BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006910
         (626 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EWS|A Chain A, Crystal Structure Of S.Aureus Pantothenate Kinase
 pdb|2EWS|B Chain B, Crystal Structure Of S.Aureus Pantothenate Kinase
          Length = 287

 Score = 34.3 bits (77), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 19/107 (17%)

Query: 197 GTHIIVGLSIGGQDVVLVNQDNSSNLGPSELKKHLDD----LGDQLFTGTCNFTPN---I 249
           G+H+ VG+  GG  + +V + ++     +EL K++D     L  Q     C    N   I
Sbjct: 18  GSHMKVGIDAGGTLIKIVQEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVI 77

Query: 250 KEQKNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGDPSAY 296
            E  N P Q F  FD            ++  G+ ++   +G D + Y
Sbjct: 78  AENINIPAQIFVEFD------------AASQGLGILLKEQGHDLADY 112


>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
 pdb|4A5W|B Chain B, Crystal Structure Of C5b6
 pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
          Length = 913

 Score = 32.3 bits (72), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 8/157 (5%)

Query: 178 NAVPSSWDPFALARFIEKYGTHIIVGLSIGGQDVVLVNQDNSSNLGPS----ELKKHLDD 233
           N +P  ++    +R  + +GTH     S+GG    L+ Q +S  L  S    E  KH   
Sbjct: 322 NHLPLEYNSALYSRIFDDFGTHYFTSGSLGGV-YDLLYQFSSEELKNSGLTEEEAKHCVR 380

Query: 234 LGDQ---LFTGTCNFTPNIKEQKNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRG 290
           +  +   LF             K               +++      S+ G ++   +  
Sbjct: 381 IETKKRVLFAKKTKVEHRCTTNKLSEKHEGSFIQGAEKSISLIRGGRSEYGAALAWEKGS 440

Query: 291 GDPSAYSHCEWLLTVPSNPDAVHFNFIPITSLLKGVP 327
                 +  EWL +V  NP  + F   PI  L++ +P
Sbjct: 441 SGLEEKTFSEWLESVKENPAVIDFELAPIVDLVRNIP 477


>pdb|2RD7|A Chain A, Human Complement Membrane Attack Proteins Share A Common
           Fold With Bacterial Cytolysins
          Length = 367

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 180 VPSSWDPFALARFIEKYGTHIIVGLSIGG--QDVVLVNQDNSSNLG 223
           +P  ++    A+FI  YGTH I   S+GG  + ++++++    +LG
Sbjct: 196 LPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLG 241


>pdb|2QQH|A Chain A, Structure Of C8a-Macpf Reveals Mechanism Of Membrane
           Attack In Complement Immune Defense
          Length = 334

 Score = 30.4 bits (67), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 180 VPSSWDPFALARFIEKYGTHIIVGLSIGG--QDVVLVNQDNSSNLG 223
           +P  ++    A+FI  YGTH I   S+GG  + ++++++    +LG
Sbjct: 191 LPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLG 236


>pdb|3OJY|A Chain A, Crystal Structure Of Human Complement Component C8
          Length = 554

 Score = 30.0 bits (66), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 180 VPSSWDPFALARFIEKYGTHIIVGLSIGG--QDVVLVNQDNSSNLG 223
           +P  ++    A+FI  YGTH I   S+GG  + ++++++    +LG
Sbjct: 291 LPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLG 336


>pdb|4A7K|A Chain A, Bifunctional Aldos-2-Ulose Dehydratase
 pdb|4A7Y|A Chain A, Active Site Metal Depleted Aldos-2-Ulose Dehydratase
 pdb|4A7Z|A Chain A, Complex Of Bifunctional Aldos-2-ulose Dehydratase With The
           Reaction Intermediate Ascopyrone M
          Length = 900

 Score = 29.6 bits (65), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 117 QNSAIPGKIPSGLFNNMFNFHSGSWAKDAGNTKYLGLDGYYIILFNVHIDRYPLVLSDEV 176
           Q   + G  P G +   F F S S       +K   + GY +  +++  D   LV     
Sbjct: 23  QPQLVQGGRPDGYWVEAFPFRSDS-------SKCPNIIGYGLGTYDMKSDIQMLVNPYAT 75

Query: 177 RNAVPSSWDPFALARFIEKYGTHIIVGLSIGGQDVVLVNQDNSS 220
            N   SSW P  LA+       H       G  DV++ +Q  SS
Sbjct: 76  TNNQSSSWTPVPLAKLDFPVAMHYADITKNGFNDVIITDQYGSS 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,059,499
Number of Sequences: 62578
Number of extensions: 842868
Number of successful extensions: 1590
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1586
Number of HSP's gapped (non-prelim): 8
length of query: 626
length of database: 14,973,337
effective HSP length: 105
effective length of query: 521
effective length of database: 8,402,647
effective search space: 4377779087
effective search space used: 4377779087
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)