Query 006910
Match_columns 626
No_of_seqs 235 out of 524
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 16:14:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00482 membrane-attack compl 99.9 3.5E-25 7.7E-30 254.2 16.0 328 36-395 242-623 (844)
2 smart00457 MACPF membrane-atta 99.9 7.4E-25 1.6E-29 215.9 16.1 168 151-341 3-194 (194)
3 PF01823 MACPF: MAC/Perforin d 99.9 1E-25 2.2E-30 221.4 6.9 177 146-339 18-212 (212)
4 PTZ00481 Membrane attack compl 99.8 4.7E-19 1E-23 188.2 12.8 148 158-340 188-347 (524)
5 PF12651 RHH_3: Ribbon-helix-h 19.0 98 0.0021 23.7 2.3 18 325-342 25-42 (44)
6 PRK00523 hypothetical protein; 18.5 84 0.0018 27.0 1.9 17 332-348 26-42 (72)
7 PRK01844 hypothetical protein; 17.4 93 0.002 26.7 2.0 17 332-348 25-41 (72)
8 PF03983 SHD1: SLA1 homology d 13.1 2.4E+02 0.0051 24.2 3.3 23 594-616 17-39 (70)
9 TIGR02834 spo_ytxC putative sp 12.6 95 0.002 33.1 1.0 45 311-360 146-193 (276)
10 KOG0143 Iron/ascorbate family 12.3 1.2E+02 0.0026 32.8 1.7 32 477-508 221-256 (322)
No 1
>PTZ00482 membrane-attack complex/perforin (MACPF) Superfamily; Provisional
Probab=99.92 E-value=3.5e-25 Score=254.18 Aligned_cols=328 Identities=18% Similarity=0.190 Sum_probs=194.3
Q ss_pred HHHhhhcceeeeeccCccccc----cCCCCC--ceEEec-----CCC-cceeeEecCCeeeeeeccceeeecCCceEEee
Q 006910 36 VERAISSLGKGFDLTSDFRLK----YCKGKE--RLVVLN-----DAD-HEREITVPGFGSVNEVSIDIKCDKGDRTRYQS 103 (626)
Q Consensus 36 a~~ai~~LG~GyDIt~D~rl~----~ck~gs--r~i~id-----~~~-~~r~~~iP~gv~v~~v~~~~kC~k~~s~~y~S 103 (626)
..+++++||.||||+..-.+. .-++|= .++... ++. +.+.+-.|-|+ .+|....|.+++....-+
T Consensus 242 ~~~gleYLG~GYDIi~GNPlGd~~~~vDPGYR~pII~~~~~~n~~~~~nd~~~~~P~G~---wIR~e~sC~rSe~i~eI~ 318 (844)
T PTZ00482 242 VFPGLYFLGIGYDSLFGNPLGEPDSLTDPGYRGQIILMNWAQSNDGVANDLATLQPLNG---WIRKENACSRSESIKECS 318 (844)
T ss_pred ccccceecccceeceecCCCCCccccCCCcccchhhcccccccccccCccccccCCCCc---eeccccceeccccceeec
Confidence 378999999999999321111 122221 222221 010 22345667674 348899999985554444
Q ss_pred hhHhHHHHHHHhccccccccccC-CcceeEEEEEccccccccc-cccceEEEEeEEEEEEEEEEcC-CCCCCCHHHHhh-
Q 006910 104 DILNFNQMSEFFNQNSAIPGKIP-SGLFNNMFNFHSGSWAKDA-GNTKYLGLDGYYIILFNVHIDR-YPLVLSDEVRNA- 179 (626)
Q Consensus 104 ~v~~~~qmss~fn~~~slggkIp-sG~fna~f~~~sGS~skda-s~tKsfa~~~~~i~ly~~~L~~-~~L~Ls~eF~~a- 179 (626)
+ +++....++.+.++++.++ .+.|+|+.+| .......+ ..+|.|+.. .+|..|.+.|.. .+..|+++|+++
T Consensus 319 s---isdy~ksLS~dasvsgs~~g~~sFSAS~gY-k~f~~~lskk~~k~fi~k-s~C~~Y~~~L~~~~~~~Lt~~F~~aL 393 (844)
T PTZ00482 319 S---LSDYTKNLSAEASVSGSYMGINSFSASTGY-KKFLQEVSKRTTKTYLLK-SNCVKYTAGLPPYFKWNQTTAFKNAV 393 (844)
T ss_pred c---HHHhhhheeeeeecccccccceeeecccch-HHHHHHHhhcceeEEEEe-eeEEEEEEeccccCCCccCHHHHHHH
Confidence 4 4555566777888877755 3446555555 21111111 233456655 499999999998 445699999999
Q ss_pred --CCCCCC------------------------HHHHHHHHHccceEEEEeeEEcceEEEEEeeeccCCCCH-HHHHhhHh
Q 006910 180 --VPSSWD------------------------PFALARFIEKYGTHIIVGLSIGGQDVVLVNQDNSSNLGP-SELKKHLD 232 (626)
Q Consensus 180 --LP~~yd------------------------p~~Y~~FIe~YGTHyItsvtLGGkdv~~vkq~~sS~ls~-sEvk~cL~ 232 (626)
||..|+ ...|++||++|||||+++++|||+-...+ +.+ +.+. +..+.|++
T Consensus 394 ~~LP~~f~~~~~~~~Cs~~~Y~~n~~~e~C~~i~~W~~f~~~yGTH~~~~~~lGG~I~~~~-~le--~s~~e~lkk~~ls 470 (844)
T PTZ00482 394 NGLPPVFDGLEAESECSSDVYEQDKTAEECENVPIWISFFEQYGTHIIMELQLGGKITKQV-TVK--NSSVEQMKKDGVS 470 (844)
T ss_pred HhcchhhhcccccccCCHHHhhhcccccccccHHHHHHHHHHcCceEEEEEEeccEEEEEE-Eec--chhHHHHHhcCcc
Confidence 899887 35699999999999999999999933222 122 2232 34667877
Q ss_pred hccceEE--eeeeccCCcccccCCCCCCCccccCCCCCcccccccccccCCeeEEeeecCCCC-----ChhcHHHHHhcC
Q 006910 233 DLGDQLF--TGTCNFTPNIKEQKNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGDP-----SAYSHCEWLLTV 305 (626)
Q Consensus 233 ~~a~~~f--~~~~~sss~~~~~k~~~~~sf~~~~~~~~~er~~sev~~~edl~vI~~~rGG~~-----~~~~~s~Wl~SV 305 (626)
+++.+.. ...+...+.....+.....++++ ...++ . ++ ++||.+ ++..|.+|++||
T Consensus 471 VkA~~k~~~g~~S~ggs~~~ss~~eskss~~~----~~~sk---------~-t~---ViGG~~~~d~~d~~~~~~W~~SV 533 (844)
T PTZ00482 471 VKAQVKAQFGFASAGGSTNVSSDNSSASNEYS----YNMSE---------Q-LL---VIGGNPIKDVTKEENLAEWSKTV 533 (844)
T ss_pred eeeeehhccccceecccccccchhhhhhhhhh----hccce---------E-EE---EECCCCCCCCCChHHHHHHHHHh
Confidence 7776443 11111110000000011111211 00111 1 21 568853 456899999999
Q ss_pred CCCCceeeeecccccccccCChhhhHHHHHHHHHHHhC-CCccchhhhhhhcc--cccccc-ccCCCCCCCCCCCCCCCC
Q 006910 306 PSNPDAVHFNFIPITSLLKGVPGKGFLSHAINLYLRYK-PPITDLQYFLEFQA--HKVWAP-IHNDLPLGPTTNMTNPSP 381 (626)
Q Consensus 306 ~~nPdvI~~kL~PI~eLl~~~pkk~nLk~AI~~YL~~K-p~ieeL~~fleFq~--P~~wAP-~~~~lpl~~~~r~~~~~p 381 (626)
+.+|++|+++|.||++||+...+|++|++||+.|++-. -.+++..+--|.-| =.+|+- +.++-+ -.-...||
T Consensus 534 ~~nP~pI~~~l~PI~~Ll~~~~~ke~y~kAI~~Yi~l~G~~p~~~~~~~~~~I~~~l~~~t~i~~~g~----~~i~a~CP 609 (844)
T PTZ00482 534 STLPMPINIELLPISTLFPSDDLKESYEKAVIYYSRLYGLSPHDTMQKDEKDIVKILTAATTVTWSGA----PPISAECP 609 (844)
T ss_pred hcCCcceEEEeEEHHHhcCChhhHHHHHHHHHHHHHHhCCChhHhhccccccHHHHHhhCcEEeecCC----CceeEECC
Confidence 99999999999999999999889999999999999953 33333111001000 012222 222111 01223688
Q ss_pred ceeEEeecceeeee
Q 006910 382 ALHFHLMGPKLYVN 395 (626)
Q Consensus 382 ~l~fs~~gpkl~v~ 395 (626)
.=+--+||-=|-++
T Consensus 610 ~g~vIlfGFiL~~~ 623 (844)
T PTZ00482 610 HGQVVLFGFAMRQN 623 (844)
T ss_pred CCCEEEEEEEEEee
Confidence 88877887776554
No 2
>smart00457 MACPF membrane-attack complex / perforin.
Probab=99.92 E-value=7.4e-25 Score=215.86 Aligned_cols=168 Identities=24% Similarity=0.413 Sum_probs=119.6
Q ss_pred EEEEeEEEEEEEEEEcCCCCCCCHHHHhh---CCCCCCHHHHHHHHHccceEEEEeeEEcce-E-EEEEeee--ccCCCC
Q 006910 151 LGLDGYYIILFNVHIDRYPLVLSDEVRNA---VPSSWDPFALARFIEKYGTHIIVGLSIGGQ-D-VVLVNQD--NSSNLG 223 (626)
Q Consensus 151 fa~~~~~i~ly~~~L~~~~L~Ls~eF~~a---LP~~ydp~~Y~~FIe~YGTHyItsvtLGGk-d-v~~vkq~--~sS~ls 223 (626)
++++++.|.+|++++. ++.|+++|.++ ||..|++++|++||++||||||+++++||+ . ++.+.++ ...+++
T Consensus 3 ~~~~~v~~~~y~~~~~--~~~l~~~f~~~l~~Lp~~~~~~~~~~fi~~yGTH~i~s~~~Gg~~~~~~~~~~~~~~~~~~~ 80 (194)
T smart00457 3 VARWTVRNRLYSVKLD--DIPLALEFLKALRDLPDQYNRGAYARFIDKYGTHYITSATLGGEYSLLLVLDKKSLERKGLT 80 (194)
T ss_pred EEEEEEEEEEEEecCC--CCCcCHHHHHHHHhCccccCHHHHHHHHHHhCCeEEEeeeeeeeEEEEEEEcHHHHHhcCCC
Confidence 5677777777776665 57799999997 999999999999999999999999999999 3 3333333 344799
Q ss_pred HHHHHhhHhhccceEEeeeeccCCccccc--CCCCCCCccccCCCCCcccccccccccCCeeEEeeecCCC---------
Q 006910 224 PSELKKHLDDLGDQLFTGTCNFTPNIKEQ--KNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGD--------- 292 (626)
Q Consensus 224 ~sEvk~cL~~~a~~~f~~~~~sss~~~~~--k~~~~~sf~~~~~~~~~er~~sev~~~edl~vI~~~rGG~--------- 292 (626)
.+++++|++. +...|.. +.+...+... +.+...++. ..+..+ .++||.
T Consensus 81 ~~~i~~cl~~-~~~~~~~-~~s~~~c~~~~~~~~~~~~~~----------------~~~~~~---~v~GG~~~~~~~l~~ 139 (194)
T smart00457 81 SEDISTCLGG-SSNSFAG-SVSAEHCLQFSSYSKYLSTSL----------------RRLSHT---QVLGGHVTVLCDLLR 139 (194)
T ss_pred HHHHHhhhce-eeeEEEE-eecCceecccccccccccccc----------------cceeeE---EEeCCchHHHHHHhc
Confidence 9999999997 3333321 1111000000 001011110 000111 134552
Q ss_pred ---CChhcHHHHHhcCCCCCceeeeecccccccccCCh---hhhHHHHHHHHHHH
Q 006910 293 ---PSAYSHCEWLLTVPSNPDAVHFNFIPITSLLKGVP---GKGFLSHAINLYLR 341 (626)
Q Consensus 293 ---~~~~~~s~Wl~SV~~nPdvI~~kL~PI~eLl~~~p---kk~nLk~AI~~YL~ 341 (626)
.++..|++|++||+.+|++|++++.||++||++.| ++++|++||++||.
T Consensus 140 ~~~~~~~~~~~W~~sv~~~p~~I~~~l~Pi~~lv~~~~~~~~~~~l~~Al~~Yl~ 194 (194)
T smart00457 140 GPSTNSLDFSDWAESVPNEPVLIDVSLAPIYELLPPNPLSQKREALRQALRSYLK 194 (194)
T ss_pred CCCCChHHHHHHHHHhhhCCceeEEeeEEHHHHhcCcchHHHHHHHHHHHHHHhC
Confidence 24468999999999999999999999999999985 99999999999983
No 3
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=99.92 E-value=1e-25 Score=221.41 Aligned_cols=177 Identities=24% Similarity=0.395 Sum_probs=125.5
Q ss_pred cccceEEEEeEEEEEEEEEEc-CCCCCCCHHHHhh---CCCCCCHHH---HHHHHHccceEEEEeeEEcce-EEEE-Eee
Q 006910 146 GNTKYLGLDGYYIILFNVHID-RYPLVLSDEVRNA---VPSSWDPFA---LARFIEKYGTHIIVGLSIGGQ-DVVL-VNQ 216 (626)
Q Consensus 146 s~tKsfa~~~~~i~ly~~~L~-~~~L~Ls~eF~~a---LP~~ydp~~---Y~~FIe~YGTHyItsvtLGGk-dv~~-vkq 216 (626)
..+..|++....|.+|++.|. ..++.|+++|+++ ||..|++.. |.+||++|||||+++++|||+ ..++ +++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~F~~~l~~L~~~~~~~~~~~y~~f~~~yGTH~v~~~~lGG~~~~~~~~~~ 97 (212)
T PF01823_consen 18 SSSNKFIISKSNCSRYQFSLNDSDDLPLTPEFLSDLNALPAEYNSDNTDEYYRFFDKYGTHYVTSVTLGGKLIYIYSVSK 97 (212)
T ss_dssp STTEEEEEEEEEEEEEEEEE-HSSSBHBGHHHHHHHHTSHSS--HHHHHHHHHHHHHH-SEEEEEEEEEEEEEEEEEEEH
T ss_pred cccEEEEEEEEEEEEEEEEEecCCCCCcCHHHHHHHHhhCcccCccchHHHHHHHHHhCcEEEEEEEEcceeEEEEEeee
Confidence 445569999999999999994 4688899999777 999999988 999999999999999999999 4333 333
Q ss_pred ec--cCCCCHHHHHhhHhhccceEEeeeeccCCcccccCCCCCCCccccCCCCCcccccccccccCCeeEEeeecCCCC-
Q 006910 217 DN--SSNLGPSELKKHLDDLGDQLFTGTCNFTPNIKEQKNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGDP- 293 (626)
Q Consensus 217 ~~--sS~ls~sEvk~cL~~~a~~~f~~~~~sss~~~~~k~~~~~sf~~~~~~~~~er~~sev~~~edl~vI~~~rGG~~- 293 (626)
+. .......+++.|++..+.+.+...............+....+.. ...... ..++||++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~--~~~~GG~~~ 160 (212)
T PF01823_consen 98 SSLESSKESSIEMKICVSASASASFAGVSVSGSASNSSSQSQSSSFSQ---------------SNSSSS--IIVIGGDPS 160 (212)
T ss_dssp HHHHHTTSSHHHHHHHHHHHHHHHTHCHCCCHHTCTTTHHHHCCHHHC---------------HEEEEE--EEEESS-CT
T ss_pred hhhccccccchhhhheeeeeeeeeecccccccccccCccccccccccc---------------cceeEE--EEEECCccc
Confidence 33 34566778789999988766632222110000000000000100 011222 33679986
Q ss_pred -----ChhcHHHHHhcCCCCCceeeeecccccccccCCh-hhhHHHHHHHHH
Q 006910 294 -----SAYSHCEWLLTVPSNPDAVHFNFIPITSLLKGVP-GKGFLSHAINLY 339 (626)
Q Consensus 294 -----~~~~~s~Wl~SV~~nPdvI~~kL~PI~eLl~~~p-kk~nLk~AI~~Y 339 (626)
+..++.+|.+||.++|.+|+++|.||++|++..+ +|++|++||++|
T Consensus 161 ~~~~~~~~~~~~W~~sv~~~p~~i~~~l~PI~~li~~~~~k~~~l~~ai~~Y 212 (212)
T PF01823_consen 161 SAAASDNDNFSEWASSVKDNPVPIDFELQPIYDLIPDNPFKKENLKKAIEEY 212 (212)
T ss_dssp THHCCCHHHHHHHHHHHCTS-EEEEEEEEEGGGGGCTTTTHHHHHHHHHHHH
T ss_pred cccccCcccHHHHHHHHhCCCeeEEEEeEEHHHHcCCcHHHHHHHHHHHHhC
Confidence 4679999999999999999999999999999998 999999999998
No 4
>PTZ00481 Membrane attack complex/ Perforin (MACPF) Superfamily; Provisional
Probab=99.79 E-value=4.7e-19 Score=188.22 Aligned_cols=148 Identities=22% Similarity=0.283 Sum_probs=118.9
Q ss_pred EEEEEEEEcCCCCCCCHHHHhh---CCCCCCHHHHHHHHHccceEEEEeeEEcce--EEEEEeeecc------CCCCHHH
Q 006910 158 IILFNVHIDRYPLVLSDEVRNA---VPSSWDPFALARFIEKYGTHIIVGLSIGGQ--DVVLVNQDNS------SNLGPSE 226 (626)
Q Consensus 158 i~ly~~~L~~~~L~Ls~eF~~a---LP~~ydp~~Y~~FIe~YGTHyItsvtLGGk--dv~~vkq~~s------S~ls~sE 226 (626)
-.+.+.+|+.+.++|+++|+++ ||.+||+++|++||++|||||+++++|||. .+|.+|+|.. .|++.++
T Consensus 188 Knv~r~~mRsdnLmLh~eFqraL~~LP~eYd~g~Y~~FIe~YGTHYITsv~LGG~VE~vTs~RtC~~slps~~~GlS~~q 267 (524)
T PTZ00481 188 KNVIRMTFKTDNLKLNRFAQRAIDALPEDYQPDVYNEFLNAWGTHISVDTFIGGMIEKQTVFKDCVFFTPQFNGGLSPEQ 267 (524)
T ss_pred heeEEEEEecCCceeCHHHHHHHHhcchhcCHHHHHHHHHhcCceEEEEeeEcCEEEEEeehhhhhhhchhhhcCCCHHH
Confidence 3567788999999999999999 999999999999999999999999999999 5889999973 3899999
Q ss_pred HHhhHhhccceEEeeeeccCCcccccCCCCCCCccccCCCCCcccccccccccCCeeEEeeecCCCCChhcHHHHHhcCC
Q 006910 227 LKKHLDDLGDQLFTGTCNFTPNIKEQKNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGDPSAYSHCEWLLTVP 306 (626)
Q Consensus 227 vk~cL~~~a~~~f~~~~~sss~~~~~k~~~~~sf~~~~~~~~~er~~sev~~~edl~vI~~~rGG~~~~~~~s~Wl~SV~ 306 (626)
|+.||..++..... .+-|.. |. +...+++ -||. +++-.+|.+|+.
T Consensus 268 Vk~cLn~ELqgn~~----------------~Gy~~~--------rr---kvslD~i------~GGN--PE~i~nr~~Tfs 312 (524)
T PTZ00481 268 VEQALRNELNGNPA----------------EGFFTA--------RR---QVTLDHK------FGGN--PEDVANWEQTIS 312 (524)
T ss_pred HHHHHHHHhcCCCC----------------ccceee--------ee---eeehhhh------cCCC--hhHhhhhhhhhc
Confidence 99999999862210 111111 11 0011122 2775 457899999999
Q ss_pred CCCceeeeecccccccccCCh-hhhHHHHHHHHHH
Q 006910 307 SNPDAVHFNFIPITSLLKGVP-GKGFLSHAINLYL 340 (626)
Q Consensus 307 ~nPdvI~~kL~PI~eLl~~~p-kk~nLk~AI~~YL 340 (626)
.||+++++.-.||++-++..| .|+||.+||..-+
T Consensus 313 ~NPvplK~n~ipiW~afpagpqvk~NlqqaI~nri 347 (524)
T PTZ00481 313 QNPALLKINRFLSWDNLTANPQVKANLQQAIMNRI 347 (524)
T ss_pred cCceeeeeeeeeehhhcccCcHHHHHHHHHHHHHH
Confidence 999999999999999998866 5999999998654
No 5
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=19.00 E-value=98 Score=23.69 Aligned_cols=18 Identities=33% Similarity=0.623 Sum_probs=15.9
Q ss_pred CChhhhHHHHHHHHHHHh
Q 006910 325 GVPGKGFLSHAINLYLRY 342 (626)
Q Consensus 325 ~~pkk~nLk~AI~~YL~~ 342 (626)
++|+..-+++||++||+.
T Consensus 25 ~i~~S~Ll~eAle~~l~k 42 (44)
T PF12651_consen 25 GIPKSKLLREALEDYLEK 42 (44)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 478999999999999985
No 6
>PRK00523 hypothetical protein; Provisional
Probab=18.51 E-value=84 Score=27.00 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhCCCccc
Q 006910 332 LSHAINLYLRYKPPITD 348 (626)
Q Consensus 332 Lk~AI~~YL~~Kp~iee 348 (626)
-++-++.||+++|||.|
T Consensus 26 ark~~~k~l~~NPpine 42 (72)
T PRK00523 26 SKKMFKKQIRENPPITE 42 (72)
T ss_pred HHHHHHHHHHHCcCCCH
Confidence 46778899999999987
No 7
>PRK01844 hypothetical protein; Provisional
Probab=17.44 E-value=93 Score=26.74 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCCCccc
Q 006910 332 LSHAINLYLRYKPPITD 348 (626)
Q Consensus 332 Lk~AI~~YL~~Kp~iee 348 (626)
-++-++.||+++|||.|
T Consensus 25 ark~~~k~lk~NPpine 41 (72)
T PRK01844 25 ARKYMMNYLQKNPPINE 41 (72)
T ss_pred HHHHHHHHHHHCCCCCH
Confidence 46778899999999987
No 8
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=13.13 E-value=2.4e+02 Score=24.16 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=19.0
Q ss_pred CCCcceEEeeeeeeecCceEEEE
Q 006910 594 DSPGHWLVTGAKLDLEKGKICLR 616 (626)
Q Consensus 594 d~pg~w~vtgakl~~~~gki~l~ 616 (626)
|.-|.+-|-+.-|.+.+|||.||
T Consensus 17 D~tG~f~VeA~fv~~~dgkV~L~ 39 (70)
T PF03983_consen 17 DRTGKFKVEAEFVGVNDGKVHLH 39 (70)
T ss_dssp BSSS--EEEEEEEEEETTEEEEE
T ss_pred eCCCCEEEEEEEEEeeCCEEEEE
Confidence 45689999999999999999998
No 9
>TIGR02834 spo_ytxC putative sporulation protein YtxC. This uncharacterized protein is part of a panel of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and nowhere else.
Probab=12.63 E-value=95 Score=33.08 Aligned_cols=45 Identities=31% Similarity=0.445 Sum_probs=32.4
Q ss_pred eeeeecccccccccCChhhhHHHHHHHHHHHhC---CCccchhhhhhhccccc
Q 006910 311 AVHFNFIPITSLLKGVPGKGFLSHAINLYLRYK---PPITDLQYFLEFQAHKV 360 (626)
Q Consensus 311 vI~~kL~PI~eLl~~~pkk~nLk~AI~~YL~~K---p~ieeL~~fleFq~P~~ 360 (626)
.|.|.|.+..+- -+.....||++|+.+| -=|+-|+||++.|-|+.
T Consensus 146 FitFRLk~y~~~-----L~~~Ve~aidEy~~EkEYqeFI~lLryFV~~Qe~ki 193 (276)
T TIGR02834 146 FVTFRLKPYVEE-----LRDIVEKAIDEYLMEKEYQEFIKLLRYFVEIQDSRL 193 (276)
T ss_pred ceeeehHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCc
Confidence 344555555433 3677889999999987 34777899999987764
No 10
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=12.27 E-value=1.2e+02 Score=32.78 Aligned_cols=32 Identities=34% Similarity=0.576 Sum_probs=23.5
Q ss_pred cCCCccCCC--CceEEEe-cceEEEeecC-CceeEE
Q 006910 477 YDPKWATRK--DVSFIVT-GAQLHVQKHE-SKSILH 508 (626)
Q Consensus 477 ~~~~~~~~~--~~~~ivt-ga~l~v~~~~-~~~vl~ 508 (626)
.|..|+.-. .+++||- |.||+++..| .|+|+|
T Consensus 221 ~dg~Wi~V~P~p~a~vVNiGD~l~~lSNG~ykSv~H 256 (322)
T KOG0143|consen 221 KDGKWIDVPPIPGAFVVNIGDMLQILSNGRYKSVLH 256 (322)
T ss_pred cCCeEEECCCCCCCEEEEcccHHhHhhCCcccceEE
Confidence 366666332 2566666 9999999988 888998
Done!