Query 006911
Match_columns 626
No_of_seqs 508 out of 3162
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 16:15:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 8.8E-78 1.9E-82 656.9 41.0 454 4-502 67-543 (727)
2 PLN03192 Voltage-dependent pot 100.0 1E-63 2.2E-68 580.5 42.6 433 3-508 50-502 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 2.2E-61 4.7E-66 490.0 36.0 390 53-505 32-436 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 8E-63 1.7E-67 504.1 19.3 440 6-503 209-669 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 2E-54 4.3E-59 444.3 27.3 419 6-511 219-660 (815)
6 PRK09392 ftrB transcriptional 99.6 1.5E-14 3.2E-19 144.4 15.1 149 367-527 6-157 (236)
7 PRK11753 DNA-binding transcrip 99.5 3.1E-13 6.8E-18 132.3 16.9 140 377-527 6-149 (211)
8 KOG3713 Voltage-gated K+ chann 99.5 8.7E-14 1.9E-18 144.6 13.0 66 245-310 379-444 (477)
9 PRK11161 fumarate/nitrate redu 99.5 4.4E-13 9.6E-18 133.6 14.7 151 370-533 15-170 (235)
10 cd00038 CAP_ED effector domain 99.4 2.9E-12 6.4E-17 111.4 12.1 114 375-499 1-114 (115)
11 COG0664 Crp cAMP-binding prote 99.4 8.7E-12 1.9E-16 121.7 14.6 151 371-533 3-157 (214)
12 PF00027 cNMP_binding: Cyclic 99.4 5.2E-12 1.1E-16 105.5 10.9 91 393-494 1-91 (91)
13 PRK10402 DNA-binding transcrip 99.4 6.5E-12 1.4E-16 124.4 13.1 132 384-526 24-158 (226)
14 smart00100 cNMP Cyclic nucleot 99.3 2.1E-11 4.5E-16 106.6 13.8 117 375-500 1-117 (120)
15 TIGR03697 NtcA_cyano global ni 99.3 1.2E-11 2.6E-16 119.3 13.0 128 399-535 1-131 (193)
16 COG2905 Predicted signal-trans 99.3 2.6E-11 5.7E-16 127.6 13.9 128 367-509 6-133 (610)
17 KOG0614 cGMP-dependent protein 99.3 1.2E-11 2.7E-16 128.2 8.6 125 363-497 267-392 (732)
18 PRK09391 fixK transcriptional 99.3 6.3E-11 1.4E-15 117.7 13.3 132 386-531 33-167 (230)
19 PF00520 Ion_trans: Ion transp 99.2 1.7E-10 3.7E-15 111.1 13.7 182 57-292 4-200 (200)
20 PF07885 Ion_trans_2: Ion chan 99.2 1E-10 2.2E-15 95.4 9.2 55 243-297 24-78 (79)
21 PLN02868 acyl-CoA thioesterase 99.2 1.6E-10 3.4E-15 124.8 13.2 113 367-493 7-119 (413)
22 KOG1113 cAMP-dependent protein 99.2 4.1E-11 9E-16 119.4 6.9 117 367-499 121-237 (368)
23 KOG0614 cGMP-dependent protein 99.2 2.3E-11 5.1E-16 126.2 5.3 115 362-492 148-262 (732)
24 KOG1545 Voltage-gated shaker-l 99.2 1.6E-11 3.4E-16 121.7 3.5 50 245-294 395-444 (507)
25 PRK13918 CRP/FNR family transc 99.1 3.3E-10 7.2E-15 110.1 12.3 123 390-531 5-133 (202)
26 KOG1419 Voltage-gated K+ chann 99.1 5.9E-10 1.3E-14 116.5 12.1 90 239-335 265-354 (654)
27 KOG1113 cAMP-dependent protein 98.9 3.7E-09 8E-14 105.7 7.1 116 363-493 235-350 (368)
28 KOG1420 Ca2+-activated K+ chan 98.5 9E-08 2E-12 100.3 4.9 62 242-303 287-348 (1103)
29 PRK10537 voltage-gated potassi 98.4 3.1E-06 6.7E-11 90.0 14.4 54 243-296 168-221 (393)
30 KOG4390 Voltage-gated A-type K 98.4 1.2E-08 2.5E-13 102.3 -5.6 57 242-298 355-415 (632)
31 KOG3684 Ca2+-activated K+ chan 98.2 8.2E-05 1.8E-09 77.3 16.8 92 240-339 284-375 (489)
32 KOG2968 Predicted esterase of 98.0 7.4E-06 1.6E-10 90.7 6.3 115 383-509 500-615 (1158)
33 PF01007 IRK: Inward rectifier 97.9 6.9E-05 1.5E-09 77.8 9.9 56 242-297 83-140 (336)
34 KOG1418 Tandem pore domain K+ 97.6 5.5E-05 1.2E-09 82.1 5.6 59 243-301 115-173 (433)
35 KOG2968 Predicted esterase of 97.5 0.00055 1.2E-08 76.4 11.0 118 387-509 111-229 (1158)
36 PF04831 Popeye: Popeye protei 97.2 0.013 2.8E-07 52.7 13.7 123 378-511 14-138 (153)
37 PRK11832 putative DNA-binding 97.2 0.0096 2.1E-07 57.0 13.8 108 383-505 14-122 (207)
38 PF08412 Ion_trans_N: Ion tran 96.8 0.0004 8.7E-09 55.3 0.7 39 3-49 35-74 (77)
39 KOG4404 Tandem pore domain K+ 96.6 0.002 4.3E-08 64.4 3.9 60 243-302 186-253 (350)
40 KOG4404 Tandem pore domain K+ 96.4 0.00066 1.4E-08 67.8 -0.9 52 243-294 80-131 (350)
41 KOG3827 Inward rectifier K+ ch 96.3 0.014 3.1E-07 59.9 8.1 56 243-298 112-169 (400)
42 KOG3542 cAMP-regulated guanine 95.9 0.024 5.2E-07 61.6 7.9 110 366-491 279-390 (1283)
43 KOG1418 Tandem pore domain K+ 95.2 0.0038 8.3E-08 67.6 -1.2 48 242-289 241-296 (433)
44 KOG2302 T-type voltage-gated C 94.5 0.31 6.6E-06 55.7 11.3 35 57-94 1163-1204(1956)
45 KOG3542 cAMP-regulated guanine 91.8 0.24 5.2E-06 54.2 5.1 90 368-481 37-126 (1283)
46 KOG3193 K+ channel subunit [In 91.7 0.3 6.5E-06 52.2 5.6 40 245-284 219-258 (1087)
47 COG4709 Predicted membrane pro 87.8 3.1 6.7E-05 38.9 8.3 75 310-386 7-85 (195)
48 PLN03223 Polycystin cation cha 84.5 60 0.0013 39.8 18.3 27 273-299 1399-1425(1634)
49 PF08006 DUF1700: Protein of u 84.5 5.1 0.00011 37.9 8.5 55 310-366 7-65 (181)
50 PF07883 Cupin_2: Cupin domain 72.7 6 0.00013 30.5 4.1 46 394-447 3-49 (71)
51 PF00060 Lig_chan: Ligand-gate 72.3 3.5 7.6E-05 37.1 3.1 75 240-320 41-115 (148)
52 PRK13290 ectC L-ectoine syntha 69.2 24 0.00052 31.2 7.5 69 392-480 38-106 (125)
53 PLN03192 Voltage-dependent pot 63.2 2.9E+02 0.0063 32.9 17.5 43 320-367 357-399 (823)
54 KOG3676 Ca2+-permeable cation 60.9 1.6E+02 0.0034 34.2 13.5 73 256-329 601-680 (782)
55 PF05899 Cupin_3: Protein of u 57.9 13 0.00029 29.4 3.5 30 410-446 26-55 (74)
56 PF14377 DUF4414: Domain of un 57.5 19 0.00041 30.9 4.6 44 321-364 52-105 (108)
57 PF13314 DUF4083: Domain of un 55.4 40 0.00087 25.2 5.2 45 271-318 6-56 (58)
58 KOG0500 Cyclic nucleotide-gate 52.8 3.5E+02 0.0076 29.7 14.9 83 328-429 250-358 (536)
59 PF00520 Ion_trans: Ion transp 52.7 1.7E+02 0.0037 26.9 11.0 52 238-289 136-192 (200)
60 TIGR03037 anthran_nbaC 3-hydro 49.0 44 0.00095 30.8 5.7 57 409-483 48-104 (159)
61 KOG2302 T-type voltage-gated C 45.3 6.2E+02 0.014 30.5 16.9 31 255-285 346-381 (1956)
62 COG0662 {ManC} Mannose-6-phosp 43.9 50 0.0011 29.1 5.3 50 389-446 36-86 (127)
63 KOG0498 K+-channel ERG and rel 41.2 1.4E+02 0.003 34.7 9.4 41 352-392 372-417 (727)
64 PF10011 DUF2254: Predicted me 39.9 1.3E+02 0.0028 32.1 8.5 61 240-300 97-157 (371)
65 COG1917 Uncharacterized conser 39.6 59 0.0013 28.6 5.1 50 391-448 45-95 (131)
66 KOG3609 Receptor-activated Ca2 38.0 2.4E+02 0.0053 32.9 10.5 54 245-298 555-609 (822)
67 PF07697 7TMR-HDED: 7TM-HD ext 38.0 1.8E+02 0.004 27.9 8.8 58 352-410 147-207 (222)
68 KOG1054 Glutamate-gated AMPA-t 37.0 55 0.0012 36.3 5.1 71 246-322 598-668 (897)
69 PRK13264 3-hydroxyanthranilate 34.7 65 0.0014 30.2 4.6 61 407-485 52-112 (177)
70 COG3718 IolB Uncharacterized e 33.4 1.1E+02 0.0025 29.8 6.0 34 391-424 31-64 (270)
71 smart00835 Cupin_1 Cupin. This 32.6 1.1E+02 0.0024 27.6 5.8 56 390-448 31-88 (146)
72 PF02037 SAP: SAP domain; Int 32.1 47 0.001 22.0 2.4 26 309-334 5-35 (35)
73 PF14377 DUF4414: Domain of un 29.9 1.3E+02 0.0028 25.8 5.4 48 321-368 8-68 (108)
74 PF12973 Cupin_7: ChrR Cupin-l 29.8 1.2E+02 0.0026 24.8 5.1 64 390-479 25-88 (91)
75 PF08566 Pam17: Mitochondrial 25.4 3.6E+02 0.0079 25.2 7.7 29 268-296 73-102 (173)
76 PHA03029 hypothetical protein; 25.0 3.2E+02 0.0069 21.5 6.0 38 267-304 2-39 (92)
77 PRK06771 hypothetical protein; 24.9 3.8E+02 0.0082 22.3 6.8 48 285-332 14-61 (93)
78 PRK09108 type III secretion sy 24.3 3.4E+02 0.0074 28.7 8.4 69 264-332 173-241 (353)
79 PRK04190 glucose-6-phosphate i 24.3 2.7E+02 0.0059 26.6 7.0 36 409-447 97-132 (191)
80 PHA01757 hypothetical protein 24.0 3E+02 0.0064 22.0 5.8 48 266-314 3-50 (98)
81 COG5559 Uncharacterized conser 23.3 94 0.002 23.3 2.7 22 319-340 8-29 (65)
82 TIGR00933 2a38 potassium uptak 21.8 1.1E+02 0.0025 32.7 4.4 42 243-284 231-274 (390)
83 PF14841 FliG_M: FliG middle d 21.6 1.3E+02 0.0028 24.1 3.6 56 324-394 14-69 (79)
84 TIGR03404 bicupin_oxalic bicup 21.5 1.9E+02 0.0041 30.7 5.9 53 392-447 70-122 (367)
85 PF01484 Col_cuticle_N: Nemato 21.4 3.1E+02 0.0068 19.5 6.2 40 273-312 9-48 (53)
86 PRK11171 hypothetical protein; 20.8 2.2E+02 0.0048 28.7 6.0 50 390-447 185-235 (266)
87 PF06305 DUF1049: Protein of u 20.2 3.5E+02 0.0075 20.5 5.8 27 273-299 18-44 (68)
88 PF08016 PKD_channel: Polycyst 20.1 1.1E+03 0.024 25.3 12.2 29 270-298 391-420 (425)
89 PF11699 CENP-C_C: Mif2/CENP-C 20.0 1.2E+02 0.0025 24.9 3.0 29 411-447 35-63 (85)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.8e-78 Score=656.93 Aligned_cols=454 Identities=31% Similarity=0.546 Sum_probs=394.0
Q ss_pred ceeecCCCCcc-chhHHH--HHHHHHhhccceeeeeeecCCCceeeeccccchHHHHHHHHH---HHHHHHHHc--eeeC
Q 006911 4 MLTLLRQWPYF-DWMKII--FSVIEIQVEALYFYAPVINDERKCFDMHQQFLENAFVLGFFL---ICIHMVIFL--SYKN 75 (626)
Q Consensus 4 ~~~i~P~s~~~-~W~~~~--~~~~~~~~~pl~~~~~~~~~~~~~f~~~~~~~~~~~i~~~i~---F~~Di~l~f--~y~~ 75 (626)
.+||+|.|+|+ .||.++ +|+++++++|++||++.....+.| .|......+++++.++ |++||+++| ||++
T Consensus 67 ~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~ 144 (727)
T KOG0498|consen 67 KWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVD 144 (727)
T ss_pred ceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEEC
Confidence 46999999999 999888 888899999999999999888888 6777778888888877 999999999 9999
Q ss_pred CCcc-EE--------Eecccc---hhHHHHH-HHhhccC--CCccccCchhHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 006911 76 PLGF-VI--------NFLIYY---SILAMAG-IILLEKQ--GYPIFFDPMKYFKILLCIRYLARIISIYSLFSKAVRSST 140 (626)
Q Consensus 76 ~~~~-v~--------~Ylk~~---D~is~lP-~~i~~~~--~~~~~~~~~~~lrl~~l~~~l~Rllr~~rl~~~~~~~~~ 140 (626)
+.+. ++ ||+|+| |++|++| +.+.... ++.....-...+..+.++++++||.|++++++.+.+..+
T Consensus 145 ~~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~ 224 (727)
T KOG0498|consen 145 PSSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTG 224 (727)
T ss_pred CCCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9776 55 999999 9999999 6554321 121101112234445556678999999999999999999
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhccCCCceeeeeccCCcCCcccccccCCCCCCCCCc
Q 006911 141 ELSEAKWVKIAVNLYLYLQAANVFGGLWYFMAIERVIECWTKACINHTGQHCHFSCRVNLEEDRTYINGFCPTKIRNTTI 220 (626)
Q Consensus 141 ~~~~~~~~~~~~~L~~~~l~~H~~aC~w~~i~~~~~~~~w~~~c~~~~g~~c~~~~~~~~~~~~sWi~~~~~~~~~~~~~ 220 (626)
+..+++|.+++++|+++++++||+||+||++|.++...||.+ .+|+...+..-+..+..
T Consensus 225 ~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~---------------------~tw~~~l~~~~~~~~~~ 283 (727)
T KOG0498|consen 225 FVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRK---------------------ATWLGSLGRLLSCYNLS 283 (727)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc---------------------cccccccccccccCccc
Confidence 998999999778899999999999999999998777666542 16776532100122333
Q ss_pred ccccccccccccCcccCchhHHHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006911 221 HDFGIFHGALESGIVEGTSILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRT 300 (626)
Q Consensus 221 ~~~g~y~~~~~~~~~~~~~~~~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~ 300 (626)
++||+| +++.+|++|+||+++||||+||||++|+|..|++|+|++|++|.++||++||+|+++++..+
T Consensus 284 ~~fg~~------------s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~t 351 (727)
T KOG0498|consen 284 FTFGIY------------SLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLT 351 (727)
T ss_pred ccccch------------hHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHh
Confidence 567654 56679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchHHHHhhcccCCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHhhCcHHHHHHHHHHHHHHHHhhccccccCc
Q 006911 301 VRLKEMTVKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLK 380 (626)
Q Consensus 301 ~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~L~~~~~F~~ls 380 (626)
.+..+|+.++.++++||++++||++||+||++|++|+|+.++|+||++++++||..||.+|..++|.++++++|+|+++|
T Consensus 352 sR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md 431 (727)
T KOG0498|consen 352 SRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMD 431 (727)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCcc
Q 006911 381 EETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLF 460 (626)
Q Consensus 381 ~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~ 460 (626)
++++.+|+.++++..|.|||+|++|||+.++||||.+|.+++...++|.. .+...+++||+|||.-+.|++.
T Consensus 432 ~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~---~~~~~L~~Gd~~GeEl~~~~~~----- 503 (727)
T KOG0498|consen 432 DGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF---FVVAILGPGDFFGEELLTWCLD----- 503 (727)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce---EEEEEecCCCccchHHHHHHhc-----
Confidence 99999999999999999999999999999999999999999998776643 5678999999999654546553
Q ss_pred CccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHH
Q 006911 461 EFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQL 502 (626)
Q Consensus 461 ~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~ 502 (626)
.|+++||+|+|.|+++.|++++|..+++++|.+++.+++.
T Consensus 504 --~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~ 543 (727)
T KOG0498|consen 504 --LPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQH 543 (727)
T ss_pred --CCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHh
Confidence 1568899999999999999999999999999777777763
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1e-63 Score=580.45 Aligned_cols=433 Identities=17% Similarity=0.240 Sum_probs=342.3
Q ss_pred CceeecCCCCcc-chhHHHHHHHHHhhccceeeeeeecCCCceeeeccc--cchHHHHHHHHHHHHHHHHHc--eeeCCC
Q 006911 3 DMLTLLRQWPYF-DWMKIIFSVIEIQVEALYFYAPVINDERKCFDMHQQ--FLENAFVLGFFLICIHMVIFL--SYKNPL 77 (626)
Q Consensus 3 ~~~~i~P~s~~~-~W~~~~~~~~~~~~~pl~~~~~~~~~~~~~f~~~~~--~~~~~~i~~~i~F~~Di~l~f--~y~~~~ 77 (626)
+.++|+|.++++ .||.++++++ +|..++.|++++|..... ....+.++.+++|++||+++| +|++++
T Consensus 50 ~~~ii~P~~~~~~~Wd~~~~~~~--------~y~~~~~p~~~~F~~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~ 121 (823)
T PLN03192 50 DGWIISPMDSRYRWWETLMVVLV--------AYSAWVYPFEVAFLNASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPR 121 (823)
T ss_pred CCeEECCCCcHHHHHHHHHHHHH--------HHHHHHHHHHHHeeCCCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCC
Confidence 568999999999 9998883332 334444566666632211 112334444566999999999 999886
Q ss_pred c-cEE--------Eecccc---hhHHHHH-HHhh-ccCCCccccCchhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhH
Q 006911 78 G-FVI--------NFLIYY---SILAMAG-IILL-EKQGYPIFFDPMKYFKILLCIRYLARIISIYSLFSKAVRSSTELS 143 (626)
Q Consensus 78 ~-~v~--------~Ylk~~---D~is~lP-~~i~-~~~~~~~~~~~~~~lrl~~l~~~l~Rllr~~rl~~~~~~~~~~~~ 143 (626)
+ .++ ||+|+| |++|++| +++. ...+........++||++| +.|+.|+.+++..+++. +.
T Consensus 122 ~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llr----l~Rl~ri~~~~~~le~~---~~ 194 (823)
T PLN03192 122 TQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLR----FWRLRRVKQLFTRLEKD---IR 194 (823)
T ss_pred CcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHH----HHHHHHHHHHHHHHHHH---HH
Confidence 5 333 999999 9999999 5442 2222211012233444332 23444444444444332 22
Q ss_pred HhHHHHHHHHHH-HHHHHHHHHHHHHHhHhHHHHHHHHHHHhhccCCCceeeeeccCCcCCcccccccCCCCCCCCCccc
Q 006911 144 EAKWVKIAVNLY-LYLQAANVFGGLWYFMAIERVIECWTKACINHTGQHCHFSCRVNLEEDRTYINGFCPTKIRNTTIHD 222 (626)
Q Consensus 144 ~~~~~~~~~~L~-~~~l~~H~~aC~w~~i~~~~~~~~w~~~c~~~~g~~c~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~ 222 (626)
.+.....+.+++ ..++++||+||+||+++... . ..+.+|+..... +
T Consensus 195 ~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~------------~------------~~~~~Wi~~~~~---------~ 241 (823)
T PLN03192 195 FSYFWIRCARLLSVTLFLVHCAGCLYYLIADRY------------P------------HQGKTWIGAVIP---------N 241 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------C------------CCCCchHHHhhh---------c
Confidence 121122244544 44568999999999998310 0 244689854111 1
Q ss_pred ccccccccccCcccCchhHHHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006911 223 FGIFHGALESGIVEGTSILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVR 302 (626)
Q Consensus 223 ~g~y~~~~~~~~~~~~~~~~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~ 302 (626)
..+.+++.+|+.|+|||++|||||||||++|.|..|++|++++|++|+++|||++|+|++++.+.+.+
T Consensus 242 ------------~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~ 309 (823)
T PLN03192 242 ------------FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRR 309 (823)
T ss_pred ------------cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHhhcccCCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHhhCcHHHHHHHHHHHHHHHHhhccccccCcHH
Q 006911 303 LKEMTVKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEE 382 (626)
Q Consensus 303 ~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~L~~~~~F~~ls~~ 382 (626)
+.+|+++|+.+++||+++++|++||+||++|+++.|+. ++.+++++++.||++||.+|..+++.+.++++++|++++++
T Consensus 310 ~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~ 388 (823)
T PLN03192 310 TMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSRE 388 (823)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHH
Confidence 99999999999999999999999999999999999975 46789999999999999999999999999999999999999
Q ss_pred HHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCc
Q 006911 383 TLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEF 462 (626)
Q Consensus 383 ~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~ 462 (626)
++.+|+..++++.|.|||.|+.+||.++++|||.+|+|++...+++++ .++..+++|++|||.+++ .+
T Consensus 389 ~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e---~~l~~l~~Gd~FGE~~~l---~~------ 456 (823)
T PLN03192 389 ILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKE---RVVGTLGCGDIFGEVGAL---CC------ 456 (823)
T ss_pred HHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcc---eeeEEccCCCEecchHHh---cC------
Confidence 999999999999999999999999999999999999999987555544 456889999999999873 11
Q ss_pred cceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006911 463 SKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYT 508 (626)
Q Consensus 463 ~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~ 508 (626)
.|++++++|.++|+++.|++++|.++++++|+.+..+++...++.+
T Consensus 457 ~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~ 502 (823)
T PLN03192 457 RPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHK 502 (823)
T ss_pred CCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 2788899999999999999999999999999999988888776653
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-61 Score=490.00 Aligned_cols=390 Identities=20% Similarity=0.253 Sum_probs=329.8
Q ss_pred hHHHHHHHHHHHHHHHHHc--eeeCCCccEE-------Eecccc----hhHHHHH-HHhhccCCCccccCchhHHHHHHH
Q 006911 53 ENAFVLGFFLICIHMVIFL--SYKNPLGFVI-------NFLIYY----SILAMAG-IILLEKQGYPIFFDPMKYFKILLC 118 (626)
Q Consensus 53 ~~~~i~~~i~F~~Di~l~f--~y~~~~~~v~-------~Ylk~~----D~is~lP-~~i~~~~~~~~~~~~~~~lrl~~l 118 (626)
..++++.+++|++||+++. +|.++|..|. ||..+- |++|++| +++....++.. +.|
T Consensus 32 l~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~~~~~~------~~r---- 101 (536)
T KOG0500|consen 32 LPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFKDGSAS------LER---- 101 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhcCCcch------HHH----
Confidence 4556666777999999999 9999998876 999776 9999999 88877666533 333
Q ss_pred HHHHHHHHHHHHhHHHHHhhhhhhHHhHHHHHHHHHHHHH-HHHHHHHHHHHhHhHHHHHHHHHHHhhccCCCceeeeec
Q 006911 119 IRYLARIISIYSLFSKAVRSSTELSEAKWVKIAVNLYLYL-QAANVFGGLWYFMAIERVIECWTKACINHTGQHCHFSCR 197 (626)
Q Consensus 119 ~~~l~Rllr~~rl~~~~~~~~~~~~~~~~~~~~~~L~~~~-l~~H~~aC~w~~i~~~~~~~~w~~~c~~~~g~~c~~~~~ 197 (626)
++||+|++|++.++.+.+..... .....+.+|+.++ +++||+||+||+++. ..|
T Consensus 102 ---~nRllk~yRl~~F~~rTetrT~~-Pn~fri~~lv~~~~ilfHWNaClYf~iS~-------------~~g-------- 156 (536)
T KOG0500|consen 102 ---LNRLLKIYRLFEFFDRTETRTTY-PNAFRISKLVHYCLILFHWNACLYFLISK-------------AIG-------- 156 (536)
T ss_pred ---HHHHHHHHHHHHHHHHhccccCC-chHHHHHHHHHHHHHHHHHhhHHHHhhhH-------------hcC--------
Confidence 57888899999998877653221 2233355666555 689999999999995 233
Q ss_pred cCCcCCcccccccCCCCCCCCCcccccccccccccCcccCchhHHHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHH
Q 006911 198 VNLEEDRTYINGFCPTKIRNTTIHDFGIFHGALESGIVEGTSILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILV 277 (626)
Q Consensus 198 ~~~~~~~sWi~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~ 277 (626)
.+.++|....- .++.| +.....+...+|+.|+|||..||||+|-- ..|.|+.|.+|.|+-
T Consensus 157 ---~~~d~wvY~~i-------~d~~~---------~~c~~~n~~ReY~~S~YWStLTlTTiGe~-P~P~t~~ey~F~I~d 216 (536)
T KOG0500|consen 157 ---FTTDDWVYPKI-------NDPEF---------ATCDAGNLTREYLYSLYWSTLTLTTIGEQ-PPPVTSSEYAFVIVD 216 (536)
T ss_pred ---ccccccccCCc-------cCccc---------cccchhHHHHHHHHHHHHHhhhhhhccCC-CCCCcCchhhHHHHH
Confidence 45677986421 11122 11123568899999999999999999974 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhchHHHHhhcccCCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHhhCcHHH
Q 006911 278 VSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKEL 357 (626)
Q Consensus 278 ~i~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L 357 (626)
.++|+++||-|+|+|+++++|+++...+|+++|+.+++||+.|++|..++.||.+||+|.|.+++..+|+++++.||+.|
T Consensus 217 ~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL 296 (536)
T KOG0500|consen 217 TLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKL 296 (536)
T ss_pred HHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeee
Q 006911 358 GKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRD 437 (626)
Q Consensus 358 r~ei~~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~ 437 (626)
|.||+.+++.+.|+++++|+++.+.++.+|+.+++++.|.|||+|+++||.+.+||+|.+|.+++...|++. ...
T Consensus 297 ~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t-----~~~ 371 (536)
T KOG0500|consen 297 KAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVT-----VFV 371 (536)
T ss_pred HhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcE-----EEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999866543 247
Q ss_pred eccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 006911 438 HLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWR 505 (626)
Q Consensus 438 ~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~ 505 (626)
.+++|++|||+++++ +. ...+...|+++++++.++++++|+++|+.+++++||+-...+.+...+
T Consensus 372 ~L~~G~~FGEisIln-i~--g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~kgr~ 436 (536)
T KOG0500|consen 372 TLKAGSVFGEISILN-IK--GNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEKGRQ 436 (536)
T ss_pred EecCCceeeeeEEEE-Ec--CcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 899999999999843 22 223344899999999999999999999999999999876666655433
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-63 Score=504.12 Aligned_cols=440 Identities=18% Similarity=0.243 Sum_probs=368.2
Q ss_pred eecCCCCcc-chhHHHHHHHHHhhccceeeeeeecCCCceeeeccccchHHHHHHHHH---HHHHHHHHc--eeeCCCcc
Q 006911 6 TLLRQWPYF-DWMKIIFSVIEIQVEALYFYAPVINDERKCFDMHQQFLENAFVLGFFL---ICIHMVIFL--SYKNPLGF 79 (626)
Q Consensus 6 ~i~P~s~~~-~W~~~~~~~~~~~~~pl~~~~~~~~~~~~~f~~~~~~~~~~~i~~~i~---F~~Di~l~f--~y~~~~~~ 79 (626)
||--.+.|+ +||-+++|+ .||+++++||+++|.-.....+.|.+++.++ |++||++|| +|+-+||+
T Consensus 209 IiLHYcaFKt~WDWvIL~L--------TFYTAimVPyNvaFKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGE 280 (971)
T KOG0501|consen 209 IILHYCAFKTIWDWVILIL--------TFYTAIMVPYNVAFKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGE 280 (971)
T ss_pred EEEeeehhhhHHHHHHHHH--------HHHHHheeeeeeeecccccCceeEEEecchhhhhhhhhhhhhcceeeecCCCc
Confidence 555678899 999766554 3899999999999976554557788888776 999999999 99999999
Q ss_pred EE--------Eecccc---hhHHHHH-HHhhccCCCcc-ccCchhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHhH
Q 006911 80 VI--------NFLIYY---SILAMAG-IILLEKQGYPI-FFDPMKYFKILLCIRYLARIISIYSLFSKAVRSSTELSEAK 146 (626)
Q Consensus 80 v~--------~Ylk~~---D~is~lP-~~i~~~~~~~~-~~~~~~~lrl~~l~~~l~Rllr~~rl~~~~~~~~~~~~~~~ 146 (626)
|+ ||+|+| |++||+| +++.++..... .-.++..|+ ..||+|+.|+.++++++.++=
T Consensus 281 VvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~degI~SLFSaLK-------VVRLLRLGRVaRKLD~YlEYG---- 349 (971)
T KOG0501|consen 281 VVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLFSALK-------VVRLLRLGRVARKLDHYLEYG---- 349 (971)
T ss_pred eecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcccccHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh----
Confidence 88 999999 9999999 88876643321 133445555 568888899999998875432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHhhccCCCceeeeeccCCcCCcccccccCCCCCCCCCcccccc
Q 006911 147 WVKIAVNLYLYLQAANVFGGLWYFMA-IERVIECWTKACINHTGQHCHFSCRVNLEEDRTYINGFCPTKIRNTTIHDFGI 225 (626)
Q Consensus 147 ~~~~~~~L~~~~l~~H~~aC~w~~i~-~~~~~~~w~~~c~~~~g~~c~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~ 225 (626)
-...++.+..|++++||+||+||.+| .+--++ .++....++|+..... +....|+|..
T Consensus 350 AA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~------------------~~n~i~~dsWL~kLa~---~~~tpY~~~~ 408 (971)
T KOG0501|consen 350 AAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDE------------------MDNTIQPDSWLWKLAN---DIGTPYNYNL 408 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeccchheecc------------------cccccccchHHHHHHh---hcCCCceecc
Confidence 12234445578899999999999999 321110 1122456789876543 2345555531
Q ss_pred cccccccC-cccCchhHHHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006911 226 FHGALESG-IVEGTSILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLK 304 (626)
Q Consensus 226 y~~~~~~~-~~~~~~~~~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~~ 304 (626)
. ..| .+.+++....|+.|+||.++.|||||+|.|.|.|+.|++|++++|++|+++||-|+|+++.|++++.+..+
T Consensus 409 s----~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~ 484 (971)
T KOG0501|consen 409 S----NKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTN 484 (971)
T ss_pred C----CCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhH
Confidence 1 111 12356778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchHHHHhhcccCCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHhhCcHHHHHHHHHHHHHHHHhhccccccCcHHHH
Q 006911 305 EMTVKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETL 384 (626)
Q Consensus 305 ~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~L~~~~~F~~ls~~~l 384 (626)
.|++.++.+.+||+-..+|+.|.+||.+|.--.|...+|+|-+++++-.|..+|.+|..+++++..+++|.|+-.|+..+
T Consensus 485 rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCL 564 (971)
T KOG0501|consen 485 RYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCL 564 (971)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccc
Q 006911 385 DALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSK 464 (626)
Q Consensus 385 ~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~ 464 (626)
+.|+..++..+-.|||.|++.|+..+.++||++|.+++...|+ ++++++.||+||+...- - . ..+.
T Consensus 565 RaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE-------VVAILGKGDVFGD~FWK--~--~---t~~q 630 (971)
T KOG0501|consen 565 RALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE-------VVAILGKGDVFGDEFWK--E--N---TLGQ 630 (971)
T ss_pred HHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc-------EEEEeecCccchhHHhh--h--h---hhhh
Confidence 9999999999999999999999999999999999999987442 35899999999998541 1 1 2236
Q ss_pred eeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHH
Q 006911 465 STKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLA 503 (626)
Q Consensus 465 ~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~ 503 (626)
+.++++|+|+|.+..|.++.+.++++-|.+++..+.+.+
T Consensus 631 s~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl 669 (971)
T KOG0501|consen 631 SAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNL 669 (971)
T ss_pred hhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhce
Confidence 778999999999999999999999999999988887765
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2e-54 Score=444.27 Aligned_cols=419 Identities=13% Similarity=0.222 Sum_probs=347.8
Q ss_pred eecCCC-Ccc-chhHHH-HHHHHHhhccceeeeeeecCCCceeee----ccccchHHHHHHHHHHHHHHHHHc---eeeC
Q 006911 6 TLLRQW-PYF-DWMKII-FSVIEIQVEALYFYAPVINDERKCFDM----HQQFLENAFVLGFFLICIHMVIFL---SYKN 75 (626)
Q Consensus 6 ~i~P~s-~~~-~W~~~~-~~~~~~~~~pl~~~~~~~~~~~~~f~~----~~~~~~~~~i~~~i~F~~Di~l~f---~y~~ 75 (626)
.|||.. ++. .|-.++ +|+ .|.++.+|.+..|-. |.+.+...++.+++++++||++-= -|+.
T Consensus 219 sidp~~~r~Y~~WL~lVtlaf---------~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvr 289 (815)
T KOG0499|consen 219 SIDPYTDRLYLLWLLLVTLAF---------NWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVR 289 (815)
T ss_pred ccCcccchHHHHHHHHHHHHH---------hhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeee
Confidence 689999 666 996554 222 344444554444432 233345566677778999998644 7776
Q ss_pred CCccEE-------Eecccc----hhHHHHH-HHhhccCCCccccCchhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhH
Q 006911 76 PLGFVI-------NFLIYY----SILAMAG-IILLEKQGYPIFFDPMKYFKILLCIRYLARIISIYSLFSKAVRSSTELS 143 (626)
Q Consensus 76 ~~~~v~-------~Ylk~~----D~is~lP-~~i~~~~~~~~~~~~~~~lrl~~l~~~l~Rllr~~rl~~~~~~~~~~~~ 143 (626)
.|..|. ||+++. |++|++| ++++...|.. -++| ++|++|+..++......+..+
T Consensus 290 gG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~------p~wR-------~~R~lK~~sF~e~~~~Le~i~- 355 (815)
T KOG0499|consen 290 GGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFN------PMWR-------ANRMLKYTSFFEFNHHLESIM- 355 (815)
T ss_pred CceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccc------hhhh-------hhhHHHHHHHHHHHHHHHHHh-
Confidence 666665 999887 9999999 8887765543 4555 577777777776666555554
Q ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHHHhHhHHHHHHHHHHHhhccCCCceeeeeccCCcCCcccccccCCCCCCCCCccc
Q 006911 144 EAKWVKIAVNLYLYL-QAANVFGGLWYFMAIERVIECWTKACINHTGQHCHFSCRVNLEEDRTYINGFCPTKIRNTTIHD 222 (626)
Q Consensus 144 ~~~~~~~~~~L~~~~-l~~H~~aC~w~~i~~~~~~~~w~~~c~~~~g~~c~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~ 222 (626)
.+++...+++.+.|+ +++|+.||+||+.+. +.| .+.+.|+.+.
T Consensus 356 s~~y~~RV~rT~~YmlyilHinacvYY~~Sa-------------yqg-----------lG~~rWVydg------------ 399 (815)
T KOG0499|consen 356 SKAYIYRVIRTTGYLLYILHINACVYYWASA-------------YQG-----------LGTTRWVYDG------------ 399 (815)
T ss_pred cchhhhhhHHHHHHHHHHHhhhHHHHHHHHh-------------hcc-----------cccceeEEcC------------
Confidence 345556677777777 589999999999883 223 5677898431
Q ss_pred ccccccccccCcccCchhHHHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006911 223 FGIFHGALESGIVEGTSILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVR 302 (626)
Q Consensus 223 ~g~y~~~~~~~~~~~~~~~~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~ 302 (626)
....|++|+|||+.|++|+| |...|.|..|++|..+.-+.|+++||.+||.|-.++.+.+.+
T Consensus 400 -----------------~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~n 461 (815)
T KOG0499|consen 400 -----------------EGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATAN 461 (815)
T ss_pred -----------------CCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 22579999999999999999 678999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHhhcccCCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHhhCcHHHHHHHHHHHHHHHHhhccccccCcHH
Q 006911 303 LKEMTVKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEE 382 (626)
Q Consensus 303 ~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~L~~~~~F~~ls~~ 382 (626)
+..|++.|+..-.||++.++|+++|.||+.+|+|.|..++..||.+++..||..||.+++.+++...|.++.+|++++..
T Consensus 462 q~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~ 541 (815)
T KOG0499|consen 462 QNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQ 541 (815)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCc
Q 006911 383 TLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEF 462 (626)
Q Consensus 383 ~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~ 462 (626)
.+..++.+++...|.|||+|+++||++.+||+|..|+|+|....++.. ++..|.+|++|||++++ ...+.
T Consensus 542 mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~----Vl~tL~~GsVFGEISLL------aigG~ 611 (815)
T KOG0499|consen 542 MIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTK----VLVTLKAGSVFGEISLL------AIGGG 611 (815)
T ss_pred HHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCE----EEEEecccceeeeeeee------eecCC
Confidence 999999999999999999999999999999999999999997666654 56899999999999984 22233
Q ss_pred cceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006911 463 SKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTRRK 511 (626)
Q Consensus 463 ~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~~~ 511 (626)
..|+++|+|.++|.+++|+++|+.+++..||.-.+.+.+.+.+.+++..
T Consensus 612 nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkkAr~llk~na 660 (815)
T KOG0499|consen 612 NRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKKARVLLKQNA 660 (815)
T ss_pred CccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHHHHHHHHhcc
Confidence 4899999999999999999999999999999887777777666554433
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.60 E-value=1.5e-14 Score=144.40 Aligned_cols=149 Identities=15% Similarity=0.074 Sum_probs=125.4
Q ss_pred HHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 367 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 367 ~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
.++++.+++|..++++.++.+....+.+.|++|+.|+++|+.++++|+|.+|.|+++..+++++ .++..+++|++||
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~---~~i~~~~~g~~~g 82 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRE---TTLAILRPVSTFI 82 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCce---EEEEEeCCCchhh
Confidence 4578999999999999999999999999999999999999999999999999999997655544 4678999999999
Q ss_pred cchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCCCccc
Q 006911 447 AELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPLY 523 (626)
Q Consensus 447 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 523 (626)
+.+++ . ..++.++++|.++|+++.+++++|.+++.++|.++..++....+++.. +.......+.++|+
T Consensus 83 ~~~~~---~------~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rl 153 (236)
T PRK09392 83 LAAVV---L------DAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLVKSLKNQKLRSSAERL 153 (236)
T ss_pred hHHHh---C------CCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 98762 2 127788999999999999999999999999999999998887776643 33344555666666
Q ss_pred hhhh
Q 006911 524 VPLR 527 (626)
Q Consensus 524 ~~l~ 527 (626)
..+.
T Consensus 154 a~~L 157 (236)
T PRK09392 154 ANYL 157 (236)
T ss_pred HHHH
Confidence 5543
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.52 E-value=3.1e-13 Score=132.34 Aligned_cols=140 Identities=11% Similarity=0.086 Sum_probs=114.0
Q ss_pred ccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEec-CCccccceeeeeccCCCeEecchhhhhhc
Q 006911 377 RMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWALR 455 (626)
Q Consensus 377 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~~l~~G~~fGe~~l~~~l~ 455 (626)
+.+|++.++.++..++.+.|++|++|+.+|+.++++|||.+|.++++..+ +|++ ..+..+++|++||+.+++ .
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~---~~~~~~~~g~~~g~~~~~---~ 79 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKE---MILSYLNQGDFIGELGLF---E 79 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCE---EEEEEcCCCCEEeehhhc---c
Confidence 46899999999999999999999999999999999999999999999654 3333 467899999999998762 1
Q ss_pred ccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCCCccchhhh
Q 006911 456 DCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPLYVPLR 527 (626)
Q Consensus 456 ~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~ 527 (626)
+..++..+++|.++|+++.+++++|.++++++|++...+++...+++.. +..........+|+..+.
T Consensus 80 -----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Rl~~~L 149 (211)
T PRK11753 80 -----EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQNTSRKVGDLAFLDVTGRIAQTL 149 (211)
T ss_pred -----CCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHH
Confidence 1125777899999999999999999999999999988888777666633 223455566666665443
No 8
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.52 E-value=8.7e-14 Score=144.63 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhch
Q 006911 245 LHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKP 310 (626)
Q Consensus 245 ~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~ 310 (626)
-.++|||++|||||||||++|.|...++++..+.+.|+++.|+-|..|.+-++......++.++..
T Consensus 379 Pa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~ 444 (477)
T KOG3713|consen 379 PAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAP 444 (477)
T ss_pred cchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhh
Confidence 358999999999999999999999999999999999999999988877777766655554444333
No 9
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.48 E-value=4.4e-13 Score=133.65 Aligned_cols=151 Identities=11% Similarity=0.164 Sum_probs=118.4
Q ss_pred HhhccccccCcHHHHHHHHhhccc-eeeCCCcEEEccCCccCEEEEEEEceEEEEEecC-CccccceeeeeccCCCeEec
Q 006911 370 LKKVHEFRMLKEETLDALCDCVKP-TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 370 L~~~~~F~~ls~~~l~~L~~~l~~-~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~~l~~G~~fGe 447 (626)
+++.+.|..+++++++.|....+. ..|++|+.|+++||.++++|+|.+|.|+++..+. |++ .++..+.+|++||+
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e---~i~~~~~~gd~~g~ 91 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDE---QITGFHLAGDLVGF 91 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCE---EEEEeccCCceecc
Confidence 445555557999999999988864 6799999999999999999999999999997653 433 46678899999998
Q ss_pred chhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHhCCCCCCCccch
Q 006911 448 ELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYT---RRKFRFPKRRPSPLYV 524 (626)
Q Consensus 448 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 524 (626)
.++. . .++..+++|.++|+++.|++++|++++.++|.+...+++.+..+.. ++.......+.++|+.
T Consensus 92 ~~~~---~-------~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rla 161 (235)
T PRK11161 92 DAIG---S-------GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGDQEMILLLSKKNAEERLA 161 (235)
T ss_pred cccc---C-------CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 7541 1 1334589999999999999999999999999999998888876664 3333455666777776
Q ss_pred hhhhhhhhh
Q 006911 525 PLRDKVKEK 533 (626)
Q Consensus 525 ~l~~~~~~~ 533 (626)
.+.......
T Consensus 162 ~~L~~l~~~ 170 (235)
T PRK11161 162 AFIYNLSRR 170 (235)
T ss_pred HHHHHHHHH
Confidence 655544443
No 10
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.40 E-value=2.9e-12 Score=111.36 Aligned_cols=114 Identities=26% Similarity=0.394 Sum_probs=98.1
Q ss_pred ccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhh
Q 006911 375 EFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWAL 454 (626)
Q Consensus 375 ~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l 454 (626)
+|..++++.+..++..++...+.+|+.|+.+|+.++++|+|.+|.++++..+.++.. ..+..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~--~~~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGRE--QIVGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcE--EEEEecCCccCcChHHHh---
Confidence 478899999999999999999999999999999999999999999999876543222 456889999999998762
Q ss_pred cccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHH
Q 006911 455 RDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALV 499 (626)
Q Consensus 455 ~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~ 499 (626)
. ..++..+++|.++|.++.|++++|.++++++|.+...+
T Consensus 76 ~------~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 76 G------NGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred c------CCCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 1 12677799999999999999999999999999876543
No 11
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.37 E-value=8.7e-12 Score=121.73 Aligned_cols=151 Identities=16% Similarity=0.202 Sum_probs=118.6
Q ss_pred hhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecC-CccccceeeeeccCCCeEecch
Q 006911 371 KKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDFYGAEL 449 (626)
Q Consensus 371 ~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~~l~~G~~fGe~~ 449 (626)
...+.|..++++....+....+.+.+++|+.|+++|+.++.+|+|.+|.++++..+. |++ ..+..+++|++||+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~---~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGRE---IILGFLGPGDFFGELA 79 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcE---EEEEEecCCchhhhHH
Confidence 345667777888888888999999999999999999999999999999999997653 333 4568999999999998
Q ss_pred hhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hCCCCCCCccchhh
Q 006911 450 VDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTRRKF---RFPKRRPSPLYVPL 526 (626)
Q Consensus 450 l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l 526 (626)
++ .. .+++++++|.++|+++.+++++|.+++.+.|.+...+.....+++.+... ........++....
T Consensus 80 l~---~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~ 150 (214)
T COG0664 80 LL---GG------DPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQALERLSLLARKDVEERLARF 150 (214)
T ss_pred Hh---cC------CCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 73 11 17888999999999999999999999988899999999888887755433 23344455555444
Q ss_pred hhhhhhh
Q 006911 527 RDKVKEK 533 (626)
Q Consensus 527 ~~~~~~~ 533 (626)
.......
T Consensus 151 l~~l~~~ 157 (214)
T COG0664 151 LLNLGRR 157 (214)
T ss_pred HHHHhhc
Confidence 3333333
No 12
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.36 E-value=5.2e-12 Score=105.54 Aligned_cols=91 Identities=21% Similarity=0.303 Sum_probs=78.5
Q ss_pred ceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEec
Q 006911 393 PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEAL 472 (626)
Q Consensus 393 ~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~ 472 (626)
++.|++|++|+++|+.++++|||.+|.++++..+.+... .++..+++|++||+.+++ .+ .++..+++|.
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~--~~~~~~~~g~~~g~~~~~---~~------~~~~~~~~a~ 69 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKE--QIIFFLGPGDIFGEIELL---TG------KPSPFTVIAL 69 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEE--EEEEEEETTEEESGHHHH---HT------SBBSSEEEES
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceeccee--eeecceeeeccccceeec---CC------CccEEEEEEc
Confidence 368999999999999999999999999999987655443 356899999999999773 21 1678899999
Q ss_pred cceeeEEeCHHHHHHHHHHhHH
Q 006911 473 TNIEAFTLMADDLKIVFNEKMN 494 (626)
Q Consensus 473 ~~~~ll~l~~~~f~~ll~~~p~ 494 (626)
++|+++.|++++|.++++++|+
T Consensus 70 ~~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 70 TDSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SSEEEEEEEHHHHHHHHHHSHH
T ss_pred cCEEEEEEeHHHHHHHHHhCcC
Confidence 9999999999999999999985
No 13
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.36 E-value=6.5e-12 Score=124.42 Aligned_cols=132 Identities=12% Similarity=0.054 Sum_probs=103.5
Q ss_pred HHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCcc
Q 006911 384 LDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFS 463 (626)
Q Consensus 384 l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~ 463 (626)
...+....+.+.|++|+.|+.+|+.++++|||.+|.|+++..++++.. .++..+.+|++||+.+++ . ..
T Consensus 24 ~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e--~~~~~~~~g~~~G~~~~~---~------~~ 92 (226)
T PRK10402 24 SFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKV--SLIDFFAAPCFIGEIELI---D------KD 92 (226)
T ss_pred CHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCE--eeeeecCCCCeEEeehhh---c------CC
Confidence 345788899999999999999999999999999999999976533222 456889999999998752 2 13
Q ss_pred ceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHhCCCCCCCccchhh
Q 006911 464 KSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTRR---KFRFPKRRPSPLYVPL 526 (626)
Q Consensus 464 ~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l 526 (626)
++..+++|.++|+++.+++++|.+++.++|.+...+++.+..++.+. .......+.++|+..+
T Consensus 93 ~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rla~~ 158 (226)
T PRK10402 93 HETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLSHKNYRNIVSLTQNQSFPLENRLAAF 158 (226)
T ss_pred CCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 77889999999999999999999999999999998888777665332 2222333455555444
No 14
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.34 E-value=2.1e-11 Score=106.59 Aligned_cols=117 Identities=21% Similarity=0.275 Sum_probs=98.7
Q ss_pred ccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhh
Q 006911 375 EFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWAL 454 (626)
Q Consensus 375 ~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l 454 (626)
+|.+++++.++.++..++.+.|++|++|+++|+.++++|||.+|.++++..+.++.. ..+..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~--~~~~~~~~g~~~g~~~~~--- 75 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGRE--QILGILGPGDFFGELALL--- 75 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCce--EEEEeecCCceechhhhc---
Confidence 478999999999999999999999999999999999999999999999976533332 456899999999998762
Q ss_pred cccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHH
Q 006911 455 RDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVI 500 (626)
Q Consensus 455 ~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~ 500 (626)
. ....++..+++|.++|+++.++.+++.+.+.+.+.+....+
T Consensus 76 ~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 117 (120)
T smart00100 76 T----NSRRAASATAVALELATLLRIDFRDFLQLLQENPQLLLELL 117 (120)
T ss_pred c----CCCcccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence 1 11226777899999999999999999999999987755444
No 15
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.33 E-value=1.2e-11 Score=119.29 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=97.4
Q ss_pred CcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeE
Q 006911 399 HAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAF 478 (626)
Q Consensus 399 ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll 478 (626)
|+.|+++|+.++++|+|.+|.|+++..++++.. .++..+++|++||+.+++ .+ ...++..+++|.++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e--~~l~~~~~g~~~G~~~~~---~~----~~~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEE--ITVALLRENSVFGVLSLI---TG----HRSDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcE--eeeEEccCCCEeeeeeec---cC----CCCccceEEEEecceEEE
Confidence 789999999999999999999999975543222 467899999999998763 11 111345689999999999
Q ss_pred EeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHhCCCCCCCccchhhhhhhhhhCC
Q 006911 479 TLMADDLKIVFNEKMNQAALVIQLAWRHYTRR---KFRFPKRRPSPLYVPLRDKVKEKTP 535 (626)
Q Consensus 479 ~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~ 535 (626)
.+++++|++++.++|.+...+++...+++... .........++|+..+........+
T Consensus 72 ~i~~~~~~~l~~~~p~l~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~~ 131 (193)
T TIGR03697 72 AVPIEQVEKAIEEDPDLSMLLLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFG 131 (193)
T ss_pred EeeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999887776443 2234556666776665444444333
No 16
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.30 E-value=2.6e-11 Score=127.65 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=112.3
Q ss_pred HHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 367 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 367 ~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
.+++.++|+|+.++++.+.+|...+....|.+||.|+..|.+.+++|+|.+|.|+++..++ + .+..+..||.||
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g-~-----v~~~~~~gdlFg 79 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGG-E-----VLDRLAAGDLFG 79 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCC-e-----eeeeeccCcccc
Confidence 5789999999999999999999999999999999999999999999999999999997543 2 358999999999
Q ss_pred cchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006911 447 AELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR 509 (626)
Q Consensus 447 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~ 509 (626)
-.+++.. + +....+.|.+|+.+|.|+++.|.++++++|.+++.+...++.|+++
T Consensus 80 ~~~l~~~-------~--~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~ 133 (610)
T COG2905 80 FSSLFTE-------L--NKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRD 133 (610)
T ss_pred chhhccc-------C--CCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 9987311 1 2233677888999999999999999999999999999888888754
No 17
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.26 E-value=1.2e-11 Score=128.17 Aligned_cols=125 Identities=20% Similarity=0.316 Sum_probs=108.5
Q ss_pred HHHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCC
Q 006911 363 RELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDS 442 (626)
Q Consensus 363 ~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G 442 (626)
.+.+..+|+++|+|+++|++.+..+++.++...|..|++|+++|+.++.+|+|.+|.|.+...+.+..+. ..++.+..|
T Consensus 267 ~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~-~~lr~l~kG 345 (732)
T KOG0614|consen 267 HEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQP-QELRTLNKG 345 (732)
T ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCch-hHHhhcccc
Confidence 3456789999999999999999999999999999999999999999999999999999999776554333 567899999
Q ss_pred CeEecchhhhhhcccCccCccceeeEEEeccc-eeeEEeCHHHHHHHHHHhHHHHH
Q 006911 443 DFYGAELVDWALRDCSLFEFSKSTKTIEALTN-IEAFTLMADDLKIVFNEKMNQAA 497 (626)
Q Consensus 443 ~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~-~~ll~l~~~~f~~ll~~~p~~~~ 497 (626)
|+|||-+++ +...|++++.|..+ ++|++|+++.|.+++..-.++..
T Consensus 346 d~FGE~al~---------~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~e 392 (732)
T KOG0614|consen 346 DYFGERALL---------GEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKE 392 (732)
T ss_pred chhhHHHhh---------ccCccchhhhccCCCceEEEecHHHHHHhcccHHHhhh
Confidence 999999873 22378999999988 99999999999999887665543
No 18
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.25 E-value=6.3e-11 Score=117.65 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=105.4
Q ss_pred HHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccce
Q 006911 386 ALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKS 465 (626)
Q Consensus 386 ~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~ 465 (626)
.+....+.+.|++|++|+.+||.++++|||.+|.|+++..+++++. .++..+.+|++||+..- .++
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e--~i~~~~~~Gd~fG~~~~------------~~~ 98 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRR--QIGAFHLPGDVFGLESG------------STH 98 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcE--EEEEEecCCceecccCC------------CcC
Confidence 4566778899999999999999999999999999999976533322 45688899999996521 156
Q ss_pred eeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHhCCCCCCCccchhhhhhhh
Q 006911 466 TKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYT---RRKFRFPKRRPSPLYVPLRDKVK 531 (626)
Q Consensus 466 ~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~ 531 (626)
..+++|+++|+++.+++++|++++.++|.+...+++.+..++. ++.......+.++|+..+.....
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~ 167 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVAAFLLEMD 167 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7799999999999999999999999999999999988887764 34445556677777766544433
No 19
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.21 E-value=1.7e-10 Score=111.09 Aligned_cols=182 Identities=14% Similarity=0.200 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHc-eeeCCCccEEEecccc----hhHHHHH-HHhh--ccCCCccccCchhHHHHHHHHHHHHHHHHH
Q 006911 57 VLGFFLICIHMVIFL-SYKNPLGFVINFLIYY----SILAMAG-IILL--EKQGYPIFFDPMKYFKILLCIRYLARIISI 128 (626)
Q Consensus 57 i~~~i~F~~Di~l~f-~y~~~~~~v~~Ylk~~----D~is~lP-~~i~--~~~~~~~~~~~~~~lrl~~l~~~l~Rllr~ 128 (626)
++..++|.+|+++++ +..-. -.+|++++ |+++++| .+.. ...+........+++|+.|+ .|++|+
T Consensus 4 ~~~~~~f~~e~~l~~~~~~~~---~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~R~l~~ 76 (200)
T PF00520_consen 4 IIFDVIFILEIVLRFFALGFK---RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRL----LRLLRL 76 (200)
T ss_dssp HHHHHHHHHHHHHHHHTCCCG----GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccH---HHHHhcChhhcccccccccccccccccccccccccceEEEEEeecc----cccccc
Confidence 444566999999999 33211 12899876 9999999 3322 22221100012233333222 244444
Q ss_pred HHhHHHHHhhhhhhHHhHHHHHHHHH-HHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhccCCCceeeeeccCCcCCcccc
Q 006911 129 YSLFSKAVRSSTELSEAKWVKIAVNL-YLYLQAANVFGGLWYFMAIERVIECWTKACINHTGQHCHFSCRVNLEEDRTYI 207 (626)
Q Consensus 129 ~rl~~~~~~~~~~~~~~~~~~~~~~L-~~~~l~~H~~aC~w~~i~~~~~~~~w~~~c~~~~g~~c~~~~~~~~~~~~sWi 207 (626)
.|..+.+++....+.. . ...+.++ +.++++.|++||+++.+.....+.++ ..++-
T Consensus 77 ~~~~~~~~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~----------------------~~~~~ 132 (200)
T PF00520_consen 77 LRRFRSLRRLLRALIR-S-FPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCC----------------------DPTWD 132 (200)
T ss_dssp HHTTTSHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----------------------------SS
T ss_pred cccccccccccccccc-c-cccccccccccccccccccchhheeccccccccc----------------------ccccc
Confidence 4444433333222211 1 1123333 34456899999999988732111000 00000
Q ss_pred cccCCCCCCCCCcccccccccccccCcccCchhHHHHHHHHHHHHHHhhccCCCccccc-----chhhhHHH-HHHHHHH
Q 006911 208 NGFCPTKIRNTTIHDFGIFHGALESGIVEGTSILQKLLHCFVWGLQNLSNLGHDLQSGS-----DVWENIFV-ILVVSSG 281 (626)
Q Consensus 208 ~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~~Y~~slYwa~~TmtTvGyGDi~p~-----t~~E~i~~-i~~~i~G 281 (626)
... ...+.+..+.|..|+||++.++||.|+||+.+. +..+.++. ++..+.+
T Consensus 133 ~~~-----------------------~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 189 (200)
T PF00520_consen 133 SEN-----------------------DIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVS 189 (200)
T ss_dssp ---------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred ccc-----------------------ccccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHH
Confidence 000 012456778899999999999999999999887 88999999 5555566
Q ss_pred HHHHHHHHHHH
Q 006911 282 FLFFALLIGNM 292 (626)
Q Consensus 282 ~~~fa~iig~i 292 (626)
.++++.++|.|
T Consensus 190 ~~l~nlliavi 200 (200)
T PF00520_consen 190 ILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 68888888865
No 20
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.19 E-value=1e-10 Score=95.45 Aligned_cols=55 Identities=16% Similarity=0.333 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006911 243 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQ 297 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~ 297 (626)
.|..|+||+++|+||+||||+.|.|..+++++++.+++|..++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678999999999999999999999999999999999999999999999998875
No 21
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.18 E-value=1.6e-10 Score=124.81 Aligned_cols=113 Identities=19% Similarity=0.333 Sum_probs=98.9
Q ss_pred HHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 367 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 367 ~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
.++++++++|++++++.++.|+..++.+.|++||+|+++|+.++.+|+|.+|.|+++..+++.+ .++..+++|++||
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge---~~l~~l~~Gd~fG 83 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEES---RPEFLLKRYDYFG 83 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCc---EEEEEeCCCCEee
Confidence 4568899999999999999999999999999999999999999999999999999997654433 4668899999999
Q ss_pred cchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhH
Q 006911 447 AELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKM 493 (626)
Q Consensus 447 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p 493 (626)
+. + .+ .++.++++|.++|+++.|+++.|+.+...++
T Consensus 84 ~~-l----~~------~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 84 YG-L----SG------SVHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred hh-h----CC------CCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 75 3 11 2678899999999999999999998887755
No 22
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=4.1e-11 Score=119.40 Aligned_cols=117 Identities=14% Similarity=0.163 Sum_probs=101.1
Q ss_pred HHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 367 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 367 ~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
.+.+++.-+|.+++++.+.++...|.++.+..|+.|+++|+.++.+|+|.+|.+.++..+ .-+..+++|..||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~-------~~v~~~~~g~sFG 193 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNG-------TYVTTYSPGGSFG 193 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECC-------eEEeeeCCCCchh
Confidence 456778889999999999999999999999999999999999999999999999999742 1347899999999
Q ss_pred cchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHH
Q 006911 447 AELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALV 499 (626)
Q Consensus 447 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~ 499 (626)
|.+|.++ +||.+|+.|.+++.+|.|++..|..++-.+-.-.+++
T Consensus 194 ElALmyn---------~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkM 237 (368)
T KOG1113|consen 194 ELALMYN---------PPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKM 237 (368)
T ss_pred hhHhhhC---------CCcccceeeccccceEEEeeceeEEEeeccchhhhhh
Confidence 9998432 3999999999999999999999988876654443333
No 23
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.16 E-value=2.3e-11 Score=126.15 Aligned_cols=115 Identities=18% Similarity=0.335 Sum_probs=102.9
Q ss_pred HHHHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccC
Q 006911 362 KRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLED 441 (626)
Q Consensus 362 ~~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~ 441 (626)
..++-++.+.+..++++|....+.+++..|.+..|++|++|++|||+++++|.+.+|+++|... | ..+..+++
T Consensus 148 ~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~--g-----~ll~~m~~ 220 (732)
T KOG0614|consen 148 AKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSRE--G-----KLLGKMGA 220 (732)
T ss_pred HHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeC--C-----eeeeccCC
Confidence 3455677888889999999999999999999999999999999999999999999999999863 2 34589999
Q ss_pred CCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHh
Q 006911 442 SDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEK 492 (626)
Q Consensus 442 G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~ 492 (626)
|..|||.+++++. +|+++|+|+++|.+|.|+|+.|+.++...
T Consensus 221 gtvFGELAILync---------tRtAsV~alt~~~lWaidR~vFq~IM~~t 262 (732)
T KOG0614|consen 221 GTVFGELAILYNC---------TRTASVRALTDVRLWAIDREVFQAIMMRT 262 (732)
T ss_pred chhhhHHHHHhCC---------cchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999986543 89999999999999999999999998773
No 24
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.16 E-value=1.6e-11 Score=121.66 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006911 245 LHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQI 294 (626)
Q Consensus 245 ~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~ 294 (626)
-.|||||++|||||||||..|.|...+++..++.+.|++-.|.-+-.|.+
T Consensus 395 PdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVs 444 (507)
T KOG1545|consen 395 PDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVS 444 (507)
T ss_pred cccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEe
Confidence 34899999999999999999999999999999999999888776655443
No 25
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.15 E-value=3.3e-10 Score=110.08 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=88.6
Q ss_pred hccceeeCCCcEEEccCC--ccCEEEEEEEceEEEEEecC-CccccceeeeeccCCCeEecchhhhhhcccCccCcccee
Q 006911 390 CVKPTFFTEHAHIIREGD--PIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKST 466 (626)
Q Consensus 390 ~l~~~~~~~ge~I~~~G~--~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~ 466 (626)
.++...|++|++|+++|| .++++|+|.+|.|+++..+. |++ .++..+.+|++||+.+++ . .+++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e---~~l~~~~~Gd~~G~~~~~---------~-~~~~ 71 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNA---LTLRYVRPGEYFGEEALA---------G-AERA 71 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCE---EEEEEecCCCeechHHhc---------C-CCCC
Confidence 467789999999999999 77999999999999997653 443 567899999999997541 1 2567
Q ss_pred eEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHhCCCCCCCccchhhhhhhh
Q 006911 467 KTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYT---RRKFRFPKRRPSPLYVPLRDKVK 531 (626)
Q Consensus 467 ~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~ 531 (626)
.+++|.++|+++.|++++| +|.+...+++...+++. ++.........++|...+.....
T Consensus 72 ~~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rla~~Ll~l~ 133 (202)
T PRK13918 72 YFAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLARAYESIYRLVGQRLKNRIAAALLELS 133 (202)
T ss_pred ceEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 7999999999999999987 45555555555444432 23333444555666655443333
No 26
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.10 E-value=5.9e-10 Score=116.52 Aligned_cols=90 Identities=17% Similarity=0.231 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhchHHHHhhcc
Q 006911 239 SILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKP 318 (626)
Q Consensus 239 ~~~~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~ 318 (626)
+.+.-|..|+||.+.|+|||||||.+|.|...++.+.++.++|..+||.--|.+++=++-.-+++.. =++|-+
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~R-------QKHf~r 337 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHR-------QKHFNR 337 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHH-------HHHHHh
Confidence 4567899999999999999999999999999999999999999999999999888877654332221 135667
Q ss_pred cCCCCHHHHHHHHHHHH
Q 006911 319 FQNLSANLQQEMKKYKP 335 (626)
Q Consensus 319 ~~~l~~~l~~rv~~y~~ 335 (626)
.++.-..|.+-.-+||-
T Consensus 338 rr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYYA 354 (654)
T ss_pred hcchHHHHHHHHHHHHh
Confidence 77877778777766653
No 27
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.87 E-value=3.7e-09 Score=105.67 Aligned_cols=116 Identities=14% Similarity=0.190 Sum_probs=102.4
Q ss_pred HHHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCC
Q 006911 363 RELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDS 442 (626)
Q Consensus 363 ~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G 442 (626)
..+|.++|+++|++..+...+...++..+.++.|.+|+.|..+|+.++.+|+|.+|+|.+....++ +.+ .++.|
T Consensus 235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~-----v~v-kl~~~ 308 (368)
T KOG1113|consen 235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG-----VEV-KLKKG 308 (368)
T ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC-----eEE-Eechh
Confidence 456788999999999999999999999999999999999999999999999999999998854433 233 89999
Q ss_pred CeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhH
Q 006911 443 DFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKM 493 (626)
Q Consensus 443 ~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p 493 (626)
|+|||.+++.. .||.++|.|.+...|..++++.|+.|+.--.
T Consensus 309 dyfge~al~~~---------~pr~Atv~a~~~~kc~~~dk~~ferllgpc~ 350 (368)
T KOG1113|consen 309 DYFGELALLKN---------LPRAATVVAKGRLKCAKLDKPRFERLLGPCQ 350 (368)
T ss_pred hhcchHHHHhh---------chhhceeeccCCceeeeeChHHHHHHhhHHH
Confidence 99999988422 2899999999999999999999999987644
No 28
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.51 E-value=9e-08 Score=100.26 Aligned_cols=62 Identities=13% Similarity=0.245 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006911 242 QKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRL 303 (626)
Q Consensus 242 ~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~ 303 (626)
-.|..|+|+-++||+||||||+...|...+.|.++..+.|..+||--+..+..++.+.++-.
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyg 348 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYG 348 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccC
Confidence 56999999999999999999999999999999999999999999999999999998865433
No 29
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.44 E-value=3.1e-06 Score=89.98 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006911 243 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYL 296 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~ 296 (626)
.+..|+||+++|+|||||||+.|.|...++++++++++|..+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999999999999998887644
No 30
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.37 E-value=1.2e-08 Score=102.32 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 006911 242 QKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLI----GNMQIYLQS 298 (626)
Q Consensus 242 ~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~ii----g~i~~i~~~ 298 (626)
+.--.+||+.++||||.||||.+|.|...++|..++.+.|+++.|.-+ .+.+.|..+
T Consensus 355 TsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 355 TSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred ccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhh
Confidence 334468999999999999999999999999999999999999888744 555555544
No 31
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.16 E-value=8.2e-05 Score=77.34 Aligned_cols=92 Identities=10% Similarity=-0.000 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhchHHHHhhccc
Q 006911 240 ILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPF 319 (626)
Q Consensus 240 ~~~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~ 319 (626)
....|+.|++....|..++||||++|.|.-.+..++++-++|++..|.+++-|+- +-+..+--..+++||-+
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisR--------KLeLt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIAR--------KLELTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 4467999999999999999999999999999999999999999999998888774 34444445678999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 006911 320 QNLSANLQQEMKKYKPYIRR 339 (626)
Q Consensus 320 ~~l~~~l~~rv~~y~~~~~~ 339 (626)
.++.+++++-..+=++..|.
T Consensus 356 tqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999888887777777765
No 32
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.02 E-value=7.4e-06 Score=90.74 Aligned_cols=115 Identities=15% Similarity=0.097 Sum_probs=96.3
Q ss_pred HHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEe-cCCccccceeeeeccCCCeEecchhhhhhcccCccC
Q 006911 383 TLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSF-NDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFE 461 (626)
Q Consensus 383 ~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~ 461 (626)
++..+-..+....+.+|+.++++||..+++|+|.+|.++-... .+++. ..+..++.||.+|+...+ ..
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~---~i~~EygrGd~iG~~E~l---t~----- 568 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKK---EIVGEYGRGDLIGEVEML---TK----- 568 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccc---hhhhhccCcceeehhHHh---hc-----
Confidence 5666667778889999999999999999999999999997643 33433 235889999999998763 22
Q ss_pred ccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006911 462 FSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR 509 (626)
Q Consensus 462 ~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~ 509 (626)
.+|..|+.|+.++++..||..-|..+..+||.+...+.+.+.++...
T Consensus 569 -~~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~~g 615 (1158)
T KOG2968|consen 569 -QPRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKILG 615 (1158)
T ss_pred -CCccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 27888999999999999999999999999999999888888777633
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.86 E-value=6.9e-05 Score=77.76 Aligned_cols=56 Identities=13% Similarity=0.253 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhhccCCCc--ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006911 242 QKLLHCFVWGLQNLSNLGHDL--QSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQ 297 (626)
Q Consensus 242 ~~Y~~slYwa~~TmtTvGyGD--i~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~ 297 (626)
..+..+|+||+.|+||||||. ++|....-.+.+++-+++|.++.|+++|-+-+=++
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~s 140 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFS 140 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999999998 67777888888889999999999999988775443
No 34
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.65 E-value=5.5e-05 Score=82.09 Aligned_cols=59 Identities=12% Similarity=0.268 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006911 243 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTV 301 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~ 301 (626)
-+..|+|+|++++||+|||++.|.|...++++|+..++|.-++..+++.++..+...-.
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~ 173 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR 173 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999998887543
No 35
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.52 E-value=0.00055 Score=76.44 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=94.0
Q ss_pred HHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecc-hhhhhhcccCccCccce
Q 006911 387 LCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE-LVDWALRDCSLFEFSKS 465 (626)
Q Consensus 387 L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~-~l~~~l~~~~~~~~~~~ 465 (626)
|+.+++...+..|++|++.|+..+.+|.+.+|.+.++..++..+. ..+..+.+|+.|-.. +++-.+ +......+
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~--~llk~V~~G~~~tSllSiLd~l---~~~ps~~~ 185 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKE--YLLKTVPPGGSFTSLLSILDSL---PGFPSLSR 185 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCce--eeEeeccCCCchHhHHHHHHhc---cCCCcccc
Confidence 347788889999999999999999999999999999976644433 457889999877654 342112 11111245
Q ss_pred eeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006911 466 TKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR 509 (626)
Q Consensus 466 ~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~ 509 (626)
+..++|.++|.+..++.+.|..+..++|+-...+++....|+++
T Consensus 186 ~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTRLq~ 229 (1158)
T KOG2968|consen 186 TIAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTRLQR 229 (1158)
T ss_pred eeeeeeecCceEEEeccchhhhhhccChHHHHHHHHHHHHHHHH
Confidence 66799999999999999999999999999999999998888865
No 36
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.20 E-value=0.013 Score=52.68 Aligned_cols=123 Identities=16% Similarity=0.187 Sum_probs=90.0
Q ss_pred cCcHHHHHHHHhh-ccceeeCCCcEEEccCC-ccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhc
Q 006911 378 MLKEETLDALCDC-VKPTFFTEHAHIIREGD-PIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALR 455 (626)
Q Consensus 378 ~ls~~~l~~L~~~-l~~~~~~~ge~I~~~G~-~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~ 455 (626)
+.|....+.|+.. .+...+.+|+.-..||. ..+.+-++++|.+++... |+ .+..+.|-++.....+. +++
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~-----fLH~I~p~qFlDSPEW~-s~~ 85 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GR-----FLHYIYPYQFLDSPEWE-SLR 85 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CE-----eeEeecccccccChhhh-ccc
Confidence 4677778888877 66788999999998885 568999999999999863 22 34566666666554431 121
Q ss_pred ccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006911 456 DCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTRRK 511 (626)
Q Consensus 456 ~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~~~ 511 (626)
.+ ....-..|++|.++|..+..+|+.+..++.+.|-++..+-....+...++.
T Consensus 86 ~s---~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~~KL 138 (153)
T PF04831_consen 86 PS---EDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGKDIAEKL 138 (153)
T ss_pred cC---CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 11 112456699999999999999999999999999887776666555554443
No 37
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.18 E-value=0.0096 Score=57.01 Aligned_cols=108 Identities=10% Similarity=0.068 Sum_probs=78.8
Q ss_pred HHHHHHhhccceeeCCCcEE-EccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccC
Q 006911 383 TLDALCDCVKPTFFTEHAHI-IREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFE 461 (626)
Q Consensus 383 ~l~~L~~~l~~~~~~~ge~I-~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~ 461 (626)
..+.|....++..+.+|..+ .-.....+.++++.+|.|.+.. .++ ..+....+..+||-... +.+
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr-~d~-----ll~~t~~aP~IlGl~~~---~~~----- 79 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR-EEN-----VLIGITQAPYIMGLADG---LMK----- 79 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe-cCC-----eEEEeccCCeEeecccc---cCC-----
Confidence 45566677788899999997 5444444789999999999954 332 34567788889997542 111
Q ss_pred ccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 006911 462 FSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWR 505 (626)
Q Consensus 462 ~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~ 505 (626)
....+..+|.++|+++.++.++|.++++++.-|.....-.++.
T Consensus 80 -~~~~~~l~ae~~c~~~~i~~~~~~~iie~~~LW~~~~~~l~~~ 122 (207)
T PRK11832 80 -NDIPYKLISEGNCTGYHLPAKQTITLIEQNQLWRDAFYWLAWQ 122 (207)
T ss_pred -CCceEEEEEcCccEEEEeeHHHHHHHHHHhchHHHHHHHHHHH
Confidence 1234579999999999999999999999988776655544443
No 38
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=96.81 E-value=0.0004 Score=55.31 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=27.6
Q ss_pred CceeecCCCCcc-chhHHHHHHHHHhhccceeeeeeecCCCceeeecc
Q 006911 3 DMLTLLRQWPYF-DWMKIIFSVIEIQVEALYFYAPVINDERKCFDMHQ 49 (626)
Q Consensus 3 ~~~~i~P~s~~~-~W~~~~~~~~~~~~~pl~~~~~~~~~~~~~f~~~~ 49 (626)
..+||+|.|+|+ +||.++++++ ++..+..|+.++|..|+
T Consensus 35 ~~~IIHP~S~fR~~WD~~m~~~~--------~~~~~~iP~~isF~~d~ 74 (77)
T PF08412_consen 35 GPWIIHPFSKFRFYWDLIMLILL--------LYNLIIIPFRISFFSDE 74 (77)
T ss_pred CCeEEcCCccHHHHHHHHHHHHH--------HHHHHHHhhhheEecCc
Confidence 357999999999 9998884333 22334466778887664
No 39
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.002 Score=64.42 Aligned_cols=60 Identities=8% Similarity=0.156 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhccCCCcccccch-------hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006911 243 KLLHCFVWGLQNLSNLGHDLQSGSDV-------WE-NIFVILVVSSGFLFFALLIGNMQIYLQSRTVR 302 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGDi~p~t~-------~E-~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~ 302 (626)
.|..|+|+++.|+||+|+||.++.-. .+ +.++.+..++|..+++-.++-+.-.+..++..
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~ 253 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAE 253 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 47889999999999999999877433 33 35667778889988888888887777665543
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.36 E-value=0.00066 Score=67.76 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006911 243 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQI 294 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~ 294 (626)
+..-|||||.+.+||+|||-.+|.|+..++|+|+..++|+-+--..+..+++
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gE 131 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGE 131 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHH
Confidence 5677999999999999999999999999999999999998766555555553
No 41
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.28 E-value=0.014 Score=59.88 Aligned_cols=56 Identities=11% Similarity=0.251 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhccCCCcccc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006911 243 KLLHCFVWGLQNLSNLGHDLQSG--SDVWENIFVILVVSSGFLFFALLIGNMQIYLQS 298 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGDi~p--~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~ 298 (626)
....+|-||+-|=||+|||-=.+ .=+.-.+..++-+++|+++-|+++|.+-+=++.
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678899999999999996332 223344555666788999999999887665544
No 42
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.90 E-value=0.024 Score=61.62 Aligned_cols=110 Identities=11% Similarity=0.202 Sum_probs=87.1
Q ss_pred HHHHHhhccccccCcHHHHHHHHhhccceee-CCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCe
Q 006911 366 CWHLLKKVHEFRMLKEETLDALCDCVKPTFF-TEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDF 444 (626)
Q Consensus 366 ~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~-~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~ 444 (626)
..++..+.|-|.+++-...++|+..|..... ..|.+|+..|+.-+..+.|++|+|++..++|.. ..+.-|+.
T Consensus 279 LLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~-------e~l~mGnS 351 (1283)
T KOG3542|consen 279 LLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR-------EELKMGNS 351 (1283)
T ss_pred HHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce-------EEeecccc
Confidence 3578889999999999999999999876654 689999999999999999999999999988654 35777999
Q ss_pred EecchhhhhhcccCccCccceeeEE-EeccceeeEEeCHHHHHHHHHH
Q 006911 445 YGAELVDWALRDCSLFEFSKSTKTI-EALTNIEAFTLMADDLKIVFNE 491 (626)
Q Consensus 445 fGe~~l~~~l~~~~~~~~~~~~~tv-~A~~~~~ll~l~~~~f~~ll~~ 491 (626)
||...- .+.+. ..... .-+.||+..+|...|+-.++..
T Consensus 352 FG~~PT---~dkqy------m~G~mRTkVDDCqFVciaqqDycrIln~ 390 (1283)
T KOG3542|consen 352 FGAEPT---PDKQY------MIGEMRTKVDDCQFVCIAQQDYCRILNT 390 (1283)
T ss_pred cCCCCC---cchhh------hhhhhheecccceEEEeehhhHHHHHHH
Confidence 997532 11100 00112 3468999999999999999987
No 43
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.16 E-value=0.0038 Score=67.62 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhhccCCCcccccchhhh--------HHHHHHHHHHHHHHHHHH
Q 006911 242 QKLLHCFVWGLQNLSNLGHDLQSGSDVWEN--------IFVILVVSSGFLFFALLI 289 (626)
Q Consensus 242 ~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~--------i~~i~~~i~G~~~fa~ii 289 (626)
--|+.|+||+++|+||||+||+.|.+...+ ....++.++|...++.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 458899999999999999999999998866 578888888888877776
No 44
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.53 E-value=0.31 Score=55.72 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHc---eeeCCCccEEEeccc-c---hhHHHHH
Q 006911 57 VLGFFLICIHMVIFL---SYKNPLGFVINFLIY-Y---SILAMAG 94 (626)
Q Consensus 57 i~~~i~F~~Di~l~f---~y~~~~~~v~~Ylk~-~---D~is~lP 94 (626)
.+...+|++++.++- +.+- |+. .|+++ | |.+-++-
T Consensus 1163 yIFtaIfV~Em~lKVVALGl~f--ge~-aYl~ssWN~LDgflv~v 1204 (1956)
T KOG2302|consen 1163 YIFTAIFVVEMTLKVVALGLYF--GEQ-AYLRSSWNVLDGFLVAV 1204 (1956)
T ss_pred hHHHHHHHHHHHHHHHhhhhcc--chH-HHHHHHHHhhhHHHHHH
Confidence 334556999999887 3211 111 78864 6 6655543
No 45
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=91.78 E-value=0.24 Score=54.21 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=72.9
Q ss_pred HHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 368 HLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 368 ~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
..|.....|.+|-..-+..++...+..+++...++++.|+.+...|++++|.|-+.. ..+-|-.+||-
T Consensus 37 ~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g------------qi~mp~~~fgk 104 (1283)
T KOG3542|consen 37 EQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG------------QIYMPYGCFGK 104 (1283)
T ss_pred HHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec------------ceecCcccccc
Confidence 467778889999999999999999999999999999999999999999999987753 24556677886
Q ss_pred chhhhhhcccCccCccceeeEEEeccceeeEEeC
Q 006911 448 ELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLM 481 (626)
Q Consensus 448 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~ 481 (626)
-. . ..|+.++-.++++++++++
T Consensus 105 r~---------g---~~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 105 RT---------G---QNRTHNCLLLQESEMIVID 126 (1283)
T ss_pred cc---------c---cccccceeeecccceeeee
Confidence 41 1 1466677888888888774
No 46
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=91.71 E-value=0.3 Score=52.19 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHH
Q 006911 245 LHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLF 284 (626)
Q Consensus 245 ~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~ 284 (626)
..|+|+.++|++||||||-.|.-..-.++.+++.-++.++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ 258 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGL 258 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhc
Confidence 3588999999999999999998766666555544444333
No 47
>COG4709 Predicted membrane protein [Function unknown]
Probab=87.80 E-value=3.1 Score=38.92 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=59.2
Q ss_pred hHHHHhhcccCCCCHHHHHHHHHHHHHHHHhc--CCCCHHHHHhhC--cHHHHHHHHHHHHHHHHhhccccccCcHHHHH
Q 006911 310 PREIEEWKPFQNLSANLQQEMKKYKPYIRRKT--NHIDIENLLNNI--PKELGKKIKRELCWHLLKKVHEFRMLKEETLD 385 (626)
Q Consensus 310 ~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~--~~~~~~~il~~L--p~~Lr~ei~~~~~~~~L~~~~~F~~ls~~~l~ 385 (626)
++++++|++ ++|++.++.+..||+-++.+. .|.+|+++..+| |.++-.|+..+.-.+-.+.-|-+++.+...+.
T Consensus 7 L~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~aii~ 84 (195)
T COG4709 7 LNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAIIA 84 (195)
T ss_pred HHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHHHH
Confidence 788889885 899999999999998877653 577899999998 77888888877766777666777776654443
Q ss_pred H
Q 006911 386 A 386 (626)
Q Consensus 386 ~ 386 (626)
.
T Consensus 85 ~ 85 (195)
T COG4709 85 L 85 (195)
T ss_pred H
Confidence 3
No 48
>PLN03223 Polycystin cation channel protein; Provisional
Probab=84.54 E-value=60 Score=39.76 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006911 273 FVILVVSSGFLFFALLIGNMQIYLQSR 299 (626)
Q Consensus 273 ~~i~~~i~G~~~fa~iig~i~~i~~~~ 299 (626)
|..+++++..++.-++|+-|..-++..
T Consensus 1399 FfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1399 FYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 49
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=84.52 E-value=5.1 Score=37.94 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=45.5
Q ss_pred hHHHHhhcccCCCCHHHHHHHHHHHHHHHHh--cCCCCHHHHHhhC--cHHHHHHHHHHHH
Q 006911 310 PREIEEWKPFQNLSANLQQEMKKYKPYIRRK--TNHIDIENLLNNI--PKELGKKIKRELC 366 (626)
Q Consensus 310 ~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~ei~~~~~ 366 (626)
+++++++++ ++|++-++++.+||+-.... .+|.+|+++.++| |.++-+++..+..
T Consensus 7 L~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 7 LNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYS 65 (181)
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 788899996 69999999999999988775 4578899999998 7777777776543
No 50
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=72.72 E-value=6 Score=30.48 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=33.1
Q ss_pred eeeCCCcEEEccCCccC-EEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 394 TFFTEHAHIIREGDPID-ELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 394 ~~~~~ge~I~~~G~~~~-~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
..++||+..-..-.... ++++|++|++.+.. ++ +. ..+.+||.+=-
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~~-~~------~~l~~Gd~~~i 49 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-DG-ER------VELKPGDAIYI 49 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE-TT-EE------EEEETTEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE-cc-EE------eEccCCEEEEE
Confidence 46788887655555555 89999999999983 33 22 57899997653
No 51
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=72.34 E-value=3.5 Score=37.14 Aligned_cols=75 Identities=11% Similarity=0.059 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhchHHHHhhccc
Q 006911 240 ILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPF 319 (626)
Q Consensus 240 ~~~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~ 319 (626)
.......++++.+.+++. +-++..|.+...|++.+++.+++.++.++.-+++++.+..- .++..++.+++..+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~-----~~~~~i~sl~dL~~~ 114 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP-----KYEPPIDSLEDLANS 114 (148)
T ss_dssp HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----HHTSS-SSHHHHHTH
T ss_pred CcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CcCCCCCCHHHHHHC
Confidence 445677788888888776 44578999999999999999999999999999999988763 234446666666655
Q ss_pred C
Q 006911 320 Q 320 (626)
Q Consensus 320 ~ 320 (626)
.
T Consensus 115 ~ 115 (148)
T PF00060_consen 115 G 115 (148)
T ss_dssp S
T ss_pred C
Confidence 5
No 52
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=69.20 E-value=24 Score=31.20 Aligned_cols=69 Identities=7% Similarity=0.040 Sum_probs=41.8
Q ss_pred cceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEe
Q 006911 392 KPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEA 471 (626)
Q Consensus 392 ~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A 471 (626)
....+.||..+-..-....++++|++|++++...+++++ ..+.+||.+--.+ .....+++
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~------~~L~aGD~i~~~~--------------~~~H~~~N 97 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEV------HPIRPGTMYALDK--------------HDRHYLRA 97 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEE------EEeCCCeEEEECC--------------CCcEEEEc
Confidence 345678887553322222479999999999873222333 5799999986432 11124444
Q ss_pred ccceeeEEe
Q 006911 472 LTNIEAFTL 480 (626)
Q Consensus 472 ~~~~~ll~l 480 (626)
.++++++.+
T Consensus 98 ~e~~~~l~v 106 (125)
T PRK13290 98 GEDMRLVCV 106 (125)
T ss_pred CCCEEEEEE
Confidence 577777665
No 53
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=63.17 E-value=2.9e+02 Score=32.89 Aligned_cols=43 Identities=7% Similarity=0.058 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHhhCcHHHHHHHHHHHHH
Q 006911 320 QNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCW 367 (626)
Q Consensus 320 ~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~ 367 (626)
.++|+.|+.+|..++.... ++.-.+++.+++....++...+..
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~-----l~~~~lF~~~s~~~l~~L~~~~~~ 399 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPV-----VEKVYLFKGVSREILLLLVTKMKA 399 (823)
T ss_pred HHcCHHHHHHHHHHHHHHH-----HhhCcchhcCCHHHHHHHHHhhhe
Confidence 3689999999987754322 223357788888888887777643
No 54
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=60.92 E-value=1.6e+02 Score=34.20 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=45.6
Q ss_pred hccCCCcccccchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHhchHHHHhhcccCCCCHHHHH
Q 006911 256 SNLGHDLQSGSDVW------ENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRL-KEMTVKPREIEEWKPFQNLSANLQQ 328 (626)
Q Consensus 256 tTvGyGDi~p~t~~------E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~-~~~~~~~~~i~~~m~~~~l~~~l~~ 328 (626)
.|+|+||....... -.+|.+++.++..+++=.+|+.|++...+..... .+++.+...+- .|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~i-L~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAATI-LMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH-HHHHhcCCHHHHH
Confidence 67999997544332 3455666666666777777777777777765544 55554444332 3445677776666
Q ss_pred H
Q 006911 329 E 329 (626)
Q Consensus 329 r 329 (626)
+
T Consensus 680 ~ 680 (782)
T KOG3676|consen 680 R 680 (782)
T ss_pred H
Confidence 5
No 55
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=57.93 E-value=13 Score=29.36 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=23.9
Q ss_pred CEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 410 DELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 410 ~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
+++.+|++|.|.+...+ +.. ..+++||.|-
T Consensus 26 ~E~~~vleG~v~it~~~-G~~------~~~~aGD~~~ 55 (74)
T PF05899_consen 26 DEFFYVLEGEVTITDED-GET------VTFKAGDAFF 55 (74)
T ss_dssp EEEEEEEEEEEEEEETT-TEE------EEEETTEEEE
T ss_pred CEEEEEEEeEEEEEECC-CCE------EEEcCCcEEE
Confidence 78889999999998753 332 5799999875
No 56
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=57.47 E-value=19 Score=30.92 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhc----------CCCCHHHHHhhCcHHHHHHHHHH
Q 006911 321 NLSANLQQEMKKYKPYIRRKT----------NHIDIENLLNNIPKELGKKIKRE 364 (626)
Q Consensus 321 ~l~~~l~~rv~~y~~~~~~~~----------~~~~~~~il~~Lp~~Lr~ei~~~ 364 (626)
-+|+++|..|...+.-.-... ...+...++..||+.||.+|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 589999999999987654321 22446789999999999999765
No 57
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=55.44 E-value=40 Score=25.15 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=23.7
Q ss_pred hHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHhchHHHHhhcc
Q 006911 271 NIFVI---LVVSSGFLFFALLIGNMQIYLQSRTVR---LKEMTVKPREIEEWKP 318 (626)
Q Consensus 271 ~i~~i---~~~i~G~~~fa~iig~i~~i~~~~~~~---~~~~~~~~~~i~~~m~ 318 (626)
.+|.+ .+.+++++.|+. -+-.++.+.+.+ ....++|+|.+-+.+.
T Consensus 6 ~Iy~~~Vi~l~vl~~~~Ftl---~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 6 LIYYILVIILIVLFGASFTL---FIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 44444 333333444443 345555554333 2357888888877654
No 58
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=52.78 E-value=3.5e+02 Score=29.69 Aligned_cols=83 Identities=14% Similarity=0.301 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHhhCcHHHHHHHHHHH-----HHHHHhhccccccCcHHHHHHHHhhccceeeC-----
Q 006911 328 QEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKREL-----CWHLLKKVHEFRMLKEETLDALCDCVKPTFFT----- 397 (626)
Q Consensus 328 ~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~-----~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~----- 397 (626)
+-++.|++|+ +.|..|+.++..-. +.+....-...+.||+....+++..+....++
T Consensus 250 DGiK~YM~~R--------------kV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF 315 (536)
T KOG0500|consen 250 DGIKQYMRYR--------------KVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIF 315 (536)
T ss_pred HHHHHHHHHh--------------cccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHH
Confidence 4577888776 38899998886543 22333444556678888777777665443333
Q ss_pred --------------CCcEEEccCCccCEEEEEEEceEE--EEEecCCc
Q 006911 398 --------------EHAHIIREGDPIDELIFVMQGNLW--TYSFNDLT 429 (626)
Q Consensus 398 --------------~ge~I~~~G~~~~~lyfI~~G~v~--v~~~~~~~ 429 (626)
-...++.+|| |+..+|.+- .+.-+.|+
T Consensus 316 ~~ce~~lL~elVLklk~qvfSPgD-----yICrKGdvgkEMyIVk~G~ 358 (536)
T KOG0500|consen 316 QDCEAGLLVELVLKLKPQVFSPGD-----YICRKGDVGKEMYIVKEGK 358 (536)
T ss_pred HhcchhHHHHHHHHhcceeeCCCC-----eEEecCcccceEEEEEccE
Confidence 3556777777 788999875 44333443
No 59
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=52.70 E-value=1.7e+02 Score=26.93 Aligned_cols=52 Identities=12% Similarity=-0.001 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHHHHHhhccCCCcccccchhh-----hHHHHHHHHHHHHHHHHHH
Q 006911 238 TSILQKLLHCFVWGLQNLSNLGHDLQSGSDVWE-----NIFVILVVSSGFLFFALLI 289 (626)
Q Consensus 238 ~~~~~~Y~~slYwa~~TmtTvGyGDi~p~t~~E-----~i~~i~~~i~G~~~fa~ii 289 (626)
.........++-.|+.++...--|+--+..... ...+.+..+.-.++.++++
T Consensus 136 ~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 192 (200)
T PF00520_consen 136 DIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILL 192 (200)
T ss_dssp -SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHH
Confidence 344455666666777666665555544444443 3344444444444444433
No 60
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=49.04 E-value=44 Score=30.82 Aligned_cols=57 Identities=5% Similarity=0.139 Sum_probs=38.3
Q ss_pred cCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHH
Q 006911 409 IDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMAD 483 (626)
Q Consensus 409 ~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~ 483 (626)
.++++++++|.+.+...++++. ....+++||+|=--. .-..+-++.++|.++++.+.
T Consensus 48 tdE~FyqleG~~~l~v~d~g~~----~~v~L~eGd~flvP~--------------gvpHsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 48 GEEFFYQLKGEMYLKVTEEGKR----EDVPIREGDIFLLPP--------------HVPHSPQRPAGSIGLVIERK 104 (159)
T ss_pred CceEEEEEcceEEEEEEcCCcE----EEEEECCCCEEEeCC--------------CCCcccccCCCcEEEEEEeC
Confidence 6899999999999987665532 125799999985431 01113444577778777654
No 61
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=45.32 E-value=6.2e+02 Score=30.47 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=21.5
Q ss_pred hhccCCCcc-----cccchhhhHHHHHHHHHHHHHH
Q 006911 255 LSNLGHDLQ-----SGSDVWENIFVILVVSSGFLFF 285 (626)
Q Consensus 255 mtTvGyGDi-----~p~t~~E~i~~i~~~i~G~~~f 285 (626)
+|--|+-|| .+.+.+..+|-|+.+++|.++.
T Consensus 346 itlegwvdimyyvmdahsfynfiyfilliivgsffm 381 (1956)
T KOG2302|consen 346 ITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFM 381 (1956)
T ss_pred eeehhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344455554 4567778888999999987654
No 62
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=43.86 E-value=50 Score=29.10 Aligned_cols=50 Identities=12% Similarity=0.030 Sum_probs=35.5
Q ss_pred hhccceeeCCCcEE-EccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 389 DCVKPTFFTEHAHI-IREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 389 ~~l~~~~~~~ge~I-~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
...+...++||+-+ .+.-...+++|+|++|...+... ++. ..+++||++=
T Consensus 36 ~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~~------~~v~~gd~~~ 86 (127)
T COG0662 36 YSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GEE------VEVKAGDSVY 86 (127)
T ss_pred EEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CEE------EEecCCCEEE
Confidence 34556678888885 44444478999999999999874 322 4688888764
No 63
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=41.20 E-value=1.4e+02 Score=34.70 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=33.3
Q ss_pred hCcHHHHHHHHHHHHHHHHh-----hccccccCcHHHHHHHHhhcc
Q 006911 352 NIPKELGKKIKRELCWHLLK-----KVHEFRMLKEETLDALCDCVK 392 (626)
Q Consensus 352 ~Lp~~Lr~ei~~~~~~~~L~-----~~~~F~~ls~~~l~~L~~~l~ 392 (626)
.||+.||+.|..+...++.. +-.++++||++..+.|+.++-
T Consensus 372 ~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~ 417 (727)
T KOG0498|consen 372 QLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLC 417 (727)
T ss_pred cCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHh
Confidence 49999999999988777655 346788999998888887763
No 64
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=39.87 E-value=1.3e+02 Score=32.10 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006911 240 ILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRT 300 (626)
Q Consensus 240 ~~~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~ 300 (626)
..--|+.+|-+++..+.+++-++....-..-..+++++.+++.+.|-|.|.+++..++--+
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ 157 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSN 157 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4457999999999999999877653222233677777777788888888888877665433
No 65
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=39.58 E-value=59 Score=28.63 Aligned_cols=50 Identities=20% Similarity=0.122 Sum_probs=38.6
Q ss_pred ccceeeCCCcEEEccCCc-cCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecc
Q 006911 391 VKPTFFTEHAHIIREGDP-IDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 448 (626)
Q Consensus 391 l~~~~~~~ge~I~~~G~~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 448 (626)
+....+.||+.+-.--.+ .....+|++|++++... +.. ..+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~~------~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GEK------KELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CCc------eEecCCCEEEEC
Confidence 345668899888776665 67899999999999874 332 579999998865
No 66
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=37.97 E-value=2.4e+02 Score=32.88 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhccCCCccccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006911 245 LHCFVWGLQNLSNLGHDLQSGS-DVWENIFVILVVSSGFLFFALLIGNMQIYLQS 298 (626)
Q Consensus 245 ~~slYwa~~TmtTvGyGDi~p~-t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~ 298 (626)
..+++||+-+++-++--+++.. ...|.+..++.-+..+++.-.+++-+.+++.+
T Consensus 555 ~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnn 609 (822)
T KOG3609|consen 555 SKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSN 609 (822)
T ss_pred HHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHh
Confidence 4689999987765544333221 22333333333333333333344444444444
No 67
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=37.97 E-value=1.8e+02 Score=27.90 Aligned_cols=58 Identities=19% Similarity=0.336 Sum_probs=40.5
Q ss_pred hCcHHHHHHHHHHHHHHHHhhccccc-cCcHHHHHHHHhhcccee--eCCCcEEEccCCccC
Q 006911 352 NIPKELGKKIKRELCWHLLKKVHEFR-MLKEETLDALCDCVKPTF--FTEHAHIIREGDPID 410 (626)
Q Consensus 352 ~Lp~~Lr~ei~~~~~~~~L~~~~~F~-~ls~~~l~~L~~~l~~~~--~~~ge~I~~~G~~~~ 410 (626)
.+|+. ..++...+...++.-.-.|. ..++...+..+....+.. +.+||.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 35555 34444455444444333444 567788888999999988 999999999999754
No 68
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=37.04 E-value=55 Score=36.25 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhchHHHHhhcccCCC
Q 006911 246 HCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPFQNL 322 (626)
Q Consensus 246 ~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l 322 (626)
.|++|++...+--|. ||.|.+...++..-++-++..++.+--.+++++.+.- +....-++.+++..++..+
T Consensus 598 NsLWFsLgAFMQQG~-DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTv-----ErMvsPIESaEDLAkQteI 668 (897)
T KOG1054|consen 598 NSLWFSLGAFMQQGC-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV-----ERMVSPIESAEDLAKQTEI 668 (897)
T ss_pred HHHHHHHHHHHhcCC-CCCccccccceeccchhhhhhhhhhhhhhHHHHHHhH-----HhhcCcchhHHHHhhccee
Confidence 599999999998886 8999999999999999888888777767777776643 3334445556666665554
No 69
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=34.67 E-value=65 Score=30.24 Aligned_cols=61 Identities=8% Similarity=0.163 Sum_probs=40.0
Q ss_pred CccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHH
Q 006911 407 DPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDL 485 (626)
Q Consensus 407 ~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f 485 (626)
+..++++++++|.+.+...++++.. ...+.+||+|=--.= -..+-++.++|..+++.+..-
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~----~v~L~eGd~fllP~g--------------vpHsP~r~~~tv~LviE~~r~ 112 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR----DVPIREGEMFLLPPH--------------VPHSPQREAGSIGLVIERKRP 112 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee----eEEECCCCEEEeCCC--------------CCcCCccCCCeEEEEEEeCCC
Confidence 4567999999999998876655321 257999998854310 111334457888888865543
No 70
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=33.38 E-value=1.1e+02 Score=29.84 Aligned_cols=34 Identities=6% Similarity=0.054 Sum_probs=25.1
Q ss_pred ccceeeCCCcEEEccCCccCEEEEEEEceEEEEE
Q 006911 391 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYS 424 (626)
Q Consensus 391 l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~ 424 (626)
++...+.+|+..-.+-...+.+..++.|++.+..
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~ 64 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSA 64 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEee
Confidence 3455678888876665556677778999999875
No 71
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=32.61 E-value=1.1e+02 Score=27.56 Aligned_cols=56 Identities=11% Similarity=0.098 Sum_probs=36.4
Q ss_pred hccceeeCCCcEEEccCC-ccCEEEEEEEceEEEEEecC-CccccceeeeeccCCCeEecc
Q 006911 390 CVKPTFFTEHAHIIREGD-PIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDFYGAE 448 (626)
Q Consensus 390 ~l~~~~~~~ge~I~~~G~-~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~~l~~G~~fGe~ 448 (626)
.+....+.||...-..-. ...++++|++|+..+...++ +.+ .....+.+||.+=-.
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~---~~~~~l~~GD~~~ip 88 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNK---VYDARLREGDVFVVP 88 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCe---EEEEEecCCCEEEEC
Confidence 344556778887644432 25689999999999886443 111 223679999987643
No 72
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=32.08 E-value=47 Score=22.03 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=19.7
Q ss_pred chHHHHhhcccCCCC-----HHHHHHHHHHH
Q 006911 309 KPREIEEWKPFQNLS-----ANLQQEMKKYK 334 (626)
Q Consensus 309 ~~~~i~~~m~~~~l~-----~~l~~rv~~y~ 334 (626)
+..++.++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 356788888888887 67888888874
No 73
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=29.87 E-value=1.3e+02 Score=25.77 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhc---------CCC---C-HHHHHhhCcHHHHHHHHHHHHHH
Q 006911 321 NLSANLQQEMKKYKPYIRRKT---------NHI---D-IENLLNNIPKELGKKIKRELCWH 368 (626)
Q Consensus 321 ~l~~~l~~rv~~y~~~~~~~~---------~~~---~-~~~il~~Lp~~Lr~ei~~~~~~~ 368 (626)
-||.+++.+|..-....-... ... . ..++|..||+.+|.||.......
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 478999999855433221100 000 1 35999999999999998876554
No 74
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=29.81 E-value=1.2e+02 Score=24.79 Aligned_cols=64 Identities=19% Similarity=0.133 Sum_probs=42.5
Q ss_pred hccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEE
Q 006911 390 CVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTI 469 (626)
Q Consensus 390 ~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv 469 (626)
.....++.||..+=.....+.+..||++|.... ++ ..+.+|++.=... .+..+.
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d----~~--------~~~~~G~~~~~p~--------------g~~h~~ 78 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD----GD--------GRYGAGDWLRLPP--------------GSSHTP 78 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE----TT--------CEEETTEEEEE-T--------------TEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE----CC--------ccCCCCeEEEeCC--------------CCcccc
Confidence 445667889988877666777888999999862 22 2467888765431 334467
Q ss_pred EeccceeeEE
Q 006911 470 EALTNIEAFT 479 (626)
Q Consensus 470 ~A~~~~~ll~ 479 (626)
.+.+.|.+++
T Consensus 79 ~s~~gc~~~v 88 (91)
T PF12973_consen 79 RSDEGCLILV 88 (91)
T ss_dssp EESSCEEEEE
T ss_pred CcCCCEEEEE
Confidence 7888888875
No 75
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=25.35 E-value=3.6e+02 Score=25.21 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 006911 268 VWENIFVILVVSSGFLFFALLIGN-MQIYL 296 (626)
Q Consensus 268 ~~E~i~~i~~~i~G~~~fa~iig~-i~~i~ 296 (626)
-.+-++++.++.+++...+|++|- +++.+
T Consensus 73 GlDP~~~~g~~t~a~g~lG~L~GP~~G~~v 102 (173)
T PF08566_consen 73 GLDPFMVYGLATLACGALGWLVGPSLGNQV 102 (173)
T ss_pred CcCHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 458889999999999999999974 44433
No 76
>PHA03029 hypothetical protein; Provisional
Probab=24.99 E-value=3.2e+02 Score=21.50 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=25.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006911 267 DVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLK 304 (626)
Q Consensus 267 t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~~ 304 (626)
++.|.+|-++..++=.++.--++|-+-..+-++++-+.
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~ra 39 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRA 39 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788887777777666666667766666666554443
No 77
>PRK06771 hypothetical protein; Provisional
Probab=24.89 E-value=3.8e+02 Score=22.34 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhchHHHHhhcccCCCCHHHHHHHHH
Q 006911 285 FALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPFQNLSANLQQEMKK 332 (626)
Q Consensus 285 fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~ 332 (626)
|-|+...+..+-+..+.+....+.+++.+.+.+-.-...+.+.+++++
T Consensus 14 ~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~~~~~~~e~~~ 61 (93)
T PRK06771 14 FIYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDREPPVNKELRQ 61 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHH
Confidence 445666777777777888888888888887777555443333344433
No 78
>PRK09108 type III secretion system protein HrcU; Validated
Probab=24.33 E-value=3.4e+02 Score=28.69 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=46.3
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhchHHHHhhcccCCCCHHHHHHHHH
Q 006911 264 SGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPFQNLSANLQQEMKK 332 (626)
Q Consensus 264 ~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~ 332 (626)
.+......++.++..++..+..++++-.+....-+...-.++.+-..+++++-+|+..=+++++.|+|+
T Consensus 173 ~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq 241 (353)
T PRK09108 173 SPPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKR 241 (353)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 344455556666666666666666666666666555555555666666888888888888888877665
No 79
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=24.32 E-value=2.7e+02 Score=26.59 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=24.7
Q ss_pred cCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 409 IDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 409 ~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
..++|+|++|+..+...+...+ .....+.+|+.+=-
T Consensus 97 ~~EiyyvlsG~g~~~l~~~~G~---~~~~~v~pGd~v~I 132 (191)
T PRK04190 97 RAEIYYGLKGKGLMLLQDPEGE---ARWIEMEPGTVVYV 132 (191)
T ss_pred CCEEEEEEeCEEEEEEecCCCc---EEEEEECCCCEEEE
Confidence 3599999999999886443211 12357899998653
No 80
>PHA01757 hypothetical protein
Probab=24.01 E-value=3e+02 Score=22.04 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=32.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhchHHHH
Q 006911 266 SDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIE 314 (626)
Q Consensus 266 ~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~ 314 (626)
.+..|...--|....|.+.-++++|.+..+..+ ..+.+.|.+.++.++
T Consensus 3 i~l~e~al~gf~a~~g~l~~~fii~e~~hlyne-k~~nenf~~AvD~m~ 50 (98)
T PHA01757 3 ITLLEGALYGFFAVTGALSASFIIGEIVHLYNE-KQRNENFAKAIDQMS 50 (98)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HhhhHhHHHHHHHHH
Confidence 345677777788888888888999988876654 334455655555443
No 81
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=23.25 E-value=94 Score=23.27 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHh
Q 006911 319 FQNLSANLQQEMKKYKPYIRRK 340 (626)
Q Consensus 319 ~~~l~~~l~~rv~~y~~~~~~~ 340 (626)
..++|.+|++.|..|.+|..+.
T Consensus 8 fqkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 8 FQKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHHCcHHHHHHHHHHHHHHHHH
Confidence 3589999999999999998764
No 82
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=21.85 E-value=1.1e+02 Score=32.66 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhccCCCc--ccccchhhhHHHHHHHHHHHHH
Q 006911 243 KLLHCFVWGLQNLSNLGHDL--QSGSDVWENIFVILVVSSGFLF 284 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGD--i~p~t~~E~i~~i~~~i~G~~~ 284 (626)
....+.+.++++++|.|+.- ...-++.=.++.++.|++|+.-
T Consensus 231 ~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~ 274 (390)
T TIGR00933 231 ALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCS 274 (390)
T ss_pred HHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCC
Confidence 44667888999999999873 3333445567778888888654
No 83
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=21.64 E-value=1.3e+02 Score=24.10 Aligned_cols=56 Identities=14% Similarity=0.337 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHhhCcHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHhhccce
Q 006911 324 ANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPT 394 (626)
Q Consensus 324 ~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~ 394 (626)
++...-|..|+.-.. -.+++..||+.+|.++...+ .-+..++++.+..+...++.+
T Consensus 14 Pq~iAliLs~L~~~~-------AA~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~~ 69 (79)
T PF14841_consen 14 PQTIALILSYLPPEQ-------AAEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEEK 69 (79)
T ss_dssp HHHHHHHHHTS-HHH-------HHHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHH-------HHHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHHH
Confidence 455555555544333 25889999999998887665 346788898888887776654
No 84
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=21.49 E-value=1.9e+02 Score=30.73 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=34.5
Q ss_pred cceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 392 KPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 392 ~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
....+.||...-.--....++.+|++|++++...+.+.+. ....+++||++=-
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~---~~~~L~~GD~~~f 122 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRN---YIDDVGAGDLWYF 122 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcE---EEeEECCCCEEEE
Confidence 3456777776532222456899999999999876532221 1246999998753
No 85
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=21.42 E-value=3.1e+02 Score=19.54 Aligned_cols=40 Identities=8% Similarity=0.143 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhchHH
Q 006911 273 FVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPRE 312 (626)
Q Consensus 273 ~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~ 312 (626)
++.+..+...+....+.+.+.++-.+......+++..-++
T Consensus 9 ~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d 48 (53)
T PF01484_consen 9 VSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDD 48 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555566666666666666666554443
No 86
>PRK11171 hypothetical protein; Provisional
Probab=20.75 E-value=2.2e+02 Score=28.70 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=37.4
Q ss_pred hccceeeCCCcEEEc-cCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 390 CVKPTFFTEHAHIIR-EGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 390 ~l~~~~~~~ge~I~~-~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
.+....++||..+-. ......+.++|++|+.++.. +++. ..+.+||++--
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~~------~~l~~GD~i~~ 235 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NNDW------VEVEAGDFIWM 235 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCEE------EEeCCCCEEEE
Confidence 455677999999865 35566799999999999875 3333 47999998653
No 87
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.19 E-value=3.5e+02 Score=20.50 Aligned_cols=27 Identities=7% Similarity=0.021 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006911 273 FVILVVSSGFLFFALLIGNMQIYLQSR 299 (626)
Q Consensus 273 ~~i~~~i~G~~~fa~iig~i~~i~~~~ 299 (626)
....+.++++++.|.++|.+.......
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~ 44 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRL 44 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777766654
No 88
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=20.09 E-value=1.1e+03 Score=25.35 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 006911 270 ENIFVILVVSSGFLFFA-LLIGNMQIYLQS 298 (626)
Q Consensus 270 E~i~~i~~~i~G~~~fa-~iig~i~~i~~~ 298 (626)
..+++.+..+.-.++.. .+++-+.+|+..
T Consensus 391 ~~~lg~l~~~~~~~~~~~illNl~iaIi~~ 420 (425)
T PF08016_consen 391 NPVLGPLFFFSFMFLVFFILLNLFIAIIND 420 (425)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333 344555566544
No 89
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=20.01 E-value=1.2e+02 Score=24.89 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=20.8
Q ss_pred EEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 411 ELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 411 ~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
..++|.+|.|++...+ . ...+.+|+.|=-
T Consensus 35 ~vF~V~~G~v~Vti~~--~------~f~v~~G~~F~V 63 (85)
T PF11699_consen 35 MVFYVIKGKVEVTIHE--T------SFVVTKGGSFQV 63 (85)
T ss_dssp EEEEEEESEEEEEETT--E------EEEEETT-EEEE
T ss_pred EEEEEEeCEEEEEEcC--c------EEEEeCCCEEEE
Confidence 5788999999998743 1 146888888853
Done!