999999 77899999999999999998763 2222222
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCCC-EEEEEeCCccEEEEECCCC
Q 006909 397 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 397 ~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s~dg~I~iwd~~~~ 474 (626)
.|...|++++|+|++..++++++.||.|++||++.. ........|...|.+++|+|+++ +|++++.|+.|+|||+...
T Consensus 275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 345789999999998668999999999999998752 22222334788999999999995 6999999999999999873
Q ss_pred CCCCCC---ccCCccceee-eccCCcEEEEecCCCCc-ccccccCCCccccCccccc
Q 006909 475 CFPSSK---QKNSVRSCEH-FFSEGVSVAVQWPGIGT-EQKSLCSSSLRDCSQKWDN 526 (626)
Q Consensus 475 ~~~~~~---~~~~~~~~~~-~~~~g~~~av~~s~~~~-~l~~~~~~~~~~~~~~w~~ 526 (626)
...... .......... -.+.+.+..++|+|++. .+++.+.+ +.+.+|+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d---g~i~iw~~ 408 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED---NIMQVWQM 408 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT---SEEEEEEE
T ss_pred ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC---CCEEEeEc
Confidence 211100 0000001111 12244577888888887 44444433 34566665
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=2.3e-26 Score=238.97 Aligned_cols=208 Identities=14% Similarity=0.120 Sum_probs=141.8
Q ss_pred cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEe-----e-cCCCCeEEEEEee-------CCCCEEEEEeCCC
Q 006909 266 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-----F-DHHNYVTCVQFNP-------IDDNYFISGSIDG 331 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~-----~-~~~~~v~~~~~~p-------~~~~~l~s~s~dg 331 (626)
.|...+....+.+++ +|++++.|++|+|||+.++..... + +|.+.|++++|+| .++++|++|+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 444455545555555 799999999999999998876542 2 4999999999987 2678999999999
Q ss_pred cEEEEeCCCC-eEEEeccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeec-----------------
Q 006909 332 KVRIWGVCEK-RVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFH----------------- 392 (626)
Q Consensus 332 ~v~iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~----------------- 392 (626)
+|+|||+.++ .+.....|...+.+++|+|++. +|++|+.||+|++||+.+...........
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 9999999765 4566788999999999999874 79999999999999998765433211100
Q ss_pred -cccccCCCCeEEEEEc-CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCC------------------CCeEEEEEcC
Q 006909 393 -DRKKTSGNKITGIQFS-RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS------------------GSQMSASFTT 452 (626)
Q Consensus 393 -~~~~~~~~~i~~l~~s-~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------------------~~v~~~~~sp 452 (626)
.....+...+.++.|+ |++ ..+++++.|+++++||+...........+. .......|+|
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -----CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred eeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence 0112456788899987 676 799999999999999975322111111111 1222334444
Q ss_pred --CCCEEEEEeCCccEEEEECCCC
Q 006909 453 --TGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 453 --~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
++.++++|+.||+|++||+.++
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~ 349 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEK 349 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCT
T ss_pred CCCCEEEEEECCCCEEEEEECCCC
Confidence 4457788889999999999876
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=1.2e-24 Score=225.64 Aligned_cols=244 Identities=14% Similarity=0.132 Sum_probs=194.3
Q ss_pred cccccccccCcEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~L-atgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
..+.+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+++
T Consensus 24 ~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~------------------------------------- 65 (391)
T 1l0q_A 24 VTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN------------------------------------- 65 (391)
T ss_dssp EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-------------------------------------
T ss_pred EEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCe-------------------------------------
Confidence 344555565 48999999999977 677789999999998732
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCC-eEE-EEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEE-EEEe
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGS 328 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~-s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~s 328 (626)
.+..+..|. .+.+++|+|++ +|+ +++.++.|++||+.+++.+..+.+...+.+++|+| +++.+ ++++
T Consensus 66 --------~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~ 135 (391)
T 1l0q_A 66 --------VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNN 135 (391)
T ss_dssp --------EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEET
T ss_pred --------EEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECC-CCCEEEEEeC
Confidence 234444444 89999999987 554 55577999999999999999888888899999999 88876 7888
Q ss_pred CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEE-EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE
Q 006909 329 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 407 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 407 (626)
.++.|++||+.+++..........+.+++|+|+++.+ ++++.++.|++||+.+..... .+. +...+.+++|
T Consensus 136 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~-------~~~~~~~~~~ 207 (391)
T 1l0q_A 136 GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID-TVK-------VEAAPSGIAV 207 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEE-------CSSEEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE-EEe-------cCCCccceEE
Confidence 8999999999999888777767788999999999988 567788999999998875432 221 1257899999
Q ss_pred cCCCCcEEEEEe---CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEE-EEEeCCccEEEEECCCC
Q 006909 408 SRDESQRIMITS---EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 408 s~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~s~s~dg~I~iwd~~~~ 474 (626)
+|++ .++++++ .++.|++||+.+......... ...+.+++|+|++++| ++++.|+.|++||+.++
T Consensus 208 ~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 208 NPEG-TKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp CTTS-SEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCCC-CEEEEEecCcCCCcEEEEECCCCeEEEEEec-CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 9998 5677666 789999999875543333322 3457899999999988 56788999999999876
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=7.9e-25 Score=230.35 Aligned_cols=242 Identities=10% Similarity=0.077 Sum_probs=201.0
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
.+.+|.+.|++++|+|+++++++++.|+.|++||+.+
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~------------------------------------------- 200 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT------------------------------------------- 200 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-------------------------------------------
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-------------------------------------------
Confidence 4668999999999999999999999999999999986
Q ss_pred ccCCCceeeccCccceEEEEEcCCC-eE-EEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe-----
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----- 328 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s----- 328 (626)
...+..+..|...+.+++|+|++ .+ ++++.|+.|++||+.+++.+..+.+...+.+++|+| +++++++++
T Consensus 201 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 201 --LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASN 277 (433)
T ss_dssp --CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCT
T ss_pred --ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCc
Confidence 33456667888999999999987 55 455689999999999999998888778899999999 999999888
Q ss_pred ---CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEE-EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909 329 ---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 404 (626)
Q Consensus 329 ---~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~ 404 (626)
.|+.|++||+.+++......+...+.+++|+|+++.+ ++++.++.|++||+.+.+... .+. +...+.+
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~-~~~-------~~~~~~~ 349 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK-SIP-------VFDKPNT 349 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE-EEE-------CSSSEEE
T ss_pred cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE-Eec-------CCCCCCe
Confidence 4889999999999888877777789999999999765 556889999999998765432 222 1367899
Q ss_pred EEEcCCCCcEEEEEeC---------------CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC-CccEEE
Q 006909 405 IQFSRDESQRIMITSE---------------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYV 468 (626)
Q Consensus 405 l~~s~~~~~~l~~~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~i 468 (626)
++|+|+| .++++++. ||.|++||..+........ ....+.+++|+|+|++|++++. |+.|++
T Consensus 350 ~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 350 IALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-AGNQPTGLDVSPDNRYLVISDFLDHQIRV 427 (433)
T ss_dssp EEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred EEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-CCCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence 9999998 56777665 5799999987544333332 3457899999999999998875 999999
Q ss_pred EECCC
Q 006909 469 WNYDE 473 (626)
Q Consensus 469 wd~~~ 473 (626)
|++++
T Consensus 428 ~~~~~ 432 (433)
T 3bws_A 428 YRRDG 432 (433)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 99874
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-25 Score=229.22 Aligned_cols=242 Identities=10% Similarity=0.069 Sum_probs=183.7
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc-CC
Q 006909 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE-ES 259 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 259 (626)
.+.|.++.|+|+ +++|+.|++|++|+...... +++.. ..
T Consensus 76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~-------------------------------------~~~~~~~~ 115 (343)
T 3lrv_A 76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQIT-------------------------------------ILDSKTNK 115 (343)
T ss_dssp EECCCTTCCCCS---EEEECSTTEEEEEETTTEEE-------------------------------------EEETTTCC
T ss_pred cCCceeeeeCCc---eEEecCCCeEEEEEccCceE-------------------------------------EeecCCcc
Confidence 456788888888 99999999999999875100 00111 11
Q ss_pred Cceee-ccCccceEEEEEcC--CC-eEEEEeCCCcEEEeccCCCeeeEee--cCCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909 260 PLQEL-HGHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKV 333 (626)
Q Consensus 260 ~~~~~-~~h~~~V~~l~~s~--~~-~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~v 333 (626)
.+..+ .+|...|.+++|+| ++ ++++++.|++|++||+.+++++... .+...|.+++|+| ++.+|++|+.||.|
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i 194 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGIL 194 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCE
T ss_pred eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEE
Confidence 12333 36778999999999 77 8999999999999999999987766 3556899999999 99999999999999
Q ss_pred EEEeCCCCeEE--Eecc-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe--EEEEEc
Q 006909 334 RIWGVCEKRVV--DWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI--TGIQFS 408 (626)
Q Consensus 334 ~iwd~~~~~~~--~~~~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i--~~l~~s 408 (626)
++||+++++.. .+.. |...|++++|+|+|.+|++++ ++.|++||++..........+.. +...+ .+++|+
T Consensus 195 ~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 269 (343)
T 3lrv_A 195 DVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI----PEFKTGTVTYDID 269 (343)
T ss_dssp EEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC---------CCEEEEEC
T ss_pred EEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc----ccccccceEEEEC
Confidence 99999988755 5566 899999999999999999999 55999999988765322111110 11222 579999
Q ss_pred CCCCcEEEEEeC-CCcEEEEeCCcceeeeeecCCCCCeEEEEEcC---CCCEEEEEeCCccEEEEECCC
Q 006909 409 RDESQRIMITSE-DSKLRILDGVDVIHKFKGLPKSGSQMSASFTT---TGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 409 ~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~s~s~dg~I~iwd~~~ 473 (626)
|+| .+|++++. |+.|++|+..+....+.. .++..+.|++ +++.+++++.|+.+.++-...
T Consensus 270 ~~g-~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 270 DSG-KNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp TTS-SEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred CCC-CEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 998 78999888 999999997544333332 4567788888 889999999999999886543
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=1.4e-24 Score=213.32 Aligned_cols=198 Identities=14% Similarity=0.089 Sum_probs=141.5
Q ss_pred cCccceEEEEEcCCCeEEEEe---CCCcEEEecc-CCCeeeEee-cCCCCeEEEEEeeC--CCCEEEEEeCCCcEEEEeC
Q 006909 266 GHKGDVLDLAWSNSNYLLSCS---MDKTVRMWQV-GCNQCLNVF-DHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGV 338 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~~l~s~s---~d~~v~iwd~-~~~~~~~~~-~~~~~v~~~~~~p~--~~~~l~s~s~dg~v~iwd~ 338 (626)
+|...|..+ +++.+++++ .|+.|++|++ .+++.+..+ .|...++.++|+|. ++.+|++|+.|++|+|||+
T Consensus 134 g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl 210 (356)
T 2w18_A 134 GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL 210 (356)
T ss_dssp EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET
T ss_pred CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC
Confidence 455555554 567666654 4999999999 447776655 48888888888874 6699999999999999999
Q ss_pred CCCeEEEec-cC---CCCeEEEEEeeCCCEE------------EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909 339 CEKRVVDWA-DV---RDVISAICYIPDGKGF------------IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 402 (626)
Q Consensus 339 ~~~~~~~~~-~~---~~~i~~i~~sp~g~~l------------~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i 402 (626)
.+++.+... .+ ...+.+++|+|+|+++ ++|+.|++|++||..++..... ..... ..+|...+
T Consensus 211 ~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v-~~~~~-p~Gh~~~~ 288 (356)
T 2w18_A 211 KTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV-MLYCL-PPGQAGRF 288 (356)
T ss_dssp TTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEE-EEECC-CTTCCCCE
T ss_pred CCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE-EEeec-cCCCccee
Confidence 999876644 33 3467888999999876 5678899999999988765422 11110 11223344
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeE-EEEEcCCCCEEEEEeCCccEEEEEC
Q 006909 403 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM-SASFTTTGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~s~s~dg~I~iwd~ 471 (626)
.+..++ + .++++++.|++|+|||+.+........+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 289 lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 289 LEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EccccC--C-CEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 444444 4 5899999999999999886554444444655544 6899999999999999999999996
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=2.5e-24 Score=225.00 Aligned_cols=304 Identities=11% Similarity=0.041 Sum_probs=207.9
Q ss_pred cCcEEEEEEcCCCC-EEEEEe----CCC----cEEEEEc--CCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 181 KGCIWTLKFSPDGR-YLASGG----EDG----VVRIWHV--TSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 181 ~~~V~~l~fspdg~-~Latgs----~Dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
...|...+|++.|. ++++|+ .|| +|+|||+ .+++...
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~-------------------------------- 109 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA-------------------------------- 109 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE--------------------------------
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe--------------------------------
Confidence 34577778888775 666876 467 8999999 7643210
Q ss_pred CCccccccCCCceeeccCccceEEEEEcC---------------CCeEEEEeCC------CcEEEeccCCCeeeEeecCC
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSN---------------SNYLLSCSMD------KTVRMWQVGCNQCLNVFDHH 308 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~---------------~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~~ 308 (626)
...+.+|...+..+++++ ++.++.++.+ +.|++||+..+.......|.
T Consensus 110 -----------~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~ 178 (415)
T 2hqs_A 110 -----------QNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP 178 (415)
T ss_dssp -----------EEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES
T ss_pred -----------eeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCC
Confidence 134566776666666653 4466666654 79999999865555555688
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCC---cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEE-EEecCCc--EEEEEcCCC
Q 006909 309 NYVTCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGT--CHFYKASGN 382 (626)
Q Consensus 309 ~~v~~~~~~p~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~-~g~~dg~--i~i~d~~~~ 382 (626)
..+.+++|+| +++.|++++.++ .|++||+.+++...+..+...+.+++|+|+|+.|+ +++.++. |++||+.++
T Consensus 179 ~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~ 257 (415)
T 2hqs_A 179 QPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 257 (415)
T ss_dssp SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence 9999999999 999999999885 99999999999888888888999999999999888 5666654 999999876
Q ss_pred ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC-CC--cEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEE
Q 006909 383 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-DS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS 459 (626)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 459 (626)
... .+ ..+...+.+++|+|+| ++|++++. ++ .|++||....... ....+...+..++|+|+|++|++
T Consensus 258 ~~~--~l------~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~ 327 (415)
T 2hqs_A 258 QIR--QV------TDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVM 327 (415)
T ss_dssp CEE--EC------CCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEE
T ss_pred CEE--eC------cCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEE
Confidence 542 11 1234679999999998 56776665 45 6777787654321 12225567889999999999998
Q ss_pred EeCC---ccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCC-CCcccC
Q 006909 460 IGDD---CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET-APWIRD 535 (626)
Q Consensus 460 ~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~-~~~~~~ 535 (626)
++.+ ..|++||+.++......... ......|+|+|..++.+-..++ ...+..|+.... ...+..
T Consensus 328 ~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~-----------~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 328 VSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGM-----------GSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp EEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETT-----------EEEEEEEETTSCCEEECCC
T ss_pred EECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCC-----------ccEEEEEECCCCcEEEeeC
Confidence 8764 68999999886332111111 2333445555554444332221 122333333211 123455
Q ss_pred CCcccCCccccCCCC
Q 006909 536 SERFSLGSWFSNDGP 550 (626)
Q Consensus 536 ~~~~~~~~~~s~dg~ 550 (626)
+...+.+++|+|.-.
T Consensus 396 ~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 396 TDGQVKFPAWSPYLH 410 (415)
T ss_dssp SSSEEEEEEECCCCC
T ss_pred CCCCCcCCccccccc
Confidence 666788889988754
No 127
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=4.7e-24 Score=249.19 Aligned_cols=371 Identities=10% Similarity=-0.014 Sum_probs=251.2
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
+.+.+|.+.+.++.|+++ .++++++.||.++||.+...
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~----------------------------------------- 234 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLD----------------------------------------- 234 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETT-----------------------------------------
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCC-----------------------------------------
Confidence 445789999999999998 67778888999999987531
Q ss_pred cccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec------------CCCCeEEEEEe-eCC
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD------------HHNYVTCVQFN-PID 320 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~------------~~~~v~~~~~~-p~~ 320 (626)
......+..|. .+..++|+|+| .|+++ .++.|.+||+...... .+. |...+.+++|+ | +
T Consensus 235 ---g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~p-d 307 (1045)
T 1k32_A 235 ---GKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPL-D 307 (1045)
T ss_dssp ---SCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEEC-G
T ss_pred ---CCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCC-C
Confidence 12233444444 35677999998 56665 5899999999544433 332 23368999999 9 9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEeccCCC-CeEEEEEeeCCCEEEEEecCCcEE-EEEcCCCceeeeEEeeccccccC
Q 006909 321 DNYFISGSIDGKVRIWGVCEKRVVDWADVRD-VISAICYIPDGKGFIVGSITGTCH-FYKASGNDLKLEKVDFHDRKKTS 398 (626)
Q Consensus 321 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~i~~i~~sp~g~~l~~g~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~ 398 (626)
++.+++++ ++.|.+|++.++.......+.. .+..++|+ +|+.+++++.++.+. +|++.+..... +. .+
T Consensus 308 G~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~--l~------~~ 377 (1045)
T 1k32_A 308 GDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK--FE------EN 377 (1045)
T ss_dssp GGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE--CC------CC
T ss_pred CCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE--ec------CC
Confidence 99998888 7899999999988887777777 89999999 999999999888888 88987764321 11 23
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC----------ccEEE
Q 006909 399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD----------CRVYV 468 (626)
Q Consensus 399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d----------g~I~i 468 (626)
...+..++|+|+| ++|++++.++.|++||+.+.........|...+..++|+|||++|++++.+ +.|++
T Consensus 378 ~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 378 LGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp CCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred ccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 4689999999998 789999999999999987544333333477888999999999999988764 49999
Q ss_pred EECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCc----------------cccC-----------
Q 006909 469 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL----------------RDCS----------- 521 (626)
Q Consensus 469 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~----------------~~~~----------- 521 (626)
||+.++................|+|+|..++.....++...+....... ....
T Consensus 457 ~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1045)
T 1k32_A 457 YDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE 536 (1045)
T ss_dssp EETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCC
T ss_pred EECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccc
Confidence 9998763221111222233456777777666554433322221110000 0000
Q ss_pred -ccccc--c-CCCCcccCCCcccCCccccCCCCcccc------------cCCCCCCCCCCCcccCCCCCCCChhhHHHHh
Q 006909 522 -QKWDN--L-ETAPWIRDSERFSLGSWFSNDGPCRGS------------ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQ 585 (626)
Q Consensus 522 -~~w~~--~-~~~~~~~~~~~~~~~~~~s~dg~~l~s------------~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 585 (626)
..|+. . .....+..+...+..++++|||+++++ .......|.+||+.++. ...
T Consensus 537 ~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~-----------~~~ 605 (1045)
T 1k32_A 537 AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-----------VTE 605 (1045)
T ss_dssp CCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC-----------EEE
T ss_pred cccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCc-----------EEE
Confidence 00111 0 011122234445678899999986663 11112467778887762 111
Q ss_pred hhccCCccccccccccceEEEEecCCceEeeeeec
Q 006909 586 QCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY 620 (626)
Q Consensus 586 ~~~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~~ 620 (626)
+. ......++++ ||+.|++++.| .|++|+.-
T Consensus 606 l~--~~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~ 636 (1045)
T 1k32_A 606 VK--NNLTDLRLSA-DRKTVMVRKDD-GKIYTFPL 636 (1045)
T ss_dssp EE--EEEEEEEECT-TSCEEEEEETT-SCEEEEES
T ss_pred ee--cCcceEEECC-CCCEEEEEcCC-cEEEEeCc
Confidence 11 1122345666 89999999877 79999974
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.3e-23 Score=219.58 Aligned_cols=264 Identities=12% Similarity=0.108 Sum_probs=201.0
Q ss_pred cccccccCcEEEEEEcC--------------CCCEEEEEeCC------CcEEEEEcCCCcceeeeecCCCCCccCCCCCe
Q 006909 175 QEIQAHKGCIWTLKFSP--------------DGRYLASGGED------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 234 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fsp--------------dg~~Latgs~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (626)
..+.+|...+..+++++ .+..++.++.+ +.|++||+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g---------------------- 168 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG---------------------- 168 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS----------------------
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC----------------------
Confidence 45677888887777765 25666666654 7999999864
Q ss_pred eeecCCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCC---cEEEeccCCCeeeEeecCCCC
Q 006909 235 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNY 310 (626)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~---~v~iwd~~~~~~~~~~~~~~~ 310 (626)
.....+.+|...|.+++|+|+| .|++++.++ .|++||+.+++......+...
T Consensus 169 ------------------------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~ 224 (415)
T 2hqs_A 169 ------------------------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH 224 (415)
T ss_dssp ------------------------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC
T ss_pred ------------------------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCc
Confidence 2356677899999999999998 888888875 999999999988776678889
Q ss_pred eEEEEEeeCCCCEEE-EEeCCCc--EEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CC--cEEEEEcCCCce
Q 006909 311 VTCVQFNPIDDNYFI-SGSIDGK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDL 384 (626)
Q Consensus 311 v~~~~~~p~~~~~l~-s~s~dg~--v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg--~i~i~d~~~~~~ 384 (626)
+.+++|+| +++.|+ +++.++. |++||+.+++...+..+...+.+++|+|+|++|++++. ++ .|.+||+.++..
T Consensus 225 ~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~ 303 (415)
T 2hqs_A 225 NGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP 303 (415)
T ss_dssp EEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred ccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence 99999999 999877 6666654 99999999988888888899999999999999998886 45 677778877653
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 006909 385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG 461 (626)
Q Consensus 385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s 461 (626)
. .+.. +...+.+++|+|+| ++|++++.+ ..|++||+.+..... ...+ ..+.+++|+|+|++|++++
T Consensus 304 ~--~l~~------~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~-~~~~~~~~spdg~~l~~~s 372 (415)
T 2hqs_A 304 Q--RITW------EGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQV-LSST-FLDETPSLAPNGTMVIYSS 372 (415)
T ss_dssp E--ECCC------SSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCEEE-CCCS-SSCEEEEECTTSSEEEEEE
T ss_pred E--EEec------CCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCEEE-ecCC-CCcCCeEEcCCCCEEEEEE
Confidence 2 1111 23578899999998 567666653 589999987543322 2223 3889999999999999988
Q ss_pred CCc---cEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCc
Q 006909 462 DDC---RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT 507 (626)
Q Consensus 462 ~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~ 507 (626)
.++ .|++||+.+...... ..+++.+..++|+|-..
T Consensus 373 ~~~~~~~l~~~d~~g~~~~~l-----------~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 373 SQGMGSVLNLVSTDGRFKARL-----------PATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EETTEEEEEEEETTSCCEEEC-----------CCSSSEEEEEEECCCCC
T ss_pred cCCCccEEEEEECCCCcEEEe-----------eCCCCCCcCCccccccc
Confidence 776 799999876421111 12346677888887654
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=1.1e-23 Score=207.02 Aligned_cols=215 Identities=11% Similarity=0.030 Sum_probs=151.9
Q ss_pred ccCcEEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 180 HKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 180 H~~~V~~l~fspd----g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
|.+.|++++|+|| ++++++++.+ +++|++.+++........ .+..++++....
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g--------~d~~V~~~~~s~------------- 166 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTL--------SDQQVEVMTFAE------------- 166 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSS--------TTCEEEEEEECT-------------
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccC--------CCCcEEEEEECC-------------
Confidence 5668999999999 8899998854 788888654432221110 122222221110
Q ss_pred ccCCCceeeccCccceEEEEEcC---CC-eEEEEeCCCcEEEeccCCCeeeEeec-C---CCCeEEEEEeeCCCCEE---
Q 006909 256 IEESPLQELHGHKGDVLDLAWSN---SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-H---HNYVTCVQFNPIDDNYF--- 324 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~---~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~---~~~v~~~~~~p~~~~~l--- 324 (626)
.++.+..+.+|...++.++|++ ++ .|++++.|++|+|||+.++++++++. | ...+.+++|+| ++.++
T Consensus 167 -dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~ 244 (356)
T 2w18_A 167 -DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVL 244 (356)
T ss_dssp -TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEE
T ss_pred -CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEe
Confidence 1344567778999999999998 44 89999999999999999999999985 3 34688889999 88876
Q ss_pred ---------EEEeCCCcEEEEeCCCCeEEEec------cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEE
Q 006909 325 ---------ISGSIDGKVRIWGVCEKRVVDWA------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV 389 (626)
Q Consensus 325 ---------~s~s~dg~v~iwd~~~~~~~~~~------~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~ 389 (626)
++|+.|++|++||..+++.+... +|...+. ..+.++..+++|+.|++|+|||+.+++.... +
T Consensus 245 s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~t-L 321 (356)
T 2w18_A 245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTAL-L 321 (356)
T ss_dssp C------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEE-E
T ss_pred ccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEE-e
Confidence 56888999999999998876432 4444443 3344488999999999999999998876432 2
Q ss_pred eeccccccCCC-CeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909 390 DFHDRKKTSGN-KITGIQFSRDESQRIMITSEDSKLRILDG 429 (626)
Q Consensus 390 ~~~~~~~~~~~-~i~~l~~s~~~~~~l~~~s~dg~i~iwd~ 429 (626)
. .|.. .+..++|+|+| ++|++|+.|++|+|||.
T Consensus 322 ~------gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 322 P------PVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp C------CC--CCCCEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred c------CCCCCeEEEEEECCCC-CEEEEEECCCcEEEecC
Confidence 1 1223 34568999998 79999999999999984
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=1.1e-22 Score=219.44 Aligned_cols=325 Identities=12% Similarity=0.063 Sum_probs=220.7
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec-c
Q 006909 188 KFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-G 266 (626)
Q Consensus 188 ~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 266 (626)
+|+|++.++++++.|++|.+||..++ +.+.++. +
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~---------------------------------------------~~~~~i~~g 178 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSK---------------------------------------------KIVKVIDTG 178 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTC---------------------------------------------CEEEEEECS
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCc---------------------------------------------eEEEEEecC
Confidence 37899999999999999999999873 3345555 3
Q ss_pred CccceEEEEEcCCC-eEEEEeCCCcEEEecc--CCCeeeEeecCCCCeEEEEEeeC---CCCEEEEEe-CCCcEEEEeCC
Q 006909 267 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV--GCNQCLNVFDHHNYVTCVQFNPI---DDNYFISGS-IDGKVRIWGVC 339 (626)
Q Consensus 267 h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~--~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~s-~dg~v~iwd~~ 339 (626)
|. +..++|+|++ +|++++.|++|.+||+ .+++++..+.+...+..++|+|. +++++++++ .+++|.+||..
T Consensus 179 ~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~ 256 (543)
T 1nir_A 179 YA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE 256 (543)
T ss_dssp TT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred cc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence 43 8899999998 8999999999999999 88999988888888999999972 677888777 48999999999
Q ss_pred CCeEEEeccC------------CCCeEEEEEeeCCCEE-EEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEE
Q 006909 340 EKRVVDWADV------------RDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 340 ~~~~~~~~~~------------~~~i~~i~~sp~g~~l-~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l 405 (626)
+++++..... ...+.++.++|++..+ ++...++.|.+||+.+...... .+. +...+.++
T Consensus 257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-------~~~~~~~~ 329 (543)
T 1nir_A 257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-------AAPFLHDG 329 (543)
T ss_dssp TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-------CCSSCCCE
T ss_pred ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-------cCcCccCc
Confidence 9887654322 2368899999977654 4566789999999987654321 111 13567889
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCccee--eeee--cCCCCCeEEEEEcCC-CCEEEEEe-CCccEEEEECCCCCCCCC
Q 006909 406 QFSRDESQRIMITSEDSKLRILDGVDVIH--KFKG--LPKSGSQMSASFTTT-GKHIISIG-DDCRVYVWNYDELCFPSS 479 (626)
Q Consensus 406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~--~~~~~~v~~~~~sp~-g~~l~s~s-~dg~I~iwd~~~~~~~~~ 479 (626)
.|+|+|..+++++..+++|.+||..+... .+.. .+|.+....+ ++|+ +..++++. .|++|.+||+.+...+.
T Consensus 330 ~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~- 407 (543)
T 1nir_A 330 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ- 407 (543)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT-
T ss_pred eECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch-
Confidence 99999843445556789999999875433 3332 1244334333 4677 66667765 58999999998731110
Q ss_pred CccCCccceeeeccCCcEEEEecCCCCcccccccCCC----ccccCccccccCCCCc-----------ccCCCcccCCcc
Q 006909 480 KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS----LRDCSQKWDNLETAPW-----------IRDSERFSLGSW 544 (626)
Q Consensus 480 ~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~----~~~~~~~w~~~~~~~~-----------~~~~~~~~~~~~ 544 (626)
+...+...+..+. +..+.++++|++..||...... ....+.+|+....... +..+...+..++
T Consensus 408 -~~~~~v~~l~~~g-~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 485 (543)
T 1nir_A 408 -YAWKKVAELQGQG-GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE 485 (543)
T ss_dssp -TBTSEEEEEECSC-SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE
T ss_pred -hcCeEEEEEEcCC-CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc
Confidence 0000111111111 2223455555555555433100 1234455554322111 123456788999
Q ss_pred ccCCCCcccccCC----CCCCCCCCCcccC
Q 006909 545 FSNDGPCRGSATW----PAEKLPLWDVTID 570 (626)
Q Consensus 545 ~s~dg~~l~s~~~----~d~~i~vwd~~~~ 570 (626)
|+|||+.+..+.| .++.|.+||..++
T Consensus 486 ~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 486 YNKRGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp ECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 9999998887654 2689999999998
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=4.2e-23 Score=232.80 Aligned_cols=342 Identities=10% Similarity=0.049 Sum_probs=212.8
Q ss_pred cCcEEEEEEcCCCCEEEEEeC-CC-----cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 181 KGCIWTLKFSPDGRYLASGGE-DG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~-Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
...|++++|||||++|++++. |+ .|++||+.++............ ..+. .+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~-----~~~~-~~----------------- 92 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL-----PGTE-TL----------------- 92 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-----------------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc-----cccc-cc-----------------
Confidence 557999999999999999998 88 8999999886543222110000 0000 00
Q ss_pred cccCCCceeec--cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC---eeeEeecCCCCeEEEEEeeCCCCEEEEEe
Q 006909 255 QIEESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 255 ~~~~~~~~~~~--~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~v~~~~~~p~~~~~l~s~s 328 (626)
..+....+... .....|.+++|+|+| +|++++. +.|++||+.++ .......+...+.+++|+| ++++|++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~ 170 (741)
T 2ecf_A 93 SDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR 170 (741)
T ss_dssp --------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE
T ss_pred cchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe
Confidence 00000000000 012457899999998 6777765 99999999988 6655556778899999999 999999987
Q ss_pred CCCcEEEEeCCCCeEEEeccCCCC-----------------eEEEEEeeCCCEEEEEecCC-------------------
Q 006909 329 IDGKVRIWGVCEKRVVDWADVRDV-----------------ISAICYIPDGKGFIVGSITG------------------- 372 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~~~~~~~~-----------------i~~i~~sp~g~~l~~g~~dg------------------- 372 (626)
++.|++||+.+++.......... +.+++|+|||++|++++.|+
T Consensus 171 -~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~ 249 (741)
T 2ecf_A 171 -GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI 249 (741)
T ss_dssp -TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred -CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence 46899999999887765443222 47899999999999988765
Q ss_pred --------------cEEEEEcCC-CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC-----CCcEEEEeCCcc
Q 006909 373 --------------TCHFYKASG-NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-----DSKLRILDGVDV 432 (626)
Q Consensus 373 --------------~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~-----dg~i~iwd~~~~ 432 (626)
.|.+||+.+ +.... +... ..+...+..++| ||| ++|++++. +..|++||..+.
T Consensus 250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~--~~~~---~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 250 EQRYPAAGDANVQVKLGVISPAEQAQTQW--IDLG---KEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EEECCBTTSCCCEEEEEEECSSTTCCCEE--ECCC---SCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTC
T ss_pred EeecCCCCCCCCeeEEEEEECCCCCceEE--ecCC---CCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCC
Confidence 788889877 65322 1111 123467899999 998 56665543 568999997754
Q ss_pred e--eeeeecCCCC---CeEEEEEcCCCCEEEEEeCCccEEEEECCC-CCC-CCCCccCCccceeeeccCCcEEEEecCCC
Q 006909 433 I--HKFKGLPKSG---SQMSASFTTTGKHIISIGDDCRVYVWNYDE-LCF-PSSKQKNSVRSCEHFFSEGVSVAVQWPGI 505 (626)
Q Consensus 433 ~--~~~~~~~~~~---~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~-~~~-~~~~~~~~~~~~~~~~~~g~~~av~~s~~ 505 (626)
. ..+... ... .+..++|+|||+++++++.||.+.||.++. +.. ....+...+.....|+|+|..+++..+.+
T Consensus 323 ~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~ 401 (741)
T 2ecf_A 323 QQRVLAHET-SPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIE 401 (741)
T ss_dssp CEEEEEEEE-CSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSS
T ss_pred ceEEEEEcC-CCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCC
Confidence 3 223222 112 446889999999999999999888887652 111 11111112222224566665544443333
Q ss_pred C---cccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCC---CCCCCCCcc
Q 006909 506 G---TEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPA---EKLPLWDVT 568 (626)
Q Consensus 506 ~---~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d---~~i~vwd~~ 568 (626)
+ ..+|.+..+.. ....+.. ...+..++|||||++++...... ..+.+|+..
T Consensus 402 ~~~~~~l~~~~~~g~-----------~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 402 SARESQIYAVPLQGG-----------QPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp CTTCBEEEEEETTCC-----------CCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred CCceEEEEEEEcCCC-----------Ceeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 2 23333322110 0011111 33456889999999876543211 245666553
No 132
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=1.9e-23 Score=244.08 Aligned_cols=406 Identities=12% Similarity=0.058 Sum_probs=234.4
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCcee
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGED------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 247 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (626)
.+.|.+|.+.|.+++|||||++||+++.+ ..|++|++.++.......................+ ..... ...
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~-SpDg~-ll~ 122 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGF-DPDGN-LII 122 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEE-CTTCC-EEE
T ss_pred EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccC-CCCCE-EEE
Confidence 45677899999999999999999988643 37999998875422111100000000000000011 11111 111
Q ss_pred ecC-C-------cccc--ccCCCceeeccCccceEEEEEcCCCeEEEEeC------------CCcEEEeccCC-CeeeEe
Q 006909 248 VIP-D-------EVFQ--IEESPLQELHGHKGDVLDLAWSNSNYLLSCSM------------DKTVRMWQVGC-NQCLNV 304 (626)
Q Consensus 248 ~~~-~-------~~~~--~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~------------d~~v~iwd~~~-~~~~~~ 304 (626)
... . .+|. ........+..+ ....++|+| |.+++++. +...++|.... ++....
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~~~~~~sp-G~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l 199 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLG--PATHILFAD-GRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI 199 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSC--SCSEEEEET-TEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCC--CcceeeeCC-CEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC
Confidence 100 0 1111 122222233322 223445555 44444331 12334443211 233333
Q ss_pred ecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC--CCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCC
Q 006909 305 FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC--EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 382 (626)
Q Consensus 305 ~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~ 382 (626)
..|...+.++.|++ + .++++++.++++.||.+. ++....+..+. .+..++|+|+|+.++.+ .++.|.+|++...
T Consensus 200 ~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~ 275 (1045)
T 1k32_A 200 VDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE 275 (1045)
T ss_dssp ECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC
T ss_pred cCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce
Confidence 35777888999987 5 667778888988999754 44444444444 46678999999999887 5899999998443
Q ss_pred ceeeeEEeecc-----ccccCCCCeEEEEEc-CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCC-CeEEEEEcCCCC
Q 006909 383 DLKLEKVDFHD-----RKKTSGNKITGIQFS-RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSG-SQMSASFTTTGK 455 (626)
Q Consensus 383 ~~~~~~~~~~~-----~~~~~~~~i~~l~~s-~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~g~ 455 (626)
... .+.... ....+...+.+++|+ |+| +++++++ ++.|.+|+....... ....+.. .+..++|+ +|+
T Consensus 276 ~l~--~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~ 349 (1045)
T 1k32_A 276 KIE--KIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKV 349 (1045)
T ss_dssp CEE--ECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEE
T ss_pred Eee--eeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCC
Confidence 322 111100 000123468999999 998 6777776 889999997644322 2233555 78999999 999
Q ss_pred EEEEEeCCccEE-EEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCC--c
Q 006909 456 HIISIGDDCRVY-VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP--W 532 (626)
Q Consensus 456 ~l~s~s~dg~I~-iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~--~ 532 (626)
.|++++.++.|. +|++.++........ ......++|+|+|..++....+ ..+.+|+...... .
T Consensus 350 ~l~~~s~~~~l~~~~d~~~~~~~~l~~~-----------~~~~~~~~~SpDG~~la~~~~~---~~v~~~d~~tg~~~~~ 415 (1045)
T 1k32_A 350 AFIHGTREGDFLGIYDYRTGKAEKFEEN-----------LGNVFAMGVDRNGKFAVVANDR---FEIMTVDLETGKPTVI 415 (1045)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEECCCC-----------CCSEEEEEECTTSSEEEEEETT---SEEEEEETTTCCEEEE
T ss_pred eEEEEECCCceEEEEECCCCCceEecCC-----------ccceeeeEECCCCCEEEEECCC---CeEEEEECCCCceEEe
Confidence 999999988999 999887532111111 2233445555555554433322 1234444432221 2
Q ss_pred ccCCCcccCCccccCCCCcccccCCC---------CCCCCCCCcccCCCCCCCChhhHHHHhhhccCCc--ccccccccc
Q 006909 533 IRDSERFSLGSWFSNDGPCRGSATWP---------AEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVD--DVRAISATW 601 (626)
Q Consensus 533 ~~~~~~~~~~~~~s~dg~~l~s~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~d 601 (626)
...+...+..++|||||+++++++.. +..|.+||+.++ ....+ ..+.. ...++++ |
T Consensus 416 ~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-----------~~~~l-~~~~~~~~~~~~sp-d 482 (1045)
T 1k32_A 416 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-----------KIFAA-TTENSHDYAPAFDA-D 482 (1045)
T ss_dssp EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-----------EEEEC-SCSSSBEEEEEECT-T
T ss_pred ccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC-----------cEEEe-eCCCcccCCceEcC-C
Confidence 22456668899999999998876542 248999999876 21111 11111 1235666 8
Q ss_pred ceEEEEecCCceEeeeeecC
Q 006909 602 GLVIVTAGCDGMIKTFHNYG 621 (626)
Q Consensus 602 g~~ivt~g~Dg~Irvw~~~g 621 (626)
|+.|++++.++..++|+...
T Consensus 483 G~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 483 SKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp SCEEEEEESCCCCCEECSSS
T ss_pred CCEEEEEecccCCcCcchhc
Confidence 99999999999998887543
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=7.1e-22 Score=213.00 Aligned_cols=333 Identities=9% Similarity=0.034 Sum_probs=219.3
Q ss_pred EcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC--CCCeEEEeccCCCC
Q 006909 276 WSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV--CEKRVVDWADVRDV 352 (626)
Q Consensus 276 ~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~--~~~~~~~~~~~~~~ 352 (626)
++|++ .+++++.|++|.+||..+++++..+.....+.+++|+| ++++|++++.|++|++||+ .+++++....+...
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~ 223 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE 223 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCC
Confidence 67877 67788899999999999999999887444489999999 9999999999999999999 78887776667778
Q ss_pred eEEEEEee----CCCEEEEEec-CCcEEEEEcCCCceeeeEEeecccc-----ccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 006909 353 ISAICYIP----DGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRK-----KTSGNKITGIQFSRDESQRIMITSEDS 422 (626)
Q Consensus 353 i~~i~~sp----~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~i~~l~~s~~~~~~l~~~s~dg 422 (626)
+..++|+| +|+++++++. +++|.+||..+.+... .+...+.. ......+..+.++|++..++++...++
T Consensus 224 p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~-~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g 302 (543)
T 1nir_A 224 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ-IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG 302 (543)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE-EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccce-eecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence 89999999 9999999884 8999999998776543 22221100 011247899999998878888888999
Q ss_pred cEEEEeCCccee-eeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCCCCCCCCccC---Cccceee-eccC-C
Q 006909 423 KLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQKN---SVRSCEH-FFSE-G 495 (626)
Q Consensus 423 ~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~-~~~~-g 495 (626)
.|.+||..+... ......+...+..+.|+|+|+++++++ .+++|.+||+.++......... ....... ++|+ |
T Consensus 303 ~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g 382 (543)
T 1nir_A 303 KVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG 382 (543)
T ss_dssp EEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTE
T ss_pred eEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCc
Confidence 999999764221 111112456688899999999877654 5889999999987322111110 0000111 2444 3
Q ss_pred cEEEEecC-CCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccC--CC----CCCCCCCCcc
Q 006909 496 VSVAVQWP-GIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSAT--WP----AEKLPLWDVT 568 (626)
Q Consensus 496 ~~~av~~s-~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~--~~----d~~i~vwd~~ 568 (626)
..++..-. .+...++....... .-..|..+ ..+..++..+..++|+|||++|.+++ .+ ++.|.+||+.
T Consensus 383 ~~~~s~~~~d~~V~v~d~~~~~~--~~~~~~~v---~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 383 PVWSTSHLGDGSISLIGTDPKNH--PQYAWKKV---AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK 457 (543)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTC--TTTBTSEE---EEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred cEEEeccCCCceEEEEEeCCCCC--chhcCeEE---EEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECC
Confidence 33333221 22233333332110 00112221 22344555678899999999998876 22 4699999999
Q ss_pred cCCCCCCCChhhHHHHhhhc-----cCCccccccccccceEEEEec-----CCceEeeeeecC
Q 006909 569 IDSDGYCQDPQQQRLQQQCL-----NNVDDVRAISATWGLVIVTAG-----CDGMIKTFHNYG 621 (626)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~dg~~ivt~g-----~Dg~Irvw~~~g 621 (626)
++. ..... . +..... ........+++ +|+.+..+. .|++|.||+..-
T Consensus 458 ~~~-~~~~~--~--~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 458 NLD-AKYQV--L--PIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp CTT-SCCEE--E--CHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred CCC-CCeEE--e--echhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCCCCeEEEEECCC
Confidence 872 11000 0 000000 11111235566 788777653 489999999654
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=4.7e-21 Score=194.30 Aligned_cols=249 Identities=12% Similarity=0.153 Sum_probs=175.9
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCC-CcEEEEEcC--CCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGED-GVVRIWHVT--SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~D-g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
.|...+.+++|+|+|++|++++.+ +.|.+|++. ++..
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---------------------------------------- 74 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---------------------------------------- 74 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----------------------------------------
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce----------------------------------------
Confidence 477889999999999999988886 999999997 3211
Q ss_pred ccCCCceeeccCccceEEEEEcCCC-eEEEEe-CCCcEEEecc---CCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe-C
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQV---GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-I 329 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s-~d~~v~iwd~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~ 329 (626)
..+..+..+. .+..++|+|++ +|++++ .++.|.+||+ .....+..+.....+.+++|+| +++++++++ .
T Consensus 75 ---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~ 149 (343)
T 1ri6_A 75 ---TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALK 149 (343)
T ss_dssp ---EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGG
T ss_pred ---eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCC
Confidence 1122333333 78899999998 565555 4889999999 4445556666666799999999 998888777 8
Q ss_pred CCcEEEEeCCC-CeEEE------eccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCC--Cceeee-EEeeccccccC
Q 006909 330 DGKVRIWGVCE-KRVVD------WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG--NDLKLE-KVDFHDRKKTS 398 (626)
Q Consensus 330 dg~v~iwd~~~-~~~~~------~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~--~~~~~~-~~~~~~~~~~~ 398 (626)
++.|++||+.+ +++.. .......+..++|+|+|+++++++ .++.|.+|++.. +..... ...........
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 229 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence 89999999987 65432 222345788999999999776655 789999999964 322211 11111100011
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc---ceeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECC
Q 006909 399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYD 472 (626)
Q Consensus 399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~ 472 (626)
...+..++|+|+|..+++++..++.|.+||+.. .............+..++|+|+|++|++++ .++.|.+|+++
T Consensus 230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 230 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 346778999999844444566899999999762 122222211223488999999999988887 57999999665
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=9.8e-22 Score=220.94 Aligned_cols=311 Identities=13% Similarity=0.092 Sum_probs=197.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909 183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 262 (626)
Q Consensus 183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (626)
.+.+++|+|||+++++ +.||+|++||+.++. ...
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~---------------------------------------------~~~ 51 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT---------------------------------------------STV 51 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC---------------------------------------------CEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCc---------------------------------------------EEE
Confidence 4678999999998877 789999999998742 233
Q ss_pred eeccCcc---ceEEEEEcCCC-eEEEEeCC---------CcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEEE
Q 006909 263 ELHGHKG---DVLDLAWSNSN-YLLSCSMD---------KTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS 326 (626)
Q Consensus 263 ~~~~h~~---~V~~l~~s~~~-~l~s~s~d---------~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s 326 (626)
.+.+|.. .|.+++|+||| +|++++.+ +.|.+||+.+++...... +...+..++|+| +++.|++
T Consensus 52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SP-dG~~la~ 130 (723)
T 1xfd_A 52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIF 130 (723)
T ss_dssp EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEE
T ss_pred EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECC-CCCEEEE
Confidence 4444543 48999999998 78888764 778899999887632222 344588999999 9999999
Q ss_pred EeCCCcEEEEeCCCCeEEEeccC-CCC------------------eEEEEEeeCCCEEEEEecCC---------------
Q 006909 327 GSIDGKVRIWGVCEKRVVDWADV-RDV------------------ISAICYIPDGKGFIVGSITG--------------- 372 (626)
Q Consensus 327 ~s~dg~v~iwd~~~~~~~~~~~~-~~~------------------i~~i~~sp~g~~l~~g~~dg--------------- 372 (626)
++. +.|++||+.+++...+... ... +.+++|+|||+.|++++.++
T Consensus 131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~ 209 (723)
T 1xfd_A 131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI 209 (723)
T ss_dssp EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence 886 7999999998876654332 222 37899999999999987653
Q ss_pred -------------------cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEeC
Q 006909 373 -------------------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE----DSKLRILDG 429 (626)
Q Consensus 373 -------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~----dg~i~iwd~ 429 (626)
.|++||+.+..... .+..+.....+...+..++|+||| +++++.+. +..|++||+
T Consensus 210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~-~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~ 287 (723)
T 1xfd_A 210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL-EMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDA 287 (723)
T ss_dssp SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE-ECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEET
T ss_pred CCcceeccCCCCCCCCCeeEEEEEECCCCceeE-EeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeC
Confidence 78899988765322 111111111124578999999998 56666543 357999997
Q ss_pred Ccce--eeeeecCCCCCe----EEEEEcCCCCEEEE--EeCCc------cEEEEE-CCCCC---CCCCCc-cCCccceee
Q 006909 430 VDVI--HKFKGLPKSGSQ----MSASFTTTGKHIIS--IGDDC------RVYVWN-YDELC---FPSSKQ-KNSVRSCEH 490 (626)
Q Consensus 430 ~~~~--~~~~~~~~~~~v----~~~~~sp~g~~l~s--~s~dg------~I~iwd-~~~~~---~~~~~~-~~~~~~~~~ 490 (626)
.+.. ..+... +...+ ..++|+|||++|+. +..++ .|++|| ..++. ...... ...+.....
T Consensus 288 ~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~ 366 (723)
T 1xfd_A 288 TTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA 366 (723)
T ss_dssp TTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred CCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE
Confidence 6533 222221 23333 37899999997775 44566 577777 34432 111111 111122234
Q ss_pred eccCCcEEEEecCCCCcccccccCCCccccCccccccCC----CCcccC---CCcccCCccccCCCCccccc
Q 006909 491 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET----APWIRD---SERFSLGSWFSNDGPCRGSA 555 (626)
Q Consensus 491 ~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~----~~~~~~---~~~~~~~~~~s~dg~~l~s~ 555 (626)
|+|+|..++.....+ ......+|..... ...+.. +...+..++|||||++++..
T Consensus 367 ~spdg~~l~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 367 YDEKGNKIYFLSTED-----------LPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp EETTTTEEEEEESSS-----------CTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred EcCCCCEEEEEEcCC-----------CCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 555555444333321 1112233332111 011111 34457788999999977653
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=4.3e-22 Score=223.28 Aligned_cols=282 Identities=11% Similarity=0.052 Sum_probs=187.9
Q ss_pred ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-----Ce
Q 006909 268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-----KR 342 (626)
Q Consensus 268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-----~~ 342 (626)
...|.+++|+|++.++.+ .++.|++||+.+++......+...+.+++|+| +++.|+++ .++.|++||+.+ ++
T Consensus 81 ~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 81 AFPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp -CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred ccCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 357999999999755555 45999999999998877777778899999999 99999985 679999999988 77
Q ss_pred EEEeccCCCC---------------eEEEEEeeCCCEEEEEe---------------------------------cCCcE
Q 006909 343 VVDWADVRDV---------------ISAICYIPDGKGFIVGS---------------------------------ITGTC 374 (626)
Q Consensus 343 ~~~~~~~~~~---------------i~~i~~sp~g~~l~~g~---------------------------------~dg~i 374 (626)
.......... +.++.|+|||++|++++ .+..|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 6654333222 58999999999999987 34679
Q ss_pred EEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEeCCcc-e-eeeeecCCCC---C
Q 006909 375 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS-----KLRILDGVDV-I-HKFKGLPKSG---S 444 (626)
Q Consensus 375 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg-----~i~iwd~~~~-~-~~~~~~~~~~---~ 444 (626)
++||+.++....... ...+...+..++|+||| ++|++++.++ .|++||..+. . ..+....+.. .
T Consensus 238 ~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 238 GIYHLATGKTVYLQT-----GEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp EEEETTTTEEEECCC-----CSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred EEEECCCCceEeecc-----CCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 999998776422111 11234678999999998 6777776665 8999998754 2 2222111222 3
Q ss_pred eEEEEEcC--CCCEEEEEeCCccEEEEECC-CCCC--CCCCccCCccceeeeccCCcEEEEecCCCC---cccccccCCC
Q 006909 445 QMSASFTT--TGKHIISIGDDCRVYVWNYD-ELCF--PSSKQKNSVRSCEHFFSEGVSVAVQWPGIG---TEQKSLCSSS 516 (626)
Q Consensus 445 v~~~~~sp--~g~~l~s~s~dg~I~iwd~~-~~~~--~~~~~~~~~~~~~~~~~~g~~~av~~s~~~---~~l~~~~~~~ 516 (626)
+..++|+| +|++|++++.|+.++||.++ ++.. ....+...+..+..|+|+|..++++...++ ..++..
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~---- 387 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI---- 387 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE----
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE----
Confidence 46789999 99999999999999999876 2211 111111112222445555554444433332 222222
Q ss_pred ccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCC---CCCCCCCcccC
Q 006909 517 LRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPA---EKLPLWDVTID 570 (626)
Q Consensus 517 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d---~~i~vwd~~~~ 570 (626)
+..........+...+..++|||||++++...... ..|.+||+.++
T Consensus 388 --------d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 388 --------DIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp --------ETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred --------EcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 21111111122334467889999999877643211 45889998776
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=5.4e-20 Score=187.43 Aligned_cols=272 Identities=9% Similarity=0.064 Sum_probs=193.0
Q ss_pred ccCcEEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 180 HKGCIWTLKFSPDGRYLASGGE-------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
....+..++|+|+|++|++++. ++.|.+||..+++.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~------------------------------------- 81 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV------------------------------------- 81 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-------------------------------------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-------------------------------------
Confidence 4567889999999998888874 56899999887432
Q ss_pred cccccCCCceeeccCccceEEEEEcCCC-eE-EEEeCCCcEEEeccCCCeeeEeecCCC----------CeEEEEEeeCC
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHN----------YVTCVQFNPID 320 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~----------~v~~~~~~p~~ 320 (626)
+..+.. ...+..++|+|++ ++ ++...++.|.+||..+++.+..+.... .+.+++|+| +
T Consensus 82 --------~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d 151 (353)
T 3vgz_A 82 --------TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-A 151 (353)
T ss_dssp --------EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-T
T ss_pred --------EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-C
Confidence 222221 2346778999987 34 455667999999999999888775322 278999999 8
Q ss_pred CCEEEEEe--CCCcEEEEeCCCCeEEEecc-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccccc
Q 006909 321 DNYFISGS--IDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 397 (626)
Q Consensus 321 ~~~l~s~s--~dg~v~iwd~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 397 (626)
++++++++ .++.|.+||+.+++...... +...+.+++|+|+|+++++++.++.|.+||+.+.+.... +... ...
T Consensus 152 g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~-~~~~--~~~ 228 (353)
T 3vgz_A 152 TNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR-KKLL--DDG 228 (353)
T ss_dssp TTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE-EECC--CSS
T ss_pred CCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE-EEcC--CCC
Confidence 88777766 47889999999988877665 566688999999999999999999999999988765432 2221 112
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCCCC
Q 006909 398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF 476 (626)
Q Consensus 398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~~~ 476 (626)
+...+.+++|+|++..++++...++.|.+||..+.......... ....++|+|+|++++.++ .++.|.+||..++..
T Consensus 229 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 229 KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP--ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS--SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC--CCceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence 23568899999998544444555699999998654332222111 225689999999766655 689999999987632
Q ss_pred CCCCccCCccceeeeccCCcEEEEecCCCCcccccccC
Q 006909 477 PSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS 514 (626)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~ 514 (626)
... +...+....++|+|+|..++....
T Consensus 307 ~~~-----------~~~~~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 307 VKT-----------FDTPTHPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp EEE-----------EECCSEEEEEEECTTSCEEEEEEE
T ss_pred EEE-----------EecCCCCCeEEEcCCCCEEEEEEc
Confidence 111 111223456777777776654433
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=2.8e-21 Score=217.88 Aligned_cols=325 Identities=9% Similarity=0.031 Sum_probs=210.5
Q ss_pred ccceEEEEEcCCC-eEEEEeC-CC-----cEEEeccCCCeeeEeecCC-------------------------CCeEEEE
Q 006909 268 KGDVLDLAWSNSN-YLLSCSM-DK-----TVRMWQVGCNQCLNVFDHH-------------------------NYVTCVQ 315 (626)
Q Consensus 268 ~~~V~~l~~s~~~-~l~s~s~-d~-----~v~iwd~~~~~~~~~~~~~-------------------------~~v~~~~ 315 (626)
...+.+++|+|+| +|++++. |+ .|++||+.+++....+.+. ..+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 4579999999998 7888888 88 8999999999887766421 2378999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCCCC---eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeec
Q 006909 316 FNPIDDNYFISGSIDGKVRIWGVCEK---RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH 392 (626)
Q Consensus 316 ~~p~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~ 392 (626)
|+| ++++|++++. +.|++||+.++ ....+..+...+..++|+|||++|+.++ ++.|++||+.++..... ...
T Consensus 116 ~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~--~~~ 190 (741)
T 2ecf_A 116 WSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL--TAD 190 (741)
T ss_dssp ECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC--CCC
T ss_pred ECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe--ccC
Confidence 999 9999999886 99999999998 7777778888899999999999999887 56999999987654321 111
Q ss_pred cccc---c--------CCCCeEEEEEcCCCCcEEEEEeCCC---------------------------------cEEEEe
Q 006909 393 DRKK---T--------SGNKITGIQFSRDESQRIMITSEDS---------------------------------KLRILD 428 (626)
Q Consensus 393 ~~~~---~--------~~~~i~~l~~s~~~~~~l~~~s~dg---------------------------------~i~iwd 428 (626)
.... . ....+..+.|+||| ++|++++.|+ .|++||
T Consensus 191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 1000 0 00125789999998 6777776654 788899
Q ss_pred CCc-ceeeeee--cCCCCCeEEEEEcCCCCEEEEEeC-----CccEEEEECCCCCCCCCCc--cCC---ccceeeeccCC
Q 006909 429 GVD-VIHKFKG--LPKSGSQMSASFTTTGKHIISIGD-----DCRVYVWNYDELCFPSSKQ--KNS---VRSCEHFFSEG 495 (626)
Q Consensus 429 ~~~-~~~~~~~--~~~~~~v~~~~~sp~g~~l~s~s~-----dg~I~iwd~~~~~~~~~~~--~~~---~~~~~~~~~~g 495 (626)
+.. ....... ..+...+..++| |||++|++++. +..|++||+.++....... ... ......|+|+|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC
Confidence 765 4322221 135677899999 99999997754 5789999998873221111 110 12345666776
Q ss_pred cEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCc-cccCCCCcccccCCCCC--CCCCCCcccCCC
Q 006909 496 VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGS-WFSNDGPCRGSATWPAE--KLPLWDVTIDSD 572 (626)
Q Consensus 496 ~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~s~~~~d~--~i~vwd~~~~~~ 572 (626)
.+++++-..+...|+...... ....+..+...+..+ +|+|||+.++.....++ .+++|++.....
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~------------~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKG------------KAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSS------------CEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred eEEEEecCCCccEEEEEcCCC------------CeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 644443222223344332110 011122333445565 59999997754433244 788998865310
Q ss_pred CCCCChhhHHHHhhhccCCccccccccccceEEEEecCC----ceEeeeeecC
Q 006909 573 GYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCD----GMIKTFHNYG 621 (626)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g~D----g~Irvw~~~g 621 (626)
....+......+..++++ ||+.|+....+ +.+.+|+.-|
T Consensus 417 ---------~~~~l~~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 417 ---------QPQRLSKAPGMHSASFAR-NASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp ---------CCEECCCSCSEEEEEECT-TSSEEEEEEEETTEEEEEEEEETTS
T ss_pred ---------CeeecccCCCceEEEECC-CCCEEEEEecCCCCCCeEEEEEcCC
Confidence 011111111223356666 78777655433 4577776544
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=7.1e-20 Score=185.01 Aligned_cols=238 Identities=11% Similarity=0.120 Sum_probs=169.8
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec
Q 006909 187 LKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 265 (626)
Q Consensus 187 l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (626)
..|.++++ .+++++.++.|.+||..+++ ....+.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~---------------------------------------------~~~~~~ 37 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLE---------------------------------------------ILNQIT 37 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCC---------------------------------------------EEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccc---------------------------------------------eeeeEE
Confidence 34666655 47788889999999998743 233334
Q ss_pred cCccceEEEEEcCCC-eEEEEeC-CCcEEEeccCCCee-eEeecCCC-CeEEEEEeeCCCCEEEEEeCCC---cEEEEeC
Q 006909 266 GHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQC-LNVFDHHN-YVTCVQFNPIDDNYFISGSIDG---KVRIWGV 338 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~-~l~s~s~-d~~v~iwd~~~~~~-~~~~~~~~-~v~~~~~~p~~~~~l~s~s~dg---~v~iwd~ 338 (626)
.+...+ .++|+|++ ++++++. ++.|.+||+.+++. ...+.... +..+++|+| ++++++++..++ .|.+||+
T Consensus 38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~ 115 (331)
T 3u4y_A 38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSF 115 (331)
T ss_dssp CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEET
T ss_pred ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEEC
Confidence 445556 99999998 5665555 88999999999887 66665444 444499999 999988555543 8999999
Q ss_pred CCCeEEEeccCCCCeEEEEEeeCCCEEEEE-ecCCc-EEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909 339 CEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGT-CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 416 (626)
Q Consensus 339 ~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~ 416 (626)
.+++............+++|+|+|++++++ ..++. +.+|++.......... .. .......+..++|+|+|..+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~--~~~~~~~~~~~~~spdg~~l~v 192 (331)
T 3u4y_A 116 LKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QE--FISGGTRPFNITFTPDGNFAFV 192 (331)
T ss_dssp TTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EE--EECSSSSEEEEEECTTSSEEEE
T ss_pred CCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-Cc--cccCCCCccceEECCCCCEEEE
Confidence 999888777777778999999999866665 45588 9999998644322211 00 1122356899999999844555
Q ss_pred EEeCCCcEEEEeCCccee---eeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCCC
Q 006909 417 ITSEDSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELC 475 (626)
Q Consensus 417 ~~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~~ 475 (626)
++..++.|.+||+.+... .... .....+..++|+|+|++|+.++ .++.|.+||+.++.
T Consensus 193 ~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 193 ANLIGNSIGILETQNPENITLLNAV-GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGT 254 (331)
T ss_dssp EETTTTEEEEEECSSTTSCEEEEEE-ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred EeCCCCeEEEEECCCCcccceeeec-cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence 666789999999864332 2222 2346778899999999877665 47889999998863
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=6e-20 Score=185.54 Aligned_cols=248 Identities=10% Similarity=0.097 Sum_probs=173.8
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
..+..+...+ +++|+|+|++|++++. ++.|.+||+.++..
T Consensus 34 ~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-------------------------------------- 74 (331)
T 3u4y_A 34 NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-------------------------------------- 74 (331)
T ss_dssp EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--------------------------------------
T ss_pred eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--------------------------------------
Confidence 3344456667 9999999997776665 88999999987321
Q ss_pred ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCC---cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEE-EEe
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGS 328 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~---~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~s 328 (626)
....+..+..+..+++|+|++ +++++..++ .|.+||+.+++.+..+.....+.+++|+| ++++++ +..
T Consensus 75 ------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~ 147 (331)
T 3u4y_A 75 ------KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP-NGNGLILIDR 147 (331)
T ss_dssp ------EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT-TSSCEEEEEE
T ss_pred ------eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC-CCCEEEEEec
Confidence 034444555666569999998 666444442 89999999999998888777789999999 887554 445
Q ss_pred CCCc-EEEEeCCCCe-E----EEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 329 IDGK-VRIWGVCEKR-V----VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 329 ~dg~-v~iwd~~~~~-~----~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
.++. |.+|++.... + .........+..++|+|+|+++++++ .++.|.+||+.+.+.......... ...
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~ 222 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-----NNL 222 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-----SSC
T ss_pred CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-----CCC
Confidence 5688 9999987532 2 12234456689999999999766555 688999999987765111111111 256
Q ss_pred eEEEEEcCCCCcEEE-EEeCCCcEEEEeCCccee----eeeec--CCCC---CeEEEEEcCCCCEEEEEeC-CccEEEEE
Q 006909 402 ITGIQFSRDESQRIM-ITSEDSKLRILDGVDVIH----KFKGL--PKSG---SQMSASFTTTGKHIISIGD-DCRVYVWN 470 (626)
Q Consensus 402 i~~l~~s~~~~~~l~-~~s~dg~i~iwd~~~~~~----~~~~~--~~~~---~v~~~~~sp~g~~l~s~s~-dg~I~iwd 470 (626)
+..++|+|+| ++++ +...++.|.+||..+... .+... .+.. ....++|+|+|++|++++. ++.|.+||
T Consensus 223 ~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 223 PGTIVVSRDG-STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp CCCEEECTTS-SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CceEEECCCC-CEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 7889999998 5554 445678999999875433 11111 1111 2245899999998876654 57999999
Q ss_pred CCCC
Q 006909 471 YDEL 474 (626)
Q Consensus 471 ~~~~ 474 (626)
+.+.
T Consensus 302 ~~~~ 305 (331)
T 3u4y_A 302 ISGK 305 (331)
T ss_dssp TTSC
T ss_pred ecCC
Confidence 9875
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=1.4e-20 Score=186.17 Aligned_cols=203 Identities=14% Similarity=0.096 Sum_probs=148.7
Q ss_pred eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC-CeeeEeec-C-CCCeEEEEEeeCCCCEEEEEeC--CC--cE
Q 006909 262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVFD-H-HNYVTCVQFNPIDDNYFISGSI--DG--KV 333 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~-~~~~~~~~-~-~~~v~~~~~~p~~~~~l~s~s~--dg--~v 333 (626)
..+..|...|.+++|+|++ +|++++ ++.|.+||+.+ ++...... + ...+.+++|+| ++++|++++. ++ .|
T Consensus 35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l 112 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAI 112 (297)
T ss_dssp EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEE
T ss_pred eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceE
Confidence 3455688899999999998 566655 88999999998 87776664 3 36789999999 9999999983 33 45
Q ss_pred EEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEE-EEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909 334 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 334 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~-~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
..+++.++....+..+ ..+..++|+|+++.|+ ++..++.+++|++.........+ ..+...+.+++|+|+|
T Consensus 113 ~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~s~dg- 184 (297)
T 2ojh_A 113 YLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL------THGEGRNDGPDYSPDG- 184 (297)
T ss_dssp EEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC------CCSSSCEEEEEECTTS-
T ss_pred EEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc------ccCCCccccceECCCC-
Confidence 5555566665444433 3488999999999887 67889999999975432222211 1224679999999998
Q ss_pred cEEEEE-eCCCcEEEEeCC-cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC-----------ccEEEEECCCC
Q 006909 413 QRIMIT-SEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-----------CRVYVWNYDEL 474 (626)
Q Consensus 413 ~~l~~~-s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d-----------g~I~iwd~~~~ 474 (626)
.+++++ ..++.+++|+.. ..........+...+..++|+|+|++|++++.+ +.|++||+.++
T Consensus 185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 185 RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 455554 468999999864 222222233356678899999999999988765 57999999876
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=2.2e-20 Score=184.70 Aligned_cols=234 Identities=14% Similarity=0.125 Sum_probs=172.5
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
.+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ +..
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~--------------------------------------- 75 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP--------------------------------------- 75 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---------------------------------------
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---------------------------------------
Confidence 3557899999999999999999987 78999999976 432
Q ss_pred cccCCCceeeccC-ccceEEEEEcCCC-eEEEEe--CCCcEEEec--cCCCeeeEeecCCCCeEEEEEeeCCCCEEE-EE
Q 006909 255 QIEESPLQELHGH-KGDVLDLAWSNSN-YLLSCS--MDKTVRMWQ--VGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SG 327 (626)
Q Consensus 255 ~~~~~~~~~~~~h-~~~V~~l~~s~~~-~l~s~s--~d~~v~iwd--~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~ 327 (626)
.....+| ...+.+++|+|++ +|++++ .++.+.||. +.++. ...+.+...+.+++|+| +++.|+ ++
T Consensus 76 ------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~ 147 (297)
T 2ojh_A 76 ------EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSP-DGKSFTYCG 147 (297)
T ss_dssp ------EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECT-TSSEEEEEE
T ss_pred ------eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECC-CCCEEEEEE
Confidence 1222233 4678899999998 777777 334555554 45554 34454455699999999 888776 78
Q ss_pred eCCCcEEEEe--CCCCeEEEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909 328 SIDGKVRIWG--VCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 404 (626)
Q Consensus 328 s~dg~v~iwd--~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~ 404 (626)
+.++.+++|+ +.++....+..+...+.+++|+|+|+.+++++ .++.+++|++.........+. .+...+..
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~ 221 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT------DSAYGDWF 221 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC------CCSEEEEE
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe------cCCcccCC
Confidence 8899999998 45677777778888999999999999888776 589999999863322222221 12357889
Q ss_pred EEEcCCCCcEEEEEeCC-----------CcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909 405 IQFSRDESQRIMITSED-----------SKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 464 (626)
Q Consensus 405 l~~s~~~~~~l~~~s~d-----------g~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg 464 (626)
++|+|+| .+|++++.+ +.|.+||+... ........+...+..++|+|+|++|++++.+.
T Consensus 222 ~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 222 PHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 9999998 577766654 56999997643 22333334677889999999999999887653
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=1.6e-19 Score=182.88 Aligned_cols=204 Identities=15% Similarity=0.183 Sum_probs=147.0
Q ss_pred cCccceEEEEEcCCC-eEEEEeCC-CcEEEeccC--CCe--eeEeecCCCCeEEEEEeeCCCCEEEEEeC-CCcEEEEeC
Q 006909 266 GHKGDVLDLAWSNSN-YLLSCSMD-KTVRMWQVG--CNQ--CLNVFDHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGV 338 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~-~l~s~s~d-~~v~iwd~~--~~~--~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-dg~v~iwd~ 338 (626)
.|...+.+++|+|++ +|++++.+ +.|.+|++. ++. .+..+.....+.+++|+| +++++++++. ++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 466788999999998 67777776 999999997 554 334454445889999999 9988776665 788999999
Q ss_pred ---CCCeEEEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCC-CceeeeE-EeeccccccCCCCeEEEEEcCCCC
Q 006909 339 ---CEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG-NDLKLEK-VDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 339 ---~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~-~~~~~~~-~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
...+..........+.+++|+|+|+++++++ .++.|.+||+.+ +...... .... ......+..++|+|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~pdg~ 190 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT---TVEGAGPRHMVFHPNEQ 190 (343)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE---CSTTCCEEEEEECTTSS
T ss_pred CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc---cCCCCCcceEEECCCCC
Confidence 4444555555566789999999999888887 899999999987 4332111 0111 11235788999999984
Q ss_pred cEEEEEeCCCcEEEEeCCc--c----eeeeeec----CCCCCeEEEEEcCCCCEEEE-EeCCccEEEEECCC
Q 006909 413 QRIMITSEDSKLRILDGVD--V----IHKFKGL----PKSGSQMSASFTTTGKHIIS-IGDDCRVYVWNYDE 473 (626)
Q Consensus 413 ~~l~~~s~dg~i~iwd~~~--~----~~~~~~~----~~~~~v~~~~~sp~g~~l~s-~s~dg~I~iwd~~~ 473 (626)
.+++++..++.|.+|+... . ....... .....+..++|+|+|++|++ +..++.|++|++..
T Consensus 191 ~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 191 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 3445555889999999742 1 1122211 11345678999999998875 44789999999983
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=1.8e-19 Score=201.99 Aligned_cols=269 Identities=10% Similarity=0.033 Sum_probs=187.5
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 260 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (626)
...|.+++|||| ++++.+. ++.|++||+.++.
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~---------------------------------------------- 112 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARK---------------------------------------------- 112 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTE----------------------------------------------
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCc----------------------------------------------
Confidence 357999999999 6666654 5999999998632
Q ss_pred ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC-----CeeeEeecCC-CC--------------eEEEEEeeC
Q 006909 261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-----NQCLNVFDHH-NY--------------VTCVQFNPI 319 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~-----~~~~~~~~~~-~~--------------v~~~~~~p~ 319 (626)
...+..+...+.+++|+|+| .|++ +.++.|++||+.+ ++........ .. +.+++|+|
T Consensus 113 ~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp- 190 (706)
T 2z3z_A 113 VTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP- 190 (706)
T ss_dssp EEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-
T ss_pred eEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-
Confidence 23334456678889999998 6666 5789999999998 7776654322 22 58999999
Q ss_pred CCCEEEEEe---------------------------------CCCcEEEEeCCCCeEEEec---cCCCCeEEEEEeeCCC
Q 006909 320 DDNYFISGS---------------------------------IDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDGK 363 (626)
Q Consensus 320 ~~~~l~s~s---------------------------------~dg~v~iwd~~~~~~~~~~---~~~~~i~~i~~sp~g~ 363 (626)
++++|++++ .+..|++||+.+++..... .+...+.+++|+|||+
T Consensus 191 Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 270 (706)
T 2z3z_A 191 KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN 270 (706)
T ss_dssp TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC
Confidence 999999987 3467999999998876544 4557799999999999
Q ss_pred EEEEEecCC-----cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEeCC-cceee
Q 006909 364 GFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR--DESQRIMITSEDSKLRILDGV-DVIHK 435 (626)
Q Consensus 364 ~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~--~~~~~l~~~s~dg~i~iwd~~-~~~~~ 435 (626)
.|++++.++ .|++||+.++........... ......+..++|+| +| +++++++.++.++||+.. +....
T Consensus 271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~--~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~~ 347 (706)
T 2z3z_A 271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD--KHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRLI 347 (706)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC--SSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSCEE
T ss_pred EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC--CCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCCEE
Confidence 999988776 899999988732222111111 11112346789999 97 688889999999998754 22222
Q ss_pred eeecCCCCCeEE-EEEcCCCCEEEEEeCC-c----cEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecC
Q 006909 436 FKGLPKSGSQMS-ASFTTTGKHIISIGDD-C----RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP 503 (626)
Q Consensus 436 ~~~~~~~~~v~~-~~~sp~g~~l~s~s~d-g----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s 503 (626)
.....+...+.. ++|+|+|+.|+.++.+ + .|+.||+.++......+.. ......|+|+|..+++..+
T Consensus 348 ~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~ 420 (706)
T 2z3z_A 348 RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPES-GMHRTQLSPDGSAIIDIFQ 420 (706)
T ss_dssp EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSS-SEEEEEECTTSSEEEEEEE
T ss_pred EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCC-ceEEEEECCCCCEEEEEec
Confidence 222335556766 7999999988765544 3 6777787765322222222 2345577777777666543
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=4e-19 Score=180.91 Aligned_cols=249 Identities=13% Similarity=0.141 Sum_probs=171.1
Q ss_pred cccCcEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
.+...+..++|+|||+ |++++. ++.|.+|++.++..
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~---------------------------------------- 75 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA---------------------------------------- 75 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE----------------------------------------
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE----------------------------------------
Confidence 4567788899999999 555543 68999999965321
Q ss_pred ccCCCceeeccCccceEEEEEcCCC-eEEEEe-CCCcEEEeccC-CC--eeeEeecCC----------CCeEEEEEeeCC
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVG-CN--QCLNVFDHH----------NYVTCVQFNPID 320 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s-~d~~v~iwd~~-~~--~~~~~~~~~----------~~v~~~~~~p~~ 320 (626)
..+..+..+...+..++|+|++ +|++++ .++.|.+|++. ++ ..+..+.+. ..+.+++|+| +
T Consensus 76 ---~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-d 151 (347)
T 3hfq_A 76 ---HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-D 151 (347)
T ss_dssp ---EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-T
T ss_pred ---EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-C
Confidence 1233444567788899999998 677776 67999999996 23 233333221 2488999999 8
Q ss_pred CCEEEEEeCCCcEEEEeCC-CCeEEEe----ccCCCCeEEEEEeeCCCEEEE-EecCCcEEEEEcCC--Cceeee-EEee
Q 006909 321 DNYFISGSIDGKVRIWGVC-EKRVVDW----ADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASG--NDLKLE-KVDF 391 (626)
Q Consensus 321 ~~~l~s~s~dg~v~iwd~~-~~~~~~~----~~~~~~i~~i~~sp~g~~l~~-g~~dg~i~i~d~~~--~~~~~~-~~~~ 391 (626)
++++++...++.|++|++. ++++... ......+..++|+|+|+++++ +..++.+.+|++.. +..... ....
T Consensus 152 g~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 231 (347)
T 3hfq_A 152 NRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT 231 (347)
T ss_dssp SCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred CcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence 8866666678899999998 5554321 223346788999999997666 45678999999875 332111 1111
Q ss_pred ccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC---cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC-ccEE
Q 006909 392 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV---DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-CRVY 467 (626)
Q Consensus 392 ~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d-g~I~ 467 (626)
..........+..++|+|+|..++++...++.|.+|++. ..........+...+..++|+|+|++|++++.+ +.|.
T Consensus 232 ~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 311 (347)
T 3hfq_A 232 IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNAT 311 (347)
T ss_dssp SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEE
T ss_pred cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEE
Confidence 110001124588999999984344666778999999976 222222223345568899999999999888764 8999
Q ss_pred EEECC
Q 006909 468 VWNYD 472 (626)
Q Consensus 468 iwd~~ 472 (626)
+|+++
T Consensus 312 v~~~d 316 (347)
T 3hfq_A 312 LYARD 316 (347)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99664
No 146
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=8.7e-20 Score=199.66 Aligned_cols=259 Identities=12% Similarity=0.053 Sum_probs=180.5
Q ss_pred ccCcEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
+..+|++++|+|||++||+++. ||+++||++.++
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--------------------------------------------- 54 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--------------------------------------------- 54 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---------------------------------------------
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCC---------------------------------------------
Confidence 3567999999999999999887 999999998542
Q ss_pred CCceeeccCc-cceEEEEEcCCCeEEEEeC---CCcEEEeccCC---CeeeEeecCCCCeEEEEEeeCCCC-EEEEEeCC
Q 006909 259 SPLQELHGHK-GDVLDLAWSNSNYLLSCSM---DKTVRMWQVGC---NQCLNVFDHHNYVTCVQFNPIDDN-YFISGSID 330 (626)
Q Consensus 259 ~~~~~~~~h~-~~V~~l~~s~~~~l~s~s~---d~~v~iwd~~~---~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~s~d 330 (626)
....+..|. ..+..++|+|+..+++++. +...++|.+.. +... .+.....+...+|+| +++ .+++.+.+
T Consensus 55 -~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~-dg~~~~~~s~~~ 131 (582)
T 3o4h_A 55 -ETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVD-TGEAVVFTGATE 131 (582)
T ss_dssp -EEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEE-CSSCEEEEEECS
T ss_pred -CcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCC-CCCeEEEEecCC
Confidence 123344454 6899999999855555554 45566665432 2222 333333455778888 664 34444444
Q ss_pred CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC----CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 331 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
+.+.+||+.+++...+..+.. .+++|+|||++|++++.+ +.|++||+.++... .+. .+...+..++
T Consensus 132 ~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~--~l~------~~~~~~~~~~ 201 (582)
T 3o4h_A 132 DRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR--VFD------SGEGSFSSAS 201 (582)
T ss_dssp SCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE--EEC------CSSCEEEEEE
T ss_pred CCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce--Eee------cCCCccccce
Confidence 556699999988777665554 889999999999988877 78999999877643 221 2236789999
Q ss_pred EcCCCCcEEEEEeCCC--cEEEEeCCcceeeeeecCCCCCeEEEE--------EcCCCCEEEEEeCCccEEEEECCCCCC
Q 006909 407 FSRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSAS--------FTTTGKHIISIGDDCRVYVWNYDELCF 476 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~--------~sp~g~~l~s~s~dg~I~iwd~~~~~~ 476 (626)
|+||| ++|+++..++ .|++||....... ....+...+..++ |+|||.++++++.|+++++|++ +..
T Consensus 202 ~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~ 277 (582)
T 3o4h_A 202 ISPGM-KVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GER 277 (582)
T ss_dssp ECTTS-CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEE
T ss_pred ECCCC-CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCe
Confidence 99998 6788888888 8999998754444 3333555566666 9999999999999999999999 321
Q ss_pred CCCCccCCccceeeeccCCcEEEEecC
Q 006909 477 PSSKQKNSVRSCEHFFSEGVSVAVQWP 503 (626)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~g~~~av~~s 503 (626)
.. . .........|+ +|..++...+
T Consensus 278 ~~-~-~~~~v~~~~~s-dg~~l~~~s~ 301 (582)
T 3o4h_A 278 VE-A-PQGNHGRVVLW-RGKLVTSHTS 301 (582)
T ss_dssp EC-C-CSSEEEEEEEE-TTEEEEEEEE
T ss_pred ec-c-CCCceEEEEec-CCEEEEEEcC
Confidence 11 1 11223345666 6666544433
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.84 E-value=4.1e-19 Score=199.58 Aligned_cols=280 Identities=11% Similarity=0.100 Sum_probs=189.1
Q ss_pred ccccccccC---cEEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCC
Q 006909 174 SQEIQAHKG---CIWTLKFSPDGRYLASGGED---------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKK 241 (626)
Q Consensus 174 ~~~l~~H~~---~V~~l~fspdg~~Latgs~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (626)
.+.+.+|.. .|.+++|||||++||+++.+ +.|.+||+.++...
T Consensus 50 ~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------------------------- 104 (723)
T 1xfd_A 50 TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ------------------------- 104 (723)
T ss_dssp EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-------------------------
T ss_pred EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-------------------------
Confidence 344555654 49999999999999999875 77889999874321
Q ss_pred CCCceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCC---------
Q 006909 242 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY--------- 310 (626)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~--------- 310 (626)
.+....+|...+..++|+|+| .|++++. +.|++||+.+++...... +...
T Consensus 105 ------------------~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 165 (723)
T 1xfd_A 105 ------------------SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW 165 (723)
T ss_dssp ------------------ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCH
T ss_pred ------------------eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccce
Confidence 122223456668899999998 7777765 799999999888776554 2322
Q ss_pred ---------eEEEEEeeCCCCEEEEEeCCC----------------------------------cEEEEeCCCCeE-EEe
Q 006909 311 ---------VTCVQFNPIDDNYFISGSIDG----------------------------------KVRIWGVCEKRV-VDW 346 (626)
Q Consensus 311 ---------v~~~~~~p~~~~~l~s~s~dg----------------------------------~v~iwd~~~~~~-~~~ 346 (626)
+.+++|+| +++.|++++.++ .|++||+.+++. ..+
T Consensus 166 v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 166 LYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp HHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred eEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence 37899999 999999987653 799999988874 444
Q ss_pred ccC------CCCeEEEEEeeCCCEEEEEecC----CcEEEEEcCCCceeeeEEeeccccccCCCCe----EEEEEcCCCC
Q 006909 347 ADV------RDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKI----TGIQFSRDES 412 (626)
Q Consensus 347 ~~~------~~~i~~i~~sp~g~~l~~g~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i----~~l~~s~~~~ 412 (626)
..+ ...+..++|+|||+++++.... ..|++||+.+++........+ ...+ ..++|+|||.
T Consensus 245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------~~~~~~~~~~~~~spdg~ 318 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES------EAWLHRQNEEPVFSKDGR 318 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC------SSCCCCCCCCCEECTTSC
T ss_pred eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc------CCEEeccCCCceEcCCCC
Confidence 333 5678999999999988776543 579999998876432211111 1222 3789999985
Q ss_pred cEEEE-EeCCC------cEEEEe-CCcc----eeeeeecCCCCCeEE-EEEcCCCCEEEEEeCC---ccEEEEECCCCC-
Q 006909 413 QRIMI-TSEDS------KLRILD-GVDV----IHKFKGLPKSGSQMS-ASFTTTGKHIISIGDD---CRVYVWNYDELC- 475 (626)
Q Consensus 413 ~~l~~-~s~dg------~i~iwd-~~~~----~~~~~~~~~~~~v~~-~~~sp~g~~l~s~s~d---g~I~iwd~~~~~- 475 (626)
.++++ +..++ .|.+|| .... ...+. .+...+.. ++|+|+|++|+..+.+ +.+++|+++...
T Consensus 319 ~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 319 KFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp SEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred eEEEEEecccCCCcceeEEEEEeccCCCCccceeEee--cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 44444 55677 577777 3322 22222 12334444 6999999999866655 789999986431
Q ss_pred -CCCCCc----cCCccceeeeccCCcEEEEecCCCC
Q 006909 476 -FPSSKQ----KNSVRSCEHFFSEGVSVAVQWPGIG 506 (626)
Q Consensus 476 -~~~~~~----~~~~~~~~~~~~~g~~~av~~s~~~ 506 (626)
...... .........|+|+|..+++.++..+
T Consensus 397 ~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 432 (723)
T 1xfd_A 397 FNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG 432 (723)
T ss_dssp CCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred CCcceecccccCCCCeEEEEECCCCCEEEEEccCCC
Confidence 111111 1223445678888888887765443
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=3.9e-20 Score=207.79 Aligned_cols=330 Identities=10% Similarity=0.012 Sum_probs=198.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec
Q 006909 186 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 265 (626)
Q Consensus 186 ~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (626)
.++|+|||++++++ .|++|++||+.++.. ...+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~---------------------------------------------~~~~~ 53 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS---------------------------------------------YTILS 53 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCE---------------------------------------------EEEEC
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcE---------------------------------------------EEEEc
Confidence 78999999766654 699999999987432 23333
Q ss_pred cCcc---ceEEEEEcCCC-eEEEEeC---------CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 266 GHKG---DVLDLAWSNSN-YLLSCSM---------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 266 ~h~~---~V~~l~~s~~~-~l~s~s~---------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
+|.. .+.+++||||| +|++++. +++|++||+.+++.+........+..++|+| +|+.|+++. ++.
T Consensus 54 ~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SP-DG~~la~~~-~~~ 131 (719)
T 1z68_A 54 NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSP-VGSKLAYVY-QNN 131 (719)
T ss_dssp HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECS-STTCEEEEE-TTE
T ss_pred cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECC-CCCEEEEEE-CCe
Confidence 3333 48999999998 7777765 7899999999988732222346788999999 999999886 789
Q ss_pred EEEEeCCCCeEEEec--cCCCCe-----------------EEEEEeeCCCEEEEEecCC---------------------
Q 006909 333 VRIWGVCEKRVVDWA--DVRDVI-----------------SAICYIPDGKGFIVGSITG--------------------- 372 (626)
Q Consensus 333 v~iwd~~~~~~~~~~--~~~~~i-----------------~~i~~sp~g~~l~~g~~dg--------------------- 372 (626)
|++||+.+++...+. ++...+ .+++|+|||++|++++.|.
T Consensus 132 i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 211 (719)
T 1z68_A 132 IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN 211 (719)
T ss_dssp EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence 999999887766543 222212 4899999999999987652
Q ss_pred -------------cEEEEEcCCCcee-eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC----CcEEEEe----CC
Q 006909 373 -------------TCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED----SKLRILD----GV 430 (626)
Q Consensus 373 -------------~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d----g~i~iwd----~~ 430 (626)
.|++||+.++... ...+........+...+..++|+||+ +++++.... ..|.+|| ..
T Consensus 212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~ 290 (719)
T 1z68_A 212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQ 290 (719)
T ss_dssp EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCC
Confidence 7888998876532 00111101112345678999999996 666664332 2488899 65
Q ss_pred cceeeeee----cCCCCCeE-----EEEEcCCCCEEEE--EeCCc--cEEEEECCCCCCCCCCccCCccceeeeccCCcE
Q 006909 431 DVIHKFKG----LPKSGSQM-----SASFTTTGKHIIS--IGDDC--RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS 497 (626)
Q Consensus 431 ~~~~~~~~----~~~~~~v~-----~~~~sp~g~~l~s--~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~ 497 (626)
+....... ..+...+. .+.|+|||+.|+. ...+| .|++|++.++................+. ++..
T Consensus 291 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~ 369 (719)
T 1z68_A 291 TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDS 369 (719)
T ss_dssp SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSE
T ss_pred CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCE
Confidence 43221111 23555565 7899999996654 44454 6777787765321111111111112223 4443
Q ss_pred EEEecCC-----CCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccc-cCCC-CCCCCCCCcccC
Q 006909 498 VAVQWPG-----IGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS-ATWP-AEKLPLWDVTID 570 (626)
Q Consensus 498 ~av~~s~-----~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s-~~~~-d~~i~vwd~~~~ 570 (626)
+...... ....++.+......... ..+. ..+.++...+..+.|+|||++++. .+.+ ...+.+||+.++
T Consensus 370 i~~~~~~~~~~~~~~~l~~~~~~~g~~~~---~~l~--~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 370 LFYSSNEFEEYPGRRNIYRISIGSYPPSK---KCVT--CHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp EEEEESCGGGCTTCBEEEEEECSSSSCCE---EESS--TTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred EEEEEecCCCCCceEEEEEEeCCCCCCCc---eecc--CccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 3333332 23334433221100000 0000 001113344567889999997764 2221 134677887766
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=3.6e-19 Score=179.85 Aligned_cols=250 Identities=8% Similarity=-0.009 Sum_probs=172.6
Q ss_pred CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec-cCcc-ce
Q 006909 194 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GHKG-DV 271 (626)
Q Consensus 194 ~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~V 271 (626)
++|++++.++.|.+||+.+++. +..+. ++.. .+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~---------------------------------------------~~~~~~~~~~~~~ 36 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV---------------------------------------------DKVITIADAGPTP 36 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE---------------------------------------------EEEEECTTCTTCC
T ss_pred cEEEEcCCCCeEEEEECCCCcE---------------------------------------------EEEEEcCCCCCCc
Confidence 4789999999999999987432 22232 2221 47
Q ss_pred EEEEEcCCC-eE-EEEeCCCcEEEeccCCCeeeEeecCCC------CeEEEEEeeCCCCEEEEEe------------CCC
Q 006909 272 LDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHN------YVTCVQFNPIDDNYFISGS------------IDG 331 (626)
Q Consensus 272 ~~l~~s~~~-~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~------~v~~~~~~p~~~~~l~s~s------------~dg 331 (626)
..++|+|++ .+ ++++.++.|.+||+.+++.+..+.... .+.+++|+| +++++++++ .++
T Consensus 37 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCC
T ss_pred cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCc
Confidence 789999998 54 566678899999999999887775433 677899999 998888886 579
Q ss_pred cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 332 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 332 ~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
.|.+||+.+++..........+.+++|+|+|++++++ ++.|.+||+.+.+... .+..... .. .+.|+|++
T Consensus 116 ~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~-~~~~~~~----~~---~~~~s~dg 185 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVE-DKPIQSW----EA---ETYAQPDV 185 (337)
T ss_dssp EEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEE-EECSTTT----TT---TTBCCCBC
T ss_pred eEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEee-eeecccc----CC---CceeCCCc
Confidence 9999999998877666666678899999999988888 6899999998876532 2221110 11 22678887
Q ss_pred CcEEEEEeCCC-----------------------cEEEEeCCccee-eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEE
Q 006909 412 SQRIMITSEDS-----------------------KLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY 467 (626)
Q Consensus 412 ~~~l~~~s~dg-----------------------~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~ 467 (626)
..+++++..++ .|.+||..+... ......+...+.+++|+|+|++|+++ ++.|+
T Consensus 186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~ 263 (337)
T 1pby_B 186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLE 263 (337)
T ss_dssp CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEE
Confidence 43333333333 468999775432 22233355678899999999999988 79999
Q ss_pred EEECCCCCCCCCCccCCccceeeeccCCcEEEEe
Q 006909 468 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQ 501 (626)
Q Consensus 468 iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~ 501 (626)
+||+.++..............+.|+|+|..+.++
T Consensus 264 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 297 (337)
T 1pby_B 264 SFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG 297 (337)
T ss_dssp EEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred EEECCCCcCcceecCCCceeeEEECCCCCEEEEE
Confidence 9999876322111111222334455555544444
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=3.2e-19 Score=187.01 Aligned_cols=259 Identities=15% Similarity=0.153 Sum_probs=169.8
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
+...++.+++++++.+|++|+.|+ ++||+........ . .... .... ....
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~--~-~~~~------~~~~--------------------~~~~ 84 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQN--K-PGDD------PNKI--------------------VDKV 84 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCC--C-TTCC------TTCE--------------------EECC
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhc--c-cccC------cccc--------------------cccC
Confidence 344689999999999999999998 9999875421000 0 0000 0000 0011
Q ss_pred CceeeccCccceEEEEEcCCC-eEE----EEeCCCcEEEeccCCC--------ee---eEee-cCCCCeEEEEEeeCCCC
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLL----SCSMDKTVRMWQVGCN--------QC---LNVF-DHHNYVTCVQFNPIDDN 322 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~----s~s~d~~v~iwd~~~~--------~~---~~~~-~~~~~v~~~~~~p~~~~ 322 (626)
+... ..|...|.+++|+|++ +|+ +++.|++|+|||+.++ +. +..+ .|...|.+++|+|.+++
T Consensus 85 ~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 163 (434)
T 2oit_A 85 QGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS 163 (434)
T ss_dssp CCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT
T ss_pred cccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC
Confidence 1112 2467889999999998 777 7888999999998765 22 2333 37889999999994489
Q ss_pred EEEEEeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc-ccCCC
Q 006909 323 YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-KTSGN 400 (626)
Q Consensus 323 ~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~ 400 (626)
+|++++.||+|++||++++... ....|...|.+++|+|+|++|++|+.||.|++||++. ... ..+..+... ..|..
T Consensus 164 ~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~-~~~~~~~~~~~~~~~ 241 (434)
T 2oit_A 164 MVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEK-KVIPCPPFYESDHPV 241 (434)
T ss_dssp EEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CEE-EEECCCTTCCTTSCE
T ss_pred EEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-ccc-ccccCCcccCCCCce
Confidence 9999999999999999987554 4556788999999999999999999999999999983 222 122222111 12234
Q ss_pred CeEEEEEcCCCCcEEEE-EeCCC------cEEEEeCCcc----eeeeee---c-----CCCCCeEEEEEcCCCCEEEEEe
Q 006909 401 KITGIQFSRDESQRIMI-TSEDS------KLRILDGVDV----IHKFKG---L-----PKSGSQMSASFTTTGKHIISIG 461 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~-~s~dg------~i~iwd~~~~----~~~~~~---~-----~~~~~v~~~~~sp~g~~l~s~s 461 (626)
.|.+++|++++ .++++ +..+| .+++|++.+. ...+.. . ....+...+.+-++.+++++++
T Consensus 242 ~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s 320 (434)
T 2oit_A 242 RVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAAS 320 (434)
T ss_dssp EEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEE
T ss_pred eEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEec
Confidence 89999999986 44433 44443 3899997643 112111 1 1122223333336667666655
Q ss_pred C-CccEEEEECC
Q 006909 462 D-DCRVYVWNYD 472 (626)
Q Consensus 462 ~-dg~I~iwd~~ 472 (626)
. .+.|.|....
T Consensus 321 ~~s~dv~vl~~~ 332 (434)
T 2oit_A 321 AASTEVSILARQ 332 (434)
T ss_dssp TTCSBCEEEEEC
T ss_pred CCCCceeEEEec
Confidence 4 3446665543
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=5.3e-19 Score=178.60 Aligned_cols=234 Identities=10% Similarity=0.027 Sum_probs=173.1
Q ss_pred cEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 183 CIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 183 ~V~~l~fspdg~~L-atgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
.+..++|+|+|+++ ++++.++.|.+||+.+++..
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--------------------------------------------- 69 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL--------------------------------------------- 69 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE---------------------------------------------
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE---------------------------------------------
Confidence 47889999999866 45566789999999874321
Q ss_pred eeec-c----CccceEEEEEcCCC-eEEEEe------------CCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCE
Q 006909 262 QELH-G----HKGDVLDLAWSNSN-YLLSCS------------MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 323 (626)
Q Consensus 262 ~~~~-~----h~~~V~~l~~s~~~-~l~s~s------------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 323 (626)
..+. + |...+.+++|+|++ +|++++ .++.|.+||+.+++.+..+.....+.+++|+| ++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~ 148 (337)
T 1pby_B 70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSK 148 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSC
T ss_pred eeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECC-CCCE
Confidence 1111 1 23356789999998 777775 57999999999999888887777788999999 9988
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC------------------------cEEEEEc
Q 006909 324 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG------------------------TCHFYKA 379 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg------------------------~i~i~d~ 379 (626)
++++ ++.|++||+.+++.............+.|+|+|+.+++.+..+ .|.+||+
T Consensus 149 l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 149 LYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp EEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred EEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence 8877 6899999999988765443322112337899998776654333 4689999
Q ss_pred CCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEE
Q 006909 380 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS 459 (626)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 459 (626)
.+.+.. ...... +...+.+++|+|+| ++++++ ++.|.+||+.+........ ....+.+++|+|+|++|++
T Consensus 227 ~~~~~~--~~~~~~----~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~ 296 (337)
T 1pby_B 227 ETGEMA--MREVRI----MDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWL 296 (337)
T ss_dssp TTCCEE--EEEEEE----CSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEE
T ss_pred CCCCce--EeecCC----CCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEE
Confidence 887764 222211 23578899999998 567766 7999999987543322221 2356789999999999999
Q ss_pred EeCCccEEEEECCCC
Q 006909 460 IGDDCRVYVWNYDEL 474 (626)
Q Consensus 460 ~s~dg~I~iwd~~~~ 474 (626)
++.++.|++||+.++
T Consensus 297 ~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 297 GGALGDLAAYDAETL 311 (337)
T ss_dssp ESBSSEEEEEETTTC
T ss_pred EcCCCcEEEEECcCC
Confidence 999999999999875
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=3.1e-18 Score=174.27 Aligned_cols=202 Identities=15% Similarity=0.170 Sum_probs=140.2
Q ss_pred cCccceEEEEEcCCCeEEEEeC---CCcEEEeccCCCee--eEee-cCCCCeEEEEEeeCCCCEEEEEe-CCCcEEEEeC
Q 006909 266 GHKGDVLDLAWSNSNYLLSCSM---DKTVRMWQVGCNQC--LNVF-DHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGV 338 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~~l~s~s~---d~~v~iwd~~~~~~--~~~~-~~~~~v~~~~~~p~~~~~l~s~s-~dg~v~iwd~ 338 (626)
.+...+..++|+|++.|++++. ++.|.+|++.++.. +..+ .+...+..++|+| ++++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEe
Confidence 3456678899999996665554 68999999977663 3332 3667888999999 999888887 6789999999
Q ss_pred C-CCeEE--EeccC----------CCCeEEEEEeeCCCEEEEEecCCcEEEEEcC-CCceeee-EEeeccccccCCCCeE
Q 006909 339 C-EKRVV--DWADV----------RDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDLKLE-KVDFHDRKKTSGNKIT 403 (626)
Q Consensus 339 ~-~~~~~--~~~~~----------~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~-~~~~~~~-~~~~~~~~~~~~~~i~ 403 (626)
. .+... ..... ...+.+++|+|+|+.+++...++.|.+|++. ++..... ..... ....+.
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-----~g~~p~ 190 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME-----AGFGPR 190 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC-----TTCCEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC-----CCCCCc
Confidence 5 33322 21111 2248899999999966666678899999998 3333221 11111 124678
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCc--ce----eeeeecCC----CCCeEEEEEcCCCCEEE-EEeCCccEEEEECC
Q 006909 404 GIQFSRDESQRIMITSEDSKLRILDGVD--VI----HKFKGLPK----SGSQMSASFTTTGKHII-SIGDDCRVYVWNYD 472 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~--~~----~~~~~~~~----~~~v~~~~~sp~g~~l~-s~s~dg~I~iwd~~ 472 (626)
.++|+|+|..++++...++.|.+|+... .. ..+..... ...+..++|+|+|++|+ +...++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 8999999843555567789999998652 21 12222111 14588899999999884 55568999999986
Q ss_pred C
Q 006909 473 E 473 (626)
Q Consensus 473 ~ 473 (626)
.
T Consensus 271 ~ 271 (347)
T 3hfq_A 271 A 271 (347)
T ss_dssp G
T ss_pred C
Confidence 3
No 153
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=1.1e-18 Score=196.31 Aligned_cols=243 Identities=12% Similarity=0.117 Sum_probs=166.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909 183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 262 (626)
Q Consensus 183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (626)
...+++|+|||++|+++ ||+|++||+.++.. ..
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~---------------------------------------------~~ 50 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS---------------------------------------------SV 50 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE---------------------------------------------EE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCce---------------------------------------------EE
Confidence 45689999999999986 89999999988543 22
Q ss_pred eeccCc-----cceEEEEEcCCC-eEEEEeCC---------CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE
Q 006909 263 ELHGHK-----GDVLDLAWSNSN-YLLSCSMD---------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 263 ~~~~h~-----~~V~~l~~s~~~-~l~s~s~d---------~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 327 (626)
.+.+|. .....++||||| +|+.++.+ +.+.+||+.+++......+...+..++|+| +|+.|+.+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SP-dG~~la~~ 129 (740)
T 4a5s_A 51 FLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP-VGHKLAYV 129 (740)
T ss_dssp EECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS-STTCEEEE
T ss_pred EEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECC-CCCEEEEE
Confidence 233332 223458899998 77777765 566799999998876666788899999999 99999988
Q ss_pred eCCCcEEEEeCCCCeEEEecc--CCCCe-----------------EEEEEeeCCCEEEEEecCC----------------
Q 006909 328 SIDGKVRIWGVCEKRVVDWAD--VRDVI-----------------SAICYIPDGKGFIVGSITG---------------- 372 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~~~~--~~~~i-----------------~~i~~sp~g~~l~~g~~dg---------------- 372 (626)
. ++.|++||+.++....+.. +...+ .++.|+|||+.|+.++.|.
T Consensus 130 ~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~ 208 (740)
T 4a5s_A 130 W-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL 208 (740)
T ss_dssp E-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred E-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCC
Confidence 5 6899999998877665432 22222 3589999999999876432
Q ss_pred --------------------cEEEEEcCC---Cce-eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC----CCcE
Q 006909 373 --------------------TCHFYKASG---NDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE----DSKL 424 (626)
Q Consensus 373 --------------------~i~i~d~~~---~~~-~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~----dg~i 424 (626)
.|++||+.+ +.. ....+........+...+..++|+||| +.++.... +..|
T Consensus 209 ~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i 287 (740)
T 4a5s_A 209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVM 287 (740)
T ss_dssp SSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEE
T ss_pred CCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEE
Confidence 466777766 421 111111110001244678999999998 55554432 2479
Q ss_pred EEEeCCcce--------eeeeecCCCCCeE-----EEEEcCCCCEEE-EEeCC---ccEEEEECCCCC
Q 006909 425 RILDGVDVI--------HKFKGLPKSGSQM-----SASFTTTGKHII-SIGDD---CRVYVWNYDELC 475 (626)
Q Consensus 425 ~iwd~~~~~--------~~~~~~~~~~~v~-----~~~~sp~g~~l~-s~s~d---g~I~iwd~~~~~ 475 (626)
.+||..+.. ..+....+...+. ...|+|||+.|+ ..+.. ..|++||+.++.
T Consensus 288 ~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 288 DICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred EEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 999965432 2221122444443 688999999887 66643 579999998763
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=3.5e-17 Score=167.52 Aligned_cols=247 Identities=14% Similarity=0.149 Sum_probs=167.0
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 180 HKGCIWTLKFSPDGRYLASGGED----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
|...+..++|+|||++|++++.+ +.|.+|++......
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~--------------------------------------- 88 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT--------------------------------------- 88 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE---------------------------------------
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc---------------------------------------
Confidence 67778889999999999999886 79999998652000
Q ss_pred ccCCCceeeccCccceEEEEEcCCCeEEEEe-CCCcEEEeccCCCeeeEee----c-----------CCCCeEEEEEeeC
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNSNYLLSCS-MDKTVRMWQVGCNQCLNVF----D-----------HHNYVTCVQFNPI 319 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s-~d~~v~iwd~~~~~~~~~~----~-----------~~~~v~~~~~~p~ 319 (626)
...+.....+......+++ ...+|++++ .++.|.+|++.....+... . +...+.+++|+|
T Consensus 89 --~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp- 164 (361)
T 3scy_A 89 --LHLLNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP- 164 (361)
T ss_dssp --EEEEEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-
T ss_pred --EEEeeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-
Confidence 0112333345556777888 334555555 6889999999754332211 1 123458899999
Q ss_pred CCCEEEEEe-CCCcEEEEeCCCCe-------E-------EEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCc
Q 006909 320 DDNYFISGS-IDGKVRIWGVCEKR-------V-------VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGND 383 (626)
Q Consensus 320 ~~~~l~s~s-~dg~v~iwd~~~~~-------~-------~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~ 383 (626)
+++++++++ .++.|.+|++.... + .........+..++|+|+|+++++++ .++.|.+|++.++.
T Consensus 165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~ 244 (361)
T 3scy_A 165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM 244 (361)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence 998766555 47899999876432 1 22334456688999999999888877 68999999998664
Q ss_pred eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC--CCcEEEEeCC--cce-eeeeecCCCCCeEEEEEcCCCCEEE
Q 006909 384 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE--DSKLRILDGV--DVI-HKFKGLPKSGSQMSASFTTTGKHII 458 (626)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~--dg~i~iwd~~--~~~-~~~~~~~~~~~v~~~~~sp~g~~l~ 458 (626)
..... ... ....+...+..++|+|+| ++|+++.. ++.|.+|++. +.. ...........+..++|+|+|++|+
T Consensus 245 ~~~~~-~~~-~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~ 321 (361)
T 3scy_A 245 LDEIQ-TVA-ADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLL 321 (361)
T ss_dssp EEEEE-EEE-SCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEE
T ss_pred eEEeE-EEe-cCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEE
Confidence 42221 111 112223457899999998 56655555 5899999974 211 1221111245678999999999998
Q ss_pred EEe-CCccEEEEECC
Q 006909 459 SIG-DDCRVYVWNYD 472 (626)
Q Consensus 459 s~s-~dg~I~iwd~~ 472 (626)
+++ .++.|.+|+++
T Consensus 322 ~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 322 VACRDTNVIQIFERD 336 (361)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEEE
Confidence 887 57899997665
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.80 E-value=8e-18 Score=176.36 Aligned_cols=170 Identities=17% Similarity=0.145 Sum_probs=128.8
Q ss_pred cccCcEEEEEEcCCCCEEE----EEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 179 AHKGCIWTLKFSPDGRYLA----SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~La----tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
.|.+.|++++|+|+|++|| +|+.|++|+|||+.+..... ...
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~----------------------~~~------------ 135 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEA----------------------KQQ------------ 135 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTT----------------------CSS------------
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCC----------------------cCC------------
Confidence 4678899999999999999 78899999999987521000 000
Q ss_pred cccCCCceeeccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
......+..+.+|...|.+++|+|+ + +|++++.||+|++||++++..+... .|...|.+++|+| ++++|++|+.||
T Consensus 136 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg 214 (434)
T 2oit_A 136 KRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNG 214 (434)
T ss_dssp CCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTS
T ss_pred cceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCC
Confidence 0000113556689999999999997 4 8999999999999999988665433 5788999999999 999999999999
Q ss_pred cEEEEeCCCCeEEEeccC-------CCCeEEEEEeeCCCEEEEE-ecCC------cEEEEEcCCCc
Q 006909 332 KVRIWGVCEKRVVDWADV-------RDVISAICYIPDGKGFIVG-SITG------TCHFYKASGND 383 (626)
Q Consensus 332 ~v~iwd~~~~~~~~~~~~-------~~~i~~i~~sp~g~~l~~g-~~dg------~i~i~d~~~~~ 383 (626)
+|++||++.........+ ...+.+++|++++.++++. ..+| .+++|++....
T Consensus 215 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 215 TVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp CEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred cEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 999999984333332222 2379999999988777553 3343 38999998653
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=3.2e-18 Score=176.94 Aligned_cols=249 Identities=14% Similarity=0.098 Sum_probs=167.3
Q ss_pred ccccccccCcEEE-----EEEcCCCCEEEEEeC-CCc--EEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCc
Q 006909 174 SQEIQAHKGCIWT-----LKFSPDGRYLASGGE-DGV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV 245 (626)
Q Consensus 174 ~~~l~~H~~~V~~-----l~fspdg~~Latgs~-Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (626)
...|..|...+.. .+|||||++||.++. +|. |.+||+.++..
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~------------------------------ 72 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA------------------------------ 72 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE------------------------------
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce------------------------------
Confidence 3445667766666 899999999999887 674 77778876322
Q ss_pred eeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEE--EeeCCC
Q 006909 246 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ--FNPIDD 321 (626)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~p~~~ 321 (626)
.....+|...+..++|+|++ .|+.++.++.|++||+.+++....+. +...+.... ++| ++
T Consensus 73 ---------------~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg 136 (388)
T 3pe7_A 73 ---------------TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS-DC 136 (388)
T ss_dssp ---------------EECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT-TS
T ss_pred ---------------EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECC-CC
Confidence 22333455555567899998 88899989999999999998776665 334444343 477 88
Q ss_pred CEEEEEe----------------------CCCcEEEEeCCCCeEEEeccCCCCeEEEEEee-CCCEEEEEecC------C
Q 006909 322 NYFISGS----------------------IDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSIT------G 372 (626)
Q Consensus 322 ~~l~s~s----------------------~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~d------g 372 (626)
.+++... .+..|.+||+.+++...+..+...+..+.|+| +|+.|+....+ .
T Consensus 137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~ 216 (388)
T 3pe7_A 137 TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDA 216 (388)
T ss_dssp SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSC
T ss_pred CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcc
Confidence 8877432 34679999999998888878888899999999 99999887754 3
Q ss_pred cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEeCCccee-ee-eecCCC---C
Q 006909 373 TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS----KLRILDGVDVIH-KF-KGLPKS---G 443 (626)
Q Consensus 373 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg----~i~iwd~~~~~~-~~-~~~~~~---~ 443 (626)
.|.++|..+..... +.... ....+..+.|+|||..+++++..++ .|++||+..... .+ ....+. .
T Consensus 217 ~l~~~d~~~~~~~~--l~~~~----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 290 (388)
T 3pe7_A 217 RMWLINEDGTNMRK--VKTHA----EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMS 290 (388)
T ss_dssp SEEEEETTSCCCEE--SCCCC----TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEE
T ss_pred eEEEEeCCCCceEE--eeeCC----CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeee
Confidence 77788876554321 11110 0125778899999854434444322 399999875432 12 111100 0
Q ss_pred CeEEEEEcCCCCEEEEE---------eCCccEEEEECCCC
Q 006909 444 SQMSASFTTTGKHIISI---------GDDCRVYVWNYDEL 474 (626)
Q Consensus 444 ~v~~~~~sp~g~~l~s~---------s~dg~I~iwd~~~~ 474 (626)
....+.|+|||++|+.. ..+..|++||+.++
T Consensus 291 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 291 NYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp CTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred cCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 01123699999988854 45678999999886
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=4.8e-18 Score=172.55 Aligned_cols=235 Identities=9% Similarity=-0.007 Sum_probs=169.2
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec
Q 006909 186 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 265 (626)
Q Consensus 186 ~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (626)
.+++++++.++++++.++.|.+||+.+++. +..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------------------------------~~~~~ 38 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------------------------------YKSCV 38 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------------------------------EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------------------------------EEEEe
Confidence 456788899999999999999999987432 22333
Q ss_pred cCc-cceEEEEEcCCC-eE-EEEeCCCcEEEeccCCCeeeEeecCC-------CCeEEEEEeeCCCCEEEEEeCC-----
Q 006909 266 GHK-GDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHH-------NYVTCVQFNPIDDNYFISGSID----- 330 (626)
Q Consensus 266 ~h~-~~V~~l~~s~~~-~l-~s~s~d~~v~iwd~~~~~~~~~~~~~-------~~v~~~~~~p~~~~~l~s~s~d----- 330 (626)
.+. ..+..++|+|++ .+ +++..++.|.+||+.+++.+..+... ..+.+++|+| +++++++++.+
T Consensus 39 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~ 117 (349)
T 1jmx_B 39 MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLN 117 (349)
T ss_dssp CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECS
T ss_pred cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccc
Confidence 222 256789999998 44 45667899999999999888776532 2378899999 99999988865
Q ss_pred -------CcEEEEeCCCCeE---EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccc-c----
Q 006909 331 -------GKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-K---- 395 (626)
Q Consensus 331 -------g~v~iwd~~~~~~---~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-~---- 395 (626)
+.|.+||+.+++. .....+...+.+++|+|+|+ +++++ +.|.+||+.+.+.... +..... .
T Consensus 118 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~-~~~~~~~~~~~~ 193 (349)
T 1jmx_B 118 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVA-LPLRNWNRKGYS 193 (349)
T ss_dssp SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEE-ECSTTCCCTTBC
T ss_pred cccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceecc-ccccccCCcccc
Confidence 8999999987442 23334455688999999999 66654 4499999987654321 111100 0
Q ss_pred ---------------------------------------------------------ccCCCCeEEEEEcC-CCCcEEEE
Q 006909 396 ---------------------------------------------------------KTSGNKITGIQFSR-DESQRIMI 417 (626)
Q Consensus 396 ---------------------------------------------------------~~~~~~i~~l~~s~-~~~~~l~~ 417 (626)
......+.+++|+| ++ +++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~ 272 (349)
T 1jmx_B 194 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYG 272 (349)
T ss_dssp CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEE
T ss_pred CccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEE
Confidence 00112456788889 87 56776
Q ss_pred EeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 418 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 418 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+ ++.|.+||+.+........ ....+.+++|+|+|++|++++.++.|++||+.++
T Consensus 273 ~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 273 V--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp E--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred E--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 6 8899999987654322221 2345778999999999998888999999999875
No 158
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.79 E-value=4.1e-17 Score=166.00 Aligned_cols=235 Identities=7% Similarity=0.052 Sum_probs=168.6
Q ss_pred CcEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909 182 GCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 260 (626)
Q Consensus 182 ~~V~~l~fspdg~~La-tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (626)
..+..++|+|+|++++ ++..++.|.+||..+++..........
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~------------------------------------ 132 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDR------------------------------------ 132 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCC------------------------------------
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCC------------------------------------
Confidence 4477899999999555 445579999999987543211000000
Q ss_pred ceeeccCccceEEEEEcCCC-eEEEEe--CCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 261 LQELHGHKGDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s--~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
...-......+.+++|+|++ ++++++ .++.|.+||..+++.+..+. +...+.+++|+| +++++++++.++.|.+|
T Consensus 133 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~ 211 (353)
T 3vgz_A 133 KRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITI 211 (353)
T ss_dssp CCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEE
T ss_pred ccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEE
Confidence 00000011236889999987 555554 47889999999999998887 666789999999 99999999999999999
Q ss_pred eCCCCeEEEecc-----CCCCeEEEEEeeCCCEEEEEecC-CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 337 GVCEKRVVDWAD-----VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 337 d~~~~~~~~~~~-----~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
|+.+++...... +...+..++|+|+|+++++++.+ +.|.+||+.+.+.... +... ....++|+|+
T Consensus 212 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~~~--------~~~~~~~s~d 282 (353)
T 3vgz_A 212 DTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK-VAAP--------ESLAVLFNPA 282 (353)
T ss_dssp ETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE-EECS--------SCCCEEEETT
T ss_pred ECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE-EEcC--------CCceEEECCC
Confidence 999988765433 35568889999999988777654 8999999987765322 2221 1256899999
Q ss_pred CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909 411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD 463 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d 463 (626)
|..++++...++.|.+||..+........ ....+..++|+|+|++|+.+..+
T Consensus 283 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 283 RNEAYVTHRQAGKVSVIDAKSYKVVKTFD-TPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEEE-CCSEEEEEEECTTSCEEEEEEEC
T ss_pred CCEEEEEECCCCeEEEEECCCCeEEEEEe-cCCCCCeEEEcCCCCEEEEEEcc
Confidence 85455555579999999987544333222 34478899999999988777655
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=3.1e-17 Score=168.23 Aligned_cols=248 Identities=8% Similarity=0.026 Sum_probs=166.5
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT-SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
+...+..++|+|+|++|++++.+ .|.+|++. ++....
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~----------------------------------------- 75 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH----------------------------------------- 75 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-----------------------------------------
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-----------------------------------------
Confidence 34468899999999999999887 89999986 432110
Q ss_pred CCceeeccCccceEEEEEcCCCe---EEEEe-------------CCCcEEEeccC-CCeeeEeec-----CCCCeEEEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSNY---LLSCS-------------MDKTVRMWQVG-CNQCLNVFD-----HHNYVTCVQF 316 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~~---l~s~s-------------~d~~v~iwd~~-~~~~~~~~~-----~~~~v~~~~~ 316 (626)
+.....+ +.+.+++|+|+|. ++++. .++++.+|++. .++....+. +...+.+++|
T Consensus 76 --~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 152 (365)
T 1jof_A 76 --EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVF 152 (365)
T ss_dssp --EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEE
T ss_pred --eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEE
Confidence 0011111 1244578899884 33443 68999999997 465543332 4568999999
Q ss_pred eeCCCCEEEEEeC-CCcEEEEeCC-CCeEEEe--c---cCCCCeEEEEEeeCCCEEEEEec-CCcEEEEEcCC--Cceee
Q 006909 317 NPIDDNYFISGSI-DGKVRIWGVC-EKRVVDW--A---DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASG--NDLKL 386 (626)
Q Consensus 317 ~p~~~~~l~s~s~-dg~v~iwd~~-~~~~~~~--~---~~~~~i~~i~~sp~g~~l~~g~~-dg~i~i~d~~~--~~~~~ 386 (626)
+| ++++++++.. ++.|++||+. ++++... . .+...+..++|+|+|+++++++. ++.+.+|++.. +....
T Consensus 153 sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 231 (365)
T 1jof_A 153 DP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY 231 (365)
T ss_dssp CT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence 99 9998887764 6799999998 6665321 1 13567899999999999988775 68999998763 33321
Q ss_pred --eEEe-eccccccCCC------CeEEEE-EcCCCCcEEEEEeCC-C-----cEEEEeCC-cceee--ee-ecCCCCCeE
Q 006909 387 --EKVD-FHDRKKTSGN------KITGIQ-FSRDESQRIMITSED-S-----KLRILDGV-DVIHK--FK-GLPKSGSQM 446 (626)
Q Consensus 387 --~~~~-~~~~~~~~~~------~i~~l~-~s~~~~~~l~~~s~d-g-----~i~iwd~~-~~~~~--~~-~~~~~~~v~ 446 (626)
..+. .......+.. .+..++ |+||| ++|+++..+ + .|.+|++. +.... .. ...+...+.
T Consensus 232 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~ 310 (365)
T 1jof_A 232 THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH 310 (365)
T ss_dssp EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT
T ss_pred ccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcc
Confidence 1111 1110011111 588999 99998 566665543 3 89999975 22211 11 112344567
Q ss_pred EEEEcC---CCCEEEEEeCC-ccEEEEECCCC
Q 006909 447 SASFTT---TGKHIISIGDD-CRVYVWNYDEL 474 (626)
Q Consensus 447 ~~~~sp---~g~~l~s~s~d-g~I~iwd~~~~ 474 (626)
.++|+| +|++|++++.+ +.|.+|+++..
T Consensus 311 ~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 311 SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 789999 89999999865 89999998764
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.76 E-value=4.5e-18 Score=190.94 Aligned_cols=197 Identities=11% Similarity=0.157 Sum_probs=143.4
Q ss_pred EEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCC----CeEEEEEeeCCCCEEEEEeC---------CCcEEEEeCC
Q 006909 273 DLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN----YVTCVQFNPIDDNYFISGSI---------DGKVRIWGVC 339 (626)
Q Consensus 273 ~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~----~v~~~~~~p~~~~~l~s~s~---------dg~v~iwd~~ 339 (626)
+++|+|++.++..+.|++|++||+.+++....+.+.. .+.+++|+| ++++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6799999977777789999999999999887776433 389999999 9999998876 6899999999
Q ss_pred CCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc----cCC---------CCeEEEE
Q 006909 340 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK----TSG---------NKITGIQ 406 (626)
Q Consensus 340 ~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~---------~~i~~l~ 406 (626)
+++..........+..++|+|||+.|+.+. ++.|++|++.++.... +...+... ++. ....+++
T Consensus 99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~--l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ--ITFNGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE--CCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred CCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE--EecCCCcCCeEcccccceeeeecccCcccEE
Confidence 988732222335688999999999999885 7899999998765432 11111100 000 1225899
Q ss_pred EcCCCCcEEEEEeCCC----------------------------------cEEEEeCCccee----eee----ecCCCCC
Q 006909 407 FSRDESQRIMITSEDS----------------------------------KLRILDGVDVIH----KFK----GLPKSGS 444 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg----------------------------------~i~iwd~~~~~~----~~~----~~~~~~~ 444 (626)
|+||| ++|++++.|. .|++||+..... .+. ...+...
T Consensus 176 wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 176 WSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp ECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred ECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 99998 6788776542 788999875432 111 1236667
Q ss_pred eEEEEEcCCCCEEEEEeCC----ccEEEEE----CCCC
Q 006909 445 QMSASFTTTGKHIISIGDD----CRVYVWN----YDEL 474 (626)
Q Consensus 445 v~~~~~sp~g~~l~s~s~d----g~I~iwd----~~~~ 474 (626)
+..++|+||++++++.... ..|++|| +.++
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g 292 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW 292 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence 8999999998877775432 3588899 6665
No 161
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=2.2e-15 Score=148.61 Aligned_cols=246 Identities=10% Similarity=0.158 Sum_probs=176.3
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
.+|-..+.+++++|+|+++++...++.|.+||... .... .+..
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~-~~~~----------------------------------- 68 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKF-QFGE----------------------------------- 68 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEE-EECC-----------------------------------
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEE-Eecc-----------------------------------
Confidence 35667899999999999988888899999999763 1110 0000
Q ss_pred CCCceeeccCccceEEEEE-cCCCeEEEEeC--CCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 258 ESPLQELHGHKGDVLDLAW-SNSNYLLSCSM--DKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~-s~~~~l~s~s~--d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
.....+|...+..+++ .+++.|+.+.. ++.|.+|| .+++.+..+. +...+.+++++| +++++++...++.
T Consensus 69 ---~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~ 143 (286)
T 1q7f_A 69 ---CGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMR 143 (286)
T ss_dssp ---BSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTE
T ss_pred ---cCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCE
Confidence 0001235567889999 46776555553 78999999 5677776664 445789999999 8888888778899
Q ss_pred EEEEeCCCCeEEEec--cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 333 VRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 333 v~iwd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
|.+||........+. .....+..++++|+|+.+++...++.|++||..+... ..+...+ +...+.+++++++
T Consensus 144 i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~--~~~~~~g----~~~~p~~i~~d~~ 217 (286)
T 1q7f_A 144 VIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL--RQIGGEG----ITNYPIGVGINSN 217 (286)
T ss_dssp EEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE--EEESCTT----TSCSEEEEEECTT
T ss_pred EEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE--EEEccCC----ccCCCcEEEECCC
Confidence 999997654443332 3345689999999998777777899999999865322 1221111 1256899999999
Q ss_pred CCcEEEEEeCCC-cEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 411 ESQRIMITSEDS-KLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 411 ~~~~l~~~s~dg-~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
| +++++...++ .|.+||... ....+........+.+++++|+|+++++ +.|++|++|++..
T Consensus 218 G-~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 218 G-EILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp C-CEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred C-CEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 8 6777777775 999999653 3444444333445789999999987777 5799999999865
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.74 E-value=1.4e-15 Score=155.40 Aligned_cols=202 Identities=11% Similarity=0.102 Sum_probs=134.1
Q ss_pred CccceEEEEEcCCC-eEEEEeCC----CcEEEeccCC--Ceee--Eeec-CCCCeEEEEEeeCCCCEEEEEe-CCCcEEE
Q 006909 267 HKGDVLDLAWSNSN-YLLSCSMD----KTVRMWQVGC--NQCL--NVFD-HHNYVTCVQFNPIDDNYFISGS-IDGKVRI 335 (626)
Q Consensus 267 h~~~V~~l~~s~~~-~l~s~s~d----~~v~iwd~~~--~~~~--~~~~-~~~~v~~~~~~p~~~~~l~s~s-~dg~v~i 335 (626)
+...+..++|+|++ +|++++.+ +.|.+|++.. +... .... +......+++ +++++++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence 56777889999998 68888775 7999998865 4432 2232 4456677777 567666665 5789999
Q ss_pred EeCCCCeEE-Ee------cc--------CCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCce----e-eeEE-eecc
Q 006909 336 WGVCEKRVV-DW------AD--------VRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDL----K-LEKV-DFHD 393 (626)
Q Consensus 336 wd~~~~~~~-~~------~~--------~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~----~-~~~~-~~~~ 393 (626)
|++.....+ .. .+ +...+.+++|+|+|+++++++ .++.|.+|++..... . +... ....
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 998743221 11 11 123458899999999776655 478999999876542 1 1100 0000
Q ss_pred ccccCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEeCCcce----eeeee-cCCCCCeEEEEEcCCCCEEEEEeCC--cc
Q 006909 394 RKKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVDVI----HKFKG-LPKSGSQMSASFTTTGKHIISIGDD--CR 465 (626)
Q Consensus 394 ~~~~~~~~i~~l~~s~~~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~d--g~ 465 (626)
........+..++|+|+| +++++++ .++.|.+|++.... ..+.. ..+...+..++|+|||++|+++..+ +.
T Consensus 205 ~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~ 283 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG 283 (361)
T ss_dssp EECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred eecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence 011123567899999998 5665555 68999999976322 11211 2233457899999999999776654 89
Q ss_pred EEEEECC
Q 006909 466 VYVWNYD 472 (626)
Q Consensus 466 I~iwd~~ 472 (626)
|.+|+++
T Consensus 284 i~v~~~~ 290 (361)
T 3scy_A 284 VAIFKVD 290 (361)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.72 E-value=1.8e-16 Score=173.33 Aligned_cols=236 Identities=6% Similarity=0.034 Sum_probs=170.5
Q ss_pred ccccccc-CcEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 175 QEIQAHK-GCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 175 ~~l~~H~-~~V~~l~fspdg~~Latgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
+.+..|. ..|.+++|||| +++++++. +...+||.+.....
T Consensus 57 ~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~----------------------------------- 100 (582)
T 3o4h_A 57 VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP----------------------------------- 100 (582)
T ss_dssp EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST-----------------------------------
T ss_pred EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC-----------------------------------
Confidence 3344555 68999999999 88887775 45567766543000
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s 328 (626)
+... .+..+ ..+...+|+|++ .+++++.++.+.+||+.+++......+.. .+++|+| +|+++++++
T Consensus 101 -------g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~ 168 (582)
T 3o4h_A 101 -------GEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLG 168 (582)
T ss_dssp -------TCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEE
T ss_pred -------Cccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEE
Confidence 0011 11111 123345677665 44555555556699999998776665544 8899999 999999888
Q ss_pred CC----CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC--cEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909 329 ID----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKI 402 (626)
Q Consensus 329 ~d----g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i 402 (626)
.+ +.|++||+.+++...+..+...+..++|+|||+.|+++..++ .|++||+.++... ... .+...+
T Consensus 169 ~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~------~~~~~~ 240 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLE------LPSKDF 240 (582)
T ss_dssp EEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECC------CSCSHH
T ss_pred EcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--Ecc------CCCcCh
Confidence 77 789999999999888888889999999999999999888888 8999999887654 111 112344
Q ss_pred EEEE--------EcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc---cEEEEEC
Q 006909 403 TGIQ--------FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNY 471 (626)
Q Consensus 403 ~~l~--------~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg---~I~iwd~ 471 (626)
..+. |+||| .++++++.++++++|++ ... .. ...+.+.+++|+ +++++++++.+. .|++|+.
T Consensus 241 ~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~-~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GER-VE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp HHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEE-EC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred hhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCe-ec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 4455 99998 89999999999999998 221 11 234678899999 999999888774 5777776
Q ss_pred CC
Q 006909 472 DE 473 (626)
Q Consensus 472 ~~ 473 (626)
.+
T Consensus 314 ~~ 315 (582)
T 3o4h_A 314 GE 315 (582)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=2.9e-16 Score=159.28 Aligned_cols=189 Identities=8% Similarity=0.058 Sum_probs=137.5
Q ss_pred EEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCC--CeEEEEEeeCCCCEE-EEEeCCCcEEEEeCCCCeEEEeccC
Q 006909 274 LAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVVDWADV 349 (626)
Q Consensus 274 l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~ 349 (626)
+++++++ .+++++.+++|.+||+.+++.+..+.... .+..++|+| +++++ +++..++.|.+||+.+++.......
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 4566766 78889999999999999999988886555 688999999 88765 4555789999999998887654433
Q ss_pred C-------CCeEEEEEeeCCCEEEEEecC------------CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 350 R-------DVISAICYIPDGKGFIVGSIT------------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 350 ~-------~~i~~i~~sp~g~~l~~g~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
. ..+..++|+|+|+++++++.+ +.|.+||+.++........... ...+.+++|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~s~d 158 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-----PRQVYLMRAADD 158 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-----CSSCCCEEECTT
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-----CCcccceeECCC
Confidence 2 237889999999999998865 8999999987543221111111 245888999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCcce--eeeeecC------------------------------------------------
Q 006909 411 ESQRIMITSEDSKLRILDGVDVI--HKFKGLP------------------------------------------------ 440 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~------------------------------------------------ 440 (626)
| + +++++ +.|.+||..+.. ..+....
T Consensus 159 g-~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 159 G-S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp S-C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred C-c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 8 4 45543 349999976432 2221110
Q ss_pred ------------------CCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCCC
Q 006909 441 ------------------KSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 441 ------------------~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
....+..++|+| +|++++++ ++.|++||+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~ 285 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR 285 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC
Confidence 011345678889 99999988 889999999876
No 165
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.70 E-value=2.1e-16 Score=163.43 Aligned_cols=236 Identities=11% Similarity=0.103 Sum_probs=156.7
Q ss_pred CcEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 182 GCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
..+..++|||||++||.+... ..|.+||+.++..
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~------------------------------------------- 72 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA------------------------------------------- 72 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE-------------------------------------------
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE-------------------------------------------
Confidence 347788999999998877553 3678888876321
Q ss_pred CCceeeccCccc-eEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEE-------------------EEE
Q 006909 259 SPLQELHGHKGD-VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTC-------------------VQF 316 (626)
Q Consensus 259 ~~~~~~~~h~~~-V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~-------------------~~~ 316 (626)
..+..+... ...+.|+|++ .|+.++.++.|.+||+.+++...... +...... +.|
T Consensus 73 ---~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 149 (396)
T 3c5m_A 73 ---VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDW 149 (396)
T ss_dssp ---EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred ---EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcccccccccccc
Confidence 111222222 2337899998 78888888899999999887766554 3332222 245
Q ss_pred eeCCCCEEEEE-----eCCCcEEEEeCCCCeEEEeccCCCCeEEEEEee-CCCEEEEEecC------CcEEEEEcCCCce
Q 006909 317 NPIDDNYFISG-----SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSIT------GTCHFYKASGNDL 384 (626)
Q Consensus 317 ~p~~~~~l~s~-----s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~d------g~i~i~d~~~~~~ 384 (626)
+| +++.++.+ ..+..|.+||+.+++......+...+..+.|+| +++.|+..+.+ ..|.+||+.+...
T Consensus 150 sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (396)
T 3c5m_A 150 QP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV 228 (396)
T ss_dssp CC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred CC-CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence 56 66655543 345689999999988777777778899999999 88877776654 3588888865542
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEeCCccee-eeeecCCCCCeEEEEEcC-CCCEE
Q 006909 385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRILDGVDVIH-KFKGLPKSGSQMSASFTT-TGKHI 457 (626)
Q Consensus 385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-----g~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp-~g~~l 457 (626)
.. +... .....+..+.|+|+| ++|+.++.+ +.|++||+.+... .+... . ... +.|+| +|+++
T Consensus 229 ~~--l~~~----~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~-~~~-~~~s~~dg~~l 297 (396)
T 3c5m_A 229 RK--IKEH----AEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENEEVMVM--P-PCS-HLMSNFDGSLM 297 (396)
T ss_dssp EE--SSCC----CTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC--C-SEE-EEEECSSSSEE
T ss_pred eE--eecc----CCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeEEeeeC--C-CCC-CCccCCCCceE
Confidence 21 1101 001357889999998 455555433 4499999764432 22221 1 233 88999 99998
Q ss_pred EEEe----------------CCccEEEEECCCCC
Q 006909 458 ISIG----------------DDCRVYVWNYDELC 475 (626)
Q Consensus 458 ~s~s----------------~dg~I~iwd~~~~~ 475 (626)
++++ .+..|++||+.++.
T Consensus 298 ~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 298 VGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred EEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 8765 34789999998763
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.70 E-value=6.8e-16 Score=159.38 Aligned_cols=297 Identities=9% Similarity=0.004 Sum_probs=176.3
Q ss_pred CCCceeeccCccceEE-----EEEcCCC-eEEEEeC-CCc--EEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEE
Q 006909 258 ESPLQELHGHKGDVLD-----LAWSNSN-YLLSCSM-DKT--VRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~-----l~~s~~~-~l~s~s~-d~~--v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~ 327 (626)
+..+..+..|...... .+|+|+| +|+.++. ++. |.+||+.+++...... +...+..+.|+| +++.|+.+
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg~~l~~~ 98 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-DDDALFYV 98 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-TSSEEEEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-CCCEEEEE
Confidence 3445566666655555 7899998 6777776 664 8888999988877665 333444678999 99999999
Q ss_pred eCCCcEEEEeCCCCeEEEeccC-CCCeEEE--EEeeCCCEEEEEe----------------------cCCcEEEEEcCCC
Q 006909 328 SIDGKVRIWGVCEKRVVDWADV-RDVISAI--CYIPDGKGFIVGS----------------------ITGTCHFYKASGN 382 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~~~~~-~~~i~~i--~~sp~g~~l~~g~----------------------~dg~i~i~d~~~~ 382 (626)
+.++.|++||+.+++....... ...+... .++|+++.++... .+..|.+||+.++
T Consensus 99 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred eCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 9999999999999876654433 3333333 3489999887432 3467999999877
Q ss_pred ceeeeEEeeccccccCCCCeEEEEEcC-CCCcEEEEEeCC------CcEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCC
Q 006909 383 DLKLEKVDFHDRKKTSGNKITGIQFSR-DESQRIMITSED------SKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTG 454 (626)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~~l~~~s~d------g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g 454 (626)
+... +... ...+..++|+| +| ..|+....+ ..|.++|.... ...+........+..+.|+|||
T Consensus 179 ~~~~--l~~~------~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg 249 (388)
T 3pe7_A 179 ESTV--ILQE------NQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDG 249 (388)
T ss_dssp CEEE--EEEE------SSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTS
T ss_pred ceEE--eecC------CccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCC
Confidence 5422 2211 25689999999 87 667666553 37888886532 2222221111357788999999
Q ss_pred CEEEEEeCC-----ccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCC------CccccCcc
Q 006909 455 KHIISIGDD-----CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSS------SLRDCSQK 523 (626)
Q Consensus 455 ~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~------~~~~~~~~ 523 (626)
+.|+..+.+ ..|++||+.++........... ......+++. +|+|+|..++....+ .....+.+
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~----~~spdg~~l~~~~~~~~~~~~~~~~~i~~ 324 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC-SHLMSNYDGS----LMVGDGSDAPVDVQDDSGYKIENDPFLYV 324 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE-EEEEECTTSS----EEEEEECCC------------CCCCEEEE
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc-eeeeecCCCC----eEccCCCcceeEeeeccccccCCCCEEEE
Confidence 988665432 2499999988742111111100 0000011111 244444444322111 11122333
Q ss_pred ccccCCCC-cccCCCc-----------ccCCccccCCCCcccccCCCCCCCCCCCccc
Q 006909 524 WDNLETAP-WIRDSER-----------FSLGSWFSNDGPCRGSATWPAEKLPLWDVTI 569 (626)
Q Consensus 524 w~~~~~~~-~~~~~~~-----------~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~ 569 (626)
|+...... .+..+.. .+..++|||||+.++..+..++...+|.+..
T Consensus 325 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 325 FNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp EETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred EeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 33321111 1111111 4678899999998887665466677775443
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=2.3e-15 Score=167.11 Aligned_cols=247 Identities=9% Similarity=-0.007 Sum_probs=170.7
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEE--eCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASG--GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latg--s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
.+.+.+|...|..++|++++-++++. +.++...||....+.
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~------------------------------------- 58 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG------------------------------------- 58 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS-------------------------------------
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC-------------------------------------
Confidence 45577899999999999887777777 568899999864311
Q ss_pred ccccccCCCceeeccCccceE---------EEEEc--CCC-e-EEEEeC-CCcEEEeccC--C-CeeeEeec-----CCC
Q 006909 252 EVFQIEESPLQELHGHKGDVL---------DLAWS--NSN-Y-LLSCSM-DKTVRMWQVG--C-NQCLNVFD-----HHN 309 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~---------~l~~s--~~~-~-l~s~s~-d~~v~iwd~~--~-~~~~~~~~-----~~~ 309 (626)
....+..|...+. ...|+ ||| . |+.++. +..|.+|++. + +....... +..
T Consensus 59 --------~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~ 130 (662)
T 3azo_A 59 --------AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGL 130 (662)
T ss_dssp --------CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCE
T ss_pred --------CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCc
Confidence 1222233333333 44555 887 6 565543 5667777776 3 54443333 456
Q ss_pred CeEEEEEeeCCCCEEEEEeCC----------CcEEEEeCCC------CeEEEec-cCCCCeEEEEEeeCCCEEEEEecCC
Q 006909 310 YVTCVQFNPIDDNYFISGSID----------GKVRIWGVCE------KRVVDWA-DVRDVISAICYIPDGKGFIVGSITG 372 (626)
Q Consensus 310 ~v~~~~~~p~~~~~l~s~s~d----------g~v~iwd~~~------~~~~~~~-~~~~~i~~i~~sp~g~~l~~g~~dg 372 (626)
.+..++|+| +++.|++++.+ ..|++||+.+ ++...+. .+...+..++|+|||++|+.++.++
T Consensus 131 ~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~ 209 (662)
T 3azo_A 131 RWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDH 209 (662)
T ss_dssp EEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECT
T ss_pred cccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCC
Confidence 789999999 99999998877 5899999998 7777766 6667888899999999999887553
Q ss_pred --------cEEEEEcC-CCce-eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEeCCcce-eeeeec
Q 006909 373 --------TCHFYKAS-GNDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVI-HKFKGL 439 (626)
Q Consensus 373 --------~i~i~d~~-~~~~-~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg--~i~iwd~~~~~-~~~~~~ 439 (626)
.|++||+. ++.. ....+... +...+..+.|+|||. +++++..++ .|.+||..... ..+..
T Consensus 210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-----~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~- 282 (662)
T 3azo_A 210 PRMPWEGTELKTARVTEDGRFADTRTLLGG-----PEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCR- 282 (662)
T ss_dssp TCCTTTCEEEEEEEECTTSCEEEEEEEEEE-----TTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSC-
T ss_pred CCCCCCCcEEEEEEECCCCcccccEEeCCC-----CCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeeccc-
Confidence 79999998 4421 11122111 135789999999984 888888888 66666653322 11111
Q ss_pred CCCCC--------eEEEEEcCCCCEEEEEeCCccEEEE--ECCCC
Q 006909 440 PKSGS--------QMSASFTTTGKHIISIGDDCRVYVW--NYDEL 474 (626)
Q Consensus 440 ~~~~~--------v~~~~~sp~g~~l~s~s~dg~I~iw--d~~~~ 474 (626)
.+... +..++|+|+++++++++. +.++|| |+.++
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 11111 467899999999999998 999999 55544
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.69 E-value=4.5e-15 Score=151.62 Aligned_cols=249 Identities=12% Similarity=0.122 Sum_probs=165.4
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCC
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGE----------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 244 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (626)
.++..+..+ .++|+|||++|+++.. +++|.+||..+.+..
T Consensus 45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~---------------------------- 94 (361)
T 2oiz_A 45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE---------------------------- 94 (361)
T ss_dssp EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE----------------------------
T ss_pred EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE----------------------------
Confidence 345555555 8999999999998862 678999998764321
Q ss_pred ceeecCCccccccCCCceeec------cCccceEEEEEcCCC-eEEEEeC--CCcEEEeccCCCeeeEe-ecCCCCeEEE
Q 006909 245 VPVVIPDEVFQIEESPLQELH------GHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNV-FDHHNYVTCV 314 (626)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~------~h~~~V~~l~~s~~~-~l~s~s~--d~~v~iwd~~~~~~~~~-~~~~~~v~~~ 314 (626)
..+. .+......++++|+| +|+++.. +++|.+||+.+++.+.. +..... ..+
T Consensus 95 -----------------~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v 156 (361)
T 2oiz_A 95 -----------------KEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSV 156 (361)
T ss_dssp -----------------EEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEE
T ss_pred -----------------EEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-cee
Confidence 1111 122456678999998 6766653 68999999999999888 765443 335
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEeCCC-CeEEE------eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909 315 QFNPIDDNYFISGSIDGKVRIWGVCE-KRVVD------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 387 (626)
Q Consensus 315 ~~~p~~~~~l~s~s~dg~v~iwd~~~-~~~~~------~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~ 387 (626)
.+.|.....+++.+.||.+.+|+... ++... ..........+.++|++..++..+.++.+.++|+........
T Consensus 157 ~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~ 236 (361)
T 2oiz_A 157 IPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVD 236 (361)
T ss_dssp EECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEE
T ss_pred EEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceec
Confidence 67773447888899999999999865 55441 111111122334568888888888899999999976543322
Q ss_pred -EEeecccccc----CCCCeEEEEEcCCCCcEEEEEe----------CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcC
Q 006909 388 -KVDFHDRKKT----SGNKITGIQFSRDESQRIMITS----------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT 452 (626)
Q Consensus 388 -~~~~~~~~~~----~~~~i~~l~~s~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 452 (626)
.+........ .......++|+|++...+++.. ..+.|.+||+.+....-....+. +.+++|+|
T Consensus 237 ~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp 314 (361)
T 2oiz_A 237 GPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ 314 (361)
T ss_dssp EEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET
T ss_pred ccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC
Confidence 1111100000 0011223789999754444433 13589999987654443333343 89999999
Q ss_pred CCCEEEEEeCCccEEEEECCCC
Q 006909 453 TGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 453 ~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+|++|++++. +.|.+||..++
T Consensus 315 dg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 315 QRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTEEEEECS-SCEEEEECSSS
T ss_pred CCCEEEEeCC-CeEEEEECCCC
Confidence 9999999887 99999999886
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.68 E-value=7.3e-15 Score=150.49 Aligned_cols=229 Identities=8% Similarity=0.076 Sum_probs=150.1
Q ss_pred ccceEEEEEcCCC-eEEEEeCCCcEEEeccC-CCeeeEeecC--CCCeEEEEEeeCCCCE--EEEEe-------------
Q 006909 268 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG-CNQCLNVFDH--HNYVTCVQFNPIDDNY--FISGS------------- 328 (626)
Q Consensus 268 ~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~-~~~~~~~~~~--~~~v~~~~~~p~~~~~--l~s~s------------- 328 (626)
...+..++|+|++ +|++++.+ .|.+|++. +++......+ ...+.+++|+| ++++ ++++.
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeec
Confidence 3467889999998 68888887 99999997 7776554432 13456689999 8884 44553
Q ss_pred CCCcEEEEeCC-CCeEEEec-----cCCCCeEEEEEeeCCCEEEEEec-CCcEEEEEcC-CCceeee-EEeeccccccCC
Q 006909 329 IDGKVRIWGVC-EKRVVDWA-----DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKAS-GNDLKLE-KVDFHDRKKTSG 399 (626)
Q Consensus 329 ~dg~v~iwd~~-~~~~~~~~-----~~~~~i~~i~~sp~g~~l~~g~~-dg~i~i~d~~-~~~~~~~-~~~~~~~~~~~~ 399 (626)
.++++.+|++. .+++.... .+...+.+++|+|+|++++++.. ++.|++|++. +++.... ..... .+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~----~~g 192 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP----DPG 192 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS----STT
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC----CCC
Confidence 68999999997 45543222 24567999999999998887764 6799999998 5544221 11111 123
Q ss_pred CCeEEEEEcCCCCcEEEEEe-CCCcEEEEeCC--ccee-----eeeecCC-----CC------CeEEEE-EcCCCCEEEE
Q 006909 400 NKITGIQFSRDESQRIMITS-EDSKLRILDGV--DVIH-----KFKGLPK-----SG------SQMSAS-FTTTGKHIIS 459 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s-~dg~i~iwd~~--~~~~-----~~~~~~~-----~~------~v~~~~-~sp~g~~l~s 459 (626)
..+..++|+|+| +++++++ .++.|.+|+.. +... .+..... .. .+..++ |+|||++|++
T Consensus 193 ~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v 271 (365)
T 1jof_A 193 DHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp CCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence 568999999998 5666665 47899999753 2211 1222111 11 478999 9999999887
Q ss_pred EeCC-c-----cEEEEECC-CCCCCC----CCccCCccceeeecc---CCcEEEEecC
Q 006909 460 IGDD-C-----RVYVWNYD-ELCFPS----SKQKNSVRSCEHFFS---EGVSVAVQWP 503 (626)
Q Consensus 460 ~s~d-g-----~I~iwd~~-~~~~~~----~~~~~~~~~~~~~~~---~g~~~av~~s 503 (626)
++.+ + .|.+|+++ ++.... ..........++|+| +|..++++-.
T Consensus 272 ~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~ 329 (365)
T 1jof_A 272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD 329 (365)
T ss_dssp EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred ECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc
Confidence 6543 2 89999996 332211 000111223345667 6666666543
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=2.9e-14 Score=143.72 Aligned_cols=200 Identities=11% Similarity=0.075 Sum_probs=140.8
Q ss_pred cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe-eeEeec----------CCCCeEEEEEeeCCCCEEEEEe-CCCc
Q 006909 266 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-CLNVFD----------HHNYVTCVQFNPIDDNYFISGS-IDGK 332 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~-~~~~~~----------~~~~v~~~~~~p~~~~~l~s~s-~dg~ 332 (626)
++-.....+++++++ .+++...++.|++||..... .+..+. +......++++|.+++++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 344678899999988 66677778999999986542 444442 2336899999985577777775 6899
Q ss_pred EEEEeCCCCeEEEecc-----------CCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909 333 VRIWGVCEKRVVDWAD-----------VRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 400 (626)
Q Consensus 333 v~iwd~~~~~~~~~~~-----------~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 400 (626)
|++||.. +....... .-.....++++|+ +..+++...++.|++|+..+++... .+.. ..+..
T Consensus 168 I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~-~~~~----~~~~~ 241 (329)
T 3fvz_A 168 IVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR-EIKH----ASFGR 241 (329)
T ss_dssp EEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECC----TTTTT
T ss_pred EEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE-EEec----cccCC
Confidence 9999954 44443222 1234889999998 7777777788999999998555432 2211 12346
Q ss_pred CeEEEEEcCCCCcEEEEE-------eCCCcEEEEeCCcceeeeee---cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909 401 KITGIQFSRDESQRIMIT-------SEDSKLRILDGVDVIHKFKG---LPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~-------s~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd 470 (626)
.+..++|+| + ..+.+. ..+..|++||..+....... ..+...+..++++|+|.++++...++.|++|+
T Consensus 242 ~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 242 NVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp CEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred CcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 788999999 3 333333 33458999997654333222 23556789999999998888888899999999
Q ss_pred CCC
Q 006909 471 YDE 473 (626)
Q Consensus 471 ~~~ 473 (626)
+..
T Consensus 320 ~~~ 322 (329)
T 3fvz_A 320 LTE 322 (329)
T ss_dssp EEE
T ss_pred CCc
Confidence 875
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=5.2e-13 Score=134.60 Aligned_cols=242 Identities=10% Similarity=0.070 Sum_probs=164.0
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
..+.+|...+.+++|+|+|++++++..++.|.+||..++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~--------------------------------------- 78 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI--------------------------------------- 78 (333)
T ss_dssp EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---------------------------------------
T ss_pred EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---------------------------------------
Confidence 34556777889999999999888888899999999876321
Q ss_pred cccCCCceeeccCccceEEEEEcCCCeEE-EEeCC----CcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEEE
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNSNYLL-SCSMD----KTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS 326 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~~~l~-s~s~d----~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s 326 (626)
......+...+.++++++++.++ +...+ +.|.+||..++.....+. ....+.+++++| +++++++
T Consensus 79 ------~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~ 151 (333)
T 2dg1_A 79 ------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFT 151 (333)
T ss_dssp ------EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEE
T ss_pred ------EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEE
Confidence 11112355779999999998544 44444 589999998876653332 445789999999 8888877
Q ss_pred EeC------CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEE-ecCCcEEEEEcCCCceeeeEE--eecccccc
Q 006909 327 GSI------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKV--DFHDRKKT 397 (626)
Q Consensus 327 ~s~------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~ 397 (626)
... .+.|..+|..+++..........+..++|+|+|+.++++ +.++.|.+|++.......... ........
T Consensus 152 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 231 (333)
T 2dg1_A 152 DFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG 231 (333)
T ss_dssp ECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred eccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence 653 356777777766665544444568899999999866554 557899999996421111110 00000001
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-eeeeeecC----CCCCeEEEEEcCCCCEEEEEeCCc
Q 006909 398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLP----KSGSQMSASFTTTGKHIISIGDDC 464 (626)
Q Consensus 398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~----~~~~v~~~~~sp~g~~l~s~s~dg 464 (626)
...+..++++++| .++++...++.|.+||.... ...+.... +...+.+++|+|+++.|+.++.++
T Consensus 232 -~~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 232 -HEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp -SSEEEEEEEBTTC-CEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred -CCCCCceEECCCC-CEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 1467889999997 67777777899999997532 23333211 112588999999988777665553
No 172
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=2e-13 Score=135.22 Aligned_cols=239 Identities=10% Similarity=0.060 Sum_probs=168.8
Q ss_pred cccccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 175 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
..+..+.....+++|+|+|+ +++++..++.|..|+..++
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------------------------------------- 60 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------------------------------------- 60 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----------------------------------------
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----------------------------------------
Confidence 34445667788999999998 7888888999999998762
Q ss_pred ccccCCCceeeccCccceEEEEEcCCCeEEEE-eCCCcEEEeccCCCeeeEeec-----CCCCeEEEEEeeCCCCEEEEE
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSC-SMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~-s~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s~ 327 (626)
...+..+...+.++++++++.|+.+ ..++.|.+||..+++...... ....+..++++| +++++++.
T Consensus 61 -------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd 132 (296)
T 3e5z_A 61 -------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSD 132 (296)
T ss_dssp -------EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEE
T ss_pred -------eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEEC
Confidence 2334446677899999999854444 456899999998887654432 123567899999 99988873
Q ss_pred ----e-------------CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcC-CCce-eeeE
Q 006909 328 ----S-------------IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDL-KLEK 388 (626)
Q Consensus 328 ----s-------------~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~-~~~~-~~~~ 388 (626)
+ ..+.|..++.. ++.............++|+|+|+.+++.+.++.|.+|++. .+.. ....
T Consensus 133 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~ 211 (296)
T 3e5z_A 133 PTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGV 211 (296)
T ss_dssp CSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEE
T ss_pred CccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCe
Confidence 2 13467777766 6665556666778999999999999777778999999997 3332 1111
Q ss_pred EeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc-ceeeeeecCCCCCeEEEEE-cCCCCEEEEEeCCccE
Q 006909 389 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASF-TTTGKHIISIGDDCRV 466 (626)
Q Consensus 389 ~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~-sp~g~~l~s~s~dg~I 466 (626)
. +.. ....+.+++++++| +++++. ++.|.+||... ....+.. +.. +.+++| +|+++.|++++.+ .+
T Consensus 212 ~-~~~----~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~-~l 279 (296)
T 3e5z_A 212 H-FTV----EPGKTDGLRVDAGG-LIWASA--GDGVHVLTPDGDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVST-EF 279 (296)
T ss_dssp E-ECC----SSSCCCSEEEBTTS-CEEEEE--TTEEEEECTTSCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETT-EE
T ss_pred E-eeC----CCCCCCeEEECCCC-CEEEEc--CCeEEEECCCCCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCC-eE
Confidence 1 111 23556789999998 455444 88999999763 2233333 344 889999 6899999988876 45
Q ss_pred EEEECCCC
Q 006909 467 YVWNYDEL 474 (626)
Q Consensus 467 ~iwd~~~~ 474 (626)
..++..+.
T Consensus 280 ~~~~~~~~ 287 (296)
T 3e5z_A 280 WSIETNVR 287 (296)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 55566554
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=8.1e-14 Score=140.59 Aligned_cols=235 Identities=13% Similarity=0.115 Sum_probs=165.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
..|+++.|+|++..++..+.++.++.|.- ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~ 37 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA------------------------------------------------EPW 37 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC------------------------------------------------EEE
T ss_pred cccceeeecCCccceeEEeecccCccccc------------------------------------------------cee
Confidence 34777888888877777777888888821 224
Q ss_pred eeeccCccceEEEEEcCCCe-EEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCC----CcEEE
Q 006909 262 QELHGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID----GKVRI 335 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~~-l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~d----g~v~i 335 (626)
..+..+...+.+++|++++. ++++..++.|.+||..+++..... .+...+.+++++| +++++++...+ +.|.+
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEE
T ss_pred EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEE
Confidence 45556667789999999884 456778899999999988776554 4667899999999 88888877666 68999
Q ss_pred EeCCCCeEEEec---cCCCCeEEEEEeeCCCEEEEEec------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 336 WGVCEKRVVDWA---DVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 336 wd~~~~~~~~~~---~~~~~i~~i~~sp~g~~l~~g~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
||..++...... .....+..++++|+|+.+++... .+.|..++..+..... +... ...+..++
T Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~------~~~~~~i~ 188 (333)
T 2dg1_A 117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQN------ISVANGIA 188 (333)
T ss_dssp ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEE------ESSEEEEE
T ss_pred EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eecC------CCcccceE
Confidence 999887755322 23457899999999987766543 2455566555433321 1111 14578999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCc---ceeee-----eecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 407 FSRDESQRIMITSEDSKLRILDGVD---VIHKF-----KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg~i~iwd~~~---~~~~~-----~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
|+|+|..++++.+.++.|.+||... ....+ ........+..++++++|+++++...++.|.+||.+.
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g 263 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG 263 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC
Confidence 9999843455556788999999742 12111 1111124678899999999888888889999999854
No 174
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=2.1e-13 Score=152.50 Aligned_cols=242 Identities=12% Similarity=0.120 Sum_probs=167.3
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
+|+..+..++|||||++||.++.++ .|++||+.++...
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~------------------------------------- 164 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL------------------------------------- 164 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE-------------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------------------
Confidence 4666799999999999999876543 8999999875321
Q ss_pred ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCc----------------EEEeccCCCeee--Eeec---CCCCe
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT----------------VRMWQVGCNQCL--NVFD---HHNYV 311 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~----------------v~iwd~~~~~~~--~~~~---~~~~v 311 (626)
.... ....+..++|+||| .|+.++.++. |++|++.+++.. ..+. +...+
T Consensus 165 --------~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~ 235 (710)
T 2xdw_A 165 --------PDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM 235 (710)
T ss_dssp --------EEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred --------cccc-cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE
Confidence 1111 11236679999998 7888777766 999999887632 2222 45568
Q ss_pred EEEEEeeCCCCEEEEEeC-----CCcEEEEeCCC------C--eEEEeccCCCCeEEEEEeeCCCEEEEEecC----CcE
Q 006909 312 TCVQFNPIDDNYFISGSI-----DGKVRIWGVCE------K--RVVDWADVRDVISAICYIPDGKGFIVGSIT----GTC 374 (626)
Q Consensus 312 ~~~~~~p~~~~~l~s~s~-----dg~v~iwd~~~------~--~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d----g~i 374 (626)
..+.|+| ++++|+.++. +..|++||+.+ + ....+..+...+.. .|+|+|+.|+..+.. +.|
T Consensus 236 ~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l 313 (710)
T 2xdw_A 236 GGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRL 313 (710)
T ss_dssp EEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEE
T ss_pred EEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEE
Confidence 8999999 9999888765 56899999976 4 45555566555554 588999988877654 369
Q ss_pred EEEEcCCCce-eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCc--EEEEeCCcc--eeeeeecCCCCCeEEEE
Q 006909 375 HFYKASGNDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK--LRILDGVDV--IHKFKGLPKSGSQMSAS 449 (626)
Q Consensus 375 ~i~d~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~--i~iwd~~~~--~~~~~~~~~~~~v~~~~ 449 (626)
.+||+.+... ....+..+. ....+..+.|++++ .++++...++. |.+|+..+. ...+.. +.+.+..++
T Consensus 314 ~~~d~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~ 386 (710)
T 2xdw_A 314 INIDFTDPEESKWKVLVPEH----EKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGALLKIFPL--EVGSVVGYS 386 (710)
T ss_dssp EEEETTSCCGGGCEEEECCC----SSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCCEEEEECC--CSSEEEEEE
T ss_pred EEEeCCCCCcccceeccCCC----CCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCCEEEecCC--CCceEEEEe
Confidence 9999877642 112222111 01357889998665 67888888874 566676333 333333 466788899
Q ss_pred EcCCCCEEEEE-e---CCccEEEEECCCCC
Q 006909 450 FTTTGKHIISI-G---DDCRVYVWNYDELC 475 (626)
Q Consensus 450 ~sp~g~~l~s~-s---~dg~I~iwd~~~~~ 475 (626)
++|+++.++.. + ..++|++||+.++.
T Consensus 387 ~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 387 GQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred cCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 99999766633 2 34789999998764
No 175
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.59 E-value=1.8e-13 Score=139.74 Aligned_cols=267 Identities=10% Similarity=0.024 Sum_probs=161.1
Q ss_pred eeeccCccceEEEEEcCCC-eEEEEe----------CCCcEEEeccCCCeeeEeec-------CCCCeEEEEEeeCCCCE
Q 006909 262 QELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDNY 323 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~-~l~s~s----------~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~~p~~~~~ 323 (626)
..+..+..+ .++|+|++ +++++. .+++|.+||..+++.+..+. +......++++| ++++
T Consensus 45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~ 121 (361)
T 2oiz_A 45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-DGKF 121 (361)
T ss_dssp EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT-TSSE
T ss_pred EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC-CCCE
Confidence 344444444 89999998 666665 36789999999988887764 234567899999 9999
Q ss_pred EEEEeC--CCcEEEEeCCCCeEEEe-ccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCC
Q 006909 324 FISGSI--DGKVRIWGVCEKRVVDW-ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 399 (626)
Q Consensus 324 l~s~s~--dg~v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 399 (626)
|+++.. +++|.+||+.+++.+.. ...... ..+.+.|++ ..+++.+.||.+.+|++....................
T Consensus 122 l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~ 200 (361)
T 2oiz_A 122 IVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD 200 (361)
T ss_dssp EEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred EEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence 998874 57899999999988776 555433 235567765 6788889999999999865322221111000001111
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce----eeeeecC----C----CCCeEEEEEcCCCCEEEEEeC-----
Q 006909 400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVI----HKFKGLP----K----SGSQMSASFTTTGKHIISIGD----- 462 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~----~~~~~~~----~----~~~v~~~~~sp~g~~l~s~s~----- 462 (626)
.+ ..+.+++++ ..++..+.++.|.++|..... ..+.... . ......++|+|+++.++++..
T Consensus 201 ~~-~~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~ 278 (361)
T 2oiz_A 201 DP-IFIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE 278 (361)
T ss_dssp SC-BCSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred Cc-eEEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence 12 233346676 456667788999999975321 1111100 0 011223789999988887643
Q ss_pred ------CccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCC--CC--c
Q 006909 463 ------DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET--AP--W 532 (626)
Q Consensus 463 ------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~--~~--~ 532 (626)
.+.|.+||+.+........... ...++|+|+|..+.++ +. ..+.+|+.... .. .
T Consensus 279 ~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~-----------n~----~~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 279 GTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTL-----------DG----GNVNVYDISQPEPKLLRT 342 (361)
T ss_dssp TCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEE-----------CS----SCEEEEECSSSSCEEEEE
T ss_pred ccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEe-----------CC----CeEEEEECCCCcceeeEE
Confidence 3589999998863322221122 3334445554443333 21 33444444332 11 1
Q ss_pred ccCCCcccCCccccCCCC
Q 006909 533 IRDSERFSLGSWFSNDGP 550 (626)
Q Consensus 533 ~~~~~~~~~~~~~s~dg~ 550 (626)
+...+.....++++|||+
T Consensus 343 i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 343 IEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ETTSCSSEEEEEECCCSC
T ss_pred eccCCCCcEEEEecCCCC
Confidence 233455567788999986
No 176
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=5.5e-13 Score=129.93 Aligned_cols=238 Identities=11% Similarity=0.043 Sum_probs=168.0
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 183 CIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 183 ~V~~l~fspdg~~La-tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
...+++++|+|++++ +.+.++.|.+|+..+....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~--------------------------------------------- 59 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT--------------------------------------------- 59 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---------------------------------------------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---------------------------------------------
Confidence 688999999999777 5467889999986542110
Q ss_pred eeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006909 262 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 340 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~ 340 (626)
.....+...+.++++.+++.|+.+..++.|.+||..+....... .....+.+++++| +++++++...++.|.+|+..+
T Consensus 60 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~ 138 (270)
T 1rwi_B 60 VLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGS 138 (270)
T ss_dssp ECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTC
T ss_pred eEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCC
Confidence 00012234567899999885555555889999998765443222 2335789999999 888888777788999998765
Q ss_pred CeEEEe-ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909 341 KRVVDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 419 (626)
Q Consensus 341 ~~~~~~-~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s 419 (626)
...... ......+..++++|+|+.+++...++.|.+|+..+...... .. .....+.++++.++| .++++..
T Consensus 139 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~-----~~~~~p~~i~~d~~g-~l~v~~~ 210 (270)
T 1rwi_B 139 KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--PF-----TDITAPWGIAVDEAG-TVYVTEH 210 (270)
T ss_dssp CSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--CC-----SSCCSEEEEEECTTC-CEEEEET
T ss_pred ceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee--cc-----cCCCCceEEEECCCC-CEEEEEC
Confidence 543332 22234678899999998777766788999999876553221 11 112568899999997 6777777
Q ss_pred CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 420 EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 420 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.++.|.+|+............+...+.+++++++|+++++...++.|+++++...
T Consensus 211 ~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 211 NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 7899999997644333222223357899999999998888888999999998764
No 177
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.59 E-value=2.1e-13 Score=153.14 Aligned_cols=267 Identities=9% Similarity=0.061 Sum_probs=166.2
Q ss_pred EEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 184 IWTLKFSPDGRYLASGGED---------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 184 V~~l~fspdg~~Latgs~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
...++|||||++||.++.+ +.+.+||+.++.
T Consensus 64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~---------------------------------------- 103 (740)
T 4a5s_A 64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ---------------------------------------- 103 (740)
T ss_dssp CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE----------------------------------------
T ss_pred ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc----------------------------------------
Confidence 3458899999999999876 556799998742
Q ss_pred cccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--CCCCe-----------------EEE
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYV-----------------TCV 314 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v-----------------~~~ 314 (626)
...+..|...+...+||||| .|+.+ .++.|++|++.++...+... +...+ ..+
T Consensus 104 ------~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~ 176 (740)
T 4a5s_A 104 ------LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL 176 (740)
T ss_dssp ------ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred ------EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcce
Confidence 23355677789999999999 66666 57899999998887655332 22222 348
Q ss_pred EEeeCCCCEEEEEeCCC------------------------------------cEEEEeCCC---C---eEEEecc----
Q 006909 315 QFNPIDDNYFISGSIDG------------------------------------KVRIWGVCE---K---RVVDWAD---- 348 (626)
Q Consensus 315 ~~~p~~~~~l~s~s~dg------------------------------------~v~iwd~~~---~---~~~~~~~---- 348 (626)
.|+| |++.|+.++.|. +|++||+.+ + +...+..
T Consensus 177 ~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~ 255 (740)
T 4a5s_A 177 WWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM 255 (740)
T ss_dssp EECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred EECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence 9999 999999876332 488899988 7 4544432
Q ss_pred --CCCCeEEEEEeeCCCEEEEEecC----CcEEEEEcCCCc----eeee-EEeeccccccCCCC-----eEEEEEcCCCC
Q 006909 349 --VRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGND----LKLE-KVDFHDRKKTSGNK-----ITGIQFSRDES 412 (626)
Q Consensus 349 --~~~~i~~i~~sp~g~~l~~g~~d----g~i~i~d~~~~~----~~~~-~~~~~~~~~~~~~~-----i~~l~~s~~~~ 412 (626)
+...+..++|+|||+.++..... ..|.+||+.++. +... .+.... +... ...+.|+|||.
T Consensus 256 ~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~----~~~~v~~~~~~~p~fspDG~ 331 (740)
T 4a5s_A 256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMS----TTGWVGRFRPSEPHFTLDGN 331 (740)
T ss_dssp HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEEC----SSSCSSSSSCCCCEECTTSS
T ss_pred CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeecc----CCceEccCcCCCceEcCCCC
Confidence 66779999999999977665432 379999998876 2111 110011 1122 23678999985
Q ss_pred cEEEEEe-CCC--cEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC-------ccEEEEECCCCCCC--CCC
Q 006909 413 QRIMITS-EDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-------CRVYVWNYDELCFP--SSK 480 (626)
Q Consensus 413 ~~l~~~s-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d-------g~I~iwd~~~~~~~--~~~ 480 (626)
.+++..+ .+| .|++||........ .......+..+. .++++.|+..+.. ..|+..++.++... ...
T Consensus 332 ~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~ 409 (740)
T 4a5s_A 332 SFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSC 409 (740)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESST
T ss_pred EEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeecc
Confidence 4442554 444 67778865432221 111334455543 2446666554433 35555665543211 110
Q ss_pred c---cCCccceeeeccCCcEEEEecCC
Q 006909 481 Q---KNSVRSCEHFFSEGVSVAVQWPG 504 (626)
Q Consensus 481 ~---~~~~~~~~~~~~~g~~~av~~s~ 504 (626)
. .........|+|+|..+++.++.
T Consensus 410 ~~~~~~~~~~~~~~S~dg~~~~~~~s~ 436 (740)
T 4a5s_A 410 ELNPERCQYYSVSFSKEAKYYQLRCSG 436 (740)
T ss_dssp TTSTTTBCBEEEEECTTSSEEEEEECS
T ss_pred ccCCCCCceEEEEECCCCCEEEEEeCC
Confidence 0 11223345678888777666544
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.59 E-value=7.6e-15 Score=151.68 Aligned_cols=219 Identities=9% Similarity=-0.017 Sum_probs=139.5
Q ss_pred ceEEEEEcCCC-eEEEEeCC---CcEEEeccCCCeeeEeecCCCCe-EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 006909 270 DVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYV-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344 (626)
Q Consensus 270 ~V~~l~~s~~~-~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~ 344 (626)
.+..++|+|+| +|+.+... ..|.+||+.+++......+...+ ..+.|+| +++.|+.++.++.|++||+.+++..
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST-DERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT-TSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC-CCCEEEEEEcCCcEEEEECCCCCcE
Confidence 37788999998 55555432 36888899988776655444333 3478999 9999999999999999999988765
Q ss_pred EeccC-CCCeEE-------------------EEEeeCCCEEEEE-----ecCCcEEEEEcCCCceeeeEEeeccccccCC
Q 006909 345 DWADV-RDVISA-------------------ICYIPDGKGFIVG-----SITGTCHFYKASGNDLKLEKVDFHDRKKTSG 399 (626)
Q Consensus 345 ~~~~~-~~~i~~-------------------i~~sp~g~~l~~g-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 399 (626)
.+... ...... +.|+|+++.++.. ..+..|.+||+.++..... ... .
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~--~~~------~ 187 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI--HQD------T 187 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE--EEE------S
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee--ccC------C
Confidence 54442 221112 2456777666554 3556899999987654322 111 2
Q ss_pred CCeEEEEEcC-CCCcEEEEEeCC------CcEEEEeCCcce-eeeeecCCCCCeEEEEEcCCCCEEEEEeCC-----ccE
Q 006909 400 NKITGIQFSR-DESQRIMITSED------SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDD-----CRV 466 (626)
Q Consensus 400 ~~i~~l~~s~-~~~~~l~~~s~d------g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d-----g~I 466 (626)
..+..+.|+| ++ ..|+..+.+ ..|.+||..... ..+........+..++|+|+|++|+.++.+ +.|
T Consensus 188 ~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 188 AWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI 266 (396)
T ss_dssp SCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred cccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence 5788999999 66 556555543 368888875332 222211112357788999999988777544 459
Q ss_pred EEEECCCCCCCCCCccCCccceeeecc-CCcEEEE
Q 006909 467 YVWNYDELCFPSSKQKNSVRSCEHFFS-EGVSVAV 500 (626)
Q Consensus 467 ~iwd~~~~~~~~~~~~~~~~~~~~~~~-~g~~~av 500 (626)
++||+.++.......... .. ..|+| +|..++.
T Consensus 267 ~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~ 299 (396)
T 3c5m_A 267 YKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVG 299 (396)
T ss_dssp EEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEE
T ss_pred EEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEE
Confidence 999998763221111111 11 45666 6665554
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.57 E-value=2.3e-12 Score=138.43 Aligned_cols=326 Identities=13% Similarity=0.046 Sum_probs=201.6
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccc
Q 006909 191 PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGD 270 (626)
Q Consensus 191 pdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 270 (626)
|.+.++++...+++|.++|..+++. +..+.. ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v---------------------------------------------~~~i~~-g~~ 198 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEI---------------------------------------------KTVLDT-GYA 198 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCE---------------------------------------------EEEEEC-SSC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeE---------------------------------------------EEEEeC-CCC
Confidence 4556777888899999999987432 333332 234
Q ss_pred eEEEEEcCCC-eEEEEeCCCcEEEeccC--CCeeeEeecCCCCeEEEEEe----eCCCCEEEEEeC-CCcEEEEeCCCCe
Q 006909 271 VLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFN----PIDDNYFISGSI-DGKVRIWGVCEKR 342 (626)
Q Consensus 271 V~~l~~s~~~-~l~s~s~d~~v~iwd~~--~~~~~~~~~~~~~v~~~~~~----p~~~~~l~s~s~-dg~v~iwd~~~~~ 342 (626)
+..+.|+|++ ++++++.|+.|.+||+. +++.+..+........++|+ | ++++++++.. +++|.++|..+.+
T Consensus 199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~ 277 (567)
T 1qks_A 199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLE 277 (567)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCC
T ss_pred ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCc
Confidence 6689999998 78888999999999995 88888888766677899999 6 8988777654 5899999999887
Q ss_pred EEEeccC------------CCCeEEEEEeeCCCEEEEE-ecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 343 VVDWADV------------RDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 343 ~~~~~~~------------~~~i~~i~~sp~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
++..... ...+..+..++++..+++. ..+|.|.++|......... ..... ......+.|+|
T Consensus 278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v-~~i~~-----~~~~~d~~~~p 351 (567)
T 1qks_A 278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT-TEISA-----ERFLHDGGLDG 351 (567)
T ss_dssp EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE-EEEEC-----CSSEEEEEECT
T ss_pred EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee-eeeec-----cccccCceECC
Confidence 7654321 1257788888887665554 4568999999876542221 11111 24567889999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCcceee--eee---cCCCCCeEEEEEcCCCCEE-EEEe-CCccEEEEECCCCCCC---C-
Q 006909 410 DESQRIMITSEDSKLRILDGVDVIHK--FKG---LPKSGSQMSASFTTTGKHI-ISIG-DDCRVYVWNYDELCFP---S- 478 (626)
Q Consensus 410 ~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~---~~~~~~v~~~~~sp~g~~l-~s~s-~dg~I~iwd~~~~~~~---~- 478 (626)
+|..++++...+++|.++|+.+.... +.. .+|.+.-..+ ++|++..+ +++. .++.|.++|..+...+ .
T Consensus 352 dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~k 430 (567)
T 1qks_A 352 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWK 430 (567)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCE
Confidence 98544555557899999998754322 221 1233222222 58875544 4443 4689999999873211 0
Q ss_pred ---CCc-cCCccceeeeccCCcEEEEec--CCC-----CcccccccCCCccccCccccccCCC--CcccCCCcccCCccc
Q 006909 479 ---SKQ-KNSVRSCEHFFSEGVSVAVQW--PGI-----GTEQKSLCSSSLRDCSQKWDNLETA--PWIRDSERFSLGSWF 545 (626)
Q Consensus 479 ---~~~-~~~~~~~~~~~~~g~~~av~~--s~~-----~~~l~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~~~ 545 (626)
... .......+.++|++..+-+.. +|+ ...++........+....+..+... ..+...+..+..+.|
T Consensus 431 vv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (567)
T 1qks_A 431 ILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEF 510 (567)
T ss_dssp EEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEE
T ss_pred EEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeE
Confidence 000 011112245567776665544 333 2233333221000000000011000 001123446778899
Q ss_pred cCCCCcccccCC----CCCCCCCCCcccC
Q 006909 546 SNDGPCRGSATW----PAEKLPLWDVTID 570 (626)
Q Consensus 546 s~dg~~l~s~~~----~d~~i~vwd~~~~ 570 (626)
+|||+.+..+.| .++.|-++|..+.
T Consensus 511 ~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 511 NKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp CTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 999998776655 2578888888876
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=7.4e-13 Score=134.23 Aligned_cols=183 Identities=11% Similarity=0.071 Sum_probs=125.7
Q ss_pred cceEEEEEcCCC-eEEEEeCC---C--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC------------
Q 006909 269 GDVLDLAWSNSN-YLLSCSMD---K--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID------------ 330 (626)
Q Consensus 269 ~~V~~l~~s~~~-~l~s~s~d---~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d------------ 330 (626)
..+..++|+|+| .|+.++.+ + .|.+||+.+++......+.. +..++|+| +++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 467889999998 67766543 2 48888998888777666555 99999999 99988887642
Q ss_pred ---------------CcEEEEeCCCCeE-EEeccCCCCeEEEEEeeCCCEEEEEecCC-------cEEEEEcCCCceeee
Q 006909 331 ---------------GKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITG-------TCHFYKASGNDLKLE 387 (626)
Q Consensus 331 ---------------g~v~iwd~~~~~~-~~~~~~~~~i~~i~~sp~g~~l~~g~~dg-------~i~i~d~~~~~~~~~ 387 (626)
..|++||+.+++. ..+.. . .+..+.|+|+| .++++..++ ...+|.+.++.. .
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~ 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--E 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE--E
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce--E
Confidence 5699999998877 44444 4 78899999999 777776542 445555543322 1
Q ss_pred EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC--------CcEEEEeCCcceeeeeecCCCCCeEE-EEEcCCCCEEE
Q 006909 388 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--------SKLRILDGVDVIHKFKGLPKSGSQMS-ASFTTTGKHII 458 (626)
Q Consensus 388 ~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~ 458 (626)
.+... ..+..+ +|+| ++|+.++.+ ..|.+|| ......+ ...+...+.. +.|+ ++ +++
T Consensus 212 ~l~~~-------~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l-~~~~~~~~~~~~~~s-dg-~~~ 277 (347)
T 2gop_A 212 KMFEK-------VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD-GKEVMGI-LDEVDRGVGQAKIKD-GK-VYF 277 (347)
T ss_dssp EEEEE-------ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC-SSCEEES-STTCCSEEEEEEEET-TE-EEE
T ss_pred EeccC-------cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC-CCceEec-cccCCcccCCccEEc-Cc-EEE
Confidence 11111 234443 8998 556655533 4788888 3222222 2234566775 8999 88 889
Q ss_pred EEeCCccEEEEECCC
Q 006909 459 SIGDDCRVYVWNYDE 473 (626)
Q Consensus 459 s~s~dg~I~iwd~~~ 473 (626)
+++.++.++|| +.+
T Consensus 278 ~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 278 TLFEEGSVNLY-IWD 291 (347)
T ss_dssp EEEETTEEEEE-EES
T ss_pred EEecCCcEEEE-EcC
Confidence 99999999999 874
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.55 E-value=1.3e-13 Score=153.75 Aligned_cols=242 Identities=12% Similarity=0.059 Sum_probs=164.2
Q ss_pred cccCcEEEEEEcCCCCEEE-----EEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 179 AHKGCIWTLKFSPDGRYLA-----SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~La-----tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
+|+..+..++|||||++|| .|+.+..|++||+.++....
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------------------------------------ 161 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------------------------------------ 161 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------------------------------------
Confidence 5777899999999999999 44455789999998753210
Q ss_pred ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCc-------------EEEeccCCCee--eEeec---CCCCeEEE
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT-------------VRMWQVGCNQC--LNVFD---HHNYVTCV 314 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~-------------v~iwd~~~~~~--~~~~~---~~~~v~~~ 314 (626)
...+... ....++|+|+| .|+.++.|.. |++|++.+++. ...+. +...+..+
T Consensus 162 -------~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 162 -------VDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp -------SCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred -------CcccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 0011111 12578999998 7888888776 99999988762 22332 45678999
Q ss_pred EEeeCCCCEEEEEeCCC----cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec----CCcEEEEEcCCCcee-
Q 006909 315 QFNPIDDNYFISGSIDG----KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLK- 385 (626)
Q Consensus 315 ~~~p~~~~~l~s~s~dg----~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~----dg~i~i~d~~~~~~~- 385 (626)
.|+| ++++|+.++.++ .|++|+..+++...+..+...+....+ ++|. ++..+. ++.|.+||+.+....
T Consensus 233 ~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~ 309 (695)
T 2bkl_A 233 DLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS 309 (695)
T ss_dssp EECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred EECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC
Confidence 9999 999888877666 688888777776666666666666666 6777 555543 578999998765421
Q ss_pred eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC--c-ceeeeeecCCCCCeEEEEEcCCCCEEEEEe-
Q 006909 386 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--D-VIHKFKGLPKSGSQMSASFTTTGKHIISIG- 461 (626)
Q Consensus 386 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s- 461 (626)
...+..+. ....+..++|+ ++ .++++...|+..+||... . ....+.. ...+.+..++++|+++.|+...
T Consensus 310 ~~~l~~~~----~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~s 382 (695)
T 2bkl_A 310 WKEIVPED----SSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKPVRTVQL-PGVGAASNLMGLEDLDDAYYVFT 382 (695)
T ss_dssp CEEEECCC----SSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCEEEECCC-SSSSEECCCBSCTTCSEEEEEEE
T ss_pred CeEEecCC----CCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCeeEEecC-CCCeEEEEeecCCCCCEEEEEEc
Confidence 11221111 12467888888 43 688888999988887533 2 1222222 1255677788899998776332
Q ss_pred ---CCccEEEEECCCCC
Q 006909 462 ---DDCRVYVWNYDELC 475 (626)
Q Consensus 462 ---~dg~I~iwd~~~~~ 475 (626)
..++|++||+.++.
T Consensus 383 s~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 383 SFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp ETTEEEEEEEEETTTCC
T ss_pred CCCCCCEEEEEECCCCc
Confidence 35789999998763
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=2e-11 Score=120.47 Aligned_cols=239 Identities=8% Similarity=0.053 Sum_probs=169.3
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256 (626)
Q Consensus 177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (626)
+..+...+.+++++++|+++++...++.|.+||.. +....
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~--------------------------------------- 49 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE--------------------------------------- 49 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE---------------------------------------
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE---------------------------------------
Confidence 33556789999999999988877667889999876 32110
Q ss_pred cCCCceeeccCccceEEEEEcCCCeEE-EEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 257 EESPLQELHGHKGDVLDLAWSNSNYLL-SCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
..+..+...+.++++.+++.+. +...++.|..||.. ++. ..+. ....+.++++.| ++.++++...++.
T Consensus 50 -----~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~ 121 (299)
T 2z2n_A 50 -----YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNR 121 (299)
T ss_dssp -----EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTE
T ss_pred -----ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCce
Confidence 0111234678899999988544 44457889999986 333 2232 445789999998 8888888777889
Q ss_pred EEEEeCCCCeEEEec--cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 333 VRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 333 v~iwd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
|..||. +++..... .....+..+++.++|+.+++...++.|..||. ++.... .... .....+.++++.++
T Consensus 122 i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i~~~~~ 193 (299)
T 2z2n_A 122 IGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE--FKIP----TPASGPVGITKGND 193 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEEEECTT
T ss_pred EEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE--eeCC----CCCCcceeEEECCC
Confidence 999998 55544332 23467899999999987777767789999998 444321 1111 12356889999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909 411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~ 472 (626)
| .++++...++.|.+||.......+........+.+++++++|+..++...++.|.+||..
T Consensus 194 g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 194 D-ALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp S-SEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred C-CEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 7 566666678899999984333333333345678999999999977776678899999984
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.55 E-value=6.2e-13 Score=134.78 Aligned_cols=220 Identities=12% Similarity=0.172 Sum_probs=147.0
Q ss_pred CcEEEEEEcCCCCEEEEEeCC---Cc--EEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909 182 GCIWTLKFSPDGRYLASGGED---GV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latgs~D---g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (626)
..+..++|||||++||.++.+ +. |.+|++.++..
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~----------------------------------------- 97 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS----------------------------------------- 97 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE-----------------------------------------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce-----------------------------------------
Confidence 458889999999999988754 33 67777765321
Q ss_pred cCCCceeeccCccceEEEEEcCCC-eEEEEeC---------------------------CCcEEEeccCCCeeeEeecCC
Q 006909 257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSM---------------------------DKTVRMWQVGCNQCLNVFDHH 308 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~---------------------------d~~v~iwd~~~~~~~~~~~~~ 308 (626)
..+..+.. +..++|+|++ .|+.++. ...|.+||+.+++.+..+...
T Consensus 98 -----~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~ 171 (347)
T 2gop_A 98 -----KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP 171 (347)
T ss_dssp -----EEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE
T ss_pred -----EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC
Confidence 12222233 8999999998 6776653 257999999988773444323
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCC---------cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC--------
Q 006909 309 NYVTCVQFNPIDDNYFISGSIDG---------KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-------- 371 (626)
Q Consensus 309 ~~v~~~~~~p~~~~~l~s~s~dg---------~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-------- 371 (626)
.+..++|+| ++ +++++..++ .|.++| +++...+..+ ..+..+ +|+|+.|+.++.+
T Consensus 172 -~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~ 243 (347)
T 2gop_A 172 -RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEH 243 (347)
T ss_dssp -TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSS
T ss_pred -CcccccCCC-Ce-EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEEEEccccCCcccc
Confidence 788999999 88 777776542 355555 6665555544 445544 9999999887754
Q ss_pred CcEEEEEcCCCceeeeEEeeccccccCCCCeEE-EEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEE
Q 006909 372 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG-IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASF 450 (626)
Q Consensus 372 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 450 (626)
..|.+|| ++... .+ ...+...+.. +.|+ ++ ++++++.++.++|| +.+... .....+...|.+++|
T Consensus 244 ~~l~~~d--~~~~~--~l-----~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~ 309 (347)
T 2gop_A 244 NKLYIYD--GKEVM--GI-----LDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDV 309 (347)
T ss_dssp CEEEEEC--SSCEE--ES-----STTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEE
T ss_pred ceEEEEC--CCceE--ec-----cccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeee
Confidence 3677777 33221 11 1112356776 8999 75 88889999999999 753221 222234677899999
Q ss_pred cCCCCEEEEEeCCccE-EEEECC
Q 006909 451 TTTGKHIISIGDDCRV-YVWNYD 472 (626)
Q Consensus 451 sp~g~~l~s~s~dg~I-~iwd~~ 472 (626)
+| .++++++.++.. .+|.++
T Consensus 310 s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 310 DE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp SS--SEEEEEECSSSCCEEEEES
T ss_pred eC--cEEEEEcCCCChHHheEeC
Confidence 99 677777777654 677665
No 184
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.55 E-value=2.1e-13 Score=151.40 Aligned_cols=202 Identities=9% Similarity=0.004 Sum_probs=134.8
Q ss_pred CccceEEEEEcCCC-eEEEEeCC----------CcEEEeccCC------CeeeEee-cCCCCeEEEEEeeCCCCEEEEEe
Q 006909 267 HKGDVLDLAWSNSN-YLLSCSMD----------KTVRMWQVGC------NQCLNVF-DHHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 267 h~~~V~~l~~s~~~-~l~s~s~d----------~~v~iwd~~~------~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s 328 (626)
|...+..++|+|+| .|++++.+ ..|++||+.+ +...... .+...+..++|+| ++++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEE
Confidence 66788999999998 78877776 5899999988 6666555 5667788899999 999999887
Q ss_pred CCC--------cEEEEeCC-CC---eEEEecc-CCCCeEEEEEeeCCCEEEEEecCC--cEEEEEcCCCceeeeEEeecc
Q 006909 329 IDG--------KVRIWGVC-EK---RVVDWAD-VRDVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHD 393 (626)
Q Consensus 329 ~dg--------~v~iwd~~-~~---~~~~~~~-~~~~i~~i~~sp~g~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~~~ 393 (626)
.++ .|++||+. ++ +...+.. +...+..+.|+|||++++++..++ .|.+||+.++.... ....+.
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~ 285 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ-LCRREE 285 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE-SSCCSS
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee-cccccc
Confidence 553 79999998 56 5555444 467899999999999888888888 55555554443221 111111
Q ss_pred cccc--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEE--eCCcc-eeeeeecCCCCCeEEE-EEcCCCCEEEEEeCCc--c
Q 006909 394 RKKT--SGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVDV-IHKFKGLPKSGSQMSA-SFTTTGKHIISIGDDC--R 465 (626)
Q Consensus 394 ~~~~--~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw--d~~~~-~~~~~~~~~~~~v~~~-~~sp~g~~l~s~s~dg--~ 465 (626)
.... -.-.+..++|+|++ .++++++. +.++|| |.... ...+. .+...+..+ +++++.-++++++.+. .
T Consensus 286 ~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~~~~l~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 361 (662)
T 3azo_A 286 EFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGELVDAA--GPWTEWAATLTVSGTRAVGVAASPRTAYE 361 (662)
T ss_dssp BSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTEEEECC--SSCCEEEEEEEEETTEEEEEEEETTEEEE
T ss_pred cccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCcEEEec--CCCCeEEEEEecCCCEEEEEEcCCCCCCE
Confidence 0000 00115678999987 68888888 999999 54422 23332 245556666 4443333344455554 5
Q ss_pred EEEEECCCC
Q 006909 466 VYVWNYDEL 474 (626)
Q Consensus 466 I~iwd~~~~ 474 (626)
|++||+.++
T Consensus 362 i~~~d~~~g 370 (662)
T 3azo_A 362 VVELDTVTG 370 (662)
T ss_dssp EEEEETTTC
T ss_pred EEEEECCCC
Confidence 666676665
No 185
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.54 E-value=2.2e-12 Score=129.96 Aligned_cols=204 Identities=12% Similarity=0.116 Sum_probs=145.2
Q ss_pred ccceEEEEEcCCC-eEEEEeCC------------------------CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCC
Q 006909 268 KGDVLDLAWSNSN-YLLSCSMD------------------------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID 320 (626)
Q Consensus 268 ~~~V~~l~~s~~~-~l~s~s~d------------------------~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~ 320 (626)
-+.+.+++++|+| ++++...+ ++|.+||..+++.+..+. +-..+..++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4679999999998 45555555 379999999998887775 345789999999 9
Q ss_pred CCEEEEEeCCCcEEEEeCCCC--eEEEe---------ccCCCCeEEEEEee-CCCEEEEEe-cCCcEEEEEcCCCceeee
Q 006909 321 DNYFISGSIDGKVRIWGVCEK--RVVDW---------ADVRDVISAICYIP-DGKGFIVGS-ITGTCHFYKASGNDLKLE 387 (626)
Q Consensus 321 ~~~l~s~s~dg~v~iwd~~~~--~~~~~---------~~~~~~i~~i~~sp-~g~~l~~g~-~dg~i~i~d~~~~~~~~~ 387 (626)
++++++...++.|++||.... .+..+ ..+-.....++++| +|+.+++.+ .++.|++|+..+. ...
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~-~~~- 179 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK-FVT- 179 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC-EEE-
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC-EEE-
Confidence 998888888999999998765 23333 23334688999999 788777776 6899999995433 222
Q ss_pred EEeecccc----ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCCCCEEEEE-
Q 006909 388 KVDFHDRK----KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI- 460 (626)
Q Consensus 388 ~~~~~~~~----~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~- 460 (626)
.+...+.. ......+.+++++|++..++++...++.|++||.. +....+....+...+..++|+| +..+++.
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence 22111110 11124588999999844778888889999999976 3344444444667788999999 4333333
Q ss_pred ------eCCccEEEEECCCCC
Q 006909 461 ------GDDCRVYVWNYDELC 475 (626)
Q Consensus 461 ------s~dg~I~iwd~~~~~ 475 (626)
..+..|++|++.++.
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCC
T ss_pred CEEeccCCCcEEEEEEcCCCe
Confidence 345589999988763
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=2.1e-12 Score=130.00 Aligned_cols=233 Identities=6% Similarity=-0.012 Sum_probs=163.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
.....+.+. +++++++...++.|.+||..+++. +
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~---------------------------------------------~ 77 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE---------------------------------------------V 77 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE---------------------------------------------E
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE---------------------------------------------E
Confidence 446777774 455566666689999999987432 3
Q ss_pred eeeccCccceEEEEEcCCCeEEEEe-CCCcEEEeccCCCeeeEeecCCC------CeEEEEEeeCCCCEEEEEe-CCCcE
Q 006909 262 QELHGHKGDVLDLAWSNSNYLLSCS-MDKTVRMWQVGCNQCLNVFDHHN------YVTCVQFNPIDDNYFISGS-IDGKV 333 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~~l~s~s-~d~~v~iwd~~~~~~~~~~~~~~------~v~~~~~~p~~~~~l~s~s-~dg~v 333 (626)
.++. .......+++++++.++.+. .++.|.+||..+++....+.... ....+++ . ++..+++.. .++.|
T Consensus 78 ~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v 154 (328)
T 3dsm_A 78 GRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRI 154 (328)
T ss_dssp EEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEE
T ss_pred EEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEE
Confidence 3332 23567889998888666655 88999999999999887775443 5667777 3 555555543 48899
Q ss_pred EEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC----------CcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909 334 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT----------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 334 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~ 403 (626)
.++|+.++++............+.++|+|++++++..+ +.|.++|..+.+... .+.... .....
T Consensus 155 ~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~-~~~~~~-----g~~p~ 228 (328)
T 3dsm_A 155 LKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK-QFKFKL-----GDWPS 228 (328)
T ss_dssp EEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE-EEECCT-----TCCCE
T ss_pred EEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE-EEecCC-----CCCce
Confidence 99999998887766555667789999999876666554 789999998776432 222221 24688
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCcceee-ee-ecCCCCCeEEEEEcC-CCCEEEEE----eCCccEEEEECC
Q 006909 404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FK-GLPKSGSQMSASFTT-TGKHIISI----GDDCRVYVWNYD 472 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~-~~~~~~~v~~~~~sp-~g~~l~s~----s~dg~I~iwd~~ 472 (626)
.++++|++ .+++++.. .|.+||..+.... .. ..........++++| ++...++. ..++.|.+||.+
T Consensus 229 ~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 229 EVQLNGTR-DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEECTTS-CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred eEEEecCC-CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 99999997 56666554 8999997643321 11 111145788999999 55555665 568999999988
No 187
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.52 E-value=1e-11 Score=123.71 Aligned_cols=245 Identities=13% Similarity=0.139 Sum_probs=166.9
Q ss_pred ccCcEEEEEEcCCCCEEEE-------EeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 180 HKGCIWTLKFSPDGRYLAS-------GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Lat-------gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
.-....+++|+++|+++++ +..++.|.+||..++......
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~--------------------------------- 62 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC--------------------------------- 62 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE---------------------------------
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE---------------------------------
Confidence 3445789999999998887 567889999997764321100
Q ss_pred cccccCCCceeeccCccceEEEEEcCC-CeEEEEeCCCcEEEeccCCCeeeEe-ec-----CCCCeEEEEEeeCCCCEEE
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNV-FD-----HHNYVTCVQFNPIDDNYFI 325 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~-~~l~s~s~d~~v~iwd~~~~~~~~~-~~-----~~~~v~~~~~~p~~~~~l~ 325 (626)
.....++...+.+++++++ +.|+.++..+.|.+||.. ++.... .. ....+.+++++| ++++++
T Consensus 63 --------~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v 132 (314)
T 1pjx_A 63 --------KPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWI 132 (314)
T ss_dssp --------CCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEE
T ss_pred --------ecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEE
Confidence 0001124567899999999 876666666679999998 766544 32 123588999999 888888
Q ss_pred EEeCC---------------CcEEEEeCCCCeEEEeccCCCCeEEEEEe----eCCCEEEEE-ecCCcEEEEEcC-CCce
Q 006909 326 SGSID---------------GKVRIWGVCEKRVVDWADVRDVISAICYI----PDGKGFIVG-SITGTCHFYKAS-GNDL 384 (626)
Q Consensus 326 s~s~d---------------g~v~iwd~~~~~~~~~~~~~~~i~~i~~s----p~g~~l~~g-~~dg~i~i~d~~-~~~~ 384 (626)
+...+ +.|..||.. ++.............++++ |+++.++++ ..++.|.+|+.. .+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~ 211 (314)
T 1pjx_A 133 TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI 211 (314)
T ss_dssp EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE
T ss_pred EecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc
Confidence 77655 568888876 5555444444567889999 999766665 467899999986 3332
Q ss_pred eeeEEeeccccccCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcCCCCEEE-EE
Q 006909 385 KLEKVDFHDRKKTSG-NKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHII-SI 460 (626)
Q Consensus 385 ~~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~-s~ 460 (626)
........ ...+. ..+..++++++| .++++...++.|.+||..+ ....+.. +...+.+++|+|+|++|+ +.
T Consensus 212 ~~~~~~~~--~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 212 ENKKVWGH--IPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp EEEEEEEE--CCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEE
T ss_pred ccceEEEE--CCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEe
Confidence 11111111 11112 457889999997 6777777889999999762 2333332 446789999999999555 44
Q ss_pred eCCccEEEEECCC
Q 006909 461 GDDCRVYVWNYDE 473 (626)
Q Consensus 461 s~dg~I~iwd~~~ 473 (626)
..++.|..|++..
T Consensus 287 ~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 287 HENNAVWKFEWQR 299 (314)
T ss_dssp TTTTEEEEEECSS
T ss_pred CCCCeEEEEeCCC
Confidence 5568999999875
No 188
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.51 E-value=6.1e-12 Score=123.76 Aligned_cols=200 Identities=10% Similarity=0.153 Sum_probs=142.8
Q ss_pred ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-------CCCCeEEEEEeeCCCCEEEEEeC-CCcEEE
Q 006909 265 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDNYFISGSI-DGKVRI 335 (626)
Q Consensus 265 ~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~~p~~~~~l~s~s~-dg~v~i 335 (626)
.++-..+.++++++++ ++++...++.|.+||.. ++.+..+. +...+.++++.+.+++++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3566789999999988 55666788999999987 55665553 23578899995326666666543 789999
Q ss_pred EeCCCCeEEEec--cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909 336 WGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 413 (626)
Q Consensus 336 wd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (626)
||. +++..... .....+..++++|+|+.+++...++.|.+||..+... ..+... .+...+.+++++++| .
T Consensus 105 ~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~--~~~~~~----~~~~~p~~i~~~~~g-~ 176 (286)
T 1q7f_A 105 YNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL--HKFGCS----KHLEFPNGVVVNDKQ-E 176 (286)
T ss_dssp ECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE--EEEECT----TTCSSEEEEEECSSS-E
T ss_pred ECC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE--EEeCCC----CccCCcEEEEECCCC-C
Confidence 995 44444322 2345689999999998777777789999999754322 122111 123568999999997 6
Q ss_pred EEEEEeCCCcEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc-cEEEEECCC
Q 006909 414 RIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC-RVYVWNYDE 473 (626)
Q Consensus 414 ~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg-~I~iwd~~~ 473 (626)
++++...++.|++||.... ...+....+...+..++++++|+++++...++ .|.+|+...
T Consensus 177 l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g 238 (286)
T 1q7f_A 177 IFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG 238 (286)
T ss_dssp EEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred EEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC
Confidence 7777778999999997532 23333222336789999999999988888776 999999654
No 189
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.50 E-value=1.6e-11 Score=131.86 Aligned_cols=286 Identities=13% Similarity=0.078 Sum_probs=184.8
Q ss_pred CCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC--CCeEEEeccCCCCeE
Q 006909 278 NSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC--EKRVVDWADVRDVIS 354 (626)
Q Consensus 278 ~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~i~ 354 (626)
+.+ .+++...+++|.++|..+++.+..+.....+..+.|+| +++++++++.|+.|.+||+. +.+.+..........
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~ 243 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 243 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc
Confidence 334 56677888999999999999999988777788999999 99999999999999999995 666666555555678
Q ss_pred EEEEe----eCCCEEEEEec-CCcEEEEEcCCCceeeeEEeecccc-c----cCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 006909 355 AICYI----PDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRK-K----TSGNKITGIQFSRDESQRIMITSEDSKL 424 (626)
Q Consensus 355 ~i~~s----p~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~-~----~~~~~i~~l~~s~~~~~~l~~~s~dg~i 424 (626)
.++|+ |+|++++++.. ++++.++|..+.+... .+...+.. . .....+..+..+++++.+++....+|.|
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~-~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK-IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE-EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE-EEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 99999 69999888765 4899999988766543 22221100 0 0123688899999887777777788999
Q ss_pred EEEeCCcce-eeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCCCCCCCCcc-C---Cccceee-eccC-Cc
Q 006909 425 RILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQK-N---SVRSCEH-FFSE-GV 496 (626)
Q Consensus 425 ~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~-~---~~~~~~~-~~~~-g~ 496 (626)
.++|..... ..............+.|+|+|++++++. .++.|.++|+.++........ . ....-.. ++|+ +.
T Consensus 323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~ 402 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGP 402 (567)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred EEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCc
Confidence 999976431 1111122344677889999999987765 578999999998732211111 1 0001112 4565 33
Q ss_pred EEEEecCC-CCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccC--CCC----CCCCCCCccc
Q 006909 497 SVAVQWPG-IGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSAT--WPA----EKLPLWDVTI 569 (626)
Q Consensus 497 ~~av~~s~-~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~--~~d----~~i~vwd~~~ 569 (626)
.+++.-.. +...++.... .......|......+ ..+.....+.++|||+++.... .|| ..|.++|+.+
T Consensus 403 v~~t~~~g~~~Vsvid~~~--~~~~~~~~kvv~~i~---~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 403 VWATSHMGDDSVALIGTDP--EGHPDNAWKILDSFP---ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp EEEEEBSSSSEEEEEECCT--TTCTTTBTSEEEEEE---CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred EEEeCCCCCCeEEEecCCC--CCCccccCEEEEEEe---cCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 33333222 2222232222 111122244433222 1222234567899999776544 232 4788898876
Q ss_pred C
Q 006909 570 D 570 (626)
Q Consensus 570 ~ 570 (626)
.
T Consensus 478 ~ 478 (567)
T 1qks_A 478 M 478 (567)
T ss_dssp C
T ss_pred c
Confidence 5
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.46 E-value=1.3e-11 Score=137.92 Aligned_cols=201 Identities=9% Similarity=0.025 Sum_probs=136.7
Q ss_pred cCccceEEEEEcCCC-eEEEEeCC-C----cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCc-------
Q 006909 266 GHKGDVLDLAWSNSN-YLLSCSMD-K----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK------- 332 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~-~l~s~s~d-~----~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~------- 332 (626)
+|...+..++||||| +|+.++.+ | +|++||+.+++..........+..++|+| +++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEe-CCCEEEEEEECCcccccccc
Confidence 455578899999998 66655443 3 89999999998876433223367899999 9999999888766
Q ss_pred ---------EEEEeCCCCe---EEEec--cCCCCeEEEEEeeCCCEEEEEec-----CCcEEEEEcCC------Cceeee
Q 006909 333 ---------VRIWGVCEKR---VVDWA--DVRDVISAICYIPDGKGFIVGSI-----TGTCHFYKASG------NDLKLE 387 (626)
Q Consensus 333 ---------v~iwd~~~~~---~~~~~--~~~~~i~~i~~sp~g~~l~~g~~-----dg~i~i~d~~~------~~~~~~ 387 (626)
|++|++.+++ ..... .+...+..+.|+|||++|+.++. +..|++||+.+ +.....
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 9999998765 22222 23456789999999999998775 56899999976 322222
Q ss_pred EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEeCCcce----eeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909 388 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISI 460 (626)
Q Consensus 388 ~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d---g~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~g~~l~s~ 460 (626)
.+..+ ...+.. .|+|+|..+++.+..+ +.|.+||+.... ..+..+.....+..++|++++.++++.
T Consensus 281 ~l~~~------~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~ 353 (710)
T 2xdw_A 281 KLIDN------FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (710)
T ss_dssp EEECS------SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred EeeCC------CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence 22221 133333 4888885444444433 369999976542 333332222367789999888888888
Q ss_pred eCCc--cEEEEECCCC
Q 006909 461 GDDC--RVYVWNYDEL 474 (626)
Q Consensus 461 s~dg--~I~iwd~~~~ 474 (626)
..|+ .|++|++.++
T Consensus 354 ~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 354 LHDVKNTLQLHDLATG 369 (710)
T ss_dssp EETTEEEEEEEETTTC
T ss_pred EECCEEEEEEEECCCC
Confidence 8887 4666777444
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.46 E-value=3.9e-12 Score=141.79 Aligned_cols=195 Identities=12% Similarity=0.051 Sum_probs=131.7
Q ss_pred cCccceEEEEEcCCC-eEE-----EEeCCCcEEEeccCCCeee-EeecCCCCeEEEEEeeCCCCEEEEEeCCCc------
Q 006909 266 GHKGDVLDLAWSNSN-YLL-----SCSMDKTVRMWQVGCNQCL-NVFDHHNYVTCVQFNPIDDNYFISGSIDGK------ 332 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~-~l~-----s~s~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~------ 332 (626)
+|...+..++||||| +|+ .|+.+.+|++||+.+++.+ ...-.......++|+| +++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 466679999999998 555 2344568999999998875 2111111126889999 9999999988776
Q ss_pred -------EEEEeCCCCe----EEE-eccCCCCeEEEEEeeCCCEEEEEecCC----cEEEEEcCCCceeeeEEeeccccc
Q 006909 333 -------VRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKK 396 (626)
Q Consensus 333 -------v~iwd~~~~~----~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg----~i~i~d~~~~~~~~~~~~~~~~~~ 396 (626)
|++|++.++. ++. ...+...+..+.|+|||++|+.++.++ .|.+++..+.. ...+...
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~---- 270 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD--FRLLVKG---- 270 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS--CEEEEEC----
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc--eEEeecC----
Confidence 9999998765 222 223446788999999999999887666 56666544332 2222222
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEe---CCCcEEEEeCCcce----eeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909 397 TSGNKITGIQFSRDESQRIMITS---EDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW 469 (626)
Q Consensus 397 ~~~~~i~~l~~s~~~~~~l~~~s---~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iw 469 (626)
...+....+ ++|. +++.+. .++.|.+||+.+.. ..+........+..++|+ ++.++++...|+..+||
T Consensus 271 --~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 271 --VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp --SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred --CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 134555556 6664 555544 25789999986542 333332224567888888 67788888899988888
Q ss_pred ECC
Q 006909 470 NYD 472 (626)
Q Consensus 470 d~~ 472 (626)
.++
T Consensus 346 ~~~ 348 (695)
T 2bkl_A 346 VAT 348 (695)
T ss_dssp EEE
T ss_pred EEe
Confidence 765
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.46 E-value=3.7e-11 Score=120.77 Aligned_cols=193 Identities=9% Similarity=0.068 Sum_probs=139.4
Q ss_pred cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc
Q 006909 269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 348 (626)
Q Consensus 269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 348 (626)
.....+++..+..+++...++.|.+||..+++.+..+........+++++ ++..+++...++.|.+||..++++.....
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 34567777654466666778999999999999998887777899999998 77555554478999999999988775444
Q ss_pred CCC------CeEEEEEeeCCCEEEEEe--cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909 349 VRD------VISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 420 (626)
Q Consensus 349 ~~~------~i~~i~~sp~g~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~ 420 (626)
... ....+++ . +..++++. .++.|.++|+.+.+.... +... .....+.++|+| ++++++..
T Consensus 123 ~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~-i~~g-------~~p~~i~~~~dG-~l~v~~~~ 191 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDE-LTIG-------IQPTSLVMDKYN-KMWTITDG 191 (328)
T ss_dssp CTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEE-EECS-------SCBCCCEECTTS-EEEEEBCC
T ss_pred cCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEE-EEcC-------CCccceEEcCCC-CEEEEECC
Confidence 333 5667777 4 44555555 488999999988765332 2221 345678999997 55555554
Q ss_pred C----------CcEEEEeCCccee--eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCC
Q 006909 421 D----------SKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 476 (626)
Q Consensus 421 d----------g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 476 (626)
+ +.|.++|..+... .+.. .....+..++|+|++++|+++.. .|++||..++..
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~-~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKF-KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTTEEEEEEEC-CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred CccCCccccCCceEEEEECCCCeEEEEEec-CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 4 7899999765432 2322 12347899999999999988765 899999987643
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.44 E-value=2e-11 Score=119.23 Aligned_cols=212 Identities=11% Similarity=-0.040 Sum_probs=152.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCc-cc
Q 006909 192 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHK-GD 270 (626)
Q Consensus 192 dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~ 270 (626)
.+++|++++.|+.|.+||.++++. +..+..+. ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~---------------------------------------------~w~~~~~~~~~ 38 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI---------------------------------------------VWEYPLEKGWE 38 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE---------------------------------------------EEEEECCTTCC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE---------------------------------------------EEEeCCCccCC
Confidence 467999999999999999977432 34444444 46
Q ss_pred eEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCC--CCeEEEEEeeCCCCEEEEEeC-CCcEEEEeCCCCeEEEec
Q 006909 271 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVVDWA 347 (626)
Q Consensus 271 V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~ 347 (626)
+.++.++|+|.++. +.++.|..||. +++.+..+... ..+.++.+.| +++++++.+. ++.|..+|.....+..+.
T Consensus 39 ~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~ 115 (276)
T 3no2_A 39 CNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNMKGEVLSKTE 115 (276)
T ss_dssp CCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECTTSCEEEEEE
T ss_pred CcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeCCCCEEEEEe
Confidence 78899999985444 45788999999 78888888643 5788999999 9999999887 778888887444333322
Q ss_pred ------cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909 348 ------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421 (626)
Q Consensus 348 ------~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d 421 (626)
.+......+++.++|+++++...++.|..||.. ++.... .... ..+.++...++| ..++++..+
T Consensus 116 ~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~-~~~~-------~~~~~~~~~~~g-~~~v~~~~~ 185 (276)
T 3no2_A 116 FETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNS-VKLS-------GTPFSSAFLDNG-DCLVACGDA 185 (276)
T ss_dssp ECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEE-EECS-------SCCCEEEECTTS-CEEEECBTT
T ss_pred ccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEE-EECC-------CCccceeEcCCC-CEEEEeCCC
Confidence 111234556788999999999999999999988 554332 2221 345567788887 688888888
Q ss_pred CcEEEEeCCcceeeeeecCC------CCCeEEEEEcCCCCEEEEEe
Q 006909 422 SKLRILDGVDVIHKFKGLPK------SGSQMSASFTTTGKHIISIG 461 (626)
Q Consensus 422 g~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~g~~l~s~s 461 (626)
+.|..+|..+.....+...+ ...+..+...++|+.+++..
T Consensus 186 ~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 186 HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 89999997744444333111 22367888889998888874
No 194
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=4.3e-10 Score=110.88 Aligned_cols=238 Identities=7% Similarity=-0.011 Sum_probs=167.7
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
.....+.+++++++|++.++...++.|.+|+.. +....
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~----------------------------------------- 54 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE----------------------------------------- 54 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-----------------------------------------
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-----------------------------------------
Confidence 345678999999999988877778899999876 32210
Q ss_pred CCceeeccCccceEEEEEcCCCeEEEE-eCCCcEEEeccCCCeeeEee-c-CCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSNYLLSC-SMDKTVRMWQVGCNQCLNVF-D-HHNYVTCVQFNPIDDNYFISGSIDGKVRI 335 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~-s~d~~v~iwd~~~~~~~~~~-~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~i 335 (626)
..+..+...+.++++.+++.+..+ ..++.|..+|.. ++..... . ....+.++++.+ +++++++...++.|..
T Consensus 55 ---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~ 129 (300)
T 2qc5_A 55 ---FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGK 129 (300)
T ss_dssp ---EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEE
T ss_pred ---EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEE
Confidence 011123356889999988854444 447889999988 5543221 1 346789999998 8888887776889999
Q ss_pred EeCCCCeEEEe--ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909 336 WGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 413 (626)
Q Consensus 336 wd~~~~~~~~~--~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (626)
+|.. ++.... ......+..+++.++|+..++...++.|..|+. ++.... .... .....+.++++.++| .
T Consensus 130 ~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i~~d~~g-~ 200 (300)
T 2qc5_A 130 LTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE--YPLP----TNAAAPVGITSGNDG-A 200 (300)
T ss_dssp ECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEEEECTTS-S
T ss_pred ECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE--eeCC----CCCCCcceEEECCCC-C
Confidence 9987 555433 223467899999999986666656788999998 333221 2111 123568899999987 5
Q ss_pred EEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909 414 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 414 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~ 472 (626)
++++....+.|.+||.......+........+.+++++++|++.++...++.|..|+..
T Consensus 201 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 201 LWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred EEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 66666667889999974333333333345678999999999977777677899999984
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.44 E-value=1.8e-11 Score=119.66 Aligned_cols=217 Identities=13% Similarity=0.099 Sum_probs=152.8
Q ss_pred cCCCeEEEEeCCCcEEEeccCCCeeeEeecCC--CCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccC-CCC
Q 006909 277 SNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADV-RDV 352 (626)
Q Consensus 277 s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~-~~~ 352 (626)
+|++.|++++.++.|.+||.++++.+..+... ..+.++.+.| ++++++ +.++.|..||. +++.+- +... ...
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 46678999999999999999999999998743 3688999999 999888 35788999999 555543 3333 357
Q ss_pred eEEEEEeeCCCEEEEEec-CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909 353 ISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 431 (626)
Q Consensus 353 i~~i~~sp~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~ 431 (626)
+.++.+.|+|+.+++.+. ++.+..+|..+ +.. ..+........+......+.+.++| .++++...++.|..||..
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k~l-~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNMKG-EVL-SKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECTTS-CEE-EEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTT-
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeCCC-CEE-EEEeccCCCCcccccccCceECCCC-CEEEEecCCCEEEEECCC-
Confidence 888999999999999887 77777777643 332 2222221111111345566788987 788999999999999976
Q ss_pred ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC-------CccceeeeccCCcEEEEec
Q 006909 432 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN-------SVRSCEHFFSEGVSVAVQW 502 (626)
Q Consensus 432 ~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~av~~ 502 (626)
.....+... ...+.++.+.++|+.+++++.++.|..+|..++......... .-.......++|.+++..+
T Consensus 155 G~~~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 155 GQLLNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp SCEEEEEEC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEEC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 444443322 245667888999999999998889999999977443322111 1123334556777776665
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.43 E-value=2.6e-10 Score=112.37 Aligned_cols=237 Identities=8% Similarity=0.030 Sum_probs=164.6
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
+...+.+++++++|.++++...++.|..|+... ...
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~------------------------------------------- 90 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKG-IIK------------------------------------------- 90 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE-------------------------------------------
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cEE-------------------------------------------
Confidence 446799999999999888877788899998652 110
Q ss_pred CceeeccCccceEEEEEcCCCeE-EEEeCCCcEEEeccCCCeeeEee--cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 260 PLQELHGHKGDVLDLAWSNSNYL-LSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~~l-~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
...+......+.++++.+++.| ++...++.|.+||. +++..... .....+.++++.+ +++++++...++.|..|
T Consensus 91 -~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~ 167 (299)
T 2z2n_A 91 -EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRI 167 (299)
T ss_dssp -EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred -EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEE
Confidence 0011123456889999998844 44556788999998 55444322 2345789999998 88888877777899999
Q ss_pred eCCCCeEEEe--ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909 337 GVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 414 (626)
Q Consensus 337 d~~~~~~~~~--~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~ 414 (626)
|. +++.... ......+..++++++|+..++...++.|.+||. ++.... .... .....+.+++++++| .+
T Consensus 168 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i~~~~~g-~l 238 (299)
T 2z2n_A 168 TE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE--FKIP----TPNARPHAITAGAGI-DL 238 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEEEECSTT-CE
T ss_pred cC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE--EECC----CCCCCceeEEECCCC-CE
Confidence 99 6665543 233456889999999987666666889999998 444321 2111 123678999999997 56
Q ss_pred EEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 415 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 415 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+++...++.|.+||.......+....+...+.++++ ++|++.++.+ .+.|..++..+.
T Consensus 239 ~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 239 WFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred EEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 666557899999997543344433334567899999 8888777765 567777777653
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.43 E-value=2.2e-11 Score=120.49 Aligned_cols=198 Identities=12% Similarity=0.018 Sum_probs=141.7
Q ss_pred CCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 335 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i 335 (626)
..+..+..+.....+++|+|++ .++++..++.|..||..++ ...+ .+...+.+++++| +++++++...++.|.+
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLER 94 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEE
Confidence 3455666677788999999987 4778888999999999887 4444 4667899999999 9998887777789999
Q ss_pred EeCCCCeEEEeccC-----CCCeEEEEEeeCCCEEEE----Eec-------------CCcEEEEEcCCCceeeeEEeecc
Q 006909 336 WGVCEKRVVDWADV-----RDVISAICYIPDGKGFIV----GSI-------------TGTCHFYKASGNDLKLEKVDFHD 393 (626)
Q Consensus 336 wd~~~~~~~~~~~~-----~~~i~~i~~sp~g~~l~~----g~~-------------dg~i~i~d~~~~~~~~~~~~~~~ 393 (626)
||..+++...+... ...+..++++|+|+.+++ |+. .+.|..++.. +.. .... .
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~--~~~~-~- 169 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL--SAPI-R- 169 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE--EEEE-C-
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE--EEee-c-
Confidence 99987776543221 234678999999998877 331 2345555544 222 1111 1
Q ss_pred ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC-cc-----eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEE
Q 006909 394 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DV-----IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY 467 (626)
Q Consensus 394 ~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~-~~-----~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~ 467 (626)
.......++|+|+| +.+++.+.++.|.+|+.. +. ...+ ..+...+..++++++|+++++. ++.|.
T Consensus 170 ----~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~ 240 (296)
T 3e5z_A 170 ----DRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVH 240 (296)
T ss_dssp ----CCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred ----CCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEE
Confidence 12567899999998 556777788999999975 21 2223 2245567789999999977766 78899
Q ss_pred EEECCC
Q 006909 468 VWNYDE 473 (626)
Q Consensus 468 iwd~~~ 473 (626)
+|+.+.
T Consensus 241 ~~~~~g 246 (296)
T 3e5z_A 241 VLTPDG 246 (296)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 999874
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=1.2e-11 Score=138.83 Aligned_cols=240 Identities=17% Similarity=0.100 Sum_probs=157.7
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGED-----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
+|...+..++|||||++||.++.+ ..|++||+.++...
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~------------------------------------- 202 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL------------------------------------- 202 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE-------------------------------------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------------------
Confidence 455578999999999999987654 35999999875321
Q ss_pred ccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCc--------------EEEeccCCCee--eEeec---CCCCeEEE
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKT--------------VRMWQVGCNQC--LNVFD---HHNYVTCV 314 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~--------------v~iwd~~~~~~--~~~~~---~~~~v~~~ 314 (626)
. ...+...+..++|+|+..|+.++.++. |++|++.+++. ...+. +...+..+
T Consensus 203 --------~-~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 203 --------A-DELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp --------E-EEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred --------C-ccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 1 111112235788998876666666554 89999987653 22332 33468899
Q ss_pred EEeeCCCCEEEEEeCCC-----cEEEEeCCCC--e-EEEeccCCCCeEEEEEeeCCCEEEEEecC----CcEEEEEcCCC
Q 006909 315 QFNPIDDNYFISGSIDG-----KVRIWGVCEK--R-VVDWADVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGN 382 (626)
Q Consensus 315 ~~~p~~~~~l~s~s~dg-----~v~iwd~~~~--~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~d----g~i~i~d~~~~ 382 (626)
.|+| ++++|+..+.++ .|++||+.++ + ...+..+...+... ++|+|+.|+..+.+ +.|.+||+.+.
T Consensus 274 ~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 274 SVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 9999 999888877544 7999999876 5 55555555555555 35899999888764 45999998764
Q ss_pred ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC--c-ceeeeeecCCCCCeEEEEEcCCCCEEEE
Q 006909 383 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--D-VIHKFKGLPKSGSQMSASFTTTGKHIIS 459 (626)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s 459 (626)
......+..+ +...+..+.++. ..++++...|+..+||... . ....+.. ...+.+..++++|+++.|+.
T Consensus 352 ~~~~~~l~~~-----~~~~l~~~~~~~--~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~ 423 (741)
T 1yr2_A 352 TPRFDTVVPE-----SKDNLESVGIAG--NRLFASYIHDAKSQVLAFDLDGKPAGAVSL-PGIGSASGLSGRPGDRHAYL 423 (741)
T ss_dssp SCEEEEEECC-----CSSEEEEEEEEB--TEEEEEEEETTEEEEEEEETTSCEEEECBC-SSSCEEEEEECCBTCSCEEE
T ss_pred ccccEEEecC-----CCCeEEEEEEEC--CEEEEEEEECCEEEEEEEeCCCCceeeccC-CCCeEEEEeecCCCCCEEEE
Confidence 2011111111 124567778873 3688888889887776532 2 2222222 23567888999999886653
Q ss_pred E----eCCccEEEEECCCC
Q 006909 460 I----GDDCRVYVWNYDEL 474 (626)
Q Consensus 460 ~----s~dg~I~iwd~~~~ 474 (626)
. ...++|++||+.++
T Consensus 424 ~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 424 SFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEETTEEEEEEEEETTTT
T ss_pred EEcCCCCCCEEEEEECCCC
Confidence 2 23489999999876
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.39 E-value=7.2e-11 Score=114.79 Aligned_cols=195 Identities=7% Similarity=0.015 Sum_probs=136.8
Q ss_pred ceEEEEEcCCCeEEE-E-eCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe
Q 006909 270 DVLDLAWSNSNYLLS-C-SMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 346 (626)
Q Consensus 270 ~V~~l~~s~~~~l~s-~-s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 346 (626)
...++++++++.|+. + +.++.|.+||..++...... .+...+.++++.+ +++++++.. ++.|.+||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678899999885444 4 67789999998765433221 2335678999999 888666655 88999999887665543
Q ss_pred cc-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 006909 347 AD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 425 (626)
Q Consensus 347 ~~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~ 425 (626)
.. ....+..++++|+|+.+++...++.|.+|+..+...... . . .....+.+++++++| +++++...++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~-~----~~~~~p~~i~~~~~g-~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--P-F----TGLNDPDGVAVDNSG-NVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--C-C----CSCCSCCCEEECTTC-CEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--c-c----ccCCCceeEEEeCCC-CEEEEECCCCEEE
Confidence 32 235789999999998777777788999997554332111 1 1 112467889999997 5777777788999
Q ss_pred EEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 426 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 426 iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+||................+..++++++|.++++...++.|++|+..+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 175 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred EEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 9997654333222223367889999999988888777899999998764
No 200
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.36 E-value=1.8e-11 Score=124.00 Aligned_cols=187 Identities=5% Similarity=0.006 Sum_probs=131.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909 183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 262 (626)
Q Consensus 183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (626)
.++.+++++...++++|+.++ +++|++.+...... .... +.++..
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~--~~~~--------------------------------~~~~~~ 83 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT--SDST--------------------------------PLTFKW 83 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH--SSSC--------------------------------CCCCSE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc--cccc--------------------------------cccceE
Confidence 689999999999999999986 66799875321000 0000 011112
Q ss_pred eeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909 263 ELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 341 (626)
Q Consensus 263 ~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~ 341 (626)
. ..+.. |+.++| .+..|+++ .++.|++||+.+....... .+...+.++.+.+ . .+++++.||.|.+||+.++
T Consensus 84 ~-~~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 84 E-KEIPD-VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTK 156 (388)
T ss_dssp E-EECTT-EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTC
T ss_pred E-eeCCC-eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCC
Confidence 2 23566 999999 43477777 8899999999765544333 4667788887765 2 3888899999999999987
Q ss_pred eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee-eeEEeecccc---ccCCCCeEEEEEcCCCCcEEEE
Q 006909 342 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRK---KTSGNKITGIQFSRDESQRIMI 417 (626)
Q Consensus 342 ~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~~~~~---~~~~~~i~~l~~s~~~~~~l~~ 417 (626)
.... +...|+|++|+|+| +++|..||++++|+..+.... ...+...... ..+...|.++.|.+++ .++++
T Consensus 157 ~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~ 230 (388)
T 1xip_A 157 STKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV 230 (388)
T ss_dssp CEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred cccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence 7654 45689999999999 788999999999998877642 2222111111 1245889999999986 55554
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.35 E-value=1.8e-09 Score=110.06 Aligned_cols=245 Identities=7% Similarity=-0.028 Sum_probs=155.7
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 186 TLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 186 ~l~fspdg~~Latgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
.++|||||++|+.+. .++.|.+||..+.+........
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~--------------------------------- 116 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP--------------------------------- 116 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC---------------------------------
Confidence 899999999988875 3678999999764332110000
Q ss_pred ccCCCceeeccCccceEEEEEcCCC-eEEEEeC--CCcEEEeccCCCeeeEe-ecCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~--d~~v~iwd~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
...... +......++|+|+| +|+.+.. ++.|.++| .+++.+.. +..... +.+.|.....+++.+.||
T Consensus 117 ---~~~~~~--~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg 187 (373)
T 2mad_H 117 ---DAPRFD--VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQG 187 (373)
T ss_pred ---Cccccc--cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCC
Confidence 000000 01234578999998 6666653 57899999 99998888 654433 455563456677788899
Q ss_pred cEEEEeCCCCeEEEecc------CCCC-eEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee-eEEeeccc----cccCC
Q 006909 332 KVRIWGVCEKRVVDWAD------VRDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHDR----KKTSG 399 (626)
Q Consensus 332 ~v~iwd~~~~~~~~~~~------~~~~-i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~-~~~~~~~~----~~~~~ 399 (626)
.+.++|. +++...... ...+ .....+.+++..++..+..+.+.+.|+.+..... ..+..... .....
T Consensus 188 ~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p 266 (373)
T 2mad_H 188 GLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRP 266 (373)
T ss_pred CEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceec
Confidence 9999999 776653211 1111 2335567777666666678899999997654322 12221110 00011
Q ss_pred CCeEEEEEcCCCCcEEEEEeC----------CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC-EEEEEe-CCccEE
Q 006909 400 NKITGIQFSRDESQRIMITSE----------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVY 467 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s-~dg~I~ 467 (626)
.....+.++|++. +++++.. .+.|.++|..+....-... -......++|+|||+ +++++. .++.|.
T Consensus 267 ~g~~~~~~s~d~~-~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ 344 (373)
T 2mad_H 267 GGWQQVAYLKSSD-GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLH 344 (373)
T ss_pred CceEeEEECCCCC-EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEE
Confidence 2344578999984 5555432 4689999987544332221 334688999999999 777777 489999
Q ss_pred EEECCCCC
Q 006909 468 VWNYDELC 475 (626)
Q Consensus 468 iwd~~~~~ 475 (626)
++|..++.
T Consensus 345 ViD~~t~~ 352 (373)
T 2mad_H 345 IYDAGAGD 352 (373)
T ss_pred EEECCCCC
Confidence 99999863
No 202
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.35 E-value=4.5e-10 Score=116.28 Aligned_cols=239 Identities=11% Similarity=0.076 Sum_probs=160.8
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
.....|+|+|+|+++++...++.|++||..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~--------------------------------------------- 165 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT--------------------------------------------- 165 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---------------------------------------------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---------------------------------------------
Confidence 35889999999998888777899999998763221
Q ss_pred eeeccCccceEEEEEcCCC-eEEEEeCCC--cEEEeccCCCeeeEee----c-CCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909 262 QELHGHKGDVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVF----D-HHNYVTCVQFNPIDDNYFISGSIDGKV 333 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~--~v~iwd~~~~~~~~~~----~-~~~~v~~~~~~p~~~~~l~s~s~dg~v 333 (626)
.+........ ++|++++ .|+++..++ .|.+++...+.....+ . ....+.+++++| ++..|+.+..++.|
T Consensus 166 -~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I 242 (409)
T 3hrp_A 166 -TVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNF 242 (409)
T ss_dssp -EEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEE
T ss_pred -EeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcE
Confidence 1111122233 8899987 777777765 7888888766554444 2 456778999999 55666667778899
Q ss_pred EEEeCCCCeEEEe----c-cCCCCe--EEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeecccc---------c
Q 006909 334 RIWGVCEKRVVDW----A-DVRDVI--SAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK---------K 396 (626)
Q Consensus 334 ~iwd~~~~~~~~~----~-~~~~~i--~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~---------~ 396 (626)
+.||..++..... . ...... ..++|+|+ +..+++-..++.|+.|+...... .+.-.... .
T Consensus 243 ~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~---~~~g~~~~~g~~dg~~~~ 319 (409)
T 3hrp_A 243 GRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE---WFCGSATQKTVQDGLREE 319 (409)
T ss_dssp EEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE---EEEECTTCCSCBCEEGGG
T ss_pred EEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE---EEEeCCCCCCcCCCcccc
Confidence 9999987765433 1 111112 38999995 55555556678899998765421 11111000 0
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEeCCc-ceeeeeecC-------------CCCCeEEEEEcCCCCEEEEEe
Q 006909 397 TSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVD-VIHKFKGLP-------------KSGSQMSASFTTTGKHIISIG 461 (626)
Q Consensus 397 ~~~~~i~~l~~s~~~~~~l~~~s-~dg~i~iwd~~~-~~~~~~~~~-------------~~~~v~~~~~sp~g~~l~s~s 461 (626)
..-.....++++|+| .++++-. .++.|+.|+..+ .+..+.+.. .-.....++++++|.++++-.
T Consensus 320 ~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~ 398 (409)
T 3hrp_A 320 ALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA 398 (409)
T ss_dssp CBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES
T ss_pred cEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC
Confidence 012457899999998 5777777 789999999543 333343321 024588999999988888888
Q ss_pred CCccEEEEECC
Q 006909 462 DDCRVYVWNYD 472 (626)
Q Consensus 462 ~dg~I~iwd~~ 472 (626)
.++.|+.++++
T Consensus 399 ~n~~Ir~i~~e 409 (409)
T 3hrp_A 399 WGKAIRKYAVE 409 (409)
T ss_dssp TTCEEEEEEEC
T ss_pred CCCeEEEEEeC
Confidence 88899888753
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.33 E-value=1.1e-09 Score=108.33 Aligned_cols=229 Identities=12% Similarity=0.088 Sum_probs=151.0
Q ss_pred cccCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 179 AHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 179 ~H~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
.+..---+..|+|++ .++++...++.|..||..++..
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------------------------------ 47 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV------------------------------------------ 47 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE------------------------------------------
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE------------------------------------------
Confidence 344456688899965 4666666788999999876321
Q ss_pred CCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecC-----CCCeEEEEEeeCCCCEEEEEeCC--
Q 006909 258 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-----HNYVTCVQFNPIDDNYFISGSID-- 330 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~s~s~d-- 330 (626)
..+ .+...+.++++++++.|+.+. +..|.+||..+++....... ...++.++++| +++++++....
T Consensus 48 ----~~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~ 120 (297)
T 3g4e_A 48 ----QRV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEET 120 (297)
T ss_dssp ----EEE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCS
T ss_pred ----EEE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCccc
Confidence 111 234578999999998666665 56799999988776443321 23578999999 88877654321
Q ss_pred ---------CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEE-EecCCcEEEEEcC--CCceeeeEEeeccccccC
Q 006909 331 ---------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYKAS--GNDLKLEKVDFHDRKKTS 398 (626)
Q Consensus 331 ---------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~-g~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~ 398 (626)
+.|..++.. ++...........+.++|+|+++.|++ .+.++.|.+|++. ++.......... ....
T Consensus 121 ~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~--~~~~ 197 (297)
T 3g4e_A 121 APAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK--LEKE 197 (297)
T ss_dssp BTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE--CCGG
T ss_pred ccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE--CCCC
Confidence 344445543 344444444456789999999997755 4557899999974 443221111111 1111
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEc-CCCCEEEEEeC
Q 006909 399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFT-TTGKHIISIGD 462 (626)
Q Consensus 399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s-p~g~~l~s~s~ 462 (626)
...+..+++.++| +++++...++.|.+||..+. ...+.. ....+++++|. |+++.|+.++.
T Consensus 198 ~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 198 EQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp GCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence 2567899999998 67777778889999997633 333433 44678999998 88887766553
No 204
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.31 E-value=6.5e-10 Score=110.41 Aligned_cols=234 Identities=12% Similarity=0.096 Sum_probs=157.0
Q ss_pred ccccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 176 EIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 176 ~l~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
.+..+........|+|+|+ +++++..++.|..|+... .
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~---------------------------------------- 77 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T---------------------------------------- 77 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C----------------------------------------
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C----------------------------------------
Confidence 3445556678899999999 667777789999998732 1
Q ss_pred cccCCCceeeccCccceEEEEEcCCCeEEEEeC-CCcEEEeccCCCeeeEeec-----CCCCeEEEEEeeCCCCEEEE--
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNSNYLLSCSM-DKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFIS-- 326 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~-d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s-- 326 (626)
...+..+...+..++++++|.|+++.. ++.|.+|+.. ++...... ....+..+++.| +++++++
T Consensus 78 ------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~ 149 (305)
T 3dr2_A 78 ------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDP 149 (305)
T ss_dssp ------EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECC
T ss_pred ------EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCc
Confidence 223334556789999999986666654 4789999986 55433222 123567899999 9998886
Q ss_pred --EeC-------------CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC------CcEEEEEcCCCcee
Q 006909 327 --GSI-------------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT------GTCHFYKASGNDLK 385 (626)
Q Consensus 327 --~s~-------------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d------g~i~i~d~~~~~~~ 385 (626)
|.. .+.|..+|..+++..... .......++|+|+++.|+++... +.|.+|++......
T Consensus 150 ~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~ 228 (305)
T 3dr2_A 150 PFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALH 228 (305)
T ss_dssp SGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEE
T ss_pred CCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCcc
Confidence 332 256888888777665544 44567889999999988887765 78999998765421
Q ss_pred eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909 386 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 464 (626)
Q Consensus 386 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg 464 (626)
........ ....+.++++.++| + |.++..+ .|.+|+... ....+.. . ..+..++|+|+++.|+.++.++
T Consensus 229 ~~~~~~~~----~~~~pdgi~~d~~G-~-lwv~~~~-gv~~~~~~g~~~~~~~~--~-~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 229 DRRHFASV----PDGLPDGFCVDRGG-W-LWSSSGT-GVCVFDSDGQLLGHIPT--P-GTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EEEEEECC----SSSCCCSEEECTTS-C-EEECCSS-EEEEECTTSCEEEEEEC--S-SCCCEEEECTTSCEEEEEETTE
T ss_pred CCeEEEEC----CCCCCCeEEECCCC-C-EEEecCC-cEEEECCCCCEEEEEEC--C-CceeEEEEeCCCCEEEEEcCCe
Confidence 11111111 12445678999998 4 4444444 599999753 2333332 2 2588999999999888887654
Q ss_pred cEEEEE
Q 006909 465 RVYVWN 470 (626)
Q Consensus 465 ~I~iwd 470 (626)
++.++
T Consensus 299 -l~~~~ 303 (305)
T 3dr2_A 299 -LWMLP 303 (305)
T ss_dssp -EEEEE
T ss_pred -EEEEE
Confidence 44444
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.31 E-value=2.8e-09 Score=105.01 Aligned_cols=235 Identities=7% Similarity=0.078 Sum_probs=160.7
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
+...+.+++++++|+++++...++.|..||.. +....
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~------------------------------------------ 96 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE------------------------------------------ 96 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE------------------------------------------
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE------------------------------------------
Confidence 34678999999999988877667889998876 32110
Q ss_pred CceeeccCccceEEEEEcCCCeE-EEEeCCCcEEEeccCCCeeeEe-ec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 260 PLQELHGHKGDVLDLAWSNSNYL-LSCSMDKTVRMWQVGCNQCLNV-FD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~~l-~s~s~d~~v~iwd~~~~~~~~~-~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
..+......+.++++.+++.+ ++...++.|..+|.. ++.... +. ....+.++++.+ +++++++...++.|..+
T Consensus 97 --~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 97 --YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRI 172 (300)
T ss_dssp --EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEE
T ss_pred --ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEE
Confidence 011112356889999988844 444447889999987 555432 22 345789999998 88877776667889999
Q ss_pred eCCCCeEEEec--cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909 337 GVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 414 (626)
Q Consensus 337 d~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~ 414 (626)
|. +++..... .....+..++++++|+..++....+.|.+|+.. +.... .... .....+.++++.++| .+
T Consensus 173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~--~~~~----~~~~~~~~i~~d~~g-~l 243 (300)
T 2qc5_A 173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GEISE--YDIP----TPNARPHAITAGKNS-EI 243 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEE--EECS----STTCCEEEEEECSTT-CE
T ss_pred CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-CcEEE--EECC----CCCCCceEEEECCCC-CE
Confidence 98 55544432 234568899999999766666667789999983 33221 1111 123578999999997 56
Q ss_pred EEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909 415 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 415 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~ 472 (626)
+++...++.|..||.......+........+.+++++++|++.++.. . .|..++.+
T Consensus 244 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 244 WFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred EEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 66666679999999754444443333446688999999998766655 4 77777653
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.30 E-value=3.5e-10 Score=126.91 Aligned_cols=194 Identities=12% Similarity=0.068 Sum_probs=126.2
Q ss_pred CccceEEEEEcCCC-eEEEEeCC-----CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCc--------
Q 006909 267 HKGDVLDLAWSNSN-YLLSCSMD-----KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-------- 332 (626)
Q Consensus 267 h~~~V~~l~~s~~~-~l~s~s~d-----~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~-------- 332 (626)
|...+..++||||| +|+.++.+ .+|++||+.+++.+....+...+..++|+| + +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEEST-T-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEEC-C-CEEEEEEecCccccccccc
Confidence 44578899999998 66655443 469999999998765432222235789999 8 88888876654
Q ss_pred ------EEEEeCCCCe---EEEec--cCCCCeEEEEEeeCCCEEEEEecCC-----cEEEEEcCCCcee-eeEEeecccc
Q 006909 333 ------VRIWGVCEKR---VVDWA--DVRDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLK-LEKVDFHDRK 395 (626)
Q Consensus 333 ------v~iwd~~~~~---~~~~~--~~~~~i~~i~~sp~g~~l~~g~~dg-----~i~i~d~~~~~~~-~~~~~~~~~~ 395 (626)
|++|++.++. ..... .+...+..+.|+|||++|+..+.++ .|++||+.++... ...+....
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-- 316 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL-- 316 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS--
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC--
Confidence 8899987654 22222 2233588999999999999887654 8999999876322 22222111
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEeCCcc---eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEE
Q 006909 396 KTSGNKITGIQFSRDESQRIMITSE----DSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV 468 (626)
Q Consensus 396 ~~~~~~i~~l~~s~~~~~~l~~~s~----dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~i 468 (626)
..+.... +|+| ..|+..+. ++.|.+||+... ...+. ..+...+..++|+ ++.++++...|+..+|
T Consensus 317 ----~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 317 ----KAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV-PESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp ----SSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEE-CCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred ----CceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEe-cCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 2334443 4787 45555554 346999997653 12222 2234456677887 5677888888887777
Q ss_pred EECC
Q 006909 469 WNYD 472 (626)
Q Consensus 469 wd~~ 472 (626)
|.++
T Consensus 389 ~~~~ 392 (741)
T 1yr2_A 389 LAFD 392 (741)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7654
No 207
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.28 E-value=2.9e-10 Score=126.48 Aligned_cols=239 Identities=14% Similarity=0.119 Sum_probs=153.0
Q ss_pred cccCcEEEEEEcCCCCEEEEE-----eCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 179 AHKGCIWTLKFSPDGRYLASG-----GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latg-----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
+|...+..++|||||++||-+ +.+..|++||+.+++...
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~------------------------------------ 169 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE------------------------------------ 169 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE------------------------------------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc------------------------------------
Confidence 567789999999999988843 333579999998853210
Q ss_pred ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCC-------------cEEEeccCCCee--eEeec----CCCCeEE
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK-------------TVRMWQVGCNQC--LNVFD----HHNYVTC 313 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~-------------~v~iwd~~~~~~--~~~~~----~~~~v~~ 313 (626)
..+. ......++|+ |+ .|+.++.+. .|++|++.+++. ...+. +...+..
T Consensus 170 --------~~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~ 238 (693)
T 3iuj_A 170 --------TPLK--DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVG 238 (693)
T ss_dssp --------EEEE--EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEE
T ss_pred --------cccC--CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEE
Confidence 0111 1113467899 87 677777664 399999987653 23332 3446788
Q ss_pred EEEeeCCCCEEEEEeC----CCcEEEEeCCCC--eEEEeccCCCCeEEEEEeeCCCEEEEEec----CCcEEEEEcCCCc
Q 006909 314 VQFNPIDDNYFISGSI----DGKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGND 383 (626)
Q Consensus 314 ~~~~p~~~~~l~s~s~----dg~v~iwd~~~~--~~~~~~~~~~~i~~i~~sp~g~~l~~g~~----dg~i~i~d~~~~~ 383 (626)
+.|+| ++++|+.... .+.|+++|+.++ ....+..+....... ++++|..|+..+. .+.|..+++.+..
T Consensus 239 ~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~ 316 (693)
T 3iuj_A 239 ATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG 316 (693)
T ss_dssp EEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred EEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 99999 9988765432 248999999775 555566666655555 6777777665543 2578899988764
Q ss_pred ee-eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909 384 LK-LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI 460 (626)
Q Consensus 384 ~~-~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~ 460 (626)
.. ...+..+. ..+. .|++++..++++...++ .|++||..............+.+..+.++++++.|+..
T Consensus 317 ~~~~~~l~~~~------~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 317 PAHWRDLIPER------QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFG 388 (693)
T ss_dssp GGGCEEEECCC------SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred ccccEEEecCC------CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEE
Confidence 31 11222221 2333 78888744444444554 68889876432222222244567777888888776655
Q ss_pred eCC----ccEEEEECCCC
Q 006909 461 GDD----CRVYVWNYDEL 474 (626)
Q Consensus 461 s~d----g~I~iwd~~~~ 474 (626)
..+ ++|+.||+.++
T Consensus 389 ~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 389 FENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EECSSSCCEEEEECTTTC
T ss_pred ecCCCCCCEEEEEECCCC
Confidence 444 78999999776
No 208
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.28 E-value=7.6e-10 Score=111.62 Aligned_cols=255 Identities=10% Similarity=0.019 Sum_probs=160.6
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 187 LKFSPDGRYLASGGE-----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 187 l~fspdg~~Latgs~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
....|+++.++.... ++.|.+.|..+.+ .+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~---------------------------------------------v~ 72 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR---------------------------------------------VI 72 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE---------------------------------------------EE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCe---------------------------------------------EE
Confidence 445789997777765 6789999998743 23
Q ss_pred eeeccCccceEEEEEcCCC-eEEEEe----------CCCcEEEeccCCCeeeEeecCC--------CCeEEEEEeeCCCC
Q 006909 262 QELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDN 322 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~-~l~s~s----------~d~~v~iwd~~~~~~~~~~~~~--------~~v~~~~~~p~~~~ 322 (626)
..+..-..+ . ++++|++ +++.+. .++.|.+||..+++.+..+... .....++|+| +++
T Consensus 73 ~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk 149 (386)
T 3sjl_D 73 GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGK 149 (386)
T ss_dssp EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSS
T ss_pred EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCC
Confidence 344333334 3 9999998 555543 3678999999999998877422 2566799999 999
Q ss_pred EEEEEeC--CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC-CceeeeEEeeccccccCC
Q 006909 323 YFISGSI--DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-NDLKLEKVDFHDRKKTSG 399 (626)
Q Consensus 323 ~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~ 399 (626)
+++++.. ++.|.++|+.+++++......+. ...+....+.+++.+.||.+.+.++.. +... .... .......
T Consensus 150 ~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~~--~~~~~~~ 224 (386)
T 3sjl_D 150 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE-ITHT--EVFHPED 224 (386)
T ss_dssp EEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCE-EEEC--CCCSCTT
T ss_pred EEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEE-Eeec--ceecccc
Confidence 9888764 68999999999998876654432 223333456777888899999999876 4432 1111 1111111
Q ss_pred CCeE-EEEEc-CCCCcEEEEEeCCCcEEEEeCCcce----eeeeecC--------CCCCeEEEEEcCCCCEEEEEeC---
Q 006909 400 NKIT-GIQFS-RDESQRIMITSEDSKLRILDGVDVI----HKFKGLP--------KSGSQMSASFTTTGKHIISIGD--- 462 (626)
Q Consensus 400 ~~i~-~l~~s-~~~~~~l~~~s~dg~i~iwd~~~~~----~~~~~~~--------~~~~v~~~~~sp~g~~l~s~s~--- 462 (626)
.++. ...|. ++| .++..+.+|.|.+.|..... ..+.... .......++++++++.++....
T Consensus 225 ~~~~~~~~~~~~dG--~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~ 302 (386)
T 3sjl_D 225 EFLINHPAYSQKAG--RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD 302 (386)
T ss_dssp SCBCSCCEEETTTT--EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC
T ss_pred ccccccceeEcCCC--cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccc
Confidence 2222 24564 565 34446668999999975321 2221000 1123335777999998888643
Q ss_pred -------CccEEEEECCCCCCCCCCccCCccceeeeccCCc
Q 006909 463 -------DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV 496 (626)
Q Consensus 463 -------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~ 496 (626)
.+.|.+.|+.+...............+.+++++.
T Consensus 303 ~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~ 343 (386)
T 3sjl_D 303 EWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEK 343 (386)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSS
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCC
Confidence 2579999998874433332222233345555554
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.27 E-value=2.9e-09 Score=106.75 Aligned_cols=224 Identities=11% Similarity=0.009 Sum_probs=147.0
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 183 CIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 183 ~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
......|+|++. ++++...++.|..||..++..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~---------------------------------------------- 83 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK---------------------------------------------- 83 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----------------------------------------------
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE----------------------------------------------
Confidence 356788999755 666666788999999876321
Q ss_pred eeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecC-----CCCeEEEEEeeCCCCEEEEEeC------C
Q 006909 262 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-----HNYVTCVQFNPIDDNYFISGSI------D 330 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~s~s~------d 330 (626)
..+ .+...+.+++|++++.++.++.++ |.+||..+++....... ...+..++++| +++++++... .
T Consensus 84 ~~~-~~~~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~ 160 (326)
T 2ghs_A 84 TVH-ALPFMGSALAKISDSKQLIASDDG-LFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGA 160 (326)
T ss_dssp EEE-ECSSCEEEEEEEETTEEEEEETTE-EEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTC
T ss_pred EEE-ECCCcceEEEEeCCCeEEEEECCC-EEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCc
Confidence 111 123578999999999666666554 99999988876443321 23588999999 8887765542 2
Q ss_pred CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEE-ecCCcEEEEEcC--CC-ceeeeEEeeccccccCCCCeEEEE
Q 006909 331 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKAS--GN-DLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
+.|..++ +++.............++|+|+|+.++++ +.++.|.+|++. ++ .......... .......+.+++
T Consensus 161 ~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~--~~~~~~~p~gi~ 236 (326)
T 2ghs_A 161 GSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID--STGIKGGMDGSV 236 (326)
T ss_dssp EEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE--CTTSSSEEEEEE
T ss_pred eEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEE--CCCCCCCCCeeE
Confidence 4566666 55555444444567889999999877665 456899999986 43 3211111100 011124567899
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCc-ceeeeeecCCCCCeEEEEEc-CCCCEEEEEeC
Q 006909 407 FSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFT-TTGKHIISIGD 462 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s-p~g~~l~s~s~ 462 (626)
+.++| .++++...++.|.+||... ....+.. ....+.+++|+ ++++.|+.++.
T Consensus 237 ~d~~G-~lwva~~~~~~v~~~d~~g~~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 237 CDAEG-HIWNARWGEGAVDRYDTDGNHIARYEV--PGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ECTTS-CEEEEEETTTEEEEECTTCCEEEEEEC--SCSBEEEEEEESTTSCEEEEEEB
T ss_pred ECCCC-CEEEEEeCCCEEEEECCCCCEEEEEEC--CCCCcEEEEEecCCCCEEEEEec
Confidence 99998 5666666778999999742 2233332 34568999998 88887765543
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.27 E-value=3.1e-09 Score=105.57 Aligned_cols=200 Identities=10% Similarity=0.054 Sum_probs=133.8
Q ss_pred eeccCccceEEEEEcCCCeEE-E-------EeCCCcEEEeccCCCeeeEeec-----CCCCeEEEEEeeCC-CCEEEEEe
Q 006909 263 ELHGHKGDVLDLAWSNSNYLL-S-------CSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPID-DNYFISGS 328 (626)
Q Consensus 263 ~~~~h~~~V~~l~~s~~~~l~-s-------~s~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p~~-~~~l~s~s 328 (626)
.+...-....+++|++++.++ + +..++.|.+||..+++...... +...+.++++++ + ++++++ +
T Consensus 12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~-~ 89 (314)
T 1pjx_A 12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVA-D 89 (314)
T ss_dssp EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEE-E
T ss_pred hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEE-E
Confidence 334444567899999888444 4 4678899999988877654332 446789999998 7 555554 4
Q ss_pred CCCcEEEEeCCCCeEEEe-ccC-----CCCeEEEEEeeCCCEEEEEecC---------------CcEEEEEcCCCceeee
Q 006909 329 IDGKVRIWGVCEKRVVDW-ADV-----RDVISAICYIPDGKGFIVGSIT---------------GTCHFYKASGNDLKLE 387 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~~-~~~-----~~~i~~i~~sp~g~~l~~g~~d---------------g~i~i~d~~~~~~~~~ 387 (626)
..+.|.+||.. ++.... ... ...+.+++++++|+.+++...+ +.|..|+.. +...
T Consensus 90 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-- 165 (314)
T 1pjx_A 90 MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-- 165 (314)
T ss_dssp TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE--
T ss_pred CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE--
Confidence 44579999998 766554 321 2347899999999877776554 466666654 3221
Q ss_pred EEeeccccccCCCCeEEEEEc----CCCCcEEEEEeCCCcEEEEeCC-cce----eeeee-cCCC-CCeEEEEEcCCCCE
Q 006909 388 KVDFHDRKKTSGNKITGIQFS----RDESQRIMITSEDSKLRILDGV-DVI----HKFKG-LPKS-GSQMSASFTTTGKH 456 (626)
Q Consensus 388 ~~~~~~~~~~~~~~i~~l~~s----~~~~~~l~~~s~dg~i~iwd~~-~~~----~~~~~-~~~~-~~v~~~~~sp~g~~ 456 (626)
..... ......++++ |++..++++...++.|.+||.. ... ..+.. ..+. ..+..++++++|++
T Consensus 166 ~~~~~------~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 239 (314)
T 1pjx_A 166 QVDTA------FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL 239 (314)
T ss_dssp EEEEE------ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred EeccC------CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE
Confidence 11111 1356889999 9973344455678999999854 211 12222 1122 56788999999999
Q ss_pred EEEEeCCccEEEEECCCC
Q 006909 457 IISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 457 l~s~s~dg~I~iwd~~~~ 474 (626)
+++...++.|.+||..++
T Consensus 240 ~v~~~~~~~i~~~d~~~g 257 (314)
T 1pjx_A 240 LVANWGSSHIEVFGPDGG 257 (314)
T ss_dssp EEEEETTTEEEEECTTCB
T ss_pred EEEEcCCCEEEEEcCCCC
Confidence 888888899999998754
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.24 E-value=2.7e-09 Score=105.48 Aligned_cols=196 Identities=15% Similarity=0.048 Sum_probs=133.0
Q ss_pred ccceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 006909 268 KGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 345 (626)
Q Consensus 268 ~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~ 345 (626)
..-.-+..|+++ + .+++...++.|..||..++.. ..+.....+.+++++| +++++++ . ++.|.+||..+++...
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVV 87 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEE
Confidence 344567889985 4 556666788999999987765 4556677899999999 8885554 3 5689999998887654
Q ss_pred eccC-----CCCeEEEEEeeCCCEEEEEecC---------CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 346 WADV-----RDVISAICYIPDGKGFIVGSIT---------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 346 ~~~~-----~~~i~~i~~sp~g~~l~~g~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
+... ...++.++++|+|+++++.... ..-.+|.+........ .. .. ......++|+|++
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~-~~-----~~~pngi~~spdg 160 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YF-DQ-----VDISNGLDWSLDH 160 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EE-EE-----ESBEEEEEECTTS
T ss_pred EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Ee-ec-----cccccceEEcCCC
Confidence 4322 2347889999999866554322 2345555543221111 11 11 1456789999998
Q ss_pred CcEEEEEeCCCcEEEEeCC--cce----eeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 412 SQRIMITSEDSKLRILDGV--DVI----HKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 412 ~~~l~~~s~dg~i~iwd~~--~~~----~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
..++++.+.++.|.+|+.. +.. ..+.. ......+..++++++|++.++....+.|.+||..++
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence 5455666778999999853 221 12221 112356789999999998888888889999999865
No 212
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.23 E-value=1e-09 Score=110.72 Aligned_cols=257 Identities=13% Similarity=0.087 Sum_probs=156.4
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCC
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKS 242 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (626)
...++..-..+ . +++||||++|+.+. .++.|.+||..+.+.......+.+
T Consensus 71 v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g------------------ 130 (386)
T 3sjl_D 71 VIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA------------------ 130 (386)
T ss_dssp EEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC------------------
T ss_pred EEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc------------------
Confidence 33444444444 4 99999999887765 367899999988543211000000
Q ss_pred CCceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeC--CCcEEEeccCCCeeeEeecCCCCeEEEEEeeC
Q 006909 243 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI 319 (626)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~--d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~ 319 (626)
. + .........++|+|+| +++.+.. ++.|.++|+.+++.+.++..... ..+.|.
T Consensus 131 ----------------~--r--~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~ 187 (386)
T 3sjl_D 131 ----------------P--R--FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPT 187 (386)
T ss_dssp ----------------C--C--CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEE
T ss_pred ----------------c--c--cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecC
Confidence 0 0 0001234568999998 6666653 68999999999999998865442 233453
Q ss_pred CCCEEEEEeCCCcEEEEeCCC-CeEEEec-cC----CCCe-EEEEEe-eCCCEEEEEecCCcEEEEEcCCCceeee-EEe
Q 006909 320 DDNYFISGSIDGKVRIWGVCE-KRVVDWA-DV----RDVI-SAICYI-PDGKGFIVGSITGTCHFYKASGNDLKLE-KVD 390 (626)
Q Consensus 320 ~~~~l~s~s~dg~v~iwd~~~-~~~~~~~-~~----~~~i-~~i~~s-p~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~ 390 (626)
..+.+++.+.||++.+.++.. +++.... .. ...+ ....|. ++|++++ .+.+|.+++.|+.+...... .+.
T Consensus 188 g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~ 266 (386)
T 3sjl_D 188 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVE 266 (386)
T ss_dssp ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEE
T ss_pred CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeeccee
Confidence 667788888999999999876 5542211 11 1122 124554 5775544 56689999999977653222 222
Q ss_pred eccc----cccCCCCeEEEEEcCCCCcEEEEEeC----------CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC-
Q 006909 391 FHDR----KKTSGNKITGIQFSRDESQRIMITSE----------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK- 455 (626)
Q Consensus 391 ~~~~----~~~~~~~i~~l~~s~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~- 455 (626)
.... ..-.......+++++++. ++++... .+.|.++|+.+....-... -...+.++.+++|++
T Consensus 267 ~~~~~~~~~g~~p~g~q~~a~~~~~~-~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~-vg~~~~~lavs~D~~~ 344 (386)
T 3sjl_D 267 ALTEAERADGWRPGGWQQVAYHRALD-RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKP 344 (386)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTTT-EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECSSSSC
T ss_pred ccccccccccccCCCcceeeECCCCC-eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-CCCCcceEEECCCCCe
Confidence 1000 000113344577789874 5554432 3579999987543322221 123678999999997
Q ss_pred EEEEE-eCCccEEEEECCCCC
Q 006909 456 HIISI-GDDCRVYVWNYDELC 475 (626)
Q Consensus 456 ~l~s~-s~dg~I~iwd~~~~~ 475 (626)
+|+++ ..++.|.++|..++.
T Consensus 345 ~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 345 LLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEcCCCCeEEEEECCCCc
Confidence 66665 458999999998863
No 213
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.23 E-value=1.5e-08 Score=103.32 Aligned_cols=215 Identities=9% Similarity=-0.055 Sum_probs=133.6
Q ss_pred EEEEcCCC-eEEEEe----------CCCcEEEeccCCCeeeEeecCC--------CCeEEEEEeeCCCCEEEEEeC--CC
Q 006909 273 DLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDNYFISGSI--DG 331 (626)
Q Consensus 273 ~l~~s~~~-~l~s~s----------~d~~v~iwd~~~~~~~~~~~~~--------~~v~~~~~~p~~~~~l~s~s~--dg 331 (626)
.++++|++ .++.+. .++.|.+||..+.+.+..+... .....++|+| ++++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 89999998 555554 3678999999988887766432 3456899999 9999998874 47
Q ss_pred cEEEEeCCCCeEEEe-ccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC-eEEEEEc
Q 006909 332 KVRIWGVCEKRVVDW-ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK-ITGIQFS 408 (626)
Q Consensus 332 ~v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~s 408 (626)
.|.++| .+++++.. ...... +.+.|++ +.+++.+.||.+.++|. +++.... ....... ....+ .....+.
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~-~~~~~~~-~~~~p~~~~~~~~ 221 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA-GLVGAML-TAAQNLLTQPAQA 221 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE-Eeccccc-cCCcceeecceeE
Confidence 899999 99888766 555443 4455665 45666778999999999 6554321 1100000 01122 2335567
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCcce----eeeeecC--------CCCCeEEEEEcCCCCEEEEEeC----------CccE
Q 006909 409 RDESQRIMITSEDSKLRILDGVDVI----HKFKGLP--------KSGSQMSASFTTTGKHIISIGD----------DCRV 466 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~~~~----~~~~~~~--------~~~~v~~~~~sp~g~~l~s~s~----------dg~I 466 (626)
+++..++++ +..+.+.+.|..... ..+.... .......+.++|+++.++.+.. .+.|
T Consensus 222 ~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V 300 (373)
T 2mad_H 222 NKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred ecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence 776444444 467899999975321 1121100 1122344788999998887653 3579
Q ss_pred EEEECCCCCCCCCCccCCccceeeeccCCc
Q 006909 467 YVWNYDELCFPSSKQKNSVRSCEHFFSEGV 496 (626)
Q Consensus 467 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~ 496 (626)
.+.|..+...............+.|+|+|.
T Consensus 301 ~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~ 330 (373)
T 2mad_H 301 TSVTGLVGQTSSQISLGHDVDAISVAQDGG 330 (373)
T ss_pred EEEECCCCEEEEEEECCCCcCeEEECCCCC
Confidence 999998864322222222233445555555
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.22 E-value=1.1e-09 Score=110.58 Aligned_cols=245 Identities=12% Similarity=0.057 Sum_probs=157.3
Q ss_pred CcEEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 182 GCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latgs--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
..+..++++|+|+++++.. .++.++||.+.++.. ..|. ..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~--~~~p-----------------------------~~------- 58 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL--IPFP-----------------------------PQ------- 58 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE--EESC-----------------------------CC-------
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe--ecCC-----------------------------Cc-------
Confidence 6799999999999988864 234366666543211 0010 00
Q ss_pred CceeeccCccceEEEEEcCCCeEEEEeC------CCcEEEeccCCCeeeEeecC-------CCCeEEEEEeeCCCCEEEE
Q 006909 260 PLQELHGHKGDVLDLAWSNSNYLLSCSM------DKTVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFIS 326 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~~l~s~s~------d~~v~iwd~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~l~s 326 (626)
.....+|...+..+++.+++.|+.+.. +..|.+||+.+++.+..+.. ...+..++++|.++..+++
T Consensus 59 -~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvt 137 (343)
T 2qe8_A 59 -SGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYIS 137 (343)
T ss_dssp -CSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEE
T ss_pred -ccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEE
Confidence 001224667899999999996665543 47899999999987776642 2356899999823444455
Q ss_pred Ee---CCCcEEEEeCCCCeEEEeccC------------------------------CCCeEEEEEeeCCCEEEEEecCC-
Q 006909 327 GS---IDGKVRIWGVCEKRVVDWADV------------------------------RDVISAICYIPDGKGFIVGSITG- 372 (626)
Q Consensus 327 ~s---~dg~v~iwd~~~~~~~~~~~~------------------------------~~~i~~i~~sp~g~~l~~g~~dg- 372 (626)
.. .++.|.+||+.+++....... ...+..|+|+|+|+.|+++...+
T Consensus 138 d~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~ 217 (343)
T 2qe8_A 138 DPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST 217 (343)
T ss_dssp ECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS
T ss_pred cCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC
Confidence 54 578999999987776553311 12368899999999999887766
Q ss_pred cEEEEEcC---CCcee----eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC-CcceeeeeecCCCCC
Q 006909 373 TCHFYKAS---GNDLK----LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG-VDVIHKFKGLPKSGS 444 (626)
Q Consensus 373 ~i~i~d~~---~~~~~----~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~-~~~~~~~~~~~~~~~ 444 (626)
.+..++.. ..... ...+...+ +......++++++| .++++...++.|.+||. ......+........
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g----~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~ 292 (343)
T 2qe8_A 218 SMYRIKSADLSNLQLTDAELGSKIERYS----EKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKLLVTDEKLSW 292 (343)
T ss_dssp EEEEEEHHHHTCTTCCHHHHHTTCEEEE----ECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEEEEECGGGSC
T ss_pred eEEEEEHHHhcCCCCChhhhhcceEecc----cCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEEEEECCceec
Confidence 44444432 11100 00000001 11356679999997 78888888999999998 322233332223457
Q ss_pred eEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909 445 QMSASFTTTGKHIISIGDDCRVYVWN 470 (626)
Q Consensus 445 v~~~~~sp~g~~l~s~s~dg~I~iwd 470 (626)
+.+++|.++++++++.+..+.+.+|.
T Consensus 293 p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 293 TDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CCeeEECCCCcEEEEeCccccccccc
Confidence 89999999999888877655554443
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.21 E-value=3.4e-09 Score=109.60 Aligned_cols=202 Identities=12% Similarity=0.028 Sum_probs=141.0
Q ss_pred cceEEEEEcCCCeE-EEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCeEEE
Q 006909 269 GDVLDLAWSNSNYL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVD 345 (626)
Q Consensus 269 ~~V~~l~~s~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg--~v~iwd~~~~~~~~ 345 (626)
.....|+|++++.| ++...++.|++||..++............. ++|+| +++.|+++..++ .|.+++..++....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 46789999998854 455556899999999887766655434344 99999 899888888766 78889887654322
Q ss_pred ec----c-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909 346 WA----D-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITS 419 (626)
Q Consensus 346 ~~----~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s 419 (626)
.. . ....+.+++++|++..|+++..++.|+.||..+...... .....+. ....+...++|+|++..++++-.
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~--~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS--LGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC--CCCSSCCEEEEETTTTEEEEEET
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC--CCCCccccEEEeCCCCEEEEEeC
Confidence 22 2 456678899999555666677788999999987653221 0001110 00011239999996546777777
Q ss_pred CCCcEEEEeCCcceeeeeecC-------------CCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909 420 EDSKLRILDGVDVIHKFKGLP-------------KSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 474 (626)
Q Consensus 420 ~dg~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~ 474 (626)
.++.|+.|+.......+.+.. .-.....++++|+|+++++-+ .++.|+.|++.++
T Consensus 287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 789999999765444444421 023578999999999888877 8899999997665
No 216
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.19 E-value=1.6e-09 Score=109.75 Aligned_cols=134 Identities=7% Similarity=0.028 Sum_probs=107.0
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
.+.+ |+.|+| |+++|+++ .++.|++||+.+..
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~-------------------------------------------- 117 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELS-------------------------------------------- 117 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTT--------------------------------------------
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhh--------------------------------------------
Confidence 4667 999999 99999999 88999999998732
Q ss_pred CCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909 259 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~ 338 (626)
.......|...+.++.+.+.+ +++++.||.|.+||+.+++... +...|+|++|+| +| ++.|..||++++|+.
T Consensus 118 -~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~ 189 (388)
T 1xip_A 118 -EFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAW 189 (388)
T ss_dssp -CEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEE
T ss_pred -ccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcC
Confidence 122344566678888877544 8889999999999999887654 456899999999 77 778999999999998
Q ss_pred CCCeE--EE-e------c---cCCCCeEEEEEeeCCCEEEEE
Q 006909 339 CEKRV--VD-W------A---DVRDVISAICYIPDGKGFIVG 368 (626)
Q Consensus 339 ~~~~~--~~-~------~---~~~~~i~~i~~sp~g~~l~~g 368 (626)
..+++ .. + . ++...|.+|+|.+++.++++-
T Consensus 190 ~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 190 RNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp ETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 88774 22 2 1 367889999999999888873
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.17 E-value=3.9e-08 Score=98.49 Aligned_cols=190 Identities=10% Similarity=-0.001 Sum_probs=128.4
Q ss_pred ceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEec
Q 006909 270 DVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA 347 (626)
Q Consensus 270 ~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 347 (626)
-..+.+|+|+ + .+++...++.|..||..+++.. .+.....+.+++++| +++++++. . ..|.+||..+++...+.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKIS-DSKQLIAS-D-DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEE-TTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeC-CCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence 4567889986 4 5666667889999999877643 344567899999999 88777654 3 44999999888765443
Q ss_pred cC-----CCCeEEEEEeeCCCEEEEEec------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909 348 DV-----RDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 416 (626)
Q Consensus 348 ~~-----~~~i~~i~~sp~g~~l~~g~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~ 416 (626)
.. ...+..+.++|+|+++++... .+.|..++ ++.. ..+... ......++|+|++..+++
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~--~~~~~~------~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV--TKLFAD------ISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE--EEEEEE------ESSEEEEEECTTSCEEEE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE--EEeeCC------CcccCCeEEcCCCCEEEE
Confidence 32 235889999999986655432 24555555 3322 111111 135678999999844445
Q ss_pred EEeCCCcEEEEeCC--cc-e----eeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 417 ITSEDSKLRILDGV--DV-I----HKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 417 ~~s~dg~i~iwd~~--~~-~----~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
+.+.++.|.+||.. +. . ..+.. ......+..++++++|++.++...++.|.+|+...
T Consensus 196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g 260 (326)
T 2ghs_A 196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG 260 (326)
T ss_dssp EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC
Confidence 55667899999964 32 1 12222 11234567899999999888777778999999843
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.15 E-value=3.9e-09 Score=108.44 Aligned_cols=257 Identities=9% Similarity=0.050 Sum_probs=160.6
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCC
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKS 242 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (626)
...++..-..+ .++++|||++|+.+. .++.|.++|..+.+.......+.
T Consensus 111 vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g------------------- 169 (426)
T 3c75_H 111 ILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD------------------- 169 (426)
T ss_dssp EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT-------------------
T ss_pred EEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC-------------------
Confidence 33444333344 799999999877765 36789999998754321100000
Q ss_pred CCceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeC--CCcEEEeccCCCeeeEeecCCCCeEEEEEeeC
Q 006909 243 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI 319 (626)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~--d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~ 319 (626)
. . .+ ........++|+|+| +|+.+.. ++.|.+.|+.+++.+..+..... ....|.
T Consensus 170 ----------------~-~-r~-~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~ 227 (426)
T 3c75_H 170 ----------------A-P-RF-LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPA 227 (426)
T ss_dssp ----------------C-C-CC-CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEE
T ss_pred ----------------c-c-cc-ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccC
Confidence 0 0 00 001233467899998 6666653 57899999999999988865432 334452
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEe----ccC-CCC-eEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeec
Q 006909 320 DDNYFISGSIDGKVRIWGVCEKRVVDW----ADV-RDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFH 392 (626)
Q Consensus 320 ~~~~l~s~s~dg~v~iwd~~~~~~~~~----~~~-~~~-i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~ 392 (626)
....+++.+.||++.+.+..++++... ... ..+ ...+.+.+++..++..+..+.+.+.|..+...... .+...
T Consensus 228 g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~ 307 (426)
T 3c75_H 228 SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEAL 307 (426)
T ss_dssp ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESS
T ss_pred CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeec
Confidence 346777778889888888866554421 111 111 12356789999888888899999999976543221 11111
Q ss_pred cccc-c---CCCCeEEEEEcCCCCcEEEEEe---------CCCcEEEEeCCcce--eeeeecCCCCCeEEEEEcCCCC-E
Q 006909 393 DRKK-T---SGNKITGIQFSRDESQRIMITS---------EDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGK-H 456 (626)
Q Consensus 393 ~~~~-~---~~~~i~~l~~s~~~~~~l~~~s---------~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~g~-~ 456 (626)
.... . .......++++|++.+.+++.. .++.|.++|..+.. ..+.. ......+.|+|||+ +
T Consensus 308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---g~~P~gia~spDg~~~ 384 (426)
T 3c75_H 308 TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---GHEIDSINVSQDAEPL 384 (426)
T ss_dssp CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSCE
T ss_pred cccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC---CCCcCeEEEccCCCEE
Confidence 0000 0 0112223689999854444432 23579999987543 33332 22578899999999 8
Q ss_pred EEEEe-CCccEEEEECCCCC
Q 006909 457 IISIG-DDCRVYVWNYDELC 475 (626)
Q Consensus 457 l~s~s-~dg~I~iwd~~~~~ 475 (626)
++++. .++.|.++|..+..
T Consensus 385 lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 385 LYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEcCCCCeEEEEECCCCC
Confidence 88887 58999999999874
No 219
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.05 E-value=4.6e-08 Score=99.24 Aligned_cols=190 Identities=10% Similarity=0.099 Sum_probs=126.4
Q ss_pred eEEEEEcCCCeEEEEeCC------CcEEEeccCCCeeeEeecCC----CCeEEEEEeeCCCCEEEEEe------------
Q 006909 271 VLDLAWSNSNYLLSCSMD------KTVRMWQVGCNQCLNVFDHH----NYVTCVQFNPIDDNYFISGS------------ 328 (626)
Q Consensus 271 V~~l~~s~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~s~s------------ 328 (626)
-..+...|+|.++++..+ +.|.+.|..+++.+..+... ..-..+.|+| +++.+++..
T Consensus 140 Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~ 218 (462)
T 2ece_A 140 LHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLK 218 (462)
T ss_dssp EEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCC
T ss_pred ccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccc
Confidence 445677899966665555 78999999999999888522 2234588899 999888875
Q ss_pred -------CCCcEEEEeCCCCeEEEeccCC---CCeEEEEE--eeCCCEEEEEec------CCcEEEEEcCCCceeeeE-E
Q 006909 329 -------IDGKVRIWGVCEKRVVDWADVR---DVISAICY--IPDGKGFIVGSI------TGTCHFYKASGNDLKLEK-V 389 (626)
Q Consensus 329 -------~dg~v~iwd~~~~~~~~~~~~~---~~i~~i~~--sp~g~~l~~g~~------dg~i~i~d~~~~~~~~~~-~ 389 (626)
.+.+|.+||+.++++....... .....+.| +|+++++++++. +++|.+|....+.....+ +
T Consensus 219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI 298 (462)
T 2ece_A 219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI 298 (462)
T ss_dssp TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE
T ss_pred hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE
Confidence 3689999999988776655443 23445655 999999888875 568888777654433222 1
Q ss_pred eeccccc------------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-----eeeeeecC------------
Q 006909 390 DFHDRKK------------TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-----IHKFKGLP------------ 440 (626)
Q Consensus 390 ~~~~~~~------------~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-----~~~~~~~~------------ 440 (626)
....... ........|.+++||..+.++.-..+.|.+||+.+. ...+..-+
T Consensus 299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~ 378 (462)
T 2ece_A 299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK 378 (462)
T ss_dssp EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence 1111000 002467889999998544444455789999997521 22221110
Q ss_pred CCCCeEEEEEcCCCCEEEEEe
Q 006909 441 KSGSQMSASFTTTGKHIISIG 461 (626)
Q Consensus 441 ~~~~v~~~~~sp~g~~l~s~s 461 (626)
-.+....+.++|||++|+++.
T Consensus 379 ~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 379 LTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCCEEEEcCCCCEEEEEc
Confidence 011367899999999999987
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.05 E-value=1.3e-08 Score=104.62 Aligned_cols=216 Identities=13% Similarity=0.085 Sum_probs=134.0
Q ss_pred EEEEcCCC-eEEEEe----------CCCcEEEeccCCCeeeEeecCC--------CCeEEEEEeeCCCCEEEEEeC--CC
Q 006909 273 DLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDNYFISGSI--DG 331 (626)
Q Consensus 273 ~l~~s~~~-~l~s~s----------~d~~v~iwd~~~~~~~~~~~~~--------~~v~~~~~~p~~~~~l~s~s~--dg 331 (626)
.++++|++ +|+.+. .++.|.++|..+++.+..+... .....+.|+| ++++++++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence 79999998 555554 4678999999999988877532 3456789999 9999998874 57
Q ss_pred cEEEEeCCCCeEEEeccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC-eEEEEEcC
Q 006909 332 KVRIWGVCEKRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK-ITGIQFSR 409 (626)
Q Consensus 332 ~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~s~ 409 (626)
.|.+.|+.+.+++........ ....|++ ..+++.+.||.+.+.+..+++.... .. ........+ ...+.+.+
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~-~~--~~~~v~~~p~~~~~~~~~ 274 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVT-NT--EVFHTEDELLINHPAFSL 274 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE-EC--CCCSCTTSCBCSCCEECT
T ss_pred eEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE-ee--eeeccCCCceeeEeeecC
Confidence 899999999988765554332 3344544 5566777888888888854443211 10 000000111 12356788
Q ss_pred CCCcEEEEEeCCCcEEEEeCCcce----eeeeecC--------CCCCeEEEEEcCCCCEEEEEeC----------CccEE
Q 006909 410 DESQRIMITSEDSKLRILDGVDVI----HKFKGLP--------KSGSQMSASFTTTGKHIISIGD----------DCRVY 467 (626)
Q Consensus 410 ~~~~~l~~~s~dg~i~iwd~~~~~----~~~~~~~--------~~~~v~~~~~sp~g~~l~s~s~----------dg~I~ 467 (626)
++. .++..+..+.|.+.|..... ..+.... .......++++|+++.++.... ++.|.
T Consensus 275 dg~-~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 275 RSG-RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp TTC-EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCC-EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 874 55555678899999964321 1111100 0111223689999988777642 35799
Q ss_pred EEECCCCCCCCCCccCCccceeeeccCCc
Q 006909 468 VWNYDELCFPSSKQKNSVRSCEHFFSEGV 496 (626)
Q Consensus 468 iwd~~~~~~~~~~~~~~~~~~~~~~~~g~ 496 (626)
+.|..+...............+.|+|+|.
T Consensus 354 VID~~T~kvv~~I~vg~~P~gia~spDg~ 382 (426)
T 3c75_H 354 VLNAETGERINKIELGHEIDSINVSQDAE 382 (426)
T ss_dssp EEETTTCCEEEEEEEEEEECEEEECCSSS
T ss_pred EEECCCCeEEEEEECCCCcCeEEEccCCC
Confidence 99999874333222222233445555555
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.03 E-value=4.7e-08 Score=96.83 Aligned_cols=200 Identities=14% Similarity=0.108 Sum_probs=132.4
Q ss_pred CCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909 258 ESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 335 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i 335 (626)
...+..+..+.......+|++++ ++++...++.|..|+. ++.......+...+..+++++ +++++++...++.|.+
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITR 111 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEE
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECC-CCCEEEEECCCCEEEE
Confidence 34456666666778899999986 4667777899999998 454333334667789999999 8887766656678999
Q ss_pred EeCCCCeEEEeccC-----CCCeEEEEEeeCCCEEEE----Eec-------------CCcEEEEEcCCCceeeeEEeecc
Q 006909 336 WGVCEKRVVDWADV-----RDVISAICYIPDGKGFIV----GSI-------------TGTCHFYKASGNDLKLEKVDFHD 393 (626)
Q Consensus 336 wd~~~~~~~~~~~~-----~~~i~~i~~sp~g~~l~~----g~~-------------dg~i~i~d~~~~~~~~~~~~~~~ 393 (626)
|+.. ++...+... ...+..++++|+|+.+++ |.. .+.|..||..++...... .
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~- 186 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---D- 186 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---E-
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---c-
Confidence 9986 554433221 234678999999987776 332 245677776555433221 1
Q ss_pred ccccCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEeCCcce----eeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909 394 RKKTSGNKITGIQFSRDESQRIMITSED------SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDD 463 (626)
Q Consensus 394 ~~~~~~~~i~~l~~s~~~~~~l~~~s~d------g~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d 463 (626)
......++|+|++ +.|+++... +.|.+|+..... ..+.. .....+..++++++|++.++. .+
T Consensus 187 -----~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~lwv~~-~~ 258 (305)
T 3dr2_A 187 -----LDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGWLWSSS-GT 258 (305)
T ss_dssp -----ESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSCEEECC-SS
T ss_pred -----CCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCCEEEec-CC
Confidence 1456789999998 556665554 789999865321 11211 123445678999999955544 44
Q ss_pred ccEEEEECCC
Q 006909 464 CRVYVWNYDE 473 (626)
Q Consensus 464 g~I~iwd~~~ 473 (626)
.|.+|+.+.
T Consensus 259 -gv~~~~~~g 267 (305)
T 3dr2_A 259 -GVCVFDSDG 267 (305)
T ss_dssp -EEEEECTTS
T ss_pred -cEEEECCCC
Confidence 499999854
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.02 E-value=1.2e-08 Score=113.52 Aligned_cols=196 Identities=13% Similarity=0.079 Sum_probs=127.7
Q ss_pred cCccceEEEEEcCCC-eEEE-----EeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCC--------
Q 006909 266 GHKGDVLDLAWSNSN-YLLS-----CSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG-------- 331 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~-~l~s-----~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg-------- 331 (626)
+|...+..++||||| +|+. |+...+|++||+.+++.+...-.......++|+ +++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL--GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE--TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe--CCCEEEEEEecCcccccccc
Confidence 355678899999998 5552 223357999999999876542111113567888 788888887774
Q ss_pred -----cEEEEeCCCCe----EEE-ecc-CCCCeEEEEEeeCCCEEEEEec----CCcEEEEEcCCCceeeeEEeeccccc
Q 006909 332 -----KVRIWGVCEKR----VVD-WAD-VRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKK 396 (626)
Q Consensus 332 -----~v~iwd~~~~~----~~~-~~~-~~~~i~~i~~sp~g~~l~~g~~----dg~i~i~d~~~~~~~~~~~~~~~~~~ 396 (626)
.|++|++.+.. ++. ... +...+..+.|+|||++|+.... ...|+++|+.+.......+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~--- 280 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL--- 280 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS---
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC---
Confidence 39999987654 222 222 3445788999999999876543 24899999877643333332221
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEeCCcce----eeeeecCCCCCeEEEEEcCCCCEEEEEeCCc---cE
Q 006909 397 TSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RV 466 (626)
Q Consensus 397 ~~~~~i~~l~~s~~~~~~l~~~s~d---g~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg---~I 466 (626)
...... ++++|..+++.+..+ +.|.++|+.... ..+.. +...+. .|++++++|+....++ .|
T Consensus 281 ---~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 281 ---DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP--ERQQVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp ---SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC--CCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred ---CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec--CCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence 333443 666665666666554 678999976532 23333 444444 8899999888776543 78
Q ss_pred EEEECCCC
Q 006909 467 YVWNYDEL 474 (626)
Q Consensus 467 ~iwd~~~~ 474 (626)
++|++.++
T Consensus 353 ~~~d~~g~ 360 (693)
T 3iuj_A 353 EQFDYEGK 360 (693)
T ss_dssp EEECTTSC
T ss_pred EEEECCCC
Confidence 99998764
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.94 E-value=8.4e-09 Score=104.15 Aligned_cols=243 Identities=6% Similarity=-0.069 Sum_probs=145.2
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCC
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 243 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (626)
..++..-..+ .+.|+|||++|+.+. .++.|.+||..+++.
T Consensus 59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v---------------------------- 108 (368)
T 1mda_H 59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---------------------------- 108 (368)
T ss_dssp EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE----------------------------
T ss_pred EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE----------------------------
Confidence 3344333345 799999999888875 368899999998543
Q ss_pred CceeecCCccccccCCCceeeccC-------ccceEEEEEcCCC-eEEEEeC--CCcEEE--eccCCCeeeEeecCCCCe
Q 006909 244 HVPVVIPDEVFQIEESPLQELHGH-------KGDVLDLAWSNSN-YLLSCSM--DKTVRM--WQVGCNQCLNVFDHHNYV 311 (626)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~s~~~-~l~s~s~--d~~v~i--wd~~~~~~~~~~~~~~~v 311 (626)
+.++..+ ......++++|+| +++.+.. +..|.+ +|..+ +..+.....
T Consensus 109 -----------------v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~- 167 (368)
T 1mda_H 109 -----------------IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC- 167 (368)
T ss_dssp -----------------EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-
T ss_pred -----------------EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-
Confidence 2222211 1234578999998 6776653 467888 99987 444432221
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEeCCC-----CeEEE-----eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC
Q 006909 312 TCVQFNPIDDNYFISGSIDGKVRIWGVCE-----KRVVD-----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 381 (626)
Q Consensus 312 ~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-----~~~~~-----~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~ 381 (626)
..+.|.....+++.+.||.+.+.|+.+ ++... +.-...+. . .+++..++..+. +.+.+.|+.+
T Consensus 168 --~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~ 240 (368)
T 1mda_H 168 --FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPA 240 (368)
T ss_dssp --CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCS
T ss_pred --eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCC
Confidence 223452445666777889988889876 44321 11112232 3 666777666666 9999999875
Q ss_pred Cceee-eEEeeccc----cccCCCCeEEEEEcCCCCcEEEEEe---C-----CCcEEEEeCCcceeeeeecCCCCCeEEE
Q 006909 382 NDLKL-EKVDFHDR----KKTSGNKITGIQFSRDESQRIMITS---E-----DSKLRILDGVDVIHKFKGLPKSGSQMSA 448 (626)
Q Consensus 382 ~~~~~-~~~~~~~~----~~~~~~~i~~l~~s~~~~~~l~~~s---~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 448 (626)
..... ..+.+... ..........+.++|++..++++.. . ++.+.++|+.+....-... -......+
T Consensus 241 ~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~-vg~~p~gi 319 (368)
T 1mda_H 241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAI 319 (368)
T ss_dssp SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEE
T ss_pred CcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE-CCCCcceE
Confidence 43221 11211100 0000111222689999854444433 2 2456699987543222221 12257899
Q ss_pred EEcCCCC-EEEEEe-CCccEEEEECCCCC
Q 006909 449 SFTTTGK-HIISIG-DDCRVYVWNYDELC 475 (626)
Q Consensus 449 ~~sp~g~-~l~s~s-~dg~I~iwd~~~~~ 475 (626)
+|+|||+ .+++.. .++.|.++|+.+..
T Consensus 320 ~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 320 IAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 9999998 455666 58999999999873
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.93 E-value=2.3e-07 Score=94.84 Aligned_cols=185 Identities=12% Similarity=0.015 Sum_probs=117.0
Q ss_pred CCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEE-EEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCe---
Q 006909 278 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI--- 353 (626)
Q Consensus 278 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i--- 353 (626)
.++.++.++.++.|..+|..+++.+..+.....+.+ ... .+..++.++.++.|..+|..+++.+-.......+
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee
Confidence 357888899999999999999998877754433322 222 2457888888999999999988866433332222
Q ss_pred ---EEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC---e-EEEEEcCCCCcEEEEEeCCCcEEE
Q 006909 354 ---SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK---I-TGIQFSRDESQRIMITSEDSKLRI 426 (626)
Q Consensus 354 ---~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---i-~~l~~s~~~~~~l~~~s~dg~i~i 426 (626)
..... .+..+++++.++.+..+|..+++.................. + ...... + ..+++++.++.+..
T Consensus 179 ~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~--~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 179 RGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV-N--GVVFALAYNGNLTA 253 (376)
T ss_dssp CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE-T--TEEEEECTTSCEEE
T ss_pred cCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE-C--CEEEEEecCcEEEE
Confidence 11222 24578888899999999998877654321110000000000 0 011111 3 37888888999999
Q ss_pred EeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 427 wd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+|..+........ ......+.. ++..|+.++.++.|+.+|..++
T Consensus 254 ~d~~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 254 LDLRSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp EETTTCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred EECCCCcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCC
Confidence 9987665555442 223444443 4677888888999999998876
No 225
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.85 E-value=2.4e-07 Score=97.32 Aligned_cols=187 Identities=13% Similarity=0.126 Sum_probs=128.7
Q ss_pred CC-eEE-EEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEE-e-eCCCCEEEEEe------------------CCCcEE
Q 006909 279 SN-YLL-SCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQF-N-PIDDNYFISGS------------------IDGKVR 334 (626)
Q Consensus 279 ~~-~l~-s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~-~-p~~~~~l~s~s------------------~dg~v~ 334 (626)
|| +++ +...+..|.+.|+.+.++...+. ....+..+++ . | ++.++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEE
Confidence 55 444 44556779999999999888553 4556889888 4 7 888888884 245799
Q ss_pred EEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC--------------------------------------cEEE
Q 006909 335 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--------------------------------------TCHF 376 (626)
Q Consensus 335 iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg--------------------------------------~i~i 376 (626)
+.|..+.++............++++|+|+++++.+.+. .+.+
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 99999988776555444567788999999999988553 2444
Q ss_pred EEcCC--CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee-----------eeeecCCCC
Q 006909 377 YKASG--NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----------KFKGLPKSG 443 (626)
Q Consensus 377 ~d~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-----------~~~~~~~~~ 443 (626)
.|..+ .......+.. +....++.++|||...++++..+.+|.++|..+... ......-..
T Consensus 259 ID~~~~~~~~~~~~Ipv-------g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~ 331 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPI-------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL 331 (595)
T ss_dssp EECSGGGCCSSEEEEEE-------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred EeCcccCCceeEEEEec-------CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence 55444 1110111111 134567999999965566666789999999875421 111222345
Q ss_pred CeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 444 SQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 444 ~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
....++|+|+|...++.-.|++|.+||++.
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 688999999994444556799999999986
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.80 E-value=1.6e-08 Score=102.02 Aligned_cols=256 Identities=9% Similarity=-0.051 Sum_probs=154.0
Q ss_pred eEEEEeCCC----cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe----------CCCcEEEEeCCCCeEEEe
Q 006909 281 YLLSCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----------IDGKVRIWGVCEKRVVDW 346 (626)
Q Consensus 281 ~l~s~s~d~----~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~ 346 (626)
.+++...++ +|.+.|..+++.+.++.....- .+.++| ++++++++. .++.|.+||+.+.+.+..
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~ 111 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD 111 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence 344444444 7889999999999998633333 799999 998888876 368899999999888765
Q ss_pred ccCC--------CCeEEEEEeeCCCEEEEEec--CCcEEE--EEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909 347 ADVR--------DVISAICYIPDGKGFIVGSI--TGTCHF--YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 414 (626)
Q Consensus 347 ~~~~--------~~i~~i~~sp~g~~l~~g~~--dg~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~ 414 (626)
.... .....+.++|||++++++.. ...+.+ +|+.+ ...+...+ . +.+.|++...
T Consensus 112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~-------~---~~~~p~g~~~ 177 (368)
T 1mda_H 112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSAS-------C---FHIHPGAAAT 177 (368)
T ss_dssp EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSS-------C---CCCEEEETTE
T ss_pred EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCC-------c---eEEccCCCeE
Confidence 4322 34668999999999999875 356888 88766 22222211 1 2234555566
Q ss_pred EEEEeCCCcEEEEeCCc-----ceeeee----ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC--
Q 006909 415 IMITSEDSKLRILDGVD-----VIHKFK----GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN-- 483 (626)
Q Consensus 415 l~~~s~dg~i~iwd~~~-----~~~~~~----~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-- 483 (626)
+++.+.|+.+.+.|... ...... ......+. . ++++..++..+. +.|.+.|+.+..........
T Consensus 178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~ 252 (368)
T 1mda_H 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGN 252 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSS
T ss_pred EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEec
Confidence 77777888888888764 211100 00112233 3 566776666666 99999998753211000000
Q ss_pred -----------CccceeeeccCCcEEEEecCCC---------CcccccccCCCccccCccccccCCCCcccCCCcccCCc
Q 006909 484 -----------SVRSCEHFFSEGVSVAVQWPGI---------GTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGS 543 (626)
Q Consensus 484 -----------~~~~~~~~~~~g~~~av~~s~~---------~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 543 (626)
.-.....+++++..+-++..|+ +..++.+..... ...+. -+....++
T Consensus 253 ~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v------------v~~i~-vg~~p~gi 319 (368)
T 1mda_H 253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT------------SGPIS-NGHDSDAI 319 (368)
T ss_dssp CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE------------EECCE-EEEEECEE
T ss_pred cccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE------------EEEEE-CCCCcceE
Confidence 0001134555555444433211 112222222111 11111 12247889
Q ss_pred cccCCCCcccccCC-CCCCCCCCCcccC
Q 006909 544 WFSNDGPCRGSATW-PAEKLPLWDVTID 570 (626)
Q Consensus 544 ~~s~dg~~l~s~~~-~d~~i~vwd~~~~ 570 (626)
+|+|||++++.+.+ .++.|.++|+.+.
T Consensus 320 ~~s~Dg~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 320 IAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred EECCCCCEEEEEccCCCCeEEEEECCCC
Confidence 99999996655554 5789999999887
No 227
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.79 E-value=1e-06 Score=88.73 Aligned_cols=202 Identities=6% Similarity=0.005 Sum_probs=126.4
Q ss_pred cceEEEEEcCCC-eEEEEe--CCCcEEEeccCCCeeeEee--------cCCCCeEEEEEeeCCCCEEEEEeC-----CCc
Q 006909 269 GDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVF--------DHHNYVTCVQFNPIDDNYFISGSI-----DGK 332 (626)
Q Consensus 269 ~~V~~l~~s~~~-~l~s~s--~d~~v~iwd~~~~~~~~~~--------~~~~~v~~~~~~p~~~~~l~s~s~-----dg~ 332 (626)
..+..++++++| .+++.. .++.++||.+.+++.. .+ .+...+.++++++ +++++++-.. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCCe
Confidence 688999999998 445543 2343556655555433 22 1346799999999 7776665433 578
Q ss_pred EEEEeCCCCeEEEeccC-------CCCeEEEEEeeCCCEEEEE-e---cCCcEEEEEcCCCceeeeEEee----------
Q 006909 333 VRIWGVCEKRVVDWADV-------RDVISAICYIPDGKGFIVG-S---ITGTCHFYKASGNDLKLEKVDF---------- 391 (626)
Q Consensus 333 v~iwd~~~~~~~~~~~~-------~~~i~~i~~sp~g~~l~~g-~---~dg~i~i~d~~~~~~~~~~~~~---------- 391 (626)
|.+||+.++++...... ...+..++++|++..++++ . .++.|.+||+.+++.... ...
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~-~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV-LQGYPGIAPEDID 173 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE-CTTCTTTSCCSCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE-ecCCCcccccccc
Confidence 99999998885543222 2346889999865555444 4 578999999876653211 100
Q ss_pred ---ccccc----c------CCCCeEEEEEcCCCCcEEEEEeCCC-cEEEEeCCcc----------eeeeeecCCCCCeEE
Q 006909 392 ---HDRKK----T------SGNKITGIQFSRDESQRIMITSEDS-KLRILDGVDV----------IHKFKGLPKSGSQMS 447 (626)
Q Consensus 392 ---~~~~~----~------~~~~i~~l~~s~~~~~~l~~~s~dg-~i~iwd~~~~----------~~~~~~~~~~~~v~~ 447 (626)
.+..- . ....+..|+|+|+| +.|+.+..++ .+..++.... ...+....+......
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg 252 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG 252 (343)
T ss_dssp CEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred eeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence 00000 0 01346889999998 5666665554 6665553210 001111112335677
Q ss_pred EEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 448 ASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 448 ~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
++++++|+++++...++.|.+||..++
T Consensus 253 ia~d~~G~l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 253 ISIDKDHNIYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp EEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred EEECCCCCEEEEccCCCeEEEEECCCC
Confidence 999999999999988999999998443
No 228
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.76 E-value=1.1e-05 Score=77.72 Aligned_cols=195 Identities=8% Similarity=-0.011 Sum_probs=124.9
Q ss_pred cceEEEEEcCC-CeEE-EEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEE-EEEeCCCcEEEEeCCCCeEE
Q 006909 269 GDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVV 344 (626)
Q Consensus 269 ~~V~~l~~s~~-~~l~-s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l-~s~s~dg~v~iwd~~~~~~~ 344 (626)
..+..++|+++ +.|+ +-..++.|..++..++.....+. .......++++| ++..+ ++-...+.|.++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~-~~~~lyv~d~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH-LGRTIFWTDSQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEe-cCCeEEEEECCCCEEEEEEcCCCCEE
Confidence 45788999985 4554 55557899999998665443333 225788999998 55544 45455678999998764433
Q ss_pred EeccC-CCCeEEEEEeeCCCEEEEEec---CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909 345 DWADV-RDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 420 (626)
Q Consensus 345 ~~~~~-~~~i~~i~~sp~g~~l~~g~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~ 420 (626)
..... ......++++|++..|+.+.. .+.|..+++....... +... .......+++++++..++++-..
T Consensus 115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~--~~~~-----~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI--LAQD-----NLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE--EECT-----TCSCEEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE--EEEC-----CCCCCcEEEEcCCCCEEEEEECC
Confidence 22222 256789999997666666554 3688888886543211 1111 12467899999987556666667
Q ss_pred CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909 421 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 474 (626)
Q Consensus 421 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~ 474 (626)
.+.|.++|........... .......++.. +..|+.+. ..+.|.++|..++
T Consensus 188 ~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp TTEEEEEETTEEEEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred CCEEEEEecCCCceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC
Confidence 7899999976432211111 22345667654 45555444 5689999998876
No 229
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.75 E-value=2.6e-06 Score=84.85 Aligned_cols=257 Identities=13% Similarity=0.067 Sum_probs=149.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909 183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 262 (626)
Q Consensus 183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (626)
...+++++++|+++.++..++.|..|+..++......... ..... . ........
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~---------------~---------~~~g~~~~ 73 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYAS--PYWNK---------------A---------FCENSTDA 73 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESC--TTCCH---------------H---------HHTTCCCG
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEeccc--ccccc---------------c---------ccccccch
Confidence 3567889999997888888899999987653221110000 00000 0 00000000
Q ss_pred eeccCccceEEEEEcC-CCeEEEEeCCCcEEEeccCCCeeeEeec-----CCCCeEEEEEeeCCCCEEEEEeC-------
Q 006909 263 ELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSI------- 329 (626)
Q Consensus 263 ~~~~h~~~V~~l~~s~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s~s~------- 329 (626)
........+..+++.+ ++.|+.+...+.|..+|..++....... .......+++.+.+++++++-..
T Consensus 74 ~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~ 153 (322)
T 2fp8_A 74 EKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRG 153 (322)
T ss_dssp GGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTC
T ss_pred hccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccc
Confidence 0001123578899997 7877777666668889887654322211 12356788888634565555322
Q ss_pred ----------CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEE-ecCCcEEEEEcCCCcee-eeEEeecccccc
Q 006909 330 ----------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLK-LEKVDFHDRKKT 397 (626)
Q Consensus 330 ----------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~ 397 (626)
++.|..||..+++.......-.....++++|+|+.|+++ +..+.|..|++.+.... ...+. . .
T Consensus 154 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~--~-- 228 (322)
T 2fp8_A 154 VQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-K--I-- 228 (322)
T ss_dssp HHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-E--C--
T ss_pred cceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-e--C--
Confidence 367888998777655443333456679999999977666 45689999998754221 11111 1 1
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeC----------CCcEEEEeCCc-ceeeeeecCC--CCCeEEEEEcCCCCEEEEEeCCc
Q 006909 398 SGNKITGIQFSRDESQRIMITSE----------DSKLRILDGVD-VIHKFKGLPK--SGSQMSASFTTTGKHIISIGDDC 464 (626)
Q Consensus 398 ~~~~i~~l~~s~~~~~~l~~~s~----------dg~i~iwd~~~-~~~~~~~~~~--~~~v~~~~~sp~g~~l~s~s~dg 464 (626)
.. ...+++.++| .++++... .+.|..+|... ....+..... ...+..+++ .++++.++....+
T Consensus 229 -~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~ 304 (322)
T 2fp8_A 229 -PN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHG 304 (322)
T ss_dssp -SS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCS
T ss_pred -CC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCC
Confidence 13 7889999998 45555443 46788888642 2333332211 234666666 4566666656678
Q ss_pred cEEEEECCCC
Q 006909 465 RVYVWNYDEL 474 (626)
Q Consensus 465 ~I~iwd~~~~ 474 (626)
.|.++++...
T Consensus 305 ~i~~~~~~~~ 314 (322)
T 2fp8_A 305 SVGILVYDKK 314 (322)
T ss_dssp EEEEEEC---
T ss_pred ceEEEecccc
Confidence 8999998653
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.73 E-value=1.3e-06 Score=96.37 Aligned_cols=218 Identities=10% Similarity=0.049 Sum_probs=136.0
Q ss_pred CCeEEEEeC------CCcEEEeccCCCeeeEeecCCCC---------------------------------eEEEEEeeC
Q 006909 279 SNYLLSCSM------DKTVRMWQVGCNQCLNVFDHHNY---------------------------------VTCVQFNPI 319 (626)
Q Consensus 279 ~~~l~s~s~------d~~v~iwd~~~~~~~~~~~~~~~---------------------------------v~~~~~~p~ 319 (626)
++.++.++. ++.|+.+|..+|+.+..+..... ...++++|
T Consensus 174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~- 252 (677)
T 1kb0_A 174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA- 252 (677)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-
T ss_pred CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-
Confidence 455555543 68999999999999877742111 12567888
Q ss_pred CCCEEEEEeCCC-------------------cEEEEeCCCCeEEEecc---CC-------CCeEEEEEeeCC---CEEEE
Q 006909 320 DDNYFISGSIDG-------------------KVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDG---KGFIV 367 (626)
Q Consensus 320 ~~~~l~s~s~dg-------------------~v~iwd~~~~~~~~~~~---~~-------~~i~~i~~sp~g---~~l~~ 367 (626)
+++.++.++.++ .|..+|..+++.+-... +. .....+....+| ..+++
T Consensus 253 ~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~ 332 (677)
T 1kb0_A 253 ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILH 332 (677)
T ss_dssp TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEE
Confidence 788888877654 49999999988763221 21 123333444577 68899
Q ss_pred EecCCcEEEEEcCCCceeeeEEeecccc-----ccCCC------------------------CeEEEEEcCCCCcEEEEE
Q 006909 368 GSITGTCHFYKASGNDLKLEKVDFHDRK-----KTSGN------------------------KITGIQFSRDESQRIMIT 418 (626)
Q Consensus 368 g~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~------------------------~i~~l~~s~~~~~~l~~~ 418 (626)
++.+|.++++|..+++..... .+.... ..... .-..++++|++ .++++.
T Consensus 333 ~~~~G~l~~lD~~tG~~l~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~ 410 (677)
T 1kb0_A 333 APKNGFFFVLDRTNGKFISAK-NFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLP 410 (677)
T ss_dssp CCTTSEEEEEETTTCCEEEEE-ESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEE
T ss_pred ECCCCEEEEEECCCCCEeccc-cccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEe
Confidence 999999999999998875432 111000 00000 01257888886 466554
Q ss_pred eC-------------------------------------------CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC
Q 006909 419 SE-------------------------------------------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK 455 (626)
Q Consensus 419 s~-------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~ 455 (626)
.. .+.|..||..+........ +..++....+...+.
T Consensus 411 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~ 489 (677)
T 1kb0_A 411 AQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGN 489 (677)
T ss_dssp EEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTT
T ss_pred ChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCC
Confidence 32 2789999988665555442 233444555667788
Q ss_pred EEEEEeCCccEEEEECCCCCCCCCCcc--CCccceeeeccCCcEEEE
Q 006909 456 HIISIGDDCRVYVWNYDELCFPSSKQK--NSVRSCEHFFSEGVSVAV 500 (626)
Q Consensus 456 ~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~g~~~av 500 (626)
.++.++.||.+++||..++........ .....-..+..+|....+
T Consensus 490 ~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 490 VVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 999999999999999998854332221 112223344566654433
No 231
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.73 E-value=3.1e-06 Score=80.68 Aligned_cols=209 Identities=11% Similarity=0.026 Sum_probs=137.0
Q ss_pred cccccccccC--cEEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909 173 TSQEIQAHKG--CIWTLKFSPDGRYLASGGE--DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 248 (626)
Q Consensus 173 ~~~~l~~H~~--~V~~l~fspdg~~Latgs~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (626)
..+++ .|.. ....+.|+|++.+.++.+. ++.|.+.|+.+++......
T Consensus 11 vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~---------------------------- 61 (266)
T 2iwa_A 11 VLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK---------------------------- 61 (266)
T ss_dssp EEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE----------------------------
T ss_pred EEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe----------------------------
Confidence 33444 3554 3679999998765555543 5799999999865422110
Q ss_pred cCCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCC-CCeEEEEEeeCCCCEEEEE
Q 006909 249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~ 327 (626)
+..+ .....+++..+...++.-.++.+.++|..+.+.+..+... .. ...+++ +++.++.+
T Consensus 62 ---------------l~~~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~-Dg~~l~vs 122 (266)
T 2iwa_A 62 ---------------MDDS-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLAT-DGKILYGS 122 (266)
T ss_dssp ---------------CCTT-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEE-CSSSEEEE
T ss_pred ---------------cCCC-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEE-CCCEEEEE
Confidence 1111 1223456554335555667899999999999999988644 32 234556 67766666
Q ss_pred eCCCcEEEEeCCCCeEEEeccCC------CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccc-------
Q 006909 328 SIDGKVRIWGVCEKRVVDWADVR------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR------- 394 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~~~~~~------~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~------- 394 (626)
..++.|.++|..+.+........ ..++.+.|. +|...+....++.|.+.|..+++... .+.+.+.
T Consensus 123 ~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~-~I~~~g~~~~~~~~ 200 (266)
T 2iwa_A 123 DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLG-WILLPNLRKKLIDE 200 (266)
T ss_dssp CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEE-EEECHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEE-EEECCCcccccccc
Confidence 67889999999987766543321 236678887 77544444467899999999887633 3433211
Q ss_pred cccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909 395 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 431 (626)
Q Consensus 395 ~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~ 431 (626)
.........+|+|+|++..+++++...+++.+.++..
T Consensus 201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 1112246789999999877777888889998888643
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.73 E-value=6.7e-09 Score=105.96 Aligned_cols=219 Identities=11% Similarity=0.027 Sum_probs=113.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccce
Q 006909 192 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDV 271 (626)
Q Consensus 192 dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 271 (626)
++..+++++.||.|..||..+++.. ..+.. +.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~---------------------------------------------W~~~~--~~~ 40 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIK---------------------------------------------WTLKE--DPV 40 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEE---------------------------------------------EEEEC--CCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE---------------------------------------------EEecC--CCc
Confidence 5778999999999999999886442 11111 122
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCC--CeE-EEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEec
Q 006909 272 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVT-CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA 347 (626)
Q Consensus 272 ~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~--~v~-~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 347 (626)
.+..+..++ .+++++.|+.|+.||..+|+.+..+.... .+. +..+. .+..+++++.++.|+.||..+++.+-..
T Consensus 41 ~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~ 118 (369)
T 2hz6_A 41 LQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTL 118 (369)
T ss_dssp CCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC--------
T ss_pred eecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEe
Confidence 222233445 67777899999999999888776654221 110 00111 3456788888999999999998876433
Q ss_pred cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC--CcEEEEEeCCCcEE
Q 006909 348 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLR 425 (626)
Q Consensus 348 ~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~--~~~l~~~s~dg~i~ 425 (626)
.... ...++|++..+++++.++.|+.||..+++..... .... .....+.++. ...+++++.+|.|.
T Consensus 119 ~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~-~~~~--------~~~~~~~~~~~~~~~v~~~~~dg~v~ 186 (369)
T 2hz6_A 119 SSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA-TYFD--------YAASLPEDDVDYKMSHFVSNGDGLVV 186 (369)
T ss_dssp -----------------EEEEEEEEEEECCCSSSSSCCCEE-EEEE--------ECCBCCCCCTTCCCCEEEEETSCEEE
T ss_pred cCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeE-eccc--------ccCccccCCccccceEEEECCCCEEE
Confidence 3222 2345678889999999999999999887754331 1111 1112223321 03577889999999
Q ss_pred EEeCCcceeeeeecCCCCCeEE-EEEcCCCCEE----EEEeCCccEEEEECCCC
Q 006909 426 ILDGVDVIHKFKGLPKSGSQMS-ASFTTTGKHI----ISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 426 iwd~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l----~s~s~dg~I~iwd~~~~ 474 (626)
.||..+........ ...++.. ..++++|... +.+ ++.++.+|..++
T Consensus 187 a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG 237 (369)
T 2hz6_A 187 TVDSESGDVLWIQN-YASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSG 237 (369)
T ss_dssp EECTTTCCEEEEEE-CSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHH
T ss_pred EEECCCCcEEEEec-CCCceEEEEEecCCceEeccceeec--ccceeeeehhcC
Confidence 99987655544433 2334433 3445566432 122 345555665444
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.72 E-value=1.3e-06 Score=96.57 Aligned_cols=223 Identities=13% Similarity=0.067 Sum_probs=136.2
Q ss_pred CCeEEEEe------CCCcEEEeccCCCeeeEeecCC--C------------------------------CeEEEEEeeCC
Q 006909 279 SNYLLSCS------MDKTVRMWQVGCNQCLNVFDHH--N------------------------------YVTCVQFNPID 320 (626)
Q Consensus 279 ~~~l~s~s------~d~~v~iwd~~~~~~~~~~~~~--~------------------------------~v~~~~~~p~~ 320 (626)
++.++.++ .++.|..||..+|+.+..+... . ....++++| +
T Consensus 167 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~ 245 (689)
T 1yiq_A 167 NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-E 245 (689)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-T
T ss_pred CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-C
Confidence 45555543 3689999999999988776411 0 012577888 7
Q ss_pred CCEEEEEeCCCc-------------------EEEEeCCCCeEEEecc---CC-------CCeEEEEEeeCCC---EEEEE
Q 006909 321 DNYFISGSIDGK-------------------VRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---GFIVG 368 (626)
Q Consensus 321 ~~~l~s~s~dg~-------------------v~iwd~~~~~~~~~~~---~~-------~~i~~i~~sp~g~---~l~~g 368 (626)
.+.++.++.++. |..+|..+++.+-... +. ..+.......+|+ .++.+
T Consensus 246 ~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~ 325 (689)
T 1yiq_A 246 LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQA 325 (689)
T ss_dssp TTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEE
Confidence 888888887763 9999999988763221 21 1222233344665 78899
Q ss_pred ecCCcEEEEEcCCCceeeeEEeec----cc-----------------ccc-----------CCCCeEEEEEcCCCCcEEE
Q 006909 369 SITGTCHFYKASGNDLKLEKVDFH----DR-----------------KKT-----------SGNKITGIQFSRDESQRIM 416 (626)
Q Consensus 369 ~~dg~i~i~d~~~~~~~~~~~~~~----~~-----------------~~~-----------~~~~i~~l~~s~~~~~~l~ 416 (626)
+.+|.++++|..+++......... .. ... -...-..++++|+. .+++
T Consensus 326 ~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~y 404 (689)
T 1yiq_A 326 PKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVY 404 (689)
T ss_dssp CTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEE
T ss_pred CCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEE
Confidence 999999999999888753211000 00 000 00112237888876 4555
Q ss_pred EEeC---------------------------------------------CCcEEEEeCCcceeeeeecCCCCCeEEEEEc
Q 006909 417 ITSE---------------------------------------------DSKLRILDGVDVIHKFKGLPKSGSQMSASFT 451 (626)
Q Consensus 417 ~~s~---------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 451 (626)
+... +|.|..||..+.........+ .+.....++
T Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~ 483 (689)
T 1yiq_A 405 IPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLS 483 (689)
T ss_dssp EEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEEE
T ss_pred EeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CCccCccce
Confidence 5421 377999998876655554322 233334556
Q ss_pred CCCCEEEEEeCCccEEEEECCCCCCCCCCcc--CCccceeeeccCCcEEEEecCC
Q 006909 452 TTGKHIISIGDDCRVYVWNYDELCFPSSKQK--NSVRSCEHFFSEGVSVAVQWPG 504 (626)
Q Consensus 452 p~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~g~~~av~~s~ 504 (626)
..+.+++.++.|+.|+.||..++........ .....-+.+..+|....+..+.
T Consensus 484 tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 484 TAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 6788999999999999999999855433322 1122234455677654433333
No 234
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.70 E-value=5.1e-06 Score=79.20 Aligned_cols=198 Identities=7% Similarity=0.003 Sum_probs=132.5
Q ss_pred ceEEEEEcCCCeEEEEe-C--CCcEEEeccCCCeeeEeecCCC--CeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 006909 270 DVLDLAWSNSNYLLSCS-M--DKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344 (626)
Q Consensus 270 ~V~~l~~s~~~~l~s~s-~--d~~v~iwd~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~ 344 (626)
....++|++++.|+.++ . ++.|++.|+.+++.+..+.... ....+++. .+...++.-.++.+.++|..+.+++
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 46899999988655543 2 5799999999999998875333 33345554 3344445556789999999998877
Q ss_pred EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 006909 345 DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL 424 (626)
Q Consensus 345 ~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i 424 (626)
...... .-....++++|+.++++..++.|.++|..+.+.... +..... ...-..+..+.|. +| ..++....++.|
T Consensus 100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~-I~Vg~~-~~p~~~~nele~~-dg-~lyvn~~~~~~V 174 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKK-HNVKYN-GHRVIRLNELEYI-NG-EVWANIWQTDCI 174 (266)
T ss_dssp EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEE-EECEET-TEECCCEEEEEEE-TT-EEEEEETTSSEE
T ss_pred EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEE-EEECCC-CcccccceeEEEE-CC-EEEEecCCCCeE
Confidence 655433 112344667898888888889999999988765433 222211 0111346788888 65 555555568999
Q ss_pred EEEeCCcc--eeeeeec-----------CCCCCeEEEEEcCCCCEEE-EEeCCccEEEEECCCC
Q 006909 425 RILDGVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHII-SIGDDCRVYVWNYDEL 474 (626)
Q Consensus 425 ~iwd~~~~--~~~~~~~-----------~~~~~v~~~~~sp~g~~l~-s~s~dg~I~iwd~~~~ 474 (626)
.+.|..+. ...+... ......+.++|+|+++.++ ++...+.|++-++...
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 99998743 3333321 1124568999999987655 5556788999888764
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.68 E-value=2.9e-06 Score=86.19 Aligned_cols=189 Identities=7% Similarity=0.038 Sum_probs=124.3
Q ss_pred CCC--eEEEEeCCCcEEEeccCCC----eeeEeec-------CC-CCeEEEEEeeCCCCEEEEEeCC------CcEEEEe
Q 006909 278 NSN--YLLSCSMDKTVRMWQVGCN----QCLNVFD-------HH-NYVTCVQFNPIDDNYFISGSID------GKVRIWG 337 (626)
Q Consensus 278 ~~~--~l~s~s~d~~v~iwd~~~~----~~~~~~~-------~~-~~v~~~~~~p~~~~~l~s~s~d------g~v~iwd 337 (626)
.++ .++++-.++.|.++|+.+. +..+++. .. .....+...| ++ +++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence 555 5667788899999999765 6666662 12 2455677888 88 77776655 7899999
Q ss_pred CCCCeEEEeccCC----CCeEEEEEeeCCCEEEEEe-------------------cCCcEEEEEcCCCceeeeEEeeccc
Q 006909 338 VCEKRVVDWADVR----DVISAICYIPDGKGFIVGS-------------------ITGTCHFYKASGNDLKLEKVDFHDR 394 (626)
Q Consensus 338 ~~~~~~~~~~~~~----~~i~~i~~sp~g~~l~~g~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~ 394 (626)
..+.+++...... .....+.|+|+++.+++.. .+.+|.+||+.+.+. ...+....
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~-~~tI~vg~- 248 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR-IHSLTLGE- 248 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE-EEEEESCT-
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE-eeEEecCC-
Confidence 9998877644322 2234578899999888874 368999999987643 33333311
Q ss_pred cccCCCCeEEEEE--cCCCCcEEEEEe-----CCCcEEEEeCCcc----eeeeeecCC----------------CCCeEE
Q 006909 395 KKTSGNKITGIQF--SRDESQRIMITS-----EDSKLRILDGVDV----IHKFKGLPK----------------SGSQMS 447 (626)
Q Consensus 395 ~~~~~~~i~~l~~--s~~~~~~l~~~s-----~dg~i~iwd~~~~----~~~~~~~~~----------------~~~v~~ 447 (626)
.+.....+.| +|++...++++. .+++|.+|..... .+.+..... ......
T Consensus 249 ---~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 249 ---ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp ---TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred ---CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 0123455656 999854444445 6778877653211 111111000 245778
Q ss_pred EEEcCCCCEEEEEeC-CccEEEEECCC
Q 006909 448 ASFTTTGKHIISIGD-DCRVYVWNYDE 473 (626)
Q Consensus 448 ~~~sp~g~~l~s~s~-dg~I~iwd~~~ 473 (626)
+.+||||++|.++.. .+.|.+||+..
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 999999999988765 68999999964
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.64 E-value=5.5e-06 Score=84.42 Aligned_cols=181 Identities=7% Similarity=0.024 Sum_probs=117.9
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeE------EEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCC
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT------CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 352 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~------~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 352 (626)
++.++.++.++.|..+|..+++.+..+.....+. .... .+..++.++.++.|..+|..+++..-......+
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~ 219 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQA 219 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence 5688888999999999999999888776443332 2222 245778888899999999998876543322111
Q ss_pred --------eEEEEEee--CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 006909 353 --------ISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 422 (626)
Q Consensus 353 --------i~~i~~sp--~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg 422 (626)
+..+...| .+..+++++.++.+..+|..+++..... .. .....+... + ..+++++.++
T Consensus 220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~---~~------~~~~~~~~~-~--~~l~~~~~~g 287 (376)
T 3q7m_A 220 TGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKR---EL------GSVNDFIVD-G--NRIYLVDQND 287 (376)
T ss_dssp ----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEE---CC------CCEEEEEEE-T--TEEEEEETTC
T ss_pred CCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeec---cC------CCCCCceEE-C--CEEEEEcCCC
Confidence 00011111 3567888889999999999887754331 11 234444443 2 3788888899
Q ss_pred cEEEEeCCcceeeeeecC-CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCC
Q 006909 423 KLRILDGVDVIHKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 476 (626)
Q Consensus 423 ~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 476 (626)
.|..+|..+......... ....+..... .+..|+.++.+|.|+++|..++..
T Consensus 288 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 288 RVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp CEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred eEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcE
Confidence 999999876655544421 1122222222 357888899999999999988743
No 237
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.63 E-value=3.9e-05 Score=75.66 Aligned_cols=225 Identities=12% Similarity=0.069 Sum_probs=137.0
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
.....++|+++|+++++-..++.|..||.....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~----------------------------------------------- 64 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ----------------------------------------------- 64 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-----------------------------------------------
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-----------------------------------------------
Confidence 457789999999977777678888888865410
Q ss_pred eeeccCccceEEEEEcCCCeEEEEeC--CC-cEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 262 QELHGHKGDVLDLAWSNSNYLLSCSM--DK-TVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~~l~s~s~--d~-~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
.........+..+++.+++.|+.+.. ++ .|..+|..+++...... .......++..+ ++..+++-..++.|..+
T Consensus 65 ~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~ 143 (306)
T 2p4o_A 65 QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLI 143 (306)
T ss_dssp EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEE
Confidence 00111123578899999885555442 22 46667777776544332 223345555554 44445554458899999
Q ss_pred eCCCCe--EEEec---------cCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCC-CceeeeEEeeccccccCCCCeE
Q 006909 337 GVCEKR--VVDWA---------DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG-NDLKLEKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 337 d~~~~~--~~~~~---------~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~i~ 403 (626)
|..++. +.... ..-...+.+ +|+++.|+++. ..+.|..|++.. +.......... .....
T Consensus 144 d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~------~~~P~ 215 (306)
T 2p4o_A 144 DVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE------QTNID 215 (306)
T ss_dssp ETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE------SCCCS
T ss_pred eCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec------cCCCC
Confidence 987642 22111 111234555 88888776655 467899999875 22211111111 13456
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCcceeee-eecCCCCCeEEEEEc---CCCCEEEEEeCC
Q 006909 404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASFT---TTGKHIISIGDD 463 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s---p~g~~l~s~s~d 463 (626)
.+++.++| +++++....+.|.++|........ ........+.+++|. |+++.|+.++..
T Consensus 216 gi~vd~dG-~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 216 DFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp SEEEBTTC-CEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CeEECCCC-CEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 78999998 676666778899999965322222 122223568899998 888877776654
No 238
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.63 E-value=8.9e-07 Score=97.79 Aligned_cols=193 Identities=12% Similarity=0.127 Sum_probs=121.0
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEeecCCCC-----------e-EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY-----------V-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 346 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~-----------v-~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 346 (626)
++.++.++.++.|..+|..+|+.+..+..... + ..+.+ .+..+++++.|+.|..+|..+++.+-.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV---WKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE---ECCEEEEEccCCEEEEEECCCCCEeee
Confidence 56888888899999999999999988753221 1 12233 456788899999999999999887632
Q ss_pred ccCC------CCeEEEEEeeCCCEEEEEe------cCCcEEEEEcCCCceeeeEEeeccccc------------------
Q 006909 347 ADVR------DVISAICYIPDGKGFIVGS------ITGTCHFYKASGNDLKLEKVDFHDRKK------------------ 396 (626)
Q Consensus 347 ~~~~------~~i~~i~~sp~g~~l~~g~------~dg~i~i~d~~~~~~~~~~~~~~~~~~------------------ 396 (626)
.... ..+.+.-.-.++ .+++++ .+|.|+.||..+++.............
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred ecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 2221 111110011244 455554 368999999999887544221110000
Q ss_pred ------cCCCCeEEEEEcCCCCcEEEEEeCCCc-------------------EEEEeCCcceeeeee--cCCC-------
Q 006909 397 ------TSGNKITGIQFSRDESQRIMITSEDSK-------------------LRILDGVDVIHKFKG--LPKS------- 442 (626)
Q Consensus 397 ------~~~~~i~~l~~s~~~~~~l~~~s~dg~-------------------i~iwd~~~~~~~~~~--~~~~------- 442 (626)
........+++.|++ .++++++.++. |..+|..+....... ..|.
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp THHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred eeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 011122357888876 57888877753 999998765554433 2121
Q ss_pred CCeEEEEEcCCCC---EEEEEeCCccEEEEECCCCCC
Q 006909 443 GSQMSASFTTTGK---HIISIGDDCRVYVWNYDELCF 476 (626)
Q Consensus 443 ~~v~~~~~sp~g~---~l~s~s~dg~I~iwd~~~~~~ 476 (626)
..+.......+|+ .|+.++.+|.++++|..++..
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 1222223334665 788999999999999998854
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.62 E-value=8.2e-07 Score=93.37 Aligned_cols=198 Identities=11% Similarity=0.043 Sum_probs=131.3
Q ss_pred ceEEEEE-c-CCC-eEEEEe------------------CCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe
Q 006909 270 DVLDLAW-S-NSN-YLLSCS------------------MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 270 ~V~~l~~-s-~~~-~l~s~s------------------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s 328 (626)
.+..+++ + |++ ++++++ .++.+.+.|..+.+....+.-......++++| +++++++.+
T Consensus 135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~ 213 (595)
T 1fwx_A 135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTS 213 (595)
T ss_dssp SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEE
T ss_pred CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEe
Confidence 4567776 3 665 666553 34679999999998888876444567788999 899888887
Q ss_pred CCC--------------------------------------cEEEEeCCC--CeE-EEeccCCCCeEEEEEeeCCCEEEE
Q 006909 329 IDG--------------------------------------KVRIWGVCE--KRV-VDWADVRDVISAICYIPDGKGFIV 367 (626)
Q Consensus 329 ~dg--------------------------------------~v~iwd~~~--~~~-~~~~~~~~~i~~i~~sp~g~~l~~ 367 (626)
.+. .|.+.|.++ +.. ...........++.++|||+++++
T Consensus 214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE
Confidence 553 467777776 333 344444556778999999998887
Q ss_pred Ee-cCCcEEEEEcCCCcee------ee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-------
Q 006909 368 GS-ITGTCHFYKASGNDLK------LE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV------- 432 (626)
Q Consensus 368 g~-~dg~i~i~d~~~~~~~------~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~------- 432 (626)
++ .+.+|.++|+.+.+.. .. .... ....+.....++|+|+| ...++...|++|.+||+...
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~---~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~ 369 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVA---EPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGE 369 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE---CCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTC
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEE---EcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccc
Confidence 66 5789999999854210 00 0000 11123578899999998 77778888999999996541
Q ss_pred -----eeeeeecCCCCCe-----EEEEEcCCCCEEEEEeC---Ccc----------EEEEECCCC
Q 006909 433 -----IHKFKGLPKSGSQ-----MSASFTTTGKHIISIGD---DCR----------VYVWNYDEL 474 (626)
Q Consensus 433 -----~~~~~~~~~~~~v-----~~~~~sp~g~~l~s~s~---dg~----------I~iwd~~~~ 474 (626)
+..+.. |-.+- .++.++|||++|++... |+- -.++|+.++
T Consensus 370 ~~~~vi~kidV--~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 370 KVDPIKDKLDV--HYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp SCCCEEEEEEC--SSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred ccceeEEEeec--ccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 222222 22111 12245799999999763 332 177888654
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.60 E-value=6.4e-07 Score=89.35 Aligned_cols=183 Identities=14% Similarity=0.066 Sum_probs=115.2
Q ss_pred cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCC-eEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE-Ee
Q 006909 269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DW 346 (626)
Q Consensus 269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~-~~ 346 (626)
..+.++...+++.|..++.+ |..+|. +++.+..+..... .....+. +..+..++.++.|..+|.. ++.. ..
T Consensus 60 ~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~ 132 (330)
T 3hxj_A 60 IIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKWRF 132 (330)
T ss_dssp EEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE---TTEEEEECTTSEEEEECTT-SCEEEEE
T ss_pred CcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEEEE
Confidence 44566777777877777665 888886 5655544432222 2223332 4567778888999999988 5443 33
Q ss_pred ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 006909 347 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 426 (626)
Q Consensus 347 ~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i 426 (626)
......+.++...+++. +++++.++.+..||.. +..... .... ...+.++...+++ .+.+++ +.|..
T Consensus 133 ~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~-~~~~------~~~~~~~~~d~~g--~l~v~t--~~l~~ 199 (330)
T 3hxj_A 133 KTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR-FKTN------DAITSAASIGKDG--TIYFGS--DKVYA 199 (330)
T ss_dssp ECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE-EECS------SCCCSCCEECTTC--CEEEES--SSEEE
T ss_pred cCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE-EecC------CCceeeeEEcCCC--EEEEEe--CEEEE
Confidence 33444566667776775 7778888999999988 443222 2221 2456667777776 355555 88999
Q ss_pred EeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 427 wd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
+| .+.............+.++...++|.. ..++.++.|+.++...
T Consensus 200 ~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~~g 244 (330)
T 3hxj_A 200 IN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINPDG 244 (330)
T ss_dssp EC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECTTS
T ss_pred EC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECCCC
Confidence 99 544444444334456778888888765 4456677888887543
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.58 E-value=9.6e-05 Score=83.32 Aligned_cols=239 Identities=10% Similarity=0.155 Sum_probs=156.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909 184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 263 (626)
Q Consensus 184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (626)
|.++...++|.+.+ |+.++-|..|+..+..... ..
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~-------------------------------------------~~- 209 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEK-------------------------------------------VI- 209 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEE-------------------------------------------CC-
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEE-------------------------------------------ec-
Confidence 88898888886555 5555458888876532110 00
Q ss_pred eccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec--------CCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909 264 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRI 335 (626)
Q Consensus 264 ~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~p~~~~~l~s~s~dg~v~i 335 (626)
...+...|.++...+++.|..++.++-|.+||..+++...... ....|.++...+ ++.+.+ |+.+ -|.+
T Consensus 210 ~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~ 286 (795)
T 4a2l_A 210 PILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLWI-GTFN-DLNI 286 (795)
T ss_dssp ----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEEE-EESS-CEEE
T ss_pred CCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEEE-EeCC-hhhe
Confidence 0012456888888888877777766569999988776543321 135699998887 666555 4445 5889
Q ss_pred EeCCCCeEEEecc--------CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE
Q 006909 336 WGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 407 (626)
Q Consensus 336 wd~~~~~~~~~~~--------~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 407 (626)
||..++....... ....|.++...++|. |.+|+.++-|..|+........... ...........|.++..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~-~~~~~~l~~~~V~~i~~ 364 (795)
T 4a2l_A 287 YHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRN-IPYKNSLSDNVVSCIVE 364 (795)
T ss_dssp EETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECC-CTTSSSCSCSSEEEEEE
T ss_pred EcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcC-CCCCCCCCCCeeEEEEE
Confidence 9988877665432 235699999988885 6778888889999876544321110 00011112467999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCcc-eeeeeec-------CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 408 SRDESQRIMITSEDSKLRILDGVDV-IHKFKGL-------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 408 s~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~-------~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.++| .|-+|+.++-|..|+..+. ...+... .....|.++...++|+.|..|+.++-|.+||..++
T Consensus 365 d~~g--~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 365 DKDK--NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG 437 (795)
T ss_dssp CTTS--CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred CCCC--CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence 8886 4667888888999997643 2222211 12357889998889985666777777999998875
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.57 E-value=6.6e-09 Score=105.97 Aligned_cols=182 Identities=8% Similarity=0.024 Sum_probs=100.5
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCC-CCeE-E
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVR-DVIS-A 355 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~-~~i~-~ 355 (626)
++.+++++.|+.|+.||..+|+.+..+.. ..+.+..+.+ ++..+++++.||.|+.||..+++.+. +..+. ..+. +
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 56899999999999999999999988876 5555555555 67778888899999999998776532 22110 0010 0
Q ss_pred EEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceee
Q 006909 356 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK 435 (626)
Q Consensus 356 i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~ 435 (626)
..+. .+..+++++.++.++.||..+++.... .... . ...++|++ ..+++++.++.|+.||..+....
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~-~~~~-------~---~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT-LSSA-------F---ADSLSPST-SLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE-ecCC-------C---cccccccC-CEEEEEecCCEEEEEECCCCCEE
Confidence 1111 345678888999999999998876432 1111 1 13345665 68888999999999997654332
Q ss_pred eeecCCCCCeEEEEEcCCC---CEEEEEeCCccEEEEECCCCCCC
Q 006909 436 FKGLPKSGSQMSASFTTTG---KHIISIGDDCRVYVWNYDELCFP 477 (626)
Q Consensus 436 ~~~~~~~~~v~~~~~sp~g---~~l~s~s~dg~I~iwd~~~~~~~ 477 (626)
...... ......++++. ..+++++.||.|+.||..++...
T Consensus 154 W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 154 WNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp CEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred EeEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence 221100 01122233332 56777888999999999887443
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.54 E-value=1.6e-05 Score=74.80 Aligned_cols=184 Identities=11% Similarity=0.000 Sum_probs=122.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909 184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 263 (626)
Q Consensus 184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (626)
...+.|+ ++.+..+.+.+|.|+++|+.+++.. ..
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~---------------------------------------------~~ 90 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPV---------------------------------------------WM 90 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCS---------------------------------------------EE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEE---------------------------------------------eE
Confidence 4678887 4667778888899999999986442 22
Q ss_pred eccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909 264 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 343 (626)
Q Consensus 264 ~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~ 343 (626)
+......--.+++..+...++.-.++.+.+||..+.+.+.++.....-..++ + ++..|+.+..++.|.++|..+.++
T Consensus 91 ~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~-Dg~~L~vSdGs~~l~~iDp~T~~v 167 (268)
T 3nok_A 91 ERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--Y-WNGKLVRSDGGTMLTFHEPDGFAL 167 (268)
T ss_dssp EECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--E-ETTEEEEECSSSEEEEECTTTCCE
T ss_pred ECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--c-CCCEEEEECCCCEEEEEcCCCCeE
Confidence 1111111123555555555566678999999999999999997554444555 4 677777777788999999998876
Q ss_pred EEeccCC------CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccc-------cccCCCCeEEEEEcCC
Q 006909 344 VDWADVR------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------KKTSGNKITGIQFSRD 410 (626)
Q Consensus 344 ~~~~~~~------~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~i~~l~~s~~ 410 (626)
....... ..++.+.|. +|+..+..-.++.|.+.|..+++... .+.+.+- ........++|+++|+
T Consensus 168 ~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~-~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 168 VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVG-VIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEE-EEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEE-EEECCCCcccccccccCcCCceEEEEEcCC
Confidence 6533221 245667776 77555444468899999998887543 3333311 1122356789999998
Q ss_pred CCcEEEEE
Q 006909 411 ESQRIMIT 418 (626)
Q Consensus 411 ~~~~l~~~ 418 (626)
+..++++|
T Consensus 246 ~~rlfVTG 253 (268)
T 3nok_A 246 SGRIFMTG 253 (268)
T ss_dssp TCCEEEEE
T ss_pred CCEEEEeC
Confidence 76556555
No 244
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.53 E-value=4e-06 Score=92.32 Aligned_cols=153 Identities=9% Similarity=-0.005 Sum_probs=97.1
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEeecCC------CCeEEEEEeeCCCCEEEEEeC------CCcEEEEeCCCCeEEEe
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH------NYVTCVQFNPIDDNYFISGSI------DGKVRIWGVCEKRVVDW 346 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~------~~v~~~~~~p~~~~~l~s~s~------dg~v~iwd~~~~~~~~~ 346 (626)
++.++.++.|+.|..+|..+|+.+..+... ..+.+.-.. .+..++.++. ++.|+.+|..+++++-.
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 468888899999999999999998887633 122221111 2345555543 68999999999886632
Q ss_pred ccC-C--------------------------------CCeEEEEEeeCCCEEEEEecCC-------------------cE
Q 006909 347 ADV-R--------------------------------DVISAICYIPDGKGFIVGSITG-------------------TC 374 (626)
Q Consensus 347 ~~~-~--------------------------------~~i~~i~~sp~g~~l~~g~~dg-------------------~i 374 (626)
... . .....++++|++..+++++.++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 211 0 1113578899999999888764 49
Q ss_pred EEEEcCCCceeeeEEeeccccc---cCCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEeCCccee
Q 006909 375 HFYKASGNDLKLEKVDFHDRKK---TSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVDVIH 434 (626)
Q Consensus 375 ~i~d~~~~~~~~~~~~~~~~~~---~~~~~i~~l~~s~~~~--~~l~~~s~dg~i~iwd~~~~~~ 434 (626)
..+|..+++..... ....+.. .......-+....+|. ..++.++.+|.|+++|..+...
T Consensus 286 ~AlD~~TG~~~W~~-~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~ 349 (677)
T 1kb0_A 286 VALDPDTGKYKWHY-QETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF 349 (677)
T ss_dssp EEECTTTCCEEEEE-ESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred EEEECCCCCEEEEE-ecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 99999988765432 1111100 0011222233334552 4788899999999999765443
No 245
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.53 E-value=6.7e-06 Score=81.81 Aligned_cols=185 Identities=14% Similarity=0.053 Sum_probs=119.6
Q ss_pred ceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe-EEEec
Q 006909 270 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWA 347 (626)
Q Consensus 270 ~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~ 347 (626)
.+.++...+++.++.++.++.|..+|.. ++....+. ....+.++...+ ++.+++ ++ +.|..+| .+++ .....
T Consensus 138 ~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g~~~~~~~ 211 (330)
T 3hxj_A 138 IYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDGTEKWNFY 211 (330)
T ss_dssp CCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTSCEEEEEC
T ss_pred eeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCCcEEEEEc
Confidence 4455566667888888888999999998 77766664 334566677765 666444 44 7899999 5544 44444
Q ss_pred cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909 348 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 427 (626)
Q Consensus 348 ~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw 427 (626)
.....+.++...++| .+.+++.++.+..++..+... ....... ..+..+...+++ .|.+++.++.|..+
T Consensus 212 ~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~~g~~~--~~~~~~~------~~~~~~~~~~~g--~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 212 AGYWTVTRPAISEDG-TIYVTSLDGHLYAINPDGTEK--WRFKTGK------RIESSPVIGNTD--TIYFGSYDGHLYAI 280 (330)
T ss_dssp CSSCCCSCCEECTTS-CEEEEETTTEEEEECTTSCEE--EEEECSS------CCCSCCEECTTS--CEEEECTTCEEEEE
T ss_pred cCCcceeceEECCCC-eEEEEcCCCeEEEECCCCCEe--EEeeCCC------CccccceEcCCC--eEEEecCCCCEEEE
Confidence 445667888888877 566677788888887543322 2222111 223345566565 67888889899999
Q ss_pred eCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 428 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 428 d~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
|.. .............+.++...++|+ |..++.+|.+++...+.
T Consensus 281 d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 281 NPD-GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp CTT-SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CCC-CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 953 222222222345566777777776 55578899999988764
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.51 E-value=2e-05 Score=74.16 Aligned_cols=186 Identities=8% Similarity=0.046 Sum_probs=122.7
Q ss_pred cceEEEEEcCCC-eEEEEeCCC--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE-eCCCcEEEEeCCCCeEE
Q 006909 269 GDVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDGKVRIWGVCEKRVV 344 (626)
Q Consensus 269 ~~V~~l~~s~~~-~l~s~s~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~v~iwd~~~~~~~ 344 (626)
.....+.|+ ++ ++.+.+.+| .|+++|+.+++.+..+..........+.+ .++.|..+ -.++.+.+||..+.+++
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~-~g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD-WKDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE-ETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE-eCCEEEEEEeeCCEEEEEECccCcEE
Confidence 345788998 56 555666665 89999999999999887555554433344 34454444 45789999999998887
Q ss_pred EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 006909 345 DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL 424 (626)
Q Consensus 345 ~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i 424 (626)
........ ...++++++.|+.+..++.|.++|..+.+.... +..... ...-..++.+.|. +| ..++..-.++.|
T Consensus 121 ~ti~~~~e--G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~-I~V~~~-g~~~~~lNELe~~-~G-~lyan~w~~~~I 194 (262)
T 3nol_A 121 RSFNYDGE--GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT-ITVTAH-GEELPELNELEWV-DG-EIFANVWQTNKI 194 (262)
T ss_dssp EEEECSSC--CCCEEECSSCEEECCSSSEEEEECTTTCSEEEE-EECEET-TEECCCEEEEEEE-TT-EEEEEETTSSEE
T ss_pred EEEECCCC--ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEE-EEeccC-CccccccceeEEE-CC-EEEEEEccCCeE
Confidence 65554432 234447888888887788999999988775433 222110 0011345567776 55 555555578899
Q ss_pred EEEeCCcc--eeeeeec----------CCCCCeEEEEEcCCCCEEEEEeC
Q 006909 425 RILDGVDV--IHKFKGL----------PKSGSQMSASFTTTGKHIISIGD 462 (626)
Q Consensus 425 ~iwd~~~~--~~~~~~~----------~~~~~v~~~~~sp~g~~l~s~s~ 462 (626)
.+.|..+. ...+... ......+.++|+|+++.|+..+.
T Consensus 195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99997643 3333321 11245689999999888877765
No 247
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.49 E-value=0.00032 Score=79.00 Aligned_cols=244 Identities=13% Similarity=0.136 Sum_probs=158.7
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 260 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (626)
...|.++...++|.+.+ |+.+| |.+|+..+........ .+
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~--------------------------------------~~ 301 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSS--------------------------------------NP 301 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECC--------------------------------------CT
T ss_pred CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEec--------------------------------------CC
Confidence 35699999998887554 44455 8888876532211000 00
Q ss_pred ceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-------CCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909 261 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDNYFISGSIDGKV 333 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~~p~~~~~l~s~s~dg~v 333 (626)
.....-....|.++...++|.|..|+.++-|..|+..++....... ....|.++...+ ++++ -.|+.++-|
T Consensus 302 ~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~l-WiGt~~~Gl 379 (795)
T 4a2l_A 302 VENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKNL-WIGTNDGGL 379 (795)
T ss_dssp TSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSCE-EEEESSSCE
T ss_pred CCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCCE-EEEECCCCe
Confidence 0000112457999999998988899988889999887654332211 245699998877 6654 457777779
Q ss_pred EEEeCCCCeEEEecc---------CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909 334 RIWGVCEKRVVDWAD---------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 404 (626)
Q Consensus 334 ~iwd~~~~~~~~~~~---------~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~ 404 (626)
..||..++....... ....|.++...++|+.|.+|+.++.+..||..++.... ..... .......|.+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~--~~~~~-~~l~~~~v~~ 456 (795)
T 4a2l_A 380 NLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN--FNQRN-SQLVNENVYA 456 (795)
T ss_dssp EEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE--ECTTT-SCCSCSCEEE
T ss_pred EEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE--eecCC-CCcCCCeeEE
Confidence 999998877655431 23568899988888768888888889999988765422 11100 1123467999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCcceee-eee-----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 405 IQFSRDESQRIMITSEDSKLRILDGVDVIHK-FKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 405 l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~~-----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+...++| . |.+|+. +-+.+||..+.... +.. ......|.++...++|++.+... +-|+.|+..+.
T Consensus 457 i~~d~~g-~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~ 527 (795)
T 4a2l_A 457 ILPDGEG-N-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGL 527 (795)
T ss_dssp EEECSSS-C-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETT
T ss_pred EEECCCC-C-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCC
Confidence 9988886 3 444455 45888986643222 211 11235788999999998776554 56888988765
No 248
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.48 E-value=4.3e-05 Score=71.92 Aligned_cols=187 Identities=9% Similarity=0.011 Sum_probs=124.4
Q ss_pred cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc
Q 006909 269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 348 (626)
Q Consensus 269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 348 (626)
.....+.|+.+.++.+.+.+|.|+++|+.+++.+..+ ...........+..+.+++..-.++.+.+||..+.+++....
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 3457888886447778888899999999999998887 555444432333134555555568899999999988877555
Q ss_pred CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909 349 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 428 (626)
Q Consensus 349 ~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd 428 (626)
....-..+ .++++.|+++..++.|.++|..+.+.... +..... ...-..++.+.|. +| ..++..-.++.|.+.|
T Consensus 134 ~~~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~-I~V~~~-g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vID 207 (268)
T 3nok_A 134 YSGEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGA-VQVKLR-GQPVELINELECA-NG-VIYANIWHSSDVLEID 207 (268)
T ss_dssp CSSCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEE-EECEET-TEECCCEEEEEEE-TT-EEEEEETTCSEEEEEC
T ss_pred CCCceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEE-EEeCCC-CcccccccccEEe-CC-EEEEEECCCCeEEEEe
Confidence 44333333 47788999888899999999988765433 322211 1111345677777 55 5555555788999999
Q ss_pred CCcc--eeeeeec-----------CCCCCeEEEEEcCCCCEEEEEeC
Q 006909 429 GVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHIISIGD 462 (626)
Q Consensus 429 ~~~~--~~~~~~~-----------~~~~~v~~~~~sp~g~~l~s~s~ 462 (626)
..+. ...+... ......+.++++|+++.|+..+.
T Consensus 208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 7643 3333321 12346789999998766665553
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.47 E-value=2.4e-05 Score=73.63 Aligned_cols=195 Identities=13% Similarity=0.112 Sum_probs=123.2
Q ss_pred cccccccccCc--EEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909 173 TSQEIQAHKGC--IWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 248 (626)
Q Consensus 173 ~~~~l~~H~~~--V~~l~fspdg~~Latgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (626)
..+++ .|... ...+.|+ ++.++.+.+.+| .|+++|+.+++....
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~------------------------------ 80 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ------------------------------ 80 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEE------------------------------
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEE------------------------------
Confidence 34444 45443 3778898 677777777766 899999998654321
Q ss_pred cCCccccccCCCceeeccCc-cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE
Q 006909 249 IPDEVFQIEESPLQELHGHK-GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 327 (626)
+.-.. ..--.++...+...++.-.++.+.++|..+.+.+.++.....-..++ + ++..|+..
T Consensus 81 ---------------~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~-dg~~L~~S 142 (262)
T 3nol_A 81 ---------------IELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--H-NDQYLIMS 142 (262)
T ss_dssp ---------------EECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--E-CSSCEEEC
T ss_pred ---------------EecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--c-CCCEEEEE
Confidence 11111 11123444443344455568899999999999999997554334444 4 66666666
Q ss_pred eCCCcEEEEeCCCCeEEEeccC---C---CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc------
Q 006909 328 SIDGKVRIWGVCEKRVVDWADV---R---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK------ 395 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~~~~~---~---~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~------ 395 (626)
..++.|.++|..+.++...... . ..++.+.|. +|+..+..-.++.|.+.|..+++... .+.+.+-.
T Consensus 143 dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~-~Id~~~L~~~~~~~ 220 (262)
T 3nol_A 143 DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTG-IIDLNGILAEAGPL 220 (262)
T ss_dssp CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEE-EEECTTGGGGSCSC
T ss_pred CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEE-EEECCcCccccccc
Confidence 5578899999998776654322 1 335567775 77655555568899999998887643 34433211
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909 396 KTSGNKITGIQFSRDESQRIMITSE 420 (626)
Q Consensus 396 ~~~~~~i~~l~~s~~~~~~l~~~s~ 420 (626)
.......++|+|+|++. .|++++.
T Consensus 221 ~~~~~vlNGIA~dp~~~-~lfVTGK 244 (262)
T 3nol_A 221 PSPIDVLNGIAWDKEHH-RLFVTGK 244 (262)
T ss_dssp CSSCCCEEEEEEETTTT-EEEEEET
T ss_pred cCcCCceEEEEEcCCCC-EEEEECC
Confidence 11235678999999975 4444443
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.47 E-value=0.00024 Score=68.33 Aligned_cols=218 Identities=7% Similarity=-0.069 Sum_probs=132.2
Q ss_pred CcEEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909 182 GCIWTLKFSPDGRYLASG-GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 260 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latg-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (626)
..+..++|+|+++.|..+ ..++.|.+++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--------------------------------------------- 70 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP--------------------------------------------- 70 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---------------------------------------------
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---------------------------------------------
Confidence 357899999976655544 4567899998865211
Q ss_pred ceeeccCccceEEEEEcCC-CeEE-EEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeC---CCcEE
Q 006909 261 LQELHGHKGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI---DGKVR 334 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~-~~l~-s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~---dg~v~ 334 (626)
.............+++.++ +.|+ +-...+.|.++++.......... .......++++| ++..|+.+.. .+.|.
T Consensus 71 ~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~ 149 (267)
T 1npe_A 71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIE 149 (267)
T ss_dssp EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEE
T ss_pred EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEE
Confidence 0111112245788999985 5544 44556789999987543322222 224678999999 6666555553 36888
Q ss_pred EEeCCCCeEEEec-cCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909 335 IWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 335 iwd~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
.+++.......+. ..-.....++++|++..|+++. ..+.|..++..+..... .. .. ......++.. +.
T Consensus 150 ~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~-~~--~~-----~~~P~gi~~d--~~ 219 (267)
T 1npe_A 150 TSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK-VL--EG-----LQYPFAVTSY--GK 219 (267)
T ss_dssp EEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE-EE--EC-----CCSEEEEEEE--TT
T ss_pred EEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE-Ee--cC-----CCCceEEEEe--CC
Confidence 8887654332222 2234678999999877766655 45789999987543211 11 11 1344667664 33
Q ss_pred cEEEEEeCCCcEEEEeCCcceeeeeecCC-CCCeEEEEEcCCCC
Q 006909 413 QRIMITSEDSKLRILDGVDVIHKFKGLPK-SGSQMSASFTTTGK 455 (626)
Q Consensus 413 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~g~ 455 (626)
.++++....+.|.++|..+....-..... ......+++.|++.
T Consensus 220 ~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 220 NLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 45555556789999997654333222212 22467788888764
No 251
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.44 E-value=0.0001 Score=68.80 Aligned_cols=191 Identities=7% Similarity=-0.018 Sum_probs=124.9
Q ss_pred cCc--cceEEEEEcCCCeEEEEeCC--CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909 266 GHK--GDVLDLAWSNSNYLLSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 341 (626)
Q Consensus 266 ~h~--~~V~~l~~s~~~~l~s~s~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~ 341 (626)
.|. .....+.|+++.++.+.+.+ ..|+.+|+.+++.+...............+.++..++..-.++.+.+||..+.
T Consensus 16 phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTT
T ss_pred CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcC
Confidence 454 45679999874455566665 48999999999999988755554444344413444455556889999999998
Q ss_pred eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909 342 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421 (626)
Q Consensus 342 ~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d 421 (626)
+++........-.. +.++++.|+++..++.|.++|..+.+.... +..... ...-..++.+.+. +| ..++..-.+
T Consensus 96 ~~~~ti~~~~~Gwg--lt~dg~~L~vSdgs~~l~~iDp~t~~~~~~-I~V~~~-g~~~~~lNeLe~~-~G-~lyanvw~s 169 (243)
T 3mbr_X 96 TPRARFRYPGEGWA--LTSDDSHLYMSDGTAVIRKLDPDTLQQVGS-IKVTAG-GRPLDNLNELEWV-NG-ELLANVWLT 169 (243)
T ss_dssp EEEEEEECSSCCCE--EEECSSCEEEECSSSEEEEECTTTCCEEEE-EECEET-TEECCCEEEEEEE-TT-EEEEEETTT
T ss_pred cEEEEEeCCCCceE--EeeCCCEEEEECCCCeEEEEeCCCCeEEEE-EEEccC-CcccccceeeEEe-CC-EEEEEECCC
Confidence 88776555443334 447788888888899999999988765433 222211 0011345667766 44 555555568
Q ss_pred CcEEEEeCCcc--eeeeeec-----------CCCCCeEEEEEcCCCCEEEEEeC
Q 006909 422 SKLRILDGVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHIISIGD 462 (626)
Q Consensus 422 g~i~iwd~~~~--~~~~~~~-----------~~~~~v~~~~~sp~g~~l~s~s~ 462 (626)
..|.+.|..+. ...+... ......+.++++|+++.|+..+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 89999997643 3333321 12245689999998877776664
No 252
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.43 E-value=2.5e-05 Score=85.94 Aligned_cols=235 Identities=10% Similarity=0.092 Sum_probs=124.2
Q ss_pred ceEEEEEcCCC-eEEEEe-CCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEe-CC-----CcEEEEeCC
Q 006909 270 DVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGS-ID-----GKVRIWGVC 339 (626)
Q Consensus 270 ~V~~l~~s~~~-~l~s~s-~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s-~d-----g~v~iwd~~ 339 (626)
...++++..++ .++.|+ .+..+.+||..+++....-. ....-.+++..+ ++++++.|+ .+ ..+.+||..
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCC
Confidence 33456666766 666666 45689999998776544322 222223455556 889999988 34 569999998
Q ss_pred CCeEEEecc-----CCCCeEEEEEeeCCCEEEEEecCC---------cEEEEEcCCCceeeeEEeecccc---ccCCCCe
Q 006909 340 EKRVVDWAD-----VRDVISAICYIPDGKGFIVGSITG---------TCHFYKASGNDLKLEKVDFHDRK---KTSGNKI 402 (626)
Q Consensus 340 ~~~~~~~~~-----~~~~i~~i~~sp~g~~l~~g~~dg---------~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~i 402 (626)
+.+-..... ....-....+..+++.++.|+.+| .+..||..+...... ....... ......-
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~-~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS-AGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE-EEECEETTEECCCCBTC
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeec-CCccccccccCCCCCCC
Confidence 876444311 100000011224555566665554 467888876653221 1111000 0001123
Q ss_pred EEEEEcCCCCcEEEEEeCCC-----------cEEEEeCCcceee-ee--ecCCCCCeEEEEEcCCCCEEEEEeCC-----
Q 006909 403 TGIQFSRDESQRIMITSEDS-----------KLRILDGVDVIHK-FK--GLPKSGSQMSASFTTTGKHIISIGDD----- 463 (626)
Q Consensus 403 ~~l~~s~~~~~~l~~~s~dg-----------~i~iwd~~~~~~~-~~--~~~~~~~v~~~~~sp~g~~l~s~s~d----- 463 (626)
.++.|...+.++++.|+.++ .|.+||..+..-. .. .......-.+++..|+++.++.|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 44455443336777777432 6778886543222 21 11111222345667899999999854
Q ss_pred ------ccEEEEECCCCCC---CCCCccCCccceeeeccCCcEEEEecCCCC
Q 006909 464 ------CRVYVWNYDELCF---PSSKQKNSVRSCEHFFSEGVSVAVQWPGIG 506 (626)
Q Consensus 464 ------g~I~iwd~~~~~~---~~~~~~~~~~~~~~~~~~g~~~av~~s~~~ 506 (626)
..+.+||..+..- ........-.++..+.++|.++++.-.+.+
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred CCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 4689999876521 111111111223344567777666654433
No 253
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.40 E-value=0.00022 Score=67.40 Aligned_cols=207 Identities=12% Similarity=0.209 Sum_probs=135.8
Q ss_pred eeccCccceEEEEEcCCC-e-EEEEeCCCcEEEeccCCCeeeEeecC--CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909 263 ELHGHKGDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQCLNVFDH--HNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338 (626)
Q Consensus 263 ~~~~h~~~V~~l~~s~~~-~-l~s~s~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~ 338 (626)
.+.+-...+..++|.|++ . +++...++.|...|.. ++.++.+.. ......|++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 455666789999999864 4 4457778889999998 888877743 35788899987 7776666556778999887
Q ss_pred CCCe---EEEec-------cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCC--ceeeeEEeecc-ccccCCCCeEEE
Q 006909 339 CEKR---VVDWA-------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN--DLKLEKVDFHD-RKKTSGNKITGI 405 (626)
Q Consensus 339 ~~~~---~~~~~-------~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~--~~~~~~~~~~~-~~~~~~~~i~~l 405 (626)
.... ..... ........++|+|.++.|+++.......+|.+.+. ........... .....-..+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 5433 11111 22345689999999988888887766677766521 00111111000 001122467899
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCcc-eeeeeecCC-------CCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909 406 QFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPK-------SGSQMSASFTTTGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~-------~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~ 472 (626)
++.|....+++.......+.++|.... +..+..... -...-.++|.++|+. +..++.+.++++.-.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC-
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEEec
Confidence 999987677777888889999996633 333333211 135689999999984 445777777777543
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.36 E-value=0.00019 Score=70.62 Aligned_cols=198 Identities=11% Similarity=-0.039 Sum_probs=122.1
Q ss_pred cceEEEEEcCCCeEE-EEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCeEEE
Q 006909 269 GDVLDLAWSNSNYLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVD 345 (626)
Q Consensus 269 ~~V~~l~~s~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg--~v~iwd~~~~~~~~ 345 (626)
.....++|++++.|+ +-..++.|..||.... ....+.....+..+++.+ +++++++..... .|..+|..++++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 567889999988554 4447789999998753 444445556789999999 888666554322 47777877777654
Q ss_pred eccC--CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc---ccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909 346 WADV--RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD---RKKTSGNKITGIQFSRDESQRIMITSE 420 (626)
Q Consensus 346 ~~~~--~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~s~~~~~~l~~~s~ 420 (626)
+... ......++..+++..+++-..++.|.++|..+............ ...........+ ++++..++++-..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 3322 22334555555554444444588899998765422111000000 000111244556 7887555666667
Q ss_pred CCcEEEEeCCc-c----eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 421 DSKLRILDGVD-V----IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 421 dg~i~iwd~~~-~----~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
.+.|..++... . ...+.. ......++++++|++.++....+.|.+++...
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G 242 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 242 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred CCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence 78999999652 1 112211 13456789999999877777788999998753
No 255
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.00074 Score=75.88 Aligned_cols=199 Identities=9% Similarity=0.051 Sum_probs=126.0
Q ss_pred cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec--------CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006909 269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 340 (626)
Q Consensus 269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~ 340 (626)
..|.++...+++.|..++.+ -+.+||..+++...... ....|.++...+ ++. |..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK-DNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECT-TSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECC-CCC-EEEEeCCCCeEEECCCC
Confidence 56888888888877777766 58899987765443221 235688988876 554 55566645688899887
Q ss_pred CeEEEecc---------------CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeec--cccccCCCCeE
Q 006909 341 KRVVDWAD---------------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH--DRKKTSGNKIT 403 (626)
Q Consensus 341 ~~~~~~~~---------------~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~i~ 403 (626)
+....... ....|.++...++|. |.+|+.++-|..|+.............. .........|.
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence 66443221 235688999888885 7778888889999877654322111000 01112236799
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCcceee-eee--cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FKG--LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~~--~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
++...++| .|.+|+.++-|..||..+.... +.. ......|.++...++|.+.+ |+.++-|..++..++
T Consensus 367 ~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~ 437 (781)
T 3v9f_A 367 SVCDDGQG--KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK 437 (781)
T ss_dssp EEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC
T ss_pred EEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC
Confidence 99988886 4666776777889987643221 110 11345688888888887655 666677999988765
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.34 E-value=0.00018 Score=67.12 Aligned_cols=190 Identities=12% Similarity=0.085 Sum_probs=120.4
Q ss_pred cccC--cEEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 179 AHKG--CIWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 179 ~H~~--~V~~l~fspdg~~Latgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
.|.. -...+.|++ +.+..+.+.+| .|+++|+.+++.....
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~----------------------------------- 59 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA----------------------------------- 59 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-----------------------------------
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-----------------------------------
Confidence 4543 456889986 56666666654 8999999986543211
Q ss_pred cccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR 334 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~ 334 (626)
.+..+ ..--.++...+......-.++.+.++|..+.+.+.++.....-..++ + ++..|+.+..++.|.
T Consensus 60 --------~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~-dg~~L~vSdgs~~l~ 127 (243)
T 3mbr_X 60 --------EVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--S-DDSHLYMSDGTAVIR 127 (243)
T ss_dssp --------ECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--E-CSSCEEEECSSSEEE
T ss_pred --------eCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--e-CCCEEEEECCCCeEE
Confidence 01111 11123444443345556678999999999999999997655445555 4 566666666688999
Q ss_pred EEeCCCCeEEEeccCC------CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc-------ccCCCC
Q 006909 335 IWGVCEKRVVDWADVR------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-------KTSGNK 401 (626)
Q Consensus 335 iwd~~~~~~~~~~~~~------~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~~ 401 (626)
++|..+.+........ ..++.+.+. +|+..+..-.+..|.+.|..+++... .+.+.+-. ......
T Consensus 128 ~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~-~idl~~l~~~~~~~~~~~~~v 205 (243)
T 3mbr_X 128 KLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVA-WIDLQALVPDADALTDSTNDV 205 (243)
T ss_dssp EECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEE-EEECGGGSTTTTSCCCTTSSC
T ss_pred EEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEE-EEECCcCccccccccCCcCCc
Confidence 9999987766533321 345566664 67655445467899999999887643 34333211 112346
Q ss_pred eEEEEEcCCCCcEEEEE
Q 006909 402 ITGIQFSRDESQRIMIT 418 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~ 418 (626)
.++|+++|++..++++|
T Consensus 206 lNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 206 LNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred eEEEEEcCCCCEEEEEC
Confidence 78999999875555554
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.32 E-value=0.00023 Score=70.56 Aligned_cols=193 Identities=11% Similarity=0.020 Sum_probs=123.5
Q ss_pred cceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--------------------CCCCeEEEEEeeCCCCEEEEE
Q 006909 269 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------------------HHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 269 ~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--------------------~~~~v~~~~~~p~~~~~l~s~ 327 (626)
....+++|.+++ .++++..++.|..||..++....... ....+.++++.+ +...|+.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-CCCcEEEE
Confidence 456678898888 48888889999999987654432110 013578899986 44556666
Q ss_pred eCCCcEEEEeCCCCeEEEecc-----CCCCeEEEEEee-CCCEEEEEec-----------------CCcEEEEEcCCCce
Q 006909 328 SIDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIP-DGKGFIVGSI-----------------TGTCHFYKASGNDL 384 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~~~~-----~~~~i~~i~~sp-~g~~l~~g~~-----------------dg~i~i~d~~~~~~ 384 (626)
...+.|..+|..++....+.. .......+++.+ +|+..++-.. ++.|..||..+...
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 555668889987665433221 113468899999 8976665432 36788888766543
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc----ceeeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909 385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHIISI 460 (626)
Q Consensus 385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~g~~l~s~ 460 (626)
......+ .....++++|+|..++++-...+.|.+|+... ....+.. ..+ ...++++++|++.++.
T Consensus 178 ~~~~~~~--------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 178 TLLLKEL--------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSS 246 (322)
T ss_dssp EEEEEEE--------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEE
T ss_pred EEeccCC--------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEe
Confidence 2211111 34567999999843444556678999999753 1222222 223 7889999999877766
Q ss_pred eC----------CccEEEEECCC
Q 006909 461 GD----------DCRVYVWNYDE 473 (626)
Q Consensus 461 s~----------dg~I~iwd~~~ 473 (626)
.. .+.|..+|...
T Consensus 247 ~~~~~~~~~~~~~~~v~~~d~~G 269 (322)
T 2fp8_A 247 SEELDGNMHGRVDPKGIKFDEFG 269 (322)
T ss_dssp EEETTSSTTSCEEEEEEEECTTS
T ss_pred cCcccccccCCCccEEEEECCCC
Confidence 54 45677777643
No 258
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=0.004 Score=69.88 Aligned_cols=198 Identities=12% Similarity=0.055 Sum_probs=130.0
Q ss_pred ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee----cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909 268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 343 (626)
Q Consensus 268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~ 343 (626)
...|.++...+++.|..|+.++-|..||..++...... .....|.++...+ ++.+. .|+.++-|..+|..+++.
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLW-FGTYLGNISYYNTRLKKF 439 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEE-EEETTEEEEEECSSSCEE
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEE-EEeccCCEEEEcCCCCcE
Confidence 35699999888888888887777999998765433211 1345788988876 66554 467667799999988876
Q ss_pred EEecc---CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909 344 VDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 420 (626)
Q Consensus 344 ~~~~~---~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~ 420 (626)
..... ....|.++...++|. |.+|+. +.+..||..+...... ............|.++...++| .|.+|+.
T Consensus 440 ~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~--~~~~~~~~~~~~i~~i~~d~~g--~lWigt~ 513 (781)
T 3v9f_A 440 QIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHH--YDTSNSQLLENFVRSIAQDSEG--RFWIGTF 513 (781)
T ss_dssp EECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEE--ECTTTSSCSCSCEEEEEECTTC--CEEEEES
T ss_pred EEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEec--ccCcccccccceeEEEEEcCCC--CEEEEEc
Confidence 65532 346788888887775 666666 5688899876554221 1111011123678999998887 4555665
Q ss_pred CCcEEEEeCCcce-eeeeec--CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 421 DSKLRILDGVDVI-HKFKGL--PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 421 dg~i~iwd~~~~~-~~~~~~--~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
++-|..||..... ..+... -....|.++...++|.+.++.. +|.|..||..+.
T Consensus 514 ~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~ 569 (781)
T 3v9f_A 514 GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNF 569 (781)
T ss_dssp SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTC
T ss_pred CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCC
Confidence 4557778865432 222211 1235688999989998766554 676588887765
No 259
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.28 E-value=0.00095 Score=66.92 Aligned_cols=197 Identities=6% Similarity=-0.052 Sum_probs=124.7
Q ss_pred cceEEEEEcCC-CeEE-EEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 006909 269 GDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 345 (626)
Q Consensus 269 ~~V~~l~~s~~-~~l~-s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~ 345 (626)
..+..++|.+. +.|+ +-...+.|..+++........+. .......+++.+.+++++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 45789999964 5554 44567889999988665444333 234567889987455555666667889999987654333
Q ss_pred ec-cCCCCeEEEEEeeCCCEEEEEe-cC-CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 006909 346 WA-DVRDVISAICYIPDGKGFIVGS-IT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 422 (626)
Q Consensus 346 ~~-~~~~~i~~i~~sp~g~~l~~g~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg 422 (626)
+. ..-.....++++|.+..|+... .. +.|..+++.+..... + .. ........++++|++..++++-...+
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~-~~----~~~~~PnGla~d~~~~~lY~aD~~~~ 225 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--I-AD----THLFWPNGLTIDYAGRRMYWVDAKHH 225 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--S-CC----SSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE--E-EE----CCCCCcceEEEeCCCCEEEEEECCCC
Confidence 32 3335678999999666655544 34 678888877643321 1 11 11246789999987655666666678
Q ss_pred cEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 423 KLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 423 ~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.|..+|.... ...+. ........++++ ..+...++-...+.|..++..++
T Consensus 226 ~I~~~~~dG~~~~~~~-~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 226 VIERANLDGSHRKAVI-SQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEEEEETTSCSCEEEE-CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred EEEEEeCCCCceEEEE-eCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence 8999986532 22222 123456677888 34555555556778888885444
No 260
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.26 E-value=0.00053 Score=69.84 Aligned_cols=198 Identities=6% Similarity=-0.055 Sum_probs=125.8
Q ss_pred ccceEEEEEcCC-CeEE-EEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 006909 268 KGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344 (626)
Q Consensus 268 ~~~V~~l~~s~~-~~l~-s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~ 344 (626)
...+..++|.+. +.|+ +-...+.|..+++........+. .......+++.+..++++++-...+.|.+.++......
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 345789999964 5544 44566889999988665444433 23355778888745555566566778999988765433
Q ss_pred Eec-cCCCCeEEEEEeeCCCEEEEEec-C-CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909 345 DWA-DVRDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421 (626)
Q Consensus 345 ~~~-~~~~~i~~i~~sp~g~~l~~g~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d 421 (626)
.+. ..-.....++++|.+..|+.... . +.|..+++.+..... +.... ......|+++|++..++++-+..
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~~~-----~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--IADTH-----LFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EECSS-----CSCEEEEEEEGGGTEEEEEETTT
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE--EEECC-----CCCeeeEEEeCCCCEEEEEECCC
Confidence 332 33356789999997766665543 3 678888877643321 11111 24578999998765566666677
Q ss_pred CcEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 422 SKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 422 g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+.|..+|.... ...+.. .......++++ ..+..+++-...+.|..++..++
T Consensus 268 ~~I~~~d~dG~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 268 HVIERANLDGSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp TEEEEECTTSCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CEEEEEeCCCCeeEEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 88999986532 222221 23446678888 34555556666788888885554
No 261
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=0.00037 Score=72.09 Aligned_cols=242 Identities=12% Similarity=0.097 Sum_probs=137.3
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 183 CIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 183 ~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
....|+++| ++..|..+...+.|+.+|+.+.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~----------------------------------------------v 171 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY----------------------------------------------V 171 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE----------------------------------------------E
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE----------------------------------------------E
Confidence 456789998 45556555544778888876522 2
Q ss_pred eeeccCccceEEEEEcCCC-eEEEEeCC-C----cEEEeccCCCeee--EeecCCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909 262 QELHGHKGDVLDLAWSNSN-YLLSCSMD-K----TVRMWQVGCNQCL--NVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 333 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d-~----~v~iwd~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v 333 (626)
..+.........++|++++ .|+.+... + .+.+.+. .+... ..+........++++|.++.++++-..++.|
T Consensus 172 ~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V 250 (430)
T 3tc9_A 172 STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQV 250 (430)
T ss_dssp EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEE
Confidence 2222234567899999987 46665542 1 2333333 22221 2222233456788998556666665567889
Q ss_pred EEEeCCCCeEEEec--cCCCCeEEEEEeeCCCEEEEE-ecCCcEEEEEcCCCceee---eEEeec-ccc--------ccC
Q 006909 334 RIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKL---EKVDFH-DRK--------KTS 398 (626)
Q Consensus 334 ~iwd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~g-~~dg~i~i~d~~~~~~~~---~~~~~~-~~~--------~~~ 398 (626)
..++..++....+. ........++|+|+|++|+++ ...+.|..++........ ..+.-. +.. ...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~ 330 (430)
T 3tc9_A 251 FRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKAR 330 (430)
T ss_dssp EEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCB
T ss_pred EEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceE
Confidence 99999877653322 223457889999999965555 456789998876431111 111100 000 000
Q ss_pred CCCeE-EEEEc--------CCCCcEEEEEeCCCcEEEEeCCcceeeeeecC----------------CCCCeEEEEEcCC
Q 006909 399 GNKIT-GIQFS--------RDESQRIMITSEDSKLRILDGVDVIHKFKGLP----------------KSGSQMSASFTTT 453 (626)
Q Consensus 399 ~~~i~-~l~~s--------~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~----------------~~~~v~~~~~sp~ 453 (626)
-.... .++.. ++| .++++-...+.|+.++.......+.+.. .-.....++++|+
T Consensus 331 ~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~ 409 (430)
T 3tc9_A 331 MHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEE 409 (430)
T ss_dssp BSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETT
T ss_pred eCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECC
Confidence 12233 45553 334 4555555667888888543333333320 0125789999995
Q ss_pred -CCEEEEEeCCccEEEEECC
Q 006909 454 -GKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 454 -g~~l~s~s~dg~I~iwd~~ 472 (626)
+.++++-...+.|+.++++
T Consensus 410 ~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 410 RECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEEEECCCCeEEEEccC
Confidence 5555555556788887764
No 262
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.23 E-value=0.0006 Score=70.51 Aligned_cols=243 Identities=10% Similarity=0.068 Sum_probs=138.9
Q ss_pred cEEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909 183 CIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 260 (626)
Q Consensus 183 ~V~~l~fspd--g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (626)
....|+|+|+ ...|..+...+.|+.++..++.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~---------------------------------------------- 173 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY---------------------------------------------- 173 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE----------------------------------------------
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE----------------------------------------------
Confidence 3568899985 3344444433788888886532
Q ss_pred ceeeccCccceEEEEEcCCCeEEEEeCCC-----cEEEeccCCCee-eEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909 261 LQELHGHKGDVLDLAWSNSNYLLSCSMDK-----TVRMWQVGCNQC-LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR 334 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~~l~s~s~d~-----~v~iwd~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~ 334 (626)
+..+.........+++++++.|+.+...+ .+...+...+.. ...+........++++|.++.++++-..++.|+
T Consensus 174 v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~ 253 (433)
T 4hw6_A 174 VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMIS 253 (433)
T ss_dssp EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEE
T ss_pred EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEE
Confidence 22222234568899999988555554322 133333322111 012222344567788884555555555678899
Q ss_pred EEeCCCCeE-EEec--cCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCC--Cceee-eEEeec-cc--------cccC
Q 006909 335 IWGVCEKRV-VDWA--DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG--NDLKL-EKVDFH-DR--------KKTS 398 (626)
Q Consensus 335 iwd~~~~~~-~~~~--~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~--~~~~~-~~~~~~-~~--------~~~~ 398 (626)
.+|..++.. ..+. ........++|+|+|++|+++. ..+.|+.++... ..... ..+.-. +. ....
T Consensus 254 ~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~ 333 (433)
T 4hw6_A 254 SYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGAR 333 (433)
T ss_dssp EECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSB
T ss_pred EEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceE
Confidence 999987665 2221 2222345799999999666554 467899888753 22110 011100 00 0011
Q ss_pred CCCeEEEEE---------cCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCC----------------CCCeEEEEEc-C
Q 006909 399 GNKITGIQF---------SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK----------------SGSQMSASFT-T 452 (626)
Q Consensus 399 ~~~i~~l~~---------s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----------------~~~v~~~~~s-p 452 (626)
-.....+++ .++| .++++-...+.|+.++....+..+.+... -.....++++ +
T Consensus 334 ~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~ 412 (433)
T 4hw6_A 334 LWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMK 412 (433)
T ss_dssp CSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETT
T ss_pred EcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECC
Confidence 235678999 6665 56666666789999986443444433211 1246789999 5
Q ss_pred CCCEEEEEeCCccEEEEECC
Q 006909 453 TGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 453 ~g~~l~s~s~dg~I~iwd~~ 472 (626)
+|.++++=...+.|+.++++
T Consensus 413 ~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 413 RKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEecC
Confidence 66666665566788887764
No 263
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.19 E-value=5.5e-05 Score=83.16 Aligned_cols=192 Identities=11% Similarity=0.091 Sum_probs=120.2
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEeecCCCC-----------e-EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY-----------V-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 346 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~-----------v-~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 346 (626)
++.++.++.++.|..+|..+|+.+..+..... + ..+++ .+..++.++.|+.|..+|..+++.+-.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE---ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 56888888899999999999999888753221 0 12233 346788888999999999999887632
Q ss_pred ccCC-----CCeEE-EEEeeCCCEEEEEec------CCcEEEEEcCCCceeeeEEeeccccc------------------
Q 006909 347 ADVR-----DVISA-ICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKK------------------ 396 (626)
Q Consensus 347 ~~~~-----~~i~~-i~~sp~g~~l~~g~~------dg~i~i~d~~~~~~~~~~~~~~~~~~------------------ 396 (626)
.... ..+.+ ..+ .+..++++.. +|.|+.+|..+++.............
T Consensus 143 ~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 2221 11111 111 2345666543 58999999998887554221110000
Q ss_pred ------cCCCCeEEEEEcCCCCcEEEEEeCCC-------------------cEEEEeCCcceeeeee--cCCC-------
Q 006909 397 ------TSGNKITGIQFSRDESQRIMITSEDS-------------------KLRILDGVDVIHKFKG--LPKS------- 442 (626)
Q Consensus 397 ------~~~~~i~~l~~s~~~~~~l~~~s~dg-------------------~i~iwd~~~~~~~~~~--~~~~------- 442 (626)
........+++.|++ .+++.++.++ .|..+|..+....... ..|.
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~ 299 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT 299 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence 011122357888875 5777777665 3889997765554443 2122
Q ss_pred CCeEEEEEcCCCC---EEEEEeCCccEEEEECCCCCC
Q 006909 443 GSQMSASFTTTGK---HIISIGDDCRVYVWNYDELCF 476 (626)
Q Consensus 443 ~~v~~~~~sp~g~---~l~s~s~dg~I~iwd~~~~~~ 476 (626)
.++....+..+|+ .|+.++.+|.++++|..++..
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 2333333444675 688999999999999998844
No 264
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.19 E-value=0.00021 Score=76.93 Aligned_cols=196 Identities=10% Similarity=-0.015 Sum_probs=116.3
Q ss_pred CCeEEEEeC------CCcEEEeccCCCeeeEeecCCCCe---------------------------------------EE
Q 006909 279 SNYLLSCSM------DKTVRMWQVGCNQCLNVFDHHNYV---------------------------------------TC 313 (626)
Q Consensus 279 ~~~l~s~s~------d~~v~iwd~~~~~~~~~~~~~~~v---------------------------------------~~ 313 (626)
++.++.++. ++.|..+|..+|+.+..+...... ..
T Consensus 160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~ 239 (571)
T 2ad6_A 160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW 239 (571)
T ss_dssp TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence 455666554 789999999999988776432211 13
Q ss_pred EEEeeCCCCEEEEEeCC----------------CcEEEEeCCCCeEEEecc---CC-------CCeEEEEEeeCCC---E
Q 006909 314 VQFNPIDDNYFISGSID----------------GKVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---G 364 (626)
Q Consensus 314 ~~~~p~~~~~l~s~s~d----------------g~v~iwd~~~~~~~~~~~---~~-------~~i~~i~~sp~g~---~ 364 (626)
+++.+ ....++.+..+ +.|..+|..+++.+-... +. ....-+...++|+ .
T Consensus 240 ~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred EEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 56666 55666666532 359999999988753221 11 1111223335774 5
Q ss_pred EEEEecCCcEEEEEcCCCceeeeEEeecccc------c-cCCCCe--------------------------EEEEEcCCC
Q 006909 365 FIVGSITGTCHFYKASGNDLKLEKVDFHDRK------K-TSGNKI--------------------------TGIQFSRDE 411 (626)
Q Consensus 365 l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~------~-~~~~~i--------------------------~~l~~s~~~ 411 (626)
+++++.+|.++++|..+++..... .+.... . ....++ ..++++|+.
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~-~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAE-KVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEE-ESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEeCCCcEEEEEECCCCCEEeee-cccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 778899999999999888765432 111100 0 000011 245778875
Q ss_pred CcEEEEEe-------------------------------------CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCC
Q 006909 412 SQRIMITS-------------------------------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG 454 (626)
Q Consensus 412 ~~~l~~~s-------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g 454 (626)
.++++.+ .++.|..||..+.....+.. ....+....+...+
T Consensus 398 -g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~-~~~~~~~~~~~t~g 475 (571)
T 2ad6_A 398 -RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKW-EKFAAWGGTLYTKG 475 (571)
T ss_dssp -TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETT
T ss_pred -CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEec-CCCCccceeEEECC
Confidence 3554442 34788999977654444332 11222222223346
Q ss_pred CEEEEEeCCccEEEEECCCCCCCC
Q 006909 455 KHIISIGDDCRVYVWNYDELCFPS 478 (626)
Q Consensus 455 ~~l~s~s~dg~I~iwd~~~~~~~~ 478 (626)
..++.++.|+.|+.||..++....
T Consensus 476 g~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 476 GLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEE
T ss_pred CEEEEEcCCCeEEEEECCCCCEEE
Confidence 778889999999999999885443
No 265
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.15 E-value=0.0002 Score=78.62 Aligned_cols=195 Identities=11% Similarity=0.092 Sum_probs=121.3
Q ss_pred CCeEEEEeC------CCcEEEeccCCCeeeEeecCC--C------------------------------CeEEEEEeeCC
Q 006909 279 SNYLLSCSM------DKTVRMWQVGCNQCLNVFDHH--N------------------------------YVTCVQFNPID 320 (626)
Q Consensus 279 ~~~l~s~s~------d~~v~iwd~~~~~~~~~~~~~--~------------------------------~v~~~~~~p~~ 320 (626)
++.++.+.. ++.|..+|..+|+.+..+... . ....+++.| .
T Consensus 162 ~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~ 240 (668)
T 1kv9_A 162 KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-E 240 (668)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-T
T ss_pred CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-C
Confidence 455555443 588999999999988877421 0 012467888 7
Q ss_pred CCEEEEEeCCC-------------------cEEEEeCCCCeEEEecc---CC-------CCeEEEEEeeCCC---EEEEE
Q 006909 321 DNYFISGSIDG-------------------KVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---GFIVG 368 (626)
Q Consensus 321 ~~~l~s~s~dg-------------------~v~iwd~~~~~~~~~~~---~~-------~~i~~i~~sp~g~---~l~~g 368 (626)
.+.++.++.++ .|..+|..+++.+-... +. .+.....+..+|+ .++++
T Consensus 241 ~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~ 320 (668)
T 1kv9_A 241 LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQA 320 (668)
T ss_dssp TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEE
Confidence 77888887665 39999999988763222 21 2333334445775 68899
Q ss_pred ecCCcEEEEEcCCCceeeeEEeecc-----ccc-cCCC------------------------CeEEEEEcCCCCcEEEEE
Q 006909 369 SITGTCHFYKASGNDLKLEKVDFHD-----RKK-TSGN------------------------KITGIQFSRDESQRIMIT 418 (626)
Q Consensus 369 ~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~-~~~~------------------------~i~~l~~s~~~~~~l~~~ 418 (626)
+.+|.++++|..+++..... .+.. ... .... .-..++++|+. .++++.
T Consensus 321 ~~~G~l~~lD~~tG~~l~~~-~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~-g~~yv~ 398 (668)
T 1kv9_A 321 PKNGFFYVLDRTNGKLISAE-KFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT-GLVYIP 398 (668)
T ss_dssp CTTSEEEEEETTTCCEEEEE-ESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEE
T ss_pred CCCCEEEEEECCCCCEeccc-cccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC-CEEEEe
Confidence 99999999999988865221 0000 000 0000 01126777775 343331
Q ss_pred ------------------------------------eCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 006909 419 ------------------------------------SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD 462 (626)
Q Consensus 419 ------------------------------------s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~ 462 (626)
..+|.|..||..+.....+... ........+...+.+|+.++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~vf~g~~ 477 (668)
T 1kv9_A 399 YQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTA 477 (668)
T ss_dssp EEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECT
T ss_pred ccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC-CCCCcCceeEeCCCEEEEECC
Confidence 1237899999887665544321 222333344456889999999
Q ss_pred CccEEEEECCCCCCC
Q 006909 463 DCRVYVWNYDELCFP 477 (626)
Q Consensus 463 dg~I~iwd~~~~~~~ 477 (626)
|+.|++||..++...
T Consensus 478 dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 478 AGQMHAYSADKGEAL 492 (668)
T ss_dssp TSEEEEEETTTCCEE
T ss_pred cccchhhhhhcChhh
Confidence 999999999988443
No 266
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.13 E-value=0.0054 Score=60.43 Aligned_cols=199 Identities=12% Similarity=-0.038 Sum_probs=124.0
Q ss_pred ccceEEEEEcCC-CeEE-EEeCCCcEEEeccCC----CeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006909 268 KGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGC----NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 340 (626)
Q Consensus 268 ~~~V~~l~~s~~-~~l~-s~s~d~~v~iwd~~~----~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~ 340 (626)
...+..++|.+. +.|+ +-...+.|..+++.+ ......+. .......+++.+.+++++++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 345788999975 4444 555568899999876 22222232 2245678899873455555656678999999887
Q ss_pred CeEEEecc-CCCCeEEEEEeeCCCEEEEEecC--CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909 341 KRVVDWAD-VRDVISAICYIPDGKGFIVGSIT--GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 417 (626)
Q Consensus 341 ~~~~~~~~-~~~~i~~i~~sp~g~~l~~g~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~ 417 (626)
.....+.. .-.....++++|.+..|+.+... +.|..+++.+..... +... .......+++++++..++++
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--~~~~-----~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE-----NIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EECS-----SCSCEEEEEEETTTTEEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--EEEC-----CCCCceEEEEeccCCEEEEE
Confidence 55443332 34567899999976666655543 688888876543321 1111 12567899999887555566
Q ss_pred EeCCCcEEEEeCCc-ceeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 418 TSEDSKLRILDGVD-VIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 418 ~s~dg~i~iwd~~~-~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
-+..+.|..+|... ....+.. ........++++. .+..+++-...+.|..++..++
T Consensus 182 D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 66678999999752 2233322 1223456778875 3555556566788999987654
No 267
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.11 E-value=0.0002 Score=79.92 Aligned_cols=239 Identities=8% Similarity=0.027 Sum_probs=130.1
Q ss_pred cccC-cEEEEEEc-CCCCEEEEEeC-CC----cEEEEEcCCC-cceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 179 AHKG-CIWTLKFS-PDGRYLASGGE-DG----VVRIWHVTSV-AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 179 ~H~~-~V~~l~fs-pdg~~Latgs~-Dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
+|.- .+...+|| |||++||-+.. +| +|+++|+.++ ...
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l---------------------------------- 215 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI---------------------------------- 215 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC----------------------------------
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC----------------------------------
Confidence 4553 68899999 99998886543 33 4999999874 210
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCC-----CcEEEeccCCCee--eEee--cCCCCeEEEEEeeCC
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD-----KTVRMWQVGCNQC--LNVF--DHHNYVTCVQFNPID 320 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d-----~~v~iwd~~~~~~--~~~~--~~~~~v~~~~~~p~~ 320 (626)
. ..+. .....++|+||+ .|+....+ ..|.++++.+++. ...+ ........+.|+| +
T Consensus 216 -------~---~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-D 281 (751)
T 2xe4_A 216 -------A---DKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-D 281 (751)
T ss_dssp -------C---CCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-T
T ss_pred -------C---cccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-C
Confidence 0 0011 113467899997 66655554 3588888887642 2333 2334567889999 9
Q ss_pred CCEEEEEeC---CCcEEEEeCCCC--eE--EEecc-CCCCeEEEEEeeCCCEEEEEec-C--C--cEEEEEcCCCceeee
Q 006909 321 DNYFISGSI---DGKVRIWGVCEK--RV--VDWAD-VRDVISAICYIPDGKGFIVGSI-T--G--TCHFYKASGNDLKLE 387 (626)
Q Consensus 321 ~~~l~s~s~---dg~v~iwd~~~~--~~--~~~~~-~~~~i~~i~~sp~g~~l~~g~~-d--g--~i~i~d~~~~~~~~~ 387 (626)
+++|+..+. ...|.++|+.++ .. ..+.. ......++.|+. |+.|+..+. + + .|..+++.+... ..
T Consensus 282 g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~ 359 (751)
T 2xe4_A 282 TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD-WS 359 (751)
T ss_dssp SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTC-CC
T ss_pred CCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccc-ce
Confidence 998877653 346888898765 33 33332 234445554433 555555443 3 2 566666654211 11
Q ss_pred E-EeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCc--EEEEeC-------Ccc--eeeeeecCCCCCeEEEEE----c
Q 006909 388 K-VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK--LRILDG-------VDV--IHKFKGLPKSGSQMSASF----T 451 (626)
Q Consensus 388 ~-~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~--i~iwd~-------~~~--~~~~~~~~~~~~v~~~~~----s 451 (626)
. +..+. ....+..+.+. +..++++...++. |.++++ ... ...+... ....+..+.+ +
T Consensus 360 ~~li~~~----~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~-~~~~~~~~~~~~~~~ 432 (751)
T 2xe4_A 360 HVLVDHS----EDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVME-EPIFTVHLVESQMLE 432 (751)
T ss_dssp CEEECCC----SSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCC-CSSCEEEECGGGCCC
T ss_pred eeEECCC----CCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCC-CceeEEEeccCcccC
Confidence 1 11111 01234556655 3357777777775 445564 221 2222211 1122333322 3
Q ss_pred CCCC-EEEEEeCC---ccEEEEECCCC
Q 006909 452 TTGK-HIISIGDD---CRVYVWNYDEL 474 (626)
Q Consensus 452 p~g~-~l~s~s~d---g~I~iwd~~~~ 474 (626)
+++. ++++.+.. ..++.+|+.++
T Consensus 433 ~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 433 YEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp TTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred CCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 4554 44444432 56888888765
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.05 E-value=0.0041 Score=62.24 Aligned_cols=197 Identities=10% Similarity=-0.029 Sum_probs=125.8
Q ss_pred ceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc-
Q 006909 270 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD- 348 (626)
Q Consensus 270 ~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~- 348 (626)
..+|.+..++..|+.+.. ..|+..++..............+..++|++.++.++++-...+.|..+++.++....+..
T Consensus 35 ~~~C~~~~~~~~ll~~~~-~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 35 RRSCKALGPEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SSCEEESSSCCEEEEECB-SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred CCcccccccCceeEeecc-cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 345555556555554443 458888887766655555556689999998344445555567889999988765444322
Q ss_pred CCCCeEEEEEeeCCCEE-EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEE
Q 006909 349 VRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRI 426 (626)
Q Consensus 349 ~~~~i~~i~~sp~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-g~i~i 426 (626)
.......+++.+.+..| ++-...+.|.++++.+..... + ... .......+++.|.+..++.+-... +.|..
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l-~~~----~l~~P~~iavdp~~g~ly~td~~~~~~I~r 186 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--L-LWQ----SLEKPRAIALHPMEGTIYWTDWGNTPRIEA 186 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--E-ECT----TCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--E-EeC----CCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence 22456788998855555 444556789999987654321 1 111 124678999999764555555555 78888
Q ss_pred EeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909 427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 474 (626)
Q Consensus 427 wd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~ 474 (626)
++...................++++|++..|+.+. ..+.|..++++..
T Consensus 187 ~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 187 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp EETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 88653222222222345678999998777766654 4578999998764
No 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.04 E-value=0.0079 Score=61.41 Aligned_cols=200 Identities=12% Similarity=-0.029 Sum_probs=125.3
Q ss_pred CccceEEEEEcCC-CeEE-EEeCCCcEEEeccCCC----eeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909 267 HKGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 339 (626)
Q Consensus 267 h~~~V~~l~~s~~-~~l~-s~s~d~~v~iwd~~~~----~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~ 339 (626)
....+..++|++. +.|+ +-...+.|+.+++... .....+. .......+++.+..++++++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 3457889999974 5554 4445678888888752 2223333 445678899987455566666667889999998
Q ss_pred CCeEEEecc-CCCCeEEEEEeeCCCEEEEEec--CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909 340 EKRVVDWAD-VRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 416 (626)
Q Consensus 340 ~~~~~~~~~-~~~~i~~i~~sp~g~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~ 416 (626)
+.....+.. .-.....|+++|.+..|+.... .+.|...++.+..... +... .......|++++++..+++
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~~~-----~l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE-----NIQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EECS-----SCSCEEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EEEC-----CCCceEEEEEEeCCCEEEE
Confidence 765544333 3455789999997666666553 3688888887654322 1111 1256789999988755555
Q ss_pred EEeCCCcEEEEeCCc-ceeee-eecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 417 ITSEDSKLRILDGVD-VIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 417 ~~s~dg~i~iwd~~~-~~~~~-~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+-...+.|..+|... ....+ ..........++++. .+..+++-...+.|..+|..++
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 556678899999753 22222 221223455677773 3445555556788998986655
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.01 E-value=0.0023 Score=65.12 Aligned_cols=195 Identities=9% Similarity=-0.028 Sum_probs=124.4
Q ss_pred EEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc-CC
Q 006909 272 LDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VR 350 (626)
Q Consensus 272 ~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~ 350 (626)
.|.+..+...|+.+.. ..|+..++..............+..++|++.++.++++-...+.|..+++.++....+.. ..
T Consensus 80 ~C~~~~~~~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 158 (386)
T 3v65_B 80 SCKALGPEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 158 (386)
T ss_dssp CEEECSSCCEEEEECB-SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred eECCccccceeEeecC-ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence 3445455555555443 568888988776655555566789999998344455555567889999998776544332 22
Q ss_pred CCeEEEEEeeCCCEEE-EEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEe
Q 006909 351 DVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILD 428 (626)
Q Consensus 351 ~~i~~i~~sp~g~~l~-~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-g~i~iwd 428 (626)
.....+++.+.+..|+ +-...+.|.++++.+..... +.... ......+++.|.+..++++-... +.|..++
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~--l~~~~-----l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--LLWQS-----LEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE--EECSS-----CSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE--eecCC-----CCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 3456788888655554 44556788888877543221 11111 25678999998765555555455 7888888
Q ss_pred CCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909 429 GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 474 (626)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~ 474 (626)
...................++|+|++..|+.+. ..+.|..++++..
T Consensus 232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 653322222222345678999998777666654 4578999998753
No 271
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.94 E-value=0.0011 Score=71.20 Aligned_cols=197 Identities=9% Similarity=-0.019 Sum_probs=114.7
Q ss_pred CCeEEEEe------CCCcEEEeccCCCeeeEeecCCCCe---------------------------------------EE
Q 006909 279 SNYLLSCS------MDKTVRMWQVGCNQCLNVFDHHNYV---------------------------------------TC 313 (626)
Q Consensus 279 ~~~l~s~s------~d~~v~iwd~~~~~~~~~~~~~~~v---------------------------------------~~ 313 (626)
++.++.++ .++.|+.+|..+|+.+..+....+. ..
T Consensus 166 ~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~ 245 (599)
T 1w6s_A 166 KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGW 245 (599)
T ss_dssp TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSC
T ss_pred CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccc
Confidence 45555554 3789999999999988777532211 13
Q ss_pred EEEeeCCCCEEEEEeCC----------------CcEEEEeCCCCeEEEec---cCCC-------CeEEEEEe-eCC---C
Q 006909 314 VQFNPIDDNYFISGSID----------------GKVRIWGVCEKRVVDWA---DVRD-------VISAICYI-PDG---K 363 (626)
Q Consensus 314 ~~~~p~~~~~l~s~s~d----------------g~v~iwd~~~~~~~~~~---~~~~-------~i~~i~~s-p~g---~ 363 (626)
+++.+ ....++.+..+ +.|..+|..+++.+-.. .+.. ...-+... .+| +
T Consensus 246 ~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~ 324 (599)
T 1w6s_A 246 YAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK 324 (599)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred eeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence 45666 66777777654 37999999998875322 1211 11112222 467 4
Q ss_pred EEEEEecCCcEEEEEcCCCceeeeEEeeccc-----cc-cCCC--------------------------CeEEEEEcCCC
Q 006909 364 GFIVGSITGTCHFYKASGNDLKLEKVDFHDR-----KK-TSGN--------------------------KITGIQFSRDE 411 (626)
Q Consensus 364 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~-~~~~--------------------------~i~~l~~s~~~ 411 (626)
.++.++.+|.++++|..+++........... .. .... .-..++++|+.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 404 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR 404 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence 6777899999999999988765432110000 00 0000 11245566664
Q ss_pred CcEEEEEe---------------------------------------CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcC
Q 006909 412 SQRIMITS---------------------------------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT 452 (626)
Q Consensus 412 ~~~l~~~s---------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 452 (626)
.++++.. ..|.|..||..+.....+.. ...+...-....
T Consensus 405 -~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~t 482 (599)
T 1w6s_A 405 -ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVWGGTMAT 482 (599)
T ss_dssp -TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEE
T ss_pred -CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEec-CCCCccCcceEe
Confidence 3333321 34678888877654444331 111111111223
Q ss_pred CCCEEEEEeCCccEEEEECCCCCCCC
Q 006909 453 TGKHIISIGDDCRVYVWNYDELCFPS 478 (626)
Q Consensus 453 ~g~~l~s~s~dg~I~iwd~~~~~~~~ 478 (626)
.+.+++.++.|+.|+.||..++....
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEE
Confidence 57788889999999999999985443
No 272
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.93 E-value=0.0034 Score=61.83 Aligned_cols=179 Identities=8% Similarity=-0.064 Sum_probs=113.4
Q ss_pred CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC----CeEEEec-cCCCCeEEEEEeeCCC
Q 006909 289 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----KRVVDWA-DVRDVISAICYIPDGK 363 (626)
Q Consensus 289 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~----~~~~~~~-~~~~~i~~i~~sp~g~ 363 (626)
..|+..|+.+......+.....+.+++|++.++.++++-..++.|..+++.+ ....... ..-.....+++.+.+.
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 4688899988776666666667899999983344455555568899999876 2222222 2224567899987555
Q ss_pred EEE-EEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEeCCcceeeeeecCC
Q 006909 364 GFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGLPK 441 (626)
Q Consensus 364 ~l~-~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-g~i~iwd~~~~~~~~~~~~~ 441 (626)
.|+ +-...+.|.++++.+..... ... . .......+++.|.+..++++.... +.|..++.............
T Consensus 90 ~ly~~d~~~~~I~~~~~~g~~~~~-~~~-~-----~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~ 162 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKGVKRKT-LFR-E-----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 162 (316)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEE-EEE-C-----TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred eEEEEECCCCEEEEEeCCCCceEE-EEE-C-----CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECC
Confidence 554 44567899999987654321 111 1 125678999998764444444333 68888886532222112123
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909 442 SGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 474 (626)
Q Consensus 442 ~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~ 474 (626)
-.....++++|++..|+.+. ..+.|..+|++..
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 45788999999877776654 4578999999753
No 273
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.93 E-value=0.00071 Score=75.48 Aligned_cols=193 Identities=13% Similarity=0.080 Sum_probs=108.8
Q ss_pred ceEEEEEc-CCC-eEEE-EeCC----CcEEEeccCCC-eeeEeecCCCCeEEEEEeeCCCCEEEEEeCC-----CcEEEE
Q 006909 270 DVLDLAWS-NSN-YLLS-CSMD----KTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSID-----GKVRIW 336 (626)
Q Consensus 270 ~V~~l~~s-~~~-~l~s-~s~d----~~v~iwd~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-----g~v~iw 336 (626)
.+...+|| ||| +|+. .+.+ .+|+++|+.++ +.+.. ........++|+| +++.|+....+ ..|+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGP-DHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECS-STTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEec-CCCEEEEEEECCCCCCCEEEEE
Confidence 67889999 998 4553 3333 35999999988 63211 0011134678999 98888777665 258888
Q ss_pred eCCCCe----EEEeccCCCCeEEEEEeeCCCEEEEEec---CCcEEEEEcCCCceee--eEEeeccccccCCCCeEEEEE
Q 006909 337 GVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKL--EKVDFHDRKKTSGNKITGIQF 407 (626)
Q Consensus 337 d~~~~~----~~~~~~~~~~i~~i~~sp~g~~l~~g~~---dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~ 407 (626)
++.++. ++...........+.|+|||++|+.... ...|.++|+.+..... ..+. .. ......++.|
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-~~----~~~~~~s~~~ 327 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR-PR----EKGVRYDVQM 327 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS-CC----CTTCCEEEEE
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee-cC----CCCceEEEee
Confidence 887653 2221123344678899999999887663 3467888887652211 1111 11 1244555655
Q ss_pred cCCCCcEEEEEeCC----CcEEEEeCCcc--eee-eeecCCCCCeEEEEEcCCCCEEEEEeCCcc--EEEEEC
Q 006909 408 SRDESQRIMITSED----SKLRILDGVDV--IHK-FKGLPKSGSQMSASFTTTGKHIISIGDDCR--VYVWNY 471 (626)
Q Consensus 408 s~~~~~~l~~~s~d----g~i~iwd~~~~--~~~-~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~--I~iwd~ 471 (626)
+. |..+++.+..+ ..|..+|.... ... +........+..+.+. .+.++++...++. |+++++
T Consensus 328 ~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 328 HG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp ET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred ee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 54 43555555544 35666776532 122 2221111234455554 2334455666664 555664
No 274
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=0.0043 Score=64.47 Aligned_cols=205 Identities=8% Similarity=0.039 Sum_probs=119.1
Q ss_pred cceEEEEE-------cCCC-eEEEEeCCC-------cEEEeccCC-Ceee-----EeecCCCCeEEEEEeeCCCCEEEEE
Q 006909 269 GDVLDLAW-------SNSN-YLLSCSMDK-------TVRMWQVGC-NQCL-----NVFDHHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 269 ~~V~~l~~-------s~~~-~l~s~s~d~-------~v~iwd~~~-~~~~-----~~~~~~~~v~~~~~~p~~~~~l~s~ 327 (626)
.....|+| ++++ .|+.+...+ .|.+.+... +... ..+........++++|.++.++++-
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd 265 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNS 265 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEE
Confidence 45788999 8887 466665543 255564333 2221 1221112345778898555666666
Q ss_pred eCCCcEEEEeCC-------CCeE--------------EEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCcee
Q 006909 328 SIDGKVRIWGVC-------EKRV--------------VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLK 385 (626)
Q Consensus 328 s~dg~v~iwd~~-------~~~~--------------~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~ 385 (626)
..++.|..+|+. ++.. +...........|+|+|+|+.|+++. ....|+.++.......
T Consensus 266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~ 345 (496)
T 3kya_A 266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE 345 (496)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce
Confidence 677889999987 4443 11222334568999999999666554 5678888766543211
Q ss_pred e---eEEeec-ccc--------ccCCCCeE-EEEEc-------CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCC----
Q 006909 386 L---EKVDFH-DRK--------KTSGNKIT-GIQFS-------RDESQRIMITSEDSKLRILDGVDVIHKFKGLPK---- 441 (626)
Q Consensus 386 ~---~~~~~~-~~~--------~~~~~~i~-~l~~s-------~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~---- 441 (626)
. ..+.-. +.. ...-.... .+... ++| .++++-.....|+.++....+.++.+...
T Consensus 346 ~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~ 424 (496)
T 3kya_A 346 FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSL 424 (496)
T ss_dssp ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECTTCBEEEEEESCTTHHH
T ss_pred ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeCCCCEEEEecccccccc
Confidence 1 111110 100 00112344 45554 344 56666667789999985544555544311
Q ss_pred ------------------CCCeEEEEEcCC-CCEEEEEeCCccEEEEECCCC
Q 006909 442 ------------------SGSQMSASFTTT-GKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 442 ------------------~~~v~~~~~sp~-g~~l~s~s~dg~I~iwd~~~~ 474 (626)
-.....++++++ |.++++=.....|+.++++..
T Consensus 425 ~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 425 ADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp HHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred cCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 124678999986 666666666788999998764
No 275
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.90 E-value=0.0099 Score=58.51 Aligned_cols=197 Identities=7% Similarity=-0.050 Sum_probs=125.1
Q ss_pred cceEEEEEcCC-CeE-EEEeCCCcEEEeccCCCeee-Eee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 006909 269 GDVLDLAWSNS-NYL-LSCSMDKTVRMWQVGCNQCL-NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344 (626)
Q Consensus 269 ~~V~~l~~s~~-~~l-~s~s~d~~v~iwd~~~~~~~-~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~ 344 (626)
..+..++|.+. +.| .+-...+.|..+++..+... ..+ ..-.....+++.+..++++++-...+.|.++++.+....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 35678899874 544 45556678999998765321 122 223456788888745556666566788999998765433
Q ss_pred Eec-cCCCCeEEEEEeeCCCEEEEEec--CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909 345 DWA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421 (626)
Q Consensus 345 ~~~-~~~~~i~~i~~sp~g~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d 421 (626)
.+. ........+++.|.+..|+.... .+.|..+++.+..... +.... ......+++++++..++++-+..
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~~~-----l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI--IINSE-----IYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE--EECSS-----CSCEEEEEEETTTTEEEEEETTT
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE--EEECC-----CCCccEEEEeccCCEEEEEECCC
Confidence 332 44456789999997666666653 5788888877543221 11111 24678999999765556666677
Q ss_pred CcEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 422 SKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 422 g~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+.|..+|... ....+. ........++++.. +..+.+-...+.|..++..++
T Consensus 188 ~~I~~~d~dG~~~~~~~-~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVV-KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp TEEEEEETTSCSCEEEE-CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CEEEEEcCCCCceEEEe-cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 8999998752 222222 12345567787753 344555556788999998665
No 276
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.89 E-value=0.002 Score=69.27 Aligned_cols=150 Identities=9% Similarity=-0.032 Sum_probs=90.9
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEeecCCC-----CeEE-EEEeeCCCCEEEEEeC------CCcEEEEeCCCCeEEEe
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTC-VQFNPIDDNYFISGSI------DGKVRIWGVCEKRVVDW 346 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-----~v~~-~~~~p~~~~~l~s~s~------dg~v~iwd~~~~~~~~~ 346 (626)
++.++.++.|+.|..+|..+|+.+..+.... .+.+ ... .+..++.++. ++.|..+|..+++.+-.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 4688888899999999999999987765322 2221 111 2345666654 78999999999886532
Q ss_pred ccCCCC---------------------------------------eEEEEEeeCCCEEEEEecC----------------
Q 006909 347 ADVRDV---------------------------------------ISAICYIPDGKGFIVGSIT---------------- 371 (626)
Q Consensus 347 ~~~~~~---------------------------------------i~~i~~sp~g~~l~~g~~d---------------- 371 (626)
...... ...+++.++...+++++.+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 211110 0235677777777777643
Q ss_pred CcEEEEEcCCCceeeeEEeecccc----ccCCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEeCCcce
Q 006909 372 GTCHFYKASGNDLKLEKVDFHDRK----KTSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVDVI 433 (626)
Q Consensus 372 g~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~s~~~~--~~l~~~s~dg~i~iwd~~~~~ 433 (626)
+.|..+|..+++.... .....+. .....++. +....+|. ..++.++.+|.+.++|..+..
T Consensus 272 ~~v~Ald~~tG~~~W~-~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 337 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWG-YQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp TEEEEEETTTCCEEEE-EESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred EEEEEEecCCCcEEEE-ecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence 3589999998876543 2111100 01112222 22234552 256778889999999976543
No 277
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.87 E-value=0.026 Score=55.68 Aligned_cols=190 Identities=10% Similarity=0.044 Sum_probs=103.1
Q ss_pred ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec----CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909 268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 343 (626)
Q Consensus 268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~ 343 (626)
...+.+|.|.+ +.++.++..+.|.. ..+.++.-.... +...+..+.+.+ ++..++.+ .++.|..- ...++.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCC
Confidence 34678888877 44444555665443 223333333322 334577888776 66655554 45654322 222321
Q ss_pred E--EeccCCCCeEEEEEeeCCCEEEEEecCCcEEE-EEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909 344 V--DWADVRDVISAICYIPDGKGFIVGSITGTCHF-YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 420 (626)
Q Consensus 344 ~--~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~ 420 (626)
- ........+..+.+.|++.+++++. .|.+.. .|-..... ..... .....+..+.+.+++ . +++++.
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW--~~~~~-----~~~~~~~~~~~~~~g-~-~~~~~~ 223 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAW--EPHNR-----TTSRRLHNMGFTPDG-R-LWMIVN 223 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSC--EEEEC-----CSSSCEEEEEECTTS-C-EEEEET
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCce--eECCC-----CCCCccceeEECCCC-C-EEEEeC
Confidence 1 1223455788999999988777664 444433 33211111 11111 123578899999986 3 455667
Q ss_pred CCcEEEEeCCcce--eeeeec--CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 421 DSKLRILDGVDVI--HKFKGL--PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 421 dg~i~iwd~~~~~--~~~~~~--~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+|.+++.+..... ..+... .....+..+.+.+++..++++. ++.| ++..+.+
T Consensus 224 ~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG 279 (327)
T 2xbg_A 224 GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG 279 (327)
T ss_dssp TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT
T ss_pred CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC
Confidence 7888877422111 111111 1234588899998888777665 6766 4455544
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.86 E-value=0.0092 Score=56.29 Aligned_cols=203 Identities=11% Similarity=0.125 Sum_probs=123.4
Q ss_pred cccccccCcEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~La-tgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
+.|.+-.+.+..++|+|++..|+ +...++.|...|.. ++.
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v-------------------------------------- 60 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL-------------------------------------- 60 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE--------------------------------------
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE--------------------------------------
Confidence 45667777899999999877555 46667777777776 322
Q ss_pred ccccCCCceeec-cCccceEEEEEcCCCeE-EEEeCCCcEEEeccCCCee---eEeec-------CCCCeEEEEEeeCCC
Q 006909 254 FQIEESPLQELH-GHKGDVLDLAWSNSNYL-LSCSMDKTVRMWQVGCNQC---LNVFD-------HHNYVTCVQFNPIDD 321 (626)
Q Consensus 254 ~~~~~~~~~~~~-~h~~~V~~l~~s~~~~l-~s~s~d~~v~iwd~~~~~~---~~~~~-------~~~~v~~~~~~p~~~ 321 (626)
+..+. +-....-.|++.+++.+ ++.-.++.+.++++..... +.... .+.....++|+| .+
T Consensus 61 -------~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~ 132 (255)
T 3qqz_A 61 -------IRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QD 132 (255)
T ss_dssp -------EEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TT
T ss_pred -------EEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CC
Confidence 11111 11245677888888744 4544667888888754432 22221 234568999999 77
Q ss_pred CEEEEEeCCCcEEEEeCCC----C--eEEEe-----ccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEE
Q 006909 322 NYFISGSIDGKVRIWGVCE----K--RVVDW-----ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKV 389 (626)
Q Consensus 322 ~~l~s~s~dg~v~iwd~~~----~--~~~~~-----~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~ 389 (626)
+.|+++.......+|.+.. . .+... ......+.+++++|.. ++++.......+..+|..+. ....+
T Consensus 133 ~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~ 210 (255)
T 3qqz_A 133 HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIGEM 210 (255)
T ss_dssp TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEE
T ss_pred CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEE
Confidence 6666666555555555431 1 11110 0123357899999954 55556666778888988765 23333
Q ss_pred eecccc---ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909 390 DFHDRK---KTSGNKITGIQFSRDESQRIMITSEDSKLRILD 428 (626)
Q Consensus 390 ~~~~~~---~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd 428 (626)
.+.... ...-....+|+|.++| + |.+.++.+.++++.
T Consensus 211 ~L~~g~~~l~~~~~qpEGia~d~~G-~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 211 SLTKGSRGLSHNIKQAEGVAMDASG-N-IYIVSEPNRFYRFT 250 (255)
T ss_dssp ECSTTGGGCSSCCCSEEEEEECTTC-C-EEEEETTTEEEEEE
T ss_pred EcCCccCCcccccCCCCeeEECCCC-C-EEEEcCCceEEEEE
Confidence 333211 0112467899999998 4 55557777777765
No 279
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.79 E-value=0.0063 Score=59.22 Aligned_cols=204 Identities=8% Similarity=0.092 Sum_probs=127.3
Q ss_pred cCccceEEEEEcC-CCeEEEEe-CCCcEEEeccCCCeeeEe-ecC-------CCCeEEEEE---eeCCCCEEEEEeC---
Q 006909 266 GHKGDVLDLAWSN-SNYLLSCS-MDKTVRMWQVGCNQCLNV-FDH-------HNYVTCVQF---NPIDDNYFISGSI--- 329 (626)
Q Consensus 266 ~h~~~V~~l~~s~-~~~l~s~s-~d~~v~iwd~~~~~~~~~-~~~-------~~~v~~~~~---~p~~~~~l~s~s~--- 329 (626)
+....--+++|.+ ++.|+.++ ..++|..||...+..... +.. ...+..+.| .| ++.++++...
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~a 88 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKS 88 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccc
Confidence 3344455788987 45666555 789999999986644333 222 114689999 58 6767765432
Q ss_pred ----------CCcEEEEeCC---CCeEEEecc--------------CCCCeEEEEEeeCCCEEEEEecC-CcEEEEEcCC
Q 006909 330 ----------DGKVRIWGVC---EKRVVDWAD--------------VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASG 381 (626)
Q Consensus 330 ----------dg~v~iwd~~---~~~~~~~~~--------------~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~d~~~ 381 (626)
+..|..||+. +++.+.... .......++..++|+..++++.. +.|..++..+
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 5779999998 666543222 11347899999999999999988 8888887766
Q ss_pred CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee-eeeec--C---CCCCeEEE-EEcCCC
Q 006909 382 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGL--P---KSGSQMSA-SFTTTG 454 (626)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-~~~~~--~---~~~~v~~~-~~sp~g 454 (626)
.... .+.............+.|+++|+| ..|++....+.+..+|+..... .+... + .-.....+ ..-.+|
T Consensus 169 ~~~~--~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G 245 (334)
T 2p9w_A 169 KTVS--TFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGN 245 (334)
T ss_dssp CCEE--EEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETT
T ss_pred CEEe--eeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCC
Confidence 5332 121111111222457899999998 5666666699999999875433 12111 1 11223333 333467
Q ss_pred CE-EEEEeCCccEEEEECCC
Q 006909 455 KH-IISIGDDCRVYVWNYDE 473 (626)
Q Consensus 455 ~~-l~s~s~dg~I~iwd~~~ 473 (626)
+. |++.+..+.+.+.+.+.
T Consensus 246 ~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 246 ESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEEEETTEEEEEECSST
T ss_pred EEEEEEcCCCCEEEEECCCC
Confidence 77 55555566666666554
No 280
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.78 E-value=0.0086 Score=64.35 Aligned_cols=58 Identities=12% Similarity=0.000 Sum_probs=36.7
Q ss_pred CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCC
Q 006909 421 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS 479 (626)
Q Consensus 421 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~ 479 (626)
+|.|..||..+.....+.... .++..-.....+.+++.++.|+.++.||..++.....
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~ 522 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK 522 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE
Confidence 578889998765544433211 1221111222467888899999999999999855433
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=0.0014 Score=67.64 Aligned_cols=157 Identities=11% Similarity=0.119 Sum_probs=102.2
Q ss_pred CeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC-C----cEEEEEcCCCce
Q 006909 310 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G----TCHFYKASGNDL 384 (626)
Q Consensus 310 ~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-g----~i~i~d~~~~~~ 384 (626)
....++++|.++..|+.+...+.|+.+|+.++.+..+.........++++++|+.|+++... + .+.+++......
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 45788998611334555554488999999988877766666778999999999977666542 2 344444433221
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee-eeeecCCCCCeEEEEEcCCCCEEEEE-eC
Q 006909 385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISI-GD 462 (626)
Q Consensus 385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~s~-s~ 462 (626)
....+. . ......++++|++..++++-..++.|..++...... .+...........++|+|+|++|+.+ ..
T Consensus 218 ~~~~l~--~-----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 218 VITELT--K-----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp SEEEEE--E-----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred eeeeec--c-----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 111111 1 145677889994336666666788999999764433 23222233567899999999955544 46
Q ss_pred CccEEEEECCC
Q 006909 463 DCRVYVWNYDE 473 (626)
Q Consensus 463 dg~I~iwd~~~ 473 (626)
.+.|+.++.+.
T Consensus 291 ~~~I~~~~~d~ 301 (430)
T 3tc9_A 291 QHYILRSDYDW 301 (430)
T ss_dssp TTEEEEEEEET
T ss_pred CCEEEEEeCCc
Confidence 78899988764
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.73 E-value=0.0097 Score=60.71 Aligned_cols=187 Identities=9% Similarity=-0.042 Sum_probs=118.4
Q ss_pred CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC----eEEEe-ccCCCCeE
Q 006909 280 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK----RVVDW-ADVRDVIS 354 (626)
Q Consensus 280 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~----~~~~~-~~~~~~i~ 354 (626)
.+|+.+. ...|+..++..............+..++|++.++.++++-...+.|+.+++.+. ..... ........
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 3455444 367898999877666666666788999999834444444445678988988752 22222 22345678
Q ss_pred EEEEeeCCCEE-EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEeCCcc
Q 006909 355 AICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGVDV 432 (626)
Q Consensus 355 ~i~~sp~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~-dg~i~iwd~~~~ 432 (626)
.+++.+.+..| ++-...+.|.+.++.+...... +. .. ......|++.|.+..++.+-.. .+.|...++...
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l-~~-~~-----~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-FR-EN-----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE-EE-CS-----SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEE-Ee-CC-----CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence 89999854444 4555678899998876543221 11 11 2467899999976444444323 378888886632
Q ss_pred eeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909 433 IHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 474 (626)
Q Consensus 433 ~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~ 474 (626)
.........-.....+++++++..|+.+. ..+.|..+|++..
T Consensus 236 ~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 236 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 22222222346789999998887777664 4578999998764
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.72 E-value=0.0025 Score=65.86 Aligned_cols=156 Identities=9% Similarity=0.012 Sum_probs=96.6
Q ss_pred cceEEEEEcCC---CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC---C-cEEEEeCCCC
Q 006909 269 GDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---G-KVRIWGVCEK 341 (626)
Q Consensus 269 ~~V~~l~~s~~---~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g-~v~iwd~~~~ 341 (626)
.....++|.|+ +.|+.+...+.|+.+|..++..............+++++ +++++++-... . .+...+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 34678999984 677776665899999998887776666566789999999 88854443321 1 1333333221
Q ss_pred eE-EEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909 342 RV-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 419 (626)
Q Consensus 342 ~~-~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s 419 (626)
.. ......-.....++++| +|..+++-..++.|+.++..++........... ......++|+|++..++++-.
T Consensus 218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-----~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-----KGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-----CSSCEEEEECTTSSEEEEEET
T ss_pred eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-----CCCcccEEEeCCCCEEEEEeC
Confidence 11 01111234456688999 666555555678899998875544122111111 123357999999843555666
Q ss_pred CCCcEEEEeCC
Q 006909 420 EDSKLRILDGV 430 (626)
Q Consensus 420 ~dg~i~iwd~~ 430 (626)
..+.|+.++..
T Consensus 293 ~~~~I~~~~~d 303 (433)
T 4hw6_A 293 GKHCIYRVDYN 303 (433)
T ss_dssp TTTEEEEEEBC
T ss_pred CCCEEEEEeCC
Confidence 67899998743
No 284
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.66 E-value=0.0089 Score=64.25 Aligned_cols=148 Identities=15% Similarity=0.094 Sum_probs=90.1
Q ss_pred EEEEeCCCcEEEeccCCCeeeEeecCCC-----CeEE-EEEeeCCCCEEEEEe------CCCcEEEEeCCCCeEEEeccC
Q 006909 282 LLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTC-VQFNPIDDNYFISGS------IDGKVRIWGVCEKRVVDWADV 349 (626)
Q Consensus 282 l~s~s~d~~v~iwd~~~~~~~~~~~~~~-----~v~~-~~~~p~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~ 349 (626)
++.++.|+.|..+|..+|+.+....... .+.+ ..+. ++ .+++++ .++.|+.+|..+++++-....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 8888899999999999999887764222 2221 1121 34 555554 379999999999886532211
Q ss_pred CCCe---------------------------------------EEEEEeeCCCEEEEEecCC----------------cE
Q 006909 350 RDVI---------------------------------------SAICYIPDGKGFIVGSITG----------------TC 374 (626)
Q Consensus 350 ~~~i---------------------------------------~~i~~sp~g~~l~~g~~dg----------------~i 374 (626)
.... ..+++.+....+++++.++ .|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 1110 1456777778888887653 79
Q ss_pred EEEEcCCCceeeeEEeecccc----ccCCCCeEEEEEc-CCCC--cEEEEEeCCCcEEEEeCCccee
Q 006909 375 HFYKASGNDLKLEKVDFHDRK----KTSGNKITGIQFS-RDES--QRIMITSEDSKLRILDGVDVIH 434 (626)
Q Consensus 375 ~i~d~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~s-~~~~--~~l~~~s~dg~i~iwd~~~~~~ 434 (626)
..+|..+++..... ....+. .....++. +... .+|. ..++.++.+|.+.++|..+...
T Consensus 281 ~Ald~~TG~~~W~~-q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 281 FGRDADTGEAKFGY-QKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp EEEETTTCCEEEEE-ESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred EEEeCCCCceeeEe-ecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence 99999988765432 111110 00111221 2222 3442 3577788999999999765433
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.62 E-value=0.055 Score=60.01 Aligned_cols=200 Identities=12% Similarity=-0.020 Sum_probs=122.1
Q ss_pred cCccceEEEEEcC-CCeE-EEEeCCCcEEEeccCCC----eeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909 266 GHKGDVLDLAWSN-SNYL-LSCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338 (626)
Q Consensus 266 ~h~~~V~~l~~s~-~~~l-~s~s~d~~v~iwd~~~~----~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~ 338 (626)
.....+..|+|.+ ++.| ++-...+.|+.+++... .....+. .......|++.+..++++++-...+.|.+.++
T Consensus 421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 500 (791)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeC
Confidence 3445678899987 4544 45555678888888753 2223333 34566789998834456666666789999999
Q ss_pred CCCeEEEec-cCCCCeEEEEEeeCCCEEEEEec-C-CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 339 CEKRVVDWA-DVRDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 339 ~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~g~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
.+.....+. ..-.....|+++|.+.+|+.... . +.|...++.+..... +... .......|++.+.+..++
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~--lv~~-----~l~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE-----NIQWPNGITLDLLSGRLY 573 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EECS-----SCSCEEEEEEETTTTEEE
T ss_pred CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE--EEeC-----CCCCceEEEEecCCCeEE
Confidence 876654443 23456889999998666666553 2 678888887654322 1111 125688999998764555
Q ss_pred EEEeCCCcEEEEeCCcc-eeee-eecCCCCCeEEEEEcCCCCEEEEE-eCCccEEEEECCCC
Q 006909 416 MITSEDSKLRILDGVDV-IHKF-KGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDEL 474 (626)
Q Consensus 416 ~~~s~dg~i~iwd~~~~-~~~~-~~~~~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd~~~~ 474 (626)
++-...+.|..+++... ...+ ..........++++. +.+|+.+ ...+.|...+..++
T Consensus 574 waD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 574 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred EEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCC
Confidence 55556678999986522 2222 221122345566663 3345444 45678888886655
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.61 E-value=0.016 Score=56.33 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=82.6
Q ss_pred ceEEEEE---cCCCeEEEEeC--------------CCcEEEeccC---CCeeeEeecC--------------CCCeEEEE
Q 006909 270 DVLDLAW---SNSNYLLSCSM--------------DKTVRMWQVG---CNQCLNVFDH--------------HNYVTCVQ 315 (626)
Q Consensus 270 ~V~~l~~---s~~~~l~s~s~--------------d~~v~iwd~~---~~~~~~~~~~--------------~~~v~~~~ 315 (626)
.+..|.| .|++.|+.+.. +..|..+|+. +++.+..... ......++
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva 143 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA 143 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence 3478899 57785554333 5779999999 7877665531 12478999
Q ss_pred EeeCCCCEEEEEeCC-CcEEEEeCCCCeEEEecc------CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC
Q 006909 316 FNPIDDNYFISGSID-GKVRIWGVCEKRVVDWAD------VRDVISAICYIPDGKGFIVGSITGTCHFYKASG 381 (626)
Q Consensus 316 ~~p~~~~~l~s~s~d-g~v~iwd~~~~~~~~~~~------~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~ 381 (626)
..+ +|+..++++.. +.|...+........+.. .....+.|+++|+|+.|++....|.+..+|+..
T Consensus 144 vD~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 144 QDR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp ECT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred ECC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 999 99999999988 888888887664443321 122367999999999999987799999999884
No 287
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.58 E-value=0.033 Score=54.65 Aligned_cols=184 Identities=11% Similarity=0.179 Sum_probs=117.1
Q ss_pred eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeC---CCC---EEEEEeC---CCcEEEEeC--CCCeEEEecc-
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI---DDN---YFISGSI---DGKVRIWGV--CEKRVVDWAD- 348 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~---~~~---~l~s~s~---dg~v~iwd~--~~~~~~~~~~- 348 (626)
.++.....+-+.+||+ +|+.+..+.. ..++.+..-|. .+. ++++... +++|.+|++ .++.+.....
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~ 119 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP 119 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence 6777777788999999 7888887754 56777777660 121 2233333 578999966 4555444422
Q ss_pred -----CC-CCeEEEEE--eeC-CC-EEEEEecCCcEEEEEcCC---CceeeeEE-eeccccccCCCCeEEEEEcCCCCcE
Q 006909 349 -----VR-DVISAICY--IPD-GK-GFIVGSITGTCHFYKASG---NDLKLEKV-DFHDRKKTSGNKITGIQFSRDESQR 414 (626)
Q Consensus 349 -----~~-~~i~~i~~--sp~-g~-~l~~g~~dg~i~i~d~~~---~~~~~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~ 414 (626)
.. ..+..+|+ +|. ++ ++++...+|.+..|++.. +....+.+ .+.- ...+..+...+.. ..
T Consensus 120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-----gsq~EgcvvDd~~-g~ 193 (355)
T 3amr_A 120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-----NSQTEGMAADDEY-GR 193 (355)
T ss_dssp TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-----SSCEEEEEEETTT-TE
T ss_pred ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-----CCCcceEEEcCCC-Ce
Confidence 11 55677887 664 43 688888899999999843 22222211 1111 2578888888875 58
Q ss_pred EEEEeCCCcEEEEeCC--c--ceeeeee---cCCCCCeEEEEE--cCCCC-EEEEEe-CCccEEEEECC
Q 006909 415 IMITSEDSKLRILDGV--D--VIHKFKG---LPKSGSQMSASF--TTTGK-HIISIG-DDCRVYVWNYD 472 (626)
Q Consensus 415 l~~~s~dg~i~iwd~~--~--~~~~~~~---~~~~~~v~~~~~--sp~g~-~l~s~s-~dg~I~iwd~~ 472 (626)
|+++-++.-|..++.. . ....+.. ..-...+..+++ .++++ ||++++ .+++..+||..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999998778778744 1 1112221 112246788877 56666 666666 56799999986
No 288
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.56 E-value=0.056 Score=53.30 Aligned_cols=192 Identities=8% Similarity=0.055 Sum_probs=102.7
Q ss_pred cceEEEEEcCCCeEEEEeCCCcEE-EeccCCCeeeEee--cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC--CCCeE
Q 006909 269 GDVLDLAWSNSNYLLSCSMDKTVR-MWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV--CEKRV 343 (626)
Q Consensus 269 ~~V~~l~~s~~~~l~s~s~d~~v~-iwd~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~--~~~~~ 343 (626)
..+..+.+.+++.++.++.++.|. -.| .++.-... .....+..+.+.| ++.+++.+...+..+-.|- .+-+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCceeE
Confidence 346677777667555555566543 233 23222222 3455788999998 7777766654333333443 12122
Q ss_pred EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 006909 344 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 423 (626)
Q Consensus 344 ~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~ 423 (626)
+. ......+..+.+.++++.+ +++.+|.+++.+...+.. ....... .......+..+.+.+++ ..++ ++.++.
T Consensus 199 ~~-~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t-W~~~~~~--~~~~~~~~~~v~~~~~~-~~~~-~g~~g~ 271 (327)
T 2xbg_A 199 HN-RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN-WGELLSP--LRRNSVGFLDLAYRTPN-EVWL-AGGAGA 271 (327)
T ss_dssp EE-CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE-ECCCBCT--TSSCCSCEEEEEESSSS-CEEE-EESTTC
T ss_pred CC-CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe-eEeccCC--cccCCcceEEEEecCCC-EEEE-EeCCCe
Confidence 22 2345678889999988655 555678777664221111 1111110 00112458899998875 4444 445676
Q ss_pred EEEE-eCCcceeeee-ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909 424 LRIL-DGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 424 i~iw-d~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~ 471 (626)
|..- |....-.... .......+..+.|.++++ +++++.+|.|.-++-
T Consensus 272 i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 272 LLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EEEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EEEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 6332 2222112221 111235678888875554 666677898776653
No 289
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.53 E-value=0.00082 Score=73.78 Aligned_cols=230 Identities=9% Similarity=0.004 Sum_probs=121.7
Q ss_pred CcEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909 182 GCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 260 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (626)
....++++.++|++++.||. +..+.+||..+.....
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~------------------------------------------- 279 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIP------------------------------------------- 279 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEE-------------------------------------------
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeE-------------------------------------------
Confidence 33445778899999999984 4579999987632211
Q ss_pred ceeeccCccceEEEEEcCCC-eEEEEe-CC-----CcEEEeccCCCeeeEee-----cCCCCeEEEEEeeCCCCEEEEEe
Q 006909 261 LQELHGHKGDVLDLAWSNSN-YLLSCS-MD-----KTVRMWQVGCNQCLNVF-----DHHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s-~d-----~~v~iwd~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~s~s 328 (626)
+..+...... .+++..+++ .++.|+ .+ ..+.+||..+++....- .....-....+.. ++..++.|+
T Consensus 280 ~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg 357 (656)
T 1k3i_A 280 GPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGW 357 (656)
T ss_dssp CCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEEC
T ss_pred CCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec-CCceEEEEC
Confidence 0011111111 233445555 666666 34 56999999877654431 0000000011112 455555555
Q ss_pred CCC---------cEEEEeCCCCeEEEeccC----------CCCeEEEEEee-CCCEEEEEecCC-----------cEEEE
Q 006909 329 IDG---------KVRIWGVCEKRVVDWADV----------RDVISAICYIP-DGKGFIVGSITG-----------TCHFY 377 (626)
Q Consensus 329 ~dg---------~v~iwd~~~~~~~~~~~~----------~~~i~~i~~sp-~g~~l~~g~~dg-----------~i~i~ 377 (626)
.+| .+..||..+..-...... ...-.++.|.. +++.+++|+.++ .+.+|
T Consensus 358 ~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~y 437 (656)
T 1k3i_A 358 KKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLG 437 (656)
T ss_dssp GGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECC
T ss_pred CCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcC
Confidence 443 467888876553321111 11234444543 677788887543 57777
Q ss_pred EcCCCceeeeE-EeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-----------CcEEEEeCCcceeeeee--cCCCC
Q 006909 378 KASGNDLKLEK-VDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----------SKLRILDGVDVIHKFKG--LPKSG 443 (626)
Q Consensus 378 d~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~--~~~~~ 443 (626)
|..+....... -.+.. ...-.++...|++ ++++.|+.+ ..+.+||..+..-.... .....
T Consensus 438 d~~~~~W~~~~~~~mp~-----~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~ 511 (656)
T 1k3i_A 438 EPGTSPNTVFASNGLYF-----ARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRV 511 (656)
T ss_dssp STTSCCEEEECTTCCSS-----CCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCC
T ss_pred CCCCCCeeEEccCCCCC-----CcccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccc
Confidence 77665432111 01111 1122345567787 677777654 56899997643322111 11222
Q ss_pred CeEEEEEcCCCCEEEEEeC
Q 006909 444 SQMSASFTTTGKHIISIGD 462 (626)
Q Consensus 444 ~v~~~~~sp~g~~l~s~s~ 462 (626)
....+.+.|+|+.++.|+.
T Consensus 512 ~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 512 YHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp TTEEEEECTTSCEEEEECC
T ss_pred cccHhhcCCCcEEEecCCC
Confidence 3344566799999999985
No 290
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.47 E-value=0.064 Score=57.97 Aligned_cols=199 Identities=7% Similarity=-0.085 Sum_probs=116.8
Q ss_pred ccceEEEEEcCC-CeEEEE-eCCCcEEEeccCCCee-eEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909 268 KGDVLDLAWSNS-NYLLSC-SMDKTVRMWQVGCNQC-LNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 343 (626)
Q Consensus 268 ~~~V~~l~~s~~-~~l~s~-s~d~~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~ 343 (626)
-..+..++|++. +.|+.+ ...+.|..+++..... ...+. .-.....+++.+..++++++-...+.|.+.++.+...
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 345778999874 555544 4467788888875532 22232 2257889999984445555555678999999987654
Q ss_pred EEec-cCCCCeEEEEEeeCCCEEEEEec--CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909 344 VDWA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 420 (626)
Q Consensus 344 ~~~~-~~~~~i~~i~~sp~g~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~ 420 (626)
..+. ..-.....|++.|.+..|+.... .+.|...++.+...... ... ......+|++++++..++++-..
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l--~~~-----~~~~P~Glald~~~~~LY~aD~~ 191 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII--INS-----EIYWPNGLTLDYEEQKLYWADAK 191 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--ECS-----SCSSEEEEEEETTTTEEEEEETT
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE--EeC-----CCCCCcEEEEEccCCEEEEEeCC
Confidence 3332 33455778999997666666553 35677777765433211 111 12567899999976555566566
Q ss_pred CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 421 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 421 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.+.|..+|..................++++..+ ...++-...+.|...|..++
T Consensus 192 ~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp TCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 788999886532211111111223346676554 33334345678888888665
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.41 E-value=0.032 Score=54.81 Aligned_cols=184 Identities=10% Similarity=-0.038 Sum_probs=112.9
Q ss_pred eEEEEeCCCcEEEeccCCCe--eeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE--EEeccCCCCeEEE
Q 006909 281 YLLSCSMDKTVRMWQVGCNQ--CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV--VDWADVRDVISAI 356 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~i~~i 356 (626)
+|+.+. ...|+..++.... ....+.....+.+++|++.++.++.+-...+.|..+++.++.. ......-.....+
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 344333 3578888887653 2222233345678999984455555555667899999876532 1122222456678
Q ss_pred EEeeCCCEE-EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe--CCCcEEEEeCCc-c
Q 006909 357 CYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS--EDSKLRILDGVD-V 432 (626)
Q Consensus 357 ~~sp~g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s--~dg~i~iwd~~~-~ 432 (626)
++.+.+..| ++-...+.|.++++.+..... +... .......+++.|.+. .|+.+. ..+.|...+... .
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l~~~-----~~~~P~giavdp~~g-~ly~td~~~~~~I~r~~~dG~~ 156 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKV--LFWQ-----ELDQPRAIALDPSSG-FMYWTDWGEVPKIERAGMDGSS 156 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECS-----SCSSEEEEEEEGGGT-EEEEEECSSSCEEEEEETTSCS
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEE--EEeC-----CCCCccEEEEeCCCC-EEEEEecCCCCEEEEEEcCCCC
Confidence 888755444 444566789999987654321 1111 125678999998753 444444 357888888653 2
Q ss_pred eeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909 433 IHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 474 (626)
Q Consensus 433 ~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~ 474 (626)
...+. ...-.....++++|++..|+.+. ..+.|..++++..
T Consensus 157 ~~~~~-~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~ 198 (318)
T 3sov_A 157 RFIII-NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 198 (318)
T ss_dssp CEEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred eEEEE-ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence 22221 12345678999999777766654 4678999998753
No 292
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.38 E-value=0.062 Score=53.58 Aligned_cols=226 Identities=15% Similarity=0.127 Sum_probs=117.8
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
..-+.|+|.|+|+++++ ..+|.|++++ ++...... ..+
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~--------------------------------------~~~- 68 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYA--------------------------------------ELS- 68 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEE--------------------------------------ECC-
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEee--------------------------------------cce-
Confidence 35779999999996665 5669898888 32211000 000
Q ss_pred eeeccCccceEEEEEcCC----CeEEEEeC-C-----CcEEEeccCCCe-----ee-EeecC----CCCeEEEEEeeCCC
Q 006909 262 QELHGHKGDVLDLAWSNS----NYLLSCSM-D-----KTVRMWQVGCNQ-----CL-NVFDH----HNYVTCVQFNPIDD 321 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~----~~l~s~s~-d-----~~v~iwd~~~~~-----~~-~~~~~----~~~v~~~~~~p~~~ 321 (626)
.+.........|+++|+ +.|+.+.. . ..|..++...+. .+ ..+.. ......++|.| ++
T Consensus 69 -v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG 146 (352)
T 2ism_A 69 -VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DG 146 (352)
T ss_dssp -CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TS
T ss_pred -EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CC
Confidence 11112346788999997 55544433 2 567778776432 11 11221 12346899999 88
Q ss_pred CEEEEEeC-------------CCcEEEEeCCCC-------------e-EEEeccCCCCeEEEEEee-CCCEEEEEecCCc
Q 006909 322 NYFISGSI-------------DGKVRIWGVCEK-------------R-VVDWADVRDVISAICYIP-DGKGFIVGSITGT 373 (626)
Q Consensus 322 ~~l~s~s~-------------dg~v~iwd~~~~-------------~-~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~ 373 (626)
.++++.+. .|.|.-++.... . .+...++ .....++|+| +|..+++-.....
T Consensus 147 ~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~ 225 (352)
T 2ism_A 147 MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSG 225 (352)
T ss_dssp CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC--
T ss_pred CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCC
Confidence 77766432 145666665431 0 0111112 2356788999 5654444332222
Q ss_pred E------EEEEcCCCce---------------eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc
Q 006909 374 C------HFYKASGNDL---------------KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 432 (626)
Q Consensus 374 i------~i~d~~~~~~---------------~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~ 432 (626)
+ .+.-+..+.. ....... .+......++|. +| .++++....+.|...+....
T Consensus 226 ~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-----~~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 226 EQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-----PQGFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGE 298 (352)
T ss_dssp ----CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-----TTCCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEE
T ss_pred CCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-----CCCCCCcceEEE-CC-EEEEEECCCCEEEEEEECCC
Confidence 1 1222222110 0000000 112356778884 44 56666666677877765421
Q ss_pred --------eeeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 006909 433 --------IHKFKGLPKSGSQMSASFTTTGKHIISIG 461 (626)
Q Consensus 433 --------~~~~~~~~~~~~v~~~~~sp~g~~l~s~s 461 (626)
...+. .....+..+++.|||.+.++..
T Consensus 299 ~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 299 RGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEEC
T ss_pred Ccceeecchheec--ccCCCeeEEEECCCCcEEEEEe
Confidence 11121 1345788999999998776654
No 293
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.37 E-value=0.039 Score=54.17 Aligned_cols=141 Identities=13% Similarity=0.159 Sum_probs=90.1
Q ss_pred CCcEEEecc--CCCeeeEeecC-------C-CCeEEEEE--eeCCCC-EEEEEeCCCcEEEEeCC-------CCeEEEec
Q 006909 288 DKTVRMWQV--GCNQCLNVFDH-------H-NYVTCVQF--NPIDDN-YFISGSIDGKVRIWGVC-------EKRVVDWA 347 (626)
Q Consensus 288 d~~v~iwd~--~~~~~~~~~~~-------~-~~v~~~~~--~p~~~~-~l~s~s~dg~v~iwd~~-------~~~~~~~~ 347 (626)
+++|.+|++ .++. +..+.. . ..+..+++ +|..+. ++++...+|.+..|++. +.+++...
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 578999976 3443 444421 1 45666777 663444 67778888999999882 33556666
Q ss_pred cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee-eeEEeeccccccCCCCeEEEEE--cCCCCcEEEEEe-CCCc
Q 006909 348 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQF--SRDESQRIMITS-EDSK 423 (626)
Q Consensus 348 ~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~--s~~~~~~l~~~s-~dg~ 423 (626)
.....+..+.+.+....|+++-.+..|..|+....... ...+.... .......+..|++ .+++..+|++++ .+++
T Consensus 177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 67788999999998899999999977777775422210 11111111 1111246888888 455533566665 5679
Q ss_pred EEEEeCC
Q 006909 424 LRILDGV 430 (626)
Q Consensus 424 i~iwd~~ 430 (626)
..+||..
T Consensus 256 ~~Vydr~ 262 (355)
T 3amr_A 256 YAIYDRQ 262 (355)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 9999975
No 294
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.35 E-value=0.038 Score=61.30 Aligned_cols=187 Identities=9% Similarity=-0.047 Sum_probs=118.1
Q ss_pred CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC----eEEE-eccCCCCeE
Q 006909 280 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK----RVVD-WADVRDVIS 354 (626)
Q Consensus 280 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~----~~~~-~~~~~~~i~ 354 (626)
.+|+.+. ...|+..++..............+..++|.+.++.++++-...+.|+.+++... .... ....-....
T Consensus 396 p~Ll~an-~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 396 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp CEEEEEC-BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccccc-ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 3444433 356888888877666666666778899999844445555555678988888753 1222 222345567
Q ss_pred EEEEeeCCCEEEE-EecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEeCCcc
Q 006909 355 AICYIPDGKGFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDV 432 (626)
Q Consensus 355 ~i~~sp~g~~l~~-g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-g~i~iwd~~~~ 432 (626)
.|++.+.+..|+. -...+.|.+.++.+..... +.... ......|++.|.++.++++-... +.|.+.++...
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~--l~~~~-----l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--LFREN-----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 547 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEE--EEECT-----TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEE--EEeCC-----CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence 8999987755554 4556899999988654322 11111 24688999999754444443333 68888887643
Q ss_pred eeeeeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909 433 IHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 474 (626)
Q Consensus 433 ~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~ 474 (626)
...............|++++.+..|+.+. ..+.|...+++..
T Consensus 548 ~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 548 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 33222222446789999998777777664 4568999998765
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.34 E-value=0.0012 Score=72.77 Aligned_cols=198 Identities=12% Similarity=-0.027 Sum_probs=117.2
Q ss_pred cceEEEEEcCC-CeEEEE-eCCCcEEEeccCC----CeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909 269 GDVLDLAWSNS-NYLLSC-SMDKTVRMWQVGC----NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 341 (626)
Q Consensus 269 ~~V~~l~~s~~-~~l~s~-s~d~~v~iwd~~~----~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~ 341 (626)
..+..|+|.+. +.|+.+ ...+.|+.+++.+ ......+. .......|++.+..++++++-...+.|.++++.+.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 45668889874 455544 4557899888875 22222221 12235678887635556665556788999998876
Q ss_pred eEEEeccC-CCCeEEEEEeeCCCEEEEEec-C-CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909 342 RVVDWADV-RDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 418 (626)
Q Consensus 342 ~~~~~~~~-~~~i~~i~~sp~g~~l~~g~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~ 418 (626)
....+... ......|+++|.+.+|+.+.. . +.|..+++.+..... +. .. .......|+|+|++..++++-
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~-~~----~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LV-TE----NIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ES-CS----SCSSCCCEEECTTTCCEEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EE-eC----CCCCccEEEEeccCCEEEEEe
Confidence 65544332 345678899997665555443 2 678777776543211 11 11 124567899999875666666
Q ss_pred eCCCcEEEEeCCcc-eeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 419 SEDSKLRILDGVDV-IHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 419 s~dg~i~iwd~~~~-~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+..+.|.+++.... ...+.. ........++++..+ .++++....+.|..++..++
T Consensus 559 ~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 559 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 77789999997532 222221 112233445566443 34445556688999987655
No 296
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.30 E-value=0.14 Score=49.44 Aligned_cols=238 Identities=12% Similarity=0.157 Sum_probs=147.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeecc
Q 006909 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHG 266 (626)
Q Consensus 187 l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (626)
.-.+|..+.||--. ..++.|+|+++. ..++.+.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK---------------------------------------------~klks~~- 104 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMK---------------------------------------------SKMKAHT- 104 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTT---------------------------------------------EEEEEEE-
T ss_pred eeeCCCccEEEEec-CCeEEEechHHh---------------------------------------------hhhccee-
Confidence 34578777777665 578999999872 2222222
Q ss_pred CccceEEEEEcCCCeEEEEeCCCcEEEeccCC-CeeeEeec-----CCCCeEEEEEeeCCCCEEEEEeC-------CCcE
Q 006909 267 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSI-------DGKV 333 (626)
Q Consensus 267 h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s~s~-------dg~v 333 (626)
....|.-=.|-.+..|+-.+. ..|.-|++.. ..+.+.|. ....|..-..++ +.+.++..+. .|.+
T Consensus 105 ~~e~VvfWkWis~~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~m 182 (365)
T 2xzh_A 105 MTDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAM 182 (365)
T ss_dssp CSSCEEEEEECSSSEEEEEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEE
T ss_pred cCCccEEEEecCCCeEEEEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECC-CCCEEEEEeEeccCCccceeE
Confidence 245777777777665555443 4699999974 45666664 234566667777 7776654432 3678
Q ss_pred EEEeCCCCeEEEeccCCCCeEEEEEee--C-CCEEEEEec---CCcEEEEEcCCC---ceee--eEEeeccccccCCCCe
Q 006909 334 RIWGVCEKRVVDWADVRDVISAICYIP--D-GKGFIVGSI---TGTCHFYKASGN---DLKL--EKVDFHDRKKTSGNKI 402 (626)
Q Consensus 334 ~iwd~~~~~~~~~~~~~~~i~~i~~sp--~-g~~l~~g~~---dg~i~i~d~~~~---~~~~--~~~~~~~~~~~~~~~i 402 (626)
.+|..+.+....+.+|......+.+.- . .+.++.+.. .+.+++.++... .... ......-......+-.
T Consensus 183 QLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFP 262 (365)
T 2xzh_A 183 QLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 262 (365)
T ss_dssp EEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCE
T ss_pred EEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCce
Confidence 899998877776666654433222211 1 113333332 258899988443 1111 1222221122334566
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 403 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.++..++.. ..+..-+.-|.|++||+.+....+...-....|...+-+....-++.....|.|.--.++..
T Consensus 263 Vamqvs~ky-gviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 263 VAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EEEEecccC-CEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 788888875 58899999999999999988888877656667765555545445555567777776666653
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.29 E-value=0.29 Score=52.88 Aligned_cols=191 Identities=5% Similarity=-0.092 Sum_probs=101.2
Q ss_pred CcEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCcceeeeecCCC-C--CccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 182 GCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDG-G--FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 182 ~~V~~l~fspdg~~La-tgs~Dg~i~iwd~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
..+..|+|++.+..|. +-..++.|..+++.............. . .......+.+.+.......+.+.. ..
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~------~d 110 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSK------LD 110 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE------TT
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEe------cC
Confidence 4578999998666554 545678888888875433222211101 1 111112233333222222221111 12
Q ss_pred CCCceeec-cCccceEEEEEcC-CCeEEEEeC--CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE-eCCCc
Q 006909 258 ESPLQELH-GHKGDVLDLAWSN-SNYLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDGK 332 (626)
Q Consensus 258 ~~~~~~~~-~h~~~V~~l~~s~-~~~l~s~s~--d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~ 332 (626)
+.....+. ..-.....|++.| .|.|+.+.. .+.|...++...........-.....+++++ +++.|+.+ ...+.
T Consensus 111 G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~-~~~~LY~aD~~~~~ 189 (628)
T 4a0p_A 111 GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDY-AKRRLYWTDLDTNL 189 (628)
T ss_dssp STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEET-TTTEEEEEETTTTE
T ss_pred CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEcc-ccCEEEEEECCCCE
Confidence 22222332 3335678999998 466665542 4677777776554444444556789999998 65655555 44578
Q ss_pred EEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcC
Q 006909 333 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 380 (626)
Q Consensus 333 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~ 380 (626)
|..+|+.+.....+...-.....+++.. +..+++-...+.|...|..
T Consensus 190 I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~ 236 (628)
T 4a0p_A 190 IESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKT 236 (628)
T ss_dssp EEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECC
Confidence 9999987644332222233445666643 3333333345666666643
No 298
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.27 E-value=0.012 Score=63.09 Aligned_cols=85 Identities=15% Similarity=0.066 Sum_probs=52.6
Q ss_pred CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 330 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 330 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
+|.|..||+.+++.+-.......+..-.....+..+++|+.||.++.||.++++.... ...... ....-+.|..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~-~~~~~g-----~~a~P~~y~~ 538 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK-FQTGSG-----IVSPPITWEQ 538 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSSC-----CCSCCEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE-ecCCCC-----cccCceEEEE
Confidence 5789999999988763333222322222233566888899999999999999887544 222211 1112255667
Q ss_pred CCCcEEEEEeC
Q 006909 410 DESQRIMITSE 420 (626)
Q Consensus 410 ~~~~~l~~~s~ 420 (626)
+|.+++++.+.
T Consensus 539 ~G~qYv~~~~G 549 (582)
T 1flg_A 539 DGEQYLGVTVG 549 (582)
T ss_dssp TTEEEEEEEEC
T ss_pred CCEEEEEEEcc
Confidence 77566666554
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.25 E-value=0.061 Score=53.64 Aligned_cols=227 Identities=12% Similarity=0.042 Sum_probs=116.8
Q ss_pred CccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeee--Eeec----CCCCeEEEEEeeCC---CCEEEEEeC-C-----C
Q 006909 267 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL--NVFD----HHNYVTCVQFNPID---DNYFISGSI-D-----G 331 (626)
Q Consensus 267 h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~----~~~~v~~~~~~p~~---~~~l~s~s~-d-----g 331 (626)
.-.....++|.|+|.|+.+..++.|.+++ .++.. ..+. .......++++| + +..|+.+.. . +
T Consensus 29 ~l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 29 GLEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CCSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEE
T ss_pred CCCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCcc
Confidence 34456799999999777777889999998 34322 1111 234688999999 6 444444433 2 5
Q ss_pred cEEEEeCCCCe------EEE-ec---cCCCCeEEEEEeeCCCEEEEEec-------------CCcEEEEEcCCCce----
Q 006909 332 KVRIWGVCEKR------VVD-WA---DVRDVISAICYIPDGKGFIVGSI-------------TGTCHFYKASGNDL---- 384 (626)
Q Consensus 332 ~v~iwd~~~~~------~~~-~~---~~~~~i~~i~~sp~g~~l~~g~~-------------dg~i~i~d~~~~~~---- 384 (626)
.|..++...+. +.. +. ........++|.|+|.+.++.+. .|.|.-++..+.-.
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 67788776432 111 11 11123468999999965554322 14555555543100
Q ss_pred -------eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCc--------EEEEeCCc---------------cee
Q 006909 385 -------KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK--------LRILDGVD---------------VIH 434 (626)
Q Consensus 385 -------~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~--------i~iwd~~~---------------~~~ 434 (626)
..+.+. .+ ......++|+|+...++++-...+. |.+..... ...
T Consensus 186 f~~~~~~~~~i~a-~G-----~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~ 259 (352)
T 2ism_A 186 FLGRRGARPEVYS-LG-----HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD 259 (352)
T ss_dssp TTTCTTSCTTEEE-EC-----CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred ccCCCCCCccEEE-Ec-----CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence 000111 11 1336678999943345554433333 44433111 000
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeee-ccCCcEEEEecCCCCcc
Q 006909 435 KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF-FSEGVSVAVQWPGIGTE 508 (626)
Q Consensus 435 ~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~~~g~~~av~~s~~~~~ 508 (626)
.............++| .+|.++++.-..+.|...+++....... ......+ ..-+....+++.|+|..
T Consensus 260 p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~-----~~~~~~~~~~~~rp~~v~~~pdG~l 328 (352)
T 2ism_A 260 PLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWR-----VLRVETALSGFGRLREVQVGPDGAL 328 (352)
T ss_dssp CSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEE-----EEEEEEEEESSCCEEEEEECTTSCE
T ss_pred CeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCccee-----ecchheecccCCCeeEEEECCCCcE
Confidence 1111112334567777 4676666665667777777764311000 0000111 22355667777787743
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.20 E-value=0.36 Score=52.08 Aligned_cols=198 Identities=8% Similarity=-0.041 Sum_probs=102.5
Q ss_pred cceEEEEEcCC-CeEEEE-eCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 006909 269 GDVLDLAWSNS-NYLLSC-SMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 345 (626)
Q Consensus 269 ~~V~~l~~s~~-~~l~s~-s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~ 345 (626)
...+.|++.++ +.|+.+ ...+.|...|+.......... ......++++.. + ..+++-...+.|...|..+++...
T Consensus 171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~-~-~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-D-ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESS-S-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeC-C-EEEEecCCCCEEEEEECCCCcccE
Confidence 45688999975 455544 456788888887543332222 122234666654 3 344444456778888876653211
Q ss_pred ecc------------CC--------------CCeEEEEE-----------eeCC--------------CEEEEEecCCcE
Q 006909 346 WAD------------VR--------------DVISAICY-----------IPDG--------------KGFIVGSITGTC 374 (626)
Q Consensus 346 ~~~------------~~--------------~~i~~i~~-----------sp~g--------------~~l~~g~~dg~i 374 (626)
... |. +....+|+ .|.| ..++.-+..+.|
T Consensus 249 ~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i 328 (619)
T 3s94_A 249 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDL 328 (619)
T ss_dssp ECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCE
T ss_pred EEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccce
Confidence 000 00 00111111 1221 112222233455
Q ss_pred EEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-eeeeeecCCCCCeEEEEEcCC
Q 006909 375 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTT 453 (626)
Q Consensus 375 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~ 453 (626)
+..++.........+...+ -..+..++|.+.+..++++-...+.|+.++.... ...+. ......+..+++.+.
T Consensus 329 ~~i~l~~~~~~~~~~~~~~-----l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-~~~~~~p~GlAvD~~ 402 (619)
T 3s94_A 329 RRISLDTPDFTDIVLQLED-----IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-TAQIAHPDGIAVDWV 402 (619)
T ss_dssp EEEESSSTTCCCEECCCSC-----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETT
T ss_pred EEEecCCCccceeEEeccc-----cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-ECCCCCcCceEEecc
Confidence 6666654432111111111 2457889999865455555556788999986532 22222 223356778999875
Q ss_pred CCEEE-EEeCCccEEEEECCCC
Q 006909 454 GKHII-SIGDDCRVYVWNYDEL 474 (626)
Q Consensus 454 g~~l~-s~s~dg~I~iwd~~~~ 474 (626)
++.|+ +-+..+.|.+.++++.
T Consensus 403 ~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 403 ARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTSC
T ss_pred cCcEEEEeCCCCcEEEEeCCCC
Confidence 55444 4455789999998865
No 301
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.17 E-value=0.32 Score=52.58 Aligned_cols=195 Identities=7% Similarity=-0.020 Sum_probs=124.6
Q ss_pred cceEEEEEcCC-CeEE-EEeCCCcEEEeccCCCeeeEeecC-CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 006909 269 GDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 345 (626)
Q Consensus 269 ~~V~~l~~s~~-~~l~-s~s~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~ 345 (626)
..+..|+|++. +.|+ +-..++.|..+++........+.. ......+++.+..++++++-...+.|.+.++.+.....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 45788999975 4544 555678899998876544443432 24577889987455556665667889999987654333
Q ss_pred ec-cCCCCeEEEEEeeCCCEEEEEec--CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 006909 346 WA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 422 (626)
Q Consensus 346 ~~-~~~~~i~~i~~sp~g~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg 422 (626)
+. ..-.....|+++|....|+.... .+.|...++.+...... . .. ......|++++++..++++-...+
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l-~--~~-----~~~P~GlalD~~~~~LY~aD~~~~ 188 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL-V--PN-----VGRANGLTIDYAKRRLYWTDLDTN 188 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-E--CS-----CSSEEEEEEETTTTEEEEEETTTT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE-E--CC-----CCCcceEEEccccCEEEEEECCCC
Confidence 22 33456789999996556666553 56787788776543221 1 11 257889999998655555656678
Q ss_pred cEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 423 KLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 423 ~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.|..+|.... ...+.. ......++++.. +...++-...+.|...|..++
T Consensus 189 ~I~~~d~dG~~~~v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 189 LIESSNMLGLNREVIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEEEEETTSCSCEEEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred EEEEEcCCCCceEEeec--cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 9999996532 222222 234556777764 444444445788888886555
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.14 E-value=0.014 Score=60.53 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=101.1
Q ss_pred CeEEEEEeeC-CCCEEEEEeCCCcEEEEeCCCCeEEEeccCC----CCeEEEEE-------eeCCCEEEEEecCC-----
Q 006909 310 YVTCVQFNPI-DDNYFISGSIDGKVRIWGVCEKRVVDWADVR----DVISAICY-------IPDGKGFIVGSITG----- 372 (626)
Q Consensus 310 ~v~~~~~~p~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----~~i~~i~~-------sp~g~~l~~g~~dg----- 372 (626)
....|+|.|. .++++++-...+.|++.|+.++.+..+.... .....++| +++|+.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999982 3455555554577999999998887654432 35889999 99999777776654
Q ss_pred --cEEEEEcCC-Cceee----eEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC-------ccee----
Q 006909 373 --TCHFYKASG-NDLKL----EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-------DVIH---- 434 (626)
Q Consensus 373 --~i~i~d~~~-~~~~~----~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~-------~~~~---- 434 (626)
.+.+++... +.... ..+. . ......++++|++..++++-..++.|..+|.. +...
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~-~------~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~ 292 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA-A------YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI 292 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE-E------ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred CceEEEEecCCCCceeecccceeec-c------CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence 255665333 12210 1111 1 13456788999665667777788899999975 2211
Q ss_pred ---------eeeecCCCCCeEEEEEcCCCCEEEEE-eCCccEEEEECCC
Q 006909 435 ---------KFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDE 473 (626)
Q Consensus 435 ---------~~~~~~~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd~~~ 473 (626)
.+...........++|+|+|++|+.+ +..+.|+.++.+.
T Consensus 293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 22222234567899999999965554 4567888877654
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.05 E-value=0.3 Score=48.61 Aligned_cols=228 Identities=14% Similarity=0.069 Sum_probs=120.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
...+.|+|.|+|+++++ ..+|.|++++. ++. .. +. ..+
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~~--~~------------------------------------~~~- 66 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-KL--VA------------------------------------SFD- 66 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE-EE--EE------------------------------------ECC-
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-eE--ee------------------------------------ccc-
Confidence 45789999999985555 55688888863 321 00 00 000
Q ss_pred eeeccCccceEEEEEcCC----CeEEEEeC----C----CcEEEeccCCC-------eee-Eeec--CCCCeEEEEEeeC
Q 006909 262 QELHGHKGDVLDLAWSNS----NYLLSCSM----D----KTVRMWQVGCN-------QCL-NVFD--HHNYVTCVQFNPI 319 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~----~~l~s~s~----d----~~v~iwd~~~~-------~~~-~~~~--~~~~v~~~~~~p~ 319 (626)
...........|+++|+ +.|+.+.. + ..|..|+.... +.+ ..+. .......++|.|
T Consensus 67 -v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p- 144 (354)
T 3a9g_A 67 -VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP- 144 (354)
T ss_dssp -CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-
T ss_pred -eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-
Confidence 01112345788999986 55554433 3 56777776543 111 1122 112346799999
Q ss_pred CCCEEEEEeC-------------CCcEEEEeCCCC---------eEEEeccCCCCeEEEEEee-CCCEEEEEecCC---c
Q 006909 320 DDNYFISGSI-------------DGKVRIWGVCEK---------RVVDWADVRDVISAICYIP-DGKGFIVGSITG---T 373 (626)
Q Consensus 320 ~~~~l~s~s~-------------dg~v~iwd~~~~---------~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg---~ 373 (626)
++.++++.+. .|.|.-++.... ..+...++. ....++|+| +|+.+++-...+ .
T Consensus 145 DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~de 223 (354)
T 3a9g_A 145 DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDE 223 (354)
T ss_dssp TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCE
T ss_pred CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcE
Confidence 8887776432 245655555432 011112222 345789999 565444432221 2
Q ss_pred EEEEEcCCCce---------------eeeEEeeccccccCCCCeEEEEEc-------CCCCcEEEEEeCCCcEEEEeCCc
Q 006909 374 CHFYKASGNDL---------------KLEKVDFHDRKKTSGNKITGIQFS-------RDESQRIMITSEDSKLRILDGVD 431 (626)
Q Consensus 374 i~i~d~~~~~~---------------~~~~~~~~~~~~~~~~~i~~l~~s-------~~~~~~l~~~s~dg~i~iwd~~~ 431 (626)
|.+.. .+.. ......+ .........++|. .+| .++++....+.|...+...
T Consensus 224 i~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~----~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 224 VNIIL--KGGNYGWPLATGKAGRGEFVDPVIDT----GSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp EEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC----TTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECG
T ss_pred EEEec--CCCcCCCCcccCCCCCCCCcCCEeec----CCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECC
Confidence 33222 1110 0000011 0112567888884 455 5666666677888888653
Q ss_pred c--ee-eeeec-CCCCCeEEEEEcCCCCEEEEEe
Q 006909 432 V--IH-KFKGL-PKSGSQMSASFTTTGKHIISIG 461 (626)
Q Consensus 432 ~--~~-~~~~~-~~~~~v~~~~~sp~g~~l~s~s 461 (626)
. .. ..... .....+..+++.|||.+.++..
T Consensus 297 ~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 297 NMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp GGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 2 11 11111 1245788999999997766654
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.00 E-value=0.33 Score=48.31 Aligned_cols=198 Identities=12% Similarity=0.088 Sum_probs=108.0
Q ss_pred ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCe-eeEeec----CCCCeEEEEEeeCC---CCEEEEEeC----C----C
Q 006909 268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVFD----HHNYVTCVQFNPID---DNYFISGSI----D----G 331 (626)
Q Consensus 268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~-~~~~~~----~~~~v~~~~~~p~~---~~~l~s~s~----d----g 331 (626)
-.....|+|.|++.|+.+..++.|++++. +++ .+..+. .......|+++| + +..|+.+.. + +
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcce
Confidence 45678999999998888888899999974 444 222211 234688999999 6 444444332 2 5
Q ss_pred cEEEEeCCCC--e------EEE-ec-cCCCCeEEEEEeeCCCEEEEEec-------------CCcEEEEEcCCCce----
Q 006909 332 KVRIWGVCEK--R------VVD-WA-DVRDVISAICYIPDGKGFIVGSI-------------TGTCHFYKASGNDL---- 384 (626)
Q Consensus 332 ~v~iwd~~~~--~------~~~-~~-~~~~~i~~i~~sp~g~~l~~g~~-------------dg~i~i~d~~~~~~---- 384 (626)
.|..|+.... . ++. +. ........+.|.|+|.+.++.+. .|.|.-++..+.-.
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777776554 1 111 11 11123467999999976555322 14455555443200
Q ss_pred --eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC---cEEEEeCCc---------------ceee-eeecCCCC
Q 006909 385 --KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS---KLRILDGVD---------------VIHK-FKGLPKSG 443 (626)
Q Consensus 385 --~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg---~i~iwd~~~---------------~~~~-~~~~~~~~ 443 (626)
..+.+ ..+. .....++|+|+...++++-...+ .|.+..... .... +.......
T Consensus 186 f~~~~i~-a~G~-----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ 259 (354)
T 3a9g_A 186 FPNSPIW-SYGH-----RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW 259 (354)
T ss_dssp STTCCEE-EECC-----SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred CCCCcEE-EEcc-----CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence 00111 1111 34568999994324444433222 244433111 0011 11101234
Q ss_pred CeEEEEEc-------CCCCEEEEEeCCccEEEEECCC
Q 006909 444 SQMSASFT-------TTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 444 ~v~~~~~s-------p~g~~l~s~s~dg~I~iwd~~~ 473 (626)
.+..++|. .+|.++++.-..+.|...+++.
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 57788883 5677777766677888888874
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.96 E-value=0.38 Score=48.33 Aligned_cols=204 Identities=12% Similarity=0.142 Sum_probs=130.7
Q ss_pred ccceEEEEEcCCCeEEEEeCCCcEEEeccCC-CeeeEeec-----CCCCeEEEEEeeCCCCEEEEEeC-------CCcEE
Q 006909 268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSI-------DGKVR 334 (626)
Q Consensus 268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s~s~-------dg~v~ 334 (626)
...|.-=.|-.+..|+-.+. ..|.-|++.. ..+.+.|. ....|..-..++ +.+.++..+. .|.+.
T Consensus 105 ~e~VvfWkWis~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQ 182 (494)
T 1bpo_A 105 TDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQ 182 (494)
T ss_dssp SSCCCEEEEEETTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEE
T ss_pred CCCceEEEecCCCeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEE
Confidence 34666667766665555443 5799999964 35666664 234566777777 7776654432 36789
Q ss_pred EEeCCCCeEEEeccCCCCeEEEEEeeC---CCEEEEEec---CCcEEEEEcCCC---c--eeeeEEeeccccccCCCCeE
Q 006909 335 IWGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSI---TGTCHFYKASGN---D--LKLEKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 335 iwd~~~~~~~~~~~~~~~i~~i~~sp~---g~~l~~g~~---dg~i~i~d~~~~---~--~~~~~~~~~~~~~~~~~~i~ 403 (626)
+|..+.+....+.+|......+.+.-+ .+.++.+.. .+.+++.++... . .........-......+-..
T Consensus 183 LYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv 262 (494)
T 1bpo_A 183 LYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 262 (494)
T ss_dssp EEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE
T ss_pred EeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee
Confidence 999988777777777554433332211 123343433 278999998543 1 11112222222223345667
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
++..++.. ..+..-+.-|.|++||+.+....+...-....|...+.+....-++.....|.|.--.++..
T Consensus 263 amqvs~ky-gviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 263 AMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EEEecccC-CEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 88888875 58889999999999999998888887666777766666655556666667888877777664
No 306
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.89 E-value=0.41 Score=47.54 Aligned_cols=67 Identities=7% Similarity=0.085 Sum_probs=40.4
Q ss_pred CCeEEEEEcC-------CCCcEEEEEeCCCcEEEEeCCcc--eeeeeec-CCCCCeEEEEEcCCCCEEEEEe-CCccEE
Q 006909 400 NKITGIQFSR-------DESQRIMITSEDSKLRILDGVDV--IHKFKGL-PKSGSQMSASFTTTGKHIISIG-DDCRVY 467 (626)
Q Consensus 400 ~~i~~l~~s~-------~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~-~~~~~v~~~~~sp~g~~l~s~s-~dg~I~ 467 (626)
..+..+.|.. +| .++++....+.|...++... ....... .....+..+++.|||.+.++.. .+|.|+
T Consensus 271 ~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELL 348 (353)
T ss_dssp CCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEE
T ss_pred cCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEE
Confidence 4577888864 34 56666667778877775432 1111111 1235789999999998666543 345443
No 307
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.87 E-value=0.087 Score=52.81 Aligned_cols=148 Identities=11% Similarity=0.185 Sum_probs=92.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCe---EEEecc--CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee---------
Q 006909 320 DDNYFISGSIDGKVRIWGVCEKR---VVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK--------- 385 (626)
Q Consensus 320 ~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~--~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~--------- 385 (626)
++..++.+- ++.||.-++..+. ...... .-..|..+..+|+|++||+.+ +..|.|..+..+...
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 555555554 4678877776332 222221 123678899999999999885 458888888732211
Q ss_pred --eeEEeeccccccCCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEeCCc----ce------eeeeecCCCCCeEEEEEc
Q 006909 386 --LEKVDFHDRKKTSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVD----VI------HKFKGLPKSGSQMSASFT 451 (626)
Q Consensus 386 --~~~~~~~~~~~~~~~~i~~l~~s~~~~--~~l~~~s~dg~i~iwd~~~----~~------~~~~~~~~~~~v~~~~~s 451 (626)
...............+|..+.|+|-+. ..|++-..|+.|++||+.. +. ..+........|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 112222211111347899999999753 3899999999999999763 11 111111223678899999
Q ss_pred CCCCEEEEEe--CCccEEEE
Q 006909 452 TTGKHIISIG--DDCRVYVW 469 (626)
Q Consensus 452 p~g~~l~s~s--~dg~I~iw 469 (626)
+++-.|...+ ..|-|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 8876666644 66777653
No 308
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.80 E-value=0.0055 Score=67.45 Aligned_cols=179 Identities=8% Similarity=-0.056 Sum_probs=105.6
Q ss_pred CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE-eCCCcEEEEeCCC----CeEEEec-cCCCCeEEEEEeeC
Q 006909 288 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDGKVRIWGVCE----KRVVDWA-DVRDVISAICYIPD 361 (626)
Q Consensus 288 d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~v~iwd~~~----~~~~~~~-~~~~~i~~i~~sp~ 361 (626)
.+.|+..++.+......+.....+..++|.+ ..+.|+.+ ...+.|+.+++.+ ....... ........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 3578888888776655555455677899998 55555544 4457899999875 2222222 11233556888865
Q ss_pred CCEE-EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEeCCcceeeeeec
Q 006909 362 GKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGL 439 (626)
Q Consensus 362 g~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-g~i~iwd~~~~~~~~~~~ 439 (626)
+..| ++-...+.|.++++.+..... + ... .......+++.|.+..++++-... +.|.++++..........
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~--l-~~~----~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~ 536 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKT--L-FRE----QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 536 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEE--E-CCC----SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEE--E-EeC----CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence 4444 444556789999887654321 1 111 113467889998764444443333 678887754322211111
Q ss_pred CCCCCeEEEEEcCCCCEEEEE-eCCccEEEEECCCC
Q 006909 440 PKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDEL 474 (626)
Q Consensus 440 ~~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd~~~~ 474 (626)
........++|+|++..|+.+ +..+.|.+++++..
T Consensus 537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 123456789999876655544 45678999998753
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.77 E-value=0.5 Score=46.77 Aligned_cols=187 Identities=12% Similarity=0.136 Sum_probs=109.0
Q ss_pred ceEEEEEcCCCeEEEEe-------------CCCcEEEeccCC--CeeeEeec--------CCCCeEEEEEeeC-CCC-EE
Q 006909 270 DVLDLAWSNSNYLLSCS-------------MDKTVRMWQVGC--NQCLNVFD--------HHNYVTCVQFNPI-DDN-YF 324 (626)
Q Consensus 270 ~V~~l~~s~~~~l~s~s-------------~d~~v~iwd~~~--~~~~~~~~--------~~~~v~~~~~~p~-~~~-~l 324 (626)
..-+++..|+|.+++++ .+|.|.++|..+ ++. ..+. ..-....+.+.+. ++. +|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 44566778888766665 689999999873 222 2222 1235677777661 233 34
Q ss_pred EEE-eC--CCcEEEEeCCC--CeEEEe--cc--CCCCeEEEEEeeCCCEEEEEec-----------------CCcEEEEE
Q 006909 325 ISG-SI--DGKVRIWGVCE--KRVVDW--AD--VRDVISAICYIPDGKGFIVGSI-----------------TGTCHFYK 378 (626)
Q Consensus 325 ~s~-s~--dg~v~iwd~~~--~~~~~~--~~--~~~~i~~i~~sp~g~~l~~g~~-----------------dg~i~i~d 378 (626)
+.+ .. +.+|.+|++.. +..... .. .-...+.+.+.++|.+.++... .|.+..++
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 443 32 45677876643 332221 11 1245789999999987666541 23444454
Q ss_pred cCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc-c----eeeeeecCCCCCeEEEEEcC-
Q 006909 379 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-V----IHKFKGLPKSGSQMSASFTT- 452 (626)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~-~----~~~~~~~~~~~~v~~~~~sp- 452 (626)
. .+.. .. ..+. ...+.++|+||+..++++-+..+.|..|++.. . ...+. ..+..-.+++.+
T Consensus 210 ~--~~~~--~~-~~~l-----~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e 276 (355)
T 3sre_A 210 P--NDVR--VV-AEGF-----DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPV 276 (355)
T ss_dssp T--TCCE--EE-EEEE-----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTT
T ss_pred C--CeEE--Ee-ecCC-----cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCC
Confidence 4 2221 11 1111 46789999999855556666788999999642 1 12221 245677888888
Q ss_pred CCCEEEEEeCC-ccEEEEE
Q 006909 453 TGKHIISIGDD-CRVYVWN 470 (626)
Q Consensus 453 ~g~~l~s~s~d-g~I~iwd 470 (626)
+|++.+++..+ +.|..|+
T Consensus 277 ~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 277 TGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp TCCEEEEEESCHHHHHSCC
T ss_pred CCcEEEEecCCceEEEEEC
Confidence 58887766544 3444443
No 310
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.60 E-value=0.46 Score=46.81 Aligned_cols=150 Identities=11% Similarity=0.002 Sum_probs=84.2
Q ss_pred CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe-------ccCCCCeEEEEEeeC---CCEEEEEe---cCCc
Q 006909 307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-------ADVRDVISAICYIPD---GKGFIVGS---ITGT 373 (626)
Q Consensus 307 ~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~-------~~~~~~i~~i~~sp~---g~~l~~g~---~dg~ 373 (626)
.-...+.|+|.| ++.++++--..|.|++++..++..... .........|+++|+ +..|++.. .++.
T Consensus 30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 345678999999 898777655489999998765554322 123456789999995 34555432 3455
Q ss_pred EEEEEcCCCc-----eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC-------------CCcEEEEeCCcc---
Q 006909 374 CHFYKASGND-----LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-------------DSKLRILDGVDV--- 432 (626)
Q Consensus 374 i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~-------------dg~i~iwd~~~~--- 432 (626)
|.-|.+.... .......+.............|.|.||| .++++.+. .|.|.-++....
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~ 187 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP 187 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence 6666665421 1111111111111112345679999998 45555332 355555554321
Q ss_pred ------eeeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909 433 ------IHKFKGLPKSGSQMSASFTTTGKHIISI 460 (626)
Q Consensus 433 ------~~~~~~~~~~~~v~~~~~sp~g~~l~s~ 460 (626)
...+. ..+ .....++|+|+|.+.++=
T Consensus 188 ~nPf~~~~i~a-~G~-RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 188 GNPFPGSPVYS-YGH-RNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp TCSSTTCCEEE-BCC-SBCCEEEECTTCCEEEEE
T ss_pred CCCCCCCeEEe-eCC-CCcceEEECCCCCEEEEe
Confidence 11222 223 345689999988766653
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.56 E-value=0.53 Score=46.59 Aligned_cols=150 Identities=15% Similarity=0.141 Sum_probs=86.3
Q ss_pred ceEEEEEcC--CC--eEEEEeC---CCcEEEeccCCC--e--eeEeecC--CCCeEEEEEeeCCCCEEEEEeC-------
Q 006909 270 DVLDLAWSN--SN--YLLSCSM---DKTVRMWQVGCN--Q--CLNVFDH--HNYVTCVQFNPIDDNYFISGSI------- 329 (626)
Q Consensus 270 ~V~~l~~s~--~~--~l~s~s~---d~~v~iwd~~~~--~--~~~~~~~--~~~v~~~~~~p~~~~~l~s~s~------- 329 (626)
....|.+.+ ++ +|+.+.. +.+|.+|++..+ . .+..+.+ -...+.+.+.+ ++.++++...
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHH
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCccc
Confidence 455555544 33 4554422 467888877543 2 2223332 34688999999 8887776541
Q ss_pred ----------CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEEeeccccccC
Q 006909 330 ----------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTS 398 (626)
Q Consensus 330 ----------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 398 (626)
.|.|.-+|. +++......-...+.++|+||++.++++. ..+.|..|++.........-.+..
T Consensus 192 ~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~----- 264 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF----- 264 (355)
T ss_dssp HHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-----
T ss_pred ccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC-----
Confidence 244555555 33333333345678999999999888765 568999999874322111111111
Q ss_pred CCCeEEEEEcC-CCCcEEEEEeCC-CcEEEEe
Q 006909 399 GNKITGIQFSR-DESQRIMITSED-SKLRILD 428 (626)
Q Consensus 399 ~~~i~~l~~s~-~~~~~l~~~s~d-g~i~iwd 428 (626)
....-.+++.+ +| .+.+++..+ +.|..|+
T Consensus 265 ~g~PDGi~vD~e~G-~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 265 DTLVDNISVDPVTG-DLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp SSEEEEEEECTTTC-CEEEEEESCHHHHHSCC
T ss_pred CCCCceEEEeCCCC-cEEEEecCCceEEEEEC
Confidence 25677888888 47 455545433 3444444
No 312
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.49 E-value=0.041 Score=49.90 Aligned_cols=173 Identities=9% Similarity=0.008 Sum_probs=94.0
Q ss_pred eEEEEeCCCcEEEeccCCCe------eeEeecC--CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCC
Q 006909 281 YLLSCSMDKTVRMWQVGCNQ------CLNVFDH--HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 352 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~------~~~~~~~--~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 352 (626)
.|+....| +|+.=....+. ....+.. -..+..++|+| ++.+.++ .+|.++-.+..+.....+......
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 45555555 55443333222 1223333 24677999999 9987766 678877777655332222222222
Q ss_pred --------eEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee--E-EeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909 353 --------ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--K-VDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421 (626)
Q Consensus 353 --------i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~--~-~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d 421 (626)
..++.|.|+|.+.++ .||.|+-++-.+...... . ..... ..-..+..|.|.|+| .+. +.. |
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~---~gw~~~~~lff~p~G-~Ly-av~-d 153 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGS---GGWSGFKFLFFHPNG-YLY-AVH-G 153 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEEC---SSGGGEEEEEECTTS-CEE-EEE-T
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEecc---CCCCceEEEEECCCc-eEE-EEe-C
Confidence 378999999987777 669887776533221110 0 00000 001367899999998 444 444 7
Q ss_pred CcEEEEeCC-cc------eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEE
Q 006909 422 SKLRILDGV-DV------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY 467 (626)
Q Consensus 422 g~i~iwd~~-~~------~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~ 467 (626)
+.++-.... .. .....+......-.-+.|++++...++. ++.++
T Consensus 154 g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 154 QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 775433211 00 1112222223334456789998877766 66443
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.38 E-value=0.2 Score=48.44 Aligned_cols=182 Identities=9% Similarity=0.054 Sum_probs=93.7
Q ss_pred CeEEEEeCC-----CcEEEeccCCCe---eeEeec--CCCCeEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCeEE
Q 006909 280 NYLLSCSMD-----KTVRMWQVGCNQ---CLNVFD--HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVV 344 (626)
Q Consensus 280 ~~l~s~s~d-----~~v~iwd~~~~~---~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d-----g~v~iwd~~~~~~~ 344 (626)
..++.|+.+ ..+.+||+.+++ ....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 356666654 468899988765 333221 11111122222 66777777654 35889998876644
Q ss_pred EeccCC--CCeEEEEEeeCCCEEEEEecC-----CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909 345 DWADVR--DVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 417 (626)
Q Consensus 345 ~~~~~~--~~i~~i~~sp~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~ 417 (626)
...... ..-.+++ ..+++.++.|+.+ ..+.+||+.+....... .... .......+.+ ++ .+++.
T Consensus 142 ~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~----~r~~~~~~~~--~~-~i~v~ 212 (301)
T 2vpj_A 142 MLGDMQTAREGAGLV-VASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT-PMAT----KRSGAGVALL--ND-HIYVV 212 (301)
T ss_dssp EEEECSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC-CCSS----CCBSCEEEEE--TT-EEEEE
T ss_pred ECCCCCCCcccceEE-EECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC-CCCc----ccccceEEEE--CC-EEEEE
Confidence 332211 1111222 2367777777654 46889998876543221 1111 0111122222 33 57777
Q ss_pred EeCC-----CcEEEEeCCcceeeeee-cCC-CCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECCCC
Q 006909 418 TSED-----SKLRILDGVDVIHKFKG-LPK-SGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL 474 (626)
Q Consensus 418 ~s~d-----g~i~iwd~~~~~~~~~~-~~~-~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~~~ 474 (626)
|+.+ ..+.+||..+..-.... ... ......+. -+++.++.|+.+ ..|.+||..+.
T Consensus 213 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 213 GGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred eCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 7654 56899997743322211 111 11122222 256677777654 45778887764
No 314
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.38 E-value=0.3 Score=47.13 Aligned_cols=182 Identities=14% Similarity=0.148 Sum_probs=92.8
Q ss_pred eEEEEeCC-----CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCC-----cEEEEeCCCCeEEEecc
Q 006909 281 YLLSCSMD-----KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEKRVVDWAD 348 (626)
Q Consensus 281 ~l~s~s~d-----~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~ 348 (626)
.++.|+.+ ..+.+||..+++....-. ....-.+++.. ++.+++.|+.++ .+.+||+.+.+-.....
T Consensus 64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 141 (302)
T 2xn4_A 64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP 141 (302)
T ss_dssp EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC
T ss_pred EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC
Confidence 55666644 358889988776544322 11111122222 677788887653 57889988776544322
Q ss_pred CCCC--eEEEEEeeCCCEEEEEecC-------CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909 349 VRDV--ISAICYIPDGKGFIVGSIT-------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 419 (626)
Q Consensus 349 ~~~~--i~~i~~sp~g~~l~~g~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s 419 (626)
...+ -.+++. .+++.++.|+.+ ..+.+||+.+....... ..... ......+.+ ++ .+++.|+
T Consensus 142 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~iyv~GG 212 (302)
T 2xn4_A 142 MNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA-EMSTR----RSGAGVGVL--NN-LLYAVGG 212 (302)
T ss_dssp CSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC-CCSSC----CBSCEEEEE--TT-EEEEECC
T ss_pred CCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC-CCccc----cccccEEEE--CC-EEEEECC
Confidence 2211 112222 366677776643 35888998876543221 11110 111122222 33 5777776
Q ss_pred CC-----CcEEEEeCCcceeee-eecCCCCCeEEEEEcCCCCEEEEEeCCc-----cEEEEECCCC
Q 006909 420 ED-----SKLRILDGVDVIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDEL 474 (626)
Q Consensus 420 ~d-----g~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~s~s~dg-----~I~iwd~~~~ 474 (626)
.+ ..+.+||..+..-.. ........-.+++. .+++.++.|+.++ .+.+||..+.
T Consensus 213 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 213 HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp BSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 54 468899976433221 11111111111222 2566777776543 4777887764
No 315
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.35 E-value=0.8 Score=44.19 Aligned_cols=186 Identities=12% Similarity=0.135 Sum_probs=116.1
Q ss_pred cCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC-eEEEec-cC----C
Q 006909 277 SNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVDWA-DV----R 350 (626)
Q Consensus 277 s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~-~~----~ 350 (626)
+|...+++--...++.|+|+++.+.++.+.....|.-=.|- +.+.|+..+ +..|+-|++.+. ...+.. .| .
T Consensus 75 nP~~~ViALrag~~LQiFnletK~klks~~~~e~VvfWkWi--s~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~ 151 (365)
T 2xzh_A 75 NPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAG 151 (365)
T ss_dssp CSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCEEEEEEC--SSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTT
T ss_pred CCCccEEEEecCCeEEEechHHhhhhcceecCCccEEEEec--CCCeEEEEc-CCcEEEEcccCCCCCceeeecchhccc
Confidence 56553333323678999999999999999988889888887 566666665 467999998752 233222 21 3
Q ss_pred CCeEEEEEeeCCCEEEEEec-------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC----CcEEEEEe
Q 006909 351 DVISAICYIPDGKGFIVGSI-------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE----SQRIMITS 419 (626)
Q Consensus 351 ~~i~~i~~sp~g~~l~~g~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~----~~~l~~~s 419 (626)
..|..-..+++.++++..+- .|.+.+|..+....+. ..++ ...- ..+-.+| ..+++.+.
T Consensus 152 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~----ieGh----aa~F--~~~~~~g~~~~~~lf~fa~ 221 (365)
T 2xzh_A 152 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASF--AQFKMEGNAEESTLFCFAV 221 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE----ECCS----EEEE--EEECCTTCSSCEEEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccce----eeee----eeee--EEEecCCCCCCceEEEEEE
Confidence 55777777888898776442 3678899887654322 1111 0111 1111111 12222222
Q ss_pred C---CCcEEEEeCCcc---eeee-----e----ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909 420 E---DSKLRILDGVDV---IHKF-----K----GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 420 ~---dg~i~iwd~~~~---~~~~-----~----~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~ 475 (626)
. .++++|.++... ...+ . ......-..++..++.-..++.-+.-|.|++||++++.
T Consensus 222 r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt 292 (365)
T 2xzh_A 222 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 292 (365)
T ss_dssp EETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred ecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCc
Confidence 2 258888886432 1111 1 11124456778888888899999999999999999984
No 316
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.21 E-value=0.83 Score=53.00 Aligned_cols=140 Identities=11% Similarity=0.155 Sum_probs=88.7
Q ss_pred CeEEEEe----------CCCcEEEeccCCCeeeEe--ecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe-
Q 006909 280 NYLLSCS----------MDKTVRMWQVGCNQCLNV--FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW- 346 (626)
Q Consensus 280 ~~l~s~s----------~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~- 346 (626)
.+|+.|. ..|.|.++++..++.... ....++|++++-. +| +|++|- ..+|++|++...+.+..
T Consensus 845 ~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g-~Lla~i-g~~l~vy~l~~~~~L~~~ 920 (1158)
T 3ei3_A 845 TYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NG-KLLASI-NSTVRLYEWTTEKELRTE 920 (1158)
T ss_dssp CEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TT-EEEEEE-TTEEEEEEECTTSCEEEE
T ss_pred EEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CC-EEEEEc-CCEEEEEECCCCceEEEE
Confidence 3777665 347899999875433222 2467888888754 45 444443 57899999986543331
Q ss_pred ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 006909 347 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 426 (626)
Q Consensus 347 ~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i 426 (626)
..+-..|..+.....++++++|..-..+.++..+........+.- ......++++.+-.++ .++.+..+|.|.+
T Consensus 921 ~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~----D~~~~~vta~~~ld~~--t~l~aD~~gNl~v 994 (1158)
T 3ei3_A 921 CNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR----DFNPNWMSAVEILDDD--NFLGAENAFNLFV 994 (1158)
T ss_dssp EEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE----CCSCBCEEEEEEEETT--EEEEEETTSEEEE
T ss_pred eeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe----ecccccEEEEEEEccC--cEEEEcCCCcEEE
Confidence 111122334445456889999998888887665433322222221 1223678999988764 7888999999999
Q ss_pred EeC
Q 006909 427 LDG 429 (626)
Q Consensus 427 wd~ 429 (626)
+..
T Consensus 995 l~~ 997 (1158)
T 3ei3_A 995 CQK 997 (1158)
T ss_dssp EEE
T ss_pred Eec
Confidence 863
No 317
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.20 E-value=0.14 Score=51.44 Aligned_cols=143 Identities=13% Similarity=0.177 Sum_probs=91.9
Q ss_pred eEEEEeCCCcEEEeccCCCeeeEeecCC-----CCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe-------------
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCLNVFDHH-----NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR------------- 342 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~-----~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~------------- 342 (626)
.++.+- ++.||.-++......+.+... ..|..+..+| +|++|+..+ +..|.|..+..+.
T Consensus 34 ~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q 110 (452)
T 3pbp_A 34 RIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ 110 (452)
T ss_dssp EEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred EEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccc
Confidence 444443 367887777644444454432 2578899999 999999886 4678888876221
Q ss_pred EEEec-c-----CCCCeEEEEEeeC---CCEEEEEecCCcEEEEEcCCCceeeeEEeecc---ccccCCCCeEEEEEcCC
Q 006909 343 VVDWA-D-----VRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFHD---RKKTSGNKITGIQFSRD 410 (626)
Q Consensus 343 ~~~~~-~-----~~~~i~~i~~sp~---g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~s~~ 410 (626)
+..+. + ...+|..+.|||- +..|++-..|+.|++||+.........+.... ........|.+++|.++
T Consensus 111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~ 190 (452)
T 3pbp_A 111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKD 190 (452)
T ss_dssp EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTT
T ss_pred eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCC
Confidence 11111 1 2567999999994 56899999999999999986321111111000 01112267899999997
Q ss_pred CCcEEEEEe--CCCcEEEE
Q 006909 411 ESQRIMITS--EDSKLRIL 427 (626)
Q Consensus 411 ~~~~l~~~s--~dg~i~iw 427 (626)
+ -.|.+.+ .+|.|+-.
T Consensus 191 ~-lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 191 G-LTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp S-SCEEEEECTTSCEEEEE
T ss_pred C-cEEEEEecCCCCCEEEE
Confidence 6 5566644 77888664
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.13 E-value=0.76 Score=44.31 Aligned_cols=180 Identities=9% Similarity=0.128 Sum_probs=94.0
Q ss_pred eEEEEeCC----CcEEEeccCCCeeeEeec--CCC-CeEEEEEeeCCCCEEEEEeCC------CcEEEEeCCCCeEEEec
Q 006909 281 YLLSCSMD----KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWA 347 (626)
Q Consensus 281 ~l~s~s~d----~~v~iwd~~~~~~~~~~~--~~~-~v~~~~~~p~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~ 347 (626)
.++.|+.+ ..+.+||..+++....-. ... ....+.+ ++.+++.|+.+ ..+.+||..+.+-....
T Consensus 58 lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 58 VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp EEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred EEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 56666654 568889988776544332 111 1222222 67777888765 45899999887644432
Q ss_pred cCCC--CeEEEEEeeCCCEEEEEec---------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909 348 DVRD--VISAICYIPDGKGFIVGSI---------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 416 (626)
Q Consensus 348 ~~~~--~i~~i~~sp~g~~l~~g~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~ 416 (626)
.... .-.+++ ..+++.++.|+. -..+.+||+.+....... .+.. ....- ++... ++ ++++
T Consensus 135 ~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~----~r~~~-~~~~~-~~-~i~v 205 (306)
T 3ii7_A 135 SMLTQRCSHGMV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC-PMIE----ARKNH-GLVFV-KD-KIFA 205 (306)
T ss_dssp CCSSCCBSCEEE-EETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC-CCSS----CCBSC-EEEEE-TT-EEEE
T ss_pred CCcCCcceeEEE-EECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC-Cccc----hhhcc-eEEEE-CC-EEEE
Confidence 2211 111222 236666777654 345889998877543221 1111 00111 22222 33 5666
Q ss_pred EEeCC-----CcEEEEeCCcceeeee-ecC-CCCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECCCC
Q 006909 417 ITSED-----SKLRILDGVDVIHKFK-GLP-KSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL 474 (626)
Q Consensus 417 ~~s~d-----g~i~iwd~~~~~~~~~-~~~-~~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~~~ 474 (626)
.|+.+ ..+.+||..+..-... ..+ .......+.+ +++.++.|+.+ ..+.+||..+.
T Consensus 206 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 206 VGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 66543 4688899764322211 111 1112222333 56777777744 46778887764
No 319
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.02 E-value=3.3 Score=48.04 Aligned_cols=224 Identities=8% Similarity=0.040 Sum_probs=120.9
Q ss_pred cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeE--eecCCCCeEEEEEeeCC-----CCEEEEEeC-CCcEEEEeCCC
Q 006909 269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN--VFDHHNYVTCVQFNPID-----DNYFISGSI-DGKVRIWGVCE 340 (626)
Q Consensus 269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~~p~~-----~~~l~s~s~-dg~v~iwd~~~ 340 (626)
..|...+.+. .+++.++ ++.+.++.+..++... .......|.|+++.|.. ..+++.|.. |++|+|+++.+
T Consensus 514 ~~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 514 KNISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 3566666554 3455554 5778888877654322 23456789999998622 478999997 99999999987
Q ss_pred CeEEEeccC--CCCeEEEEEee--CCCEEEEEecCCcEEEEEcCC--CceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909 341 KRVVDWADV--RDVISAICYIP--DGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 414 (626)
Q Consensus 341 ~~~~~~~~~--~~~i~~i~~sp--~g~~l~~g~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~ 414 (626)
-+.+..... .....++.+.. ...+|.+|-.||.+.-+.+.. +.........-+. .++.=..+...|..-
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~-----~pv~L~~~~~~~~~~ 666 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGT-----QPTVLRTFRSLSTTN 666 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCS-----SCCEEEEEESSSCEE
T ss_pred CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCC-----CceEEEEEeeCCcee
Confidence 665544333 23455555543 335788999999987776653 3332222222221 344444444444334
Q ss_pred EEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC--CCEEEEEeCCccEEEEECCCCCC--CCCCccCCccceee
Q 006909 415 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT--GKHIISIGDDCRVYVWNYDELCF--PSSKQKNSVRSCEH 490 (626)
Q Consensus 415 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~~~~~ 490 (626)
+++.+. ....++..... ..+.......--....|+.. ..-++..+ ++.++|..+++... ......+.....++
T Consensus 667 V~a~s~-rp~liy~~~~~-l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~ 743 (1158)
T 3ei3_A 667 VFACSD-RPTVIYSSNHK-LVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKIC 743 (1158)
T ss_dssp EEEESS-SCEEEEESSSS-EEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEE
T ss_pred EEEECC-CCEEEEEcCCc-eEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEE
Confidence 444443 33333432222 22332222222234456432 23344443 55699988865411 01112223334456
Q ss_pred eccCCcEEEEec
Q 006909 491 FFSEGVSVAVQW 502 (626)
Q Consensus 491 ~~~~g~~~av~~ 502 (626)
++|+...+++.-
T Consensus 744 y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 744 YQEVSQCFGVLS 755 (1158)
T ss_dssp EEGGGTEEEEEE
T ss_pred EcCCCCEEEEEE
Confidence 777666655543
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.96 E-value=0.52 Score=45.61 Aligned_cols=173 Identities=12% Similarity=0.068 Sum_probs=87.0
Q ss_pred CcEEEeccCCCeeeEeec--CC-CCeEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCeEEEeccCCCC--eEEEEE
Q 006909 289 KTVRMWQVGCNQCLNVFD--HH-NYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRDV--ISAICY 358 (626)
Q Consensus 289 ~~v~iwd~~~~~~~~~~~--~~-~~v~~~~~~p~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~~~~--i~~i~~ 358 (626)
..+.+||..+++....-. .. .....+.+ ++.+++.|+.+ ..+.+||..+.+-........+ -.+++.
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 166 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV 166 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence 468889988775443322 11 11222222 66777777643 3588999988765443222111 112222
Q ss_pred eeCCCEEEEEecC-----CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEe
Q 006909 359 IPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRILD 428 (626)
Q Consensus 359 sp~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-----g~i~iwd 428 (626)
-+++.++.|+.+ ..+.+||+.+....... .+.. ....-..+.+ ++ .+++.|+.+ ..+.+||
T Consensus 167 -~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~----~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd 237 (308)
T 1zgk_A 167 -LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT-AMNT----IRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYD 237 (308)
T ss_dssp -ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC-CCSS----CCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEE
T ss_pred -ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC-CCCC----ccccceEEEE--CC-EEEEEeCCCCCCccceEEEEe
Confidence 267777777654 46889998776543221 1111 1111222223 33 577777654 5689999
Q ss_pred CCcceeeeee-cCCCCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECCCC
Q 006909 429 GVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL 474 (626)
Q Consensus 429 ~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~~~ 474 (626)
..+..-.... .+....-.+++. -+++.++.|+.+ ..+.+||+.+.
T Consensus 238 ~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 238 VETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp TTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 7643322211 111111112222 256666666643 34667776653
No 321
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.95 E-value=2.7 Score=46.49 Aligned_cols=193 Identities=12% Similarity=0.153 Sum_probs=114.3
Q ss_pred ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe
Q 006909 268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 346 (626)
Q Consensus 268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 346 (626)
...|.++....++.|..++.+| +..||..+.+...... ....|.++.. . ++ .|..++.+ -|..+|..+++....
T Consensus 62 ~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~-~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 62 NTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-Q-GD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SSCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-E-TT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred CceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-c-CC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 3468888877888888887765 7889988765433111 2335777654 3 45 45556655 588899887776544
Q ss_pred c-----cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909 347 A-----DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421 (626)
Q Consensus 347 ~-----~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d 421 (626)
. .....|.++....+|. |.+|+.. -+..|+..+..... .............|.++...+++ ..|.+|+.
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~--~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~- 210 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQ-IYVGTYN-GLCRYIPSNGKFEG--IPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE- 210 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCC-EEEEETT-EEEEEETTTTEEEE--ECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-
T ss_pred ccCCCCcCCCeEEEEEEcCCCC-EEEEeCC-CHhhCccCCCceEE--ecCCCccccccceeEEEEEECCC-CEEEEEEC-
Confidence 1 1234678888777775 4456654 57778876654321 11111111112458888877765 34444543
Q ss_pred CcEEEEeCCcce-eeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 422 SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 422 g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+-+..+|..+.. ..+... ....|.++....+|.+.+.. .+ -+.+++..+.
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWigT-~~-Gl~~~~~~~~ 261 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAF-HNNSIKSLALDGNGDLLAGT-DN-GLYVYHNDTT 261 (758)
T ss_dssp EEEEEEETTTTEEEEEEEE-EEEEEEEEEECTTCCEEEEE-TT-EEEEECCTTS
T ss_pred CCCeEEcCCCCeEEeccCC-CCCeEEEEEEcCCCCEEEEe-CC-ceeEEecCCC
Confidence 457888865432 222211 12357788888888766654 44 5788887654
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.90 E-value=1.7 Score=43.77 Aligned_cols=190 Identities=11% Similarity=0.129 Sum_probs=117.5
Q ss_pred EcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC-eEEEe-ccC----
Q 006909 276 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVDW-ADV---- 349 (626)
Q Consensus 276 ~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~-~~~~~-~~~---- 349 (626)
.+|...+++--...++.|+|+++.+.++.+.....|.-=.|- +.+.|+..+ +..|+-|++.+. ..+.. ..|
T Consensus 73 MnP~~~iiALrag~~lQiFnle~K~klks~~~~e~VvfWkWi--s~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~ 149 (494)
T 1bpo_A 73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA 149 (494)
T ss_dssp ECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEEE--ETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred eCCCCcEEEEecCCeEEEEchHHhhhhcceecCCCceEEEec--CCCeEEEEc-CCeeEEecccCCCCchhheecchhcc
Confidence 355543333223689999999999999999888888888887 456666655 468999999642 23222 222
Q ss_pred CCCeEEEEEeeCCCEEEEEe-------cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc--CCCCcEEEEEeC
Q 006909 350 RDVISAICYIPDGKGFIVGS-------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS--RDESQRIMITSE 420 (626)
Q Consensus 350 ~~~i~~i~~sp~g~~l~~g~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--~~~~~~l~~~s~ 420 (626)
...|..-..+++.++++..+ -.|.+.+|..+...... ..++ ...-..+.+. +....++..+..
T Consensus 150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~----ieGh----aa~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE----ECCS----EEEEEEEECTTCSSEEEEEEEEEC
T ss_pred cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch----heee----eeeeEEEecCCCCCCceEEEEEEe
Confidence 35677777788999887644 24678899887654322 1111 1111111111 111123333333
Q ss_pred ---CCcEEEEeCCcc---eeee-----ee----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCC
Q 006909 421 ---DSKLRILDGVDV---IHKF-----KG----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 476 (626)
Q Consensus 421 ---dg~i~iwd~~~~---~~~~-----~~----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 476 (626)
.++++|.++... ...+ .. .....-..++..++.-..++.-+.-|.|++||+.++..
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence 378899887432 1111 11 11244567888899888999999999999999999843
No 323
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.81 E-value=1.6 Score=42.89 Aligned_cols=243 Identities=12% Similarity=0.048 Sum_probs=123.7
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
++...-..-+.|+|.|||+++++--..|.|++++..++......-
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~----------------------------------- 70 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGE----------------------------------- 70 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-----------------------------------
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecc-----------------------------------
Confidence 333444568899999999988876558989888755432110000
Q ss_pred ccCCCceeeccCccceEEEEEcCC----CeEEEE---eCCCcEEEeccCCC----------eee-Eeec--CCCCeEEEE
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNS----NYLLSC---SMDKTVRMWQVGCN----------QCL-NVFD--HHNYVTCVQ 315 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~----~~l~s~---s~d~~v~iwd~~~~----------~~~-~~~~--~~~~v~~~~ 315 (626)
.+ ..+.........|+++|+ +.|+.+ ..++.|.-|.+..+ +.+ ..+. .......|.
T Consensus 71 ---~~-~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~ 146 (347)
T 3das_A 71 ---VP-GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIA 146 (347)
T ss_dssp ---CT-TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEE
T ss_pred ---cC-ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCcccc
Confidence 00 011223456789999985 544432 23455665655431 111 1121 112346799
Q ss_pred EeeCCCCEEEEEeC-------------CCcEEEEeCCCC---------eEEEeccCCCCeEEEEEeeCCCEEEEEe-cCC
Q 006909 316 FNPIDDNYFISGSI-------------DGKVRIWGVCEK---------RVVDWADVRDVISAICYIPDGKGFIVGS-ITG 372 (626)
Q Consensus 316 ~~p~~~~~l~s~s~-------------dg~v~iwd~~~~---------~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg 372 (626)
|.| ++.++++.+. .|.|.-.+.... ..+...+++ ....++|+|+|...++-. .++
T Consensus 147 fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~ 224 (347)
T 3das_A 147 FGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDT 224 (347)
T ss_dssp ECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSS
T ss_pred CCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCC
Confidence 999 8887777542 244544554432 111222333 355789999876555432 222
Q ss_pred cEEEEEcCCCceeee-EEee----cc------ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee----eee
Q 006909 373 TCHFYKASGNDLKLE-KVDF----HD------RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH----KFK 437 (626)
Q Consensus 373 ~i~i~d~~~~~~~~~-~~~~----~~------~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~----~~~ 437 (626)
.-.|.-+..+..--. .... .. ....+......++|.. | ..++..-..+.|....+..... ...
T Consensus 225 ~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~~~~e~~ 302 (347)
T 3das_A 225 WDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAAAADPQAF 302 (347)
T ss_dssp CEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEESSCCEEE
T ss_pred CceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCceecceEEe
Confidence 222322222111000 0000 00 0000113567788874 3 4666666666676665432210 111
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEe
Q 006909 438 GLPKSGSQMSASFTTTGKHIISIG 461 (626)
Q Consensus 438 ~~~~~~~v~~~~~sp~g~~l~s~s 461 (626)
.......+..+...|||.++++..
T Consensus 303 l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 303 LEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp STTTSSCEEEEEEEETTEEEEEEC
T ss_pred ecCCCCCccEEEECCCCcEEEEEc
Confidence 112346788899999987666654
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.69 E-value=1.7 Score=42.10 Aligned_cols=172 Identities=10% Similarity=0.028 Sum_probs=85.8
Q ss_pred EEEeccCCCeeeEeecCCCCe--EEEEEeeCCCCEEEEEeCC--------CcEEEEeCCCCeEEEeccCCCC-eEEEEEe
Q 006909 291 VRMWQVGCNQCLNVFDHHNYV--TCVQFNPIDDNYFISGSID--------GKVRIWGVCEKRVVDWADVRDV-ISAICYI 359 (626)
Q Consensus 291 v~iwd~~~~~~~~~~~~~~~v--~~~~~~p~~~~~l~s~s~d--------g~v~iwd~~~~~~~~~~~~~~~-i~~i~~s 359 (626)
+.+||..+++-...-....+- .+++.. ++.+++.|+.+ ..+.+||..+.+-........+ ....+..
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 146 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS 146 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence 778888877653332211111 122222 66777777742 4589999988764443222111 1111222
Q ss_pred eCCCEEEEEec-C-----CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEe
Q 006909 360 PDGKGFIVGSI-T-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS-----KLRILD 428 (626)
Q Consensus 360 p~g~~l~~g~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg-----~i~iwd 428 (626)
.+++.++.|+. + ..+.+||..+....... .... ....-..+.+ ++ ++++.|+.++ .+.+||
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~----~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd 218 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA-PMQT----ARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYS 218 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC-CCSS----CCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC-CCCC----chhceEEEEE--CC-EEEEEeccCCCCccceEEEEE
Confidence 56677777776 2 46889998876543221 1111 0011122222 33 5777776554 578888
Q ss_pred CCcceeeeee-cCC-CCCeEEEEEcCCCCEEEEEeCCc--------------cEEEEECCCC
Q 006909 429 GVDVIHKFKG-LPK-SGSQMSASFTTTGKHIISIGDDC--------------RVYVWNYDEL 474 (626)
Q Consensus 429 ~~~~~~~~~~-~~~-~~~v~~~~~sp~g~~l~s~s~dg--------------~I~iwd~~~~ 474 (626)
..+..-.... .+. ......+. -+++.++.|+.++ .+.+||+.+.
T Consensus 219 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 219 ITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred CCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 7643322211 111 11122222 2567777776532 3667777654
No 325
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.51 E-value=0.61 Score=48.09 Aligned_cols=109 Identities=10% Similarity=0.099 Sum_probs=62.0
Q ss_pred CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc---------CCCCeEEEEEeeC---CCEEEEEec-----
Q 006909 308 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD---------VRDVISAICYIPD---GKGFIVGSI----- 370 (626)
Q Consensus 308 ~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---------~~~~i~~i~~sp~---g~~l~~g~~----- 370 (626)
-...+.|+|.| +++++++-...+.|++++..++....+.. .......|+|+|+ +..|++...
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34567999999 89877765444578888865554332111 2456779999995 556655543
Q ss_pred --------CCcEEEEEcCCCceee--eEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909 371 --------TGTCHFYKASGNDLKL--EKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 418 (626)
Q Consensus 371 --------dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~ 418 (626)
...|.-|+........ ....+.............|+|.||| .++++.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~ 161 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTI 161 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEE
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEE
Confidence 2356666654332111 1111111111122457899999998 454443
No 326
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.49 E-value=0.043 Score=49.73 Aligned_cols=101 Identities=11% Similarity=0.098 Sum_probs=64.3
Q ss_pred cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCC--------eEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006909 269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--------VTCVQFNPIDDNYFISGSIDGKVRIWGVCE 340 (626)
Q Consensus 269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~--------v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~ 340 (626)
..+.+++|+|++.|.+. .+|.+.-.+..+.+...-+..... -.++.|.| ++.+.++ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence 36779999999877777 777766666544222211111112 36888998 8887777 569998887643
Q ss_pred CeEEEec--------cCCCCeEEEEEeeCCCEEEEEecCCcEE
Q 006909 341 KRVVDWA--------DVRDVISAICYIPDGKGFIVGSITGTCH 375 (626)
Q Consensus 341 ~~~~~~~--------~~~~~i~~i~~sp~g~~l~~g~~dg~i~ 375 (626)
...-.+. ..=..+..|.+.|+|.+.++. |+.++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 2211111 111357899999999877766 77754
No 327
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.19 E-value=1.1 Score=43.93 Aligned_cols=92 Identities=7% Similarity=-0.047 Sum_probs=55.0
Q ss_pred eCCCcEEEeccCCCeeeEeec-----CCCCeEEEEEee-C-------CCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCC
Q 006909 286 SMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNP-I-------DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 352 (626)
Q Consensus 286 s~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p-~-------~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 352 (626)
+.||.|..++..+|.....+. ...++.. .-.| . .+..+++|+.+|.+...|+.+|+.+-......+
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence 578999999988875554442 2233332 1001 0 356788999999999999999998765544322
Q ss_pred e--------EEEEEe-----eCCCEEEEEecCCcEEEEE
Q 006909 353 I--------SAICYI-----PDGKGFIVGSITGTCHFYK 378 (626)
Q Consensus 353 i--------~~i~~s-----p~g~~l~~g~~dg~i~i~d 378 (626)
. .|.... -.+..++.+..+..+.+.+
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 1 111110 1235677777777777766
No 328
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.14 E-value=1.1 Score=52.04 Aligned_cols=204 Identities=12% Similarity=0.156 Sum_probs=116.3
Q ss_pred ccceEEEEEcCCCeEEEEeCCCcEEEeccCC-CeeeEeec-C----CCCeEEEEEeeCCCCEEEEEe-------CCCcEE
Q 006909 268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-H----HNYVTCVQFNPIDDNYFISGS-------IDGKVR 334 (626)
Q Consensus 268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~-~----~~~v~~~~~~p~~~~~l~s~s-------~dg~v~ 334 (626)
..+|.-=.|-....|+-.+. ..|..|++.. ..+.+.|. | ...|..-..++ +.+.++..+ ..|.+.
T Consensus 105 ~e~VvfWkWis~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQ 182 (1630)
T 1xi4_A 105 TDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQ 182 (1630)
T ss_pred CCCceEEEecCCCeeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceee
Confidence 34566667766664444433 4699999964 34445553 2 34566666777 666665433 347889
Q ss_pred EEeCCCCeEEEeccCCCCeEEEEEe--eC-CCEEEEEec---CCcEEEEEcCCC---ceee--eEEeeccccccCCCCeE
Q 006909 335 IWGVCEKRVVDWADVRDVISAICYI--PD-GKGFIVGSI---TGTCHFYKASGN---DLKL--EKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 335 iwd~~~~~~~~~~~~~~~i~~i~~s--p~-g~~l~~g~~---dg~i~i~d~~~~---~~~~--~~~~~~~~~~~~~~~i~ 403 (626)
+|....+....+.+|......+... +. ...++.+.. .+.++|.++... .... ......-......+-..
T Consensus 183 LyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv 262 (1630)
T 1xi4_A 183 LYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 262 (1630)
T ss_pred eeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcce
Confidence 9988776655555554443333221 11 122222222 368888888543 1111 11111111112234556
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
++..++.. ..+...+.-|.|.++|+.+....+...-...+|...+.+....-++.....|.|.--.++..
T Consensus 263 ~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 263 AMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred EEEecccc-CEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 77777775 48888899999999999988777766545556655554443334444556777766666554
No 329
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=94.76 E-value=0.00026 Score=53.06 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=42.5
Q ss_pred hhccccccceeeeeecc--ccccccccccccCCC--Cc---ccccChhhHHHHHHHHHHhhcc
Q 006909 79 ELEQDQMNECVVTLEGE--SNGFSQSVDKFENPF--PE---CKGVNIKKVKKLWKRIISMKKR 134 (626)
Q Consensus 79 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~ 134 (626)
.|+++|+++++++|.+| ..+.....+.|..++ +. ......++|+|+|..++|+|++
T Consensus 4 iLt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 4 VLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 47899999999999999 445666677776654 21 1123459999999999999998
No 330
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.71 E-value=6.4 Score=43.38 Aligned_cols=182 Identities=10% Similarity=0.129 Sum_probs=107.8
Q ss_pred ceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-----CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 006909 270 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344 (626)
Q Consensus 270 ~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~ 344 (626)
.|.++.. .++.|..++.+ -|..+|..+++...... ....|.++.... ++.+.+ |+.+ -|..++..+++..
T Consensus 104 ~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~ 178 (758)
T 3ott_A 104 DVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKFE 178 (758)
T ss_dssp CEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEE
T ss_pred eEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCceE
Confidence 4666654 45667777766 57888887665433211 235688888776 666555 4544 4778888777654
Q ss_pred EeccC------CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909 345 DWADV------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 418 (626)
Q Consensus 345 ~~~~~------~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~ 418 (626)
..... ...|.++...+++..|.+|+. +.+..|+..+....... ... ...|.++...++| .|.+|
T Consensus 179 ~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~-~l~------~~~i~~i~~d~~g--~lWig 248 (758)
T 3ott_A 179 GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTE-AFH------NNSIKSLALDGNG--DLLAG 248 (758)
T ss_dssp EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEE-EEE------EEEEEEEEECTTC--CEEEE
T ss_pred EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEecc-CCC------CCeEEEEEEcCCC--CEEEE
Confidence 33211 234788887777777777775 46888887765432211 111 1458888888776 34445
Q ss_pred eCCCcEEEEeCCcc-eeeeeec------CCCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909 419 SEDSKLRILDGVDV-IHKFKGL------PKSGSQMSASFTTTGKHIISIGDDCRVYVW 469 (626)
Q Consensus 419 s~dg~i~iwd~~~~-~~~~~~~------~~~~~v~~~~~sp~g~~l~s~s~dg~I~iw 469 (626)
+. +-+.+++..+. ...+... -....|.++....+|.+-+.. ..| +.++
T Consensus 249 T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT-~~G-l~~~ 303 (758)
T 3ott_A 249 TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT-DYG-ISLS 303 (758)
T ss_dssp ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE-SSS-EEEE
T ss_pred eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe-CCc-cccc
Confidence 54 45788886532 2222211 123458888888888765543 445 5444
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.11 E-value=4.4 Score=38.99 Aligned_cols=159 Identities=7% Similarity=0.001 Sum_probs=89.0
Q ss_pred CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe----CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCE
Q 006909 289 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 364 (626)
Q Consensus 289 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s----~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~ 364 (626)
..|+..++..++....... . +..|++ +++.|+-.. .+..|..-++.+.....+..+.. ..++|+++.
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~--~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPD--P--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp EEEEEEETTSCCCEEEECS--C--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTE
T ss_pred CeEEEEeCCCCcceEeecC--C--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCE
Confidence 4577777776654333222 2 236777 777777665 23456666776655554444432 456788988
Q ss_pred EEEEec-CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEEeCCcc-eeeeeecC
Q 006909 365 FIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--SKLRILDGVDV-IHKFKGLP 440 (626)
Q Consensus 365 l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d--g~i~iwd~~~~-~~~~~~~~ 440 (626)
|+-.+. ...|...++.+.... .+ .. .... ..+.|++. +|+-.... ..|..-++... ...+.
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~~--~l-~~-------~~~~-~~~~P~g~-~iy~t~~~~~~~I~~~~ldG~~~~~Lt--- 223 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSEA--LF-YD-------CNCY-KPVVLDDT-NVYYMDVNRDNAIVHVNINNPNPVVLT--- 223 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEEE--EE-EC-------SCEE-EEEEEETT-EEEEEEGGGTTEEEEECSSSCCCEECS---
T ss_pred EEEEeCCCceEEEEECCCCCEE--EE-eC-------CCcc-ceeeecCC-EEEEEEcCCCcEEEEEECCCCCeEEEe---
Confidence 886655 567888887765432 12 11 1222 23568874 55544433 35555555422 22221
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC--CccEEEEECCCC
Q 006909 441 KSGSQMSASFTTTGKHIISIGD--DCRVYVWNYDEL 474 (626)
Q Consensus 441 ~~~~v~~~~~sp~g~~l~s~s~--dg~I~iwd~~~~ 474 (626)
...+ ..|+|++++|+-++. .+.|..-+++..
T Consensus 224 -~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 224 -EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp -CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred -CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 1233 347888999887643 356777777653
No 332
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.09 E-value=1.4 Score=43.61 Aligned_cols=146 Identities=12% Similarity=0.132 Sum_probs=78.2
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-e-------ccCCCCeEEEEEeeC---CCEEEEEec-------
Q 006909 309 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-W-------ADVRDVISAICYIPD---GKGFIVGSI------- 370 (626)
Q Consensus 309 ~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~-------~~~~~~i~~i~~sp~---g~~l~~g~~------- 370 (626)
.....|+|.| +++.|+++...|.|++++... .... + .........|+++|+ +..|++...
T Consensus 18 ~~P~~i~~~p-dG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLP-DNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECS-TTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcC-CCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3568999999 888344456679999998543 2211 1 112345689999996 455555432
Q ss_pred -CCcEEEEEcCCCceee--eEEeecccc--ccCCCCeEEEEEcCCCCcEEEEEeC-------------CCcEEEEeCCcc
Q 006909 371 -TGTCHFYKASGNDLKL--EKVDFHDRK--KTSGNKITGIQFSRDESQRIMITSE-------------DSKLRILDGVDV 432 (626)
Q Consensus 371 -dg~i~i~d~~~~~~~~--~~~~~~~~~--~~~~~~i~~l~~s~~~~~~l~~~s~-------------dg~i~iwd~~~~ 432 (626)
...|..|++....... ....+.... .........|+|.||| .++++.+. .|.|.-++....
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 2356666665432111 111111111 0111234679999998 44444332 245666664321
Q ss_pred --------------eeeeeecCCCCCeEEEEEcC-CCCEEEE
Q 006909 433 --------------IHKFKGLPKSGSQMSASFTT-TGKHIIS 459 (626)
Q Consensus 433 --------------~~~~~~~~~~~~v~~~~~sp-~g~~l~s 459 (626)
...+.. .......++|+| +|++.++
T Consensus 175 ~p~~npf~~~~~~~~~i~a~--G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSY--GIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEE--CCSEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCcCCCCCCccEEEE--cCcCccceEEECCCCCEEEE
Confidence 112221 123567899999 5554443
No 333
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.00 E-value=4.1 Score=38.97 Aligned_cols=181 Identities=10% Similarity=0.078 Sum_probs=93.7
Q ss_pred eEEEEeC--CCcEEEeccCCCeeeEeec--C-CCCeEEEEEeeCCCCEEEEEeCC----CcEEEEeCCCCeEEEeccCCC
Q 006909 281 YLLSCSM--DKTVRMWQVGCNQCLNVFD--H-HNYVTCVQFNPIDDNYFISGSID----GKVRIWGVCEKRVVDWADVRD 351 (626)
Q Consensus 281 ~l~s~s~--d~~v~iwd~~~~~~~~~~~--~-~~~v~~~~~~p~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~ 351 (626)
.++.|+. ...+.+||..+++-...-. . ......+.+ ++.+++.|+.+ ..+.+||..+++-........
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 4445544 3568889988776543322 1 112222222 67778888755 568899998876444322211
Q ss_pred --CeEEEEEeeCCCEEEEEecC------CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC---
Q 006909 352 --VISAICYIPDGKGFIVGSIT------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE--- 420 (626)
Q Consensus 352 --~i~~i~~sp~g~~l~~g~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~--- 420 (626)
.-.+++ .-+++.++.|+.+ ..+.+||..+...... ..+... ...-..+.+ ++ .+++.|+.
T Consensus 91 ~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~----r~~~~~~~~--~~-~iyv~GG~~~~ 161 (306)
T 3ii7_A 91 PRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSMLTQ----RCSHGMVEA--NG-LIYVCGGSLGN 161 (306)
T ss_dssp CCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCSSC----CBSCEEEEE--TT-EEEEECCEESC
T ss_pred cccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCcCC----cceeEEEEE--CC-EEEEECCCCCC
Confidence 111222 2367777777765 4688999887654322 111110 011122222 33 56666653
Q ss_pred ------CCcEEEEeCCcceeeee-ecCCCCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECCCC
Q 006909 421 ------DSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL 474 (626)
Q Consensus 421 ------dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~~~ 474 (626)
-..+.+||..+..-... .......-.++.. -+++.++.|+.+ ..+.+||+.+.
T Consensus 162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp TTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 34588999764432221 1111111112222 256677776643 46889998875
No 334
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.96 E-value=4.7 Score=38.78 Aligned_cols=162 Identities=8% Similarity=-0.002 Sum_probs=87.4
Q ss_pred CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC--------------CcEEEEeCCCCeEEEeccCCCCe
Q 006909 288 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID--------------GKVRIWGVCEKRVVDWADVRDVI 353 (626)
Q Consensus 288 d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d--------------g~v~iwd~~~~~~~~~~~~~~~i 353 (626)
++.|...+.......+.... .+--+++ +++.|+-+... ..|+..++.+++...+....
T Consensus 36 ~~~ly~~~~dg~~~~~l~~~----~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~--- 107 (302)
T 3s25_A 36 NGRLYAMNIDGSNIHKLSND----TAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP--- 107 (302)
T ss_dssp TTEEEEEETTSCSCEEEEEE----EEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC---
T ss_pred CceEEEEcCCCCCCEEccCC----ceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC---
Confidence 45555555554333222221 1334577 77777766543 35777788776544433322
Q ss_pred EEEEEeeCCCEEEEEe--cCC--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909 354 SAICYIPDGKGFIVGS--ITG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 429 (626)
Q Consensus 354 ~~i~~sp~g~~l~~g~--~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~ 429 (626)
+..++++++.|+-.. .++ .|+..++.+... ..+... .+ ..+++++..+..+.....+|.+.++
T Consensus 108 -~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~--~~lt~~--------~~--~~~~~~g~~iy~t~~g~~~Iy~~~l 174 (302)
T 3s25_A 108 -CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK--KKIKNH--------YL--FTCNTSDRYFYYNNPKNGQLYRYDT 174 (302)
T ss_dssp -EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC--EEEESS--------CC--CCSEEETTEEEEECTTTCCEEEEET
T ss_pred -ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe--EEEeCC--------Cc--eEeeEECCEEEEEeCCCceEEEEEC
Confidence 236788999988776 334 455555554332 222211 11 3456777444444444678888886
Q ss_pred CcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC--ccEEEEECCCC
Q 006909 430 VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD--CRVYVWNYDEL 474 (626)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d--g~I~iwd~~~~ 474 (626)
.......... +... ..++|++.+|+-.... ..|..-++++.
T Consensus 175 ~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 175 ASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP 217 (302)
T ss_dssp TTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred CCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence 6433222121 2222 3456999998876544 35666677665
No 335
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.88 E-value=6.6 Score=40.25 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=23.1
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 006909 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 212 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~ 212 (626)
-...+.|+|.|+|+++++-...+.|++++..+
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~ 57 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPES 57 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCC
Confidence 34578999999999877754444677776543
No 336
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.84 E-value=2.8 Score=48.74 Aligned_cols=190 Identities=11% Similarity=0.124 Sum_probs=112.8
Q ss_pred cCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC-eEEEec-cC----C
Q 006909 277 SNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVDWA-DV----R 350 (626)
Q Consensus 277 s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~-~~----~ 350 (626)
+|...+++--...++.|+|+++.+.++.+....+|.-=.|- +.+.|+..+ +..|+-|++.+. .++... .| .
T Consensus 74 nP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~ 150 (1630)
T 1xi4_A 74 NPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAG 150 (1630)
T ss_pred CCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEec--CCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhccc
Confidence 45443333334688999999999999999888888877886 456665554 467999999642 222211 11 3
Q ss_pred CCeEEEEEeeCCCEEEEEe-------cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc--CCCCcEEEEEeC-
Q 006909 351 DVISAICYIPDGKGFIVGS-------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS--RDESQRIMITSE- 420 (626)
Q Consensus 351 ~~i~~i~~sp~g~~l~~g~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--~~~~~~l~~~s~- 420 (626)
..|..-..+++.++++..+ ..|.+.+|......... ..++ ...-..+... +.....+..+..
T Consensus 151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~----iegh----a~~F~~~~~~~~~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAVRG 222 (1630)
T ss_pred CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh----hhHh----HhhhheeccCCCCCCceEEEEEEec
Confidence 5577777788899887644 34788898876544321 1111 1111111111 111112221111
Q ss_pred --CCcEEEEeCCcc---eeeee---------ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC
Q 006909 421 --DSKLRILDGVDV---IHKFK---------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 477 (626)
Q Consensus 421 --dg~i~iwd~~~~---~~~~~---------~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 477 (626)
.++++|.++... ...+. ......-..++..++.-..+...+.-|.|+++|+.++...
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhh
Confidence 368888886432 11111 0111334456777888788888899999999999998443
No 337
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.74 E-value=3.1 Score=39.68 Aligned_cols=173 Identities=9% Similarity=0.035 Sum_probs=88.3
Q ss_pred CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCe---EEEeccCC--CCeEEE
Q 006909 289 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKR---VVDWADVR--DVISAI 356 (626)
Q Consensus 289 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d-----g~v~iwd~~~~~---~~~~~~~~--~~i~~i 356 (626)
..+.+||+.+++....-. ....-.+++. . ++.+++.|+.+ ..+.+||..+.+ -....... ..-.++
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 368889988776443322 1111112222 2 67778888765 468999988766 33322211 111122
Q ss_pred EEeeCCCEEEEEecC-----CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEE
Q 006909 357 CYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRI 426 (626)
Q Consensus 357 ~~sp~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-----g~i~i 426 (626)
+ ..+++.++.|+.+ ..+.+||+.+....... ...... ..-..+.+ ++ .+++.|+.+ ..+.+
T Consensus 109 ~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r----~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~ 179 (301)
T 2vpj_A 109 T-TLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG-DMQTAR----EGAGLVVA--SG-VIYCLGGYDGLNILNSVEK 179 (301)
T ss_dssp E-EETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE-ECSSCC----BSCEEEEE--TT-EEEEECCBCSSCBCCCEEE
T ss_pred E-EECCEEEEEcccCCCcccceEEEEcCCCCeEEECC-CCCCCc----ccceEEEE--CC-EEEEECCCCCCcccceEEE
Confidence 2 2367777777654 36888998876643321 111110 11122222 43 566776654 46888
Q ss_pred EeCCcceeeeee-cCC-CCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECCCC
Q 006909 427 LDGVDVIHKFKG-LPK-SGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL 474 (626)
Q Consensus 427 wd~~~~~~~~~~-~~~-~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~~~ 474 (626)
||..+..-.... .+. ......+. -+++.++.|+.+ ..+.+||+.+.
T Consensus 180 ~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 180 YDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 997643322211 111 11112222 256666777654 46788888765
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.47 E-value=3.3 Score=40.00 Aligned_cols=130 Identities=8% Similarity=0.076 Sum_probs=67.1
Q ss_pred EEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCC-------CcEEEEeCCCCeEEEeccCCCCe--EEEEEe
Q 006909 291 VRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-------GKVRIWGVCEKRVVDWADVRDVI--SAICYI 359 (626)
Q Consensus 291 v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d-------g~v~iwd~~~~~~~~~~~~~~~i--~~i~~s 359 (626)
+.+||..+++-...-. ....-.+++.. ++.+++.|+.+ ..+.+||..+.+-........+. .+++ .
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~ 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVI-S 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEE-E
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEE-E
Confidence 7778887766544322 11111122222 67777888764 24888998887654433222211 1222 2
Q ss_pred eCCCEEEEEec------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEe
Q 006909 360 PDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRILD 428 (626)
Q Consensus 360 p~g~~l~~g~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-----g~i~iwd 428 (626)
.+++.++.|+. -..+.+||+.+....... ..... ......+ .. ++ .+++.|+.+ ..+.+||
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~-~~-~~-~iyv~GG~~~~~~~~~~~~yd 228 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA-PMKTP----RSMFGVA-IH-KG-KIVIAGGVTEDGLSASVEAFD 228 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC-CCSSC----CBSCEEE-EE-TT-EEEEEEEEETTEEEEEEEEEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC-CCCCC----cccceEE-EE-CC-EEEEEcCcCCCCccceEEEEE
Confidence 56777777764 245889998876543221 11110 0111222 22 33 566776543 3567888
Q ss_pred CCc
Q 006909 429 GVD 431 (626)
Q Consensus 429 ~~~ 431 (626)
..+
T Consensus 229 ~~~ 231 (318)
T 2woz_A 229 LKT 231 (318)
T ss_dssp TTT
T ss_pred CCC
Confidence 764
No 339
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=93.37 E-value=3.2 Score=39.68 Aligned_cols=173 Identities=13% Similarity=0.165 Sum_probs=87.4
Q ss_pred CcEEEeccCCCeeeEeecCCC--CeEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCeEEEeccCCCC--eEEEEEe
Q 006909 289 KTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRDV--ISAICYI 359 (626)
Q Consensus 289 ~~v~iwd~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~~~~--i~~i~~s 359 (626)
..+.+||+.+++....-.... .-.+++.. ++.+++.|+.+ ..+.+||..+.+-........+ -.+++ .
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~ 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA-V 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-E
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE-E
Confidence 357888888765433321111 11122222 67777777755 3588999988765443322111 11222 2
Q ss_pred eCCCEEEEEecCC-----cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-------CcEEEE
Q 006909 360 PDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-------SKLRIL 427 (626)
Q Consensus 360 p~g~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-------g~i~iw 427 (626)
.+++.++.|+.++ .+.+||+.+....... ..... .... +++.. ++ .+++.|+.+ ..+.+|
T Consensus 107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~----r~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~y 178 (302)
T 2xn4_A 107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA-PMNTR----RSSV-GVGVV-GG-LLYAVGGYDVASRQCLSTVECY 178 (302)
T ss_dssp ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC-CCSSC----CBSC-EEEEE-TT-EEEEECCEETTTTEECCCEEEE
T ss_pred ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC-CCCCc----ccCc-eEEEE-CC-EEEEEeCCCCCCCccccEEEEE
Confidence 3677777787654 5778888776543221 11110 1111 22222 33 566666542 458889
Q ss_pred eCCcceeeeee-cCC-CCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECCCC
Q 006909 428 DGVDVIHKFKG-LPK-SGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL 474 (626)
Q Consensus 428 d~~~~~~~~~~-~~~-~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~~~ 474 (626)
|..+..-.... .+. ......+. -+++.++.|+.+ ..+.+||+.+.
T Consensus 179 d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 179 NATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred eCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 97643322211 111 11122222 256777777654 36888888765
No 340
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.04 E-value=2.6 Score=41.44 Aligned_cols=88 Identities=8% Similarity=0.122 Sum_probs=49.0
Q ss_pred CcEEEeccCCCeeeEeecCC-C--CeEEEEEeeCCCCEEEEEeCC-----------------------------------
Q 006909 289 KTVRMWQVGCNQCLNVFDHH-N--YVTCVQFNPIDDNYFISGSID----------------------------------- 330 (626)
Q Consensus 289 ~~v~iwd~~~~~~~~~~~~~-~--~v~~~~~~p~~~~~l~s~s~d----------------------------------- 330 (626)
..+.+||+.+.+-...-... . .-.++.. . ++.+++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence 46888999877654332211 1 1122222 3 77888888764
Q ss_pred ----CcEEEEeCCCCeEEEeccCC--CCe-EEEEEeeCCCEEEEEec------CCcEEEEEc
Q 006909 331 ----GKVRIWGVCEKRVVDWADVR--DVI-SAICYIPDGKGFIVGSI------TGTCHFYKA 379 (626)
Q Consensus 331 ----g~v~iwd~~~~~~~~~~~~~--~~i-~~i~~sp~g~~l~~g~~------dg~i~i~d~ 379 (626)
..+.+||..+.+-....... ... .+++. -+++.++.|+. ...+.+||+
T Consensus 164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence 47899999886644332221 111 22332 35666677654 345777876
No 341
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.68 E-value=7 Score=37.07 Aligned_cols=182 Identities=12% Similarity=0.024 Sum_probs=96.1
Q ss_pred ceEEEEEcCCCeEEEEeCCCcEEEeccCC-CeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CeEEEec
Q 006909 270 DVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWA 347 (626)
Q Consensus 270 ~V~~l~~s~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~ 347 (626)
.|..++......++. . ||.|..|-... +++-........|..++... .+.+.-. +|.|+.|-... +++-...
T Consensus 64 ~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 566666554444444 4 88888886543 22211112234677777653 4444455 99999997653 3322122
Q ss_pred cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909 348 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 427 (626)
Q Consensus 348 ~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw 427 (626)
.....|..++.-.+ ..+.-. +|.+..|-......... + ......|..++.... ..++. .||.|..|
T Consensus 138 ~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~----p---~~~~~~v~~i~~G~~--hs~al--~~G~v~~w 203 (282)
T 3qhy_B 138 EAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTV----P---AEAQSGVDDVAGGIF--HSLAL--KDGKVIAW 203 (282)
T ss_dssp GGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSC----C---GGGGSSEEEEEECSS--EEEEE--ETTEEEEE
T ss_pred cCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCC----c---eecCCCeEEEEecCC--EEEEE--ECCeEEEE
Confidence 22345666554332 333333 79999887654332111 0 001256888877654 24444 59999999
Q ss_pred eCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 428 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 428 d~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
=....-+.-........|..++-.... .++ -. ||.|+.|-....
T Consensus 204 G~n~~gqlg~p~~~~~~v~~i~~G~~h-~~a-l~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 204 GDNRYKQTTVPTEALSGVSAIASGEWY-SLA-LK-NGKVIAWGSSRT 247 (282)
T ss_dssp ECCTTSTTCCCGGGGSSCCEEEECSSC-EEE-EE-TTEEEEESTTCC
T ss_pred ECCCCCCCCCCcccCCCceEEEcCCCE-EEE-EE-CCEEEEecCCCC
Confidence 643211110001112346666654433 233 33 999999987653
No 342
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.13 E-value=10 Score=37.76 Aligned_cols=146 Identities=8% Similarity=-0.015 Sum_probs=70.8
Q ss_pred cceEEEEEcC---CCeEEEEeCCCcEEEeccCCCeeeEeec--------------------CCCCeEEEEEeeCCCCEEE
Q 006909 269 GDVLDLAWSN---SNYLLSCSMDKTVRMWQVGCNQCLNVFD--------------------HHNYVTCVQFNPIDDNYFI 325 (626)
Q Consensus 269 ~~V~~l~~s~---~~~l~s~s~d~~v~iwd~~~~~~~~~~~--------------------~~~~v~~~~~~p~~~~~l~ 325 (626)
..|.++++.| .+.|..+...+.|...+-. ++....+. ....+.+|.+.|.+.+.++
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 3578888875 4566666665655544322 22222211 1235789999874455555
Q ss_pred EEeCCCcEEEEeCCCCeEEEecc-C------------CCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEee
Q 006909 326 SGSIDGKVRIWGVCEKRVVDWAD-V------------RDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDF 391 (626)
Q Consensus 326 s~s~dg~v~iwd~~~~~~~~~~~-~------------~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 391 (626)
.+..++.|...+-....-..... . ...+.++.++|. ...++++...+ |...+-.... ...+.
T Consensus 194 vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~t--W~~~~- 269 (394)
T 3b7f_A 194 IGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRREGV--WKRIG- 269 (394)
T ss_dssp EEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETTTTE--EECGG-
T ss_pred EEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCCCCc--ceECC-
Confidence 55545545544322222111111 0 124889999985 45677776544 4444322222 11111
Q ss_pred ccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909 392 HDRKKTSGNKITGIQFSRDESQRIMITS 419 (626)
Q Consensus 392 ~~~~~~~~~~i~~l~~s~~~~~~l~~~s 419 (626)
..........+..+.+.|.....+.++.
T Consensus 270 ~~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 270 DAMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp GGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred CCCCCCCccceEEEEECCCCCCEEEEEe
Confidence 0000000134567888764334555553
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.62 E-value=8.8 Score=41.80 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=61.7
Q ss_pred CC-eEEEEeCC------CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCeEEEec
Q 006909 279 SN-YLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVDWA 347 (626)
Q Consensus 279 ~~-~l~s~s~d------~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~ 347 (626)
++ .++.|+.+ ..+.+||..+++-...-. ....-.+++... ++.+++.|+.++ .+.+||..+..-....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 44 55666543 357888988765443322 111112233323 778888888655 6999999887644432
Q ss_pred c------CCCCeEEEEEeeC-CCEEEEEecC-------CcEEEEEcCCCc
Q 006909 348 D------VRDVISAICYIPD-GKGFIVGSIT-------GTCHFYKASGND 383 (626)
Q Consensus 348 ~------~~~~i~~i~~sp~-g~~l~~g~~d-------g~i~i~d~~~~~ 383 (626)
. ......++.+..+ ++.++.|+.+ ..+.+||+.+..
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 2 2223344555555 6677777652 468899998876
No 344
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=90.30 E-value=13 Score=35.55 Aligned_cols=180 Identities=9% Similarity=0.090 Sum_probs=91.9
Q ss_pred eEEEEeCCCcEEEeccCCCeeeEe-ecCC-CCeEEEEEeeCCCCEEEEEeC----C-------CcEEEEeCCCCeEEEec
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCLNV-FDHH-NYVTCVQFNPIDDNYFISGSI----D-------GKVRIWGVCEKRVVDWA 347 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~~~-~~~~-~~v~~~~~~p~~~~~l~s~s~----d-------g~v~iwd~~~~~~~~~~ 347 (626)
.++.|+ ..+.+||..+++-... +... .......... ++.+++.|+. + ..+.+||..+++-....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344555 5689999988775431 1111 1222222233 7788888874 1 12778898887654433
Q ss_pred cCCCCe--EEEEEeeCCCEEEEEecC--------CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909 348 DVRDVI--SAICYIPDGKGFIVGSIT--------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 417 (626)
Q Consensus 348 ~~~~~i--~~i~~sp~g~~l~~g~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~ 417 (626)
....+- .+++. -+++.++.|+.+ ..+.+||..+....... .+... ...- +++. -++ .+++.
T Consensus 84 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~----r~~~-~~~~-~~~-~iyv~ 154 (315)
T 4asc_A 84 PLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD-PLPYV----VYGH-TVLS-HMD-LVYVI 154 (315)
T ss_dssp CBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC-CCSSC----CBSC-EEEE-ETT-EEEEE
T ss_pred CCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC-CCCCc----ccce-eEEE-ECC-EEEEE
Confidence 222211 12222 266666777642 46889998876543211 11110 0111 2222 233 56667
Q ss_pred EeC-C-----CcEEEEeCCcceeeeee-cCC-CCCeEEEEEcCCCCEEEEEeCCc-----cEEEEECCCC
Q 006909 418 TSE-D-----SKLRILDGVDVIHKFKG-LPK-SGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDEL 474 (626)
Q Consensus 418 ~s~-d-----g~i~iwd~~~~~~~~~~-~~~-~~~v~~~~~sp~g~~l~s~s~dg-----~I~iwd~~~~ 474 (626)
|+. + ..+.+||..+..-.... .+. ......+. -+++.++.|+.++ .+.+||+.+.
T Consensus 155 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 155 GGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp CCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred eCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCC
Confidence 665 2 46889997643322111 111 11112222 2667777777543 5888888765
No 345
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=89.94 E-value=7.9 Score=37.00 Aligned_cols=172 Identities=10% Similarity=0.045 Sum_probs=87.6
Q ss_pred CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeC----C-----CcEEEEeCCCCeEEEeccCC---CCeE
Q 006909 289 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSI----D-----GKVRIWGVCEKRVVDWADVR---DVIS 354 (626)
Q Consensus 289 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~----d-----g~v~iwd~~~~~~~~~~~~~---~~i~ 354 (626)
..+.+||..+++....-. ....-.+++.. ++.+++.|+. + ..+.+||..+.+-....... ....
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 357888887765443321 11111122222 6677777765 2 46889999887654433221 1122
Q ss_pred EEEEeeCCCEEEEEecC-----CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-----CcE
Q 006909 355 AICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKL 424 (626)
Q Consensus 355 ~i~~sp~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-----g~i 424 (626)
++. -+++.++.|+.+ ..+.+||..+....... ..... ...-..+.+ ++ .+++.|+.+ ..+
T Consensus 117 ~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~ 186 (308)
T 1zgk_A 117 VGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PMLTR----RIGVGVAVL--NR-LLYAVGGFDGTNRLNSA 186 (308)
T ss_dssp EEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCSSC----CBSCEEEEE--TT-EEEEECCBCSSCBCCCE
T ss_pred EEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCCcc----ccceEEEEE--CC-EEEEEeCCCCCCcCceE
Confidence 222 367777777644 36888998876543221 11110 111122222 33 566776654 468
Q ss_pred EEEeCCcceeeeee-cCC-CCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECCCC
Q 006909 425 RILDGVDVIHKFKG-LPK-SGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL 474 (626)
Q Consensus 425 ~iwd~~~~~~~~~~-~~~-~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~~~ 474 (626)
.+||..+..-.... .+. ......+.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 187 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 187 ECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 88987643322111 111 111222222 56677777654 46888888765
No 346
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=89.27 E-value=0.17 Score=31.42 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=15.7
Q ss_pred CCCCCCcceeeeccCCcc
Q 006909 3 SSDEGVDDVFFDSTDCLS 20 (626)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (626)
.|||+||..||||.+-|.
T Consensus 12 ~SdEDed~EfFDA~efIT 29 (47)
T 2rr3_B 12 MSDEDDENEFFDAPEIIT 29 (47)
T ss_dssp SCCCCCSSCCBCCCSSCS
T ss_pred ccccccccccccccceeE
Confidence 479999999999988776
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.19 E-value=9.5 Score=41.54 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=80.8
Q ss_pred CCCeEEEEeCC----CcEEEeccCCCeeeEee-c-------CC-CCeEEEEEeeCCCCEEEEEeCC------CcEEEEeC
Q 006909 278 NSNYLLSCSMD----KTVRMWQVGCNQCLNVF-D-------HH-NYVTCVQFNPIDDNYFISGSID------GKVRIWGV 338 (626)
Q Consensus 278 ~~~~l~s~s~d----~~v~iwd~~~~~~~~~~-~-------~~-~~v~~~~~~p~~~~~l~s~s~d------g~v~iwd~ 338 (626)
.+..++.|+.+ ..+.+||..+++....- . .. ....++.+.. ++.+++.|+.+ ..+.+||.
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEET
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeC
Confidence 33466666643 46888888877544332 1 11 1223333322 45677777654 35788998
Q ss_pred CCCeEEEeccCC--CCeEEEEEeeCCCEEEEEecCC--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909 339 CEKRVVDWADVR--DVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 414 (626)
Q Consensus 339 ~~~~~~~~~~~~--~~i~~i~~sp~g~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~ 414 (626)
.+..-....... ..-.+++...+++.++.|+.++ .+.+||..+...... ...+........-..+.+..+...+
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~--~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDV--TPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEEC--CCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEc--cCCCCCCCcccceeEEEEeCCCCEE
Confidence 886544332221 1122333334788888887765 689999987664322 1111011111222335555542256
Q ss_pred EEEEeC--C-----CcEEEEeCCcc
Q 006909 415 IMITSE--D-----SKLRILDGVDV 432 (626)
Q Consensus 415 l~~~s~--d-----g~i~iwd~~~~ 432 (626)
++.|+. + +.+.+||..+.
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTT
T ss_pred EEECCcCCCCCeeeCcEEEEEccCC
Confidence 777665 2 46888886543
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=87.96 E-value=1.8 Score=44.95 Aligned_cols=97 Identities=13% Similarity=0.036 Sum_probs=65.4
Q ss_pred cEEEEeCCC-----CeEEEeccCCCCeEEEEEeeCCCEEEEEec-CCcEEEEEcCCCcee-------ee-EEeecccccc
Q 006909 332 KVRIWGVCE-----KRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLK-------LE-KVDFHDRKKT 397 (626)
Q Consensus 332 ~v~iwd~~~-----~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg~i~i~d~~~~~~~-------~~-~~~~~~~~~~ 397 (626)
.|.+.|.+. .....+.........+.++|||+++++++. +.++.++|+...... .. .+..+ ..
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae---~e 375 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE---PE 375 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC---CB
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee---cc
Confidence 467777765 234455566677788999999999988664 679999998742110 00 01001 11
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc
Q 006909 398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 432 (626)
Q Consensus 398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~ 432 (626)
.+-.....+|.++| ....+-.-|..|.-|++...
T Consensus 376 ~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 LGLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHH
T ss_pred CCCcccEEEECCCC-ceEeeeeecceEEEEeccHH
Confidence 23567789999998 56666678999999997643
No 349
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.79 E-value=23 Score=35.13 Aligned_cols=155 Identities=9% Similarity=-0.015 Sum_probs=78.3
Q ss_pred cceEEEEEcC--CCeEEEEeCCC----cEEEeccCCCeeeEeec---------------CCCCeEEEEEeeCC-CCEEEE
Q 006909 269 GDVLDLAWSN--SNYLLSCSMDK----TVRMWQVGCNQCLNVFD---------------HHNYVTCVQFNPID-DNYFIS 326 (626)
Q Consensus 269 ~~V~~l~~s~--~~~l~s~s~d~----~v~iwd~~~~~~~~~~~---------------~~~~v~~~~~~p~~-~~~l~s 326 (626)
..|.+|++.| .+.|..++..+ .|...+ ..++.-..+. ....|.++++.|.+ .+.+..
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4689999988 55666665555 344332 2222222211 11247788998744 566666
Q ss_pred EeCCCcEEEEeCCCCeEEEecc-------------------CCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceee
Q 006909 327 GSIDGKVRIWGVCEKRVVDWAD-------------------VRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKL 386 (626)
Q Consensus 327 ~s~dg~v~iwd~~~~~~~~~~~-------------------~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~ 386 (626)
+...+.|...+-....-..... ....+.+|.++|. ...++++..++.|...+-.+.. .
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~t--W 211 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTD--W 211 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSS--C
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCC--c
Confidence 6666666555433222111111 1235788999883 4566666655544433222211 1
Q ss_pred eEEee--ccc-cc----cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909 387 EKVDF--HDR-KK----TSGNKITGIQFSRDESQRIMITSEDSKLRIL 427 (626)
Q Consensus 387 ~~~~~--~~~-~~----~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw 427 (626)
..... ... .. .....+.++.+.|..+..+.++...+ |...
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 11110 000 00 00135889999987445677776555 4443
No 350
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=87.56 E-value=20 Score=34.21 Aligned_cols=173 Identities=10% Similarity=0.094 Sum_probs=86.4
Q ss_pred cEEEeccCCCeeeEee-c--CCCCeEEEEEeeCCCCEEEEEeC----CC-------cEEEEeCCCCeEEEeccCCCC--e
Q 006909 290 TVRMWQVGCNQCLNVF-D--HHNYVTCVQFNPIDDNYFISGSI----DG-------KVRIWGVCEKRVVDWADVRDV--I 353 (626)
Q Consensus 290 ~v~iwd~~~~~~~~~~-~--~~~~v~~~~~~p~~~~~l~s~s~----dg-------~v~iwd~~~~~~~~~~~~~~~--i 353 (626)
.+..||..+++....- . ....-.+++ .. ++.+++.|+. ++ .+.+||..+.+-........+ -
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIV-TQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEE-CS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred ceEEECCCCCceecccCCccCCccceEEE-EE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 3788999887754421 1 112222332 33 7788888873 12 177889887765543322211 1
Q ss_pred EEEEEeeCCCEEEEEecC-------CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC------
Q 006909 354 SAICYIPDGKGFIVGSIT-------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE------ 420 (626)
Q Consensus 354 ~~i~~sp~g~~l~~g~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~------ 420 (626)
.+++. -+++.++.|+.+ ..+.+||..+....... ...... ..- +++. .++ .+++.|+.
T Consensus 103 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r----~~~-~~~~-~~~-~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 103 FGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKV----YGH-NVIS-HNG-MIYCLGGKTDDKKC 173 (318)
T ss_dssp CEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCE----ESC-EEEE-ETT-EEEEECCEESSSCB
T ss_pred cceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcc----ccc-EEEE-ECC-EEEEEcCCCCCCCc
Confidence 12222 267777777764 25788888776543221 111100 111 1222 243 56666653
Q ss_pred CCcEEEEeCCcceeeee-ecCCCCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECCCC
Q 006909 421 DSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL 474 (626)
Q Consensus 421 dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~~~ 474 (626)
-..+.+||..+..-... .......-.+++. -+++.++.|+.+ ..+.+||+.+.
T Consensus 174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred cceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 24689999765432221 1111111112222 256777777643 35778888765
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.72 E-value=12 Score=38.23 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=62.1
Q ss_pred CCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccc-----cCCCCeEEEEEcCC---CCcEEEEEeC-
Q 006909 351 DVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-----TSGNKITGIQFSRD---ESQRIMITSE- 420 (626)
Q Consensus 351 ~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~i~~l~~s~~---~~~~l~~~s~- 420 (626)
.....|+|.|+|. .|+++...|.|++++..+............... ........|+|+|+ +..+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3456899999996 577778899999997543321111111111111 11357889999996 2133333322
Q ss_pred -C----------CcEEEEeCC----------cceeeeee--cCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909 421 -D----------SKLRILDGV----------DVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD 463 (626)
Q Consensus 421 -d----------g~i~iwd~~----------~~~~~~~~--~~~~~~v~~~~~sp~g~~l~s~s~d 463 (626)
+ ..|.-|... +....+.. .........+.|.|||.+.++.++.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 133334321 11122221 1223456789999999888877653
No 352
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=84.19 E-value=34 Score=33.78 Aligned_cols=167 Identities=5% Similarity=0.038 Sum_probs=98.5
Q ss_pred cEEEeccCCC--eeeEeec-------CCCCeEEEEEeeC--C----CCEEEEEe-CCCcEEEEeCCCCeEEEecc----C
Q 006909 290 TVRMWQVGCN--QCLNVFD-------HHNYVTCVQFNPI--D----DNYFISGS-IDGKVRIWGVCEKRVVDWAD----V 349 (626)
Q Consensus 290 ~v~iwd~~~~--~~~~~~~-------~~~~v~~~~~~p~--~----~~~l~s~s-~dg~v~iwd~~~~~~~~~~~----~ 349 (626)
.|.+||+.++ +.++.+. ....+..+++... . +.++..+. ..+.|.++|+.+++..+... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5888999999 8888774 2346788888721 1 33444433 45779999999887655331 0
Q ss_pred ---------------CCCeEEEEEeeC----CCEEEEEecCCcEEEEEcC-----CCceeeeEEeeccccccCCCCeEEE
Q 006909 350 ---------------RDVISAICYIPD----GKGFIVGSITGTCHFYKAS-----GNDLKLEKVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 350 ---------------~~~i~~i~~sp~----g~~l~~g~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~~~~~i~~l 405 (626)
...+..|+++|+ ++.|+-....+. ++|.+. .... ...+...+.+ .....-..+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~-~~~v~~~G~k-g~~s~~~~~ 280 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGG-KLNPELLGNR-GKYNDAIAL 280 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTC-CCCCEEEEEC-CTTCCEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcch-hhceEEeeec-CCCCCcceE
Confidence 246778888887 677777665542 334332 2221 1112222211 111234456
Q ss_pred EEc-CCCCcEEEEEeCCCcEEEEeCCc-ce-----eeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909 406 QFS-RDESQRIMITSEDSKLRILDGVD-VI-----HKFKGLPKSGSQMSASFTTTGKHIISI 460 (626)
Q Consensus 406 ~~s-~~~~~~l~~~s~dg~i~iwd~~~-~~-----~~~~~~~~~~~v~~~~~sp~g~~l~s~ 460 (626)
++. .+| .++++--..+.|..|+... .. ..+.....-..+..+.+.++|.+.+..
T Consensus 281 ~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 281 AYDPKTK-VIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EECTTTC-EEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEeCCCC-eEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 675 555 6777778889999999765 22 333332234456777776666554544
No 353
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=83.50 E-value=1.1 Score=43.80 Aligned_cols=109 Identities=7% Similarity=0.016 Sum_probs=68.8
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEeecCC--CCeEEEEEee-CCCCEEEEE--eCCCcEEEEeCCCCeEEEeccC----
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNP-IDDNYFISG--SIDGKVRIWGVCEKRVVDWADV---- 349 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~p-~~~~~l~s~--s~dg~v~iwd~~~~~~~~~~~~---- 349 (626)
++.++.++.||.|.-.|..+|+....+... .++....-.. ..+..++.+ +.||.|..++..+|...-....
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 458999999999999999999999988643 2332221111 012234433 5799999999887754321111
Q ss_pred -CCCeEE---EEE-e----eCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909 350 -RDVISA---ICY-I----PDGKGFIVGSITGTCHFYKASGNDLKLE 387 (626)
Q Consensus 350 -~~~i~~---i~~-s----p~g~~l~~g~~dg~i~i~d~~~~~~~~~ 387 (626)
..++.. ..+ . ..+..+++|+.+|.+...|+.+++....
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 111111 000 0 1455788999999999999999887544
No 354
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.06 E-value=35 Score=32.98 Aligned_cols=148 Identities=8% Similarity=0.084 Sum_probs=88.6
Q ss_pred CCeEEEEeCCCcEEEeccCCCe-------eeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC--CCe-------
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQ-------CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC--EKR------- 342 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~-------~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~--~~~------- 342 (626)
+.+++.++.+|.|+.-.+.... ....+...+.+..+.... ....++..+..|.+..+... .-.
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 4589999999999988764322 112233455666666655 56778888889998877765 211
Q ss_pred --EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee----EEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909 343 --VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE----KVDFHDRKKTSGNKITGIQFSRDESQRIM 416 (626)
Q Consensus 343 --~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~i~~l~~s~~~~~~l~ 416 (626)
..........|.++...+.+..+++.+..|.++.-.+........ ...+. .....+.+..+....+. ..++
T Consensus 188 Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~--l~~~~d~lv~~~~~~~~-~~i~ 264 (327)
T 3uc1_A 188 GVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVM--YDRRRGRLVGALIVDDD-SELY 264 (327)
T ss_dssp CEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSC--CCTTTCSEEEEEEECTT-CEEE
T ss_pred CeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEE--ecCCCCeEEEEEEeCCC-ccEE
Confidence 111122345677777666777899999999998887654332110 11111 11112345555444333 4677
Q ss_pred EEeCCCcEEEEeCC
Q 006909 417 ITSEDSKLRILDGV 430 (626)
Q Consensus 417 ~~s~dg~i~iwd~~ 430 (626)
..+.+|.+.-++..
T Consensus 265 l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 265 AVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEGGGCEEEEEGG
T ss_pred EEcCCCeEEEEehh
Confidence 77777877777643
No 355
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=82.49 E-value=50 Score=34.42 Aligned_cols=193 Identities=13% Similarity=0.133 Sum_probs=104.9
Q ss_pred eEEEEe-CCCcEEEeccCCCeeeEeec--CCCCeEEEEEe--eCCCCEEEEEeC-------CCcE---------EE---E
Q 006909 281 YLLSCS-MDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFN--PIDDNYFISGSI-------DGKV---------RI---W 336 (626)
Q Consensus 281 ~l~s~s-~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~--p~~~~~l~s~s~-------dg~v---------~i---w 336 (626)
+|+.-. .+..|-.-++...++-+.+. ....+.+++|. | +..+++.++. ||.. .+ .
T Consensus 144 ylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~i 222 (638)
T 3sbq_A 144 YLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAI 222 (638)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEE
T ss_pred EEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEEEEE
Confidence 444443 44567777777777766554 55678888886 5 6667777664 2221 11 1
Q ss_pred eCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC---------------cEEEEEcCC-------Ccee------eeE
Q 006909 337 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---------------TCHFYKASG-------NDLK------LEK 388 (626)
Q Consensus 337 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg---------------~i~i~d~~~-------~~~~------~~~ 388 (626)
|..+.++.-..........+...++|++.++.+.+. .+.++++.. ++.. ...
T Consensus 223 D~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~V 302 (638)
T 3sbq_A 223 DAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPV 302 (638)
T ss_dssp ETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred cCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeE
Confidence 222222111111122333445567777777765432 355565421 1100 001
Q ss_pred Eeecccc--c-------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee-----------eee-ecCCCCCeEE
Q 006909 389 VDFHDRK--K-------TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----------KFK-GLPKSGSQMS 447 (626)
Q Consensus 389 ~~~~~~~--~-------~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-----------~~~-~~~~~~~v~~ 447 (626)
+....+. . .-....-++..+|||...++++-.+.++.++|..+... ... ...-.-....
T Consensus 303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlH 382 (638)
T 3sbq_A 303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLH 382 (638)
T ss_dssp EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEE
T ss_pred EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccE
Confidence 1110000 0 01134456889999966666667789999999763211 111 1113345677
Q ss_pred EEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 448 ASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 448 ~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.+|.++|.-..|---|..|.-|++...
T Consensus 383 t~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 383 TTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred EEECCCCceEeeeeecceEEEEeccHH
Confidence 899999955556668999999999753
No 356
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=80.59 E-value=42 Score=32.31 Aligned_cols=198 Identities=9% Similarity=0.056 Sum_probs=106.9
Q ss_pred cCCCeEEEEeCCCcEEEe---ccCC------CeeeEe---ecCCCCeEEEEEeeC--CCCEEEEEeCCCcEEEEeCCC--
Q 006909 277 SNSNYLLSCSMDKTVRMW---QVGC------NQCLNV---FDHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGVCE-- 340 (626)
Q Consensus 277 s~~~~l~s~s~d~~v~iw---d~~~------~~~~~~---~~~~~~v~~~~~~p~--~~~~l~s~s~dg~v~iwd~~~-- 340 (626)
+....|+..+..|.+.-. ++.. |..+.. +.....|.++...+. ++.+++.++.+|.++-..+..
T Consensus 48 ~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~ 127 (323)
T 1wp5_A 48 NTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYK 127 (323)
T ss_dssp ETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGC
T ss_pred CCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhh
Confidence 344566666777765444 4422 232211 234455666543331 256789999999999887631
Q ss_pred ------CeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCc
Q 006909 341 ------KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQ 413 (626)
Q Consensus 341 ------~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (626)
+.........+.+..+........++..+.+|.+..+....-...-. ...........+..|.++...+++..
T Consensus 128 ~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~ 207 (323)
T 1wp5_A 128 AQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDE 207 (323)
T ss_dssp CSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTC
T ss_pred hccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCc
Confidence 11111112235555555555666788899999998888753211100 00000111112356777655444422
Q ss_pred EEEEEeCCCcEEEEeCCc---------ceeeeeec-CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 414 RIMITSEDSKLRILDGVD---------VIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 414 ~l~~~s~dg~i~iwd~~~---------~~~~~~~~-~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.+++.+..|..+..++.. ....+... .....+..+....++..++..+..|.+....+..-
T Consensus 208 ~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~i 278 (323)
T 1wp5_A 208 SIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDI 278 (323)
T ss_dssp EEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGGS
T ss_pred EEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhhc
Confidence 688888888888877542 12222211 12224554433344556677777888877777663
No 357
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=79.54 E-value=47 Score=32.15 Aligned_cols=88 Identities=11% Similarity=0.145 Sum_probs=46.1
Q ss_pred eEEEEeC-CCcEEEeccCC--CeeeEeecCC---CCeEEEEEeeCCCCEEEEEeC-C---------CcEEEEeCCCCeEE
Q 006909 281 YLLSCSM-DKTVRMWQVGC--NQCLNVFDHH---NYVTCVQFNPIDDNYFISGSI-D---------GKVRIWGVCEKRVV 344 (626)
Q Consensus 281 ~l~s~s~-d~~v~iwd~~~--~~~~~~~~~~---~~v~~~~~~p~~~~~l~s~s~-d---------g~v~iwd~~~~~~~ 344 (626)
.++.|+. ...+.++|+.+ .+....-... ..-.+++.. ++.+++.|+. + ..+.+||..+.+-.
T Consensus 22 iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~ 99 (357)
T 2uvk_A 22 VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV 99 (357)
T ss_dssp EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence 4455543 35688888864 3322221111 111222222 6777777776 2 46889999887644
Q ss_pred EeccCC---CCeEEEEEeeCCCEEEEEecC
Q 006909 345 DWADVR---DVISAICYIPDGKGFIVGSIT 371 (626)
Q Consensus 345 ~~~~~~---~~i~~i~~sp~g~~l~~g~~d 371 (626)
...... ..-.+++. .+++.++.|+.+
T Consensus 100 ~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 100 KLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp ECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred ECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 432221 11122222 677788888754
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=79.14 E-value=59 Score=33.13 Aligned_cols=30 Identities=23% Similarity=0.092 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCC-EEEEEeCCCcEEEEEcC
Q 006909 182 GCIWTLKFSPDGR-YLASGGEDGVVRIWHVT 211 (626)
Q Consensus 182 ~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~ 211 (626)
..-+.|+|.|||. .|+.+...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 3568999999996 34445678999988643
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.15 E-value=41 Score=37.99 Aligned_cols=38 Identities=16% Similarity=0.468 Sum_probs=31.6
Q ss_pred cceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec
Q 006909 269 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD 306 (626)
Q Consensus 269 ~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~ 306 (626)
..+.+++..++. ++++-+.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356677776654 89999999999999999999988764
No 360
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=74.83 E-value=67 Score=31.56 Aligned_cols=204 Identities=13% Similarity=0.115 Sum_probs=108.4
Q ss_pred ceEEEEEcC-CCeEEEEeCCCcEEE---eccCC------CeeeEe---ecCCCCeEEEEEee--CCCCEEEEEeCCCcEE
Q 006909 270 DVLDLAWSN-SNYLLSCSMDKTVRM---WQVGC------NQCLNV---FDHHNYVTCVQFNP--IDDNYFISGSIDGKVR 334 (626)
Q Consensus 270 ~V~~l~~s~-~~~l~s~s~d~~v~i---wd~~~------~~~~~~---~~~~~~v~~~~~~p--~~~~~l~s~s~dg~v~ 334 (626)
.+..+.... ...|+..+..|.+.- |++.. |..+.. +.....|.++...+ ..+.+|+.++..|.++
T Consensus 47 ~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vK 126 (370)
T 3l6v_A 47 FIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVK 126 (370)
T ss_dssp CEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEE
T ss_pred EEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEE
Confidence 344443333 345666666666554 34422 222211 23445666665432 1356899999999999
Q ss_pred EEeCCC-------CeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeE-EeeccccccCCCCeEEEE
Q 006909 335 IWGVCE-------KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-VDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 335 iwd~~~-------~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~i~~l~ 406 (626)
-..+.. +.........+.+..+........++..+..|.+..+....-...-.. .............|.++.
T Consensus 127 rt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~ 206 (370)
T 3l6v_A 127 KTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLI 206 (370)
T ss_dssp EEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEE
T ss_pred EeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEE
Confidence 887532 111111122445555555556668888899998888876432111000 000000111234565555
Q ss_pred EcCC----------------------------------CCcEEEEEeCCCcEEEEeCCc---------ceeeeeecCCCC
Q 006909 407 FSRD----------------------------------ESQRIMITSEDSKLRILDGVD---------VIHKFKGLPKSG 443 (626)
Q Consensus 407 ~s~~----------------------------------~~~~l~~~s~dg~i~iwd~~~---------~~~~~~~~~~~~ 443 (626)
..+. ....+++.+..|..+...+.. .+..++.....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g 286 (370)
T 3l6v_A 207 VSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNG 286 (370)
T ss_dssp EECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTC
T ss_pred EeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCC
Confidence 4441 225788999999998887542 222233322334
Q ss_pred CeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 444 SQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 444 ~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
.+..+.+..+...|+..+..|.+.-..+..
T Consensus 287 ~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 287 KLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp SEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred cEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 565554444555666667778777777665
No 361
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=73.17 E-value=62 Score=30.35 Aligned_cols=182 Identities=13% Similarity=0.061 Sum_probs=95.3
Q ss_pred ceEEEEEcCCCeEEEEeCCCcEEEeccCCC-eeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CeEEEec
Q 006909 270 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWA 347 (626)
Q Consensus 270 ~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~ 347 (626)
.|..++......++. . ||.|..|-.... +.-........|..++... ...++. . ||.|+.|-... +++-...
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 566666544333333 4 889999865432 2111112234577777643 333333 5 89999997653 2221112
Q ss_pred cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909 348 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 427 (626)
Q Consensus 348 ~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw 427 (626)
.....|..++...+ ..++-+ +|.++.|-......... .......|..++.... +.++-. ||.|..|
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~-------~~~~~~~i~~i~~G~~---~~~~l~-~G~v~~w 164 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTV-------PAEAQSGVTALDGGVY---TALAVK-NGGVIAW 164 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSC-------CGGGGSSEEEEEECSS---EEEEEE-TTEEEEE
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCC-------CccCCCCeEEEEcccC---EEEEEE-CCEEEEe
Confidence 22345666665433 344445 99999997654332111 0011256777776554 333334 7999999
Q ss_pred eCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 428 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 428 d~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
-....-+.-........|..++.... +.+.- .||.|+.|-....
T Consensus 165 G~n~~gqlg~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 165 GDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRY 208 (282)
T ss_dssp ECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTT
T ss_pred cCCCCCCCCCceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCC
Confidence 64421111000011245666665433 33333 5999999987653
No 362
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=71.84 E-value=1.2e+02 Score=33.41 Aligned_cols=160 Identities=11% Similarity=0.104 Sum_probs=81.5
Q ss_pred CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc-------CCCCeEEEEEeeC-CCEEEEEecCCc----EE
Q 006909 308 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-------VRDVISAICYIPD-GKGFIVGSITGT----CH 375 (626)
Q Consensus 308 ~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-------~~~~i~~i~~sp~-g~~l~~g~~dg~----i~ 375 (626)
...|.+|+++|.+...++.+...+.|...+=....-..... ....+.+|+++|. ...++++..... -.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 46899999999667788888877777655433222222222 1246999999984 345555543321 34
Q ss_pred EEEcCCCceeeeEEeeccccc---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE-eCCcceeeeeec----CCCCCeEE
Q 006909 376 FYKASGNDLKLEKVDFHDRKK---TSGNKITGIQFSRDESQRIMITSEDSKLRIL-DGVDVIHKFKGL----PKSGSQMS 447 (626)
Q Consensus 376 i~d~~~~~~~~~~~~~~~~~~---~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw-d~~~~~~~~~~~----~~~~~v~~ 447 (626)
||.....-............. .....+..+++.|..+..++++...+.|..= |....-...... .....+..
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~ 173 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTS 173 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCEEE
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCeEE
Confidence 444433333233222110000 0001356788888655567777644443321 211111111110 11245778
Q ss_pred EEEcCC-CCEEEEEeCC-ccEE
Q 006909 448 ASFTTT-GKHIISIGDD-CRVY 467 (626)
Q Consensus 448 ~~~sp~-g~~l~s~s~d-g~I~ 467 (626)
+.++|. +..|+.+..+ +.|+
T Consensus 174 i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 174 VIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEECTTSTTCEEEEESSTTCEE
T ss_pred EEECCCCCCEEEEEEcCCCeEE
Confidence 888884 4456555544 4443
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.57 E-value=49 Score=37.37 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=31.0
Q ss_pred CeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEec
Q 006909 310 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA 347 (626)
Q Consensus 310 ~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 347 (626)
.+.+++..+ +..++++.+.|+++|+|++.+++++...
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 466777776 7889999999999999999999887643
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=71.32 E-value=67 Score=30.02 Aligned_cols=161 Identities=14% Similarity=0.105 Sum_probs=93.2
Q ss_pred CCCeEEEEEeeCCCCEEEEEeCCCcEEEEe---CCCCeEEEeccCCCCeEEEEEee--CCCEEEEEecCCcEEEEEcCCC
Q 006909 308 HNYVTCVQFNPIDDNYFISGSIDGKVRIWG---VCEKRVVDWADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGN 382 (626)
Q Consensus 308 ~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd---~~~~~~~~~~~~~~~i~~i~~sp--~g~~l~~g~~dg~i~i~d~~~~ 382 (626)
.+.+..+.... +.++|+.-+..|.++--. +....-..+......|.++.. + +..+++..+.+|.++-..+...
T Consensus 23 gD~~~~~~~~~-t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 23 KAPVVNILRVP-FTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCCEEEEEEEE-TTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CCeEEEEEEEC-CCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 34455554444 444555555667655432 221111011333455666544 4 4678999999999999987654
Q ss_pred ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc---------ceeeeeecCCCCCeEEEEEcCC
Q 006909 383 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---------VIHKFKGLPKSGSQMSASFTTT 453 (626)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~sp~ 453 (626)
. .... .........++.+..+...... ..++..+..|.+..+...+ ....+.. .....|..+...++
T Consensus 101 ~-~~~~-G~~~i~lkegD~l~~~~~~~~~-~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L-~~~d~vv~~~~~~~ 176 (276)
T 3no0_A 101 E-YKAQ-GMPIIKLTEGDEVVSIASSVDE-THILLFTKKGRVARFSVREVPPSTPGARGVQGIKL-EKNDETSGLRIWNG 176 (276)
T ss_dssp T-TCST-TEECSCCCTTCCEEEEEECCSS-CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEEEESS
T ss_pred h-hhcC-CeEEEecCCCCEEEEEEEeCCC-CEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc-CCCCEEEEEEEeCC
Confidence 3 1110 0000011123566666665543 5788889999988887432 2222222 23456766666666
Q ss_pred CCEEEEEeCCccEEEEECCCC
Q 006909 454 GKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 454 g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+.+++..+..|.++...+..-
T Consensus 177 ~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp CSEEEEEETTSCEEEEEGGGS
T ss_pred CCEEEEEeCCCcEEEeEHHHc
Confidence 778999999999999988764
No 365
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=68.43 E-value=1.4e+02 Score=32.40 Aligned_cols=174 Identities=13% Similarity=0.094 Sum_probs=89.9
Q ss_pred CcEEEeccCCCe--eeEeec--CCCCeEEEEEeeCCCC-----EEEEEeCC---CcEEEEeCCC--CeEEEeccCCCCeE
Q 006909 289 KTVRMWQVGCNQ--CLNVFD--HHNYVTCVQFNPIDDN-----YFISGSID---GKVRIWGVCE--KRVVDWADVRDVIS 354 (626)
Q Consensus 289 ~~v~iwd~~~~~--~~~~~~--~~~~v~~~~~~p~~~~-----~l~s~s~d---g~v~iwd~~~--~~~~~~~~~~~~i~ 354 (626)
..|+.|.+.+.. -...+. ....-.....++ ++. .+++.+.+ ..+.+.|... ++...+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA-- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc--
Confidence 568888887653 223333 222223344455 555 34544422 3466666553 444444322222
Q ss_pred EEEEeeCCCEEEEE----------ecCCcEEEEEcCCCc------eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909 355 AICYIPDGKGFIVG----------SITGTCHFYKASGND------LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 418 (626)
Q Consensus 355 ~i~~sp~g~~l~~g----------~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~ 418 (626)
.+..++++..++.. ...+.|...++.+.. .....+..+. ....+..+.+..+ .++++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~--~l~~~~ 366 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPT----ANEVFNFISTTKD--RVFLAT 366 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCC----TTEEEEEEEECSS--CEEEEE
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCC----CCCeEEEEEEECC--EEEEEE
Confidence 12344566555532 246778888887642 1111111111 1256788899887 477777
Q ss_pred eCCCc--EEEEeCCcc---eee-eeecCCCCCeEEEEEcCCCC-EEEEEeC---CccEEEEECC
Q 006909 419 SEDSK--LRILDGVDV---IHK-FKGLPKSGSQMSASFTTTGK-HIISIGD---DCRVYVWNYD 472 (626)
Q Consensus 419 s~dg~--i~iwd~~~~---~~~-~~~~~~~~~v~~~~~sp~g~-~l~s~s~---dg~I~iwd~~ 472 (626)
..++. |.+++.... ... +.. +..+.+.....++++. ++++.+. -+.++.+|+.
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~l-p~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKL-PYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECC-CSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EECCEEEEEEEECCCCceEEEeccCC-CCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 77764 566664332 122 222 2234566666677765 4444443 3678888876
No 366
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=64.08 E-value=1e+02 Score=29.32 Aligned_cols=196 Identities=13% Similarity=0.132 Sum_probs=108.6
Q ss_pred cCCCeEEEEeCCCcEEEe---ccCC------CeeeE---eecCCCCeEEEEEee--CCCCEEEEEeCCCcEEEEeCCC--
Q 006909 277 SNSNYLLSCSMDKTVRMW---QVGC------NQCLN---VFDHHNYVTCVQFNP--IDDNYFISGSIDGKVRIWGVCE-- 340 (626)
Q Consensus 277 s~~~~l~s~s~d~~v~iw---d~~~------~~~~~---~~~~~~~v~~~~~~p--~~~~~l~s~s~dg~v~iwd~~~-- 340 (626)
+....|+..+..|.+.-. ++.. |..+. .+.....|.++...+ .++.+++.++.+|.++-..+..
T Consensus 51 ~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~ 130 (307)
T 1zi0_A 51 NTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 130 (307)
T ss_dssp ETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGT
T ss_pred CCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhh
Confidence 344567777777775544 4422 22221 123445666664421 1456788999999999886632
Q ss_pred -----CeE-EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCc
Q 006909 341 -----KRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQ 413 (626)
Q Consensus 341 -----~~~-~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (626)
+.. +.+.. .+.+..+........++..+..|.+..+....-...-. ...........+..|.++...+++ .
T Consensus 131 ~~~r~G~~~i~l~~-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~-~ 208 (307)
T 1zi0_A 131 RLRTAGKVAIKLVD-GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD-G 208 (307)
T ss_dssp TCCTTCEESSCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSS-C
T ss_pred ccccCCeEEEEECC-CCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCC-C
Confidence 111 11222 25555555555566788889999988888753211100 000000011123567777655444 4
Q ss_pred EEEEEeCCCcEEEEeCCcc---------eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 414 RIMITSEDSKLRILDGVDV---------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 414 ~l~~~s~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.+++.+..|.++-.++... ...+......+.+..+....+...|+..+.+|.+.-+++..-
T Consensus 209 ~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 209 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp EEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred EEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 7888899999988875321 222222223355555544444555667777888877777653
No 367
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=62.98 E-value=1.2e+02 Score=29.77 Aligned_cols=190 Identities=11% Similarity=0.150 Sum_probs=110.3
Q ss_pred CeEEEEeCCCcEEEeccCC---------CeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe---CCC------C
Q 006909 280 NYLLSCSMDKTVRMWQVGC---------NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG---VCE------K 341 (626)
Q Consensus 280 ~~l~s~s~d~~v~iwd~~~---------~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd---~~~------~ 341 (626)
..+++.+.+|.|+--.+.. +.....+...+.+..+.... ....++..+..|.++-+. +.. |
T Consensus 8 ~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G 86 (370)
T 3l6v_A 8 DVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGSNARG 86 (370)
T ss_dssp CEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred CEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCcccCC
Confidence 3788889999998754321 22223344566777776666 667777777888776554 322 1
Q ss_pred eEE-Ee--ccCCCCeEEEEEee---CCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCcE
Q 006909 342 RVV-DW--ADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQR 414 (626)
Q Consensus 342 ~~~-~~--~~~~~~i~~i~~sp---~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~ 414 (626)
... .. ......|.++..-. ++.+|+.++..|.++...+........ -..... . .....+..+...... ..
T Consensus 87 ~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~-L-~~~d~lv~v~~~~~~-~~ 163 (370)
T 3l6v_A 87 RPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAIN-L-DEGDALVGVALTDGD-RD 163 (370)
T ss_dssp EEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSC-C-CTTCCEEEEEEECSC-CE
T ss_pred cCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEE-e-CCCCEEEEEEEeCCC-ce
Confidence 111 11 12344555554332 456899999999999988754332110 000010 1 113455555555443 57
Q ss_pred EEEEeCCCcEEEEeCCc---------ceeeeeecCCCCCeEEEEEcC---------------------------------
Q 006909 415 IMITSEDSKLRILDGVD---------VIHKFKGLPKSGSQMSASFTT--------------------------------- 452 (626)
Q Consensus 415 l~~~s~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~sp--------------------------------- 452 (626)
++..+..|.+..++..+ ....+.. .....|.++...+
T Consensus 164 i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~ 242 (370)
T 3l6v_A 164 VLLFASNGKTVRFGESTVRSMGRTATGVRGIRL-AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVAD 242 (370)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEEEECCC-------------------------------
T ss_pred EEEEeCCCeEEEEEccccCccCCCCCCeeeEEe-CCCCEEEEEEEecccccccccccccccccccccccccccccccccc
Confidence 88888888888887432 2222222 2344565555444
Q ss_pred --CCCEEEEEeCCccEEEEECCCC
Q 006909 453 --TGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 453 --~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
++..|++.+..|..+...+..-
T Consensus 243 ~~~~~~il~vTe~G~gKrt~~~e~ 266 (370)
T 3l6v_A 243 NGDVAYILTATENGYGKRTPLAEY 266 (370)
T ss_dssp ----CEEEEEETTSEEEEEEGGGS
T ss_pred ccCCceEEEeeCCCCEEEEEHHHh
Confidence 4568999999999999988764
No 368
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=61.73 E-value=1.1e+02 Score=29.07 Aligned_cols=188 Identities=9% Similarity=0.099 Sum_probs=112.7
Q ss_pred eEEEEeCCCcEEEeccCCCee-------eE--eecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC---CC------e
Q 006909 281 YLLSCSMDKTVRMWQVGCNQC-------LN--VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC---EK------R 342 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~-------~~--~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~---~~------~ 342 (626)
.+++.+.+|.|+--.+..... +. .+...+.+..+.... ..+.++..+..|.++-+... .. .
T Consensus 10 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~ 88 (312)
T 1suu_A 10 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRASKGQ 88 (312)
T ss_dssp EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC-------C
T ss_pred EEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCccCCCc
Confidence 688888999998776543221 11 123445566666665 66778888888987766543 21 1
Q ss_pred ----EEEeccCCCCeEEEEEee---CCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCcE
Q 006909 343 ----VVDWADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQR 414 (626)
Q Consensus 343 ----~~~~~~~~~~i~~i~~sp---~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~ 414 (626)
.+. ......|.++...+ +..+++..+..|.++...+........ -.... .......+..+.....+ ..
T Consensus 89 ~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i--~L~~~d~lv~~~~~~~~-~~ 164 (312)
T 1suu_A 89 NISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVI--KLNDKDFVTSAEIVFKD-EK 164 (312)
T ss_dssp BGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECB--CCCTTCCEEEEEEECTT-CE
T ss_pred ChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEE--ecCCCCEEEEEEEeCCC-CE
Confidence 111 12234455554333 467899999999999888754322110 00000 11123566666665443 57
Q ss_pred EEEEeCCCcEEEEeCCc---------ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 415 IMITSEDSKLRILDGVD---------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 415 l~~~s~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
++..+.+|.+..+...+ ....+... ....|..+..-.++..|++.+..|..+..++..-
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 88999999998887543 22222222 3456666666556778889999999999998764
No 369
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=56.78 E-value=1.4e+02 Score=28.63 Aligned_cols=195 Identities=10% Similarity=0.112 Sum_probs=111.3
Q ss_pred CCeEEEEeCCCcEE---EeccCC------CeeeEe---ecCCCCeEEEEEeeC--CCCEEEEEeCCCcEEEEeCCC----
Q 006909 279 SNYLLSCSMDKTVR---MWQVGC------NQCLNV---FDHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGVCE---- 340 (626)
Q Consensus 279 ~~~l~s~s~d~~v~---iwd~~~------~~~~~~---~~~~~~v~~~~~~p~--~~~~l~s~s~dg~v~iwd~~~---- 340 (626)
...|+.-+..|.+. +|++.. |..+.. +.....|.++...+. +..+++.++.+|.++-..+..
T Consensus 53 ~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~ 132 (327)
T 3uc1_A 53 HDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSN 132 (327)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCC
T ss_pred CCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcc
Confidence 34555555566544 345532 222211 234456666644431 467999999999999887643
Q ss_pred ---CeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeE---EeeccccccCCCCeEEEEEcCCCCcE
Q 006909 341 ---KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK---VDFHDRKKTSGNKITGIQFSRDESQR 414 (626)
Q Consensus 341 ---~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~i~~l~~s~~~~~~ 414 (626)
+.........+.+..+........++..+..|.+..+.....+.+... .....-.......|.++...+.+ ..
T Consensus 133 ~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~-~~ 211 (327)
T 3uc1_A 133 RSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREG-TY 211 (327)
T ss_dssp CSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTT-CE
T ss_pred ccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCC-CE
Confidence 111111222455666655566678889999999988887621111100 00000111224667777766554 58
Q ss_pred EEEEeCCCcEEEEeCCc---------ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 415 IMITSEDSKLRILDGVD---------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 415 l~~~s~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
++..+..|.++.-.+.. ....+........+..+....+...++..+.+|.+.-++...-
T Consensus 212 ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 212 LLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGS
T ss_pred EEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhc
Confidence 89999999998877432 2222222222345655555455567777788898888887753
No 370
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=50.47 E-value=3.2 Score=24.33 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=18.5
Q ss_pred ccceeccCCCChHHHHhhhccc
Q 006909 37 DYDIWMSEPRSVKERRSSMNRA 58 (626)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~ 58 (626)
=||| ..-|.-.+|+|..|++.
T Consensus 9 FYev-Lh~~nLtEeQrn~yI~s 29 (34)
T 1l6x_B 9 FYEA-LHDPNLNEEQRNAKIKS 29 (34)
T ss_dssp HHHH-HHCTTCCHHHHHHHHHH
T ss_pred HHHH-HcCCCCCHHHHHhHHHH
Confidence 3888 89999999999999874
No 371
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=48.39 E-value=3.3 Score=24.96 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=20.0
Q ss_pred CcccceeccCCCChHHHHhhhccc
Q 006909 35 KLDYDIWMSEPRSVKERRSSMNRA 58 (626)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~ 58 (626)
.+=||| ..-|.-.+|+|..|++.
T Consensus 12 naFYev-Lh~~nLtEeQrn~yI~s 34 (38)
T 1zda_A 12 RRFYEA-LHDPNLNEEQRNAKIKS 34 (38)
T ss_dssp HHHHHH-HSCSSSCTTHHHHHHHH
T ss_pred HHHHHH-HcCCCCCHHHHHhHHHH
Confidence 455999 99999999999999974
No 372
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=47.90 E-value=1.9e+02 Score=27.41 Aligned_cols=188 Identities=12% Similarity=0.106 Sum_probs=105.4
Q ss_pred eEEEEeCCCcEEEeccCCCeeeE---------eecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC---CC------Ce
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCLN---------VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV---CE------KR 342 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~~---------~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~---~~------~~ 342 (626)
.+++.+.+|.|+--.+...+... .+...+.+..+.... ..+.++..+..|.++-+.. .. |.
T Consensus 5 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~ 83 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRGARGR 83 (307)
T ss_dssp EEEEEETTSEEEEEECC--------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSSSCCE
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCCCCCe
Confidence 67788888888876654322211 122345555555555 6667777778888665543 22 22
Q ss_pred EEE---eccCCCCeEEEEEe---eCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 343 VVD---WADVRDVISAICYI---PDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 343 ~~~---~~~~~~~i~~i~~s---p~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
.+. .......|.++..- .++.+++..+..|.++-..+........ -..... .. ..+.+..+...... ..+
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~-l~-~~d~lv~~~~~~~~-~~i 160 (307)
T 1zi0_A 84 PIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIK-LV-DGDELIGVDLTSGE-DEV 160 (307)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSC-CC-TTCCEEEEEEECTT-CEE
T ss_pred EhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEE-EC-CCCEEEEEEEeCCC-CEE
Confidence 111 12234456555432 3566899999999999988753222111 000000 11 12556565555443 478
Q ss_pred EEEeCCCcEEEEeCCc---------ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 416 MITSEDSKLRILDGVD---------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 416 ~~~s~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
+..+.+|.+..++..+ ....+.. .....|.++...+++..|++.+..|.++-.++..
T Consensus 161 ~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 161 MLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL-GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEECCCCcEEEEEHHHcCccCCCCCCeEeEEe-CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 8888889888887432 1222222 2345677766555667888999999999888765
No 373
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=45.00 E-value=2.1e+02 Score=27.14 Aligned_cols=196 Identities=14% Similarity=0.184 Sum_probs=104.6
Q ss_pred cCCCeEEEEeCCCcEEEeccC---CC------eee---EeecCCCCeEEEEEeeC--CCCEEEEEeCCCcEEEEeCCC--
Q 006909 277 SNSNYLLSCSMDKTVRMWQVG---CN------QCL---NVFDHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGVCE-- 340 (626)
Q Consensus 277 s~~~~l~s~s~d~~v~iwd~~---~~------~~~---~~~~~~~~v~~~~~~p~--~~~~l~s~s~dg~v~iwd~~~-- 340 (626)
+....++..+..|.++-.... .. ..+ -.+.....|.++...+. +..+++..+..|.++...+..
T Consensus 56 ~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~ 135 (312)
T 1suu_A 56 NTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFK 135 (312)
T ss_dssp ETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGC
T ss_pred CCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhh
Confidence 344567777778876655432 21 110 11234455665544321 356788889999999887632
Q ss_pred -----CeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCcE
Q 006909 341 -----KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQR 414 (626)
Q Consensus 341 -----~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~ 414 (626)
+.........+.+..+.....+..++..+.+|.+..+....-..... ...........+..|..+...+++ ..
T Consensus 136 ~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~-~~ 214 (312)
T 1suu_A 136 AVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN-PY 214 (312)
T ss_dssp C----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTC-SE
T ss_pred ccCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCC-Ce
Confidence 11111122245566666555567888999999999998764211100 000000011123566776665444 46
Q ss_pred EEEEeCCCcEEEEeCCcc---------eeeeeec-CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 415 IMITSEDSKLRILDGVDV---------IHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 415 l~~~s~dg~i~iwd~~~~---------~~~~~~~-~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
+++.+..|..+..++.+. ...+... .....+..+....+...++..+..|.+.-.....
T Consensus 215 l~~vt~~G~~kr~~~~e~~~~~R~~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 215 LLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred EEEEECCCceEEEEHHHhcccCCCCCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
Confidence 888899999988885432 2222221 1223444432223444555555667555455544
No 374
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=44.26 E-value=3.4e+02 Score=29.36 Aligned_cols=103 Identities=12% Similarity=0.117 Sum_probs=55.7
Q ss_pred cceEEEEEcCC--CeEEEEeCCCcEEEeccCCCeeeEeecC-------CCCeEEEEEeeCCCCEEEEEeCCC-------c
Q 006909 269 GDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFISGSIDG-------K 332 (626)
Q Consensus 269 ~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~l~s~s~dg-------~ 332 (626)
+.|..|+++|. +.++.+...+.|..++-....-.....+ ...|.+|+++|.+.+.++.+.... .
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 38999999986 4677777666666554332222222221 235899999986656655554211 2
Q ss_pred EEEEe-CCCCeE---EEeccC-------CCCeEEEEEeeC-CCEEEEEecC
Q 006909 333 VRIWG-VCEKRV---VDWADV-------RDVISAICYIPD-GKGFIVGSIT 371 (626)
Q Consensus 333 v~iwd-~~~~~~---~~~~~~-------~~~i~~i~~sp~-g~~l~~g~~d 371 (626)
..||- ...++. +..... ...+..|+++|. ...++++...
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 34443 233332 111100 112467899885 4567776633
No 375
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=41.87 E-value=59 Score=37.62 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=28.8
Q ss_pred eEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEec
Q 006909 311 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA 347 (626)
Q Consensus 311 v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 347 (626)
+.+++..+ +..++++-+.|+++|+|++.+++++...
T Consensus 240 ~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 240 IISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp BSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 34455555 7789999999999999999999887643
No 376
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=40.87 E-value=60 Score=37.57 Aligned_cols=37 Identities=19% Similarity=0.523 Sum_probs=29.6
Q ss_pred ceEEEEEcCC-CeEEEEeCCCcEEEeccCCCeeeEeec
Q 006909 270 DVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD 306 (626)
Q Consensus 270 ~V~~l~~s~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~ 306 (626)
.+.+++..++ .++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3444555555 489999999999999999999998864
No 377
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=38.79 E-value=4e+02 Score=28.68 Aligned_cols=193 Identities=15% Similarity=0.127 Sum_probs=95.2
Q ss_pred eEEEE-EcCCC--eEEEEeCC----CcEEEeccCCCeeeEe-ecCCC--------CeEEEEEeeCCCCEEEEEe------
Q 006909 271 VLDLA-WSNSN--YLLSCSMD----KTVRMWQVGCNQCLNV-FDHHN--------YVTCVQFNPIDDNYFISGS------ 328 (626)
Q Consensus 271 V~~l~-~s~~~--~l~s~s~d----~~v~iwd~~~~~~~~~-~~~~~--------~v~~~~~~p~~~~~l~s~s------ 328 (626)
...+. ++|++ .+++-|.. ..++++|+.+++.+.. |.... ....++|.. +...+++..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC-CCEEEEEeCCCCCCc
Confidence 34444 67876 34444433 4699999999987642 22000 113447865 444444321
Q ss_pred ----CCCcEEEEeCCCCe----EEEeccCCCCeEEEEEeeCCCE-----EEEEecC---CcEEEEEcCCCceeeeEEeec
Q 006909 329 ----IDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKG-----FIVGSIT---GTCHFYKASGNDLKLEKVDFH 392 (626)
Q Consensus 329 ----~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~g~~-----l~~g~~d---g~i~i~d~~~~~~~~~~~~~~ 392 (626)
.-.+|+.|.+-+.. ++........-.....++++++ +++.+.+ ..+.+.+..........+...
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMP 289 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSC
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecC
Confidence 12468888775532 2222222222334555667663 3333322 345555554322222222211
Q ss_pred cccccCCCCeEEEEEcCCCCcEEEEE----------eCCCcEEEEeCCcce---------eeeeecCCCCCeEEEEEcCC
Q 006909 393 DRKKTSGNKITGIQFSRDESQRIMIT----------SEDSKLRILDGVDVI---------HKFKGLPKSGSQMSASFTTT 453 (626)
Q Consensus 393 ~~~~~~~~~i~~l~~s~~~~~~l~~~----------s~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~sp~ 453 (626)
. . ..+..+.++ .+++.. ...+.|.+.|+.+.. ..+........+..+.+..+
T Consensus 290 ~-------~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (711)
T 4hvt_A 290 S-------D-ATLQGSFKE-YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD 360 (711)
T ss_dssp T-------T-CEEEEEETT-EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred C-------c-ceEeeeECC-EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence 1 1 112334454 444422 246778888866531 12222333446778888765
Q ss_pred CCEEEEEeCCc--cEEEEECCCC
Q 006909 454 GKHIISIGDDC--RVYVWNYDEL 474 (626)
Q Consensus 454 g~~l~s~s~dg--~I~iwd~~~~ 474 (626)
.++++...++ .|+++++.++
T Consensus 361 -~l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 361 -RVFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp -CEEEEEEETTEEEEEEECEETT
T ss_pred -EEEEEEEECCEEEEEEEECCCC
Confidence 5677777675 4677776554
No 378
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=38.19 E-value=4.3e+02 Score=28.83 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=77.0
Q ss_pred ccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCeeeEee-cC-------CCCeEEEEEeeCCCCEEEEEeCCCc----E
Q 006909 268 KGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DH-------HNYVTCVQFNPIDDNYFISGSIDGK----V 333 (626)
Q Consensus 268 ~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~~~~~-~~-------~~~v~~~~~~p~~~~~l~s~s~dg~----v 333 (626)
...|.+|+++|. +.++++...+.|...+= .++.-..+ .+ ...+.+|++.|.+.+.++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999985 46777777776655542 23322222 21 2369999999845555655543211 2
Q ss_pred EEE-eCCCCeEEEeccC----------CCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 334 RIW-GVCEKRVVDWADV----------RDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 334 ~iw-d~~~~~~~~~~~~----------~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
.|| ....++.-..... ...+..++++|. ...++++...+. +|-....-.....+............
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCCCC
Confidence 333 2333432221111 113567888874 446666664443 33333322222222110000011245
Q ss_pred eEEEEEcCCCCcEEEEEeCC
Q 006909 402 ITGIQFSRDESQRIMITSED 421 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~d 421 (626)
+..+.+.|.....++++..+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEEECTTSTTCEEEEESS
T ss_pred eEEEEECCCCCCEEEEEEcC
Confidence 78899988654566666654
No 379
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=33.65 E-value=2.9e+02 Score=25.54 Aligned_cols=202 Identities=8% Similarity=0.053 Sum_probs=112.7
Q ss_pred ceEEEEEc-CCCeEEEEeCCCcEEE---eccCCCeeeEeecCCCCeEEEEEeeC-CCCEEEEEeCCCcEEEEeCCCCe--
Q 006909 270 DVLDLAWS-NSNYLLSCSMDKTVRM---WQVGCNQCLNVFDHHNYVTCVQFNPI-DDNYFISGSIDGKVRIWGVCEKR-- 342 (626)
Q Consensus 270 ~V~~l~~s-~~~~l~s~s~d~~v~i---wd~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s~s~dg~v~iwd~~~~~-- 342 (626)
.+..+... ....|+.-+.+|.++- |++..+.....+.....|..+.. +. +..+++.++.+|.++-..+..-.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~ 103 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYK 103 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTC
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhh
Confidence 34444333 3335666666776554 44432211111445566777644 31 35789999999999988764321
Q ss_pred ----EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909 343 ----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMI 417 (626)
Q Consensus 343 ----~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~ 417 (626)
........+.+..+........++..+..|.+..+....-..... ........-.....|..+...+++ ..++.
T Consensus 104 ~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~-~~ll~ 182 (276)
T 3no0_A 104 AQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGE-PYLLV 182 (276)
T ss_dssp STTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSC-SEEEE
T ss_pred cCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCC-CEEEE
Confidence 111122345566666656667899999999988887643211100 000000011123567766655554 58888
Q ss_pred EeCCCcEEEEeCCcce-------eeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEE--EECCCC
Q 006909 418 TSEDSKLRILDGVDVI-------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV--WNYDEL 474 (626)
Q Consensus 418 ~s~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~i--wd~~~~ 474 (626)
.+..|.++...+.+.. ..... ...+.+..+........++..+.+|.+.. ++...-
T Consensus 183 ~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 183 ITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred EeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 9999999988754211 11111 23445555544444456777788888888 887653
No 380
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=33.08 E-value=56 Score=35.18 Aligned_cols=38 Identities=11% Similarity=0.321 Sum_probs=30.5
Q ss_pred cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecC
Q 006909 269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH 307 (626)
Q Consensus 269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~ 307 (626)
..|.++.+ ++.++++-+.|+++|+|++.+++++.+..-
T Consensus 222 ~~Is~~~~-~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF-HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE-TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc-CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34555544 467999999999999999999999887754
No 381
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=31.32 E-value=5.4e+02 Score=27.89 Aligned_cols=152 Identities=10% Similarity=0.079 Sum_probs=74.1
Q ss_pred CccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-------------CCCCeEEEEEeeCCCCEEEEEeCC-
Q 006909 267 HKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-------------HHNYVTCVQFNPIDDNYFISGSID- 330 (626)
Q Consensus 267 h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-------------~~~~v~~~~~~p~~~~~l~s~s~d- 330 (626)
-.+.|..|+++|.+ .++.+...+.|...+= .++.-..+. ....+.+++++|.+.+.++.+...
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~D-gG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNA-AKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEECC-CCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45689999999864 6666666665544432 232222221 123589999988555655554321
Q ss_pred ----CcEEEE-eCCCCeE---EEecc-C----CC--CeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEe-ecc
Q 006909 331 ----GKVRIW-GVCEKRV---VDWAD-V----RD--VISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVD-FHD 393 (626)
Q Consensus 331 ----g~v~iw-d~~~~~~---~~~~~-~----~~--~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~~~ 393 (626)
....|| ....++. +.... . .. ....++++|. ...++++...+.| |-....-....... +..
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l--~~S~DgG~TW~~~~~~~~ 175 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGL--WRSTDRAQTWSRMNQLPD 175 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCE--EEESSTTSSCEECTTSCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcE--EEECCCCcCccccccCcc
Confidence 112333 2333332 21110 0 11 1146888875 3455556554433 33222221122111 000
Q ss_pred ccccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 006909 394 RKKTSGNKITGIQFSRDESQRIMITSEDS 422 (626)
Q Consensus 394 ~~~~~~~~i~~l~~s~~~~~~l~~~s~dg 422 (626)
.......+..+.+.|.++..++++..++
T Consensus 176 -~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 176 -SSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp -CSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred -cCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 0011245788999887555666666665
No 382
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=30.15 E-value=4e+02 Score=26.07 Aligned_cols=141 Identities=11% Similarity=0.107 Sum_probs=74.5
Q ss_pred cEEEEeCCCC--eEEEecc-------CCCCeEEEEEe---eC----CCEEEEEe-cCCcEEEEEcCCCceeeeEE-----
Q 006909 332 KVRIWGVCEK--RVVDWAD-------VRDVISAICYI---PD----GKGFIVGS-ITGTCHFYKASGNDLKLEKV----- 389 (626)
Q Consensus 332 ~v~iwd~~~~--~~~~~~~-------~~~~i~~i~~s---p~----g~~l~~g~-~dg~i~i~d~~~~~~~~~~~----- 389 (626)
+|.+||+.+. ++++... ....+..+.+. |. +.+++++. ..+.|.+||+.+++.-...-
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4566676666 5554222 12446777777 22 23444444 46789999998765432110
Q ss_pred ------eeccccccCCCCeEEEEEcCC----CCcEEEEEeCCC-cEEEEeC---C--cceeeee--ecCC-CCCeEEEEE
Q 006909 390 ------DFHDRKKTSGNKITGIQFSRD----ESQRIMITSEDS-KLRILDG---V--DVIHKFK--GLPK-SGSQMSASF 450 (626)
Q Consensus 390 ------~~~~~~~~~~~~i~~l~~s~~----~~~~l~~~s~dg-~i~iwd~---~--~~~~~~~--~~~~-~~~v~~~~~ 450 (626)
...+..-.-...+..|+++|+ + +.|.-....+ .+.-..+ + .....++ +... ...-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~-~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGN-RPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSC-CEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCC-eEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 000000001247889999997 4 4454444333 3443331 1 1111111 2111 133345667
Q ss_pred c-CCCCEEEEEeCCccEEEEECCC
Q 006909 451 T-TTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 451 s-p~g~~l~s~s~dg~I~iwd~~~ 473 (626)
. .+|.+.++--..+.|..|+..+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTS
T ss_pred eCCCCeEEEEeccCCeEEEEeCCC
Confidence 5 6787777777888999999876
No 383
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=28.43 E-value=76 Score=34.18 Aligned_cols=36 Identities=19% Similarity=0.533 Sum_probs=28.5
Q ss_pred eEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccC
Q 006909 311 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV 349 (626)
Q Consensus 311 v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 349 (626)
|.++.+ +..++++.+.|+++|+|++.+++++.....
T Consensus 224 Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 555444 578999999999999999999987764433
No 384
>3qwo_C Motavizumab epitope scaffold; immune complex, immune system; HET: EDO; 1.90A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=28.06 E-value=12 Score=24.82 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.3
Q ss_pred cccceeccCCCChHHHHhhhccc
Q 006909 36 LDYDIWMSEPRSVKERRSSMNRA 58 (626)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ 58 (626)
+-||| ++-|.-.+|+|..||+.
T Consensus 9 AFYei-l~lpnLtEeqRn~yI~s 30 (57)
T 3qwo_C 9 ASNEI-ANLPNLNEEQRSAFLSS 30 (57)
T ss_dssp HHHHH-HHCTTCCHHHHHHHHHH
T ss_pred HHHHH-HcCCCcchhhccchHhh
Confidence 34888 89999999999999985
No 385
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=27.75 E-value=6e+02 Score=27.33 Aligned_cols=113 Identities=9% Similarity=0.116 Sum_probs=62.8
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccC-------CCCeEEEEEee-CCCEEEEEecC-------Cc
Q 006909 309 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-------RDVISAICYIP-DGKGFIVGSIT-------GT 373 (626)
Q Consensus 309 ~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-------~~~i~~i~~sp-~g~~l~~g~~d-------g~ 373 (626)
..|..|+++|.+.+.++.+...+.|...+-....-..+... ...|.+|+++| +.+.++++... +.
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 37999999996667777777667776665433332222221 24589999998 44555555432 12
Q ss_pred EEEEEcCCCceeeeEEeecccccc--C-CCCeEEEEEcCCCCcEEEEEeCC
Q 006909 374 CHFYKASGNDLKLEKVDFHDRKKT--S-GNKITGIQFSRDESQRIMITSED 421 (626)
Q Consensus 374 i~i~d~~~~~~~~~~~~~~~~~~~--~-~~~i~~l~~s~~~~~~l~~~s~d 421 (626)
..||.....-.............. . ...+..|++.|..+..++++...
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 455655443333332222110000 0 01246789998766677777643
No 386
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=26.47 E-value=2e+02 Score=30.05 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=43.0
Q ss_pred CeEEEEEeeCCCCEEEEEeC------------CCcEEEEeCCCCeEEEecc--CCCCeEEEEEeeCCCEEEEEec
Q 006909 310 YVTCVQFNPIDDNYFISGSI------------DGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGSI 370 (626)
Q Consensus 310 ~v~~~~~~p~~~~~l~s~s~------------dg~v~iwd~~~~~~~~~~~--~~~~i~~i~~sp~g~~l~~g~~ 370 (626)
....|.|.+ ++.+.+.... ...|..++..++++..+.. ....++.++|+||++.|++.-.
T Consensus 477 sPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 466889998 8887774322 1257777877787766553 2356899999999998888653
No 387
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=26.39 E-value=6.4e+02 Score=27.24 Aligned_cols=157 Identities=10% Similarity=0.087 Sum_probs=77.2
Q ss_pred CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-ecc------------CCCCeEEEEEee-CCCEEEEEecC-
Q 006909 307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD------------VRDVISAICYIP-DGKGFIVGSIT- 371 (626)
Q Consensus 307 ~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~------------~~~~i~~i~~sp-~g~~l~~g~~d- 371 (626)
....|.+|+++|.+.+.++.+...|.|...+= .++.-. ... ....+.+++++| +.+.++++...
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~D-gG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNA-AKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEECC-CCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45689999999977788888876676654432 232221 111 224589999988 34455554421
Q ss_pred ----CcEEEEEcCCCceeeeEEeecccccc--CCC-CeEEEEEcCCCCcEEEEEeCCCcEEEE-eCCcceeeeeecC---
Q 006909 372 ----GTCHFYKASGNDLKLEKVDFHDRKKT--SGN-KITGIQFSRDESQRIMITSEDSKLRIL-DGVDVIHKFKGLP--- 440 (626)
Q Consensus 372 ----g~i~i~d~~~~~~~~~~~~~~~~~~~--~~~-~i~~l~~s~~~~~~l~~~s~dg~i~iw-d~~~~~~~~~~~~--- 440 (626)
....||.....-.....+........ ... ....++++|..+..++++...+.|..= |....-.......
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~S~DgG~TW~~~~~~~~~~ 177 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWRSTDRAQTWSRMNQLPDSS 177 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEEESSTTSSCEECTTSCCCS
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEEECCCCcCccccccCcccC
Confidence 12344444333222222221110000 001 124688888655566666655443322 2111111111111
Q ss_pred -CCCCeEEEEEcCCC-CEEEEEeCCc
Q 006909 441 -KSGSQMSASFTTTG-KHIISIGDDC 464 (626)
Q Consensus 441 -~~~~v~~~~~sp~g-~~l~s~s~dg 464 (626)
....+..+.++|.. ..++.+..++
T Consensus 178 ~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 178 TYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCccceEEEEECCCCCCEEEEEEeCC
Confidence 12347788888753 4455555554
No 388
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=24.58 E-value=2.8e+02 Score=29.13 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=38.0
Q ss_pred CCeEEEEEcCCCCcEEEEEeCC------------CcEEEEeCC-cceeeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909 400 NKITGIQFSRDESQRIMITSED------------SKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISI 460 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s~d------------g~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~ 460 (626)
...-.|.|+|.| .+++.-..+ +.+.+.+.. ..+..|..-+....++.++|+||++.|+..
T Consensus 476 ~~PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 476 NSPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cCCcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 345789999998 444443322 234445543 223334334467889999999999988775
No 389
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=24.18 E-value=2.5e+02 Score=29.29 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=40.6
Q ss_pred cceEEEEEcCCCeEEEEeCC-------------CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEe
Q 006909 269 GDVLDLAWSNSNYLLSCSMD-------------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 269 ~~V~~l~~s~~~~l~s~s~d-------------~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s 328 (626)
.....|.|.++|.|..+... ..|..++..+++....+. ....++.++|+| +++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEEE
Confidence 45778999998855553321 256666777777665553 235789999999 888877653
Done!