BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006911
(626 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 100 bits (248), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Query: 370 LKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLT 429
+++V F + E LDA+C+ +KP FTE ++++REGDP++E++F+++G L + + D
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVT-TDGG 66
Query: 430 NGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVF 489
R L++ DF G EL+ WAL S ST+T++ALT +EAF L+AD+LK V
Sbjct: 67 RSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVA 126
Query: 490 NE 491
++
Sbjct: 127 SQ 128
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 342 NHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAH 401
N ID+ LL + P EL I L LL+ + F L +L +K +F
Sbjct: 50 NGIDVSELLKDFPDELRADIAMHLNKELLQ-LPLFESASRGCLRSLSLIIKTSFCAPGEF 108
Query: 402 IIREGDPIDELIFVMQGNL 420
+IR+GD + + FV G++
Sbjct: 109 LIRQGDALQAIYFVCSGSM 127
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 309 KPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWH 368
K +++EE+ ++ L ++L+ ++ Y Y R + D ++ + + + + + C
Sbjct: 13 KLKQVEEYMQYRKLPSHLRNKILDYYEY-RYRGKMFDERHIFREVSESIRQDVANYNCRD 71
Query: 369 LLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQG 418
L+ V F + + ++ F ++I+EG D + F+ QG
Sbjct: 72 LVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQG 121
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 362 KRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGN 419
KR++ L KV L + + D ++P F + I+ +G+P DE +++G+
Sbjct: 149 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGS 206
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 362 KRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGN 419
KR++ L KV L + + D ++P F + I+ +G+P DE +++G+
Sbjct: 151 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGS 208
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 362 KRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGN 419
KR++ L KV L + + D ++P F + I+ +G+P DE +++G+
Sbjct: 147 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGS 204
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 16/82 (19%)
Query: 347 ENLLNNIPKELGKKIKRELCWHLLKKVHE----FRMLKEETLDALCDCVKPTFFTEHAH- 401
E +L PK++ + ++C HL +KV + FR+ + L AL F T H
Sbjct: 6 EKVLQICPKDM----RADICVHLNRKVFKEHPAFRLASDGCLRAL----AMEFQTVHCAP 57
Query: 402 ---IIREGDPIDELIFVMQGNL 420
I G+ +D L FV+ G+L
Sbjct: 58 GDLIYHAGESVDSLCFVVSGSL 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,822,422
Number of Sequences: 62578
Number of extensions: 730874
Number of successful extensions: 1867
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1858
Number of HSP's gapped (non-prelim): 12
length of query: 626
length of database: 14,973,337
effective HSP length: 105
effective length of query: 521
effective length of database: 8,402,647
effective search space: 4377779087
effective search space used: 4377779087
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)