Query 006910
Match_columns 626
No_of_seqs 235 out of 524
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 12:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006910.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006910hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wi6a1 d.58.7.1 (A:69-143) Ri 37.7 17 0.0012 27.1 4.3 56 177-239 3-58 (75)
2 d1fxla1 d.58.7.1 (A:37-118) Hu 31.0 14 0.001 27.6 2.8 57 176-239 6-69 (82)
3 d1fxla2 d.58.7.1 (A:119-203) H 30.7 14 0.001 28.1 2.8 51 176-233 10-67 (85)
4 d1b7fa2 d.58.7.1 (A:205-289) S 26.1 17 0.0013 27.4 2.6 29 176-206 10-38 (85)
5 d2cpfa1 d.58.7.1 (A:362-446) P 23.1 23 0.0017 26.5 2.8 22 177-198 3-24 (85)
6 d1rk8a_ d.58.7.1 (A:) RNA-bind 22.3 25 0.0018 26.8 2.8 29 176-206 11-39 (88)
7 d1b7fa1 d.58.7.1 (A:123-204) S 22.1 33 0.0024 25.3 3.5 57 176-239 6-69 (82)
8 d1xksa_ b.69.14.1 (A:) Nuclear 21.0 9.8 0.00072 38.2 0.1 41 568-608 10-51 (403)
9 d2cpha1 d.58.7.1 (A:454-547) P 17.9 31 0.0022 26.6 2.5 29 176-206 12-40 (94)
10 d1e0ta1 b.58.1.1 (A:70-167) Py 17.8 25 0.0018 27.6 1.9 18 602-619 50-67 (98)
No 1
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.69 E-value=17 Score=27.12 Aligned_cols=56 Identities=7% Similarity=0.108 Sum_probs=36.4
Q ss_pred HhhCCCCCCHHHHHHHHHccceEEEEeeEEcceEEEEEeeeccCCCCHHHHHhhHhhccceEE
Q 006910 177 RNAVPSSWDPFALARFIEKYGTHIIVGLSIGGQDVVLVNQDNSSNLGPSELKKHLDDLGDQLF 239 (626)
Q Consensus 177 ~~aLP~~ydp~~Y~~FIe~YGTHyItsvtLGGkdv~~vkq~~sS~ls~sEvk~cL~~~a~~~f 239 (626)
...||..++..++.++++.||...+....-.|-..+.+. +.++.+++++..-+..+
T Consensus 3 V~nLp~~~t~~~l~~~F~~~g~~~~~~~~~~g~afv~f~-------~~~~A~~Ai~~ln~~~~ 58 (75)
T d1wi6a1 3 IRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLL-------NGEQAEAAINTFHQSRL 58 (75)
T ss_dssp EECCCTTCCHHHHHHHTTTSCEEEEEEETTTTEEEEEES-------SHHHHHHHHHHHTTEES
T ss_pred EeCCCCcCCHHHHHHHHhcccccceeecccceeEEEEEC-------CHHHHHHHHHHhCCccC
Confidence 345899999999999999999666555444444332222 35666677665444444
No 2
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.99 E-value=14 Score=27.61 Aligned_cols=57 Identities=18% Similarity=0.263 Sum_probs=35.5
Q ss_pred HHhhCCCCCCHHHHHHHHHccceEEEEeeEE-----cce-E-EEEEeeeccCCCCHHHHHhhHhhccceEE
Q 006910 176 VRNAVPSSWDPFALARFIEKYGTHIIVGLSI-----GGQ-D-VVLVNQDNSSNLGPSELKKHLDDLGDQLF 239 (626)
Q Consensus 176 F~~aLP~~ydp~~Y~~FIe~YGTHyItsvtL-----GGk-d-v~~vkq~~sS~ls~sEvk~cL~~~a~~~f 239 (626)
|...||..++..++.++++.||.- .++.+ .|+ . +-+|. . .+.++.++|++..-+..+
T Consensus 6 ~V~nLp~~~te~~l~~~f~~~G~v--~~v~i~~~~~~~~~~g~afv~-f----~~~~~a~~a~~~l~g~~~ 69 (82)
T d1fxla1 6 IVNYLPQNMTQEEFRSLFGSIGEI--ESCKLVRDKITGQSLGYGFVN-Y----IDPKDAEKAINTLNGLRL 69 (82)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCE--EEEEEEECTTTCCEEEEEEEE-E----SSHHHHHHHHHHHTTCEE
T ss_pred EEECCCCCCCHHHHHHHHHHhCCc--ccccceeeccCCCceeeEEEE-E----CCHHHHHHHHHHhCCCEE
Confidence 345599999999999999999973 33333 233 1 22222 1 246777777765444344
No 3
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.72 E-value=14 Score=28.15 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=32.7
Q ss_pred HHhhCCCCCCHHHHHHHHHccceEEEEeeEE-----cce--EEEEEeeeccCCCCHHHHHhhHhh
Q 006910 176 VRNAVPSSWDPFALARFIEKYGTHIIVGLSI-----GGQ--DVVLVNQDNSSNLGPSELKKHLDD 233 (626)
Q Consensus 176 F~~aLP~~ydp~~Y~~FIe~YGTHyItsvtL-----GGk--dv~~vkq~~sS~ls~sEvk~cL~~ 233 (626)
|...||..++..++.++++.||+ |.++.+ .|+ -+-+|. . .+.++.+++++.
T Consensus 10 fV~nLp~~~te~~L~~~F~~~G~--v~~v~i~~d~~~g~~kg~afV~-f----~~~~~a~~Ai~~ 67 (85)
T d1fxla2 10 YVSGLPKTMTQKELEQLFSQYGR--IITSRILVDQVTGVSRGVGFIR-F----DKRIEAEEAIKG 67 (85)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECTTTCCEEEEEEEE-E----SSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHhCC--ccccccccccccccCCCeeEEE-E----cCHHHHHHHHHH
Confidence 34459999999999999999998 444443 343 233332 1 145666667654
No 4
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=26.06 E-value=17 Score=27.44 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=23.3
Q ss_pred HHhhCCCCCCHHHHHHHHHccceEEEEeeEE
Q 006910 176 VRNAVPSSWDPFALARFIEKYGTHIIVGLSI 206 (626)
Q Consensus 176 F~~aLP~~ydp~~Y~~FIe~YGTHyItsvtL 206 (626)
|...||..++..++.++++.||+ |.++.+
T Consensus 10 fV~nlp~~~te~~l~~~F~~~G~--i~~~~~ 38 (85)
T d1b7fa2 10 YVTNLPRTITDDQLDTIFGKYGS--IVQKNI 38 (85)
T ss_dssp EEESCCTTCCHHHHHHHHTSSSC--EEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhhCC--Eeeeee
Confidence 44559999999999999999997 455443
No 5
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.11 E-value=23 Score=26.54 Aligned_cols=22 Identities=18% Similarity=0.068 Sum_probs=19.6
Q ss_pred HhhCCCCCCHHHHHHHHHccce
Q 006910 177 RNAVPSSWDPFALARFIEKYGT 198 (626)
Q Consensus 177 ~~aLP~~ydp~~Y~~FIe~YGT 198 (626)
...||...+..++.++++.||+
T Consensus 3 V~nLp~~~t~~~l~~~F~~~G~ 24 (85)
T d2cpfa1 3 IKNLNFSTTEETLKGVFSKVGA 24 (85)
T ss_dssp EESCCTTCCHHHHHHHHHTTSC
T ss_pred EcCCCCCCCHHHHHHHHHHhCC
Confidence 3458999999999999999997
No 6
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=22.29 E-value=25 Score=26.81 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=22.7
Q ss_pred HHhhCCCCCCHHHHHHHHHccceEEEEeeEE
Q 006910 176 VRNAVPSSWDPFALARFIEKYGTHIIVGLSI 206 (626)
Q Consensus 176 F~~aLP~~ydp~~Y~~FIe~YGTHyItsvtL 206 (626)
|...||..++..++.+++..||+ |.++.+
T Consensus 11 ~V~nL~~~~t~~~l~~~F~~~G~--i~~v~i 39 (88)
T d1rk8a_ 11 FVTSIHEEAQEDEIQEKFCDYGE--IKNIHL 39 (88)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSC--EEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHcCC--cccccc
Confidence 44559999999999999999997 444443
No 7
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=22.07 E-value=33 Score=25.35 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=36.1
Q ss_pred HHhhCCCCCCHHHHHHHHHccceEEEEeeEE-----cce--EEEEEeeeccCCCCHHHHHhhHhhccceEE
Q 006910 176 VRNAVPSSWDPFALARFIEKYGTHIIVGLSI-----GGQ--DVVLVNQDNSSNLGPSELKKHLDDLGDQLF 239 (626)
Q Consensus 176 F~~aLP~~ydp~~Y~~FIe~YGTHyItsvtL-----GGk--dv~~vkq~~sS~ls~sEvk~cL~~~a~~~f 239 (626)
|..-||..++..++.++++.||. |.++.+ .|+ -+-+|+- .+.++.++|++..=+..+
T Consensus 6 ~V~nLp~~~t~~~l~~~F~~~G~--v~~~~i~~~~~~g~~~g~afV~f-----~~~~~A~~ai~~lng~~~ 69 (82)
T d1b7fa1 6 IVNYLPQDMTDRELYALFRAIGP--INTCRIMRDYKTGYSYGYAFVDF-----TSEMDSQRAIKVLNGITV 69 (82)
T ss_dssp EEECCCTTCCHHHHHHHHHTTSC--EEEEECCEETTTTEECSEEEEEE-----SSHHHHHHHHHHHTTCEE
T ss_pred EEeCCCCCCCHHHHHHHHHHhCC--cceeeeeeecccCCccccceEEE-----CCHHHHHHHHHHhCCCEE
Confidence 34459999999999999999997 555554 233 1222221 146777777765333333
No 8
>d1xksa_ b.69.14.1 (A:) Nuclear pore complex protein Nup133 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.05 E-value=9.8 Score=38.18 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=35.0
Q ss_pred CCCCCCCccccccccccccccccCCCCCCcc-eEEeeeeeee
Q 006910 568 TGPPVPVRTQKLLKFVDTSQLCRGPQDSPGH-WLVTGAKLDL 608 (626)
Q Consensus 568 ~~~p~~~~~~kl~~~vd~~e~~~gp~d~pg~-w~vtgakl~~ 608 (626)
=|+|.|++...-|.|-|.++-+.+==+.=|| |+|+|-||.|
T Consensus 10 ~g~~LPv~V~EaLt~a~~~~~~s~~~s~~G~awvv~g~~l~V 51 (403)
T d1xksa_ 10 FGSSLPVKVMEALTLAEVDDQLTINIDEGGWACLVCKEKLII 51 (403)
T ss_dssp CSSCCCHHHHHHHHHCCTTSCEEEEECTTSEEEEEETTEEEE
T ss_pred CCCCCcHHHHHHhhhcCCCCceEEEECCCcEEEEEECCEEEE
Confidence 4889999999999999988888877666685 9999999977
No 9
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.87 E-value=31 Score=26.63 Aligned_cols=29 Identities=7% Similarity=0.289 Sum_probs=23.8
Q ss_pred HHhhCCCCCCHHHHHHHHHccceEEEEeeEE
Q 006910 176 VRNAVPSSWDPFALARFIEKYGTHIIVGLSI 206 (626)
Q Consensus 176 F~~aLP~~ydp~~Y~~FIe~YGTHyItsvtL 206 (626)
|...||...+..++.+++..||. |+++.|
T Consensus 12 ~V~nLp~~~~e~~l~~~F~~~G~--i~~v~i 40 (94)
T d2cpha1 12 LVRNIPFQANQREIRELFSTFGE--LKTVRL 40 (94)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSC--EEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHHhCC--ceEEEE
Confidence 45569999999999999999996 555554
No 10
>d1e0ta1 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escherichia coli [TaxId: 562]}
Probab=17.75 E-value=25 Score=27.60 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=15.8
Q ss_pred eeeeeeecCceEEEEEEe
Q 006910 602 TGAKLDLEKGKICLRVKF 619 (626)
Q Consensus 602 tgakl~~~~gki~l~vk~ 619 (626)
.|.++.+++|+|.|+|.-
T Consensus 50 ~Gd~IlidDG~i~l~V~~ 67 (98)
T d1e0ta1 50 VGNTVLVDDGLIGMEVTA 67 (98)
T ss_dssp TTCEEEETTTTEEEEEEE
T ss_pred CCcEEEEcCCceeEEEee
Confidence 478999999999999963
Done!