Query 006911
Match_columns 626
No_of_seqs 508 out of 3162
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 12:13:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 1.9E-34 6.7E-39 304.1 16.7 194 240-509 158-351 (355)
2 2ptm_A Hyperpolarization-activ 100.0 2.7E-31 9.1E-36 256.4 20.6 195 297-507 1-195 (198)
3 3bpz_A Potassium/sodium hyperp 100.0 6.3E-31 2.1E-35 254.7 20.9 196 297-509 2-197 (202)
4 3ukn_A Novel protein similar t 100.0 1E-31 3.6E-36 262.1 14.0 200 293-507 1-200 (212)
5 4f8a_A Potassium voltage-gated 99.8 1.5E-19 5.1E-24 167.1 15.8 143 346-502 5-147 (160)
6 1orq_C Potassium channel; volt 99.8 2.5E-20 8.6E-25 182.9 9.0 57 242-298 164-220 (223)
7 3mdp_A Cyclic nucleotide-bindi 99.7 1.2E-17 3.9E-22 150.9 13.1 133 367-510 5-140 (142)
8 3ocp_A PRKG1 protein; serine/t 99.7 1.7E-17 5.7E-22 149.8 11.0 131 352-498 7-137 (139)
9 2pqq_A Putative transcriptiona 99.7 9.7E-17 3.3E-21 146.0 15.5 133 367-511 4-137 (149)
10 3gyd_A CNMP-BD protein, cyclic 99.7 1.1E-16 3.7E-21 152.4 15.6 150 346-507 13-167 (187)
11 3dn7_A Cyclic nucleotide bindi 99.7 6.3E-17 2.2E-21 154.6 13.6 150 366-527 5-159 (194)
12 3fx3_A Cyclic nucleotide-bindi 99.7 1.1E-16 3.6E-21 158.2 15.1 154 364-529 7-164 (237)
13 3idb_B CAMP-dependent protein 99.7 4.8E-17 1.6E-21 150.7 11.3 128 359-498 29-156 (161)
14 2r9r_B Paddle chimera voltage 99.7 4.8E-17 1.7E-21 177.9 12.8 114 242-364 374-487 (514)
15 2z69_A DNR protein; beta barre 99.7 3.3E-16 1.1E-20 143.3 15.8 129 367-507 11-141 (154)
16 1vp6_A CNBD, cyclic-nucleotide 99.7 2.2E-16 7.6E-21 141.9 13.0 125 367-509 10-134 (138)
17 3d0s_A Transcriptional regulat 99.7 4E-17 1.4E-21 160.1 8.6 152 367-530 5-160 (227)
18 4ev0_A Transcription regulator 99.7 9.7E-16 3.3E-20 148.8 16.4 146 370-527 1-150 (216)
19 1zyb_A Transcription regulator 99.7 2E-15 7E-20 148.6 17.5 150 367-526 17-171 (232)
20 1wgp_A Probable cyclic nucleot 99.7 1.1E-16 3.8E-21 143.8 7.6 126 368-496 6-133 (137)
21 2gau_A Transcriptional regulat 99.7 3.7E-16 1.3E-20 153.7 11.8 144 372-527 14-161 (232)
22 3e97_A Transcriptional regulat 99.6 1.4E-15 4.7E-20 149.5 15.1 131 367-509 5-136 (231)
23 3dv8_A Transcriptional regulat 99.6 7.8E-16 2.7E-20 149.9 13.2 150 368-529 3-158 (220)
24 3dkw_A DNR protein; CRP-FNR, H 99.6 2.1E-16 7.2E-21 154.8 8.2 148 367-526 8-160 (227)
25 3iwz_A CAP-like, catabolite ac 99.6 1.9E-15 6.4E-20 148.3 14.7 153 367-530 10-171 (230)
26 3pna_A CAMP-dependent protein 99.6 1.9E-15 6.4E-20 138.8 12.9 118 364-497 34-151 (154)
27 3shr_A CGMP-dependent protein 99.6 3.8E-15 1.3E-19 152.4 13.9 136 348-499 19-154 (299)
28 4ava_A Lysine acetyltransferas 99.6 6.3E-15 2.1E-19 153.3 15.4 129 367-508 12-140 (333)
29 2fmy_A COOA, carbon monoxide o 99.6 4.5E-16 1.5E-20 151.8 6.3 145 368-531 4-151 (220)
30 4h33_A LMO2059 protein; bilaye 99.6 1E-15 3.5E-20 137.2 8.0 92 244-335 44-135 (137)
31 2a9h_A Voltage-gated potassium 99.6 2.5E-15 8.6E-20 137.1 10.0 63 242-304 83-145 (155)
32 1ft9_A Carbon monoxide oxidati 99.6 6.5E-16 2.2E-20 151.0 6.3 141 369-528 1-144 (222)
33 3shr_A CGMP-dependent protein 99.6 4.6E-15 1.6E-19 151.8 12.7 135 364-510 153-289 (299)
34 3vou_A ION transport 2 domain 99.6 9.9E-15 3.4E-19 133.0 13.1 86 244-329 53-148 (148)
35 2ih3_C Voltage-gated potassium 99.6 9.2E-15 3.1E-19 128.4 11.4 60 242-301 60-119 (122)
36 2d93_A RAP guanine nucleotide 99.6 9.2E-16 3.2E-20 137.4 5.0 122 356-493 4-127 (134)
37 3ryp_A Catabolite gene activat 99.6 1.7E-14 5.7E-19 139.3 13.3 145 374-529 2-150 (210)
38 2oz6_A Virulence factor regula 99.6 2.9E-14 9.9E-19 137.3 14.6 139 379-528 1-146 (207)
39 1o5l_A Transcriptional regulat 99.5 1.7E-14 6E-19 139.9 11.8 145 372-527 3-151 (213)
40 3e6c_C CPRK, cyclic nucleotide 99.5 8E-15 2.7E-19 146.0 8.9 149 369-532 10-162 (250)
41 2qcs_B CAMP-dependent protein 99.5 8.5E-14 2.9E-18 141.6 15.2 128 364-502 153-281 (291)
42 2qcs_B CAMP-dependent protein 99.5 1.2E-13 4.2E-18 140.5 15.7 126 363-504 34-159 (291)
43 3of1_A CAMP-dependent protein 99.5 6.3E-14 2.2E-18 138.6 12.9 117 365-496 122-238 (246)
44 3kcc_A Catabolite gene activat 99.5 7E-14 2.4E-18 140.1 13.3 144 377-531 55-202 (260)
45 3of1_A CAMP-dependent protein 99.5 3.6E-14 1.2E-18 140.3 11.0 120 366-501 5-124 (246)
46 3tnp_B CAMP-dependent protein 99.5 8.5E-14 2.9E-18 149.2 14.4 123 362-496 139-261 (416)
47 4din_B CAMP-dependent protein 99.5 5.4E-14 1.8E-18 149.1 12.5 129 364-503 244-373 (381)
48 3la7_A Global nitrogen regulat 99.5 1.2E-13 4.2E-18 136.9 12.0 141 381-531 30-177 (243)
49 4din_B CAMP-dependent protein 99.5 1.4E-13 4.8E-18 145.9 12.0 124 364-503 126-249 (381)
50 3eff_K Voltage-gated potassium 99.5 8.2E-14 2.8E-18 125.6 8.5 59 243-301 40-98 (139)
51 2bgc_A PRFA; bacterial infecti 99.5 2.6E-13 8.9E-18 134.0 11.9 141 377-529 2-150 (238)
52 3tnp_B CAMP-dependent protein 99.4 1.5E-13 5E-18 147.4 10.3 130 366-507 265-401 (416)
53 1o7f_A CAMP-dependent RAP1 gua 99.4 2E-13 6.8E-18 148.8 11.6 137 353-500 27-164 (469)
54 1o7f_A CAMP-dependent RAP1 gua 99.4 7E-13 2.4E-17 144.5 11.0 124 364-502 333-458 (469)
55 2q67_A Potassium channel prote 99.4 6.1E-12 2.1E-16 108.7 12.8 60 243-302 49-108 (114)
56 4f7z_A RAP guanine nucleotide 99.3 3.6E-12 1.2E-16 151.6 13.8 136 349-495 24-159 (999)
57 3b02_A Transcriptional regulat 99.3 3.8E-12 1.3E-16 121.4 9.4 117 394-529 2-122 (195)
58 2k1e_A Water soluble analogue 99.3 3.9E-13 1.3E-17 114.3 2.2 59 243-301 40-98 (103)
59 3cf6_E RAP guanine nucleotide 99.3 8.2E-12 2.8E-16 141.5 11.0 133 347-495 12-146 (694)
60 3ouf_A Potassium channel prote 99.3 2.9E-11 1E-15 101.2 11.3 55 244-298 33-87 (97)
61 3ldc_A Calcium-gated potassium 99.2 2.5E-11 8.4E-16 98.4 7.6 54 243-296 28-81 (82)
62 4f7z_A RAP guanine nucleotide 99.2 6.8E-11 2.3E-15 140.6 13.7 113 364-491 333-447 (999)
63 2zcw_A TTHA1359, transcription 99.2 1.8E-11 6.1E-16 117.4 6.0 123 387-529 1-129 (202)
64 3pjs_K KCSA, voltage-gated pot 99.1 2.3E-12 8E-17 119.5 -4.0 61 243-303 67-127 (166)
65 3rvy_A ION transport protein; 99.0 1.2E-10 4E-15 118.2 6.0 62 240-301 177-244 (285)
66 1xl4_A Inward rectifier potass 99.0 1.1E-09 3.9E-14 110.7 10.4 55 243-297 82-136 (301)
67 3um7_A Potassium channel subfa 98.9 2.1E-09 7E-14 108.4 9.4 57 243-299 115-171 (309)
68 1p7b_A Integral membrane chann 98.9 7.6E-10 2.6E-14 113.2 6.0 56 243-298 96-151 (333)
69 2qks_A KIR3.1-prokaryotic KIR 98.8 4.8E-09 1.6E-13 106.9 7.0 56 243-298 78-133 (321)
70 4gx0_A TRKA domain protein; me 98.7 2.7E-08 9.1E-13 110.8 10.6 55 244-298 52-107 (565)
71 3sya_A G protein-activated inw 98.7 6.7E-08 2.3E-12 98.5 11.9 56 244-299 92-149 (340)
72 3um7_A Potassium channel subfa 98.7 1.1E-08 3.7E-13 103.1 4.8 58 244-301 225-288 (309)
73 3ukm_A Potassium channel subfa 98.7 3.3E-08 1.1E-12 98.0 8.0 56 243-298 93-148 (280)
74 3ukm_A Potassium channel subfa 98.6 4.2E-08 1.4E-12 97.3 5.9 55 244-298 202-263 (280)
75 3spc_A Inward-rectifier K+ cha 98.6 2E-07 6.9E-12 95.2 10.3 57 242-298 93-151 (343)
76 1lnq_A MTHK channels, potassiu 98.4 1.5E-08 5.2E-13 105.1 -2.0 55 245-299 47-101 (336)
77 4dxw_A Navrh, ION transport pr 97.8 0.00019 6.5E-09 69.7 13.8 22 242-263 164-185 (229)
78 1ors_C Potassium channel; volt 94.5 0.018 6.2E-07 50.4 2.8 30 60-94 47-80 (132)
79 2kyh_A KVAP, voltage-gated pot 93.1 0.024 8.1E-07 50.6 1.1 30 61-94 63-95 (147)
80 3fjs_A Uncharacterized protein 71.0 19 0.00066 29.6 8.7 67 391-479 38-104 (114)
81 3rns_A Cupin 2 conserved barre 69.8 16 0.00056 34.4 8.9 69 390-480 38-106 (227)
82 3kg2_A Glutamate receptor 2; I 65.7 4.9 0.00017 45.8 5.0 72 242-319 562-633 (823)
83 2ozj_A Cupin 2, conserved barr 60.8 25 0.00086 28.6 7.4 44 396-447 45-88 (114)
84 1yhf_A Hypothetical protein SP 60.0 42 0.0014 27.1 8.7 48 392-447 43-90 (115)
85 3lwc_A Uncharacterized protein 59.1 17 0.00058 30.4 5.9 46 393-447 44-89 (119)
86 2pfw_A Cupin 2, conserved barr 55.2 49 0.0017 26.7 8.3 68 391-480 36-103 (116)
87 4e2g_A Cupin 2 conserved barre 47.7 63 0.0021 26.5 7.9 49 391-447 43-91 (126)
88 3d0j_A Uncharacterized protein 47.7 51 0.0017 28.4 7.0 65 404-482 45-109 (140)
89 1dgw_A Canavalin; duplicated s 47.2 20 0.00067 32.4 4.7 53 391-447 43-95 (178)
90 1o5u_A Novel thermotoga mariti 46.9 49 0.0017 26.6 6.7 48 391-447 33-80 (101)
91 2gu9_A Tetracenomycin polyketi 45.5 36 0.0012 27.2 5.8 48 392-447 24-74 (113)
92 1yfu_A 3-hydroxyanthranilate-3 45.0 25 0.00087 31.5 4.9 63 382-448 12-90 (174)
93 1v70_A Probable antibiotics sy 44.8 40 0.0014 26.3 5.9 47 392-446 31-78 (105)
94 3h8u_A Uncharacterized conserv 42.0 27 0.00094 28.9 4.6 49 391-446 41-90 (125)
95 1zvf_A 3-hydroxyanthranilate 3 41.7 83 0.0028 28.2 7.6 65 382-448 12-93 (176)
96 3rns_A Cupin 2 conserved barre 41.6 70 0.0024 29.8 7.9 67 391-479 155-222 (227)
97 3es4_A Uncharacterized protein 39.1 23 0.0008 29.6 3.5 44 396-447 49-92 (116)
98 2bnm_A Epoxidase; oxidoreducta 35.3 83 0.0029 28.3 7.2 49 395-447 123-174 (198)
99 3bcw_A Uncharacterized protein 35.3 24 0.00081 29.8 3.0 46 395-448 55-100 (123)
100 2q30_A Uncharacterized protein 33.9 1.4E+02 0.0046 23.5 7.6 48 393-447 37-86 (110)
101 3ibm_A Cupin 2, conserved barr 33.8 57 0.0019 28.9 5.5 47 393-447 60-106 (167)
102 3lag_A Uncharacterized protein 33.4 11 0.00038 30.4 0.6 51 391-446 19-70 (98)
103 3es1_A Cupin 2, conserved barr 32.2 35 0.0012 30.7 3.8 47 392-445 82-128 (172)
104 2fqp_A Hypothetical protein BP 31.8 18 0.00063 28.6 1.7 49 393-447 22-71 (97)
105 2vpv_A Protein MIF2, MIF2P; nu 30.7 42 0.0015 29.9 4.0 32 408-447 109-140 (166)
106 3d82_A Cupin 2, conserved barr 30.3 83 0.0028 24.4 5.5 50 410-481 51-100 (102)
107 1o4t_A Putative oxalate decarb 29.3 67 0.0023 27.0 5.0 46 393-446 61-107 (133)
108 2b8m_A Hypothetical protein MJ 29.3 50 0.0017 26.8 4.1 45 394-446 32-77 (117)
109 4b29_A Dimethylsulfoniopropion 29.0 68 0.0023 29.9 5.2 46 396-448 139-184 (217)
110 4i4a_A Similar to unknown prot 28.3 75 0.0026 26.1 5.1 76 394-491 39-118 (128)
111 3jzv_A Uncharacterized protein 27.6 49 0.0017 29.4 4.0 46 394-447 58-103 (166)
112 1fi2_A Oxalate oxidase, germin 27.5 1.1E+02 0.0039 27.7 6.6 54 391-447 74-131 (201)
113 2pyt_A Ethanolamine utilizatio 27.5 55 0.0019 27.8 4.1 45 394-448 62-106 (133)
114 3kgz_A Cupin 2 conserved barre 27.3 52 0.0018 28.8 4.0 44 395-446 50-93 (156)
115 2q1z_B Anti-sigma factor CHRR, 27.2 95 0.0032 28.3 5.9 65 390-480 126-192 (195)
116 3i7d_A Sugar phosphate isomera 27.0 60 0.0021 28.5 4.4 47 393-447 47-95 (163)
117 2opk_A Hypothetical protein; p 26.9 60 0.002 26.4 4.1 36 407-448 51-86 (112)
118 4axo_A EUTQ, ethanolamine util 26.7 57 0.002 28.6 4.1 31 409-447 84-114 (151)
119 1sfn_A Conserved hypothetical 26.2 75 0.0026 30.1 5.2 51 390-448 166-217 (246)
120 1y9q_A Transcriptional regulat 26.0 1.1E+02 0.0037 27.4 6.2 46 394-447 109-156 (192)
121 3nw4_A Gentisate 1,2-dioxygena 25.7 1.3E+02 0.0045 30.5 7.1 75 393-489 283-357 (368)
122 2ea7_A 7S globulin-1; beta bar 25.5 59 0.002 33.9 4.6 54 389-446 61-114 (434)
123 1uij_A Beta subunit of beta co 25.3 59 0.002 33.7 4.6 53 390-446 50-102 (416)
124 1lr5_A Auxin binding protein 1 24.8 60 0.002 28.3 4.0 54 393-447 45-100 (163)
125 2cav_A Protein (canavalin); vi 24.4 65 0.0022 33.7 4.7 54 390-447 87-140 (445)
126 3bu7_A Gentisate 1,2-dioxygena 24.2 49 0.0017 34.0 3.7 50 392-448 126-175 (394)
127 1vj2_A Novel manganese-contain 24.2 57 0.002 27.0 3.6 45 394-446 53-97 (126)
128 1sfn_A Conserved hypothetical 23.0 1.9E+02 0.0066 27.1 7.5 45 394-448 55-99 (246)
129 3h7j_A Bacilysin biosynthesis 22.8 1E+02 0.0035 29.0 5.5 47 391-445 36-82 (243)
130 2i45_A Hypothetical protein; n 22.7 69 0.0024 25.4 3.7 67 397-484 36-102 (107)
131 2qnk_A 3-hydroxyanthranilate 3 22.6 1.7E+02 0.0058 28.3 6.8 58 408-483 50-107 (286)
132 3cew_A Uncharacterized cupin p 21.7 85 0.0029 25.8 4.2 46 393-446 30-77 (125)
133 3bu7_A Gentisate 1,2-dioxygena 21.6 75 0.0025 32.7 4.4 74 392-487 297-373 (394)
134 1sq4_A GLXB, glyoxylate-induce 21.4 1.1E+02 0.0037 29.7 5.4 50 389-446 191-241 (278)
135 2vqa_A SLL1358 protein, MNCA; 21.4 1.3E+02 0.0045 30.0 6.3 52 393-447 56-108 (361)
136 2f4p_A Hypothetical protein TM 21.3 1.1E+02 0.0036 26.3 4.8 48 393-447 52-99 (147)
137 2vqa_A SLL1358 protein, MNCA; 21.1 1.3E+02 0.0044 30.1 6.2 53 391-447 236-290 (361)
138 3l2h_A Putative sugar phosphat 20.6 1.1E+02 0.0036 26.6 4.8 46 393-446 50-97 (162)
139 2o1q_A Putative acetyl/propion 20.3 76 0.0026 27.3 3.6 52 391-448 46-97 (145)
140 4e2q_A Ureidoglycine aminohydr 20.2 1.2E+02 0.0042 29.1 5.4 68 393-481 74-141 (266)
141 3ebr_A Uncharacterized RMLC-li 20.1 98 0.0033 27.2 4.3 49 390-448 43-91 (159)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=1.9e-34 Score=304.11 Aligned_cols=194 Identities=19% Similarity=0.284 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhchHHHHhhccc
Q 006911 240 ILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPF 319 (626)
Q Consensus 240 ~~~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~ 319 (626)
.+..|..|+||+++|||||||||++|.|..|+++++++|++|.+++++.+|.+++.+.+...+
T Consensus 158 ~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~----------------- 220 (355)
T 3beh_A 158 KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR----------------- 220 (355)
T ss_dssp HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 345688999999999999999999999999999999999999999999999998877542110
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHhhCcHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHhhccceeeCCC
Q 006911 320 QNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEH 399 (626)
Q Consensus 320 ~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~g 399 (626)
+++.+ +.+.++++++|+++++++++.++..++.+.|+||
T Consensus 221 -----------~~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~g 259 (355)
T 3beh_A 221 -----------GDFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAG 259 (355)
T ss_dssp -----------HHHHH------------------------------HHC-------------------------------
T ss_pred -----------Hhhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCC
Confidence 00100 2467888999999999999999999999999999
Q ss_pred cEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeEE
Q 006911 400 AHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFT 479 (626)
Q Consensus 400 e~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~ 479 (626)
|.|+++||.++++|||.+|.|+++..+ + ..+++|++|||.+++ .+ .++.++++|.++|+++.
T Consensus 260 e~I~~~G~~~~~ly~I~~G~v~v~~~~---~------~~l~~G~~fGe~~~l---~~------~~~~~~~~A~~~~~l~~ 321 (355)
T 3beh_A 260 AVICRIGEPGDRMFFVVEGSVSVATPN---P------VELGPGAFFGEMALI---SG------EPRSATVSAATTVSLLS 321 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEeCCCcCceEEEEEeeEEEEEECC---e------eEECCCCEEeehHHh---CC------CCcceEEEECccEEEEE
Confidence 999999999999999999999998654 2 479999999999763 21 27888999999999999
Q ss_pred eCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006911 480 LMADDLKIVFNEKMNQAALVIQLAWRHYTR 509 (626)
Q Consensus 480 l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~ 509 (626)
+++++|.++++++|+++..+.+.+.+|+.+
T Consensus 322 i~~~~f~~ll~~~p~~~~~l~~~l~~rl~~ 351 (355)
T 3beh_A 322 LHSADFQMLCSSSPEIAEIFRKTALERRGA 351 (355)
T ss_dssp ------------------------------
T ss_pred EeHHHHHHHHHHCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888877777643
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=2.7e-31 Score=256.38 Aligned_cols=195 Identities=16% Similarity=0.263 Sum_probs=177.5
Q ss_pred HHhhHHHHHHHhchHHHHhhcccCCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHhhCcHHHHHHHHHHHHHHHHhhcccc
Q 006911 297 QSRTVRLKEMTVKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEF 376 (626)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~L~~~~~F 376 (626)
++++.+..+|+++|+.+++||+.+++|++||.||++||+|.|+ .++.+++++++.||++||.++..+++.++++++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f 79 (198)
T 2ptm_A 1 GAMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFF 79 (198)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcch
Confidence 3678899999999999999999999999999999999999997 578899999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcc
Q 006911 377 RMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRD 456 (626)
Q Consensus 377 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~ 456 (626)
.+++++++..|+..++...|.||++|+++|+.++++|||.+|.|+++..+ |+ ++..+++|++||+.+++ .+
T Consensus 80 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~-g~-----~~~~l~~G~~fGe~~~~---~~ 150 (198)
T 2ptm_A 80 VGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSD-GV-----IATSLSDGSYFGEICLL---TR 150 (198)
T ss_dssp TTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTT-SC-----EEEEECTTCEESCHHHH---HS
T ss_pred hcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecC-Ce-----EEEEecCCCEechHHHc---CC
Confidence 99999999999999999999999999999999999999999999998733 32 34789999999999873 22
Q ss_pred cCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006911 457 CSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY 507 (626)
Q Consensus 457 ~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~ 507 (626)
.++.++++|.++|+++.|++++|.++++++|.++..+.+.+.+++
T Consensus 151 ------~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl 195 (198)
T 2ptm_A 151 ------ERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRL 195 (198)
T ss_dssp ------SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC
T ss_pred ------CccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 278889999999999999999999999999999988887766554
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=6.3e-31 Score=254.65 Aligned_cols=196 Identities=19% Similarity=0.269 Sum_probs=178.1
Q ss_pred HHhhHHHHHHHhchHHHHhhcccCCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHhhCcHHHHHHHHHHHHHHHHhhcccc
Q 006911 297 QSRTVRLKEMTVKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEF 376 (626)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~L~~~~~F 376 (626)
++++.+..+|+++|+.+++||+.+++|++||.||++||+|.|+ .++.+++++++.||++||.++..+.+.++|+++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 4678999999999999999999999999999999999999997 578899999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcc
Q 006911 377 RMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRD 456 (626)
Q Consensus 377 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~ 456 (626)
.+++++++..|+..+++..|.||++|+++|+.++++|||.+|.|+++.. +++. ..+++|++||+.+++ .+
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~-~g~~------~~l~~G~~fGe~~~~---~~ 150 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK-GNKE------MKLSDGSYFGEICLL---TR 150 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECT-TSCC------EEEETTCEECHHHHH---HC
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEEC-CCeE------EEEcCCCEeccHHHh---cC
Confidence 9999999999999999999999999999999999999999999999853 3332 368999999998874 22
Q ss_pred cCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006911 457 CSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR 509 (626)
Q Consensus 457 ~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~ 509 (626)
.++.++++|.++|+++.|++++|.++++++|.++..+.+.+.+++.+
T Consensus 151 ------~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~ 197 (202)
T 3bpz_A 151 ------GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDR 197 (202)
T ss_dssp ------SBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHH
T ss_pred ------CCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 27888999999999999999999999999999999998888777643
No 4
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=1e-31 Score=262.15 Aligned_cols=200 Identities=20% Similarity=0.261 Sum_probs=173.4
Q ss_pred HHHHHHhhHHHHHHHhchHHHHhhcccCCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHhhCcHHHHHHHHHHHHHHHHhh
Q 006911 293 QIYLQSRTVRLKEMTVKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKK 372 (626)
Q Consensus 293 ~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~L~~ 372 (626)
|+|+++++.+..+|+++|+.+++||+.+++|++||.||++||+|.|+.+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 578999999999999999999999999999999999999999999998899999999999999999999999998777 8
Q ss_pred ccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhh
Q 006911 373 VHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDW 452 (626)
Q Consensus 373 ~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~ 452 (626)
+|+|++++++++..|+..+++..|.|||+|+++|+.++++|||.+|.|+++. + + .++..+++|++|||.+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-~-~-----~~~~~l~~G~~fGe~~~~- 151 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK-D-N-----TVLAILGKGDLIGSDSLT- 151 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES-S-S-----CEEEEECTTCEEECSCCS-
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE-C-C-----eEEEEecCCCCcCcHHhc-
Confidence 9999999999999999999999999999999999999999999999999985 2 2 245899999999998763
Q ss_pred hhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006911 453 ALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY 507 (626)
Q Consensus 453 ~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~ 507 (626)
. ....+++++++|.++|+++.|++++|.++++++|.++..+.+.+.+++
T Consensus 152 --~----~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l 200 (212)
T 3ukn_A 152 --K----EQVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDL 200 (212)
T ss_dssp --S----SSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHE
T ss_pred --c----CCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence 1 111178889999999999999999999999999999999888776665
No 5
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.82 E-value=1.5e-19 Score=167.07 Aligned_cols=143 Identities=21% Similarity=0.258 Sum_probs=119.9
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEe
Q 006911 346 IENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSF 425 (626)
Q Consensus 346 ~~~il~~Lp~~Lr~ei~~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~ 425 (626)
.+++++.||++||.++..+++.++|+++|+|++++++.++.++..++.+.|++|++|+++|+.++++|||.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred cCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHH
Q 006911 426 NDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQL 502 (626)
Q Consensus 426 ~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~ 502 (626)
+ .++..+++|++||+.+++ .+ ...++.++++|.++|+++.|++++|.++++++|.++..+.+.
T Consensus 85 --~-----~~~~~~~~G~~fG~~~~~---~~----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 147 (160)
T 4f8a_A 85 --D-----EVVAILGKGDVFGDVFWK---EA----TLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRN 147 (160)
T ss_dssp --T-----EEEEEEETTCEEECCTTT---CS----SCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred --C-----EEEEEecCCCEeCcHHHh---cC----cccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 1 345899999999999763 11 113788899999999999999999999999999998776654
No 6
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.81 E-value=2.5e-20 Score=182.90 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006911 242 QKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQS 298 (626)
Q Consensus 242 ~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~ 298 (626)
..|..|+||+++|||||||||++|.|..|+++++++|++|.+++|+.+|.+++.+++
T Consensus 164 ~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 164 KSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp CSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999998875
No 7
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.74 E-value=1.2e-17 Score=150.94 Aligned_cols=133 Identities=13% Similarity=0.148 Sum_probs=113.4
Q ss_pred HHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCcccccee---eeeccCCC
Q 006911 367 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRK---RDHLEDSD 443 (626)
Q Consensus 367 ~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~---~~~l~~G~ 443 (626)
.++|+++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+.++.. .+ +..+++|+
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~~~~~G~ 82 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGS--AANSTVCSVVPGA 82 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC-----------CEEEEECTTC
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCc--eEeeeEEEecCCC
Confidence 35788999999999999999999999999999999999999999999999999999854432222 34 68999999
Q ss_pred eEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006911 444 FYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTRR 510 (626)
Q Consensus 444 ~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~~ 510 (626)
+||+.+++ . ..++.++++|.++|+++.|++++|.++++++|.++..+++...+++.++
T Consensus 83 ~fG~~~~~---~------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~r 140 (142)
T 3mdp_A 83 IFGVSSLI---K------PYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLAR 140 (142)
T ss_dssp EECGGGSS---T------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHT
T ss_pred EechHHHc---C------CCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHh
Confidence 99998762 1 2378889999999999999999999999999999999998887776554
No 8
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.72 E-value=1.7e-17 Score=149.76 Aligned_cols=131 Identities=14% Similarity=0.201 Sum_probs=112.5
Q ss_pred hCcHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccc
Q 006911 352 NIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNG 431 (626)
Q Consensus 352 ~Lp~~Lr~ei~~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~ 431 (626)
++|..+|.+...+...++|+++++|.+++++.++.++..++.+.|.+|++|+++|+.++++|||.+|.|++.. ++.
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 5788888888888999999999999999999999999999999999999999999999999999999999965 232
Q ss_pred cceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHH
Q 006911 432 STRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAAL 498 (626)
Q Consensus 432 ~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~ 498 (626)
++..+++|++||+.+++ .+ .++.++++|.++|+++.|++++|.++++++|.+.+.
T Consensus 83 ---~~~~~~~G~~fGe~~~l---~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 ---KLCTMGPGKVFGELAIL---YN------CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp ---EEEEECTTCEESCHHHH---HC------CCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred ---EEEEeCCCCEeccHHHH---CC------CCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 35889999999999873 22 278889999999999999999999999999987653
No 9
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.72 E-value=9.7e-17 Score=145.97 Aligned_cols=133 Identities=20% Similarity=0.207 Sum_probs=117.3
Q ss_pred HHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecC-CccccceeeeeccCCCeE
Q 006911 367 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDFY 445 (626)
Q Consensus 367 ~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~~l~~G~~f 445 (626)
.++++++++|.+++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+. |++ .++..+++|++|
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~~g~~~ 80 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRE---NMLAVVGPSELI 80 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSE---EEEEEECTTCEE
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcE---EEEEEcCCcCEe
Confidence 3578899999999999999999999999999999999999999999999999999997653 333 467899999999
Q ss_pred ecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006911 446 GAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTRRK 511 (626)
Q Consensus 446 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~~~ 511 (626)
|+.+++ .+ .++.++++|.++|+++.|++++|.++++++|.+...+.+.+.+++.+..
T Consensus 81 G~~~~~---~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~ 137 (149)
T 2pqq_A 81 GELSLF---DP------GPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLRKTN 137 (149)
T ss_dssp SGGGGT---SC------EECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHHHH
T ss_pred chHHhc---CC------CCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 998763 21 2788899999999999999999999999999999999988888775543
No 10
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.71 E-value=1.1e-16 Score=152.40 Aligned_cols=150 Identities=14% Similarity=0.145 Sum_probs=124.4
Q ss_pred HHHHHhhCcHHH----HHHHHHHHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEE
Q 006911 346 IENLLNNIPKEL----GKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLW 421 (626)
Q Consensus 346 ~~~il~~Lp~~L----r~ei~~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~ 421 (626)
+....+.++|+| +.+...+...++|+++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 445555555443 3444556668899999999999999999999999999999999999999999999999999999
Q ss_pred EEEec-CCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHH
Q 006911 422 TYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVI 500 (626)
Q Consensus 422 v~~~~-~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~ 500 (626)
++..+ +|++ .++..+++|++||+.+++ .+ .++.++++|.++|+++.|++++|.++++++|.++..++
T Consensus 93 v~~~~~~g~~---~~~~~~~~G~~fGe~~~l---~~------~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~ 160 (187)
T 3gyd_A 93 VIKDIPNKGI---QTIAKVGAGAIIGEMSMI---DG------MPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVL 160 (187)
T ss_dssp EEEEETTTEE---EEEEEEETTCEESHHHHH---HC------CCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred EEEECCCCCe---EEEEEccCCCeeeeHHHh---CC------CCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 99765 3433 467899999999999863 22 27888999999999999999999999999999998888
Q ss_pred HHHHHHH
Q 006911 501 QLAWRHY 507 (626)
Q Consensus 501 ~~~~~~~ 507 (626)
+...+.+
T Consensus 161 ~~l~~~l 167 (187)
T 3gyd_A 161 IRLLQLL 167 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 11
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.71 E-value=6.3e-17 Score=154.61 Aligned_cols=150 Identities=11% Similarity=0.137 Sum_probs=119.2
Q ss_pred HHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEec-CCccccceeeeeccCCCe
Q 006911 366 CWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDF 444 (626)
Q Consensus 366 ~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~~l~~G~~ 444 (626)
+..++++++.|.+++++.++.++..++.+.|++|++|+++|+.++++|||.+|.|+++..+ +|++ .++..+++|++
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e---~~~~~~~~g~~ 81 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIE---QTTQFAIENWW 81 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCE---EEEEEEETTCE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCE---EEEEEccCCcE
Confidence 3567889999999999999999999999999999999999999999999999999999764 3443 46789999999
Q ss_pred Eecc-hhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHhCCCCCCC
Q 006911 445 YGAE-LVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYT---RRKFRFPKRRPS 520 (626)
Q Consensus 445 fGe~-~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 520 (626)
|||. ++ +.+ .++.++++|+++|+++.|++++|.++++++|.++..+.+...+++. ++.......+++
T Consensus 82 ~ge~~~~---~~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 152 (194)
T 3dn7_A 82 LSDYMAF---QKQ------QPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAAQLRSKFQHMYSKE 152 (194)
T ss_dssp ECCHHHH---HHT------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EeehHHH---hcC------CCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 9987 44 221 2778899999999999999999999999999999888887776663 344445556666
Q ss_pred ccchhhh
Q 006911 521 PLYVPLR 527 (626)
Q Consensus 521 ~~~~~l~ 527 (626)
+|+..+.
T Consensus 153 ~Rl~~~L 159 (194)
T 3dn7_A 153 EQYHNFS 159 (194)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 6765543
No 12
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.70 E-value=1.1e-16 Score=158.17 Aligned_cols=154 Identities=10% Similarity=0.117 Sum_probs=129.9
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEec-CCccccceeeeeccCC
Q 006911 364 ELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDS 442 (626)
Q Consensus 364 ~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~~l~~G 442 (626)
....++|+++|+|.+++++.++.++..++.+.|++|++|+++|+.++++|||.+|.|+++..+ +|++ .++..+++|
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~---~~~~~~~~G 83 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSE---AVVSVFTRG 83 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCE---EEEEEEETT
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCE---EEEEEeCCC
Confidence 344678999999999999999999999999999999999999999999999999999999754 3333 467899999
Q ss_pred CeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCC
Q 006911 443 DFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRP 519 (626)
Q Consensus 443 ~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~ 519 (626)
++||+.+++ .+ .++.++++|.++|+++.|++++|.++++++|.+...+++.+.+++.. +.......+.
T Consensus 84 ~~~G~~~~~---~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~ 154 (237)
T 3fx3_A 84 ESFGEAVAL---RN------TPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLVAQLEQLKAQTG 154 (237)
T ss_dssp EEECHHHHH---HT------CCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_pred CEechHHHh---cC------CCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 999999873 21 27788999999999999999999999999999999998888777643 4445666666
Q ss_pred Cccchhhhhh
Q 006911 520 SPLYVPLRDK 529 (626)
Q Consensus 520 ~~~~~~l~~~ 529 (626)
++|+..+...
T Consensus 155 ~~Rl~~~L~~ 164 (237)
T 3fx3_A 155 AQRVAEFLLE 164 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776655443
No 13
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.70 E-value=4.8e-17 Score=150.69 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeee
Q 006911 359 KKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDH 438 (626)
Q Consensus 359 ~ei~~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~ 438 (626)
.+-..+...++|+++++|.+++++.+..|+..++.+.|.+|++|+++|+.++++|||.+|.|+++...+|+. .++..
T Consensus 29 ~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~---~~~~~ 105 (161)
T 3idb_B 29 TDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVG---RCVGN 105 (161)
T ss_dssp CHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEE---EEEEE
T ss_pred CHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCe---EEEEE
Confidence 334445567899999999999999999999999999999999999999999999999999999997545544 46789
Q ss_pred ccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHH
Q 006911 439 LEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAAL 498 (626)
Q Consensus 439 l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~ 498 (626)
+++|++||+.+++ .+ .++.++++|.++|+++.|++++|.++++++|.+.+.
T Consensus 106 ~~~G~~fGe~~~~---~~------~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~ 156 (161)
T 3idb_B 106 YDNRGSFGELALM---YN------TPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 156 (161)
T ss_dssp EESCCEECGGGGT---CC------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCC
T ss_pred cCCCCEechHHHH---cC------CCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHH
Confidence 9999999999773 21 278889999999999999999999999999977543
No 14
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.70 E-value=4.8e-17 Score=177.91 Aligned_cols=114 Identities=11% Similarity=0.100 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhchHHHHhhcccCC
Q 006911 242 QKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPFQN 321 (626)
Q Consensus 242 ~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~ 321 (626)
..|..|+||+++|||||||||+.|.|..++++++++|++|.+++++.+|.+.+.++....+..+ ++..+.-++++....
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iicg~ 452 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSSPK 452 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC-----------------
T ss_pred cchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCEEEeCC
Confidence 4578899999999999999999999999999999999999999999999999887776543221 122222233444333
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCHHHHHhhCcHHHHHHHHHH
Q 006911 322 LSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRE 364 (626)
Q Consensus 322 l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~ 364 (626)
.|.....+ + .+.+....+.-..+|.+.++.++...
T Consensus 453 ~~~~~~l~--~------~~~~~~~~~s~~~el~e~~~~~~~~~ 487 (514)
T 2r9r_B 453 IPSSPDLK--K------SRSASTISKSDYMEIQEGVNNSNEDF 487 (514)
T ss_dssp -------------------------------------------
T ss_pred CccchhHH--h------cccCCCcccccccccccccccccccc
Confidence 33322211 1 11222334445566777776665543
No 15
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.69 E-value=3.3e-16 Score=143.35 Aligned_cols=129 Identities=14% Similarity=0.213 Sum_probs=112.7
Q ss_pred HHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecC-CccccceeeeeccCCCeE
Q 006911 367 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDFY 445 (626)
Q Consensus 367 ~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~~l~~G~~f 445 (626)
.++++++++|..++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+. |++ .++..+++|++|
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~~G~~~ 87 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQE---KILEVTNERNTF 87 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC--------CCEEECTTEEE
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCE---EEEEEccCCCee
Confidence 5689999999999999999999999999999999999999999999999999999996543 333 456899999999
Q ss_pred ecchhhhhhcccCccCccc-eeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006911 446 GAELVDWALRDCSLFEFSK-STKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY 507 (626)
Q Consensus 446 Ge~~l~~~l~~~~~~~~~~-~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~ 507 (626)
|+.+++ .+ .+ +.++++|.++|+++.|++++|.++++++|.+...+++.+.+++
T Consensus 88 G~~~~~---~~------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl 141 (154)
T 2z69_A 88 AEAMMF---MD------TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRL 141 (154)
T ss_dssp SGGGGG---SS------CSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccHhhc---cC------CCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 999763 21 14 8889999999999999999999999999999999888776665
No 16
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.68 E-value=2.2e-16 Score=141.86 Aligned_cols=125 Identities=21% Similarity=0.333 Sum_probs=111.4
Q ss_pred HHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 367 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 367 ~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
.++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ . ..+++|++||
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~------~~~~~G~~~G 80 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P------VELGPGAFFG 80 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C------EEECTTCEEC
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c------ceECCCCEee
Confidence 568999999999999999999999999999999999999999999999999999998543 1 4789999999
Q ss_pred cchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006911 447 AELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR 509 (626)
Q Consensus 447 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~ 509 (626)
+.+++ .+ .++.++++|.++|+++.|++++|.++++++|.+...+.+.+.+|+.+
T Consensus 81 ~~~~~---~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~~~ 134 (138)
T 1vp6_A 81 EMALI---SG------EPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGA 134 (138)
T ss_dssp HHHHH---HC------CCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC-
T ss_pred ehHhc---cC------CCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhhcc
Confidence 99773 22 26778999999999999999999999999999999998887777543
No 17
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.68 E-value=4e-17 Score=160.07 Aligned_cols=152 Identities=14% Similarity=0.178 Sum_probs=126.9
Q ss_pred HHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecC-CccccceeeeeccCCCeE
Q 006911 367 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDFY 445 (626)
Q Consensus 367 ~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~~l~~G~~f 445 (626)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|+.++++|||.+|.|+++..+. |++ .++..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~~G~~~ 81 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRE---NLLTIMGPSDMF 81 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCE---EEEEEECTTCEE
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcE---EEEEEecCCCEE
Confidence 4678999999999999999999999999999999999999999999999999999997653 433 467899999999
Q ss_pred ecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCCCcc
Q 006911 446 GAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPL 522 (626)
Q Consensus 446 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 522 (626)
|+.+++ .+ .++.++++|.++|+++.|++++|.++++++|.+...+.+.+.+++.. +.......+.++|
T Consensus 82 G~~~~~---~~------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~R 152 (227)
T 3d0s_A 82 GELSIF---DP------GPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGR 152 (227)
T ss_dssp SCHHHH---SC------SCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred eeHHHc---CC------CCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 999763 21 27888999999999999999999999999999999998888777643 3334445566666
Q ss_pred chhhhhhh
Q 006911 523 YVPLRDKV 530 (626)
Q Consensus 523 ~~~l~~~~ 530 (626)
+..+....
T Consensus 153 l~~~L~~l 160 (227)
T 3d0s_A 153 VAKQLLQL 160 (227)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65544433
No 18
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.67 E-value=9.7e-16 Score=148.77 Aligned_cols=146 Identities=14% Similarity=0.141 Sum_probs=119.1
Q ss_pred HhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEec-CCccccceeeeeccCCCeEecc
Q 006911 370 LKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAE 448 (626)
Q Consensus 370 L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~~l~~G~~fGe~ 448 (626)
|+++|+|.+++++.++.++..++.+.|++|++|+++|+.++++|||.+|.|+++..+ +|++ .++..+++|++||+.
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~~g~~~G~~ 77 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQE---RTLALLGPGELFGEM 77 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCE---EEEEEECTTCEECHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCE---EEEEEecCCCEEeeh
Confidence 568999999999999999999999999999999999999999999999999999764 3333 467899999999998
Q ss_pred hhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHhCCCCCCCccchh
Q 006911 449 LVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTRR---KFRFPKRRPSPLYVP 525 (626)
Q Consensus 449 ~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 525 (626)
+++ .+ .++.++++|.++|+++.|++++|.++++++|.+...+.+....++... .......+.++|+..
T Consensus 78 ~~~---~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rl~~ 148 (216)
T 4ev0_A 78 SLL---DE------GERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREADLELDLLSFEEARNRVAY 148 (216)
T ss_dssp HHH---HC------CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhc---CC------CCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 763 22 277889999999999999999999999999999998888887776432 223333444555544
Q ss_pred hh
Q 006911 526 LR 527 (626)
Q Consensus 526 l~ 527 (626)
+.
T Consensus 149 ~L 150 (216)
T 4ev0_A 149 AL 150 (216)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 19
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.65 E-value=2e-15 Score=148.59 Aligned_cols=150 Identities=11% Similarity=0.056 Sum_probs=123.9
Q ss_pred HHHHhhccccccCcHHHHHHHHhh--ccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCe
Q 006911 367 WHLLKKVHEFRMLKEETLDALCDC--VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDF 444 (626)
Q Consensus 367 ~~~L~~~~~F~~ls~~~l~~L~~~--l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~ 444 (626)
...++++|+|.+++++.++.++.. ++.+.|++|++|+++|+.++.+|||.+|.|+++..+.++.. .++..+++|++
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~--~~l~~~~~G~~ 94 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIY--TVIEQIEAPYL 94 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSC--EEEEEEESSEE
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCE--EEEEEccCCCe
Confidence 567899999999999999999998 99999999999999999999999999999999865432222 46789999999
Q ss_pred EecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hCCCCCCCc
Q 006911 445 YGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTRRKF---RFPKRRPSP 521 (626)
Q Consensus 445 fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 521 (626)
||+.+++ . +.+++.++++|.++|+++.|++++|.++++++|.+...+++.+.+++..... .....+.++
T Consensus 95 fG~~~~~---~-----~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~ 166 (232)
T 1zyb_A 95 IEPQSLF---G-----MNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKS 166 (232)
T ss_dssp ECGGGGS---S-----SCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHH
T ss_pred eeehHHh---C-----CCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence 9999762 1 1113788999999999999999999999999999999999988887755433 344444555
Q ss_pred cchhh
Q 006911 522 LYVPL 526 (626)
Q Consensus 522 ~~~~l 526 (626)
|+..+
T Consensus 167 Rl~~~ 171 (232)
T 1zyb_A 167 KIIRF 171 (232)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 20
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.65 E-value=1.1e-16 Score=143.79 Aligned_cols=126 Identities=37% Similarity=0.641 Sum_probs=102.5
Q ss_pred HHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeee--eccCCCeE
Q 006911 368 HLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRD--HLEDSDFY 445 (626)
Q Consensus 368 ~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~--~l~~G~~f 445 (626)
++|+++|+|.+++++.++.|+..++.+.|++|++|+++|+.++.+|||.+|.|++...+++++ .++. .+++|++|
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~---~~~~~~~l~~G~~f 82 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRS---GFYNRSLLKEGDFC 82 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSS---SSSCEEECCTTCBS
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcc---eeeeeeeecCCCEe
Confidence 457889999999999999999999999999999999999999999999999999764344444 2334 99999999
Q ss_pred ecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHH
Q 006911 446 GAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQA 496 (626)
Q Consensus 446 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~ 496 (626)
|+.++++.+.+.+....+++.++++|.++|+++.|++++|.++++++|.+.
T Consensus 83 Ge~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~ 133 (137)
T 1wgp_A 83 GDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSG 133 (137)
T ss_dssp STHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCT
T ss_pred cHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhH
Confidence 999752223322111111467899999999999999999999999998654
No 21
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.65 E-value=3.7e-16 Score=153.68 Aligned_cols=144 Identities=11% Similarity=0.165 Sum_probs=119.2
Q ss_pred hccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecC-CccccceeeeeccCCCeEecchh
Q 006911 372 KVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDFYGAELV 450 (626)
Q Consensus 372 ~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~~l~~G~~fGe~~l 450 (626)
++|+|.+++++.++.++..++.+.|++|++|+++|+.++++|||.+|.|+++..+. |++ .++..+++|++||+.++
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~---~~~~~~~~G~~~G~~~~ 90 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRF---HISRIVKPGQFFGMRPY 90 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CC---CEEEEECTTCEESHHHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCE---EEEEEeCCCCEeeeehh
Confidence 57899999999999999999999999999999999999999999999999995542 333 46789999999999977
Q ss_pred hhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCCCccchhhh
Q 006911 451 DWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPLYVPLR 527 (626)
Q Consensus 451 ~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~ 527 (626)
+ .+ .++.++++|.++|+++.|++++|.++++++|.+...+++.+.+++.. +.......+.++|+..+.
T Consensus 91 ~---~~------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L 161 (232)
T 2gau_A 91 F---AE------ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVTLTQKHVRGRLAETL 161 (232)
T ss_dssp H---HT------SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred h---CC------CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3 22 26788999999999999999999999999999999999888777643 333444556666666554
No 22
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.65 E-value=1.4e-15 Score=149.51 Aligned_cols=131 Identities=14% Similarity=0.177 Sum_probs=115.7
Q ss_pred HHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEec-CCccccceeeeeccCCCeE
Q 006911 367 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFY 445 (626)
Q Consensus 367 ~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~~l~~G~~f 445 (626)
.++|+++|+|.+++++.++.++..++.+.|++|++|+++|+.++++|||.+|.|+++..+ +|++ .++..+++|++|
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~~g~~~ 81 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRE---RVLGDIYAPGVV 81 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CE---EEEEEEESSEEE
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCce---EEEEecCCCCEE
Confidence 468899999999999999999999999999999999999999999999999999999765 3333 467899999999
Q ss_pred ecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006911 446 GAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR 509 (626)
Q Consensus 446 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~ 509 (626)
|+.+++ .+ .++.++++|.++|+++.|++++|.++++++|.+...+++.+.+++..
T Consensus 82 G~~~~~---~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~ 136 (231)
T 3e97_A 82 GETAVL---AH------QERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTF 136 (231)
T ss_dssp STTTTT---CC------CCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred eeHHHh---CC------CCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 999762 21 37888999999999999999999999999999999988888777643
No 23
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.65 E-value=7.8e-16 Score=149.91 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=123.2
Q ss_pred HHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecC-CccccceeeeeccCCCe--
Q 006911 368 HLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDF-- 444 (626)
Q Consensus 368 ~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~~l~~G~~-- 444 (626)
++|+++|+|.+++++.++.++..++.+.|++|++|+++|+.++++|||.+|.|+++..+. |++ .++..+++|++
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~---~~~~~~~~G~~~~ 79 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGRE---ITLYRLFDMDMCL 79 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCE---EEEEEECTTCEES
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCE---EEEEecCCCCeee
Confidence 578899999999999999999999999999999999999999999999999999997543 333 46789999999
Q ss_pred EecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCCCc
Q 006911 445 YGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSP 521 (626)
Q Consensus 445 fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 521 (626)
||+.+++ . ..++.++++|.++|+++.|++++|.++++++|.+...+.+...+++.. +.......+.++
T Consensus 80 ~g~~~~~---~------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 150 (220)
T 3dv8_A 80 LSASCIM---R------SIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLDK 150 (220)
T ss_dssp GGGGGGC---T------TCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHh---C------CCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 6887662 2 237888999999999999999999999999999999998887777643 333344555666
Q ss_pred cchhhhhh
Q 006911 522 LYVPLRDK 529 (626)
Q Consensus 522 ~~~~l~~~ 529 (626)
|+..+...
T Consensus 151 Rl~~~L~~ 158 (220)
T 3dv8_A 151 RVASFLLE 158 (220)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66554433
No 24
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.64 E-value=2.1e-16 Score=154.76 Aligned_cols=148 Identities=14% Similarity=0.193 Sum_probs=122.3
Q ss_pred HHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecC-CccccceeeeeccCCCeE
Q 006911 367 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDFY 445 (626)
Q Consensus 367 ~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~~l~~G~~f 445 (626)
.++|+++|+|.+++++.++.++..++.+.|++|++|+++|+.++++|||.+|.|+++..+. |++ .++..+++|++|
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~---~~~~~~~~g~~~ 84 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQE---KILEVTNERNTF 84 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCC---BCCCEECTTEEE
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCE---EEEEEcCCCCEe
Confidence 5689999999999999999999999999999999999999999999999999999986543 333 456899999999
Q ss_pred ecchhhhhhcccCccCccc-eeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHhCCCCCCCc
Q 006911 446 GAELVDWALRDCSLFEFSK-STKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTRR---KFRFPKRRPSP 521 (626)
Q Consensus 446 Ge~~l~~~l~~~~~~~~~~-~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 521 (626)
|+.+++ .+ .+ +.++++|.++|+++.|++++|.++++++|.+...+.+...+++... .......+.++
T Consensus 85 G~~~~~---~~------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 155 (227)
T 3dkw_A 85 AEAMMF---MD------TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIETLSLKNATH 155 (227)
T ss_dssp SCTTTT---TT------CSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHhc---CC------CCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 998762 11 25 7889999999999999999999999999999999888887776442 22233334455
Q ss_pred cchhh
Q 006911 522 LYVPL 526 (626)
Q Consensus 522 ~~~~l 526 (626)
|+..+
T Consensus 156 Rl~~~ 160 (227)
T 3dkw_A 156 RVVRY 160 (227)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 25
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.64 E-value=1.9e-15 Score=148.28 Aligned_cols=153 Identities=12% Similarity=0.108 Sum_probs=116.5
Q ss_pred HHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecC-CccccceeeeeccCCCeE
Q 006911 367 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDFY 445 (626)
Q Consensus 367 ~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~~l~~G~~f 445 (626)
...+++.++|.+++++.++.++..++.+.|++|++|+++|+.++++|||.+|.|+++..+. |++ .++..+++|++|
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~---~~~~~~~~g~~~ 86 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRE---LVLGYFGSGEFV 86 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCE---EEEEEECTTCEE
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCE---EEEEEecCCCEE
Confidence 4578899999999999999999999999999999999999999999999999999997553 333 467899999999
Q ss_pred ecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHh-----HHHHHHHHHHHHHHHHH---HHHhCCCC
Q 006911 446 GAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEK-----MNQAALVIQLAWRHYTR---RKFRFPKR 517 (626)
Q Consensus 446 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~-----p~~~~~~~~~~~~~~~~---~~~~~~~~ 517 (626)
|+.+++ . +..++.++++|.++|+++.|++++|.++++++ |.+...+.+.+.+++.. +.......
T Consensus 87 G~~~~~---~-----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~ 158 (230)
T 3iwz_A 87 GEMGLF---I-----ESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTRKASRLAFL 158 (230)
T ss_dssp SCGGGT---S-----CCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred Eehhhh---c-----CCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999763 1 11267889999999999999999999999999 99999998888777643 33345555
Q ss_pred CCCccchhhhhhh
Q 006911 518 RPSPLYVPLRDKV 530 (626)
Q Consensus 518 ~~~~~~~~l~~~~ 530 (626)
+.++|+..+....
T Consensus 159 ~~~~Rl~~~L~~l 171 (230)
T 3iwz_A 159 DVTDRIVRTLHDL 171 (230)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666665554433
No 26
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.63 E-value=1.9e-15 Score=138.84 Aligned_cols=118 Identities=16% Similarity=0.233 Sum_probs=104.0
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCC
Q 006911 364 ELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSD 443 (626)
Q Consensus 364 ~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~ 443 (626)
+...++|+++++|.+++++.+..++..++.+.|.+|++|+++|+.++++|||.+|.|+++. +++ .+..+++|+
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~-----~~~~~~~G~ 106 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE-----WATSVGEGG 106 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTE-----EEEEECTTC
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCE-----EEEEecCCC
Confidence 3446789999999999999999999999999999999999999999999999999999997 232 347899999
Q ss_pred eEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHH
Q 006911 444 FYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAA 497 (626)
Q Consensus 444 ~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~ 497 (626)
+||+.+++ .+ .++.++++|.++|+++.|++++|.++++++|...+
T Consensus 107 ~fGe~~~~---~~------~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 107 SFGELALI---YG------TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp EECCHHHH---HC------CCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred EeeehHhh---cC------CCcceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 99999873 22 27788999999999999999999999999987654
No 27
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.61 E-value=3.8e-15 Score=152.41 Aligned_cols=136 Identities=13% Similarity=0.167 Sum_probs=119.3
Q ss_pred HHHhhCcHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecC
Q 006911 348 NLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND 427 (626)
Q Consensus 348 ~il~~Lp~~Lr~ei~~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~ 427 (626)
.-..++|+..|.+...+...+.++++++|++++++.+..|+..++.+.|++|++|+++|+.++.+|||.+|.|++.. +
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~ 96 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--E 96 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--T
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--C
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999964 2
Q ss_pred CccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHH
Q 006911 428 LTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALV 499 (626)
Q Consensus 428 ~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~ 499 (626)
+ ..+..+++|++|||.+++ . ..++.++++|.++|+++.|++++|.+++.++|......
T Consensus 97 g-----~~~~~~~~G~~fGe~~ll---~------~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~ 154 (299)
T 3shr_A 97 G-----VKLCTMGPGKVFGELAIL---Y------NCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE 154 (299)
T ss_dssp T-----EEEEEECTTCEESCSGGG---T------TTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred C-----EEEEEeCCCCeeeHhHHh---c------CCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHH
Confidence 3 234789999999999873 2 13889999999999999999999999999999665433
No 28
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.60 E-value=6.3e-15 Score=153.29 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=114.9
Q ss_pred HHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 367 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 367 ~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
.++|+++|+|++++++.+..|+..++.+.|++|++|+++|+.++++|||.+|.|+++..++++. .++..+++|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~---~~~~~~~~G~~fG 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGV---AIIARALPGMIVG 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCC---EEEEEECTTCEES
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCc---EEEEEecCCCEee
Confidence 4789999999999999999999999999999999999999999999999999999997654333 2458899999999
Q ss_pred cchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006911 447 AELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYT 508 (626)
Q Consensus 447 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~ 508 (626)
|.+++ .+ .+++++++|+++|+++.|++++|.+++ ++|.+...+++.+.++..
T Consensus 89 e~~l~---~~------~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~ 140 (333)
T 4ava_A 89 EIALL---RD------SPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA 140 (333)
T ss_dssp HHHHH---HT------CBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred HHHhc---CC------CCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 99873 22 278899999999999999999999999 999999999888777665
No 29
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.60 E-value=4.5e-16 Score=151.83 Aligned_cols=145 Identities=9% Similarity=0.067 Sum_probs=120.2
Q ss_pred HHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 368 HLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 368 ~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
.+|+++|+|.+++++.+..++..++.+.|++|++|+++|+.++++|||.+|.|+++...+|++ .++..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~---~~~~~~~~G~~~G~ 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKE---FTLAILEAGDIFCT 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCE---EEEEEEETTCEEES
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCE---EEEEEcCCCCEeCC
Confidence 467889999999999999999999999999999999999999999999999999964444444 46789999999998
Q ss_pred chhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCCCccch
Q 006911 448 ELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPLYV 524 (626)
Q Consensus 448 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 524 (626)
++.++++|.++|+++.|++++|.++++++|.+...+++...+++.. +.......+.++|+.
T Consensus 81 ----------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rl~ 144 (220)
T 2fmy_A 81 ----------------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTIINGLVFKDARLRLA 144 (220)
T ss_dssp ----------------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred ----------------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2345899999999999999999999999999999998888777633 333444555666665
Q ss_pred hhhhhhh
Q 006911 525 PLRDKVK 531 (626)
Q Consensus 525 ~l~~~~~ 531 (626)
.+.....
T Consensus 145 ~~L~~l~ 151 (220)
T 2fmy_A 145 EFLVQAA 151 (220)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
No 30
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.60 E-value=1e-15 Score=137.23 Aligned_cols=92 Identities=7% Similarity=0.144 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhchHHHHhhcccCCCC
Q 006911 244 LLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPFQNLS 323 (626)
Q Consensus 244 Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~ 323 (626)
|..|+||+++|||||||||++|.|..|+++++++|++|++++|+++|.+++.+.+......+.++.....+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 78899999999999999999999999999999999999999999999999988776554444333333333344455667
Q ss_pred HHHHHHHHHHHH
Q 006911 324 ANLQQEMKKYKP 335 (626)
Q Consensus 324 ~~l~~rv~~y~~ 335 (626)
++.+..+++|++
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 777666766654
No 31
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.59 E-value=2.5e-15 Score=137.12 Aligned_cols=63 Identities=11% Similarity=0.331 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006911 242 QKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLK 304 (626)
Q Consensus 242 ~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~~ 304 (626)
..|..|+||+++|||||||||++|.|..+++++++++++|..++|+.+|.+++.+.+...++.
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~ 145 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERR 145 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC---
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999988655443
No 32
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.59 E-value=6.5e-16 Score=150.99 Aligned_cols=141 Identities=11% Similarity=0.014 Sum_probs=117.2
Q ss_pred HHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecc
Q 006911 369 LLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 448 (626)
Q Consensus 369 ~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 448 (626)
+|+++|+|.+++++.++.++..++.+.|++|++|+++|+.++++|||.+|.|+++...+|++ .++..+++|++|| .
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~---~~~~~~~~G~~fG-~ 76 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEERE---ISLFYLTSGDMFC-M 76 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEE---EEEEEEETTCEEE-S
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCE---EEEEEcCCCCEec-C
Confidence 46789999999999999999999999999999999999999999999999999974344544 4678999999999 1
Q ss_pred hhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCCCccchh
Q 006911 449 LVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPLYVP 525 (626)
Q Consensus 449 ~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 525 (626)
++.++++|.++|+++.|++++|.++++++|.+...+++.+.+++.. +.......+.++|+..
T Consensus 77 ---------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~ 141 (222)
T 1ft9_A 77 ---------------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMRTIEDLMFHDIKQRIAG 141 (222)
T ss_dssp ---------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ---------------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 5677999999999999999999999999999999988888777633 2333444455556554
Q ss_pred hhh
Q 006911 526 LRD 528 (626)
Q Consensus 526 l~~ 528 (626)
+..
T Consensus 142 ~L~ 144 (222)
T 1ft9_A 142 FFI 144 (222)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 33
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.59 E-value=4.6e-15 Score=151.81 Aligned_cols=135 Identities=19% Similarity=0.240 Sum_probs=119.5
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEec--CCccccceeeeeccC
Q 006911 364 ELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN--DLTNGSTRKRDHLED 441 (626)
Q Consensus 364 ~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~--~~~~~~~~~~~~l~~ 441 (626)
..+..+++++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ +|+. .++..+++
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~---~~~~~l~~ 229 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDP---VFLRTLGK 229 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCC---EEEEEEET
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcc---eEEEEcCC
Confidence 445778999999999999999999999999999999999999999999999999999999765 3333 46789999
Q ss_pred CCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006911 442 SDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTRR 510 (626)
Q Consensus 442 G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~~ 510 (626)
|++|||.+++ .+ .++.++++|.++|+++.|++++|.++++++|.+...+++.+.++++..
T Consensus 230 G~~fGe~~ll---~~------~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~ 289 (299)
T 3shr_A 230 GDWFGEKALQ---GE------DVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYE 289 (299)
T ss_dssp TCEECGGGGS---SS------EECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred CCEeChHHHh---CC------CCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcc
Confidence 9999999873 21 388899999999999999999999999999999999998888877543
No 34
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.59 E-value=9.9e-15 Score=132.99 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHH----hhHHHHHHHhchHHH
Q 006911 244 LLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQI------YLQS----RTVRLKEMTVKPREI 313 (626)
Q Consensus 244 Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~------i~~~----~~~~~~~~~~~~~~i 313 (626)
|..|+||+++|+|||||||++|.|..+++++++.+++|+.+++++++.+++ +... .+....+..++++.+
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999999999999999999999986 3333 255566667788999
Q ss_pred HhhcccCCCCHHHHHH
Q 006911 314 EEWKPFQNLSANLQQE 329 (626)
Q Consensus 314 ~~~m~~~~l~~~l~~r 329 (626)
++++++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999875
No 35
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.58 E-value=9.2e-15 Score=128.35 Aligned_cols=60 Identities=12% Similarity=0.322 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006911 242 QKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTV 301 (626)
Q Consensus 242 ~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~ 301 (626)
..|..|+||+++|+|||||||++|.|..+++++++++++|..++|+.+|.+++.+.+..+
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999999999999999999999999999999999987544
No 36
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.57 E-value=9.2e-16 Score=137.36 Aligned_cols=122 Identities=11% Similarity=0.123 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHhhccccccCcHHHHHHHHhhccceeeC-CCcEEEccCCccCEEEEEEEceEEEEEecCCccccce
Q 006911 356 ELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFT-EHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTR 434 (626)
Q Consensus 356 ~Lr~ei~~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~-~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~ 434 (626)
+.|.+-......++|+++++|..++++.++.|+..++.+.|. +|++|+++|+.++.+|||.+|.|+++..+ ++.
T Consensus 4 ~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-g~~---- 78 (134)
T 2d93_A 4 GSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPD-GKV---- 78 (134)
T ss_dssp SCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSS-SCE----
T ss_pred hhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCC-CcE----
Confidence 333333344446789999999999999999999999999999 99999999999999999999999998633 332
Q ss_pred eeeeccCCCeEecchhhhhhcccCccCccceeeEE-EeccceeeEEeCHHHHHHHHHHhH
Q 006911 435 KRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTI-EALTNIEAFTLMADDLKIVFNEKM 493 (626)
Q Consensus 435 ~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv-~A~~~~~ll~l~~~~f~~ll~~~p 493 (626)
..+++|++||+.+++ . ..++.+++ +|.++|+++.|++++|.+++++.+
T Consensus 79 --~~l~~G~~fG~~~~~---~------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 --ENLFMGNSFGITPTL---D------KQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp --EEECTTCEESCCSSS---C------CEECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred --EEecCCCccChhHhc---C------CCcceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 468999999998762 2 12677788 999999999999999999987654
No 37
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.56 E-value=1.7e-14 Score=139.33 Aligned_cols=145 Identities=10% Similarity=0.051 Sum_probs=114.9
Q ss_pred cccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEec-CCccccceeeeeccCCCeEecchhhh
Q 006911 374 HEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDW 452 (626)
Q Consensus 374 ~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~~l~~G~~fGe~~l~~ 452 (626)
++++.++++.++.++..++.+.|++|++|+++|+.++++|||.+|.|+++..+ +|++ .++..+++|++||+.+++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~~g~~~G~~~~~- 77 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKE---MILSYLNQGDFIGELGLF- 77 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCE---EEEEEEETTCEESCTTTT-
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCE---EEEEEcCCCCEeeeHHHh-
Confidence 45677999999999999999999999999999999999999999999999764 3433 467899999999999763
Q ss_pred hhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCCCccchhhhhh
Q 006911 453 ALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPLYVPLRDK 529 (626)
Q Consensus 453 ~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~ 529 (626)
. +..++.++++|.++|+++.|++++|.++++++|.+...+.+.+.+++.. +.......+.++|+..+...
T Consensus 78 --~-----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~ 150 (210)
T 3ryp_A 78 --E-----EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLN 150 (210)
T ss_dssp --S-----TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred --c-----CCCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 1 1126788999999999999999999999999999999988888777643 23334445556665554333
No 38
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.56 E-value=2.9e-14 Score=137.34 Aligned_cols=139 Identities=14% Similarity=0.099 Sum_probs=112.6
Q ss_pred CcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecC-CccccceeeeeccCCCeEecchhhhhhccc
Q 006911 379 LKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDFYGAELVDWALRDC 457 (626)
Q Consensus 379 ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~ 457 (626)
||++.++.++..++.+.|++|++|+++|+.++++|||.+|.|+++..+. |++ .++..+++|++||+.+++ .
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~---~~~~~~~~g~~~G~~~~~---~-- 72 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGRE---MIIGYLNSGDFFGELGLF---E-- 72 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCE---EEEEEEETTCEESCTTTC---C--
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCE---EEEEEcCCCCCcccHHHh---c--
Confidence 5889999999999999999999999999999999999999999997653 433 467899999999998763 1
Q ss_pred CccCcc---ceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCCCccchhhhh
Q 006911 458 SLFEFS---KSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPLYVPLRD 528 (626)
Q Consensus 458 ~~~~~~---~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~ 528 (626)
+.. ++.++++|.++|+++.|++++|.++++++|.+...+++.+.+++.. +.......+.++|+..+..
T Consensus 73 ---~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~Rl~~~L~ 146 (207)
T 2oz6_A 73 ---KEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLL 146 (207)
T ss_dssp --------CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ---CCCCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111 5778999999999999999999999999999999888887776633 3333444555666554433
No 39
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.55 E-value=1.7e-14 Score=139.93 Aligned_cols=145 Identities=11% Similarity=0.160 Sum_probs=105.8
Q ss_pred hccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEec-CCccccceeeeeccCCCeEecchh
Q 006911 372 KVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELV 450 (626)
Q Consensus 372 ~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~~l~~G~~fGe~~l 450 (626)
.-|+|...++.....+...++.+.|++|++|+++|+.++++|||.+|.|+++..+ +|++ .++..+++|++||+.++
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~---~~~~~~~~G~~~G~~~~ 79 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKT---LEIDEIKPVQIIASGFI 79 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCE---EEEEEECSSEESSGGGT
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCE---EEEEEecCCCEeeeHHH
Confidence 3478889999999999999999999999999999999999999999999999764 3443 46789999999999976
Q ss_pred hhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCCCccchhhh
Q 006911 451 DWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPLYVPLR 527 (626)
Q Consensus 451 ~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~ 527 (626)
+ . +..++.++++|.++|+++.|++++|.++++++|.+...+++...+++.. +.......+.++|+..+.
T Consensus 80 ~---~-----~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rl~~~L 151 (213)
T 1o5l_A 80 F---S-----SEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSEKLFFLTTKTLREKLMNFL 151 (213)
T ss_dssp T---S-----SSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred h---c-----CCCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 2 1 1126788999999999999999999999999999998888887776633 333455666667765543
No 40
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.54 E-value=8e-15 Score=146.01 Aligned_cols=149 Identities=12% Similarity=0.098 Sum_probs=121.8
Q ss_pred HHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEec-CCccccceeeeeccCCCeEec
Q 006911 369 LLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 369 ~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~~l~~G~~fGe 447 (626)
++.+...+..++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +|++ .++..+++|++||+
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~---~~~~~~~~G~~~G~ 86 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSE---KLLYYAGGNSLIGK 86 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCE---EEEEEECTTCEECC
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCE---EEEEEecCCCEEee
Confidence 4455556689999999999999999999999999999999999999999999999764 3433 46789999999999
Q ss_pred chhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCCCccch
Q 006911 448 ELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPLYV 524 (626)
Q Consensus 448 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 524 (626)
.+ . .. +.++++|.++|+++.|++++|.++++++|.+...+.+.+.+++.. +.......+.++|+.
T Consensus 87 -~l----~------~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~Rl~ 154 (250)
T 3e6c_C 87 -LY----P------TG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTIRIL 154 (250)
T ss_dssp -CS----C------CS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred -ec----C------CC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 33 1 12 667999999999999999999999999999999999888777643 344456666777776
Q ss_pred hhhhhhhh
Q 006911 525 PLRDKVKE 532 (626)
Q Consensus 525 ~l~~~~~~ 532 (626)
.+......
T Consensus 155 ~~L~~l~~ 162 (250)
T 3e6c_C 155 RLFYELCS 162 (250)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65544433
No 41
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.52 E-value=8.5e-14 Score=141.65 Aligned_cols=128 Identities=18% Similarity=0.236 Sum_probs=110.0
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEec-CCccccceeeeeccCC
Q 006911 364 ELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDS 442 (626)
Q Consensus 364 ~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~~l~~G 442 (626)
.+...+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++... ++++. ..+..+++|
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~--~~~~~l~~G 230 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEF--VEVGRLGPS 230 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCE--EEEEEECTT
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCcc--EEEEEeCCC
Confidence 344567889999999999999999999999999999999999999999999999999998654 22221 456899999
Q ss_pred CeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHH
Q 006911 443 DFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQL 502 (626)
Q Consensus 443 ~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~ 502 (626)
++|||.+++ .+ .++.++++|.++|+++.|++++|.+++.++|.+....++.
T Consensus 231 ~~fGe~~ll---~~------~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~ 281 (291)
T 2qcs_B 231 DYFGEIALL---MN------RPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQ 281 (291)
T ss_dssp CEECSGGGT---CC------CCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHH
T ss_pred CEecHHHHc---CC------CCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHH
Confidence 999999873 21 2788999999999999999999999999999877665554
No 42
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.52 E-value=1.2e-13 Score=140.46 Aligned_cols=126 Identities=16% Similarity=0.205 Sum_probs=110.1
Q ss_pred HHHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCC
Q 006911 363 RELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDS 442 (626)
Q Consensus 363 ~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G 442 (626)
.+...++|+++++|.+++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++. + +. .+..+++|
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~-g~-----~~~~l~~G 106 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-N-NE-----WATSVGEG 106 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-T-TE-----EEEEECTT
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-C-Ce-----EEEEcCCC
Confidence 34457789999999999999999999999999999999999999999999999999999987 3 32 34789999
Q ss_pred CeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHH
Q 006911 443 DFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAW 504 (626)
Q Consensus 443 ~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~ 504 (626)
++|||.+++ .+ .++.++++|.++|+++.|++++|.+++.++|.+.........
T Consensus 107 ~~fGe~~l~---~~------~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 159 (291)
T 2qcs_B 107 GSFGELALI---YG------TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFL 159 (291)
T ss_dssp CEECGGGGT---CC------CBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHh---cC------CCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHH
Confidence 999998763 21 278899999999999999999999999999988776665443
No 43
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.51 E-value=6.3e-14 Score=138.60 Aligned_cols=117 Identities=19% Similarity=0.257 Sum_probs=104.6
Q ss_pred HHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCe
Q 006911 365 LCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDF 444 (626)
Q Consensus 365 ~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~ 444 (626)
++..+++++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+++ ++..+++|++
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~------~~~~l~~g~~ 195 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG------VINKLKDHDY 195 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE------EEEEEETTCE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc------eEEEcCCCCc
Confidence 3456788999999999999999999999999999999999999999999999999999975433 3478999999
Q ss_pred EecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHH
Q 006911 445 YGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQA 496 (626)
Q Consensus 445 fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~ 496 (626)
|||.+++ .+ .+|.++++|.++|+++.|++++|.+++..+|++.
T Consensus 196 fGe~~~~---~~------~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~ 238 (246)
T 3of1_A 196 FGEVALL---ND------LPRQATVTATKRTKVATLGKSGFQRLLGPAVDVL 238 (246)
T ss_dssp ECHHHHH---HT------CBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHH
T ss_pred ccHHHHh---CC------CCcccEEEECCCEEEEEEeHHHHHHHhccHHHHH
Confidence 9999873 22 2888999999999999999999999999998764
No 44
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.51 E-value=7e-14 Score=140.14 Aligned_cols=144 Identities=10% Similarity=0.073 Sum_probs=114.3
Q ss_pred ccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEec-CCccccceeeeeccCCCeEecchhhhhhc
Q 006911 377 RMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWALR 455 (626)
Q Consensus 377 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~~l~~G~~fGe~~l~~~l~ 455 (626)
..++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +|++ .++..+++|++||+.+++ .
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e---~~~~~~~~G~~~Ge~~~~---~ 128 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKE---MILSYLNQGDFIGELGLF---E 128 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCE---EEEEEEETTCEESCTTTT---S
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCE---EEEEEcCCCCEEeehHHh---C
Confidence 55899999999999999999999999999999999999999999999764 3433 467899999999999763 1
Q ss_pred ccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCCCccchhhhhhhh
Q 006911 456 DCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPLYVPLRDKVK 531 (626)
Q Consensus 456 ~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~ 531 (626)
+..++.++++|.++|+++.|++++|.++++++|.+...+++.+..++.. +.......+.++|+..+.....
T Consensus 129 -----~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~ 202 (260)
T 3kcc_A 129 -----EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLLVTGRIAQTLLNLA 202 (260)
T ss_dssp -----TTCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred -----CCCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1126788999999999999999999999999999999888888777643 3334445556666655444333
No 45
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.51 E-value=3.6e-14 Score=140.33 Aligned_cols=120 Identities=17% Similarity=0.200 Sum_probs=105.2
Q ss_pred HHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeE
Q 006911 366 CWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFY 445 (626)
Q Consensus 366 ~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~f 445 (626)
..++|+++++|.+++++.+..++..++.+.|++|++|+++|+.++++|||.+|.|+++. + ++ .+..+++|++|
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~-~-~~-----~~~~~~~g~~f 77 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV-N-DN-----KVNSSGPGSSF 77 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES-T-TS-----CCEEECTTCEE
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE-C-CE-----EEEecCCCCee
Confidence 36789999999999999999999999999999999999999999999999999999985 2 22 23789999999
Q ss_pred ecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHH
Q 006911 446 GAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQ 501 (626)
Q Consensus 446 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~ 501 (626)
||.+++ .+ .++.++++|.++|+++.|++++|.+++.++|...+....
T Consensus 78 Ge~~l~---~~------~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 124 (246)
T 3of1_A 78 GELALM---YN------SPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYD 124 (246)
T ss_dssp CHHHHH---HT------CCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSH
T ss_pred ehhHHh---cC------CCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHH
Confidence 999874 22 278899999999999999999999999999976654443
No 46
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.51 E-value=8.5e-14 Score=149.19 Aligned_cols=123 Identities=17% Similarity=0.204 Sum_probs=108.8
Q ss_pred HHHHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccC
Q 006911 362 KRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLED 441 (626)
Q Consensus 362 ~~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~ 441 (626)
..+...+.|+++++|++++++.+..|+..++.+.|.+|++|+++|+.++.+|||.+|.|+++...+|+. .++..+++
T Consensus 139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~---~~v~~l~~ 215 (416)
T 3tnp_B 139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVG---RCVGNYDN 215 (416)
T ss_dssp HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCE---EEEEEEES
T ss_pred HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCE---EEEEEecC
Confidence 344557889999999999999999999999999999999999999999999999999999997544544 45689999
Q ss_pred CCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHH
Q 006911 442 SDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQA 496 (626)
Q Consensus 442 G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~ 496 (626)
|++|||.+++ . ..++.++++|.++|+++.|++++|.+++.++|.+.
T Consensus 216 G~~fGe~all---~------~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~ 261 (416)
T 3tnp_B 216 RGSFGELALM---Y------NTPKAATITATSPGALWGLDRVTFRRIIVKNNAKK 261 (416)
T ss_dssp CCEECGGGGT---S------CCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCEEeeHHHh---c------CCCcccEEEEccCeEEEEEeehhhhhhhhcchhHH
Confidence 9999999873 2 13889999999999999999999999999998764
No 47
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.51 E-value=5.4e-14 Score=149.08 Aligned_cols=129 Identities=17% Similarity=0.205 Sum_probs=112.1
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecC-CccccceeeeeccCC
Q 006911 364 ELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDS 442 (626)
Q Consensus 364 ~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~~l~~G 442 (626)
.++..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+. +++. .++..+++|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~--~~v~~l~~G 321 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEY--VEVGRLGPS 321 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCC--CEEEEECTT
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCce--EEEEEeCCC
Confidence 4556788999999999999999999999999999999999999999999999999999996542 2222 457899999
Q ss_pred CeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHH
Q 006911 443 DFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLA 503 (626)
Q Consensus 443 ~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~ 503 (626)
++|||.+++ .+ .+|.++++|.++|+++.|++++|.+++..+|.+.+..++..
T Consensus 322 d~fGe~all---~~------~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~ 373 (381)
T 4din_B 322 DYFGEIALL---LN------RPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY 373 (381)
T ss_dssp CEECTTGGG---SC------CBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred CEechHHHh---CC------CCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999873 22 28899999999999999999999999999998877666543
No 48
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.48 E-value=1.2e-13 Score=136.86 Aligned_cols=141 Identities=12% Similarity=0.119 Sum_probs=111.9
Q ss_pred HHHHHHHHhhcc---ceeeCCCcEEEccCCccCEEEEEEEceEEEEEecC-CccccceeeeeccCCCeEecchhhhhhcc
Q 006911 381 EETLDALCDCVK---PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDFYGAELVDWALRD 456 (626)
Q Consensus 381 ~~~l~~L~~~l~---~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~~l~~G~~fGe~~l~~~l~~ 456 (626)
+++++.|+.... .+.|++|++|+++|+.++.+|||.+|.|+++..+. |++ .++..+++|++||+.+++ .+
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~---~~l~~~~~g~~~G~~~~~---~~ 103 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEE---ITVALLRENSVFGVLSLL---TG 103 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCE---EEEEEECTTCEESCHHHH---SS
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCE---EEEEEecCCCEEcchHHh---CC
Confidence 678888888888 99999999999999999999999999999997543 333 467899999999998763 21
Q ss_pred cCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCCCccchhhhhhhh
Q 006911 457 CSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPLYVPLRDKVK 531 (626)
Q Consensus 457 ~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~ 531 (626)
. ..++.++++|.++|+++.|++++|.++++++|.+...+++.+..++.. +.......+.++|+..+.....
T Consensus 104 ~----~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~L~~l~ 177 (243)
T 3la7_A 104 N----KSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETLAHRDMGSRLVSFLLILC 177 (243)
T ss_dssp C----CSBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred C----CCcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1 013457999999999999999999999999999999998887777643 3334555566666655544433
No 49
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=145.85 Aligned_cols=124 Identities=14% Similarity=0.176 Sum_probs=108.8
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCC
Q 006911 364 ELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSD 443 (626)
Q Consensus 364 ~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~ 443 (626)
+...++|+++++|++++++.+..|+..++.+.|.+|++|+++|+.++.+|+|.+|.|+++. +++ .+..+++|+
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~-----~v~~l~~G~ 198 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGE-----WVTNISEGG 198 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTE-----EEEEEESSC
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCe-----EeeeCCCCC
Confidence 4456889999999999999999999999999999999999999999999999999999996 232 347899999
Q ss_pred eEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHH
Q 006911 444 FYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLA 503 (626)
Q Consensus 444 ~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~ 503 (626)
+|||.+++ .+ .++.++++|.++|+++.|++++|.+++.++|...+......
T Consensus 199 ~fGe~all---~~------~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~ 249 (381)
T 4din_B 199 SFGELALI---YG------TPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEF 249 (381)
T ss_dssp CBCGGGGT---SC------CBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEchHHh---cC------CCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHH
Confidence 99999873 21 28889999999999999999999999999998877655443
No 50
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.47 E-value=8.2e-14 Score=125.55 Aligned_cols=59 Identities=14% Similarity=0.390 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006911 243 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTV 301 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~ 301 (626)
.|..|+||+++|+|||||||++|.|..+++++++.+++|+++++++++.+++.+.+...
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999988866443
No 51
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.45 E-value=2.6e-13 Score=133.98 Aligned_cols=141 Identities=14% Similarity=0.120 Sum_probs=108.1
Q ss_pred ccCcHHHHHHHHh--hccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecC-CccccceeeeeccCCCeEecchhhhh
Q 006911 377 RMLKEETLDALCD--CVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDFYGAELVDWA 453 (626)
Q Consensus 377 ~~ls~~~l~~L~~--~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~~l~~G~~fGe~~l~~~ 453 (626)
++++++.+..+.. .++.+.|++|++|+++|+.++++|||.+|.|+++..+. |++ .++..+ +|++||+.+++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e---~~~~~~-~G~~~Ge~~~~-- 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTI---MNLQYY-KGAFVIMSGFI-- 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCE---EEEEEE-ESSEEEESBCT--
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCE---EEEEEc-CCCEecchhhh--
Confidence 3688999999885 59999999999999999999999999999999997543 333 456778 99999999763
Q ss_pred hcccCccCccc-eeeEEEec-cceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCCCccchhhhh
Q 006911 454 LRDCSLFEFSK-STKTIEAL-TNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPLYVPLRD 528 (626)
Q Consensus 454 l~~~~~~~~~~-~~~tv~A~-~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~ 528 (626)
.+. ++ +..++.|. ++|+++.|++++|.++++++|.+...+++.+.+++.. +.......+.++|+..+..
T Consensus 76 -~~~-----~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rla~~L~ 149 (238)
T 2bgc_A 76 -DTE-----TSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICSQLL 149 (238)
T ss_dssp -TTC-----CBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred -cCC-----CcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 111 11 25577777 5999999999999999999999999998888777633 3334445555666655443
Q ss_pred h
Q 006911 529 K 529 (626)
Q Consensus 529 ~ 529 (626)
.
T Consensus 150 ~ 150 (238)
T 2bgc_A 150 I 150 (238)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.45 E-value=1.5e-13 Score=147.35 Aligned_cols=130 Identities=10% Similarity=0.128 Sum_probs=106.3
Q ss_pred HHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecC-------Cccccceeeee
Q 006911 366 CWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-------LTNGSTRKRDH 438 (626)
Q Consensus 366 ~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~-------~~~~~~~~~~~ 438 (626)
+..+++++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+. ++. .++..
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~---~~l~~ 341 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGA---VEIAR 341 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC---------------CEEEE
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCce---eEEEE
Confidence 34578889999999999999999999999999999999999999999999999999985443 322 46789
Q ss_pred ccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006911 439 LEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY 507 (626)
Q Consensus 439 l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~ 507 (626)
+++|++|||.+++ . ..++.++++|.++|+++.|++++|.+++..+|.+....++...+++
T Consensus 342 l~~G~~fGE~all---~------~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L 401 (416)
T 3tnp_B 342 CFRGQYFGELALV---T------NKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQL 401 (416)
T ss_dssp ECTTCEESGGGGT---C------CSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC--------
T ss_pred eCCCCEecHHHHh---C------CCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 9999999999873 2 2388999999999999999999999999999988776666555544
No 53
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.45 E-value=2e-13 Score=148.79 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=117.6
Q ss_pred CcHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecC-Cccc
Q 006911 353 IPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-LTNG 431 (626)
Q Consensus 353 Lp~~Lr~ei~~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~-~~~~ 431 (626)
.|+..|.+-..+...+.|+++++|.+++++.+..|+..++.+.|++|++|+++|+.++.+|||.+|.|+++..+. |+..
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 567778777778888999999999999999999999999999999999999999999999999999999997543 2211
Q ss_pred cceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHH
Q 006911 432 STRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVI 500 (626)
Q Consensus 432 ~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~ 500 (626)
- .++..+++|++||+.+ +. ..++.++++|.++|+++.|++++|.++++++|.+...++
T Consensus 107 ~-~~~~~~~~G~~fGe~~-l~---------~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~ 164 (469)
T 1o7f_A 107 A-VTICTLGIGTAFGESI-LD---------NTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLL 164 (469)
T ss_dssp C-EEEEEECTTCEECGGG-GG---------TCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTS
T ss_pred c-eEEEEccCCCCcchhh-hC---------CCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHH
Confidence 1 4668999999999986 31 127889999999999999999999999999997654443
No 54
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.39 E-value=7e-13 Score=144.47 Aligned_cols=124 Identities=10% Similarity=0.143 Sum_probs=103.0
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHhhccc-eeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCC
Q 006911 364 ELCWHLLKKVHEFRMLKEETLDALCDCVKP-TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDS 442 (626)
Q Consensus 364 ~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~-~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G 442 (626)
+...+.++++++|.+++++.+..++..++. +.|.+|++|+++|+.++.+|||.+|.|+++..++ . ++..+++|
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~--~----~~~~l~~G 406 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK--G----VVCTLHEG 406 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT--E----EEEEEETT
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC--e----eEEEecCC
Confidence 344678999999999999999999999985 4899999999999999999999999999987432 1 35899999
Q ss_pred CeEecchhhhhhcccCccCccceeeEEEecc-ceeeEEeCHHHHHHHHHHhHHHHHHHHHH
Q 006911 443 DFYGAELVDWALRDCSLFEFSKSTKTIEALT-NIEAFTLMADDLKIVFNEKMNQAALVIQL 502 (626)
Q Consensus 443 ~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~-~~~ll~l~~~~f~~ll~~~p~~~~~~~~~ 502 (626)
++|||.+++ . ..++.++++|.+ +|+++.|++++|.++++++|.+...+.+.
T Consensus 407 ~~fGe~~ll---~------~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~ 458 (469)
T 1o7f_A 407 DDFGKLALV---N------DAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEH 458 (469)
T ss_dssp CEECGGGGT---C------CSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-------
T ss_pred CEEEEehhh---c------CCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhc
Confidence 999999873 2 238899999998 79999999999999999999887665554
No 55
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.36 E-value=6.1e-12 Score=108.75 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006911 243 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVR 302 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~ 302 (626)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.+++.++..+..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~ 108 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 108 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999888554433
No 56
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.34 E-value=3.6e-12 Score=151.61 Aligned_cols=136 Identities=16% Similarity=0.195 Sum_probs=109.2
Q ss_pred HHhhCcHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHhhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCC
Q 006911 349 LLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDL 428 (626)
Q Consensus 349 il~~Lp~~Lr~ei~~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~ 428 (626)
.++.-| .-|.+=-.++-...|+++++|+++++..+.+|+..|+.+.|.+|++|+++||.++++|+|.+|.|.|+..+.+
T Consensus 24 ~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 24 CLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp HHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred HhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 344433 3343333334456799999999999999999999999999999999999999999999999999999975422
Q ss_pred ccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHHHHHHHHHHhHHH
Q 006911 429 TNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQ 495 (626)
Q Consensus 429 ~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~ 495 (626)
......++..+++|+.||| +++ .+ .||+++++|.++|+++.|++++|..++.++|+.
T Consensus 103 ~~~~~~~v~~l~~G~sFGE-all---~n------~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~ 159 (999)
T 4f7z_A 103 SHQDAVTICTLGIGTAFGE-SIL---DN------TPRHATIVTRESSELLRIEQEDFKALWEKYRQY 159 (999)
T ss_dssp CTTSCEEEEEEETTCEECG-GGG---GT------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHH
T ss_pred CCCCceeEEEecCCcchhh-hhc---cC------CCcceEEEeccceEEEEEEHHHHHHHHHhChHH
Confidence 1111146689999999999 552 21 289999999999999999999999999998854
No 57
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.31 E-value=3.8e-12 Score=121.44 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=92.8
Q ss_pred eeeCCCcEEEccCCccCEEEEEEEceEEEEEec-CCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEec
Q 006911 394 TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEAL 472 (626)
Q Consensus 394 ~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~ 472 (626)
+.|++|++|+++|+.++.+|||.+|.|+++..+ +|++ .++..+++|++||+ +++ .+ .++.++++|.
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~~G~~~Ge-~~~---~~------~~~~~~~~A~ 68 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRL---ITLRHVLPGDYFGE-EAL---EG------KAYRYTAEAM 68 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCE---EEEEEECTTCEECG-GGG---TC------SBCSSEEEES
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCE---EEEEEecCCCEech-hhh---CC------CCceeEEEEC
Confidence 579999999999999999999999999999754 3333 46789999999999 873 22 2788899999
Q ss_pred cceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCCCccchhhhhh
Q 006911 473 TNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPLYVPLRDK 529 (626)
Q Consensus 473 ~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~ 529 (626)
++|+++.|++++|. |.+...+++....++.. +.......+.++|+..+...
T Consensus 69 ~~~~v~~i~~~~~~------p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~ 122 (195)
T 3b02_A 69 TEAVVQGLEPRAMD------HEALHRVARNLARQMRRVQAYEAHLQTGELRARIARYLLF 122 (195)
T ss_dssp SSEEEEEECGGGCC------HHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred CcEEEEEEcHHHcC------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999998 88888888887776633 33345566666666554433
No 58
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.31 E-value=3.9e-13 Score=114.28 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006911 243 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTV 301 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~ 301 (626)
.|..|+||+++|||||||||++|.|..+++++++.+++|..++++++|.+++.+.+...
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46679999999999999999999999999999999999999999999999988876543
No 59
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.27 E-value=8.2e-12 Score=141.48 Aligned_cols=133 Identities=11% Similarity=0.170 Sum_probs=109.8
Q ss_pred HHHHhhCcHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHhhcc-ceeeCCCcEEEccCCccCEEEEEEEceEEEEEe
Q 006911 347 ENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVK-PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSF 425 (626)
Q Consensus 347 ~~il~~Lp~~Lr~ei~~~~~~~~L~~~~~F~~ls~~~l~~L~~~l~-~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~ 425 (626)
..++...| ..|.+...+...+.++++++|.+++++.+..++..+. .+.|++|++|+++|+.++.+|||.+|.|+++..
T Consensus 12 r~iL~k~p-~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKPP-GQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSCG-GGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCCh-hhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 34554333 4454444445578899999999999999999999998 789999999999999999999999999999974
Q ss_pred cCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEecc-ceeeEEeCHHHHHHHHHHhHHH
Q 006911 426 NDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALT-NIEAFTLMADDLKIVFNEKMNQ 495 (626)
Q Consensus 426 ~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~-~~~ll~l~~~~f~~ll~~~p~~ 495 (626)
+ +. ++..+++|++||+.+++ .+ .++.++++|.+ +|+++.|++++|.++++++|.+
T Consensus 91 g--~~----il~~l~~Gd~fGe~al~---~~------~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 G--KG----VVCTLHEGDDFGKLALV---ND------APRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp T--TE----EEEEEETTCEECHHHHH---HT------CBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred C--CE----EEEEeCCCCEeehHHHh---CC------CCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 2 22 45899999999998773 22 27888999999 5999999999999999997744
No 60
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.27 E-value=2.9e-11 Score=101.24 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006911 244 LLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQS 298 (626)
Q Consensus 244 Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~ 298 (626)
|..|+||+++|+|||||||++|.|..+++++++.+++|..+++++++.++..++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6779999999999999999999999999999999999999999999999988765
No 61
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.21 E-value=2.5e-11 Score=98.39 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006911 243 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYL 296 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~ 296 (626)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999999999875
No 62
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.19 E-value=6.8e-11 Score=140.60 Aligned_cols=113 Identities=11% Similarity=0.163 Sum_probs=98.0
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHhhcccee-eCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCC
Q 006911 364 ELCWHLLKKVHEFRMLKEETLDALCDCVKPTF-FTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDS 442 (626)
Q Consensus 364 ~~~~~~L~~~~~F~~ls~~~l~~L~~~l~~~~-~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G 442 (626)
+...+.+.++|.|.+++...++.|+..+.... +..|++|+++||.++.+|||.+|.|+|+...++ .+..+++|
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~------~v~~L~~G 406 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG------VVCTLHEG 406 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTE------EEEEEETT
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCc------ceEEecCC
Confidence 33467899999999999999999999998655 577999999999999999999999999864322 34789999
Q ss_pred CeEecchhhhhhcccCccCccceeeEEEeccc-eeeEEeCHHHHHHHHHH
Q 006911 443 DFYGAELVDWALRDCSLFEFSKSTKTIEALTN-IEAFTLMADDLKIVFNE 491 (626)
Q Consensus 443 ~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~-~~ll~l~~~~f~~ll~~ 491 (626)
|+|||.++ +.+ .||.+|++|.++ |+++++++++|.+++.+
T Consensus 407 d~FGElAL---L~~------~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 407 DDFGKLAL---VND------APRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp CEECGGGG---TCS------CBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred Ccccchhh---ccC------CCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 99999987 332 399999999985 99999999999999988
No 63
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.17 E-value=1.8e-11 Score=117.40 Aligned_cols=123 Identities=14% Similarity=0.083 Sum_probs=91.7
Q ss_pred HHhhccceeeCCCcEEEccCCcc--CEEEEEEEceEEEEEec-CCccccceeeeeccCCCeEecchhhhhhcccCccCcc
Q 006911 387 LCDCVKPTFFTEHAHIIREGDPI--DELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFS 463 (626)
Q Consensus 387 L~~~l~~~~~~~ge~I~~~G~~~--~~lyfI~~G~v~v~~~~-~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~ 463 (626)
|...++.+.|++|++|+++|+.+ +++|||.+|.|+++..+ +|++ .++..+++|++||+ +++ .+ .
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~---~~~~~~~~g~~~G~-~~l---~~------~ 67 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNA---LTLRLVRPGGFFGE-EAL---FG------Q 67 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCE---EEEEEECTTCEECT-HHH---HT------C
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcE---EEEEEecCCCEeee-hhc---CC------C
Confidence 35678899999999999999999 99999999999999764 3443 46789999999999 663 21 2
Q ss_pred ceeeEEEeccceeeEEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhCCCCCCCccchhhhhh
Q 006911 464 KSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPLYVPLRDK 529 (626)
Q Consensus 464 ~~~~tv~A~~~~~ll~l~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~ 529 (626)
++.++++|+++|+++.| +++|. |.+...+++.+..++.. +.......+.++|+..+...
T Consensus 68 ~~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~ 129 (202)
T 2zcw_A 68 ERIYFAEAATDVRLEPL-PENPD------PELLKDLAQHLSQGLAEAYRRIERLATQRLKNRMAAALLE 129 (202)
T ss_dssp CBCSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CcceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 67889999999999999 99886 88888877777666533 33344455566666554433
No 64
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.09 E-value=2.3e-12 Score=119.47 Aligned_cols=61 Identities=11% Similarity=0.360 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006911 243 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRL 303 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~ 303 (626)
.|..|+||+++|+|||||||++|.|..+++++++.+++|++++++++|.+++.+.+...+.
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~ 127 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQ 127 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHH
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999888755443
No 65
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.05 E-value=1.2e-10 Score=118.24 Aligned_cols=62 Identities=10% Similarity=-0.037 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHhhccCCC-ccc-ccchhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006911 240 ILQKLLHCFVWGLQNLSNLGHD-LQS-GSDVWE----NIFVILVVSSGFLFFALLIGNMQIYLQSRTV 301 (626)
Q Consensus 240 ~~~~Y~~slYwa~~TmtTvGyG-Di~-p~t~~E----~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~ 301 (626)
.+..+..|+||+++|+||+||| |+. |.+... ..+++++++.|.++.+..+|.+.+-+.+...
T Consensus 177 ~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 177 WFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999 985 777654 7888999999999999999988887766443
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.99 E-value=1.1e-09 Score=110.74 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006911 243 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQ 297 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~ 297 (626)
.|..|+|||++|||||||||++|.+...++++++.+++|.+++|+++|.+.+.++
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999998887664
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.93 E-value=2.1e-09 Score=108.37 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006911 243 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSR 299 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~ 299 (626)
.|..|+||+++|||||||||++|.|...++++++.+++|+.+++++++.+++.+.+.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999988764
No 68
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.92 E-value=7.6e-10 Score=113.23 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006911 243 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQS 298 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~ 298 (626)
.|..|+|||++|||||||||++|.|..+++++++.+++|.+++|+++|.+.+.+..
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~ 151 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 151 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999887654
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.80 E-value=4.8e-09 Score=106.94 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006911 243 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQS 298 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~ 298 (626)
.|..|+|||++|||||||||+.|.|...++++++.|++|.+++|+++|.+.+.+..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999987765
No 70
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.72 E-value=2.7e-08 Score=110.80 Aligned_cols=55 Identities=15% Similarity=0.307 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 006911 244 LLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGN-MQIYLQS 298 (626)
Q Consensus 244 Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~-i~~i~~~ 298 (626)
|..|+||+++|||||||||++|.|..+++++++++++|.+++++.++. +.+.+..
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 107 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLA 107 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999998 5555433
No 71
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.70 E-value=6.7e-08 Score=98.53 Aligned_cols=56 Identities=13% Similarity=0.267 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhccCCCccccc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006911 244 LLHCFVWGLQNLSNLGHDLQSGS--DVWENIFVILVVSSGFLFFALLIGNMQIYLQSR 299 (626)
Q Consensus 244 Y~~slYwa~~TmtTvGyGDi~p~--t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~ 299 (626)
+..++|||+.|+|||||||+.|. +...++++++.+++|.++.|+.+|.+.+-++.-
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp 149 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP 149 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 46799999999999999999997 688999999999999999999999887766554
No 72
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.67 E-value=1.1e-08 Score=103.15 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhccCCCcccccchhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006911 244 LLHCFVWGLQNLSNLGHDLQSGSDVWEN------IFVILVVSSGFLFFALLIGNMQIYLQSRTV 301 (626)
Q Consensus 244 Y~~slYwa~~TmtTvGyGDi~p~t~~E~------i~~i~~~i~G~~~fa~iig~i~~i~~~~~~ 301 (626)
|+.|+||+++|+|||||||++|.+..++ +++++++++|..+++++++.+++.+.....
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~ 288 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSR 288 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999887 599999999999999999999988776543
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.66 E-value=3.3e-08 Score=98.05 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006911 243 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQS 298 (626)
Q Consensus 243 ~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~ 298 (626)
.|..|+||+++|+|||||||++|.|...++++++.+++|+.+++++++.++..+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999875544
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.58 E-value=4.2e-08 Score=97.31 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhccCCCcccccchhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006911 244 LLHCFVWGLQNLSNLGHDLQSGSDVWE-------NIFVILVVSSGFLFFALLIGNMQIYLQS 298 (626)
Q Consensus 244 Y~~slYwa~~TmtTvGyGDi~p~t~~E-------~i~~i~~~i~G~~~fa~iig~i~~i~~~ 298 (626)
|+.|+||++.|+|||||||++|.+... ++++++++++|..+++++++.+++++..
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999854 9999999999999999999999987755
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.55 E-value=2e-07 Score=95.15 Aligned_cols=57 Identities=11% Similarity=0.289 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhhccCCCcccc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006911 242 QKLLHCFVWGLQNLSNLGHDLQSG--SDVWENIFVILVVSSGFLFFALLIGNMQIYLQS 298 (626)
Q Consensus 242 ~~Y~~slYwa~~TmtTvGyGDi~p--~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~ 298 (626)
..+..+||||+.|+|||||||+.| .+...++++++.+++|.++.|+.+|.+.+-++.
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346789999999999999999986 488999999999999999999999988765544
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.42 E-value=1.5e-08 Score=105.12 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006911 245 LHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSR 299 (626)
Q Consensus 245 ~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~ 299 (626)
..|+||+++|+|||||||++|.|..+++++++++++|.++++++++.+++.+.+.
T Consensus 47 ~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 47 TVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp STTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999999999999999999999999999999999999877664
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.84 E-value=0.00019 Score=69.70 Aligned_cols=22 Identities=14% Similarity=-0.049 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhccCCCcc
Q 006911 242 QKLLHCFVWGLQNLSNLGHDLQ 263 (626)
Q Consensus 242 ~~Y~~slYwa~~TmtTvGyGDi 263 (626)
+....|++|.+.++||.|++|+
T Consensus 164 ~~~~~a~~~lf~~~t~~~w~~i 185 (229)
T 4dxw_A 164 GDLGISLITLFQVLTLSSWETV 185 (229)
T ss_dssp SSHHHHHHHHHHHHTTSSTHHH
T ss_pred cCHHHHHHHHHHHHccCCHHHH
Confidence 3456799999999999999997
No 78
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=94.47 E-value=0.018 Score=50.38 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHc-eeeCCCccEEEecccc---hhHHHHH
Q 006911 60 FFLICIHMVIFL-SYKNPLGFVINFLIYY---SILAMAG 94 (626)
Q Consensus 60 ~i~F~~Di~l~f-~y~~~~~~v~~Ylk~~---D~is~lP 94 (626)
.++|.+|.++++ +.-++. +|++ | |+++++|
T Consensus 47 ~~iFt~E~~lRl~~~~~~~----~y~~-~niiDllailp 80 (132)
T 1ors_C 47 VIILWADYAYRAYKSGDPA----GYVK-KTLYEIPALVP 80 (132)
T ss_dssp HHHHHHHHHHHHHHTTSTT----TTTT-TCGGGTGGGSC
T ss_pred HHHHHHHHHHHHHHCCCHH----HHHH-HHHHHHHHHHH
Confidence 344999999999 533221 6887 6 9999999
No 79
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=93.15 E-value=0.024 Score=50.59 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=21.9
Q ss_pred HHHHHHHHHHc-eeeCCCccEEEeccc-c-hhHHHHH
Q 006911 61 FLICIHMVIFL-SYKNPLGFVINFLIY-Y-SILAMAG 94 (626)
Q Consensus 61 i~F~~Di~l~f-~y~~~~~~v~~Ylk~-~-D~is~lP 94 (626)
++|.+|.++++ ..-++ . +|+|+ | |++|++|
T Consensus 63 ~iF~~Ey~lRl~~a~~k---~-~f~~~~iiDllailP 95 (147)
T 2kyh_A 63 IILWADYAYRAYKSGDP---A-GYVKKTLYEIPALVP 95 (147)
T ss_dssp HHHHHHHHHHHHHHTCH---H-HHHHHSTTTHHHHCC
T ss_pred HHHHHHHHHHHHHCCcH---H-HHHHHHHHHHHHHHH
Confidence 34999999999 43221 1 67765 5 9999999
No 80
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=70.99 E-value=19 Score=29.60 Aligned_cols=67 Identities=12% Similarity=0.066 Sum_probs=44.9
Q ss_pred ccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEE
Q 006911 391 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIE 470 (626)
Q Consensus 391 l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~ 470 (626)
+....+.||..+-..-....++++|++|++++... ++. ..+.+||.+=--+ ....+++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~~------~~l~~Gd~i~ip~--------------~~~H~~~ 95 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVD--GAQ------RRLHQGDLLYLGA--------------GAAHDVN 95 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEET--TEE------EEECTTEEEEECT--------------TCCEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEEC--CEE------EEECCCCEEEECC--------------CCcEEEE
Confidence 34456788888765555567999999999998863 322 5789999876431 1122567
Q ss_pred eccceeeEE
Q 006911 471 ALTNIEAFT 479 (626)
Q Consensus 471 A~~~~~ll~ 479 (626)
+.+++.++.
T Consensus 96 ~~~~~~~~~ 104 (114)
T 3fjs_A 96 AITNTSLLV 104 (114)
T ss_dssp ESSSEEEEE
T ss_pred eCCCcEEEE
Confidence 777776543
No 81
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=69.77 E-value=16 Score=34.36 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=51.6
Q ss_pred hccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEE
Q 006911 390 CVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTI 469 (626)
Q Consensus 390 ~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv 469 (626)
.+....+.||+.+-..-...+.+.+|++|++++... ++. ..+++||++=-.+ .....+
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~~------~~l~~Gd~~~~p~--------------~~~H~~ 95 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NNK------KTISNGDFLEITA--------------NHNYSI 95 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SCE------EEEETTEEEEECS--------------SCCEEE
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CEE------EEECCCCEEEECC--------------CCCEEE
Confidence 344566899999977777889999999999999873 322 5799998865331 123378
Q ss_pred EeccceeeEEe
Q 006911 470 EALTNIEAFTL 480 (626)
Q Consensus 470 ~A~~~~~ll~l 480 (626)
+|.+++.++.+
T Consensus 96 ~a~~~~~~l~i 106 (227)
T 3rns_A 96 EARDNLKLIEI 106 (227)
T ss_dssp EESSSEEEEEE
T ss_pred EECCCcEEEEE
Confidence 89999999877
No 82
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=65.71 E-value=4.9 Score=45.81 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhchHHHHhhccc
Q 006911 242 QKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPF 319 (626)
Q Consensus 242 ~~Y~~slYwa~~TmtTvGyGDi~p~t~~E~i~~i~~~i~G~~~fa~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~ 319 (626)
.....+++|++.++++.| ++..|.+...+++.+++++++.++.+.-.+++++++.. ..+...++.+++...+
T Consensus 562 ~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~-----~~~~~~I~s~~dL~~~ 633 (823)
T 3kg2_A 562 FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV-----ERMVSPIESAEDLSKQ 633 (823)
T ss_dssp HHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCCCCCSSHHHHHC
T ss_pred ccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-----cccCCCCCCHHHHhhC
Confidence 345678999999999888 67899999999999999999999999999999999875 2334445555554443
No 83
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=60.85 E-value=25 Score=28.57 Aligned_cols=44 Identities=18% Similarity=0.085 Sum_probs=30.4
Q ss_pred eCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 396 FTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 396 ~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
+.+|..+-.......++++|++|.+++... ++. ..+.+||.+=-
T Consensus 45 ~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~--~~~------~~l~~Gd~i~i 88 (114)
T 2ozj_A 45 FADGESVSEEEYFGDTLYLILQGEAVITFD--DQK------IDLVPEDVLMV 88 (114)
T ss_dssp EETTSSCCCBCCSSCEEEEEEEEEEEEEET--TEE------EEECTTCEEEE
T ss_pred ECCCCccccEECCCCeEEEEEeCEEEEEEC--CEE------EEecCCCEEEE
Confidence 556665543344567899999999998762 332 57999998753
No 84
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=60.05 E-value=42 Score=27.08 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=33.3
Q ss_pred cceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 392 KPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 392 ~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
....+.||..+-..-....++++|.+|.+++... ++. ..+.+||.+=-
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~--~~~------~~l~~Gd~~~i 90 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITID--QET------YRVAEGQTIVM 90 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEET--TEE------EEEETTCEEEE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEEC--CEE------EEECCCCEEEE
Confidence 4455778877643333456899999999998752 322 47899998753
No 85
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=59.08 E-value=17 Score=30.44 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=33.4
Q ss_pred ceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 393 PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 393 ~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
...+.||..+-.. ...+++++|++|++++.. +++. ..+++||.+--
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~~------~~l~~GD~v~i 89 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGET------VTAGPGEIVYM 89 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTEE------EEECTTCEEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCEE------EEECCCCEEEE
Confidence 3456788766443 267799999999999986 3332 47999998764
No 86
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=55.21 E-value=49 Score=26.68 Aligned_cols=68 Identities=12% Similarity=0.049 Sum_probs=42.6
Q ss_pred ccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEE
Q 006911 391 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIE 470 (626)
Q Consensus 391 l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~ 470 (626)
+....+.||..+-.--....++++|++|.+++.. +++. ..+.+||.+=--+ .....++
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~~------~~l~~Gd~~~ip~--------------~~~H~~~ 93 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGVI------KVLTAGDSFFVPP--------------HVDHGAV 93 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTEE------EEECTTCEEEECT--------------TCCEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCEE------EEeCCCCEEEECc--------------CCceeeE
Confidence 3445577887653333336689999999999876 2332 5799999864321 1122455
Q ss_pred eccceeeEEe
Q 006911 471 ALTNIEAFTL 480 (626)
Q Consensus 471 A~~~~~ll~l 480 (626)
+.+++.++.+
T Consensus 94 ~~~~~~~l~v 103 (116)
T 2pfw_A 94 CPTGGILIDT 103 (116)
T ss_dssp ESSCEEEEEE
T ss_pred eCCCcEEEEE
Confidence 6667776665
No 87
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=47.73 E-value=63 Score=26.52 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=34.1
Q ss_pred ccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 391 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 391 l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
+....+.||..+-..-....++++|++|.+++... ++. ..+.+||.+=-
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~--~~~------~~l~~Gd~~~i 91 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIG--EET------RVLRPGMAYTI 91 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEET--TEE------EEECTTEEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEEC--CEE------EEeCCCCEEEE
Confidence 34456778877744334457899999999998762 322 57899998753
No 88
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=47.69 E-value=51 Score=28.43 Aligned_cols=65 Identities=8% Similarity=0.008 Sum_probs=38.0
Q ss_pred ccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCH
Q 006911 404 REGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMA 482 (626)
Q Consensus 404 ~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~ 482 (626)
+.-+..|++|+|++|.+++...+++..........+++|+++---. .. ...-.|.++|.++.+..
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPk--------Gv------eH~p~a~~e~~vLLiEp 109 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPA--------EC------WFYSITQKDTKMMYVQD 109 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECT--------TC------EEEEEECTTCEEEEEEE
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCC--------Cc------cCcccCCCceEEEEEEe
Confidence 3445568999999999998865421100001225789999886421 11 11345566777766643
No 89
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=47.19 E-value=20 Score=32.41 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=36.1
Q ss_pred ccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 391 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 391 l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
+....+.||......-..++++++|++|++++...+.+.. ....+++||++--
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~----~~~~l~~GDv~~~ 95 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR----DTYKLDQGDAIKI 95 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEE----EEEEEETTEEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCc----EEEEECCCCEEEE
Confidence 4455688888765443345799999999999875432222 1257999998753
No 90
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=46.93 E-value=49 Score=26.64 Aligned_cols=48 Identities=8% Similarity=-0.068 Sum_probs=34.0
Q ss_pred ccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 391 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 391 l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
+-...+.||+.-.. ....++++|++|++++...+ ++. ..+++||.+--
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~-g~~------~~l~~GD~i~i 80 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTED-GKK------YVIEKGDLVTF 80 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETT-CCE------EEEETTCEEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEECC-CCE------EEECCCCEEEE
Confidence 34566788876544 34679999999999988632 322 47999998764
No 91
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=45.50 E-value=36 Score=27.19 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=33.5
Q ss_pred cceeeCCCcEEEcc--CCc-cCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 392 KPTFFTEHAHIIRE--GDP-IDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 392 ~~~~~~~ge~I~~~--G~~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
....+.||..+-.. -.. ..++++|++|.+++... ++. ..+.+||.+=-
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~--~~~------~~l~~Gd~~~i 74 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVD--GHT------QALQAGSLIAI 74 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEET--TEE------EEECTTEEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEEC--CEE------EEeCCCCEEEE
Confidence 34467888876543 333 57999999999998762 222 47899998753
No 92
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=44.98 E-value=25 Score=31.54 Aligned_cols=63 Identities=21% Similarity=0.429 Sum_probs=39.6
Q ss_pred HHHHHHHhhccc----eee-CCCcEEEc--cCC---------ccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeE
Q 006911 382 ETLDALCDCVKP----TFF-TEHAHIIR--EGD---------PIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFY 445 (626)
Q Consensus 382 ~~l~~L~~~l~~----~~~-~~ge~I~~--~G~---------~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~f 445 (626)
+-+++....+++ +.. .-+++++. .|. ..++++++++|.+.+...++++.. ...+++||+|
T Consensus 12 ~~l~~~~~~~~PpV~n~~v~nd~~~~V~~v~Gpn~r~d~H~h~~dE~FyvlkG~m~i~v~d~g~~~----~v~l~eGE~f 87 (174)
T 1yfu_A 12 RWIDEHAHLLKPPVGNRQVWQDSDFIVTVVGGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRE----RADLKEGDIF 87 (174)
T ss_dssp HHHHHTGGGSSTTTCEEESSSSCSEEEEEECSCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEE----EEEECTTCEE
T ss_pred HHHHHhhhhcCCCcCCEEEEcCCcEEEEEEcCCCcCccCcCCCCceEEEEEeeEEEEEEEcCCcee----eEEECCCCEE
Confidence 345556666666 432 22455533 222 346899999999999877654221 2579999998
Q ss_pred ecc
Q 006911 446 GAE 448 (626)
Q Consensus 446 Ge~ 448 (626)
=--
T Consensus 88 ~lP 90 (174)
T 1yfu_A 88 LLP 90 (174)
T ss_dssp EEC
T ss_pred EeC
Confidence 643
No 93
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=44.85 E-value=40 Score=26.32 Aligned_cols=47 Identities=6% Similarity=-0.116 Sum_probs=32.0
Q ss_pred cceeeCCCcEEEccCCc-cCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 392 KPTFFTEHAHIIREGDP-IDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 392 ~~~~~~~ge~I~~~G~~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
....+.||..+-..-.. .+++++|.+|.+++... ++. ..+.+||.+=
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~--~~~------~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG--EEE------ALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET--TEE------EEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC--CEE------EEeCCCCEEE
Confidence 34557788876433323 35799999999998763 222 5789999874
No 94
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=42.04 E-value=27 Score=28.85 Aligned_cols=49 Identities=18% Similarity=0.001 Sum_probs=32.6
Q ss_pred ccceeeCCCcEEEccCCc-cCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 391 VKPTFFTEHAHIIREGDP-IDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 391 l~~~~~~~ge~I~~~G~~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
+....+.||..+-..-.. ..++++|++|++++...+ ++. ..+++||.+-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~-~~~------~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGN-GIV------THLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECST-TCE------EEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECC-CeE------EEeCCCCEEE
Confidence 344567888876443334 368899999999986522 322 4789999864
No 95
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=41.70 E-value=83 Score=28.20 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=41.6
Q ss_pred HHHHHHHhhccc----eeeCCCcEEEc--cC---------CccCEEEEEEEceEEEEEecCCc--cccceeeeeccCCCe
Q 006911 382 ETLDALCDCVKP----TFFTEHAHIIR--EG---------DPIDELIFVMQGNLWTYSFNDLT--NGSTRKRDHLEDSDF 444 (626)
Q Consensus 382 ~~l~~L~~~l~~----~~~~~ge~I~~--~G---------~~~~~lyfI~~G~v~v~~~~~~~--~~~~~~~~~l~~G~~ 444 (626)
+-+++....+++ +....+++++. .| +..++++++++|.+.+...+++. .. +....+++||+
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~--~~dv~i~eGdm 89 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPK--FIDIIINEGDS 89 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCE--EEEEEECTTEE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccc--eeeEEECCCCE
Confidence 345666777777 55444777643 22 12358999999999998776440 00 12257999999
Q ss_pred Eecc
Q 006911 445 YGAE 448 (626)
Q Consensus 445 fGe~ 448 (626)
|=--
T Consensus 90 fllP 93 (176)
T 1zvf_A 90 YLLP 93 (176)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 8643
No 96
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=41.59 E-value=70 Score=29.85 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=46.2
Q ss_pred ccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEE
Q 006911 391 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIE 470 (626)
Q Consensus 391 l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~ 470 (626)
+....+.||+.+-..-...+++++|++|++++... ++. ..+.+||.+=-.+ .....++
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~--g~~------~~l~~Gd~i~ip~--------------~~~H~~~ 212 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVD--GKP------FIVKKGESAVLPA--------------NIPHAVE 212 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEET--TEE------EEEETTEEEEECT--------------TSCEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEEC--CEE------EEECCCCEEEECC--------------CCcEEEE
Confidence 44567899998865555567899999999998763 332 5789999875331 1122567
Q ss_pred e-ccceeeEE
Q 006911 471 A-LTNIEAFT 479 (626)
Q Consensus 471 A-~~~~~ll~ 479 (626)
+ .+++.++.
T Consensus 213 ~~~~~~~~ll 222 (227)
T 3rns_A 213 AETENFKMLL 222 (227)
T ss_dssp CCSSCEEEEE
T ss_pred eCCCCEEEEE
Confidence 7 78877664
No 97
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=39.07 E-value=23 Score=29.58 Aligned_cols=44 Identities=7% Similarity=0.009 Sum_probs=30.4
Q ss_pred eCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 396 FTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 396 ~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
..||..-.... ..++++.|++|.+++...+ |.. ..+++||.|--
T Consensus 49 ~tPG~~~~~~~-~~~E~~~iLeG~~~lt~dd-G~~------~~l~aGD~~~~ 92 (116)
T 3es4_A 49 AEPGIYNYAGR-DLEETFVVVEGEALYSQAD-ADP------VKIGPGSIVSI 92 (116)
T ss_dssp ECSEEEEECCC-SEEEEEEEEECCEEEEETT-CCC------EEECTTEEEEE
T ss_pred cCCceeECeeC-CCcEEEEEEEeEEEEEeCC-CeE------EEECCCCEEEE
Confidence 45555544432 2358999999999998644 332 57999999864
No 98
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=35.32 E-value=83 Score=28.27 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=30.7
Q ss_pred eeCCCcEEE---ccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 395 FFTEHAHII---REGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 395 ~~~~ge~I~---~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
.+.||...- .-...+.++++|++|.+++...+++.. ....+++||.+--
T Consensus 123 ~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~----~~~~l~~GD~~~~ 174 (198)
T 2bnm_A 123 DVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENP----KEALLPTGASMFV 174 (198)
T ss_dssp EECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSC----EEEEECTTCEEEE
T ss_pred EEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCc----ccEEECCCCEEEe
Confidence 456665432 122234689999999999887432111 1257999998754
No 99
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=35.31 E-value=24 Score=29.79 Aligned_cols=46 Identities=13% Similarity=0.005 Sum_probs=30.8
Q ss_pred eeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecc
Q 006911 395 FFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 448 (626)
Q Consensus 395 ~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 448 (626)
...||..-....+ .+++++|++|++++... +++. ..+++||.+---
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~~------~~l~~GD~~~ip 100 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGTV------HAVKAGDAFIMP 100 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCCE------EEEETTCEEEEC
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCeE------EEECCCCEEEEC
Confidence 3455655543322 37999999999998853 3332 479999998643
No 100
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=33.89 E-value=1.4e+02 Score=23.46 Aligned_cols=48 Identities=17% Similarity=0.021 Sum_probs=30.8
Q ss_pred ceeeCCCcEEEccCCcc-CEE-EEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 393 PTFFTEHAHIIREGDPI-DEL-IFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 393 ~~~~~~ge~I~~~G~~~-~~l-yfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
...+.+|..+-..-... .++ ++|++|.+++...+ ++. ..+.+||.+--
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~-~~~------~~l~~Gd~~~i 86 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG-DAV------IPAPRGAVLVA 86 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG-GCE------EEECTTEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC-CEE------EEECCCCEEEe
Confidence 34567887764332222 466 89999999987532 222 47899998753
No 101
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=33.76 E-value=57 Score=28.88 Aligned_cols=47 Identities=11% Similarity=-0.094 Sum_probs=32.0
Q ss_pred ceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 393 PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 393 ~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
...+.||..+-..--...++++|++|.+++... ++. ..+.+||++=-
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~--~~~------~~l~~Gd~i~i 106 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLD--DRV------EPLTPLDCVYI 106 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEET--TEE------EEECTTCEEEE
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEEC--CEE------EEECCCCEEEE
Confidence 345667766533333467999999999998763 222 57899998753
No 102
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=33.42 E-value=11 Score=30.36 Aligned_cols=51 Identities=8% Similarity=-0.013 Sum_probs=33.1
Q ss_pred ccceeeCCCcEEEccCC-ccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 391 VKPTFFTEHAHIIREGD-PIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 391 l~~~~~~~ge~I~~~G~-~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
++...++||+-+-..-- .....|+|.+|.+++...++... ...+.+|+.+=
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~-----~~~l~~G~~~~ 70 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRS-----LAQLKTGRSYA 70 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEE-----CCCBCTTCCEE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceE-----EEEecCCcEEE
Confidence 44567889988854443 34578889999999876543322 24678888654
No 103
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=32.17 E-value=35 Score=30.68 Aligned_cols=47 Identities=4% Similarity=-0.092 Sum_probs=30.3
Q ss_pred cceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeE
Q 006911 392 KPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFY 445 (626)
Q Consensus 392 ~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~f 445 (626)
....+.||...-.-.....+..+|++|++++...+ ++. ..+++||.+
T Consensus 82 ~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge~------~~L~~GDsi 128 (172)
T 3es1_A 82 RVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GAK------RTVRQGGII 128 (172)
T ss_dssp EEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GCE------EEECTTCEE
T ss_pred EEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-CeE------EEECCCCEE
Confidence 34456666543222233456889999999997632 222 479999998
No 104
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=31.76 E-value=18 Score=28.60 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=31.3
Q ss_pred ceeeCCCcEEEccCCccC-EEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 393 PTFFTEHAHIIREGDPID-ELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 393 ~~~~~~ge~I~~~G~~~~-~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
...+.||...-..-.... ++++|++|.+++...++.+. ..+.+||.+-.
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~------~~l~~Gd~~~~ 71 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVT------SQLTRGVSYTR 71 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEE------EEECTTCCEEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEE------EEEcCCCEEEe
Confidence 445777776422222333 59999999999886432122 57999998754
No 105
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=30.73 E-value=42 Score=29.93 Aligned_cols=32 Identities=9% Similarity=-0.100 Sum_probs=24.7
Q ss_pred ccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 408 PIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 408 ~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
.++.++||++|.+++... ++. ..+++||.|=-
T Consensus 109 ~gEE~~yVLeG~v~vtl~--g~~------~~L~~Gds~~i 140 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTVC--KNK------FLSVKGSTFQI 140 (166)
T ss_dssp SEEEEEEEEESEEEEEET--TEE------EEEETTCEEEE
T ss_pred CceEEEEEEEeEEEEEEC--CEE------EEEcCCCEEEE
Confidence 456899999999999873 322 47999998764
No 106
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=30.30 E-value=83 Score=24.40 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=32.6
Q ss_pred CEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeC
Q 006911 410 DELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLM 481 (626)
Q Consensus 410 ~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~ 481 (626)
.++++|.+|.+.+... ++. ..+.+||.+---. .....+.+.+++.++.++
T Consensus 51 ~e~~~v~~G~~~~~~~--~~~------~~l~~Gd~~~ip~--------------~~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFR--DQN------ITLQAGEMYVIPK--------------GVEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CEEEEEEESEEEEECS--SCE------EEEETTEEEEECT--------------TCCBEEEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEEC--CEE------EEEcCCCEEEECC--------------CCeEeeEcCCCCEEEEEE
Confidence 7899999999998753 222 4689999864321 111244555778777764
No 107
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=29.33 E-value=67 Score=26.96 Aligned_cols=46 Identities=7% Similarity=-0.067 Sum_probs=31.2
Q ss_pred ceeeCCCcEEEccCCc-cCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 393 PTFFTEHAHIIREGDP-IDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 393 ~~~~~~ge~I~~~G~~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
...+.||..+-.---. ..++++|++|.+++... ++. ..+.+||++=
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~--~~~------~~l~~Gd~i~ 107 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN--GKD------VPIKAGDVCF 107 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEET--TEE------EEEETTEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEEC--CEE------EEeCCCcEEE
Confidence 4457888765322222 36899999999998762 322 5789999874
No 108
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=29.31 E-value=50 Score=26.80 Aligned_cols=45 Identities=2% Similarity=0.005 Sum_probs=28.8
Q ss_pred eeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeee-eccCCCeEe
Q 006911 394 TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRD-HLEDSDFYG 446 (626)
Q Consensus 394 ~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~-~l~~G~~fG 446 (626)
..+.||...-.--....++++|.+|.+++... ++. . .+.+||.+=
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~~------~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLE--DQE------PHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEET--TSC------CEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEEC--CEE------EEEeCCCCEEE
Confidence 34556655422222346899999999998763 222 3 689999875
No 109
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=28.97 E-value=68 Score=29.92 Aligned_cols=46 Identities=15% Similarity=-0.050 Sum_probs=30.1
Q ss_pred eCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecc
Q 006911 396 FTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 448 (626)
Q Consensus 396 ~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 448 (626)
+.||...=.--..++++|+|++|.++....+ ++. ..+++|+.+=-.
T Consensus 139 l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~-g~~------~~l~pGd~v~ip 184 (217)
T 4b29_A 139 WGPGLDYGWHEHLPEELYSVVSGRALFHLRN-APD------LMLEPGQTRFHP 184 (217)
T ss_dssp ECSSCEEEEEECSSEEEEEEEEECEEEEETT-SCC------EEECTTCEEEEC
T ss_pred ECCCCcCCCCCCCCceEEEEEeCCEEEEECC-CCE------EecCCCCEEEcC
Confidence 4445443222345679999999999987642 222 578999987543
No 110
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=28.28 E-value=75 Score=26.13 Aligned_cols=76 Identities=12% Similarity=0.041 Sum_probs=43.8
Q ss_pred eeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEe--
Q 006911 394 TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEA-- 471 (626)
Q Consensus 394 ~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A-- 471 (626)
..+.||...-..-....++++|.+|.+++... ++. ..+.+||++=--.- . +. .+.+
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~--~~~------~~l~~Gd~~~i~~~---------~---~H--~~~~~~ 96 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRIN--DED------FPVTKGDLIIIPLD---------S---EH--HVINNN 96 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEESEEEEEET--TEE------EEEETTCEEEECTT---------C---CE--EEEECS
T ss_pred EEECCCCccCCEecCCeEEEEEEeCEEEEEEC--CEE------EEECCCcEEEECCC---------C---cE--EeEeCC
Confidence 34556664322223456899999999998862 332 57899998753310 0 12 2333
Q ss_pred cccee--eEEeCHHHHHHHHHH
Q 006911 472 LTNIE--AFTLMADDLKIVFNE 491 (626)
Q Consensus 472 ~~~~~--ll~l~~~~f~~ll~~ 491 (626)
-++++ ++.++.+-+..++.+
T Consensus 97 ~~~~~~~~i~f~~~~~~~~~~~ 118 (128)
T 4i4a_A 97 QEDFHFYTIWWDKESTLNFLTR 118 (128)
T ss_dssp SSCEEEEEEEECHHHHHHHHHH
T ss_pred CCCEEEEEEEECHHHHHHHHHh
Confidence 33333 455677766666554
No 111
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=27.62 E-value=49 Score=29.37 Aligned_cols=46 Identities=9% Similarity=-0.026 Sum_probs=30.4
Q ss_pred eeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 394 TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 394 ~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
..+.||..+-..-....++++|++|++++... ++. ..+.+||++=-
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~--g~~------~~l~~GD~i~i 103 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMVG--RAV------SAVAPYDLVTI 103 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEET--TEE------EEECTTCEEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEEC--CEE------EEeCCCCEEEE
Confidence 34566665533333456899999999998752 332 57899998753
No 112
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=27.48 E-value=1.1e+02 Score=27.72 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=35.2
Q ss_pred ccceeeCCCcEEEccC-CccCEEEEEEEceEEEEEecCC---ccccceeeeeccCCCeEec
Q 006911 391 VKPTFFTEHAHIIREG-DPIDELIFVMQGNLWTYSFNDL---TNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 391 l~~~~~~~ge~I~~~G-~~~~~lyfI~~G~v~v~~~~~~---~~~~~~~~~~l~~G~~fGe 447 (626)
+....+.||...-.-- ...+++++|++|++++...+++ .+ .....+.+||.+--
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~---~~~~~l~~GD~~~i 131 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNK---LYSRVVRAGETFVI 131 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTC---EEEEEEETTCEEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCe---EEEEEECCCCEEEE
Confidence 3445678887653322 2357999999999998765432 22 11257999998753
No 113
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=27.47 E-value=55 Score=27.83 Aligned_cols=45 Identities=13% Similarity=-0.009 Sum_probs=30.6
Q ss_pred eeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecc
Q 006911 394 TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 448 (626)
Q Consensus 394 ~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 448 (626)
..+.||..-.. ...+++++|++|++++... ++. ..+++||.+---
T Consensus 62 ~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~--g~~------~~l~~GD~i~~p 106 (133)
T 2pyt_A 62 MQWDNAFFPWT--LNYDEIDMVLEGELHVRHE--GET------MIAKAGDVMFIP 106 (133)
T ss_dssp EEEEEEEEEEE--CSSEEEEEEEEEEEEEEET--TEE------EEEETTCEEEEC
T ss_pred EEECCCCcccc--CCCCEEEEEEECEEEEEEC--CEE------EEECCCcEEEEC
Confidence 34667743222 2357999999999998863 332 479999988643
No 114
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=27.28 E-value=52 Score=28.84 Aligned_cols=44 Identities=11% Similarity=-0.012 Sum_probs=29.4
Q ss_pred eeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 395 FFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 395 ~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
.+.||...-..-....++++|++|++++.. +++. ..+.+||++=
T Consensus 50 ~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~~------~~l~~Gd~i~ 93 (156)
T 3kgz_A 50 EVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GETI------SDVAQGDLVF 93 (156)
T ss_dssp EEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTEE------EEEETTCEEE
T ss_pred EECCCCccCceeCCCcEEEEEEeCEEEEEE--CCEE------EEeCCCCEEE
Confidence 455665543333345689999999999886 2332 5789999874
No 115
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=27.17 E-value=95 Score=28.29 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=45.3
Q ss_pred hccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEE
Q 006911 390 CVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTI 469 (626)
Q Consensus 390 ~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv 469 (626)
.+...++.||..+-.-...+.++.+|++|..+ ++. ..+.+||++=.-. ....+.
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~--------~~~~~Gd~~~~p~--------------g~~H~p 179 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DET--------DRFGAGDIEIADQ--------------ELEHTP 179 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSS--------SEEETTCEEEECS--------------SCCCCC
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCc--------EEECCCeEEEeCc--------------CCccCC
Confidence 45677899999998877788899999999965 221 4688999865331 111234
Q ss_pred Ee--ccceeeEEe
Q 006911 470 EA--LTNIEAFTL 480 (626)
Q Consensus 470 ~A--~~~~~ll~l 480 (626)
.+ .+.|.++..
T Consensus 180 ~a~~~~gc~~l~~ 192 (195)
T 2q1z_B 180 VAERGLDCICLAA 192 (195)
T ss_dssp EECSSSCEEEEEE
T ss_pred EeCCCCCEEEEEE
Confidence 45 678887764
No 116
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=26.99 E-value=60 Score=28.53 Aligned_cols=47 Identities=15% Similarity=0.029 Sum_probs=30.9
Q ss_pred ceeeCCCcEEE--ccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 393 PTFFTEHAHII--REGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 393 ~~~~~~ge~I~--~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
...+.||.... ..-...+++++|++|++++... ++. ..+.+||.+--
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~~------~~l~~GD~i~i 95 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QGE------HPMVPGDCAAF 95 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TEE------EEECTTCEEEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CEE------EEeCCCCEEEE
Confidence 44567777442 2222236999999999998863 222 57899998753
No 117
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=26.87 E-value=60 Score=26.44 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=25.3
Q ss_pred CccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecc
Q 006911 407 DPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 448 (626)
Q Consensus 407 ~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 448 (626)
...+++++|++|.+++...++ ... ..+++||.+---
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~--~~~----~~l~~Gd~i~ip 86 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGD--TAP----RVMRPGDWLHVP 86 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTC--SSC----EEECTTEEEEEC
T ss_pred CCccEEEEEEeCeEEEEECCE--EEE----EEECCCCEEEEC
Confidence 345689999999999987432 110 368999987643
No 118
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=26.72 E-value=57 Score=28.57 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=24.1
Q ss_pred cCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 409 IDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 409 ~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
.+++++|++|++++.. +++. ..+++||.+=-
T Consensus 84 ~eE~~yVLeG~~~l~i--~g~~------~~l~~GD~i~i 114 (151)
T 4axo_A 84 YDEIDYVIDGTLDIII--DGRK------VSASSGELIFI 114 (151)
T ss_dssp SEEEEEEEEEEEEEEE--TTEE------EEEETTCEEEE
T ss_pred CcEEEEEEEeEEEEEE--CCEE------EEEcCCCEEEE
Confidence 5689999999999986 3333 57999998753
No 119
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=26.20 E-value=75 Score=30.11 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=36.5
Q ss_pred hccceeeCCCcEEEc-cCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecc
Q 006911 390 CVKPTFFTEHAHIIR-EGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 448 (626)
Q Consensus 390 ~l~~~~~~~ge~I~~-~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 448 (626)
.+....+.||..+-. +-...++.++|++|++.+.. +++. ..+++||++---
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~~------~~l~~GD~~~~~ 217 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EENY------YPVTAGDIIWMG 217 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTEE------EEEETTCEEEEC
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCEE------EEcCCCCEEEEC
Confidence 345667889987753 33456789999999999876 3332 479999987643
No 120
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=26.00 E-value=1.1e+02 Score=27.39 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=30.9
Q ss_pred eeeCCCcEEEc--cCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 394 TFFTEHAHIIR--EGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 394 ~~~~~ge~I~~--~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
..+.||...-. -.....++++|++|.+++... ++. ..+.+||.+=-
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~--~~~------~~l~~GD~i~i 156 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFD--EQW------HELQQGEHIRF 156 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEET--TEE------EEECTTCEEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEEC--CEE------EEeCCCCEEEE
Confidence 45677766542 122346999999999998762 332 47999998743
No 121
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=25.66 E-value=1.3e+02 Score=30.49 Aligned_cols=75 Identities=11% Similarity=0.077 Sum_probs=53.3
Q ss_pred ceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEec
Q 006911 393 PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEAL 472 (626)
Q Consensus 393 ~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~ 472 (626)
...++||+..-..-..+..+|.|.+|.-.+.. +++. ...++||.|---+. ...+..+.
T Consensus 283 ~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I--~~~~------~~w~~gD~fvvP~w--------------~~h~~~n~ 340 (368)
T 3nw4_A 283 FHRLRAGTETATRNEVGSTVFQVFEGAGAVVM--NGET------TKLEKGDMFVVPSW--------------VPWSLQAE 340 (368)
T ss_dssp EEEECTTCBCCCEEESSCEEEEEEESCEEEEE--TTEE------EEECTTCEEEECTT--------------CCEEEEES
T ss_pred eEEECCCCccCCeeccccEEEEEEeCcEEEEE--CCEE------EEecCCCEEEECCC--------------CcEEEEeC
Confidence 45577777765555567799999999988765 2322 47899999975532 22356677
Q ss_pred cceeeEEeCHHHHHHHH
Q 006911 473 TNIEAFTLMADDLKIVF 489 (626)
Q Consensus 473 ~~~~ll~l~~~~f~~ll 489 (626)
+++.++.++-.-+++-|
T Consensus 341 ~~a~Lf~~~D~Pl~~~L 357 (368)
T 3nw4_A 341 TQFDLFRFSDAPIMEAL 357 (368)
T ss_dssp SSEEEEEEESHHHHHHT
T ss_pred CCEEEEEEeCHHHHHHh
Confidence 99999999877766544
No 122
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=25.48 E-value=59 Score=33.93 Aligned_cols=54 Identities=15% Similarity=0.017 Sum_probs=38.4
Q ss_pred hhccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 389 DCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 389 ~~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
..+....+.||..+..--...+++++|++|++++...+++.. ....+++||++-
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~----~~~~l~~GDv~~ 114 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSR----DSYILEQGHAQK 114 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCE----EEEEEETTEEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCC----EEEEeCCCCEEE
Confidence 345567789999886665556799999999999876433222 125788999874
No 123
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=25.34 E-value=59 Score=33.73 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=37.5
Q ss_pred hccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 390 CVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 390 ~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
.+....+.||..+...-...+++++|++|++++...+.+.. ....+++||++-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~----~~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDR----DSYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCE----EEEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCC----eEEEecCCCEEE
Confidence 35567789998776555556799999999999875433221 125789999874
No 124
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=24.77 E-value=60 Score=28.35 Aligned_cols=54 Identities=7% Similarity=0.004 Sum_probs=32.0
Q ss_pred ceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCcc--ccceeeeeccCCCeEec
Q 006911 393 PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTN--GSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 393 ~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~--~~~~~~~~l~~G~~fGe 447 (626)
...+.||..+-..-....++++|++|.+++...++++. .- .....+.+||++=-
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~-~~~~~l~~Gd~i~i 100 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQ-PQEIPFFQNTTFSI 100 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCS-CEEEEECTTEEEEE
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCc-cEEEEeCCCCEEEE
Confidence 34567776542222234679999999999887542110 00 01257999998753
No 125
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=24.35 E-value=65 Score=33.74 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=37.6
Q ss_pred hccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 390 CVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 390 ~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
.+....+.||..+...-...+++++|++|++++...+.+... ...+++||++--
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~----~~~l~~GDv~~~ 140 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD----TYKLDQGDAIKI 140 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE----EEEEETTEEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE----EEEecCCCEEEE
Confidence 344567899988765544567999999999998754322211 257899998753
No 126
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=24.20 E-value=49 Score=34.01 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=35.1
Q ss_pred cceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecc
Q 006911 392 KPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 448 (626)
Q Consensus 392 ~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 448 (626)
....+.||+.+-..-....++|||++|+-.....+ ++. ..+++||++=--
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~-G~~------~~~~~GD~i~~P 175 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVD-GHK------VELGANDFVLTP 175 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEET-TEE------EEECTTCEEEEC
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEEC-CEE------EEEcCCCEEEEC
Confidence 55678888888554445568999999987654433 333 478999988643
No 127
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=24.18 E-value=57 Score=27.05 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=29.7
Q ss_pred eeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 394 TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 394 ~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
..+.||...-.--....++++|.+|.+++... ++. ..+.+||++=
T Consensus 53 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~~------~~l~~Gd~i~ 97 (126)
T 1vj2_A 53 FTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE--QGE------ETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEEESEEEEECS--SCE------EEEETTEEEE
T ss_pred EEECCCCcCCceeCCCcEEEEEEEeEEEEEEC--CEE------EEECCCCEEE
Confidence 34566655533223357899999999998753 222 4688999875
No 128
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=22.97 E-value=1.9e+02 Score=27.10 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=31.9
Q ss_pred eeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecc
Q 006911 394 TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 448 (626)
Q Consensus 394 ~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 448 (626)
..+.||.-.-..- .+++.+|++|++++... ++. ..+++||++---
T Consensus 55 ~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~--~~~------~~l~~Gd~~~~p 99 (246)
T 1sfn_A 55 AEMPAGAQATESV--YQRFAFVLSGEVDVAVG--GET------RTLREYDYVYLP 99 (246)
T ss_dssp EEECTTCEEECCS--SEEEEEEEEEEEEEECS--SCE------EEECTTEEEEEC
T ss_pred EEECCCCcCCCCc--eeEEEEEEECEEEEEEC--CEE------EEECCCCEEEEC
Confidence 4567776654432 67899999999998853 322 579999987643
No 129
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=22.81 E-value=1e+02 Score=28.98 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=33.9
Q ss_pred ccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeE
Q 006911 391 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFY 445 (626)
Q Consensus 391 l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~f 445 (626)
+....+.||..+-.---...++++|++|.+++.. +++. ..+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~~------~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDVT------RKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTEE------EEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCEE------EEECCCCEE
Confidence 4445588888775444456789999999999886 2332 579999944
No 130
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=22.67 E-value=69 Score=25.45 Aligned_cols=67 Identities=6% Similarity=-0.027 Sum_probs=38.3
Q ss_pred CCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEecccee
Q 006911 397 TEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIE 476 (626)
Q Consensus 397 ~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ 476 (626)
.+|+.....-+...++++|++|.+++...+ ++. ..+.+||.+=--+ .. +. ..++.+++.
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~~------~~l~~Gd~~~ip~---------~~---~H--~~~~~~~~~ 94 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GGS------MTIREGEMAVVPK---------SV---SH--RPRSENGCS 94 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEETT-SCE------EEECTTEEEEECT---------TC---CE--EEEEEEEEE
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEECC-CcE------EEECCCCEEEECC---------CC---cE--eeEeCCCeE
Confidence 455433222222379999999999988633 122 5799999875331 00 11 334446777
Q ss_pred eEEeCHHH
Q 006911 477 AFTLMADD 484 (626)
Q Consensus 477 ll~l~~~~ 484 (626)
++.+....
T Consensus 95 ~l~i~~~~ 102 (107)
T 2i45_A 95 LVLIELSD 102 (107)
T ss_dssp EEEEECC-
T ss_pred EEEEECCC
Confidence 77776544
No 131
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=22.60 E-value=1.7e+02 Score=28.34 Aligned_cols=58 Identities=5% Similarity=0.142 Sum_probs=37.7
Q ss_pred ccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEeccceeeEEeCHH
Q 006911 408 PIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMAD 483 (626)
Q Consensus 408 ~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~l~~~ 483 (626)
..++++++++|.+.+-..++++. .-..+++|++|=--.= -..+=++-++|..++|.+.
T Consensus 50 ~~dE~FyqlkG~m~l~~~d~g~~----~~V~i~eGemfllP~g--------------v~HsP~r~~et~gLviE~~ 107 (286)
T 2qnk_A 50 EGEEVFYQLEGDMVLRVLEQGKH----RDVVIRQGEIFLLPAR--------------VPHSPQRFANTVGLVVERR 107 (286)
T ss_dssp SSCEEEEEEESCEEEEEEETTEE----EEEEECTTEEEEECTT--------------CCEEEEECTTCEEEEEEEC
T ss_pred CCCeEEEEEeCeEEEEEEeCCce----eeEEECCCeEEEeCCC--------------CCcCCcccCCeEEEEEeec
Confidence 45799999999999987775532 1257899998864310 1113334567777777644
No 132
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=21.73 E-value=85 Score=25.75 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=28.6
Q ss_pred ceeeCCCcEEE--ccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 393 PTFFTEHAHII--REGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 393 ~~~~~~ge~I~--~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
...+.||..+- ..-+..+.+|+|.+|.+++... ++. ..+.+||++=
T Consensus 30 ~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~--~~~------~~l~~Gd~i~ 77 (125)
T 3cew_A 30 INHLPAGAGVPFVHSHKQNEEIYGILSGKGFITID--GEK------IELQAGDWLR 77 (125)
T ss_dssp EEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEET--TEE------EEEETTEEEE
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEeCEEEEEEC--CEE------EEeCCCCEEE
Confidence 34567776542 2222234577799999998763 222 4688999875
No 133
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=21.63 E-value=75 Score=32.66 Aligned_cols=74 Identities=7% Similarity=-0.032 Sum_probs=47.2
Q ss_pred cceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEe
Q 006911 392 KPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEA 471 (626)
Q Consensus 392 ~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A 471 (626)
....+.||+..-..-...+.+|+|++|+..+.. +++. ..+++||+|-.-.-. .. ....
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V--~ge~------~~~~~GD~~~iP~g~------------~H--~~~N 354 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV--GGKR------FDWSEHDIFCVPAWT------------WH--EHCN 354 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEE--TTEE------EEECTTCEEEECTTC------------CE--EEEE
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE--CCEE------EEEeCCCEEEECCCC------------eE--EeEe
Confidence 455678888775544556789999999986554 3333 579999998754210 11 2222
Q ss_pred ---ccceeeEEeCHHHHHH
Q 006911 472 ---LTNIEAFTLMADDLKI 487 (626)
Q Consensus 472 ---~~~~~ll~l~~~~f~~ 487 (626)
.+++.++.++..-+.+
T Consensus 355 ~g~~e~~~ll~i~D~Pl~~ 373 (394)
T 3bu7_A 355 TQERDDACLFSFNDFPVME 373 (394)
T ss_dssp CCSSCCEEEEEEESHHHHH
T ss_pred CCCCCCeEEEEeeCHHHHH
Confidence 3577888886555443
No 134
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=21.44 E-value=1.1e+02 Score=29.66 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=36.7
Q ss_pred hhccceeeCCCcEEEc-cCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 389 DCVKPTFFTEHAHIIR-EGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 389 ~~l~~~~~~~ge~I~~-~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
..+....+.||..+-. +-..-++.++|++|+..+.. +++. ..+++||++-
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~--~~~~------~~v~~GD~~~ 241 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL--NQDW------VEVEAGDFMW 241 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE--TTEE------EEEETTCEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE--CCEE------EEeCCCCEEE
Confidence 4456677899999964 44444588999999999875 3333 5799999874
No 135
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=21.42 E-value=1.3e+02 Score=29.99 Aligned_cols=52 Identities=10% Similarity=-0.034 Sum_probs=34.2
Q ss_pred ceeeCCCcEEEccCCc-cCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 393 PTFFTEHAHIIREGDP-IDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 393 ~~~~~~ge~I~~~G~~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
...+.||...-..-.. .+++++|++|++++...+++... ....+++||++=-
T Consensus 56 ~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~---~~~~l~~GD~~~i 108 (361)
T 2vqa_A 56 YMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKV---EIADVDKGGLWYF 108 (361)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCE---EEEEEETTEEEEE
T ss_pred EEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcE---EEEEEcCCCEEEE
Confidence 4557788865332233 68999999999998875422210 1257999998753
No 136
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=21.33 E-value=1.1e+02 Score=26.28 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=31.5
Q ss_pred ceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEec
Q 006911 393 PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 393 ~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe 447 (626)
...+.||..+-..--...++++|++|.+++...+ +.. ..+.+||++--
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~--~~~-----~~l~~Gd~i~i 99 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQERG--KPA-----RILKKGDVVEI 99 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEETT--SCC-----EEEETTCEEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEECC--EEE-----EEECCCCEEEE
Confidence 4456777766332233468999999999987632 210 36889998753
No 137
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=21.07 E-value=1.3e+02 Score=30.06 Aligned_cols=53 Identities=17% Similarity=0.104 Sum_probs=35.5
Q ss_pred ccceeeCCCcEEEccCCcc-CEEEEEEEceEEEEEec-CCccccceeeeeccCCCeEec
Q 006911 391 VKPTFFTEHAHIIREGDPI-DELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGA 447 (626)
Q Consensus 391 l~~~~~~~ge~I~~~G~~~-~~lyfI~~G~v~v~~~~-~~~~~~~~~~~~l~~G~~fGe 447 (626)
+....+.||..+-..-... +++++|++|++++...+ +++. ....+++||++--
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~----~~~~l~~GD~~~i 290 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKA----SVSRLQQGDVGYV 290 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCE----EEEEECTTCEEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcE----EEEEECCCCEEEE
Confidence 4455688888764333333 79999999999987643 2321 1257999998853
No 138
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=20.62 E-value=1.1e+02 Score=26.58 Aligned_cols=46 Identities=13% Similarity=0.056 Sum_probs=30.8
Q ss_pred ceeeCCCcE-E-EccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEe
Q 006911 393 PTFFTEHAH-I-IREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 446 (626)
Q Consensus 393 ~~~~~~ge~-I-~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fG 446 (626)
...+.||.. . ...-....++++|++|++++... ++. ..+++||++-
T Consensus 50 ~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~--~~~------~~l~~Gd~i~ 97 (162)
T 3l2h_A 50 LIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTME--NDQ------YPIAPGDFVG 97 (162)
T ss_dssp EEEECTTCBSSSSBEESSCCEEEEEEESCEEEEET--TEE------EEECTTCEEE
T ss_pred EEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEEC--CEE------EEeCCCCEEE
Confidence 355777763 2 11122457999999999998852 322 5799999873
No 139
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=20.32 E-value=76 Score=27.32 Aligned_cols=52 Identities=6% Similarity=-0.127 Sum_probs=34.9
Q ss_pred ccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecc
Q 006911 391 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 448 (626)
Q Consensus 391 l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 448 (626)
+...+++||..+-.-.....+.++|++|..+.. .+... .-..+++|+++=.-
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~---~g~~~---~~~~~~~Gd~~~~p 97 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVR---GGKAA---GGDTAIAPGYGYES 97 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEET---TCGGG---TSEEEESSEEEEEC
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEEc---CCCEe---cceEeCCCEEEEEC
Confidence 556778999988766666678899999999832 22211 00357788887543
No 140
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=20.18 E-value=1.2e+02 Score=29.13 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=41.8
Q ss_pred ceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecchhhhhhcccCccCccceeeEEEec
Q 006911 393 PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEAL 472 (626)
Q Consensus 393 ~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~ 472 (626)
...+.||.---......+++.+|++|++++...+ ++. ..+++|+.+=.-+ ....+++..
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~-g~~------~~L~~Gds~y~p~--------------~~~H~~~N~ 132 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTS-SSS------KKLTVDSYAYLPP--------------NFHHSLDCV 132 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CCC------EEECTTEEEEECT--------------TCCCEEEES
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECC-CcE------EEEcCCCEEEECC--------------CCCEEEEeC
Confidence 3456777653222334579999999999998631 222 4799999876432 111134445
Q ss_pred cceeeEEeC
Q 006911 473 TNIEAFTLM 481 (626)
Q Consensus 473 ~~~~ll~l~ 481 (626)
++++++.+.
T Consensus 133 ~~Ar~l~V~ 141 (266)
T 4e2q_A 133 ESATLVVFE 141 (266)
T ss_dssp SCEEEEEEE
T ss_pred CCEEEEEEE
Confidence 778888774
No 141
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=20.06 E-value=98 Score=27.22 Aligned_cols=49 Identities=6% Similarity=-0.035 Sum_probs=34.4
Q ss_pred hccceeeCCCcEEEccCCccCEEEEEEEceEEEEEecCCccccceeeeeccCCCeEecc
Q 006911 390 CVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 448 (626)
Q Consensus 390 ~l~~~~~~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~~l~~G~~fGe~ 448 (626)
.+...+++||..+-.-...+.+..+|++|..+.. +.. ..+.+|+++=+-
T Consensus 43 ~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~---e~~-------~~~~~Gd~~~~P 91 (159)
T 3ebr_A 43 TITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRYK---EHD-------WVAHAGSVVYET 91 (159)
T ss_dssp EEEEEEECSSCBCCCEEESSCEEEEEEESCEEET---TSS-------CCBCTTCEEEEC
T ss_pred EEEEEEECCCCCcccccCCCCEEEEEEEeEEEEe---CCC-------eEECCCeEEEEC
Confidence 4455678889888666666678889999998742 221 258899986544
Done!