Query 006910
Match_columns 626
No_of_seqs 235 out of 524
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 12:12:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nsj_A Perforin-1; pore formin 100.0 1.3E-46 4.5E-51 419.5 16.6 314 37-384 17-380 (540)
2 3ojy_A Complement component C8 100.0 1.7E-45 5.7E-50 411.7 17.7 314 37-383 116-492 (554)
3 3ojy_B Complement component C8 100.0 7.2E-46 2.4E-50 413.7 14.6 310 38-383 116-474 (537)
4 3t5o_A Complement component C6 100.0 1.2E-43 4.1E-48 417.4 12.8 312 37-382 166-524 (913)
5 2rd7_A Complement component C8 100.0 4.5E-42 1.6E-46 366.9 17.6 286 36-341 20-367 (367)
6 2qp2_A Unknown protein; toxin, 100.0 1.5E-36 5.3E-41 336.1 9.4 325 34-417 36-426 (511)
7 3kk7_A Putative cell invasion 99.5 3E-15 1E-19 162.2 1.1 184 149-342 157-369 (541)
8 3u7d_B Protein HEG homolog 1; 26.7 19 0.00065 23.4 0.7 18 469-486 3-20 (26)
9 2i46_A Adrenocortical dysplasi 25.9 37 0.0013 31.3 2.7 39 575-617 24-66 (161)
10 4fxv_A ELAV-like protein 1; RN 17.5 75 0.0026 26.3 2.8 29 176-206 23-51 (99)
No 1
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=100.00 E-value=1.3e-46 Score=419.48 Aligned_cols=314 Identities=16% Similarity=0.216 Sum_probs=247.1
Q ss_pred HHhhhcceeeeeccC-cc----ccccCCC---CCceEEecCCC-cceeeEecCCeeeeeeccc-eeeecC-CceEEeehh
Q 006910 37 ERAISSLGKGFDLTS-DF----RLKYCKG---KERLVVLNDAD-HEREITVPGFGSVNEVSID-IKCDKG-DRTRYQSDI 105 (626)
Q Consensus 37 ~~ai~~LG~GyDIt~-D~----rl~~ck~---gsr~i~id~~~-~~r~~~iP~gv~v~~v~~~-~kC~k~-~s~~y~S~v 105 (626)
.++++.+|.||||+. +. -+|+-.+ ||.|..+.+.. ....||+|+|+ .+|+++ ++|++. +++.|+|..
T Consensus 17 ~Pg~~l~G~G~nilt~e~~g~~VlD~~~~~~~~G~C~~c~~~~~~~~~~RlP~nv--~~~~~~~~~~~~~~s~e~y~s~~ 94 (540)
T 3nsj_A 17 VPGVWMAGEGMDVTTLRRSGSFPVNTQRFLRPDRTCTLCKNSLMRDATQRLPVAI--THWRPHSSHCQRNVAAAKVHSTE 94 (540)
T ss_dssp CTTGGGTTCEEETTTTEECSCCSBCCCCCSCTTSCEEEEEETTTTTEEEEECTTE--EEEEECCSCCCCCCEEEEECSHH
T ss_pred CCChHHhcCCEEEecCcccCCEeEechhccCCCCeeeEecccccCCceeecccee--eeEEEEEeeeeeeechhhcccHH
Confidence 579999999999994 33 4776776 57897766332 22349999994 578999 999999 999999999
Q ss_pred HhHHHHHHHhccccccccccC-CcceeEEEEEccccccccc--cc------cceEEEEeEEEEEEEEEEcCCCCCCCHHH
Q 006910 106 LNFNQMSEFFNQNSAIPGKIP-SGLFNNMFNFHSGSWAKDA--GN------TKYLGLDGYYIILFNVHIDRYPLVLSDEV 176 (626)
Q Consensus 106 ~~~~qmss~fn~~~slggkIp-sG~fna~f~~~sGS~skda--s~------tKsfa~~~~~i~ly~~~L~~~~L~Ls~eF 176 (626)
.+++++++..+++|+++++|+ .+.+++++++ ++++++.+ +. +.+|+++...|++|+|+|.. +++|+++|
T Consensus 95 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~-~~s~s~~~~~a~~~s~~~~~~F~~~~~~~~~~~~~~~~-~~~L~~~F 172 (540)
T 3nsj_A 95 GVAREAAANINNDWRVGLDVNPRPEANMRASV-AGSHSKVANFAAEKTYQDQYNFNSDTVECRMYSFRLVQ-KPPLHLDF 172 (540)
T ss_dssp HHHHHHHTTBCSCTTTTSCCC-CCSTTTTCBC-TTTTSHHHHHHHHHHHHSCEEEEEEEEEEEEEEEEECS-SCCBCHHH
T ss_pred HHHHHHhhhcccccceeeecccccccceeEEe-ecccchhhHHHHHhhhccceEEEEEEEEEEEEEEEeCC-CCCCCHHH
Confidence 999999999999999999987 2234556667 77776544 22 23499999999999999984 78899999
Q ss_pred Hhh---CCCCCCH---HHHHHHHHccceEEEEeeEEcce-E-EEEEeee--ccCCCCHHHHHhhHhhccceEEe-eeecc
Q 006910 177 RNA---VPSSWDP---FALARFIEKYGTHIIVGLSIGGQ-D-VVLVNQD--NSSNLGPSELKKHLDDLGDQLFT-GTCNF 245 (626)
Q Consensus 177 ~~a---LP~~ydp---~~Y~~FIe~YGTHyItsvtLGGk-d-v~~vkq~--~sS~ls~sEvk~cL~~~a~~~f~-~~~~s 245 (626)
+++ ||..||+ ++|++||++||||||++++|||+ + +++++++ +.++++.+|+++||+.++++++. ....+
T Consensus 173 ~~~l~~LP~~~~~~~~~~Y~~fi~~yGTHyi~s~~lGG~~~~i~~~~~~~~~~~~~t~~ev~~Cl~~e~~~~~~~~~~~~ 252 (540)
T 3nsj_A 173 KKALRALPRNFNSSTEHAYHELISSYGTHFITAVDLGGRISVLTALRTCQLTLNGLTADEVGDCLNVEAQVSIGAQASVS 252 (540)
T ss_dssp HHHHHTSCSSCCSSTHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHHHHTTCCHHHHHHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHhcccccCcccHHHHHHHHHhcCcEEEEeeeccceEEEEEEEehHhHhhcCCCHHHHHHHHhhcccEEEEEeEeec
Confidence 998 9999999 99999999999999999999999 4 4566754 56799999999999988876653 12111
Q ss_pred C-Cc-cccc--CCCCCCCccccCCCCCcccccccccccCCeeEEeeecCCC------------CChhcHHHHHhcCCCCC
Q 006910 246 T-PN-IKEQ--KNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGD------------PSAYSHCEWLLTVPSNP 309 (626)
Q Consensus 246 s-s~-~~~~--k~~~~~sf~~~~~~~~~er~~sev~~~edl~vI~~~rGG~------------~~~~~~s~Wl~SV~~nP 309 (626)
. .+ .++. +.+...+|++ ..++.. ..+|||. .+++.|++|++||+++|
T Consensus 253 ~~~~~C~~~~~~~~~~~~~~~---------------~~~~~~--~~V~GG~~~~~~~L~~~~~~~p~~~~~W~~Sv~~~P 315 (540)
T 3nsj_A 253 SEYKACEEKKKQHKMATSFHQ---------------TYRERH--VEVLGGPLDSTHDLLFGNQATPEQFSTWTASLPSNP 315 (540)
T ss_dssp HHHHHHHHHHHHTTCSSCHHH---------------HCCCEE--EEEESSCGGGCCCSSSCSSCCHHHHHHHHHHTTTSC
T ss_pred ccccccccccccccccCCccc---------------ccceEE--EEEeCCCccchhhhhcccCCCHHHHHHHHHHHhhCC
Confidence 1 11 1111 2233444443 223443 3477885 24678999999999999
Q ss_pred ceeeeecccccccccC-ChhhhHHHHHHHHHHHhCCCccchhhhhhhcccc-ccc-cccCCCCCCCCCCCCCCCCcee
Q 006910 310 DAVHFNFIPITSLLKG-VPGKGFLSHAINLYLRYKPPITDLQYFLEFQAHK-VWA-PIHNDLPLGPTTNMTNPSPALH 384 (626)
Q Consensus 310 dvI~~kL~PI~eLl~~-~pkk~nLk~AI~~YL~~Kp~ieeL~~fleFq~P~-~wA-P~~~~lpl~~~~r~~~~~p~l~ 384 (626)
++|+++|.|||+||+. .+||+||++||++||.+ | .|| +|+ ||+||.+...+..|.|+||.-.
T Consensus 316 ~~I~~~l~PI~~Lv~~~~~kr~nLk~Ai~~Yl~e------------~-~~c~~C~~PC~nn~~~l~g~~C~C~C~~~~ 380 (540)
T 3nsj_A 316 GLVDYSLEPLHTLLEEQNPKREALRQAISHYIMS------------R-ARWQNCSRPCRSGQHKSSHDSCQCECQDSK 380 (540)
T ss_dssp EEEEEEEEEGGGGSCTTCTHHHHHHHHHHHHHHH------------T-CBCCCTTSCCBTTEEECSSCTTCEEESCTT
T ss_pred ceEEEEEEEHHHhcCCcHHHHHHHHHHHHHHHHh------------c-CchhhhcccccCCCccCCCCceEeeCCCCC
Confidence 9999999999999994 78999999999999996 5 999 997 9999965567899999999753
No 2
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.7e-45 Score=411.70 Aligned_cols=314 Identities=15% Similarity=0.170 Sum_probs=222.6
Q ss_pred HHhhhcceeeeecc-Cccc---cccCCCCCceEEecCCC-----------------cceeeEecCCeeeeeeccceeeec
Q 006910 37 ERAISSLGKGFDLT-SDFR---LKYCKGKERLVVLNDAD-----------------HEREITVPGFGSVNEVSIDIKCDK 95 (626)
Q Consensus 37 ~~ai~~LG~GyDIt-~D~r---l~~ck~gsr~i~id~~~-----------------~~r~~~iP~gv~v~~v~~~~kC~k 95 (626)
.++++.+|.||||+ ++.+ |++.++||.|..+..++ ..+.||+|+|| .+|+++++|+.
T Consensus 116 iPg~~l~g~G~nilt~~~~g~vld~~~~~G~C~~v~~~~~~~~~~~~~c~~~~~~~~~~~~RlP~nv--~~~~~~~~~~~ 193 (554)
T 3ojy_A 116 IPGSQKAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERLYYGDDEKYFRKPYNF--LKYHFEALADT 193 (554)
T ss_dssp CTTHHHHTEEEETTTTEEEEESBCTTCCTTCCEEEECTTTTSCEEEGGGTEEECCGGGSEEEECTTE--EEEEECCCCCC
T ss_pred cCcccccccCEEeccCccccccccccccCCeeeEeecCcccccccccccccccccCCCeeEEcccee--eEEeEEEEEee
Confidence 47899999999999 4554 88888899999987641 11349999995 57899999999
Q ss_pred C-CceEEeehhHhHHHHHHHhccccccccccCCcceeEEEEEccccccccc----------cccceEEEEeEEEEEEEEE
Q 006910 96 G-DRTRYQSDILNFNQMSEFFNQNSAIPGKIPSGLFNNMFNFHSGSWAKDA----------GNTKYLGLDGYYIILFNVH 164 (626)
Q Consensus 96 ~-~s~~y~S~v~~~~qmss~fn~~~slggkIpsG~fna~f~~~sGS~skda----------s~tKsfa~~~~~i~ly~~~ 164 (626)
. +++.|+|...+++++++...++|+++++|+....++.|++ ++++++.+ ..+++|+++...|++|+|+
T Consensus 194 ~~s~e~y~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~s~s~~~~~~~~~~~~~~k~~~F~~~~~~~~~~~f~ 272 (554)
T 3ojy_A 194 GISSEFYDNANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGV-GVSHSQDTSFLNELNKYNEKKFIFTRIFTKVQTAHFK 272 (554)
T ss_dssp CCEEEEESSHHHHHHHHC---------------------------------CTTGGGTTCCSTTEEEEEEEEEEEEEEEE
T ss_pred ecchhhhhcHHHHHHHHHhhhccccceeeecccccceeEEEe-eccccchhHHHHHHHhhcccceEEEEEEEEEEEEEEE
Confidence 9 9999999999999999998888888777752211233333 33333222 1123499999999999999
Q ss_pred EcCCCCCCCHHHHhh---CCCCCCHHHHHHHHHccceEEEEeeEEcce-EEEE-Ee--eeccCCCCHHHHHhhHhhccce
Q 006910 165 IDRYPLVLSDEVRNA---VPSSWDPFALARFIEKYGTHIIVGLSIGGQ-DVVL-VN--QDNSSNLGPSELKKHLDDLGDQ 237 (626)
Q Consensus 165 L~~~~L~Ls~eF~~a---LP~~ydp~~Y~~FIe~YGTHyItsvtLGGk-dv~~-vk--q~~sS~ls~sEvk~cL~~~a~~ 237 (626)
|+.++++|+++|+++ ||..||+++|++||++||||||++++|||+ ++++ ++ +++.+++|.+|+++||+.++++
T Consensus 273 l~~~~l~L~~~F~~~l~~LP~~y~~~~y~~fi~~yGTHyi~s~~lGG~~~~i~~l~~~~~~~sglt~~dvk~Cl~~e~~~ 352 (554)
T 3ojy_A 273 MRKDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGITSRDITTCFGGSLGI 352 (554)
T ss_dssp ECSSSBCBCHHHHHHHHTCCSSCCHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred EeCCCCCCCHHHHHHHHhCCccCCHHHHHHHHHhcCcEEEEeeeeCcEEEEEEEEehhhhhhcCCCHHHHHHHHhhcccE
Confidence 999999999999999 899999999999999999999999999999 7665 45 5567899999999999999998
Q ss_pred EEe---eeeccC-Ccc-ccc--CCCCCCCccccCCCCCcccccccccccCCeeEEeeecCCCC----------ChhcHHH
Q 006910 238 LFT---GTCNFT-PNI-KEQ--KNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGDP----------SAYSHCE 300 (626)
Q Consensus 238 ~f~---~~~~ss-s~~-~~~--k~~~~~sf~~~~~~~~~er~~sev~~~edl~vI~~~rGG~~----------~~~~~s~ 300 (626)
+|. ...... .+. ++. +.+...+|++ ..+++ |..+|||.. +++.|++
T Consensus 353 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~---------------~~~~~--~~~V~GG~~~~~~~L~~~~~~~~~~~ 415 (554)
T 3ojy_A 353 QYEDKINVGGGLSGDHCKKFGGGKTERARKAM---------------AVEDI--ISRVRGGSSGWSGGLAQNRSTITYRS 415 (554)
T ss_dssp CC-------------CCTTTTTTCSHHHHHHT---------------TEEEE--EECCBSCC----------CCCCCHHH
T ss_pred EEeeeeeeeccccccccccccccccccccccc---------------ccceE--EEEEECCCccccchhhcccCHHHHHH
Confidence 772 222121 111 110 0000011111 12243 356899974 3578999
Q ss_pred HHhcCCCCCceeeeeccccccccc--C----ChhhhHHHHHHHHHHHhCCCccchhhhhhhccccccccccCC-CCCCCC
Q 006910 301 WLLTVPSNPDAVHFNFIPITSLLK--G----VPGKGFLSHAINLYLRYKPPITDLQYFLEFQAHKVWAPIHND-LPLGPT 373 (626)
Q Consensus 301 Wl~SV~~nPdvI~~kL~PI~eLl~--~----~pkk~nLk~AI~~YL~~Kp~ieeL~~fleFq~P~~wAP~~~~-lpl~~~ 373 (626)
|++||+++|++|+|+|.|||+||+ + .+||+||++||++||.++ .||.|+||+++ .|...+
T Consensus 416 W~~Sv~~~P~vI~~~l~PI~~Lv~~~~~p~~~~kr~nL~~Ai~~Yl~e~-------------~~c~c~pC~~~g~~~~~g 482 (554)
T 3ojy_A 416 WGRSLKYNPVVIDFEMQPIHEVLRHTSLGPLEAKRQNLRRALDQYLMEF-------------NACRCGPCFNNGVPILEG 482 (554)
T ss_dssp HHHHGGGSCEEEEEEEEEGGGGGGGBTTCCCHHHHHHHHHHHHHHHHHT-------------CGGGSCCCTTTCCEEEET
T ss_pred HHHHHhcCCceEEEEeEeHHHhcCcccCCccHHHHHHHHHHHHHHHhhc-------------ccccccccCCCCEEcCCC
Confidence 999999999999999999999998 3 469999999999999974 89999999987 665566
Q ss_pred CCCCCCCCce
Q 006910 374 TNMTNPSPAL 383 (626)
Q Consensus 374 ~r~~~~~p~l 383 (626)
..|.+.|+.=
T Consensus 483 t~C~c~C~~G 492 (554)
T 3ojy_A 483 TSCRCQCRLG 492 (554)
T ss_dssp TEEEECCCSS
T ss_pred CcccccCCCC
Confidence 7888888664
No 3
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=100.00 E-value=7.2e-46 Score=413.72 Aligned_cols=310 Identities=15% Similarity=0.106 Sum_probs=235.0
Q ss_pred Hhhhcceeeeecc-Cccc---cccCCCCCceEEecCCCcceeeEecCCeeeeeeccceeeecC-CceEEeehhHhHHHH-
Q 006910 38 RAISSLGKGFDLT-SDFR---LKYCKGKERLVVLNDADHEREITVPGFGSVNEVSIDIKCDKG-DRTRYQSDILNFNQM- 111 (626)
Q Consensus 38 ~ai~~LG~GyDIt-~D~r---l~~ck~gsr~i~id~~~~~r~~~iP~gv~v~~v~~~~kC~k~-~s~~y~S~v~~~~qm- 111 (626)
++++.+|.||||+ ++.+ +++-++||.|..+..+ +.+ ||+|+|+ ..|+++++|+.. .++.|+|.+.+++++
T Consensus 116 ~~~~l~G~G~dilt~~~~g~vlD~~~~~G~C~~~~~~-~~~-yRlP~nv--~~~~~~~~~~~~~sse~y~S~~~~~~~~~ 191 (537)
T 3ojy_B 116 WGIGSLASGINLFTNSFEGPVLDHRYYAGGCSPHYIL-NTR-FRKPYNV--ESYTPQTQGKYEFILKEYESYSDFERNVT 191 (537)
T ss_dssp TTGGGGGEEECTTTCCEEEECBCTTCCCSCCEEEEET-TEE-EEECTTE--EEEEECCCCCCCEEEEEESSHHHHTTTSC
T ss_pred ccceecceeEEEecCccccceecccccCCccceeecC-Ccc-EECcccc--eeEeeeeeEeeecchhhhhcHHHHHHHhh
Confidence 3889999999999 4444 8888888899998877 556 9999995 467899999999 999999999999988
Q ss_pred -HHHhccccccccccCCcceeEEEEEccccccccc------cc--cceEEEEeEEEEEEEEEEcCCCCCCCHHHHhh---
Q 006910 112 -SEFFNQNSAIPGKIPSGLFNNMFNFHSGSWAKDA------GN--TKYLGLDGYYIILFNVHIDRYPLVLSDEVRNA--- 179 (626)
Q Consensus 112 -ss~fn~~~slggkIpsG~fna~f~~~sGS~skda------s~--tKsfa~~~~~i~ly~~~L~~~~L~Ls~eF~~a--- 179 (626)
...++.+|+++++|+ +.|+++|++ +.+..... .. +..|+++...|++|+|+|+.++++|+++|+++
T Consensus 192 ~~~s~~~~~~~gl~i~-~~~~~~~~~-s~s~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~L~~~F~~~l~~ 269 (537)
T 3ojy_B 192 EKMASKSGFSFGFKIP-GIFELGISS-QSDRGKHYIRRTKRFSHTKSVFLHARSDLEVAHYKLKPRSLMLHYEFLQRVKR 269 (537)
T ss_dssp C-----CCCBTTTBCC-SCEECCCTT-TSSSSHHHHHHHHTTCSCCEEEEEEEECEEEEEEEECSSSCCBCHHHHHHHTT
T ss_pred hhccccccceeeeecc-cceeEeEee-cccchHHHHHHHHHhhccceEEEEEEEEEEEEEEEEeCCCCCCCHHHHHHHHh
Confidence 677889999999998 456555555 33322111 11 23499999999999999998899999999999
Q ss_pred CCCCCCHHHHHHHHHccceEEEEeeEEcce-EEEE-Ee--eeccCCCCHHHHHhhHhhccceEEe--e--eeccC-Ccc-
Q 006910 180 VPSSWDPFALARFIEKYGTHIIVGLSIGGQ-DVVL-VN--QDNSSNLGPSELKKHLDDLGDQLFT--G--TCNFT-PNI- 249 (626)
Q Consensus 180 LP~~ydp~~Y~~FIe~YGTHyItsvtLGGk-dv~~-vk--q~~sS~ls~sEvk~cL~~~a~~~f~--~--~~~ss-s~~- 249 (626)
||..||+++|++||++||||||++++|||+ ++++ ++ +++.++++.+|+++||+.+++++|. + ...+. .+.
T Consensus 270 LP~~y~~~~y~~fi~~yGTH~i~s~~lGG~~~~i~~~~~~~~~~s~~t~~evk~Cl~~~~~~~~~i~~~~~~~~~~~~~C 349 (537)
T 3ojy_B 270 LPLEYSYGEYRDLFRDFGTHYITEAVLGGIYEYTLVMNKEAMERGDYTLNNVHACAKNDFKIGGAIEEVYVSLGVSVGKC 349 (537)
T ss_dssp CCSSCCHHHHHHHHHHHCSEEEEEEEEEECCEEEEEEEHHHHTTTTCCHHHHHHHTTTC----------------CCSCC
T ss_pred cccccCHHHHHHHHHhcCcEEEEeEeeccEEEEEEEEehHhHhhcCCCHHHHHHHHhcccceeEEeeeeeeecccccccc
Confidence 899999999999999999999999999999 6665 45 5567899999999999999986552 1 11111 111
Q ss_pred ccc--CCCCCCCccccCCCCCcccccccccccCCeeEEeeecCCCC------------ChhcHHHHHhcCCCCCceeeee
Q 006910 250 KEQ--KNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGDP------------SAYSHCEWLLTVPSNPDAVHFN 315 (626)
Q Consensus 250 ~~~--k~~~~~sf~~~~~~~~~er~~sev~~~edl~vI~~~rGG~~------------~~~~~s~Wl~SV~~nPdvI~~k 315 (626)
++. +.+....|+. ..+++ |..+|||.. +++.|++|++||+++|++|+|+
T Consensus 350 ~~~~~~~~~~~~~~~---------------~~~~~--~~~V~GG~~~~~~~L~~~~~~~~~~~~~W~~Sv~~~P~vI~~~ 412 (537)
T 3ojy_B 350 RGILNEIKDRNKRDT---------------MVEDL--VVLVRGGASEHITTLAYQELPTADLMQEWGDAVQYNPAIIKVK 412 (537)
T ss_dssp TTTTTHHHHTTTSSC---------------SEEEE--EEECCSCCSTTCCCCCTSSSCCCSCHHHHHHHHHTSCEEEEEE
T ss_pred ccccccccccccccc---------------cceeE--EEEEeCCCcccchhhhcccCCCHHHHHHHHHHhhcCCceEEEE
Confidence 110 0000111111 11233 355888864 3578999999999999999999
Q ss_pred ccccccccc--C----ChhhhHHHHHHHHHHHhCCCccchhhhhhhccccccccccCC-CCCCCCCCCCCCCCce
Q 006910 316 FIPITSLLK--G----VPGKGFLSHAINLYLRYKPPITDLQYFLEFQAHKVWAPIHND-LPLGPTTNMTNPSPAL 383 (626)
Q Consensus 316 L~PI~eLl~--~----~pkk~nLk~AI~~YL~~Kp~ieeL~~fleFq~P~~wAP~~~~-lpl~~~~r~~~~~p~l 383 (626)
|.|||+||+ + .++|+||++||++||.++ .||+|+||+++ .|...++.|.|.||+-
T Consensus 413 l~PI~eLv~~~~ip~~~~kr~nL~~Ai~~Yl~e~-------------~~c~C~pC~~~~~~~~~gt~C~c~C~~g 474 (537)
T 3ojy_B 413 VEPLYELVTATDFAYSSTVRQNMKQALEEFQKEV-------------SSCHCAPCQGNGVPVLKGSRCDCICPVG 474 (537)
T ss_dssp EEEGGGGCCTTTCTTHHHHHHHHHHHHHHHHHHT-------------CGGGSCCCSTTCEEEEETTEEEEECCTT
T ss_pred eEeHHHhcCcccCCchHHHHHHHHHHHHHHHHHh-------------CcccCCCCCcCCEEecCCCceeccCCCC
Confidence 999999995 3 368999999999999964 99999999998 7877778899999876
No 4
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=100.00 E-value=1.2e-43 Score=417.41 Aligned_cols=312 Identities=17% Similarity=0.218 Sum_probs=233.4
Q ss_pred HHhhhcceeeeeccC-ccc---cccCCCCCceEEecCCCcceeeEecCCeeeeeeccceeeec-C-CceEEeehhHhHHH
Q 006910 37 ERAISSLGKGFDLTS-DFR---LKYCKGKERLVVLNDADHEREITVPGFGSVNEVSIDIKCDK-G-DRTRYQSDILNFNQ 110 (626)
Q Consensus 37 ~~ai~~LG~GyDIt~-D~r---l~~ck~gsr~i~id~~~~~r~~~iP~gv~v~~v~~~~kC~k-~-~s~~y~S~v~~~~q 110 (626)
.++++.+|.||||+. +.+ ||+-++||.|..+.+++....||+|+|+. .|+++.+|++ . .++.|+|...++++
T Consensus 166 iPg~~l~G~G~dilt~~~~g~vlD~~~~~g~C~~~~~~~~~~~yr~P~nv~--~~~~~~~~~~~~~sse~y~S~~~~~~~ 243 (913)
T 3t5o_A 166 IPSVQLMGNGFHFLAGEPRGEVLDNSFTGGICKTVKSSRTSNPYRVPANLE--NVGFEVQTAEDDLKTDFYKDLTSLGHN 243 (913)
T ss_dssp CTTGGGGGEEEETTTTEEEEECBCSSCCCSCCCEECCTTSSSCEECCTTEE--EEECCCCCCGGGEEEEEESCGGGGGC-
T ss_pred cchhhhhcCcEEeecCccccccccccccCCeeeEEECCCCCceEeccccee--eEEEEEEEEecceeHhhhhhHHHHHHh
Confidence 579999999999994 343 88888888999988774334599999954 5688899999 6 99999999999998
Q ss_pred HH--HHhccccccccccCCcceeEEEEEccccccccc------c--ccceEEEEeEEEEEEEEEEcCCCCCCCHHHHhh-
Q 006910 111 MS--EFFNQNSAIPGKIPSGLFNNMFNFHSGSWAKDA------G--NTKYLGLDGYYIILFNVHIDRYPLVLSDEVRNA- 179 (626)
Q Consensus 111 ms--s~fn~~~slggkIpsG~fna~f~~~sGS~skda------s--~tKsfa~~~~~i~ly~~~L~~~~L~Ls~eF~~a- 179 (626)
++ ..++.+|+++++|+ +.|++++++ ++++++.+ + .+..|+++...|++|+|+|+.++++|+++|+++
T Consensus 244 ~~~~~s~s~~~~~~~~i~-~~~s~~~~~-~~s~s~~~~~~~~~s~~~~~~f~~~~~~~~~~~~~l~~~~l~L~~~F~~~l 321 (913)
T 3t5o_A 244 ENQQGSFSSQGGSSFSVP-IFYSSKRSE-NINHNSAFKQAIQASHKKDSSFIRIHKVMKVLNFTTKAKDLHLSDVFLKAL 321 (913)
T ss_dssp ----------------CC-CCCCTTTCC-CCCCTTHHHHHHHHHHTSSEEEEEEEEEEEEEEEEECSSSCCBCHHHHHHT
T ss_pred hhhcceeecccceeeccc-cceeeeeEe-eccchHHHHHHHHhhhccceEEEEEEEEEEEEEEEecCCCCCcCHHHHHHH
Confidence 87 56778888888887 446666666 66655443 1 133499999999999999999899999999999
Q ss_pred --CCCCCCHHHHHHHHHccceEEEEeeEEcce-EEEE-Ee--eeccCCCCHHHHHhhHhhccceEEeeeeccCC-cc-cc
Q 006910 180 --VPSSWDPFALARFIEKYGTHIIVGLSIGGQ-DVVL-VN--QDNSSNLGPSELKKHLDDLGDQLFTGTCNFTP-NI-KE 251 (626)
Q Consensus 180 --LP~~ydp~~Y~~FIe~YGTHyItsvtLGGk-dv~~-vk--q~~sS~ls~sEvk~cL~~~a~~~f~~~~~sss-~~-~~ 251 (626)
||..|++++|++||++||||||++++|||+ ++++ ++ +++.++++.+|+++||+.+++++|...+.... +. ++
T Consensus 322 ~~LP~~y~~~~Y~~fi~~yGTHyits~~lGG~~~~i~~~~~~~~~~~~~t~~ev~~cl~~~~~~~~~~~~~~~~~~~c~~ 401 (913)
T 3t5o_A 322 NHLPLEYNSALYSRIFDDFGTHYFTSGSLGGVYDLLYQFSSEELKNSGLTEEEAKHCVRIETKKRVLFAKKTKVEHRCTT 401 (913)
T ss_dssp TSSCSSCCHHHHHHHHHHHCSEECSEEEEEEEEEEEEEEEHHHHHHHTCCHHHHHHHHHHHHHHHTSCCCCCCCCGGGTS
T ss_pred HhCccccCHHHHHHHHHhcCcEEEEeEEeccEEEEEEEEchhhHhhcCCCHHHHHHhhheecceEEEEEeeccccCcccC
Confidence 799999999999999999999999999999 6665 45 44567999999999999988887754333221 11 11
Q ss_pred c--CCCCCCCccccCCCCCcccccccccccCCeeEEeeecCCCC---------------ChhcHHHHHhcCCCCCceeee
Q 006910 252 Q--KNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGDP---------------SAYSHCEWLLTVPSNPDAVHF 314 (626)
Q Consensus 252 ~--k~~~~~sf~~~~~~~~~er~~sev~~~edl~vI~~~rGG~~---------------~~~~~s~Wl~SV~~nPdvI~~ 314 (626)
. +.+...+|.+ ..++.. ..++||.. +.++|++|++||+++|++|+|
T Consensus 402 ~~~~~~~~~s~~~---------------~~~~~~--~~v~GG~~~~~~~L~~~~~~~~~~~~~~~~W~~Sv~~~P~~I~~ 464 (913)
T 3t5o_A 402 NKLSEKHEGSFIQ---------------GAEKSI--SLIRGGRSEYGAALAWEKGSSGLEEKTFSEWLESVKENPAVIDF 464 (913)
T ss_dssp STTGGGGTTCSGG---------------GSSEEE--ECCBSSCHHHHHHHSCCTTSSSSSHHHHHHHHHHHHHSCEEEEE
T ss_pred CCccccccccccc---------------ccccce--EEEeCCCcchhhhhhhhccCCCCCHHHHHHHHHHHhhCCceeee
Confidence 0 1111122211 223333 44788863 457899999999999999999
Q ss_pred ecccccccccCC----hhhhHHHHHHHHHHHhCCCccchhhhhhhccccccccccCC-CCCCCCCCCCCCCCc
Q 006910 315 NFIPITSLLKGV----PGKGFLSHAINLYLRYKPPITDLQYFLEFQAHKVWAPIHND-LPLGPTTNMTNPSPA 382 (626)
Q Consensus 315 kL~PI~eLl~~~----pkk~nLk~AI~~YL~~Kp~ieeL~~fleFq~P~~wAP~~~~-lpl~~~~r~~~~~p~ 382 (626)
+|.|||+||++. +||+||++||++||.+ | .||+|+||+|+ -|...+..+.|+|+.
T Consensus 465 ~l~PI~eLv~~~~~~~~kr~~Lk~Ai~~Yl~e------------~-~~c~C~PC~ngg~~~l~g~~C~C~C~~ 524 (913)
T 3t5o_A 465 ELAPIVDLVRNIPCAVTKRNNLRKALQEYAAK------------F-DPCQCAPCPNNGRPTLSGTECLCVCQS 524 (913)
T ss_dssp ECCBGGGGCCSSTTHHHHHHHHHHHHHHHHHT------------T-CGGGSCCBTTTBEEEEETTEEEEECCT
T ss_pred eeccHHHHhhccCchHHHHHHHHHHHHhhccc------------c-ccccCCCCCCCCEeecCCCceEEEccC
Confidence 999999999986 6999999999999996 5 99999999998 565455788888877
No 5
>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A
Probab=100.00 E-value=4.5e-42 Score=366.92 Aligned_cols=286 Identities=14% Similarity=0.182 Sum_probs=212.2
Q ss_pred HHHhhhcceeeeeccC-ccc---cccCCCCCceEEecCCC-c--------------c--eeeEecCCeeeeeeccceeee
Q 006910 36 VERAISSLGKGFDLTS-DFR---LKYCKGKERLVVLNDAD-H--------------E--REITVPGFGSVNEVSIDIKCD 94 (626)
Q Consensus 36 a~~ai~~LG~GyDIt~-D~r---l~~ck~gsr~i~id~~~-~--------------~--r~~~iP~gv~v~~v~~~~kC~ 94 (626)
..||++.+|.||||+. +.+ +|+-++||.|..+..++ + . ..|++|+|+ ..|+++.+|+
T Consensus 20 ~iPg~~~~g~G~dilt~~~~g~v~D~~~~~g~C~~~~~~~~~~~~~d~~~~~~~~~~~~~~yr~P~nv--~~~~~~~~~~ 97 (367)
T 2rd7_A 20 PIPGSQKAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERLYYGDDEKYFRKPYNF--LKYHFEALAD 97 (367)
T ss_dssp BCTTHHHHTEEEETTTTEEEEESBCTTCCTTCCCEEEECSSCCEEEETTTTEEEECSCCEEEECCTTE--EEEEECCCCC
T ss_pred CCCChHHHCCceeeecCCccCccccCCccCCEEEEEecCccccccccccccchhhcccccceecChhh--eeeeEEEEEe
Confidence 3789999999999994 333 77777777887774331 0 0 229999995 4578999999
Q ss_pred cC-CceEEeehhHhHHHHHHHhccccccccccCCcceeEEEEEccccccccc----------cccceEEEEeEEEEEEEE
Q 006910 95 KG-DRTRYQSDILNFNQMSEFFNQNSAIPGKIPSGLFNNMFNFHSGSWAKDA----------GNTKYLGLDGYYIILFNV 163 (626)
Q Consensus 95 k~-~s~~y~S~v~~~~qmss~fn~~~slggkIpsG~fna~f~~~sGS~skda----------s~tKsfa~~~~~i~ly~~ 163 (626)
.. +++.|+|...+.+++++..+.+|++++++..+...+.+++ +|++++.+ ..+.+|++....|++|+|
T Consensus 98 ~~~s~~~y~S~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~s~S~~~~f~~~~~~~~~~~~~f~~~~~~~~~~~~ 176 (367)
T 2rd7_A 98 TGISSEFYDNANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGV-GVSHSQDTSFLNELNKYNEKKFIFTRIFTKVQTAHF 176 (367)
T ss_dssp CCCEEEEESSHHHHHHHHHHHTTSSEEEEECCC---CEEEEEE-SCCSSCCHHHHHHHHTTCSTTEEEEEEEEEEEEEEE
T ss_pred eecchhheecHHHHHHHHHhhhccccccccccccccceEEEEe-eecccchHHHHHHHHHhhcCCcEEEEEEEEEEEEEE
Confidence 99 9999999999999999999888887776542233444555 55555322 122349999999999999
Q ss_pred EEcCCCCCCCHHHHhh---CCCCCCHHHHHHHHHccceEEEEeeEEcce-EEEE-Eee--eccCCCCHHHHHhhHhhccc
Q 006910 164 HIDRYPLVLSDEVRNA---VPSSWDPFALARFIEKYGTHIIVGLSIGGQ-DVVL-VNQ--DNSSNLGPSELKKHLDDLGD 236 (626)
Q Consensus 164 ~L~~~~L~Ls~eF~~a---LP~~ydp~~Y~~FIe~YGTHyItsvtLGGk-dv~~-vkq--~~sS~ls~sEvk~cL~~~a~ 236 (626)
+|.++.++|+++|+++ ||..|++++|++||++||||||++++|||+ ++++ +++ +++++++.+|+++|++.+++
T Consensus 177 ~l~~~~~~L~~~F~~~l~~LP~~y~~~~y~~fI~~yGTHyits~~lGG~~~~i~~~~~~~~~~s~~t~~e~~~cl~~~a~ 256 (367)
T 2rd7_A 177 KMRKDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGITSRDITTCFGGSLG 256 (367)
T ss_dssp EECSSSBCBCHHHHHHHHTSCSSCCHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHHHHHTCCHHHHHHHHHHHTT
T ss_pred EEECCCCCCCHHHHHHHHhCcccCCHHHHHHHHHHcCcEEEeccccCcEEEEEEEEehHhHhhCCCCHHHHHHHHHhhcC
Confidence 9998889999999999 799999999999999999999999999999 7666 443 45779999999999999988
Q ss_pred eEEee---eeccCC-c-cccc--CCCCCCCccccCCCCCcccccccccccCCeeEEeeecCCCCC----------hhcHH
Q 006910 237 QLFTG---TCNFTP-N-IKEQ--KNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGDPS----------AYSHC 299 (626)
Q Consensus 237 ~~f~~---~~~sss-~-~~~~--k~~~~~sf~~~~~~~~~er~~sev~~~edl~vI~~~rGG~~~----------~~~~s 299 (626)
++|.+ .+.+.. + ..+. +.+...+|++ ..++.. ..++||++. +++|+
T Consensus 257 ~~~~~~v~~~~~~~~~~c~~~~~~~~~~~~~~~---------------~~~~~~--~~v~GG~~~~~~~L~~~~~~~~~~ 319 (367)
T 2rd7_A 257 IQYEDKINVGGGLSGDHCKKFGGGKTERARKAM---------------AVEDII--SRVRGGSSGWSGGLAQNRSTITYR 319 (367)
T ss_dssp CCC------------CHHHHHTTCCSHHHHHHT---------------TEEEEE--ECCBSCCC-----------CCCHH
T ss_pred eeeeccceeecccCccccccccccccccccccc---------------cccceE--EEEECCCccccchhccCCChHHHH
Confidence 77721 111110 0 1110 0000011111 112332 458899643 36899
Q ss_pred HHHhcCCCCCceeeeeccccccccc--CCh----hhhHHHHHHHHHHH
Q 006910 300 EWLLTVPSNPDAVHFNFIPITSLLK--GVP----GKGFLSHAINLYLR 341 (626)
Q Consensus 300 ~Wl~SV~~nPdvI~~kL~PI~eLl~--~~p----kk~nLk~AI~~YL~ 341 (626)
+|++||+++|++|+|+|.||++||+ +.| ||+||++||++||+
T Consensus 320 ~W~~Sv~~~P~~I~~~l~PI~~Ll~~~~~p~~~~kk~~Lk~Ai~~Yl~ 367 (367)
T 2rd7_A 320 SWGRSLKYNPVVIDFEMQPIHEVLRHTSLGPLEAKRQNLRRALDQYLM 367 (367)
T ss_dssp HHHHHHHHCCEEEEEEEEEGGGGGGGBTTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcCCceEEEEEEEHHHhcCcccCCccHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999 555 49999999999983
No 6
>2qp2_A Unknown protein; toxin, unknown function; 2.00A {Photorhabdus luminescens subsp}
Probab=100.00 E-value=1.5e-36 Score=336.09 Aligned_cols=325 Identities=18% Similarity=0.215 Sum_probs=210.2
Q ss_pred HHHHHhhhcceeeeeccCcc-ccccCCC-----------CCceEEecCCCcceeeEecCCeeeeeeccceeeecC-CceE
Q 006910 34 VVVERAISSLGKGFDLTSDF-RLKYCKG-----------KERLVVLNDADHEREITVPGFGSVNEVSIDIKCDKG-DRTR 100 (626)
Q Consensus 34 ~~a~~ai~~LG~GyDIt~D~-rl~~ck~-----------gsr~i~id~~~~~r~~~iP~gv~v~~v~~~~kC~k~-~s~~ 100 (626)
..+.+|+++||+||||++++ ++.+|+. ++.|..+..+ . ..|++|+++.+. ...+.. +++.
T Consensus 36 ~~~~~g~~~lG~GyDI~g~y~~~~~~k~~V~D~~~~~~~~~~~~~v~i~-~-~~yrvP~ni~~~-----~~~~~~f~s~~ 108 (511)
T 2qp2_A 36 DTVIAGAEMIGTSYDVFGKYCNVGSCMNSLFDERKINASEDNFKKVTIL-G-KTLKVPYYIDCY-----SVGDLKYTNAS 108 (511)
T ss_dssp TTBCTTGGGTTEEECTTSSSSCGGGEEEECBCHHHHHTCGGGEEEEEET-T-EEEEEETTCEEE-----EEEEEEEEEEE
T ss_pred ccchhhhHhheeeeeecccccCccccCcceeechheecccCCCceEeeC-C-eeecCCcceEee-----eccceEEEEEE
Confidence 35578999999999999875 3444441 2244443333 3 348999997643 223333 4566
Q ss_pred EeehhHhHHHHHHHhcccccccc--ccCCcceeEEEEEccccccccccccceEEEEeEEEEEEEEEEcCCC--CCCCHHH
Q 006910 101 YQSDILNFNQMSEFFNQNSAIPG--KIPSGLFNNMFNFHSGSWAKDAGNTKYLGLDGYYIILFNVHIDRYP--LVLSDEV 176 (626)
Q Consensus 101 y~S~v~~~~qmss~fn~~~slgg--kIpsG~fna~f~~~sGS~skdas~tKsfa~~~~~i~ly~~~L~~~~--L~Ls~eF 176 (626)
|+|...+.+++ +++.++++ ++.+|.|+++|+. + +......+|.+.+..|++|+++++.+. +.|+++|
T Consensus 109 yeS~~ey~~~l----~~~~svsgs~~~fsgs~~a~F~~-s----~~~~k~~~f~~v~~~i~~y~~~~~~~~l~~~Ls~~F 179 (511)
T 2qp2_A 109 GESIESYQSNI----SSKSRIKGNYLFFSASLKVDFDT-D----SLTDFENAFSRIQYTYDLYILKSSAEALKEFLKESV 179 (511)
T ss_dssp ESSHHHHHHHH----HHTTCCSSSCCTTTTHHHHHSCT-G----GGGCTTEEEEEEEEEEEEEEEECCHHHHGGGBCHHH
T ss_pred ecCHHHHHHHH----HHhheeeeceeeeeEEEEEEecc-c----cccccceEEEEEEEEEEEEEEEeChhhhhhhcCHHH
Confidence 66665555554 44444554 5667777777755 2 222233458999999999999998764 3799999
Q ss_pred HhhCCCCCCHHHHHHHHHccceEEEEeeEEcce-EEEEE-eeeccCCCCHHHHHhhHhhccceEEeee-eccCCcccccC
Q 006910 177 RNAVPSSWDPFALARFIEKYGTHIIVGLSIGGQ-DVVLV-NQDNSSNLGPSELKKHLDDLGDQLFTGT-CNFTPNIKEQK 253 (626)
Q Consensus 177 ~~aLP~~ydp~~Y~~FIe~YGTHyItsvtLGGk-dv~~v-kq~~sS~ls~sEvk~cL~~~a~~~f~~~-~~sss~~~~~k 253 (626)
+++|+..+++.+|++||++||||||++++|||+ ++++. ++....+ .. |++.++++.|... ..+.. . +
T Consensus 180 ~k~L~~~~~~~~y~~fI~~YGTHyits~~lGG~~~y~~s~~~~~~~~--~~----~is~~a~as~~~~~~~s~~-~---~ 249 (511)
T 2qp2_A 180 KTALDKADTEEDMNDLFNTWGSHFLSGVVMGGCAQYSSSTNKYTSNL--TN----SFDVVAAASFAGFIGLSAR-T---G 249 (511)
T ss_dssp HHHHHHCCSHHHHHHHHHHTCSEEECEEEEEEEEEEEEEEETTTSCC--SS----CHHHHHHHHHHHHTTCCCC-C---T
T ss_pred HHhhccccchhhHHHHHHhCCeEEEEeeecccEEEEEEeeccccccc--cc----eeeeEEEEEEeeeeeeccc-c---c
Confidence 999988889999999999999999999999999 44433 3322222 22 4444433333111 01110 0 0
Q ss_pred CCCCCCccccCCCCCcccccccccccCCeeEEeeecCCC-----C--------C---------hhcHHHHHhcCCCCCce
Q 006910 254 NKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGD-----P--------S---------AYSHCEWLLTVPSNPDA 311 (626)
Q Consensus 254 ~~~~~sf~~~~~~~~~er~~sev~~~edl~vI~~~rGG~-----~--------~---------~~~~s~Wl~SV~~nPdv 311 (626)
.++.. ... .+ ...+++. ..++||+ . + +.+|++|++||+++|++
T Consensus 250 ----~~~~~----~~~-sf----~s~~~~~--~~V~GG~~s~~d~~~~aL~~~~ps~~~~~~~~~~y~~W~~SV~~nP~v 314 (511)
T 2qp2_A 250 ----NSFME----DIK-KF----RSASNIK--THAIGGDLSRFDPFGGATSADQPSAEEIAAAKKAFEDWKASVPNAPEL 314 (511)
T ss_dssp ----TTHHH----HHH-HH----HHTEEEE--EEEESSCTTTCCTTTTCCCCSSCCHHHHHHHHHHHHHHHHHSTTSCEE
T ss_pred ----ccccc----ccc-cc----cccCceE--EEEECCCCcccccccceeccCCCcccccccchhHHHHHHHHhhhchhe
Confidence 00110 000 00 0112332 3478886 2 1 14799999999999999
Q ss_pred eeee----cccccccccCChhhhHHHHHHHHHHHhCCCccchhhhhhhccccccccccCCCCC---CCCCCCCCCCCcee
Q 006910 312 VHFN----FIPITSLLKGVPGKGFLSHAINLYLRYKPPITDLQYFLEFQAHKVWAPIHNDLPL---GPTTNMTNPSPALH 384 (626)
Q Consensus 312 I~~k----L~PI~eLl~~~pkk~nLk~AI~~YL~~Kp~ieeL~~fleFq~P~~wAP~~~~lpl---~~~~r~~~~~p~l~ 384 (626)
|+|+ |.|||+||+..++|++|++||++||.+ ..|+|+||++| |+ ..+.+|.|.||.
T Consensus 315 Idf~~~~sL~PI~eLV~~~~Kk~~LkrAieeYl~e--------------~~~~~~~~~~n-~~~~~~~g~~c~c~cp~-- 377 (511)
T 2qp2_A 315 VNFADSNPLTGIWELCSDRTQKAKLKKHFETVWAP--------------AESAKRRVHAD-YIDEIIIGINNTNTPPE-- 377 (511)
T ss_dssp EEECSSCCEEEGGGGCSCHHHHHHHHHHHHHTHHH--------------HHHHTTCCCCC-EEEEEEEEECTTCCCCT--
T ss_pred EeecCCccceeHHHhccCHHHHHHHHHHHHHHHhh--------------cCcccccccCc-ceeEEecCCccCccCCC--
Confidence 9996 999999999999999999999999985 46679999998 54 345799999998
Q ss_pred EEeeccee--------------eeeeccccc---CCCceeeEEEEeeccC
Q 006910 385 FHLMGPKL--------------YVNTMQVTT---EKIPVTGVRLYLEGRK 417 (626)
Q Consensus 385 fs~~gpkl--------------~v~~~~v~~---~~~pvtg~rl~leg~k 417 (626)
-|-|++. ++=..+-|. +++|||=|++-.++.+
T Consensus 378 -g~~g~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 426 (511)
T 2qp2_A 378 -GYIGLKSTKDENLNSKGNICLFMHKAKYDPNIDNKDCITELKFITVRDK 426 (511)
T ss_dssp -TCEECBSSSBCCSBTGGGEEEEEEEECCCTTSCCCCEEEEEEEECSTTC
T ss_pred -CccccccccccccCCCcEEEEEEEecccCccccCCCcceEEEEecCCCC
Confidence 2445543 222222232 4677777765555544
No 7
>3kk7_A Putative cell invasion protein with MAC/perforin; STR genomics, joint center for structural genomics, JCSG; 2.46A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.49 E-value=3e-15 Score=162.21 Aligned_cols=184 Identities=13% Similarity=0.170 Sum_probs=111.9
Q ss_pred ceEEEEeEEEEEEEEEEcCCCC--------CCCHHHHhhCCCCCCHHHHHHHHHccceEEEEeeEEcce-EEEEEeeecc
Q 006910 149 KYLGLDGYYIILFNVHIDRYPL--------VLSDEVRNAVPSSWDPFALARFIEKYGTHIIVGLSIGGQ-DVVLVNQDNS 219 (626)
Q Consensus 149 Ksfa~~~~~i~ly~~~L~~~~L--------~Ls~eF~~aLP~~ydp~~Y~~FIe~YGTHyItsvtLGGk-dv~~vkq~~s 219 (626)
-.|+.....+...++.|....- -|++.|+++|=. +.+ .+||+.||||+++...+||| .+.|.- ...
T Consensus 157 ysygel~v~~~~rr~~L~~s~~~L~~i~s~YLt~~Fi~dL~n-~s~---~eIVq~YGTHVLTDI~~GGr~~alY~g-~~~ 231 (541)
T 3kk7_A 157 VVHGELSIEVVNGMLNLQTAPSALRKIAADYLDELFVDALYN-SSM---VELMQSYGEFVLTGYYTGGRASALFYG-VDT 231 (541)
T ss_dssp EEEEEEEEEEEEEEEEECCCHHHHHHHHHHCBCHHHHHHHHH-SCH---HHHHHHHCSEEECEEEEEEEEEEEEEE-EES
T ss_pred eeEEEEEEeeeccEEEecCChhHHHHHHHhhchHHHHHHHhh-CCH---HHHHHhhCCeEEEEEEeccEEEEEEEE-eec
Confidence 3499999999999999997533 267999999643 344 89999999999999999999 555543 323
Q ss_pred CCCCHHHHHhhHhhcc--ceEEeeeeccCCcccccCCCCCCCccccCCCCCcccccccccccCCeeEEeeecCCCC----
Q 006910 220 SNLGPSELKKHLDDLG--DQLFTGTCNFTPNIKEQKNKPPQAFKVFDPTPAAVNSFSSTSSKDGISVICSRRGGDP---- 293 (626)
Q Consensus 220 S~ls~sEvk~cL~~~a--~~~f~~~~~sss~~~~~k~~~~~sf~~~~~~~~~er~~sev~~~edl~vI~~~rGG~~---- 293 (626)
+..+.++-++-++..+ +..+...+.... .....+.+..|+- .- .+....+.+....++.+.....||..
T Consensus 232 ~~~~~~~Kek~md~~I~As~~~~~~~~~~~--~~~i~~~S~n~s~-~~--~~g~~~Sl~kkn~~~~~~ikT~GG~~g~~i 306 (541)
T 3kk7_A 232 NSIQFDSKEKDMDVAINASYEWKNKKPTAP--SDTIHSASGNLSI-GT--KRENSETITNKFSALSYSIKTLGGAYGYSI 306 (541)
T ss_dssp SCCSHHHHHHHHHHHHHHSEEEESCCCC------------CEEEE-SC--CHHHHHHHHTTEEEEEEEEEEESSSSSCSS
T ss_pred cccchHHhhhhhhheeeeeeeecccccccc--cccceeeeeeccc-Cc--ccccccccccccceEEEEEEeeCCCccccc
Confidence 3334444444333333 333321111000 0000001111110 00 00000011111123443345668841
Q ss_pred --------C-hhcHHHHHhcCCC--CCceeee---ecccccccccCChhhhHHHHHHHHHHHh
Q 006910 294 --------S-AYSHCEWLLTVPS--NPDAVHF---NFIPITSLLKGVPGKGFLSHAINLYLRY 342 (626)
Q Consensus 294 --------~-~~~~s~Wl~SV~~--nPdvI~~---kL~PI~eLl~~~pkk~nLk~AI~~YL~~ 342 (626)
+ .-++..|.+||.+ +..+|++ .|.||+|||.+..+|+.|+.|+++||..
T Consensus 307 ~~~~~~~~~~sIDls~W~~Sl~Ds~n~~LIDI~~~gLyPIyDfI~e~n~Kqri~~t~~~~l~~ 369 (541)
T 3kk7_A 307 STPPYDITNYSIDLTPWLQSLNDPKTHTMIDLQDGGLYPISDFILEENFKQRYNDTHMDFQYQ 369 (541)
T ss_dssp CCCCEETTTCCEECHHHHHHTTSGGGCEEEEECTTCEEEGGGGCCCHHHHHHHHHHHTTSCCC
T ss_pred cccCCCCCCcceehHHhhhhhcccccceEEEcCCCCeeehHHhhhchhHHHHHHHHHhhcccc
Confidence 2 2489999999999 6889998 6999999999999999999999988865
No 8
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=26.69 E-value=19 Score=23.44 Aligned_cols=18 Identities=28% Similarity=0.778 Sum_probs=15.5
Q ss_pred eeeecceecCCCccCCCC
Q 006910 469 HICTAPVKYDPKWATRKD 486 (626)
Q Consensus 469 ~v~tapv~~~~~~~~~~~ 486 (626)
|-|.-|-+|||+++.+++
T Consensus 3 hsciypgqynpsfisdds 20 (26)
T 3u7d_B 3 HSCIFPGQYNPSFISDES 20 (26)
T ss_pred ccccccCccCcccccCcc
Confidence 889999999999986553
No 9
>2i46_A Adrenocortical dysplasia protein homolog; TPP1, OB fold, POT1 binding, protein binding; 2.70A {Homo sapiens}
Probab=25.94 E-value=37 Score=31.26 Aligned_cols=39 Identities=28% Similarity=0.536 Sum_probs=32.7
Q ss_pred cccccccccccccc-ccCCC---CCCcceEEeeeeeeecCceEEEEE
Q 006910 575 RTQKLLKFVDTSQL-CRGPQ---DSPGHWLVTGAKLDLEKGKICLRV 617 (626)
Q Consensus 575 ~~~kl~~~vd~~e~-~~gp~---d~pg~w~vtgakl~~~~gki~l~v 617 (626)
++..|++||-++|. .-||- |+|| .||-|.|.+|+-++|-
T Consensus 24 ~~gQllevlq~ae~~~~gps~apdt~~----v~A~llvSDgthsvrc 66 (161)
T 2i46_A 24 RAGQLLEVLQDAEAAVAGPSHAPDTSD----VGATLLVSDGTHSVRC 66 (161)
T ss_dssp EEEEEEEEEECCCCCCCSCCSSCCCTT----SCEEEEEECSSCEEEE
T ss_pred chHHHHHHHHHhccccCCCCCCCCCCC----ceeEEEEcCCceEEEE
Confidence 45669999999998 47887 8888 6899999999988773
No 10
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=17.55 E-value=75 Score=26.34 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=22.7
Q ss_pred HHhhCCCCCCHHHHHHHHHccceEEEEeeEE
Q 006910 176 VRNAVPSSWDPFALARFIEKYGTHIIVGLSI 206 (626)
Q Consensus 176 F~~aLP~~ydp~~Y~~FIe~YGTHyItsvtL 206 (626)
|...||...+..++.+++..||+ |.++.+
T Consensus 23 fV~nLp~~~te~~L~~~F~~~G~--I~~v~i 51 (99)
T 4fxv_A 23 IVNYLPQNMTQDELRSLFSSIGE--VESAKL 51 (99)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSC--EEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCC--EEEeEe
Confidence 44559999999999999999997 444443
Done!