Query 006912
Match_columns 626
No_of_seqs 210 out of 2026
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 16:16:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2023 Nuclear transport rece 100.0 1.4E-85 3E-90 629.8 44.3 604 4-618 2-615 (885)
2 KOG2171 Karyopherin (importin) 100.0 6.5E-61 1.4E-65 492.1 54.3 551 15-615 4-571 (1075)
3 KOG1241 Karyopherin (importin) 100.0 2E-50 4.4E-55 394.7 43.7 545 16-617 2-607 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 5.4E-42 1.2E-46 324.8 45.8 546 16-616 5-733 (858)
5 KOG1991 Nuclear transport rece 100.0 4.1E-38 8.8E-43 318.2 49.9 569 14-619 3-655 (1010)
6 KOG2171 Karyopherin (importin) 100.0 6.7E-33 1.4E-37 286.2 45.7 531 13-616 37-616 (1075)
7 KOG1992 Nuclear export recepto 100.0 1.4E-32 2.9E-37 272.1 42.0 569 13-619 3-652 (960)
8 COG5656 SXM1 Importin, protein 100.0 6.8E-28 1.5E-32 236.1 45.1 546 15-598 3-630 (970)
9 KOG2274 Predicted importin 9 [ 100.0 1.3E-26 2.8E-31 232.4 44.6 557 14-619 3-626 (1005)
10 KOG1993 Nuclear transport rece 100.0 1.6E-26 3.5E-31 228.2 40.3 559 17-611 2-661 (978)
11 KOG2023 Nuclear transport rece 100.0 8E-27 1.7E-31 226.0 36.4 553 25-618 58-674 (885)
12 KOG1824 TATA-binding protein-i 100.0 7.7E-24 1.7E-28 212.9 42.7 525 62-618 16-663 (1233)
13 KOG1241 Karyopherin (importin) 99.9 3.4E-23 7.4E-28 204.4 42.7 537 11-615 30-732 (859)
14 KOG2021 Nuclear mRNA export fa 99.9 2E-20 4.2E-25 184.4 44.6 472 15-529 3-585 (980)
15 COG5101 CRM1 Importin beta-rel 99.9 2.1E-18 4.6E-23 167.0 41.5 555 16-607 15-719 (1053)
16 KOG1824 TATA-binding protein-i 99.9 1.3E-17 2.7E-22 168.7 46.3 457 86-602 167-688 (1233)
17 COG5657 CSE1 CAS/CSE protein i 99.9 3.3E-18 7.1E-23 173.2 38.2 525 17-575 6-587 (947)
18 KOG2022 Nuclear transport rece 99.9 1.7E-16 3.7E-21 160.1 47.0 542 11-596 3-672 (982)
19 KOG0213 Splicing factor 3b, su 99.9 6.7E-17 1.5E-21 159.4 42.9 562 8-617 356-971 (1172)
20 KOG1242 Protein containing ada 99.9 1.5E-17 3.2E-22 163.2 37.8 476 62-618 67-547 (569)
21 KOG2081 Nuclear transport regu 99.8 1.2E-16 2.6E-21 154.5 40.9 459 34-554 2-541 (559)
22 COG5215 KAP95 Karyopherin (imp 99.8 6.3E-16 1.4E-20 148.5 41.2 522 21-599 227-814 (858)
23 KOG1242 Protein containing ada 99.8 1.8E-15 3.8E-20 148.8 37.2 400 103-572 27-462 (569)
24 KOG0213 Splicing factor 3b, su 99.8 2E-14 4.3E-19 142.3 39.2 443 94-617 554-1047(1172)
25 KOG0212 Uncharacterized conser 99.7 4.3E-14 9.4E-19 136.1 37.0 410 32-509 16-445 (675)
26 PF01602 Adaptin_N: Adaptin N 99.7 3.1E-13 6.7E-18 143.3 42.7 437 18-547 45-522 (526)
27 PLN03200 cellulose synthase-in 99.7 2.3E-13 4.9E-18 154.0 42.1 532 26-595 200-812 (2102)
28 PF08506 Cse1: Cse1; InterPro 99.7 1.8E-15 3.9E-20 147.1 21.5 275 197-503 57-370 (370)
29 PTZ00429 beta-adaptin; Provisi 99.7 2.6E-12 5.7E-17 135.4 45.7 408 20-516 73-515 (746)
30 KOG0212 Uncharacterized conser 99.7 1.2E-13 2.7E-18 133.0 32.2 394 97-552 4-409 (675)
31 COG5181 HSH155 U2 snRNP splice 99.7 9.7E-13 2.1E-17 128.0 38.2 566 16-618 169-853 (975)
32 PF01602 Adaptin_N: Adaptin N 99.7 8E-13 1.7E-17 140.1 39.7 494 13-616 5-503 (526)
33 KOG0915 Uncharacterized conser 99.7 2.9E-13 6.3E-18 144.4 34.1 378 106-530 970-1366(1702)
34 KOG0166 Karyopherin (importin) 99.7 8.6E-14 1.9E-18 136.4 26.7 359 95-553 68-440 (514)
35 PTZ00429 beta-adaptin; Provisi 99.6 1.4E-10 3.1E-15 122.5 50.8 247 22-292 39-286 (746)
36 KOG0915 Uncharacterized conser 99.6 5.4E-12 1.2E-16 135.0 38.2 486 62-617 829-1367(1702)
37 PLN03200 cellulose synthase-in 99.6 3E-12 6.4E-17 145.2 37.0 431 46-550 402-861 (2102)
38 KOG0166 Karyopherin (importin) 99.6 7.3E-13 1.6E-17 129.9 24.0 349 62-510 77-438 (514)
39 COG5181 HSH155 U2 snRNP splice 99.6 4.1E-11 8.9E-16 116.9 33.7 389 93-554 521-917 (975)
40 KOG0211 Protein phosphatase 2A 99.5 3.3E-11 7.1E-16 125.7 33.2 479 17-549 160-664 (759)
41 KOG2020 Nuclear transport rece 99.5 3.7E-10 8E-15 121.3 41.0 582 11-618 6-710 (1041)
42 KOG0211 Protein phosphatase 2A 99.5 1.4E-10 3E-15 121.1 35.9 477 14-571 119-604 (759)
43 PRK13800 putative oxidoreducta 99.5 1.3E-11 2.9E-16 136.6 28.4 273 96-505 624-896 (897)
44 PRK13800 putative oxidoreducta 99.5 1.2E-11 2.6E-16 136.9 27.3 273 133-545 623-895 (897)
45 KOG1991 Nuclear transport rece 99.5 3.5E-09 7.6E-14 109.8 42.6 413 63-531 316-780 (1010)
46 PRK09687 putative lyase; Provi 99.5 1.9E-11 4.1E-16 115.3 23.9 253 133-505 25-279 (280)
47 PF10508 Proteasom_PSMB: Prote 99.5 1.1E-09 2.4E-14 113.0 37.4 357 98-509 43-421 (503)
48 PRK09687 putative lyase; Provi 99.4 5.4E-11 1.2E-15 112.2 24.3 252 182-545 25-278 (280)
49 KOG1992 Nuclear export recepto 99.4 5.2E-09 1.1E-13 106.1 36.5 517 15-610 87-684 (960)
50 COG5064 SRP1 Karyopherin (impo 99.4 3.9E-12 8.5E-17 115.2 12.6 354 133-551 73-445 (526)
51 KOG1059 Vesicle coat complex A 99.3 4.4E-08 9.5E-13 98.1 34.3 188 86-292 137-366 (877)
52 KOG1943 Beta-tubulin folding c 99.3 6.1E-08 1.3E-12 101.6 36.4 445 89-617 337-811 (1133)
53 COG5064 SRP1 Karyopherin (impo 99.2 1E-09 2.2E-14 99.9 18.8 351 62-510 82-445 (526)
54 PF10508 Proteasom_PSMB: Prote 99.2 3.6E-08 7.7E-13 102.0 32.9 380 20-463 43-463 (503)
55 KOG1060 Vesicle coat complex A 99.2 8.7E-08 1.9E-12 97.0 33.7 421 19-543 75-527 (968)
56 KOG1248 Uncharacterized conser 99.2 1.2E-06 2.5E-11 93.4 43.4 370 129-555 516-904 (1176)
57 KOG1240 Protein kinase contain 99.2 2.6E-09 5.7E-14 112.4 23.1 308 132-524 423-746 (1431)
58 KOG1062 Vesicle coat complex A 99.2 1.1E-06 2.4E-11 89.6 38.2 210 86-310 135-394 (866)
59 KOG1248 Uncharacterized conser 99.1 5.1E-07 1.1E-11 96.1 35.1 247 231-532 664-923 (1176)
60 KOG1061 Vesicle coat complex A 99.1 2.3E-07 5E-12 94.5 31.0 405 20-511 54-492 (734)
61 KOG4535 HEAT and armadillo rep 99.1 2.7E-07 5.8E-12 88.3 29.2 466 106-626 9-593 (728)
62 PF12755 Vac14_Fab1_bd: Vacuol 99.1 1.6E-09 3.4E-14 83.2 11.2 94 408-507 2-95 (97)
63 KOG1240 Protein kinase contain 99.1 2.5E-08 5.4E-13 105.3 22.4 286 108-466 438-729 (1431)
64 KOG1060 Vesicle coat complex A 99.0 1.1E-05 2.3E-10 82.3 37.3 396 13-511 36-461 (968)
65 COG5240 SEC21 Vesicle coat com 99.0 2.7E-06 5.8E-11 83.5 31.3 287 178-507 262-554 (898)
66 KOG1020 Sister chromatid cohes 99.0 2.1E-05 4.5E-10 86.0 40.0 406 96-555 819-1260(1692)
67 KOG1943 Beta-tubulin folding c 99.0 3E-05 6.5E-10 82.2 40.0 444 55-562 345-851 (1133)
68 PF03810 IBN_N: Importin-beta 99.0 3.8E-09 8.1E-14 79.0 8.7 67 36-103 1-76 (77)
69 KOG1059 Vesicle coat complex A 98.9 8.8E-06 1.9E-10 82.1 33.4 252 178-510 142-403 (877)
70 PF12348 CLASP_N: CLASP N term 98.9 4.5E-08 9.7E-13 91.1 16.7 181 362-555 18-212 (228)
71 KOG1062 Vesicle coat complex A 98.9 8E-06 1.7E-10 83.6 33.2 313 93-521 107-427 (866)
72 KOG1061 Vesicle coat complex A 98.9 3.2E-06 6.9E-11 86.4 30.4 466 18-552 16-489 (734)
73 PF12460 MMS19_C: RNAPII trans 98.9 1E-05 2.2E-10 82.2 33.0 352 110-528 19-414 (415)
74 PF12460 MMS19_C: RNAPII trans 98.8 1.6E-05 3.5E-10 80.7 32.0 198 366-570 205-413 (415)
75 PF12348 CLASP_N: CLASP N term 98.8 1.6E-07 3.4E-12 87.4 15.9 194 390-599 8-211 (228)
76 PF12755 Vac14_Fab1_bd: Vacuol 98.8 5.6E-08 1.2E-12 74.7 10.3 94 147-249 2-95 (97)
77 KOG4224 Armadillo repeat prote 98.8 1.2E-07 2.7E-12 87.4 13.8 374 111-551 65-448 (550)
78 KOG4224 Armadillo repeat prote 98.7 1.9E-06 4.1E-11 79.8 19.3 387 97-550 89-494 (550)
79 KOG2259 Uncharacterized conser 98.7 2.5E-05 5.4E-10 78.2 28.1 296 221-596 198-513 (823)
80 COG5240 SEC21 Vesicle coat com 98.7 1.5E-05 3.2E-10 78.4 26.0 310 70-461 242-554 (898)
81 KOG1077 Vesicle coat complex A 98.7 0.00015 3.2E-09 73.4 32.6 276 92-435 110-447 (938)
82 KOG1020 Sister chromatid cohes 98.7 0.00028 6.2E-09 77.6 36.1 164 110-289 794-958 (1692)
83 KOG1077 Vesicle coat complex A 98.7 0.0004 8.6E-09 70.4 34.1 256 19-293 115-400 (938)
84 KOG2259 Uncharacterized conser 98.6 0.00014 3E-09 73.1 29.7 300 132-510 199-513 (823)
85 PF13513 HEAT_EZ: HEAT-like re 98.6 6.4E-08 1.4E-12 66.6 4.8 55 406-460 1-55 (55)
86 KOG1078 Vesicle coat complex C 98.6 0.00044 9.5E-09 71.1 33.2 287 179-510 244-534 (865)
87 KOG2274 Predicted importin 9 [ 98.6 0.00054 1.2E-08 71.6 33.7 180 406-595 505-690 (1005)
88 cd00020 ARM Armadillo/beta-cat 98.5 3.4E-07 7.4E-12 75.5 8.4 110 390-507 8-119 (120)
89 COG5096 Vesicle coat complex, 98.5 0.0029 6.4E-08 66.7 37.3 160 32-209 36-195 (757)
90 PF08389 Xpo1: Exportin 1-like 98.5 4.2E-07 9E-12 78.2 6.8 135 107-245 2-148 (148)
91 COG5096 Vesicle coat complex, 98.4 0.0013 2.9E-08 69.1 33.2 135 18-161 58-196 (757)
92 KOG4535 HEAT and armadillo rep 98.4 0.00039 8.4E-09 67.3 26.3 467 62-574 7-584 (728)
93 PF12717 Cnd1: non-SMC mitotic 98.4 1.3E-05 2.8E-10 70.8 14.8 133 144-291 1-139 (178)
94 KOG1820 Microtubule-associated 98.4 9.4E-05 2E-09 79.0 23.3 208 385-609 249-459 (815)
95 COG5656 SXM1 Importin, protein 98.4 0.0051 1.1E-07 63.2 35.8 396 81-566 334-773 (970)
96 KOG1058 Vesicle coat complex C 98.3 0.0054 1.2E-07 63.1 35.9 403 14-530 22-443 (948)
97 PF12717 Cnd1: non-SMC mitotic 98.3 7.2E-05 1.6E-09 66.0 18.4 134 106-251 1-140 (178)
98 PF13513 HEAT_EZ: HEAT-like re 98.3 1.2E-06 2.6E-11 60.2 5.2 55 447-506 1-55 (55)
99 KOG4413 26S proteasome regulat 98.3 0.00024 5.3E-09 65.3 21.1 338 113-508 63-439 (524)
100 KOG2956 CLIP-associating prote 98.3 0.00015 3.2E-09 70.1 19.3 189 234-480 300-491 (516)
101 KOG1967 DNA repair/transcripti 98.2 0.011 2.3E-07 62.5 34.7 154 384-545 862-1020(1030)
102 KOG2021 Nuclear mRNA export fa 98.2 0.0089 1.9E-07 61.6 39.4 463 47-572 188-785 (980)
103 PF05004 IFRD: Interferon-rela 98.2 0.00091 2E-08 64.4 24.7 211 270-531 51-284 (309)
104 cd00020 ARM Armadillo/beta-cat 98.2 4.4E-06 9.4E-11 68.8 7.2 110 434-548 8-119 (120)
105 PF05804 KAP: Kinesin-associat 98.2 0.015 3.2E-07 62.0 36.9 360 112-549 268-649 (708)
106 PF05804 KAP: Kinesin-associat 98.2 0.00066 1.4E-08 71.9 24.4 303 130-509 330-650 (708)
107 PF13646 HEAT_2: HEAT repeats; 98.2 2.7E-05 5.8E-10 59.9 10.6 86 391-504 1-88 (88)
108 PF08506 Cse1: Cse1; InterPro 98.2 0.00092 2E-08 65.9 23.3 216 194-457 110-370 (370)
109 KOG2956 CLIP-associating prote 98.2 0.00031 6.7E-09 68.0 19.1 196 406-616 301-500 (516)
110 TIGR02270 conserved hypothetic 98.1 0.0018 3.9E-08 64.7 23.9 56 433-507 240-295 (410)
111 KOG1058 Vesicle coat complex C 98.0 0.0023 5E-08 65.7 23.6 224 179-465 242-466 (948)
112 KOG2032 Uncharacterized conser 98.0 0.0048 1E-07 60.5 24.9 116 177-292 255-372 (533)
113 PF05918 API5: Apoptosis inhib 98.0 0.019 4.1E-07 58.9 30.3 161 53-232 25-189 (556)
114 KOG1410 Nuclear transport rece 98.0 0.023 5.1E-07 57.8 42.6 145 14-162 4-159 (1082)
115 KOG1820 Microtubule-associated 98.0 0.00053 1.1E-08 73.4 19.5 189 224-466 256-447 (815)
116 PF04826 Arm_2: Armadillo-like 98.0 0.00039 8.4E-09 64.4 16.0 185 47-250 11-205 (254)
117 KOG4413 26S proteasome regulat 98.0 0.015 3.3E-07 53.9 26.2 299 144-510 53-379 (524)
118 KOG2032 Uncharacterized conser 98.0 0.0015 3.2E-08 63.9 19.9 144 406-554 231-376 (533)
119 KOG4653 Uncharacterized conser 98.0 0.0022 4.9E-08 66.8 22.1 146 368-521 785-931 (982)
120 KOG4653 Uncharacterized conser 97.9 0.0012 2.7E-08 68.7 20.0 199 133-389 729-927 (982)
121 PF13646 HEAT_2: HEAT repeats; 97.9 6.2E-05 1.3E-09 57.8 8.5 86 435-545 1-88 (88)
122 COG1413 FOG: HEAT repeat [Ener 97.9 0.0046 1E-07 61.3 23.1 111 366-509 195-305 (335)
123 KOG2022 Nuclear transport rece 97.9 0.052 1.1E-06 57.3 46.7 384 108-553 439-871 (982)
124 PF03378 CAS_CSE1: CAS/CSE pro 97.9 0.0029 6.3E-08 63.8 21.4 305 176-533 22-352 (435)
125 KOG1967 DNA repair/transcripti 97.9 0.00024 5.3E-09 74.2 13.8 149 130-285 866-1018(1030)
126 PF05918 API5: Apoptosis inhib 97.9 0.018 4E-07 59.0 26.8 158 98-273 28-189 (556)
127 KOG1078 Vesicle coat complex C 97.9 0.025 5.4E-07 58.8 27.6 283 94-461 246-531 (865)
128 PF05004 IFRD: Interferon-rela 97.9 0.0088 1.9E-07 57.7 23.4 199 223-465 45-260 (309)
129 COG1413 FOG: HEAT repeat [Ener 97.9 0.017 3.8E-07 57.2 26.5 275 94-504 44-331 (335)
130 KOG1525 Sister chromatid cohes 97.8 0.018 3.9E-07 64.9 28.2 341 92-509 47-406 (1266)
131 KOG0168 Putative ubiquitin fus 97.8 0.021 4.5E-07 59.9 25.8 181 62-252 179-366 (1051)
132 KOG1525 Sister chromatid cohes 97.8 0.13 2.8E-06 58.3 40.6 365 62-496 61-441 (1266)
133 PF14500 MMS19_N: Dos2-interac 97.8 0.018 3.8E-07 54.0 23.0 149 135-292 3-154 (262)
134 PF04826 Arm_2: Armadillo-like 97.7 0.0012 2.5E-08 61.3 14.6 189 392-598 15-209 (254)
135 PF02985 HEAT: HEAT repeat; I 97.7 5.5E-05 1.2E-09 44.4 3.4 30 434-463 1-30 (31)
136 KOG0946 ER-Golgi vesicle-tethe 97.7 0.1 2.2E-06 54.5 31.0 199 95-293 24-243 (970)
137 KOG1293 Proteins containing ar 97.7 0.092 2E-06 53.8 34.1 138 366-510 392-535 (678)
138 KOG1293 Proteins containing ar 97.7 0.078 1.7E-06 54.2 27.0 137 406-548 391-532 (678)
139 PLN03076 ARF guanine nucleotid 97.6 0.13 2.8E-06 60.8 32.3 333 181-574 1138-1513(1780)
140 PF03378 CAS_CSE1: CAS/CSE pro 97.6 0.0044 9.5E-08 62.5 18.3 213 405-622 43-258 (435)
141 PF08167 RIX1: rRNA processing 97.6 0.0033 7.1E-08 54.5 15.2 135 428-570 20-162 (165)
142 KOG1993 Nuclear transport rece 97.6 0.12 2.7E-06 54.0 35.5 216 64-292 410-645 (978)
143 KOG2025 Chromosome condensatio 97.6 0.019 4.1E-07 58.9 21.6 253 14-289 4-292 (892)
144 PF10274 ParcG: Parkin co-regu 97.5 0.0011 2.3E-08 57.1 10.6 94 477-573 36-133 (183)
145 KOG2933 Uncharacterized conser 97.5 0.0035 7.5E-08 57.8 14.2 148 391-552 90-237 (334)
146 KOG0414 Chromosome condensatio 97.5 0.22 4.8E-06 54.6 35.9 186 372-574 898-1103(1251)
147 TIGR02270 conserved hypothetic 97.5 0.017 3.7E-07 57.8 19.7 139 27-207 67-205 (410)
148 PLN03076 ARF guanine nucleotid 97.5 0.17 3.6E-06 59.9 30.1 371 85-489 1081-1512(1780)
149 PF08167 RIX1: rRNA processing 97.4 0.0052 1.1E-07 53.2 13.7 140 385-529 21-164 (165)
150 KOG0891 DNA-dependent protein 97.4 0.27 6E-06 59.3 31.2 246 32-292 460-720 (2341)
151 PF11865 DUF3385: Domain of un 97.4 0.0033 7.1E-08 54.0 12.0 145 387-550 8-158 (160)
152 KOG0168 Putative ubiquitin fus 97.4 0.024 5.3E-07 59.3 19.5 157 430-596 208-366 (1051)
153 KOG0413 Uncharacterized conser 97.3 0.34 7.4E-06 51.9 30.0 135 406-556 945-1080(1529)
154 PF02985 HEAT: HEAT repeat; I 97.3 0.00052 1.1E-08 40.3 4.2 31 480-510 1-31 (31)
155 KOG1517 Guanine nucleotide bin 97.3 0.03 6.5E-07 60.1 19.7 207 32-256 486-738 (1387)
156 PF13251 DUF4042: Domain of un 97.3 0.0032 6.8E-08 54.8 10.6 145 407-551 1-176 (182)
157 KOG2062 26S proteasome regulat 97.2 0.36 7.8E-06 50.3 25.7 120 398-539 564-684 (929)
158 PF10274 ParcG: Parkin co-regu 97.2 0.0045 9.7E-08 53.3 10.6 120 432-555 37-170 (183)
159 KOG2160 Armadillo/beta-catenin 97.2 0.037 8.1E-07 52.6 17.5 144 406-554 97-245 (342)
160 KOG2062 26S proteasome regulat 97.2 0.016 3.5E-07 59.7 15.9 167 43-237 514-681 (929)
161 PF10521 DUF2454: Protein of u 97.2 0.0065 1.4E-07 58.0 12.4 148 472-619 112-278 (282)
162 PF12719 Cnd3: Nuclear condens 97.1 0.11 2.4E-06 50.3 20.9 127 415-550 6-144 (298)
163 KOG1949 Uncharacterized conser 97.1 0.035 7.5E-07 57.0 17.0 203 81-291 113-331 (1005)
164 PF14500 MMS19_N: Dos2-interac 97.1 0.17 3.7E-06 47.5 20.8 227 366-613 14-257 (262)
165 COG5218 YCG1 Chromosome conden 97.1 0.086 1.9E-06 53.1 19.1 174 13-204 9-194 (885)
166 KOG4524 Uncharacterized conser 97.1 0.25 5.4E-06 53.1 23.3 99 385-490 799-900 (1014)
167 KOG0414 Chromosome condensatio 97.0 0.012 2.5E-07 64.0 13.5 178 112-316 896-1082(1251)
168 KOG2933 Uncharacterized conser 97.0 0.0083 1.8E-07 55.3 10.6 134 364-511 101-237 (334)
169 PF08569 Mo25: Mo25-like; Int 97.0 0.4 8.7E-06 46.6 24.5 198 94-303 77-295 (335)
170 PF12719 Cnd3: Nuclear condens 97.0 0.15 3.3E-06 49.3 20.0 118 92-210 26-144 (298)
171 KOG0392 SNF2 family DNA-depend 96.9 0.018 3.8E-07 63.0 14.1 175 367-552 749-928 (1549)
172 KOG0392 SNF2 family DNA-depend 96.9 0.083 1.8E-06 58.1 18.8 159 62-228 88-256 (1549)
173 KOG1243 Protein kinase [Genera 96.9 0.016 3.5E-07 59.7 12.9 255 188-510 262-517 (690)
174 KOG2025 Chromosome condensatio 96.9 0.42 9.1E-06 49.6 22.4 107 48-156 81-189 (892)
175 PF13251 DUF4042: Domain of un 96.8 0.032 7E-07 48.6 12.4 146 108-253 1-177 (182)
176 PF04118 Dopey_N: Dopey, N-ter 96.8 0.53 1.1E-05 45.1 23.3 165 106-292 2-168 (307)
177 KOG1517 Guanine nucleotide bin 96.7 0.094 2E-06 56.5 17.3 101 406-510 571-673 (1387)
178 KOG1949 Uncharacterized conser 96.7 1 2.2E-05 46.9 23.7 148 224-421 177-331 (1005)
179 cd00256 VATPase_H VATPase_H, r 96.7 0.86 1.9E-05 45.8 27.1 194 47-252 52-260 (429)
180 KOG1822 Uncharacterized conser 96.6 2.1 4.5E-05 50.0 37.4 238 8-251 869-1128(2067)
181 PF01603 B56: Protein phosphat 96.6 0.43 9.4E-06 48.3 20.9 231 15-258 133-378 (409)
182 KOG1243 Protein kinase [Genera 96.6 0.038 8.2E-07 57.1 13.1 151 128-292 327-477 (690)
183 KOG0567 HEAT repeat-containing 96.5 0.62 1.3E-05 42.4 20.6 89 393-509 191-281 (289)
184 PF11865 DUF3385: Domain of un 96.5 0.023 5.1E-07 48.8 9.6 147 431-594 8-157 (160)
185 KOG2137 Protein kinase [Signal 96.5 0.4 8.6E-06 50.1 19.6 255 12-290 236-495 (700)
186 PF13001 Ecm29: Proteasome sta 96.5 1.4 2.9E-05 46.2 31.8 82 17-104 25-113 (501)
187 PF08569 Mo25: Mo25-like; Int 96.5 0.61 1.3E-05 45.4 20.1 185 62-252 87-285 (335)
188 COG5218 YCG1 Chromosome conden 96.5 1.2 2.6E-05 45.4 21.8 105 176-284 87-192 (885)
189 PF08623 TIP120: TATA-binding 96.5 0.038 8.2E-07 47.2 10.2 117 428-552 4-150 (169)
190 COG5116 RPN2 26S proteasome re 96.4 0.049 1.1E-06 54.5 12.3 122 406-546 566-688 (926)
191 PF08064 UME: UME (NUC010) dom 96.4 0.028 6.2E-07 44.4 8.9 98 473-573 5-106 (107)
192 KOG0567 HEAT repeat-containing 96.4 0.69 1.5E-05 42.1 20.2 115 406-555 170-286 (289)
193 PF08064 UME: UME (NUC010) dom 96.4 0.064 1.4E-06 42.4 10.7 98 214-314 4-105 (107)
194 PF13001 Ecm29: Proteasome sta 96.3 0.19 4.1E-06 52.4 16.9 211 62-290 248-487 (501)
195 cd08050 TAF6 TATA Binding Prot 96.3 0.17 3.7E-06 49.7 15.5 158 222-421 179-340 (343)
196 KOG2549 Transcription initiati 96.3 0.53 1.2E-05 47.5 18.3 174 221-442 207-392 (576)
197 KOG2137 Protein kinase [Signal 96.2 1.3 2.8E-05 46.5 21.6 128 369-510 368-498 (700)
198 PF10521 DUF2454: Protein of u 96.2 0.088 1.9E-06 50.3 12.8 145 126-275 114-278 (282)
199 PF01603 B56: Protein phosphat 96.1 1.9 4.1E-05 43.7 23.2 263 140-463 99-371 (409)
200 cd00256 VATPase_H VATPase_H, r 96.1 1.9 4E-05 43.5 26.2 185 10-210 67-259 (429)
201 PF10363 DUF2435: Protein of u 96.1 0.11 2.4E-06 39.5 10.0 70 392-465 6-75 (92)
202 KOG0891 DNA-dependent protein 96.1 4.2 9.2E-05 49.8 27.4 439 93-615 481-941 (2341)
203 smart00802 UME Domain in UVSB 96.0 0.1 2.2E-06 41.0 9.6 98 213-313 3-104 (107)
204 KOG2160 Armadillo/beta-catenin 96.0 0.2 4.3E-06 47.8 13.3 143 142-292 94-241 (342)
205 smart00802 UME Domain in UVSB 95.9 0.065 1.4E-06 42.1 8.4 97 473-572 5-105 (107)
206 KOG2122 Beta-catenin-binding p 95.8 3.8 8.3E-05 46.7 23.5 71 389-463 530-602 (2195)
207 KOG2081 Nuclear transport regu 95.8 2.7 5.8E-05 42.8 34.0 264 192-524 259-553 (559)
208 KOG0803 Predicted E3 ubiquitin 95.8 1.3 2.8E-05 50.8 20.6 111 179-289 40-151 (1312)
209 COG5116 RPN2 26S proteasome re 95.7 0.33 7.1E-06 48.9 14.2 124 94-236 552-677 (926)
210 PF10363 DUF2435: Protein of u 95.7 0.11 2.4E-06 39.5 8.7 75 132-216 4-79 (92)
211 KOG2149 Uncharacterized conser 95.7 0.25 5.5E-06 47.9 12.9 133 393-532 62-194 (393)
212 COG5098 Chromosome condensatio 95.5 0.23 5.1E-06 51.2 12.5 128 371-508 282-415 (1128)
213 PF12054 DUF3535: Domain of un 95.4 1.2 2.5E-05 45.6 17.4 58 364-424 100-158 (441)
214 KOG3961 Uncharacterized conser 95.3 0.083 1.8E-06 45.9 7.5 96 477-575 112-210 (262)
215 KOG4199 Uncharacterized conser 95.3 2.7 5.8E-05 39.9 30.1 313 127-506 104-442 (461)
216 PF03224 V-ATPase_H_N: V-ATPas 95.1 2.8 6.2E-05 40.9 18.7 197 47-254 54-273 (312)
217 KOG4500 Rho/Rac GTPase guanine 95.1 3.8 8.3E-05 40.3 21.6 111 388-507 314-430 (604)
218 PF08623 TIP120: TATA-binding 94.9 0.56 1.2E-05 40.2 11.4 111 128-249 6-146 (169)
219 PF03224 V-ATPase_H_N: V-ATPas 94.9 1.6 3.5E-05 42.6 16.4 180 394-585 110-304 (312)
220 PF01347 Vitellogenin_N: Lipop 94.9 2.3 4.9E-05 46.3 19.4 119 105-246 447-585 (618)
221 PF08767 CRM1_C: CRM1 C termin 94.9 2.9 6.3E-05 40.8 17.8 145 408-553 43-198 (319)
222 PF11864 DUF3384: Domain of un 94.8 5.8 0.00013 41.2 34.9 291 108-461 5-329 (464)
223 PF05536 Neurochondrin: Neuroc 94.8 6.6 0.00014 41.5 34.7 232 47-292 4-262 (543)
224 cd08050 TAF6 TATA Binding Prot 94.7 0.61 1.3E-05 45.9 12.9 116 385-505 210-337 (343)
225 KOG2149 Uncharacterized conser 94.7 0.91 2E-05 44.2 13.5 130 435-571 60-190 (393)
226 KOG1851 Uncharacterized conser 94.7 11 0.00024 43.6 34.1 172 368-550 1504-1679(1710)
227 KOG2759 Vacuolar H+-ATPase V1 94.6 5 0.00011 39.4 25.1 198 46-253 63-274 (442)
228 PF04510 DUF577: Family of unk 94.5 2.6 5.7E-05 35.9 15.3 146 93-251 3-165 (174)
229 PF04118 Dopey_N: Dopey, N-ter 94.5 1.4 3E-05 42.3 14.1 146 406-555 25-173 (307)
230 PF01347 Vitellogenin_N: Lipop 94.4 2.7 5.8E-05 45.7 18.4 144 130-288 430-586 (618)
231 PF14664 RICTOR_N: Rapamycin-i 94.4 6.1 0.00013 39.4 25.0 237 126-421 20-269 (371)
232 KOG2549 Transcription initiati 94.3 3.4 7.4E-05 42.0 16.6 141 387-532 237-395 (576)
233 KOG0413 Uncharacterized conser 94.3 10 0.00022 41.5 29.8 125 385-526 964-1089(1529)
234 COG5095 TAF6 Transcription ini 94.1 1.9 4.1E-05 40.0 13.4 124 406-534 250-386 (450)
235 COG5095 TAF6 Transcription ini 94.1 2.4 5.2E-05 39.4 13.9 157 443-615 208-381 (450)
236 PF07571 DUF1546: Protein of u 94.1 0.24 5.1E-06 37.9 6.6 60 362-422 17-79 (92)
237 PF14664 RICTOR_N: Rapamycin-i 94.0 7.1 0.00015 38.9 19.5 215 62-292 36-270 (371)
238 smart00638 LPD_N Lipoprotein N 94.0 3 6.6E-05 44.8 17.4 139 46-206 391-542 (574)
239 PF00514 Arm: Armadillo/beta-c 93.9 0.12 2.6E-06 32.5 4.1 28 434-461 13-40 (41)
240 KOG0946 ER-Golgi vesicle-tethe 93.9 11 0.00023 40.4 36.9 286 10-311 76-417 (970)
241 KOG0889 Histone acetyltransfer 93.8 25 0.00055 44.6 33.3 162 131-292 984-1156(3550)
242 cd03568 VHS_STAM VHS domain fa 93.6 1.8 3.9E-05 36.4 11.7 79 476-554 34-115 (144)
243 PF12530 DUF3730: Protein of u 93.6 6 0.00013 36.6 20.7 187 27-235 13-217 (234)
244 PF12830 Nipped-B_C: Sister ch 93.6 2.1 4.6E-05 38.0 12.9 124 178-310 6-139 (187)
245 cd03567 VHS_GGA VHS domain fam 93.3 2.2 4.8E-05 35.5 11.6 76 478-553 37-120 (139)
246 PF12074 DUF3554: Domain of un 93.3 9.2 0.0002 37.8 20.0 218 32-257 3-242 (339)
247 PF08767 CRM1_C: CRM1 C termin 93.1 9.4 0.0002 37.3 20.9 138 371-508 92-244 (319)
248 smart00638 LPD_N Lipoprotein N 93.0 10 0.00023 40.7 19.5 128 96-246 396-541 (574)
249 PF08389 Xpo1: Exportin 1-like 92.8 0.74 1.6E-05 39.1 8.7 124 367-503 4-148 (148)
250 KOG1048 Neural adherens juncti 92.8 16 0.00034 39.2 24.1 98 406-509 533-642 (717)
251 PF11698 V-ATPase_H_C: V-ATPas 92.8 0.64 1.4E-05 37.1 7.3 73 130-209 42-115 (119)
252 KOG0803 Predicted E3 ubiquitin 92.7 12 0.00027 43.2 19.8 89 223-313 43-132 (1312)
253 cd03561 VHS VHS domain family; 92.7 2.7 5.8E-05 34.9 11.4 79 476-554 34-117 (133)
254 COG5098 Chromosome condensatio 92.6 1.5 3.2E-05 45.6 11.4 109 95-212 301-418 (1128)
255 PF11698 V-ATPase_H_C: V-ATPas 92.5 0.68 1.5E-05 36.9 7.1 70 433-508 43-115 (119)
256 cd03568 VHS_STAM VHS domain fa 92.5 3.8 8.2E-05 34.4 12.0 91 371-466 21-114 (144)
257 PF00514 Arm: Armadillo/beta-c 92.4 0.32 6.8E-06 30.6 4.2 29 479-507 12-40 (41)
258 PF11707 Npa1: Ribosome 60S bi 92.1 12 0.00026 36.8 17.0 175 109-293 42-239 (330)
259 PF12830 Nipped-B_C: Sister ch 91.9 8.6 0.00019 34.1 14.5 77 130-218 7-83 (187)
260 cd03561 VHS VHS domain family; 91.8 4.9 0.00011 33.3 11.9 106 406-523 18-129 (133)
261 KOG2011 Sister chromatid cohes 91.5 18 0.0004 40.5 18.6 142 130-288 281-432 (1048)
262 cd03569 VHS_Hrs_Vps27p VHS dom 90.8 2.1 4.5E-05 35.9 8.8 78 477-554 39-119 (142)
263 PF00790 VHS: VHS domain; Int 90.0 11 0.00023 31.7 12.5 80 474-553 37-122 (140)
264 KOG4500 Rho/Rac GTPase guanine 89.9 22 0.00048 35.3 19.5 227 10-251 221-476 (604)
265 PF09324 DUF1981: Domain of un 89.9 2 4.3E-05 32.4 7.1 70 177-246 14-84 (86)
266 smart00288 VHS Domain present 89.8 8.8 0.00019 31.8 11.6 79 475-553 33-115 (133)
267 KOG0889 Histone acetyltransfer 89.6 73 0.0016 40.9 34.6 167 93-266 984-1171(3550)
268 PF12397 U3snoRNP10: U3 small 89.6 7.1 0.00015 31.7 10.9 74 429-510 2-76 (121)
269 KOG2759 Vacuolar H+-ATPase V1 89.5 23 0.0005 35.0 24.3 70 433-508 366-438 (442)
270 PF12231 Rif1_N: Rap1-interact 89.5 25 0.00054 35.3 27.4 169 406-574 148-329 (372)
271 PF12530 DUF3730: Protein of u 89.2 18 0.0004 33.4 20.4 206 229-492 9-216 (234)
272 cd03569 VHS_Hrs_Vps27p VHS dom 89.0 8.9 0.00019 32.2 11.2 97 406-513 22-119 (142)
273 KOG1048 Neural adherens juncti 89.0 36 0.00079 36.6 21.3 376 98-506 238-682 (717)
274 PF08713 DNA_alkylation: DNA a 89.0 16 0.00034 33.3 14.0 158 32-219 35-194 (213)
275 PF09324 DUF1981: Domain of un 88.9 2.6 5.6E-05 31.8 7.1 67 221-287 17-84 (86)
276 PF12783 Sec7_N: Guanine nucle 88.8 7.3 0.00016 33.9 11.1 108 144-251 35-147 (168)
277 cd03567 VHS_GGA VHS domain fam 88.8 12 0.00026 31.2 11.7 99 399-512 15-120 (139)
278 KOG2973 Uncharacterized conser 88.7 11 0.00024 35.6 12.1 105 393-508 7-111 (353)
279 PF00790 VHS: VHS domain; Int 88.3 7.1 0.00015 32.7 10.3 78 386-466 39-122 (140)
280 COG5537 IRR1 Cohesin [Cell div 88.1 20 0.00044 37.1 14.5 100 141-251 285-387 (740)
281 PF08713 DNA_alkylation: DNA a 88.1 15 0.00032 33.4 13.2 69 388-465 119-187 (213)
282 PF14631 FancD2: Fanconi anaem 87.6 71 0.0015 38.3 22.8 133 64-208 393-541 (1426)
283 PF11935 DUF3453: Domain of un 87.4 24 0.00053 32.7 15.2 124 442-571 2-161 (239)
284 PF11701 UNC45-central: Myosin 87.3 4.7 0.0001 34.6 8.7 141 98-247 8-156 (157)
285 PF12765 Cohesin_HEAT: HEAT re 86.7 1.3 2.8E-05 27.9 3.7 41 415-457 2-42 (42)
286 KOG4199 Uncharacterized conser 86.7 31 0.00067 33.1 25.9 87 444-535 341-430 (461)
287 PF14631 FancD2: Fanconi anaem 86.5 82 0.0018 37.8 26.0 116 427-551 429-544 (1426)
288 KOG1848 Uncharacterized conser 86.2 73 0.0016 37.0 21.1 166 104-292 853-1027(1610)
289 PF12074 DUF3554: Domain of un 86.2 37 0.00081 33.6 15.8 193 90-292 19-236 (339)
290 cd03572 ENTH_epsin_related ENT 86.1 11 0.00024 30.5 9.5 75 474-548 33-118 (122)
291 KOG0929 Guanine nucleotide exc 86.0 81 0.0017 37.3 19.5 159 104-270 1048-1224(1514)
292 PF08146 BP28CT: BP28CT (NUC21 86.0 5.7 0.00012 33.8 8.4 106 514-620 4-122 (153)
293 PF04388 Hamartin: Hamartin pr 86.0 36 0.00079 37.1 16.4 153 96-271 7-161 (668)
294 PF12612 TFCD_C: Tubulin foldi 85.9 24 0.00052 31.5 12.9 133 406-550 21-159 (193)
295 smart00288 VHS Domain present 85.8 19 0.00041 29.8 12.0 91 371-466 21-115 (133)
296 PF11864 DUF3384: Domain of un 85.7 48 0.001 34.5 32.2 327 195-569 5-350 (464)
297 PF12333 Ipi1_N: Rix1 complex 84.6 4.3 9.3E-05 31.8 6.5 61 472-532 4-65 (102)
298 PF12783 Sec7_N: Guanine nucle 84.3 27 0.00058 30.3 12.2 100 193-292 35-147 (168)
299 cd03572 ENTH_epsin_related ENT 84.2 21 0.00045 28.9 11.0 73 178-250 36-119 (122)
300 PF12765 Cohesin_HEAT: HEAT re 84.0 2.1 4.5E-05 27.0 3.7 26 179-204 17-42 (42)
301 PF12333 Ipi1_N: Rix1 complex 83.9 5.3 0.00011 31.3 6.7 60 213-272 3-63 (102)
302 smart00185 ARM Armadillo/beta- 83.8 1.7 3.6E-05 27.0 3.3 28 434-461 13-40 (41)
303 PF11701 UNC45-central: Myosin 83.6 3.9 8.6E-05 35.0 6.5 131 366-505 20-156 (157)
304 KOG1837 Uncharacterized conser 83.5 1E+02 0.0022 36.4 19.2 99 410-517 1522-1620(1621)
305 PF07571 DUF1546: Protein of u 83.5 6.6 0.00014 30.0 7.0 59 444-507 17-77 (92)
306 PF05536 Neurochondrin: Neuroc 83.4 66 0.0014 34.1 35.8 138 145-292 71-214 (543)
307 KOG1837 Uncharacterized conser 83.2 1E+02 0.0023 36.3 29.3 79 477-555 1539-1617(1621)
308 COG5231 VMA13 Vacuolar H+-ATPa 82.4 47 0.001 31.7 18.4 72 433-508 356-428 (432)
309 smart00185 ARM Armadillo/beta- 82.0 2.7 6E-05 25.9 3.8 28 480-507 13-40 (41)
310 KOG3687 Tuberin - Rap/ran-GTPa 81.0 99 0.0021 34.5 20.1 77 444-528 441-522 (1697)
311 PF12054 DUF3535: Domain of un 81.0 71 0.0015 32.9 22.2 78 107-191 101-179 (441)
312 KOG3961 Uncharacterized conser 80.7 4.7 0.0001 35.5 5.7 90 221-310 114-204 (262)
313 cd03565 VHS_Tom1 VHS domain fa 80.6 33 0.00071 28.7 11.8 78 477-554 36-120 (141)
314 PF12231 Rif1_N: Rap1-interact 80.4 67 0.0015 32.2 30.4 280 144-509 59-353 (372)
315 KOG2122 Beta-catenin-binding p 79.2 1.4E+02 0.0031 35.2 19.9 100 406-511 452-562 (2195)
316 KOG1822 Uncharacterized conser 79.1 1.6E+02 0.0034 35.8 39.4 187 98-292 56-249 (2067)
317 PF04388 Hamartin: Hamartin pr 78.6 32 0.0007 37.5 12.6 94 429-529 66-161 (668)
318 KOG2213 Apoptosis inhibitor 5/ 78.5 72 0.0016 31.5 20.6 234 66-318 39-296 (460)
319 PF11919 DUF3437: Domain of un 77.7 7.1 0.00015 29.6 5.3 56 406-462 3-58 (90)
320 KOG2199 Signal transducing ada 76.2 32 0.0007 33.6 10.3 109 406-526 26-137 (462)
321 KOG2199 Signal transducing ada 75.9 46 0.00099 32.7 11.1 95 364-466 25-122 (462)
322 PF10350 DUF2428: Putative dea 75.8 60 0.0013 30.5 12.2 139 477-617 94-251 (255)
323 PF14668 RICTOR_V: Rapamycin-i 75.6 5.7 0.00012 28.7 4.1 54 408-463 3-59 (73)
324 PF03130 HEAT_PBS: PBS lyase H 75.3 3.6 7.9E-05 22.9 2.5 14 449-462 1-14 (27)
325 cd00197 VHS_ENTH_ANTH VHS, ENT 74.8 20 0.00042 28.8 7.7 77 126-208 32-114 (115)
326 cd00197 VHS_ENTH_ANTH VHS, ENT 74.3 33 0.00071 27.5 8.9 73 385-460 33-113 (115)
327 KOG1789 Endocytosis protein RM 74.1 1.6E+02 0.0036 33.4 22.0 165 147-318 1741-1911(2235)
328 KOG1087 Cytosolic sorting prot 74.1 19 0.00041 36.9 8.8 76 478-553 37-116 (470)
329 PF12397 U3snoRNP10: U3 small 73.9 27 0.00059 28.3 8.4 72 385-462 2-74 (121)
330 COG5537 IRR1 Cohesin [Cell div 73.1 33 0.00071 35.7 10.0 105 186-292 281-387 (740)
331 cd06561 AlkD_like A new struct 73.1 41 0.00089 30.0 10.3 66 392-465 108-173 (197)
332 cd03565 VHS_Tom1 VHS domain fa 72.9 55 0.0012 27.4 12.0 91 371-466 22-119 (141)
333 KOG3036 Protein involved in ce 72.3 80 0.0017 29.0 11.5 110 182-292 126-248 (293)
334 PF04510 DUF577: Family of unk 71.9 65 0.0014 27.8 11.3 149 131-291 3-164 (174)
335 PF04078 Rcd1: Cell differenti 71.0 91 0.002 29.1 17.9 100 193-293 109-220 (262)
336 KOG0929 Guanine nucleotide exc 70.2 2.4E+02 0.0053 33.7 17.8 235 48-292 1036-1299(1514)
337 PF12612 TFCD_C: Tubulin foldi 70.1 81 0.0017 28.1 12.2 154 430-595 4-159 (193)
338 KOG1566 Conserved protein Mo25 70.0 1.1E+02 0.0023 29.4 16.6 155 93-252 126-288 (342)
339 PF14225 MOR2-PAG1_C: Cell mor 69.3 1E+02 0.0022 29.1 21.3 145 389-553 111-258 (262)
340 PF03542 Tuberin: Tuberin; In 68.9 1.3E+02 0.0027 29.9 15.8 117 194-315 211-329 (356)
341 cd06561 AlkD_like A new struct 68.8 85 0.0019 27.9 12.7 76 436-521 108-183 (197)
342 PF03542 Tuberin: Tuberin; In 67.9 1.3E+02 0.0029 29.8 15.2 92 447-548 211-302 (356)
343 PF14961 BROMI: Broad-minded p 65.0 89 0.0019 35.9 11.9 71 96-166 164-237 (1296)
344 PF14225 MOR2-PAG1_C: Cell mor 64.8 1.3E+02 0.0028 28.5 20.5 173 127-315 60-238 (262)
345 PF14668 RICTOR_V: Rapamycin-i 63.9 22 0.00048 25.7 5.0 53 450-509 4-59 (73)
346 PF11935 DUF3453: Domain of un 62.2 1.3E+02 0.0029 27.9 14.6 85 181-265 44-160 (239)
347 PF08161 NUC173: NUC173 domain 61.7 39 0.00084 30.3 7.3 63 492-554 13-75 (198)
348 PF04078 Rcd1: Cell differenti 61.7 43 0.00094 31.1 7.7 101 145-252 110-220 (262)
349 PF12422 Condensin2nSMC: Conde 61.6 96 0.0021 26.4 9.4 93 67-159 45-147 (152)
350 cd07064 AlkD_like_1 A new stru 61.5 1.3E+02 0.0027 27.3 17.5 160 32-219 28-189 (208)
351 PF14222 MOR2-PAG1_N: Cell mor 61.4 2.3E+02 0.005 30.3 35.3 214 85-311 27-275 (552)
352 smart00567 EZ_HEAT E-Z type HE 61.0 14 0.00031 20.9 3.1 16 406-421 1-16 (30)
353 PF14868 DUF4487: Domain of un 60.6 2.3E+02 0.0051 30.1 23.7 86 377-464 467-554 (559)
354 KOG4524 Uncharacterized conser 60.6 2.9E+02 0.0062 31.1 32.7 75 179-253 277-351 (1014)
355 PF08161 NUC173: NUC173 domain 60.5 1.3E+02 0.0028 27.0 15.8 58 235-292 14-71 (198)
356 KOG1789 Endocytosis protein RM 59.5 3.2E+02 0.0069 31.3 20.3 95 196-292 1741-1842(2235)
357 PF11841 DUF3361: Domain of un 57.6 43 0.00093 28.6 6.4 91 47-138 57-147 (160)
358 KOG1848 Uncharacterized conser 57.2 3.9E+02 0.0085 31.6 19.7 250 20-289 847-1130(1610)
359 PF07539 DRIM: Down-regulated 56.6 86 0.0019 26.3 8.1 30 179-208 16-45 (141)
360 KOG2973 Uncharacterized conser 56.6 1.9E+02 0.0041 27.8 20.0 103 96-209 6-111 (353)
361 PF05327 RRN3: RNA polymerase 56.4 2.8E+02 0.0061 29.7 19.4 51 92-143 72-123 (563)
362 PF14228 MOR2-PAG1_mid: Cell m 55.3 4E+02 0.0088 31.2 32.6 71 433-509 503-573 (1120)
363 PF14961 BROMI: Broad-minded p 54.4 2E+02 0.0044 33.3 12.4 125 61-191 172-316 (1296)
364 KOG1222 Kinesin associated pro 53.8 2.6E+02 0.0057 28.6 25.5 129 370-509 521-664 (791)
365 COG4912 Predicted DNA alkylati 53.8 76 0.0017 28.6 7.6 83 375-465 103-186 (222)
366 PF11707 Npa1: Ribosome 60S bi 53.5 2.3E+02 0.005 27.9 17.6 172 62-250 37-237 (330)
367 KOG2011 Sister chromatid cohes 53.2 4.1E+02 0.0088 30.6 21.2 85 219-305 280-369 (1048)
368 KOG1877 Putative transmembrane 52.9 3.6E+02 0.0079 29.9 15.2 56 237-292 72-127 (819)
369 PF12243 CTK3: CTD kinase subu 52.6 1.4E+02 0.003 25.0 11.8 101 436-550 11-120 (139)
370 PF05997 Nop52: Nucleolar prot 52.5 1.4E+02 0.003 27.3 9.5 92 484-575 5-98 (217)
371 PF09759 Atx10homo_assoc: Spin 51.9 57 0.0012 25.5 5.8 57 409-466 3-63 (102)
372 PF09759 Atx10homo_assoc: Spin 51.1 29 0.00063 27.0 4.1 56 450-511 3-62 (102)
373 cd03562 CID CID (CTD-Interacti 50.7 1.3E+02 0.0027 24.0 9.1 43 475-517 33-75 (114)
374 PF13981 SopA: SopA-like centr 50.3 1.5E+02 0.0032 24.7 9.2 58 235-292 67-124 (135)
375 COG5369 Uncharacterized conser 50.3 1.2E+02 0.0026 31.5 9.1 136 408-549 405-545 (743)
376 KOG1087 Cytosolic sorting prot 50.2 2.4E+02 0.0051 29.2 11.4 103 396-512 12-116 (470)
377 KOG2256 Predicted protein invo 49.8 3.6E+02 0.0077 28.9 12.9 184 425-616 233-434 (661)
378 KOG1877 Putative transmembrane 48.0 4.3E+02 0.0094 29.4 14.4 243 369-622 74-355 (819)
379 PF01465 GRIP: GRIP domain; I 47.9 42 0.0009 21.7 3.8 35 90-124 4-38 (46)
380 PF10193 Telomere_reg-2: Telom 47.4 1.1E+02 0.0023 24.6 7.0 80 182-261 5-90 (114)
381 COG5101 CRM1 Importin beta-rel 46.7 3.9E+02 0.0085 28.5 31.0 79 176-254 566-652 (1053)
382 KOG1851 Uncharacterized conser 44.1 6.6E+02 0.014 30.4 31.3 140 406-554 1501-1643(1710)
383 PF07539 DRIM: Down-regulated 43.2 2E+02 0.0042 24.2 8.2 81 478-571 16-96 (141)
384 PF10350 DUF2428: Putative dea 42.3 3E+02 0.0064 25.9 14.6 138 178-315 94-250 (255)
385 cd00870 PI3Ka_III Phosphoinosi 41.9 2.3E+02 0.005 24.5 9.9 118 7-143 4-124 (166)
386 KOG2038 CAATT-binding transcri 41.7 5.1E+02 0.011 28.5 28.0 72 219-294 302-374 (988)
387 PHA02836 putative transmembran 41.4 18 0.00039 29.0 1.7 42 583-624 105-147 (153)
388 PF14868 DUF4487: Domain of un 41.3 4.7E+02 0.01 27.9 25.5 103 445-552 450-555 (559)
389 PF08568 Kinetochor_Ybp2: Unch 40.9 4.1E+02 0.009 29.0 12.6 73 10-85 435-512 (633)
390 COG5219 Uncharacterized conser 40.0 6E+02 0.013 28.8 16.9 107 184-292 48-157 (1525)
391 smart00582 RPR domain present 39.8 2E+02 0.0043 23.1 8.2 98 99-209 6-107 (121)
392 PF11919 DUF3437: Domain of un 39.4 61 0.0013 24.6 4.2 59 448-512 4-62 (90)
393 smart00582 RPR domain present 39.0 2E+02 0.0044 23.0 9.4 62 438-513 5-66 (121)
394 smart00755 Grip golgin-97, Ran 38.8 56 0.0012 21.1 3.3 34 90-124 3-36 (46)
395 PF14222 MOR2-PAG1_N: Cell mor 37.8 5.4E+02 0.012 27.6 23.3 154 94-256 130-308 (552)
396 COG5369 Uncharacterized conser 37.3 1.5E+02 0.0032 30.8 7.5 134 368-508 406-545 (743)
397 PF12726 SEN1_N: SEN1 N termin 35.9 6.6E+02 0.014 28.1 34.8 161 49-217 78-251 (727)
398 PF13925 Katanin_con80: con80 35.8 1.6E+02 0.0034 25.5 6.9 40 127-166 65-104 (164)
399 PF06685 DUF1186: Protein of u 35.1 3.8E+02 0.0083 25.1 13.8 44 223-266 113-161 (249)
400 KOG2213 Apoptosis inhibitor 5/ 34.7 4.8E+02 0.01 26.1 22.3 264 235-552 38-317 (460)
401 PF00613 PI3Ka: Phosphoinositi 33.2 1.9E+02 0.0042 25.5 7.1 115 8-143 4-123 (184)
402 COG5657 CSE1 CAS/CSE protein i 32.4 7.7E+02 0.017 27.8 33.6 92 476-573 530-627 (947)
403 cd07064 AlkD_like_1 A new stru 32.4 3.8E+02 0.0082 24.2 15.6 166 62-261 23-190 (208)
404 PF06371 Drf_GBD: Diaphanous G 32.3 2E+02 0.0043 25.2 7.3 56 144-208 129-186 (187)
405 COG1698 Uncharacterized protei 31.1 2.3E+02 0.005 21.3 7.1 67 8-75 9-81 (93)
406 PF01417 ENTH: ENTH domain; I 31.0 2.9E+02 0.0063 22.4 8.1 60 372-431 21-81 (125)
407 PF08324 PUL: PUL domain; Int 30.5 4.7E+02 0.01 24.6 10.7 99 406-507 124-230 (268)
408 COG5234 CIN1 Beta-tubulin fold 30.1 7.6E+02 0.016 27.0 22.5 143 6-162 376-525 (993)
409 PF06371 Drf_GBD: Diaphanous G 29.7 1.6E+02 0.0036 25.8 6.3 55 406-461 130-186 (187)
410 cd03562 CID CID (CTD-Interacti 29.6 2.2E+02 0.0047 22.6 6.3 71 388-461 36-107 (114)
411 PF08620 RPAP1_C: RPAP1-like, 28.6 1E+02 0.0022 22.3 3.7 31 133-163 41-71 (73)
412 KOG3036 Protein involved in ce 27.8 5E+02 0.011 24.2 14.9 139 15-161 26-198 (293)
413 KOG1222 Kinesin associated pro 27.8 6.9E+02 0.015 25.8 22.3 53 238-290 280-332 (791)
414 PF10193 Telomere_reg-2: Telom 27.1 1.5E+02 0.0033 23.7 4.9 75 476-552 4-82 (114)
415 KOG3678 SARM protein (with ste 25.8 6.5E+02 0.014 25.8 9.7 172 29-210 162-337 (832)
416 PF06628 Catalase-rel: Catalas 25.6 1.8E+02 0.004 20.6 4.6 39 81-119 15-54 (68)
417 PF14676 FANCI_S2: FANCI solen 25.3 4.4E+02 0.0095 22.6 12.2 121 112-246 37-157 (158)
418 KOG2085 Serine/threonine prote 25.0 7.3E+02 0.016 25.1 12.5 238 9-263 144-427 (457)
419 KOG4346 Uncharacterized conser 24.8 6.6E+02 0.014 27.3 9.9 113 473-598 506-622 (849)
420 KOG2669 Regulator of nuclear m 24.4 6.7E+02 0.015 24.5 9.7 84 433-530 7-90 (325)
421 KOG2141 Protein involved in hi 23.4 1E+03 0.022 26.2 14.9 54 541-594 461-518 (822)
422 PF14663 RasGEF_N_2: Rapamycin 23.3 1.6E+02 0.0034 23.7 4.4 32 431-462 6-37 (115)
423 PF11841 DUF3361: Domain of un 23.3 4.8E+02 0.01 22.4 12.3 97 111-214 32-136 (160)
424 PF14663 RasGEF_N_2: Rapamycin 23.2 1.9E+02 0.0042 23.1 4.9 34 476-509 5-38 (115)
425 PLN03205 ATR interacting prote 22.6 7.9E+02 0.017 24.6 11.5 139 111-250 302-446 (652)
426 smart00145 PI3Ka Phosphoinosit 22.3 5.5E+02 0.012 22.7 8.0 51 406-462 55-105 (184)
427 COG5234 CIN1 Beta-tubulin fold 21.8 4.7E+02 0.01 28.4 8.2 148 92-251 245-417 (993)
428 KOG2005 26S proteasome regulat 21.2 1.1E+03 0.023 25.7 17.2 64 390-462 641-704 (878)
429 KOG2753 Uncharacterized conser 21.2 7.8E+02 0.017 24.1 15.0 79 382-464 58-137 (378)
430 COG5221 DOP1 Dopey and related 21.0 1.3E+03 0.029 26.7 17.6 110 180-289 62-173 (1618)
431 COG5209 RCD1 Uncharacterized p 20.5 6.6E+02 0.014 23.0 8.2 58 192-249 158-217 (315)
432 PF08146 BP28CT: BP28CT (NUC21 20.4 5.4E+02 0.012 21.9 8.8 75 369-443 39-118 (153)
433 PF12031 DUF3518: Domain of un 20.2 5.8E+02 0.013 23.7 7.6 57 365-423 138-204 (257)
434 PF06685 DUF1186: Protein of u 20.0 7.3E+02 0.016 23.2 15.2 81 182-265 113-195 (249)
No 1
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-85 Score=629.81 Aligned_cols=604 Identities=57% Similarity=0.989 Sum_probs=571.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh
Q 006912 4 SVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (626)
Q Consensus 4 ~~~~~~~~~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~ 83 (626)
-|.|+|+++.+.|+.++|+...|||++ +|+.+...|.++...|+|.-||+.||...++.+..+|..|+.+|||.++.+|
T Consensus 2 ~~~w~p~e~~l~ql~~lLk~s~Spn~~-~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~ 80 (885)
T KOG2023|consen 2 AMTWQPDEQGLQQLAQLLKNSQSPNSE-TRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHY 80 (885)
T ss_pred CCCCcccHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccc
Confidence 489999999999999999999999999 9999999999999999999999999988778889999999999999999999
Q ss_pred ccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhch
Q 006912 84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (626)
Q Consensus 84 ~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~ 163 (626)
..++++...++|..++..+++.++.+|...+.++..|+...+...||+++|.|.+++.+++.+..++|+.+|.++++...
T Consensus 81 ~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa 160 (885)
T KOG2023|consen 81 NSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSA 160 (885)
T ss_pred cCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006912 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (626)
Q Consensus 164 ~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 243 (626)
..++.++. ++.++.++|.++++++++++++|..|+.|+..++-..+..+..++..+++.++.+.+|++++||+.+|+
T Consensus 161 ~~lds~~~---~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~ 237 (885)
T KOG2023|consen 161 QFLDSDVL---TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCR 237 (885)
T ss_pred HHHhhhcc---cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 88776543 467899999999999999999999999999999988888888899999999999999999999999999
Q ss_pred HHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhh
Q 006912 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (626)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~ 323 (626)
++..+.+..++.+.||++.+++++++..+|.+++|...|++||.++++.+.....+.||+.+++|.++..|.++++|+-+
T Consensus 238 alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~L 317 (885)
T KOG2023|consen 238 ALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIIL 317 (885)
T ss_pred HHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999887
Q ss_pred hh-hhccCCCCCCCCCCCcccccccCCCCCC-------CC--CCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHH
Q 006912 324 VE-AEEDESLPDRDQDLKPRFHSSRLHGSEN-------PE--DDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPV 393 (626)
Q Consensus 324 ~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~ 393 (626)
.+ .++|+.+||+++++||++++.+..|..+ +| +||||....|+.|+..+.+++.++..+|+++++.++|.
T Consensus 318 L~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~Pl 397 (885)
T KOG2023|consen 318 LKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPL 397 (885)
T ss_pred hcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence 76 6788899999999999999987665422 11 13445667899999999999999999999999999999
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCch
Q 006912 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (626)
Q Consensus 394 l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 473 (626)
+.+.+.+.+ |.+|++++.++|.++++|.+.+.++++.++|++++.+.|..|.||..+||++++++.|.... ..
T Consensus 398 Lk~~L~~~~---W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~----~~ 470 (885)
T KOG2023|consen 398 LKEHLSSEE---WKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD----SR 470 (885)
T ss_pred HHHHcCcch---hhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC----Ch
Confidence 999999988 99999999999999999999999999999999999999999999999999999999998764 46
Q ss_pred hhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Q 006912 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (626)
Q Consensus 474 ~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~ 553 (626)
..|+.+++..+++.+-|++..||++||+|++.+-+..++.+.||+..|+..|..++++++.+++...++|+++++.++|.
T Consensus 471 ~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~ 550 (885)
T KOG2023|consen 471 DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGH 550 (885)
T ss_pred HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhhhhhhHHHHHHHhcCCCCCCccchHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Q 006912 554 ELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQ 618 (626)
Q Consensus 554 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~~l~~~ 618 (626)
.+.+|.|.+.+||+|+++|..++++|++++.+++|++.++.++|.+|.||.++++..++.+++++
T Consensus 551 ~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t 615 (885)
T KOG2023|consen 551 ALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKT 615 (885)
T ss_pred hcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHH
Confidence 99888899999999999999999999999999999999999999999999999999999999954
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-61 Score=492.12 Aligned_cols=551 Identities=26% Similarity=0.384 Sum_probs=474.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHH
Q 006912 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI 94 (626)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i 94 (626)
..+.|++..+.|||++ +|++|++.|+.....+.....|.+++.. +.++++|++|++++|+.+.++|+.++.+.++.|
T Consensus 4 ~~l~qLl~~l~spDn~-vr~~Ae~~l~~~~~~~~~l~~L~~i~~~--~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNE-VRRQAEEALETLAKTEPLLPALAHILAT--SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred hHHHHHHHHhcCCCch-HHHHHHHHHHHhhcccchHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 5688999999999999 9999999999876655588889999876 899999999999999999999999999999999
Q ss_pred HHhHhhhhh-CCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCC
Q 006912 95 KSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (626)
Q Consensus 95 ~~~L~~~l~-~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~ 173 (626)
|..|+.++. ++.+.||+..|.+++.|++.+.+..||++++.+.++.+|+++..|+.|+.+|..+.+.++....
T Consensus 81 ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~------ 154 (1075)
T KOG2171|consen 81 KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ------ 154 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc------
Confidence 999999885 7789999999999999999987779999999999999999999999999999999998887654
Q ss_pred ccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccc--hHHHHhHHHHHHHHH----HhcCCCCHHHHHHHHHHHHH
Q 006912 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--SALFVSMDQYLQGLF----LLSNDPSAEVRKLVCAAFNL 247 (626)
Q Consensus 174 ~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~--~~~~~~~~~~l~~l~----~~~~~~~~~~~~~~~~~l~~ 247 (626)
.++..+.+.+.+++++++..||..|+++++.++...+ ....+.+..++|.++ ...++++.+....++++|..
T Consensus 155 --~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 155 --PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred --hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 4578999999999999887799999999999998875 444455555555444 45667788888999999999
Q ss_pred HHhhCccchhhhHHHHHHHHHhhccC--CChHHHHHHHhHHHHhhcc-CCcchhHHhhhhhhHHHHhhhcccCchhhhhh
Q 006912 248 LIEVRPSFLEPHLRNLFEYMLQVNKD--TDDDVALEACEFWHSYFEA-QLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (626)
Q Consensus 248 l~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~ 324 (626)
+++..|..+++++.+++.+++....+ -++.+|..|++++.++++. +...+...++...+++.++..|..-++|.+|.
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 99999999999999999999988655 4689999999999999887 33334455688899999999998877774443
Q ss_pred hhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-chHHhHHHHHHHhhcCCCC
Q 006912 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGD 403 (626)
Q Consensus 325 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~ 403 (626)
++|+ .|+|+.+ +....|.+++++++..+|+ .+++.+++.+..++++++
T Consensus 313 ~~d~-------------------------~ded~~~-----~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~- 361 (1075)
T KOG2171|consen 313 NEDD-------------------------LDEDDEE-----TPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTE- 361 (1075)
T ss_pred cccc-------------------------ccccccc-----CcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCC-
Confidence 3221 1111111 3467899999999999986 889999999999999999
Q ss_pred CChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHH
Q 006912 404 EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (626)
Q Consensus 404 ~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 483 (626)
|+.|+|++++++.+++||.+.+...++.+++.+++.++|+||+||++||.++|+++..+++. ..+.+.+.+.+.
T Consensus 362 --w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~----iqk~~~e~l~~a 435 (1075)
T KOG2171|consen 362 --WKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE----IQKKHHERLPPA 435 (1075)
T ss_pred --HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH----HHHHHHHhccHH
Confidence 99999999999999999999999999999999999999999999999999999999999875 345566666778
Q ss_pred HHHHhccC-CHHHHHHHHHHHHHHHHHh-cccccchHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhh
Q 006912 484 LLKRILDT-NKRVQEAACSAFATLEEEA-AEELAPRLEIILQ-HLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVY 560 (626)
Q Consensus 484 l~~~l~d~-~~~v~~~a~~al~~l~~~~-~~~~~~~l~~i~~-~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 560 (626)
++..+.++ +++|+.+|+.|+-++.+.| ++.+.||++.+++ .+..+.++....+++.++.+|++++.+.+..|. +|
T Consensus 436 L~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~--pY 513 (1075)
T KOG2171|consen 436 LIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFI--PY 513 (1075)
T ss_pred HHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhH--hH
Confidence 88888775 6899999999999999998 6788999999999 455555566678889999999999999999997 79
Q ss_pred hhhhhHHHHHHHhcCCCCCCc-c-chHHHHHHHHHHHhcc-ccccchHHHHHHHHHHH
Q 006912 561 LDILMPPLIAKWQQLPNSDKD-L-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINII 615 (626)
Q Consensus 561 ~~~l~~~l~~~~~~~~~~~~~-~-~~~l~~~~~l~~~~g~-~f~~~~~~i~~~l~~~l 615 (626)
++.+||.|.+.+++..+++.. + ...++|++.++.++|. .|.|+..+++..+...-
T Consensus 514 ~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~ 571 (1075)
T KOG2171|consen 514 FDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQ 571 (1075)
T ss_pred HHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhc
Confidence 999999998888865432322 2 4779999999999995 99999999999988773
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-50 Score=394.73 Aligned_cols=545 Identities=26% Similarity=0.430 Sum_probs=455.3
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHhc--CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH-----------HHh
Q 006912 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RTA 82 (626)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i-----------~~~ 82 (626)
++.++|..++|||.. .|++|+++|.++.. .|.|+..|..+|.. ...++..|..|++.|||.+ ..+
T Consensus 2 ~~~~~le~tlSpD~n-~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n-~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qR 79 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQN-VRKRAEKQLEQAQSQNFPQFLVLLSEVLAN-DNSSDVARMAAGLQLKNSLTAKDPERKQQYQQR 79 (859)
T ss_pred cHHHHHHHHcCCCcc-hHHHHHHHHHHHHhccHHHHHHHHHHHHhc-cCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHH
Confidence 567899999999999 99999999999864 68899999999974 4788999999999999988 347
Q ss_pred hccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhc-CcCchHHHHHHHHHHhccCChh-HHhHHHHHHHHHhh
Q 006912 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDIN-HMEGAMDALSKICE 160 (626)
Q Consensus 83 ~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~-~~~~~~~ll~~l~~~l~~~~~~-~r~~~l~~l~~l~~ 160 (626)
|-.++.+.|+++|..++..|+.+.+..++.++++++.|+..+ +.+.||++++.+.....+..+. ++++++.++|.+|+
T Consensus 80 Wl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice 159 (859)
T KOG1241|consen 80 WLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICE 159 (859)
T ss_pred HHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999887 6799999999999999876554 99999999999999
Q ss_pred hchhccccCCCCCccchhhhhHHHHHHhcCC--CChHHHHHHHHHHHHHHhccchHHHHhHH--HHHHHHHHhcCCCCHH
Q 006912 161 DIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDPSAE 236 (626)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~~ 236 (626)
....... ....+.++..+.++.+. ++..||.+|++||..-.++....+...++ -+|+.++...+.++.+
T Consensus 160 ~i~pevl-------~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~ 232 (859)
T KOG1241|consen 160 DIDPEVL-------EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEE 232 (859)
T ss_pred cCCHHHH-------HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHH
Confidence 8766522 24468889999998875 57799999999999888876544432222 3578888899999999
Q ss_pred HHHHHHHHHHHHHhhCccchhhhHHH-HHHHHHhhccCCChHHHHHHHhHHHHhhccCCc-----------------chh
Q 006912 237 VRKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP-----------------HEN 298 (626)
Q Consensus 237 ~~~~~~~~l~~l~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~-----------------~~~ 298 (626)
++..|+.||+++...+++++.+|+.+ ++...+..+.+++++|...+++||+++|+.+.. ...
T Consensus 233 i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~f 312 (859)
T KOG1241|consen 233 IQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYF 312 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHH
Confidence 99999999999999999999999986 999999999999999999999999999876321 122
Q ss_pred HHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHH
Q 006912 299 LKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (626)
Q Consensus 299 ~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l 378 (626)
.+..+..++|.++..|...+ +++| ++.|++.++|..||..+
T Consensus 313 a~~a~~~v~P~Ll~~L~kqd-----------------------------------e~~d----~DdWnp~kAAg~CL~l~ 353 (859)
T KOG1241|consen 313 ARQALQDVVPVLLELLTKQD-----------------------------------EDDD----DDDWNPAKAAGVCLMLF 353 (859)
T ss_pred HHHHHhHhhHHHHHHHHhCC-----------------------------------CCcc----cccCcHHHHHHHHHHHH
Confidence 23344567777777665322 1111 22399999999999999
Q ss_pred HhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccC-ccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHH
Q 006912 379 SNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (626)
Q Consensus 379 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~-~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l 457 (626)
++..|+++++.++|++.+.+++++ |+.|++|..++|++.++- .+.+.+.+.+.+|.++..+.|+...||.++.|++
T Consensus 354 A~~~~D~Iv~~Vl~Fiee~i~~pd---wr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtl 430 (859)
T KOG1241|consen 354 AQCVGDDIVPHVLPFIEENIQNPD---WRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTL 430 (859)
T ss_pred HHHhcccchhhhHHHHHHhcCCcc---hhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHH
Confidence 999999999999999999999999 999999999999999987 4566789999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcc---------cccchHHHHHHHHHHH
Q 006912 458 SRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE---------ELAPRLEIILQHLMMA 528 (626)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~---------~~~~~l~~i~~~l~~~ 528 (626)
|++++.+++. ..+..+...+++.++..++| .|+|...+|+++..+++.+.+ ...|+++.|+..|+..
T Consensus 431 grI~d~l~e~---~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~ 506 (859)
T KOG1241|consen 431 GRIADFLPEA---IINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKV 506 (859)
T ss_pred HHHHhhchhh---cccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhh
Confidence 9999999865 35778899999999999998 799999999999999987621 3457999999999988
Q ss_pred Hhhh--hHHH-HHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcC------CCCCCc----c-chHHHHHHHHHH
Q 006912 529 FGKY--QRRN-LRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL------PNSDKD----L-FPLLECFTSIAQ 594 (626)
Q Consensus 529 l~~~--~~~~-~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~~~~----~-~~~l~~~~~l~~ 594 (626)
.+.. +..+ +..++++|+.++........ +....+...+..++++. +..|+. + .-++.|++.+.+
T Consensus 507 tdr~dgnqsNLR~AAYeALmElIk~st~~vy--~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~r 584 (859)
T KOG1241|consen 507 TDRADGNQSNLRSAAYEALMELIKNSTDDVY--PMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIR 584 (859)
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCcHHHH--HHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 8764 3344 44899999999998876654 45555555555554431 212222 2 256788999999
Q ss_pred HhccccccchHHHHHHHHHHHHH
Q 006912 595 ALGAGFTQFAQPVFQRCINIIQT 617 (626)
Q Consensus 595 ~~g~~f~~~~~~i~~~l~~~l~~ 617 (626)
.+|.++.++.+++|..++++++.
T Consensus 585 k~~~~~~~~~d~iM~lflri~~s 607 (859)
T KOG1241|consen 585 KVGSDIREVSDQIMGLFLRIFES 607 (859)
T ss_pred HccccchhHHHHHHHHHHHHHcC
Confidence 99999999999999999999987
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.4e-42 Score=324.76 Aligned_cols=546 Identities=18% Similarity=0.306 Sum_probs=429.9
Q ss_pred HHHHHHHh-hcCCCCHHHHHHHHHHHHHHhc--CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH-----------HH
Q 006912 16 EICRLLEQ-QISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RT 81 (626)
Q Consensus 16 ~l~~~l~~-~~s~d~~~~r~~a~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i-----------~~ 81 (626)
++.++.++ ++|||+. +|..|+++|.+++. ...|+..+.+.|.+ ..+++++|..|++.|||.+ ..
T Consensus 5 ef~~l~~n~vLspD~n-~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d-~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~q 82 (858)
T COG5215 5 EFRCLGKNHVLSPDPN-ARLRAEAQLLELQSGDFEQFISLLVQVLCD-LNSNDQLRMVAGLILKNSLHANDPELQKGCSQ 82 (858)
T ss_pred HHHHHHhcccCCCCCC-ccccHHHHHHHhccccHHHHHHHHHHHHhc-cCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 34445544 4899999 99999999999876 45677888888874 4788999999999999988 34
Q ss_pred hhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhc-CcCchHHHHHHHHHHhccCCh-hHHhHHHHHHHHHh
Q 006912 82 AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKIC 159 (626)
Q Consensus 82 ~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~-~~~~~~~ll~~l~~~l~~~~~-~~r~~~l~~l~~l~ 159 (626)
.|..++++.|+++|...++.|.++.+..-+.++++++.|++.+ +.+.||+++..+.....+..| ..+..++.+++..|
T Consensus 83 rW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 83 RWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred hhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999987 678999999999999887655 57778899999998
Q ss_pred hhchh-ccccCCCCCccchhhhhHHHHHHhcCC--CChHHHHHHHHHHHHHHhccchHHH-H-hHHHHHHHHHHhcCCCC
Q 006912 160 EDIPQ-VLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPSALF-V-SMDQYLQGLFLLSNDPS 234 (626)
Q Consensus 160 ~~~~~-~~~~~~~~~~~~~~~~il~~l~~~l~~--~~~~vr~~al~~l~~~~~~~~~~~~-~-~~~~~l~~l~~~~~~~~ 234 (626)
+.... .+.. ..+.++-.+..+... ++..+|.+|++||..-+.+....+. + .-+-+++..+...+.++
T Consensus 163 es~~Pe~li~--------~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d 234 (858)
T COG5215 163 ESEAPEDLIQ--------MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND 234 (858)
T ss_pred hccCHHHHHH--------HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc
Confidence 87654 3221 124555555555433 5789999999999875444332221 1 11234788888889999
Q ss_pred HHHHHHHHHHHHHHHhhCccchhhhHHHH-HHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHH-------------
Q 006912 235 AEVRKLVCAAFNLLIEVRPSFLEPHLRNL-FEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK------------- 300 (626)
Q Consensus 235 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~l-~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~------------- 300 (626)
.++...++.||+++..-+++++.+|+++. ..+....+++++++|...+++||+++|+.+...+...
T Consensus 235 ~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~f 314 (858)
T COG5215 235 EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGF 314 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcch
Confidence 99999999999999999999999999854 4556677999999999999999999998743332222
Q ss_pred --hhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHH
Q 006912 301 --EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (626)
Q Consensus 301 --~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l 378 (626)
.....++|.++..+...++ |.+ .+.|++..+|..||..+
T Consensus 315 a~aav~dvlP~lL~LL~~q~e-----------------------------------d~~----~DdWn~smaA~sCLqlf 355 (858)
T COG5215 315 ARAAVADVLPELLSLLEKQGE-----------------------------------DYY----GDDWNPSMAASSCLQLF 355 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-----------------------------------Ccc----ccccchhhhHHHHHHHH
Confidence 2233467777666653221 111 23499999999999999
Q ss_pred HhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc-cchhhhHHHHHHHHhhhcCCCchHHHHHHHHHH
Q 006912 379 SNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (626)
Q Consensus 379 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l 457 (626)
++..|+.++..++.++.+.+++++ |..|+++..++|++.++-- ....+++++.+|.+.....|+.-.|+..++||+
T Consensus 356 aq~~gd~i~~pVl~FvEqni~~~~---w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~ 432 (858)
T COG5215 356 AQLKGDKIMRPVLGFVEQNIRSES---WANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCF 432 (858)
T ss_pred HHHhhhHhHHHHHHHHHHhccCch---hhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHH
Confidence 999999999999999999999999 9999999999999999864 455789999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCc-----------------------------------------------------------------
Q 006912 458 SRFSKFIVQDIGHQN----------------------------------------------------------------- 472 (626)
Q Consensus 458 ~~l~~~~~~~~~~~~----------------------------------------------------------------- 472 (626)
|+++.+.+..+.|..
T Consensus 433 g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~N 512 (858)
T COG5215 433 GAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALN 512 (858)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhcc
Confidence 999988775432110
Q ss_pred ------------------------------------------------------------------------------hh
Q 006912 473 ------------------------------------------------------------------------------GR 474 (626)
Q Consensus 473 ------------------------------------------------------------------------------~~ 474 (626)
.+
T Consensus 513 e~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie 592 (858)
T COG5215 513 ESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIE 592 (858)
T ss_pred chhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 11
Q ss_pred hhHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Q 006912 475 EQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (626)
Q Consensus 475 ~~~~~ll~~l~~~l~d~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~ 553 (626)
+.-+.++..++..++... ..+-.....+++.+...+++.+..|++.++|-+.+.++..+..+...++..++.++++++.
T Consensus 593 ~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~ 672 (858)
T COG5215 593 DVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGT 672 (858)
T ss_pred cHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhh
Confidence 222345555555555442 3344555666666666677778889999999999999666667777899999999999999
Q ss_pred ccCChhhhhhhhHHHHHHHhcCCCCCCccc-hHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Q 006912 554 ELNQPVYLDILMPPLIAKWQQLPNSDKDLF-PLLECFTSIAQALGAGFTQFAQPVFQRCINIIQ 616 (626)
Q Consensus 554 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~~l~ 616 (626)
+|. +|.+.+|..|++-+.... .++++. ..++|++.|+.++|..|.+|++.||-.+.+.-+
T Consensus 673 df~--~y~d~~ms~LvQ~lss~~-~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~ 733 (858)
T COG5215 673 DFN--IYADVLMSSLVQCLSSEA-THRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASE 733 (858)
T ss_pred hHH--HHHHHHHHHHHHHhcChh-hccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 996 699999999987776432 456664 778999999999999999999999988877643
No 5
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-38 Score=318.16 Aligned_cols=569 Identities=20% Similarity=0.304 Sum_probs=434.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhcc--------
Q 006912 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-------- 85 (626)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~-------- 85 (626)
.+.+.+++.++.+||++ .|++||++|+++++.|+|+..+++|+.++ +.+.++|+.|++.|||.|.+.|+.
T Consensus 3 ~~~l~~~~~~T~d~d~~-~R~~AE~~L~q~~K~pgFv~~lLqIi~~d-~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDSDAK-ERKAAEQQLNQLEKQPGFVSSLLQIIMDD-GVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred hHHHHHHHHHhcCCChH-HHHHHHHHHHHhhcCCcHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 46789999999999999 99999999999999999999999999864 777899999999999999999975
Q ss_pred -CChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchh
Q 006912 86 -MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (626)
Q Consensus 86 -l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~ 164 (626)
+.++.|+.+|+.+++.+...+..+|.....++..|.+.+.|..||++++.+...+++++.....+|+.|+..+++....
T Consensus 81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~ 160 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW 160 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 5789999999999999998899999999999999999999999999999999999999999999999999999998763
Q ss_pred ccccCCCCCccchhhhhHHHHH----HhcCCCC---hHHHHHHHHHHHHHHhc-cchHHH--HhHHHHHHHHHHhcCC--
Q 006912 165 VLDSDVPGLAECPINIFLPRLL----QFFQSPH---TSLRKLSLGSVNQFIML-MPSALF--VSMDQYLQGLFLLSND-- 232 (626)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~----~~l~~~~---~~vr~~al~~l~~~~~~-~~~~~~--~~~~~~l~~l~~~~~~-- 232 (626)
....+ +.-+...+..++|.+. +.+.+++ ..+.+..++.+.+++.+ +|..+. +.+..|+..+.+.++-
T Consensus 161 k~~ee-R~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpv 239 (1010)
T KOG1991|consen 161 KKDEE-RQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPV 239 (1010)
T ss_pred ccccc-cccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCC
Confidence 32211 1111223444445444 4455544 46778889999888854 676553 3455666666654431
Q ss_pred ---------------CCHHHHHHHHHHHHHHHhhCccc--------------hhhhHHHHHHHHHhhcc---C---CChH
Q 006912 233 ---------------PSAEVRKLVCAAFNLLIEVRPSF--------------LEPHLRNLFEYMLQVNK---D---TDDD 277 (626)
Q Consensus 233 ---------------~~~~~~~~~~~~l~~l~~~~~~~--------------~~~~l~~l~~~~~~~~~---~---~~~~ 277 (626)
+-+.++++|+..+..+.+.+++. +..+.+.+++..++.+. . ..++
T Consensus 240 P~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~r 319 (1010)
T KOG1991|consen 240 PVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDR 319 (1010)
T ss_pred ChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 11357899999999999876532 12233444444443321 1 3567
Q ss_pred HHHHHHhHHHHhhccCCcchhHHhhhhhhHHH-HhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCC
Q 006912 278 VALEACEFWHSYFEAQLPHENLKEFLPRLVPV-LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (626)
Q Consensus 278 v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~-l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (626)
|-..++.++....++...++.++||+..++.. +++.|+.+++|.+.|++||.| |+|..+...
T Consensus 320 vl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~E-------YiR~~~Di~---------- 382 (1010)
T KOG1991|consen 320 VLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYE-------YIRKKFDIF---------- 382 (1010)
T ss_pred HHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHH-------HHHhcCchh----------
Confidence 88889999998888877899999999999876 579999999999999988776 666443221
Q ss_pred CCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcC-----CCCCChhHHHHHHHHHHHHHccCccc--hhh
Q 006912 357 DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCIKG--LYP 429 (626)
Q Consensus 357 ~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~r~aal~~l~~l~~~~~~~--~~~ 429 (626)
.+..+.+.+|..++-.+++.-|++.++.+++++...++. +...+++.+++|++++|+++..+.+. +..
T Consensus 383 -----ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~ 457 (1010)
T KOG1991|consen 383 -----EDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS 457 (1010)
T ss_pred -----cccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH
Confidence 112356788899999999999999999999988888872 22355999999999999999766422 223
Q ss_pred hHHH-HHHHHhhhcCCCchHHHHHHHHHHHHHHH-HHhhhcCCCchhhhHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHH
Q 006912 430 HLSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSK-FIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATL 506 (626)
Q Consensus 430 ~l~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~~~~~ll~~l~~~l~-d~~~~v~~~a~~al~~l 506 (626)
.++. +++++.+.++++.-..|..|||+++++++ .++ ....+..++....++|. |++-.||..|+-||..+
T Consensus 458 ~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~-------d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~f 530 (1010)
T KOG1991|consen 458 QMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK-------DPNNLSEALELTHNCLLNDNELPVRVEAALALQSF 530 (1010)
T ss_pred HHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC-------ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHH
Confidence 3333 67899999999999999999999999994 443 46678889999999998 77789999999999999
Q ss_pred HHHhc---ccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcC-C---C--
Q 006912 507 EEEAA---EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL-P---N-- 577 (626)
Q Consensus 507 ~~~~~---~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~---~-- 577 (626)
++++. +.+.+|++++++.++.+.+..+.+.+.. ++..++...+.++. ||...++..|.+.+-+. . +
T Consensus 531 I~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~---vme~iV~~fseEls--PfA~eL~q~La~~F~k~l~~~~~~~ 605 (1010)
T KOG1991|consen 531 ISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN---VMEKIVCKFSEELS--PFAVELCQNLAETFLKVLQTSEDED 605 (1010)
T ss_pred HhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH---HHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHhccCCCC
Confidence 99885 4599999999999999998877766664 55567888888886 69888888888775432 1 1
Q ss_pred ---CCCcc--chHHHHHHHHHHHhcc--c-cccchHHHHHHHHHHHHHHH
Q 006912 578 ---SDKDL--FPLLECFTSIAQALGA--G-FTQFAQPVFQRCINIIQTQQ 619 (626)
Q Consensus 578 ---~~~~~--~~~l~~~~~l~~~~g~--~-f~~~~~~i~~~l~~~l~~~~ 619 (626)
+++.+ ..+++++..+...+.. + +...-+.++|.+..+|+++.
T Consensus 606 ~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i 655 (1010)
T KOG1991|consen 606 ESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDI 655 (1010)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11222 2455666666666544 2 22333445666666666653
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-33 Score=286.24 Aligned_cols=531 Identities=17% Similarity=0.187 Sum_probs=398.4
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh-c-----CCC----hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 006912 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYS-Q-----FPD----FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA 82 (626)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~-~-----~p~----~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~ 82 (626)
.+..|.+++.. ++|++ +|+-|.-.+.++. + +.+ .-..++.++.. +..+.+|+.-+..+-...++.
T Consensus 37 ~l~~L~~i~~~--~~~p~-~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~--E~~~~vr~k~~dviAeia~~~ 111 (1075)
T KOG2171|consen 37 LLPALAHILAT--SADPQ-VRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQS--ETEPSVRHKLADVIAEIARND 111 (1075)
T ss_pred hHHHHHHHHhc--CCChH-HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhc
Confidence 33344444443 46667 9999888877742 1 122 23345555555 888999998877766554442
Q ss_pred hccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc---CchHHHHHHHHHHhccCChhHHhHHHHHHHHHh
Q 006912 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI---AGWLELLQALVTCLDSNDINHMEGAMDALSKIC 159 (626)
Q Consensus 83 ~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~---~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~ 159 (626)
+++ .+.++.+.|+++..++++..|..+-.++..+....+. ++..++.+.+.+++++++..+|..++++++.++
T Consensus 112 ---l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~ 187 (1075)
T KOG2171|consen 112 ---LPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFA 187 (1075)
T ss_pred ---ccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 333 7788999999999999999999999999998876543 456799999999999987779999999999999
Q ss_pred hhchhccccCCCCCccchhhhhHHHHHHhc----CCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCC--
Q 006912 160 EDIPQVLDSDVPGLAECPINIFLPRLLQFF----QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP-- 233 (626)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~l----~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-- 233 (626)
...+.... . -.....++|.++..+ .+.+.+....++++|..+++..|+.+.+++.++++......++.
T Consensus 188 ~~~~~~~~-~-----~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l 261 (1075)
T KOG2171|consen 188 EYLENNKS-E-----VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKEL 261 (1075)
T ss_pred HHhccchH-H-----HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccc
Confidence 88852111 0 023455666665554 45677788999999999999999999999999999888877654
Q ss_pred CHHHHHHHHHHHHHHHhhCccch---hhhHHHHHHHHHhhccCCC----------------hHHHHHHHhHHHHhhccCC
Q 006912 234 SAEVRKLVCAAFNLLIEVRPSFL---EPHLRNLFEYMLQVNKDTD----------------DDVALEACEFWHSYFEAQL 294 (626)
Q Consensus 234 ~~~~~~~~~~~l~~l~~~~~~~~---~~~l~~l~~~~~~~~~~~~----------------~~v~~~a~~~l~~l~~~~~ 294 (626)
++.+|..|++++..+++..|... .++.+.+++.++..+.+.+ +.....|.+.+-.++.+-.
T Consensus 262 ~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~ 341 (1075)
T KOG2171|consen 262 ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG 341 (1075)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC
Confidence 57899999999999998855433 3466778887777653211 1124445555555544411
Q ss_pred cchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHH
Q 006912 295 PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAA 374 (626)
Q Consensus 295 ~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~ 374 (626)
....+.+ +++.+-..+ .+.+|..|+++..+
T Consensus 342 g~~v~p~----~~~~l~~~l----------------------------------------------~S~~w~~R~AaL~A 371 (1075)
T KOG2171|consen 342 GKQVLPP----LFEALEAML----------------------------------------------QSTEWKERHAALLA 371 (1075)
T ss_pred hhhehHH----HHHHHHHHh----------------------------------------------cCCCHHHHHHHHHH
Confidence 1111211 111111111 13348899999999
Q ss_pred HHHHHhhcCc---chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHH-HHHHHhhhcCC-CchHH
Q 006912 375 LDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE-IVAFLIPLLDD-KFPLI 449 (626)
Q Consensus 375 l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~-l~~~l~~~l~d-~~~~v 449 (626)
++.++..+++ ..++.+++.+...+++++ +++|.||+.++|+++..+...+..+..+ +.|.++..+.+ .+++|
T Consensus 372 ls~i~EGc~~~m~~~l~~Il~~Vl~~l~Dph---prVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV 448 (1075)
T KOG2171|consen 372 LSVIAEGCSDVMIGNLPKILPIVLNGLNDPH---PRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRV 448 (1075)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHH
Confidence 9999999987 457889999999999999 9999999999999999987777655544 55577888776 47899
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Q 006912 450 RSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI-LDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMA 528 (626)
Q Consensus 450 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l-~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~ 528 (626)
...|+.++-.+.+.+... ...+|++.++...+..+ +++.+.||+.+.+||+.++..+++.|.||++.+|+.|...
T Consensus 449 ~ahAa~al~nf~E~~~~~----~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~ 524 (1075)
T KOG2171|consen 449 QAHAAAALVNFSEECDKS----ILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNF 524 (1075)
T ss_pred HHHHHHHHHHHHHhCcHH----HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Confidence 999999999998888765 68999999999555554 5667999999999999999999999999999999999999
Q ss_pred HhhhhHHH---HH-HHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCC-CCCCccchHHHHHHHHHHHhccccccc
Q 006912 529 FGKYQRRN---LR-IVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLP-NSDKDLFPLLECFTSIAQALGAGFTQF 603 (626)
Q Consensus 529 l~~~~~~~---~~-~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~l~~~~~l~~~~g~~f~~~ 603 (626)
+++.+++. ++ .+++|++.+..++|++-+. ++...++..+........ ++++...+.+..++.+++.+|++|.||
T Consensus 525 L~n~~~~d~r~LrgktmEcisli~~AVGke~F~-~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~ 603 (1075)
T KOG2171|consen 525 LQNADDKDLRELRGKTMECLSLIARAVGKEKFL-PLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPF 603 (1075)
T ss_pred HhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhh-HhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhH
Confidence 99876432 33 7899999999999976554 488888887776543222 234445688899999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 006912 604 AQPVFQRCINIIQ 616 (626)
Q Consensus 604 ~~~i~~~l~~~l~ 616 (626)
++.+||.+++-.+
T Consensus 604 L~~Vmppl~~ta~ 616 (1075)
T KOG2171|consen 604 LPVVMPPLLKTAR 616 (1075)
T ss_pred HHHHhHHHHHhhc
Confidence 9999999988654
No 7
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-32 Score=272.07 Aligned_cols=569 Identities=18% Similarity=0.252 Sum_probs=409.0
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhcc-------
Q 006912 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS------- 85 (626)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~------- 85 (626)
+++.+.+.|.++++||++ +|+.||+.|.+...+++|...+++++.. ...++.+|..|++.+||.++++|..
T Consensus 3 ~le~l~~~l~qTl~pdps-~rk~aEr~L~~~e~q~~y~l~lL~Lv~~-~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~ 80 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPS-VRKPAERALRSLEGQQNYPLLLLNLVAN-GQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIK 80 (960)
T ss_pred cHHHHHHHHHhcCCCCCc-cCchHHHHHHHhccCCCchHHHHHHHhc-cCcChhHHHHHHHHHHHHHHhccCcCCCCccc
Confidence 467788999999999999 9999999999999999999889998875 3669999999999999999999963
Q ss_pred CChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhc
Q 006912 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (626)
Q Consensus 86 l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~ 165 (626)
+.++.++.||..++..+-+....+...++.+++.|++.|+|+.||.++|.+.+.++++|..+..+.+..-..+++.+...
T Consensus 81 i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~e 160 (960)
T KOG1992|consen 81 IIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPE 160 (960)
T ss_pred cchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcc
Confidence 77889999999999999999999999999999999999999999999999999999999888888888888888887765
Q ss_pred cccCCCCCc---cchhhhhHHHHHHh-------cC--CCCh-------HHHHHHHHHHHHHH-hccchHHHHhHHHHHHH
Q 006912 166 LDSDVPGLA---ECPINIFLPRLLQF-------FQ--SPHT-------SLRKLSLGSVNQFI-MLMPSALFVSMDQYLQG 225 (626)
Q Consensus 166 ~~~~~~~~~---~~~~~~il~~l~~~-------l~--~~~~-------~vr~~al~~l~~~~-~~~~~~~~~~~~~~l~~ 225 (626)
.+++ +++ ...+..+-..+... .+ +++. ++....++.++++. +.+|+.+.+++..||+.
T Consensus 161 frSd--aL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~ 238 (960)
T KOG1992|consen 161 FRSD--ALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGA 238 (960)
T ss_pred cccH--HHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHH
Confidence 5432 221 01112111122222 21 1222 23344556666665 56799999999999999
Q ss_pred HHHhcCCC-------C------HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccC-----CChHHHHHHHhHHH
Q 006912 226 LFLLSNDP-------S------AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-----TDDDVALEACEFWH 287 (626)
Q Consensus 226 l~~~~~~~-------~------~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~v~~~a~~~l~ 287 (626)
+.+.+.-. + .++|...|+.++..+.++++.+.+++++++...+..+.+ ..+.....|++||.
T Consensus 239 F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt 318 (960)
T KOG1992|consen 239 FHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLT 318 (960)
T ss_pred HHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 99865411 1 257889999999999999999999999999877766432 34667889999999
Q ss_pred HhhccCCcchh--HHhhhhhhHHH-HhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCcccccc
Q 006912 288 SYFEAQLPHEN--LKEFLPRLVPV-LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364 (626)
Q Consensus 288 ~l~~~~~~~~~--~~~~l~~li~~-l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (626)
.+++.+...+. ....+.++... +++.+...++|+|.+++++.| |+|.-+ .|+| -|
T Consensus 319 ~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~ple-------YiRRDl-----EGsD------vd---- 376 (960)
T KOG1992|consen 319 SVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLE-------YIRRDL-----EGSD------VD---- 376 (960)
T ss_pred HHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHH-------HHHHhc-----ccCC------cc----
Confidence 99886332221 12344555543 467788888888888776654 444221 1221 11
Q ss_pred ccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhc----CCCCCChhHHHHHHHHHHHHHccCc---cc------h---h
Q 006912 365 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS----ASGDEAWKDREAAVLALGAIAEGCI---KG------L---Y 428 (626)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~----~~~~~~~~~r~aal~~l~~l~~~~~---~~------~---~ 428 (626)
+.|++|.+.+..+++.+...+.+.+...+...++ +| +.+|+.++.++..+.+++.... .. + .
T Consensus 377 -TRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nP-S~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~ 454 (960)
T KOG1992|consen 377 -TRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNP-SGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVV 454 (960)
T ss_pred -hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCC-CccccccchhhhhhHHHHhhcchhhcceeeccccccHH
Confidence 6799999999999999977666666666666665 33 4559999999999999876531 11 1 1
Q ss_pred hh-HHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 006912 429 PH-LSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (626)
Q Consensus 429 ~~-l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (626)
.+ ...++|.+...=..++|.++..++.-+-.+-.. -.+.++-.++|.++..++.++..|...|+.++.++.
T Consensus 455 ~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~q--------l~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil 526 (960)
T KOG1992|consen 455 DFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQ--------LGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLL 526 (960)
T ss_pred HHHHHHhhHHhccCccccccchhhcccceeeeeccc--------CChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhcc
Confidence 22 233555555544467899999886644333332 346778889999999999989999999999999998
Q ss_pred HHhc---------ccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCC
Q 006912 508 EEAA---------EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNS 578 (626)
Q Consensus 508 ~~~~---------~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 578 (626)
..+. +.+.||...++..+.+.+..+....-+..+.|+-.++........ ++.+.++..+-+.......+
T Consensus 527 ~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~--p~~~~~l~~Lteiv~~v~KN 604 (960)
T KOG1992|consen 527 TVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAII--PHAPELLRQLTEIVEEVSKN 604 (960)
T ss_pred ccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhh--hhhhHHHHHHHHHHHHHhcC
Confidence 5432 467889999999998888776543334555555555555544432 46666666655554433222
Q ss_pred C--Ccc-chHHHHHHHHHHHhcc-c---cccchHHHHHHHHHHHHHHH
Q 006912 579 D--KDL-FPLLECFTSIAQALGA-G---FTQFAQPVFQRCINIIQTQQ 619 (626)
Q Consensus 579 ~--~~~-~~~l~~~~~l~~~~g~-~---f~~~~~~i~~~l~~~l~~~~ 619 (626)
. +.- -+++++++.+.+..+. + ...+-..++|.+..+|.+..
T Consensus 605 Ps~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI 652 (960)
T KOG1992|consen 605 PSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDI 652 (960)
T ss_pred CCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222 2778888888877665 2 34466666766666666654
No 8
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.8e-28 Score=236.09 Aligned_cols=546 Identities=13% Similarity=0.173 Sum_probs=383.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccC--------
Q 006912 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM-------- 86 (626)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l-------- 86 (626)
++++|++.+++++|.. .|+.|+..|.++.++|+|+..+.+++.++ +-++++|+.|++++||.|.+.|+.+
T Consensus 3 ~ellqcf~qTldada~-~rt~AE~~Lk~leKqPgFv~all~i~s~d-e~~lnvklsAaIYfKNkI~rsWss~~d~~i~~D 80 (970)
T COG5656 3 EELLQCFLQTLDADAG-KRTIAEAMLKDLEKQPGFVMALLHICSKD-EGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKAD 80 (970)
T ss_pred HHHHHHHHHHhccCcc-hhhHHHHHHHHhhcCCcHHHHHHHHHhhc-cCCchhhHHHHHHHhhhhhhhhhhcccCCCCCc
Confidence 5789999999999999 99999999999999999999999999864 6789999999999999999999872
Q ss_pred -ChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc-CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchh
Q 006912 87 -SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (626)
Q Consensus 87 -~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~-~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~ 164 (626)
.++.|+.+++.++..+...+...|.....++..|...+++ +.|+ ++|....++.+++..+...|+.|+..+++...-
T Consensus 81 ek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayRw 159 (970)
T COG5656 81 EKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYRW 159 (970)
T ss_pred ccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHhh
Confidence 3456666666666666667777788887788888888755 8899 999999999999999999999999999998765
Q ss_pred ccccCCCCCccchhhhhHHHHHHhc---CC-C---ChHHHHHHHHHHHHHHh-ccchHHH--HhHHHHHHHHHHhcCC--
Q 006912 165 VLDSDVPGLAECPINIFLPRLLQFF---QS-P---HTSLRKLSLGSVNQFIM-LMPSALF--VSMDQYLQGLFLLSND-- 232 (626)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l---~~-~---~~~vr~~al~~l~~~~~-~~~~~~~--~~~~~~l~~l~~~~~~-- 232 (626)
....+ +.........++|.+.+.- .+ + ..++....++.+...+- .+|..+. +.+..|++.....++.
T Consensus 160 k~nde-q~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qkpl 238 (970)
T COG5656 160 KYNDE-QVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPL 238 (970)
T ss_pred hccch-HhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcCCC
Confidence 43321 1111233445555554432 22 2 34566677777777663 3565542 2333444444443321
Q ss_pred ---------------CCHHHHHHHHHHHHHHHhhCccchh------------hhHHHHHHHHHhh----ccCC--ChHHH
Q 006912 233 ---------------PSAEVRKLVCAAFNLLIEVRPSFLE------------PHLRNLFEYMLQV----NKDT--DDDVA 279 (626)
Q Consensus 233 ---------------~~~~~~~~~~~~l~~l~~~~~~~~~------------~~l~~l~~~~~~~----~~~~--~~~v~ 279 (626)
+-..++++|+..|..+...+.+... ..++.++....+. .+.+ -.+..
T Consensus 239 p~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWlsd~~ 318 (970)
T COG5656 239 PNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLSDIE 318 (970)
T ss_pred CHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecchHH
Confidence 1124578888888888876654221 1222222222221 1222 12234
Q ss_pred HHHHhHHHHhhcc-CCcchhHHhhhhhhHHH-HhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCC
Q 006912 280 LEACEFWHSYFEA-QLPHENLKEFLPRLVPV-LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (626)
Q Consensus 280 ~~a~~~l~~l~~~-~~~~~~~~~~l~~li~~-l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (626)
...+.+....|.. ...+..+.||+.-++.. +++.++.+++++|.|+.|++| |+|.++....
T Consensus 319 LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~e-------yirry~df~d---------- 381 (970)
T COG5656 319 LYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDE-------YIRRYYDFFD---------- 381 (970)
T ss_pred HHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHH-------HHHHhcchhc----------
Confidence 4555555554444 45788999999999886 579999999999999988876 5554443321
Q ss_pred CccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcC-----CCCCChhHHHHHHHHHHHHHccC--ccchhhh
Q 006912 358 DDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGC--IKGLYPH 430 (626)
Q Consensus 358 ~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~r~aal~~l~~l~~~~--~~~~~~~ 430 (626)
...+..-+|..++-.....-+++.+..+++++...++. ++-++.+..++|++.++++..-. ...+...
T Consensus 382 -----~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~ 456 (970)
T COG5656 382 -----NGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANV 456 (970)
T ss_pred -----CCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHH
Confidence 01123344555665555566677788888888887743 22356889999999999987722 1222233
Q ss_pred HHH-HHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 006912 431 LSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (626)
Q Consensus 431 l~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (626)
++. +++++.+.++++.-.+|..||..++++.+.++. ......++....+++++++-.|+..|+.|+..++.+
T Consensus 457 me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd-------~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~ 529 (970)
T COG5656 457 MEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKD-------NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFN 529 (970)
T ss_pred HHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhc
Confidence 332 788999999999999999999999999877763 466788899999999998889999999999999866
Q ss_pred h--cccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcC-------C-C--
Q 006912 510 A--AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL-------P-N-- 577 (626)
Q Consensus 510 ~--~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~-------~-~-- 577 (626)
- .+.+..|.+..|+.|+.+-+..+..... .++..+++....++. ||..+++..+++++-++ + +
T Consensus 530 ~q~h~k~sahVp~tmekLLsLSn~feiD~LS---~vMe~fVe~fseELs--pfa~eLa~~Lv~qFlkiaq~l~ens~d~~ 604 (970)
T COG5656 530 EQSHEKFSAHVPETMEKLLSLSNTFEIDPLS---MVMESFVEYFSEELS--PFAPELAGSLVRQFLKIAQSLLENSSDTS 604 (970)
T ss_pred hhhhHHHHhhhhHHHHHHHHhcccccchHHH---HHHHHHHHHhHHhhc--hhHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 4 4678889999999998887776665555 455557777777775 69999998888854331 1 1
Q ss_pred ---CCCcc--chHHHHHHHHHHHhcc
Q 006912 578 ---SDKDL--FPLLECFTSIAQALGA 598 (626)
Q Consensus 578 ---~~~~~--~~~l~~~~~l~~~~g~ 598 (626)
+|+++ ...++++..+.-.+..
T Consensus 605 s~vDDKqmaasGiL~T~~smiLSlen 630 (970)
T COG5656 605 SVVDDKQMAASGILRTIESMILSLEN 630 (970)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhccc
Confidence 22333 3556777666666543
No 9
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.97 E-value=1.3e-26 Score=232.37 Aligned_cols=557 Identities=20% Similarity=0.265 Sum_probs=390.8
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhcc--------
Q 006912 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-------- 85 (626)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~-------- 85 (626)
-+.+..+|.+++|||+. +|.+|+..|.++...++|-..|.++..+ +...-+.|+.|.+.|++.+.++|..
T Consensus 3 ~~~ii~~L~~~ls~d~~-vr~~AE~~l~qle~~~~f~~aL~~va~~-~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~ 80 (1005)
T KOG2274|consen 3 KQAIIELLSGSLSADQN-VRSQAETQLKQLELTEGFGVALAEVAAN-KDASLPLRQIALVLLKRYIEKHWSPNFEAFRYP 80 (1005)
T ss_pred HHHHHHHHHhhcCCChh-HHHHHHHHHhccccchHHHHHHHHHHhC-cccCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence 35789999999999999 9999999999999989998999998874 4678899999999999999999975
Q ss_pred --CChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhch
Q 006912 86 --MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (626)
Q Consensus 86 --l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~ 163 (626)
.+.+.+..||+.|+..+-+++..+|+.++.++..|+..++|+.||+++|.+.+++.+.+.+..++++.+|..+....-
T Consensus 81 ~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~ 160 (1005)
T KOG2274|consen 81 LIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD 160 (1005)
T ss_pred CcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 345778899999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred hccccCCCCCccchhhhhHHHHHHhc---CCCChHHHHHHH--HHHHHHHhccc-------hHHHHhH----HHHHHHHH
Q 006912 164 QVLDSDVPGLAECPINIFLPRLLQFF---QSPHTSLRKLSL--GSVNQFIMLMP-------SALFVSM----DQYLQGLF 227 (626)
Q Consensus 164 ~~~~~~~~~~~~~~~~~il~~l~~~l---~~~~~~vr~~al--~~l~~~~~~~~-------~~~~~~~----~~~l~~l~ 227 (626)
....... ..-.++.....+ ...+...|..+. +.+.++...+. ......+ .+++..+-
T Consensus 161 ~ee~~~~-------~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~ 233 (1005)
T KOG2274|consen 161 VEEMFFV-------GPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILE 233 (1005)
T ss_pred HHHHhcc-------cccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3322111 122333333332 233333333333 44444332221 1112222 33333333
Q ss_pred HhcC--C-CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhc----------------------cCCCh------
Q 006912 228 LLSN--D-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN----------------------KDTDD------ 276 (626)
Q Consensus 228 ~~~~--~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~----------------------~~~~~------ 276 (626)
..++ + .+...|.....++..+.++.|....+++..+++..++.. .+.++
T Consensus 234 h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~ 313 (1005)
T KOG2274|consen 234 HPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVE 313 (1005)
T ss_pred hhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChH
Confidence 3222 2 345688899999999999999888877766665443221 11111
Q ss_pred HHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCC
Q 006912 277 DVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (626)
Q Consensus 277 ~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (626)
......++|+..+++.....+.++..+..+++.++.+++.+++.++-|..|+.+.+ +
T Consensus 314 ~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV-----------------------~ 370 (1005)
T KOG2274|consen 314 TLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFV-----------------------A 370 (1005)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhh-----------------------c
Confidence 23456667788877763344445556777888888888999999998976654311 0
Q ss_pred CCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCC-------CCCChhHHHHHHHHHHHHHccCccchhh
Q 006912 357 DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSAS-------GDEAWKDREAAVLALGAIAEGCIKGLYP 429 (626)
Q Consensus 357 ~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~-------~~~~~~~r~aal~~l~~l~~~~~~~~~~ 429 (626)
++++ .++.|..+...+-.+...+|...+..+.....+.+... +..+|...++.+.+......+. ....
T Consensus 371 dEd~---~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~--~~dd 445 (1005)
T KOG2274|consen 371 DEDD---GYTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDD--ANDD 445 (1005)
T ss_pred cCCC---CchhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCc--chHH
Confidence 1111 14678888888888888888765555555543333321 1234888888888777666332 1234
Q ss_pred hHHHHHHHHhhhcC-CCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHH
Q 006912 430 HLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLE 507 (626)
Q Consensus 430 ~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~-d~~~~v~~~a~~al~~l~ 507 (626)
.+..+...+...+. +..|..-..++++++.+++... .....+..++...+..+. |..+.++..|+.++..++
T Consensus 446 ~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~------~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~ 519 (1005)
T KOG2274|consen 446 KLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTV------INPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC 519 (1005)
T ss_pred HHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc
Confidence 44445555555554 4567777799999999888754 346677777777777766 556788888888887776
Q ss_pred HHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCCCCcc-chHH
Q 006912 508 EEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLL 586 (626)
Q Consensus 508 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~l 586 (626)
-.+.+.+++|.++..|..+..+.++++...++++|+.++.- .+++. ...-..+.|.....+.+.++ |+.. ..+.
T Consensus 520 --~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~-as~~skI~P~~i~lF~k~s~-DP~V~~~~q 594 (1005)
T KOG2274|consen 520 --KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFA-ASMESKICPLTINLFLKYSE-DPQVASLAQ 594 (1005)
T ss_pred --CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-Chhhh-hhhhcchhHHHHHHHHHhcC-CchHHHHHH
Confidence 23567899999999999999999999999999999998754 33432 12445677777777777764 5543 3455
Q ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Q 006912 587 ECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQ 619 (626)
Q Consensus 587 ~~~~~l~~~~g~~f~~~~~~i~~~l~~~l~~~~ 619 (626)
+|+..+... .....|+....+|.++++|..+.
T Consensus 595 d~f~el~q~-~~~~g~m~e~~iPslisil~~~~ 626 (1005)
T KOG2274|consen 595 DLFEELLQI-AANYGPMQERLIPSLISVLQLNA 626 (1005)
T ss_pred HHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcc
Confidence 666666652 24568899999999999987664
No 10
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-26 Score=228.19 Aligned_cols=559 Identities=16% Similarity=0.207 Sum_probs=370.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhcc-----CChhHH
Q 006912 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-----MSPSNQ 91 (626)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~-----l~~~~~ 91 (626)
++|.|++..|||.. ++|.||++|.+.+++|+|...|..|+.+ ++.+-.+|.+|++.+||.|.++|++ +++++|
T Consensus 2 vvq~Lq~Ats~d~~-v~k~AE~qLr~WEtqPGF~~~L~sI~l~-~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK 79 (978)
T KOG1993|consen 2 VVQVLQQATSQDHI-VVKPAEAQLRQWETQPGFFSKLYSIFLS-KTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEK 79 (978)
T ss_pred HHHHHHHhcCCCcc-cchhHHHHHHhhccCCcHHHHHHHHHhc-cccceeeeeehhhhHhcchhHHhhcCCcccCCHHHH
Confidence 57899999999999 9999999999999999999999998874 4778899999999999999999985 899999
Q ss_pred HHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccC----ChhHHhHHHHHHHHHhhhchhccc
Q 006912 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN----DINHMEGAMDALSKICEDIPQVLD 167 (626)
Q Consensus 92 ~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~----~~~~r~~~l~~l~~l~~~~~~~~~ 167 (626)
..||..++..+.++...+..+.|.+++.|++.+.|-.||+++|.+.+.+++. |....+..+..+..+.+..+..-.
T Consensus 80 ~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL 159 (978)
T KOG1993|consen 80 DFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRL 159 (978)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999988875 777788889999998888765311
Q ss_pred cCCCCCccchhhhhHHHHHHhcCCC------------Ch-------HHHHHHHHHHHHHHhc---cch--HHHHhHHHHH
Q 006912 168 SDVPGLAECPINIFLPRLLQFFQSP------------HT-------SLRKLSLGSVNQFIML---MPS--ALFVSMDQYL 223 (626)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~------------~~-------~vr~~al~~l~~~~~~---~~~--~~~~~~~~~l 223 (626)
..-+.+|......+++.+...+-++ +. ..-.-+++++..++-+ .|. ++.+.+.+++
T Consensus 160 ~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~eRl~~F~ 239 (978)
T KOG1993|consen 160 LADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFFERLLQFL 239 (978)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHH
Confidence 1111222223344444332222111 11 1223344555544422 121 2444444444
Q ss_pred HH----HHHhcCCC----CHHHHHHH----HHHHHHHHhhCccchhh--hHHHHHHHHHhhccCC-------------Ch
Q 006912 224 QG----LFLLSNDP----SAEVRKLV----CAAFNLLIEVRPSFLEP--HLRNLFEYMLQVNKDT-------------DD 276 (626)
Q Consensus 224 ~~----l~~~~~~~----~~~~~~~~----~~~l~~l~~~~~~~~~~--~l~~l~~~~~~~~~~~-------------~~ 276 (626)
.. +...++.. ..++.... ..++..+.+.+|--|.. ..+..+++.+....++ -+
T Consensus 240 e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~~~~~~fe 319 (978)
T KOG1993|consen 240 ELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQISGHLSSFE 319 (978)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccccccccHH
Confidence 33 22222211 11222223 33445555666644443 2333344333332221 12
Q ss_pred HHHHHHHhHHHHhh--ccC-------------C-cch---hH------HhhhhhhHHHHh-hhcccCchhhhhhhhhccC
Q 006912 277 DVALEACEFWHSYF--EAQ-------------L-PHE---NL------KEFLPRLVPVLL-SNMIYADDDESLVEAEEDE 330 (626)
Q Consensus 277 ~v~~~a~~~l~~l~--~~~-------------~-~~~---~~------~~~l~~li~~l~-~~l~~~~~d~~~~~~~~~e 330 (626)
+....++..+-.+. .+. . ..+ .+ .+-+..+...++ +++..+++|.|.|..||++
T Consensus 320 ~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEeW~~dPE~ 399 (978)
T KOG1993|consen 320 EFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEEWTQDPEG 399 (978)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHHHhcChHH
Confidence 23333333333221 110 0 000 00 011223444444 4566788888888766553
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCC------CC
Q 006912 331 SLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASG------DE 404 (626)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~------~~ 404 (626)
++ .++...+..+++|-.|......+...+++-++|.++..+.+..+... ..
T Consensus 400 -------~~----------------~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~ 456 (978)
T KOG1993|consen 400 -------WV----------------LEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLT 456 (978)
T ss_pred -------hh----------------hhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHH
Confidence 11 01111223457899999999988888888777777777765554431 11
Q ss_pred ChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCC---CchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHH
Q 006912 405 AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD---KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481 (626)
Q Consensus 405 ~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll 481 (626)
..-.+.|+..++|.-+....+. -++-..+-..+++.+.. ....+|+..+|.+|++.+.- ...+..+.+.
T Consensus 457 a~L~KDAiYaa~g~~a~~l~~~-~dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq-------~~~e~k~l~Y 528 (978)
T KOG1993|consen 457 ALLLKDAIYAAFGLAAYELSNI-LDFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQ-------QKLELKPLLY 528 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhhee-------chHhHHHHHH
Confidence 1345677777777776655432 23333344444444442 34567899999999998732 2355667788
Q ss_pred HHHHHHhccC-CHHHHHHHHHHHHHHHHHh---cccccchHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhccccC
Q 006912 482 MGLLKRILDT-NKRVQEAACSAFATLEEEA---AEELAPRLEIILQHLMMAFGKYQRR-NLRIVYDAIGTLADAVGFELN 556 (626)
Q Consensus 482 ~~l~~~l~d~-~~~v~~~a~~al~~l~~~~---~~~~~~~l~~i~~~l~~~l~~~~~~-~~~~~~~~l~~i~~~~~~~~~ 556 (626)
..+++.++|. +..|+.+++.++..+++.. .+.+.||++.+...+.++++....- .+..++..++.++..++....
T Consensus 529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~ 608 (978)
T KOG1993|consen 529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA 608 (978)
T ss_pred HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 8888989987 6789999999999999876 5789999999999999999887664 455899999999999998876
Q ss_pred ChhhhhhhhHHHHHHHhcCCCCCCcc-chHHHHHHHHHHHhccccccchHHHHHHH
Q 006912 557 QPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRC 611 (626)
Q Consensus 557 ~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~l~~~~~l~~~~g~~f~~~~~~i~~~l 611 (626)
||...++..+-..|+... +..-+ .+.+.++..++.++|..-.++.+-++|.+
T Consensus 609 --P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVI 661 (978)
T KOG1993|consen 609 --PYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVI 661 (978)
T ss_pred --HHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 699999998888898653 22222 47789999999999985555555555544
No 11
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8e-27 Score=226.00 Aligned_cols=553 Identities=16% Similarity=0.165 Sum_probs=382.5
Q ss_pred cCCCCHHHHHHHHHHHHH-Hhc-----CCChHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHh
Q 006912 25 ISPSSTADKSQIWQQLQQ-YSQ-----FPDFNNYLAF-ILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSE 97 (626)
Q Consensus 25 ~s~d~~~~r~~a~~~L~~-~~~-----~p~~~~~l~~-il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~ 97 (626)
.+-|.. .|+.|--.|+. ++. .++...+... +|.+-.+.++-+|...++.+...+.+... ..+.++...
T Consensus 58 ~~~d~~-~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~----~~wpelLp~ 132 (885)
T KOG2023|consen 58 KSEDVP-TRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGL----QHWPELLPQ 132 (885)
T ss_pred cccchh-HHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeeccccc----ccchhHHHH
Confidence 344555 88888888876 321 1233333322 23222266779999999988766644221 123457778
Q ss_pred HhhhhhCCcHHHHHHHHHHHHHHHhhc-------C-cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccC
Q 006912 98 LLPCLGAADRHIRSTVGTIVSVVVQLG-------G-IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD 169 (626)
Q Consensus 98 L~~~l~~~~~~vr~~~~~~l~~i~~~~-------~-~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~ 169 (626)
|.+.|.+++......+..++..|++.. . .....-++|.+++.++++++.+|..|+.|++.++-.-+..+.
T Consensus 133 L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~-- 210 (885)
T KOG2023|consen 133 LCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALY-- 210 (885)
T ss_pred HHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHH--
Confidence 888998888777777778888887642 1 233466899999999999999999999999887765544332
Q ss_pred CCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006912 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (626)
Q Consensus 170 ~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 249 (626)
..++.++..++...+|+++.||+..+.+|..+.+..|+.+.+++.++++.++...+|.+++|..+||+.+..++
T Consensus 211 ------~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 211 ------VHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred ------HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh--CccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc---CCcchhHHhhhhhhHHHHhhhcccCc---h--
Q 006912 250 EV--RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA---QLPHENLKEFLPRLVPVLLSNMIYAD---D-- 319 (626)
Q Consensus 250 ~~--~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~l~~li~~l~~~l~~~~---~-- 319 (626)
+. ..+.+.+|+++++|.+++.|...+.++.. +.+--+. +...+.++|-+.+-=..-.......+ +
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~L-----L~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe 359 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIIL-----LKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDE 359 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHH-----hcCccccccCCchhhhccchhhhchhccCccccccccccccc
Confidence 75 56789999999999999887654433211 0101110 11112222222111000000000000 0
Q ss_pred -h----hhhhhhh--ccCC-----CCCCC---CCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc
Q 006912 320 -D----ESLVEAE--EDES-----LPDRD---QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD 384 (626)
Q Consensus 320 -d----~~~~~~~--~~e~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 384 (626)
| ...|.-. .... ..=+. ..+-|.+.. .. ....|.+|.++.-+++.++..+-+
T Consensus 360 ~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~-------~L------~~~~W~vrEagvLAlGAIAEGcM~ 426 (885)
T KOG2023|consen 360 DDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKE-------HL------SSEEWKVREAGVLALGAIAEGCMQ 426 (885)
T ss_pred cccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHH-------Hc------CcchhhhhhhhHHHHHHHHHHHhh
Confidence 0 0112100 0000 00000 000000000 00 233599999999999999998854
Q ss_pred ---chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc-cchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHH
Q 006912 385 ---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (626)
Q Consensus 385 ---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (626)
..+|.++|++.+.+.+.. +.+|.-.++.++.++.... +.-..++..++..++..+-|.+.+|+++||.+++.+
T Consensus 427 g~~p~LpeLip~l~~~L~DKk---plVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtl 503 (885)
T KOG2023|consen 427 GFVPHLPELIPFLLSLLDDKK---PLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATL 503 (885)
T ss_pred hcccchHHHHHHHHHHhccCc---cceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 557889999999999998 9999999999999988764 233478888888889999999999999999999999
Q ss_pred HHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhccccc--chHHHHHHHHHHHHhhhh--HHH
Q 006912 461 SKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELA--PRLEIILQHLMMAFGKYQ--RRN 536 (626)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~--~~l~~i~~~l~~~l~~~~--~~~ 536 (626)
.+.-.+. ..+|+..++..+..+++.-..+--.--..|++++++.+|.++. .|++.+++-|+...+.-+ ++.
T Consensus 504 eE~A~~e-----LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKd 578 (885)
T KOG2023|consen 504 EEEAGEE-----LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKD 578 (885)
T ss_pred HHhccch-----hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccch
Confidence 9876543 6789999999999888753222233467888999999988773 478899998887766543 455
Q ss_pred HHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhc-------CC------CCCCc-cchHHHHHHHHHHHhcccccc
Q 006912 537 LRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQ-------LP------NSDKD-LFPLLECFTSIAQALGAGFTQ 602 (626)
Q Consensus 537 ~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~------~~~~~-~~~~l~~~~~l~~~~g~~f~~ 602 (626)
+--.++|+++++.++|..|. ||++.+.......+++ .. ..|++ +..+++.+.-+++.+|.+..|
T Consensus 579 LfPLLEClSsia~AL~~gF~--P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~ 656 (885)
T KOG2023|consen 579 LFPLLECLSSIASALGVGFL--PYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEP 656 (885)
T ss_pred HHHHHHHHHHHHHHHhcccc--ccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHH
Confidence 66899999999999999887 6777665554444331 11 11233 346788889999999998776
Q ss_pred chH--HHHHHHHHHHHHH
Q 006912 603 FAQ--PVFQRCINIIQTQ 618 (626)
Q Consensus 603 ~~~--~i~~~l~~~l~~~ 618 (626)
.+. .++..+++.+.+.
T Consensus 657 Lva~snl~~lll~C~~D~ 674 (885)
T KOG2023|consen 657 LVAQSNLLDLLLQCLQDE 674 (885)
T ss_pred HhhhccHHHHHHHHhccC
Confidence 544 3777777776654
No 12
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.95 E-value=7.7e-24 Score=212.85 Aligned_cols=525 Identities=14% Similarity=0.189 Sum_probs=364.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhc
Q 006912 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~ 141 (626)
+.+..+|.+|..-|-+.+.+....++.+.-..+...+++.|.+.+..|.+.+.+|+|.++.+.+..+...+...+...+-
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~ 95 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNML 95 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhc
Confidence 77889999999999999988877888888888999999999999999999999999999988877888888888888876
Q ss_pred cCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHH------------------------------------
Q 006912 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL------------------------------------ 185 (626)
Q Consensus 142 ~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l------------------------------------ 185 (626)
++....|..+-..|..+....+....+... ...+..+.|.+
T Consensus 96 s~keq~rdissi~Lktvi~nl~P~~~~~la---~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh 172 (1233)
T KOG1824|consen 96 SGKEQLRDISSIGLKTVIANLPPSSSSFLA---ATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFH 172 (1233)
T ss_pred cchhhhccHHHHHHHHHHhcCCCccccccc---cHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchH
Confidence 666667766666666665555532111000 01122222222
Q ss_pred -------HHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhCccchh
Q 006912 186 -------LQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLE 257 (626)
Q Consensus 186 -------~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (626)
...++++...||+.|+.+++++....+......+ +..+...+.. .....-...+++|+.++...++.+.
T Consensus 173 ~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~l---i~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~ 249 (1233)
T KOG1824|consen 173 LSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVEL---IEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFG 249 (1233)
T ss_pred HHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHH---HHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhh
Confidence 2223334456778888888888777765544332 4445544432 2334445678899999999999999
Q ss_pred hhHHHHHHHHHhhc---cCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccC-CCC
Q 006912 258 PHLRNLFEYMLQVN---KDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDE-SLP 333 (626)
Q Consensus 258 ~~l~~l~~~~~~~~---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e-~~~ 333 (626)
.|++.+++.+.... +..+++.|..+++.+..+... .+..+.||.+.++..++.++.+.++.....++|+++ ..+
T Consensus 250 ~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r--cp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~e 327 (1233)
T KOG1824|consen 250 SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR--CPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLE 327 (1233)
T ss_pred cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh--ChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhh
Confidence 99999999888776 667788999999999998876 667788999999999999998866432211111111 112
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---chHHhHHHHHHHhhcCC---------
Q 006912 334 DRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSAS--------- 401 (626)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~--------- 401 (626)
+.+++ +..++.+||++.+|.+|++|+.|+..+...-.+ .+...+-|.+...++..
T Consensus 328 d~eDd-------------e~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf 394 (1233)
T KOG1824|consen 328 DEEDD-------------EQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVF 394 (1233)
T ss_pred ccccc-------------hhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHH
Confidence 22111 111334456678999999999999876543321 12222222222222211
Q ss_pred --------------------C------------------------------CCChhHHHHHHHHHHHHHccCccchhhhH
Q 006912 402 --------------------G------------------------------DEAWKDREAAVLALGAIAEGCIKGLYPHL 431 (626)
Q Consensus 402 --------------------~------------------------------~~~~~~r~aal~~l~~l~~~~~~~~~~~l 431 (626)
| .++.+.|..++..+..+....++...+++
T Consensus 395 ~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~ 474 (1233)
T KOG1824|consen 395 HAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHI 474 (1233)
T ss_pred HHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcc
Confidence 0 11233455556666666666677777888
Q ss_pred HHHHHHHhhhcCCCc--hHHHHHHHHHHH-HHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 006912 432 SEIVAFLIPLLDDKF--PLIRSISCWTLS-RFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (626)
Q Consensus 432 ~~l~~~l~~~l~d~~--~~vr~~a~~~l~-~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (626)
+.++|.+.-.+.|.+ ...+..++.++. .++.+- +....+++..+.+.+..+..|+-+.+...|......+++
T Consensus 475 ~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~-----p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvk 549 (1233)
T KOG1824|consen 475 PSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHP-----PEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVK 549 (1233)
T ss_pred cccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCC-----hhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHH
Confidence 899999999998754 445555544433 233322 335788899999999999999999999999988888888
Q ss_pred Hhcc-------cccchHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCCC
Q 006912 509 EAAE-------ELAPRLEIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSD 579 (626)
Q Consensus 509 ~~~~-------~~~~~l~~i~~~l~~~l~~~--~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 579 (626)
...+ +..||...++...++.+... +.++++.++.|+|-++..+|..+. ..++..++.+.++++. +
T Consensus 550 virpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~--~eL~~~L~il~eRl~n----E 623 (1233)
T KOG1824|consen 550 VIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLG--NELPRTLPILLERLGN----E 623 (1233)
T ss_pred HhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHhc----h
Confidence 7632 45789999988888877655 457889999999999999996654 5788888888888874 3
Q ss_pred CccchHHHHHHHHHHHh-ccccccchHHHHHHHHHHHHHH
Q 006912 580 KDLFPLLECFTSIAQAL-GAGFTQFAQPVFQRCINIIQTQ 618 (626)
Q Consensus 580 ~~~~~~l~~~~~l~~~~-g~~f~~~~~~i~~~l~~~l~~~ 618 (626)
.-...+...++.++.+- ..+..|-+..+++.+.+.+..+
T Consensus 624 iTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~ 663 (1233)
T KOG1824|consen 624 ITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKN 663 (1233)
T ss_pred hHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHH
Confidence 33456667777777653 2366788889999888877654
No 13
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.4e-23 Score=204.45 Aligned_cols=537 Identities=17% Similarity=0.193 Sum_probs=373.1
Q ss_pred HHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHH--hcCCChHHHHHH----------------HHhhcCCCCHHHHH
Q 006912 11 EQGFNEICRLLEQQISP---SSTADKSQIWQQLQQY--SQFPDFNNYLAF----------------ILARAEGKSVEIRQ 69 (626)
Q Consensus 11 ~~~~~~l~~~l~~~~s~---d~~~~r~~a~~~L~~~--~~~p~~~~~l~~----------------il~~~~~~~~~~r~ 69 (626)
.+++.++...|...+-. ... .|..|--.|+.. .+.|+.-....+ ++....+..|..+.
T Consensus 30 ~~nf~~F~~~Ls~vl~n~~~~~~-~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s 108 (859)
T KOG1241|consen 30 SQNFPQFLVLLSEVLANDNSSDV-ARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPS 108 (859)
T ss_pred hccHHHHHHHHHHHHhccCCcHH-HHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccc
Confidence 34566666666666422 233 788888888773 234432111111 12222245556666
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCc-HHHHHHHHHHHHHHHhhcCcC----chHHHHHHHHHHhcc--
Q 006912 70 AAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAAD-RHIRSTVGTIVSVVVQLGGIA----GWLELLQALVTCLDS-- 142 (626)
Q Consensus 70 ~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~-~~vr~~~~~~l~~i~~~~~~~----~~~~ll~~l~~~l~~-- 142 (626)
.|++++-..-.. .++.+.+..+...|..-..++. ..++....+++|.++....|+ ..+.++-.+.+....
T Consensus 109 ~Aaq~va~IA~~---ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e 185 (859)
T KOG1241|consen 109 SAAQCVAAIACI---ELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEE 185 (859)
T ss_pred hHHHHHHHHHHh---hCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccC
Confidence 666665433222 2666677777777777776654 459999999999999875443 345666667777664
Q ss_pred CChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHH-
Q 006912 143 NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQ- 221 (626)
Q Consensus 143 ~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~- 221 (626)
++.++|.+|+.+|....+.....+..+ ...+.+++.+...-+.++.+++.+|+.||..++..-=+.+.++|.+
T Consensus 186 ~s~~vRLaa~~aL~nsLef~~~nF~~E------~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~a 259 (859)
T KOG1241|consen 186 TSAAVRLAALNALYNSLEFTKANFNNE------MERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQA 259 (859)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhccH------hhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999998888777555443 2346677777777888999999999999999987644445555543
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhC-------ccc------------hhhhHHHHHHHHHhhcc-------CCC
Q 006912 222 YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR-------PSF------------LEPHLRNLFEYMLQVNK-------DTD 275 (626)
Q Consensus 222 ~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-------~~~------------~~~~l~~l~~~~~~~~~-------~~~ 275 (626)
++..-...+.++++++...+++.++.+++.. ++. .+..++.++|.+++.+. +++
T Consensus 260 lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~Dd 339 (859)
T KOG1241|consen 260 LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDD 339 (859)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCccccc
Confidence 4455555667888999999999998776431 111 12233467777776642 234
Q ss_pred hHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCC
Q 006912 276 DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE 355 (626)
Q Consensus 276 ~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (626)
+....+|-.+|.-+++. ....+ ++.++|.+-..+
T Consensus 340 Wnp~kAAg~CL~l~A~~--~~D~I---v~~Vl~Fiee~i----------------------------------------- 373 (859)
T KOG1241|consen 340 WNPAKAAGVCLMLFAQC--VGDDI---VPHVLPFIEENI----------------------------------------- 373 (859)
T ss_pred CcHHHHHHHHHHHHHHH--hcccc---hhhhHHHHHHhc-----------------------------------------
Confidence 56777777776666554 22222 223333321111
Q ss_pred CCCccccccccHHHHHHHHHHHHHhhcCc----chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccch--hh
Q 006912 356 DDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL--YP 429 (626)
Q Consensus 356 ~~~~~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~--~~ 429 (626)
..++|..|.+|.-+++.+-..... .+++..+|.+.....++. -.+|.++.+++|.+++.+++.. ..
T Consensus 374 -----~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s---l~VkdTaAwtlgrI~d~l~e~~~n~~ 445 (859)
T KOG1241|consen 374 -----QNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS---LWVKDTAAWTLGRIADFLPEAIINQE 445 (859)
T ss_pred -----CCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch---hhhcchHHHHHHHHHhhchhhcccHh
Confidence 133488899999888877655433 456678888888888887 7788999999999999987544 35
Q ss_pred hHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCC--------------------------------------
Q 006912 430 HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQ-------------------------------------- 471 (626)
Q Consensus 430 ~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-------------------------------------- 471 (626)
++..+++.++..+.| +|+|..++||++-.+++.+.+.....
T Consensus 446 ~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeA 524 (859)
T KOG1241|consen 446 LLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEA 524 (859)
T ss_pred hhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHH
Confidence 666777777777755 67888888888888776654421100
Q ss_pred ----------------------------------------------------------------chhhhHHHHHHHHHHH
Q 006912 472 ----------------------------------------------------------------NGREQFEKVLMGLLKR 487 (626)
Q Consensus 472 ----------------------------------------------------------------~~~~~~~~ll~~l~~~ 487 (626)
+..+..+.++..++..
T Consensus 525 LmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri 604 (859)
T KOG1241|consen 525 LMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRI 604 (859)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHH
Confidence 0234456677777777
Q ss_pred hcc-CCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhccccCChhhhhhhh
Q 006912 488 ILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRR-NLRIVYDAIGTLADAVGFELNQPVYLDILM 565 (626)
Q Consensus 488 l~d-~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~ 565 (626)
++. .+..|...|..+++.+++.+|..|..|++.+.|-|..-+.+..+. +...++..+|-++++++.++. ||++.+|
T Consensus 605 ~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~--py~d~~m 682 (859)
T KOG1241|consen 605 FESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDIL--PYCDELM 682 (859)
T ss_pred HcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHH
Confidence 776 456788889999999999999999999999999999999766554 556899999999999999997 7999999
Q ss_pred HHHHHHHhcCCCCCCcc-chHHHHHHHHHHHhccccccchHHHHHHHHHHH
Q 006912 566 PPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINII 615 (626)
Q Consensus 566 ~~l~~~~~~~~~~~~~~-~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~~l 615 (626)
..|++-+.... -++.+ -..++|+|.||-++|.+|.||++.+|+.+-+.=
T Consensus 683 t~Lvq~Lss~~-~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 683 TVLVQCLSSPN-LHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred HHHHHHccCcc-ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99998776432 24444 378999999999999999999999999987765
No 14
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2e-20 Score=184.43 Aligned_cols=472 Identities=17% Similarity=0.246 Sum_probs=324.1
Q ss_pred HHHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHH
Q 006912 15 NEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (626)
Q Consensus 15 ~~l~~~l~~~~s~--d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~ 92 (626)
+.+.|++.+...| |+. .|+||.+++++++.+|+.|..+++++.. ++.++.+|+.+.+.|...++..+...+..++.
T Consensus 3 ddiEqav~a~ndp~vdsa-~KqqA~~y~~qiKsSp~aw~Icie~l~~-~ts~d~vkf~clqtL~e~vrekyne~nl~elq 80 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSA-TKQQAIEYLNQIKSSPNAWEICIELLIN-ETSNDLVKFYCLQTLIELVREKYNEANLNELQ 80 (980)
T ss_pred hHHHHHHHhhCCCcccHH-HHHHHHHHHHhhcCCccHHHHHHHHHHh-hcccchhhhhhHHHHHHHHHHhhccCCHHHHH
Confidence 4567788877765 778 9999999999999999999999999874 46899999999999999999888889999999
Q ss_pred HHHHhHhhhhh-----CC----cHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhch
Q 006912 93 YIKSELLPCLG-----AA----DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (626)
Q Consensus 93 ~i~~~L~~~l~-----~~----~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~ 163 (626)
.+|..++..++ ++ ..-+++.++++++.++-...+..|+.++-.+...+.-+.. . .++....+++-...
T Consensus 81 lvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~-~--~~~dfflkvllaId 157 (980)
T KOG2021|consen 81 LVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSA-I--SGLDFFLKVLLAID 157 (980)
T ss_pred HHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccc-h--hhHHHHHHHHHHhh
Confidence 99999988763 22 6789999999999999988899999999999888764321 1 12333333333332
Q ss_pred hcccc-CCC---------C----Cc-cchhhhhHHHHHHhc---CCC-ChHHHHHHHHHHHHHHhccchHHHHhHHHHHH
Q 006912 164 QVLDS-DVP---------G----LA-ECPINIFLPRLLQFF---QSP-HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQ 224 (626)
Q Consensus 164 ~~~~~-~~~---------~----~~-~~~~~~il~~l~~~l---~~~-~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~ 224 (626)
+++.+ ++. . .+ ++.+..+....++.+ +.. ++++-..+++|.+++++|+.-.+.-+ +.+++
T Consensus 158 sEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaN-d~f~n 236 (980)
T KOG2021|consen 158 SEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIAN-DYFLN 236 (980)
T ss_pred hHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhc-hhHHH
Confidence 22111 000 0 00 133444554444444 333 78899999999999999976443321 23466
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhCccchh-----------------------------------------------
Q 006912 225 GLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE----------------------------------------------- 257 (626)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----------------------------------------------- 257 (626)
.++..++ -+++|.+||.|+..++.+..+...
T Consensus 237 LLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~ 314 (980)
T KOG2021|consen 237 LLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIII 314 (980)
T ss_pred HHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhH
Confidence 6666665 567777777777666654322111
Q ss_pred ----------------hhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc----CCcchhHHhhhhhhHHHHhhhcccC
Q 006912 258 ----------------PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----QLPHENLKEFLPRLVPVLLSNMIYA 317 (626)
Q Consensus 258 ----------------~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~~~l~~li~~l~~~l~~~ 317 (626)
..+..+++++++.+.+.++++....+.||...... +......+.++++++....+.+++.
T Consensus 315 s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicyd 394 (980)
T KOG2021|consen 315 SQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYD 394 (980)
T ss_pred hhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhcc
Confidence 11223455566666666666666666666653221 2233344456667776666666664
Q ss_pred chhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHh
Q 006912 318 DDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAK 397 (626)
Q Consensus 318 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~ 397 (626)
+.. .|+ |+. .+++++...-.+|+.-...++.++..-|+.+...+-..+...
T Consensus 395 emy--~nd--------------------------dn~-tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~a 445 (980)
T KOG2021|consen 395 EMY--FND--------------------------DNV-TGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAA 445 (980)
T ss_pred HHh--hcc--------------------------cCC-CCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 421 111 110 111122223357888888888888888876666666777777
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHccCccc--------hh--hhHHHHHHHHhh--hcCCCchHHHHHHHHHHHHHHHHHh
Q 006912 398 LSASGDEAWKDREAAVLALGAIAEGCIKG--------LY--PHLSEIVAFLIP--LLDDKFPLIRSISCWTLSRFSKFIV 465 (626)
Q Consensus 398 l~~~~~~~~~~r~aal~~l~~l~~~~~~~--------~~--~~l~~l~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (626)
+.+....+|+..+.|+..+..++++.+.. +. .-+..+++.+.. .+.++|+.|+-.-+..+-++..++.
T Consensus 446 l~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~ 525 (980)
T KOG2021|consen 446 LMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFS 525 (980)
T ss_pred HhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHh
Confidence 76655566999999999999999987421 11 122234444433 3458999999999999999999887
Q ss_pred hhcCCCchhhhHHHHHHHHHH--HhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Q 006912 466 QDIGHQNGREQFEKVLMGLLK--RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAF 529 (626)
Q Consensus 466 ~~~~~~~~~~~~~~ll~~l~~--~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l 529 (626)
.. ..+++.++..++. ++++.+..||.+|...+.++++..+..+.||.+.++..+..++
T Consensus 526 ~e------sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 526 TE------SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred cc------hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 5567777776664 4667789999999999999999999999999999999888887
No 15
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.88 E-value=2.1e-18 Score=166.98 Aligned_cols=555 Identities=15% Similarity=0.225 Sum_probs=336.3
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHH
Q 006912 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (626)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~ 95 (626)
-+-++.+..+.++.. .+++|++.|.+|++.|+.|.-.-+||.. +..|+.+..|..+|.+.|..+|+-++.+.|..||
T Consensus 15 llDkVVttfyqg~g~-~q~qAq~iLtkFq~~PdaWtkad~IL~~--S~~pqskyiALs~LdklIttkWkllp~~~r~GiR 91 (1053)
T COG5101 15 LLDKVVTTFYQGDGR-KQEQAQRILTKFQELPDAWTKADYILNN--SKLPQSKYIALSLLDKLITTKWKLLPEGMRQGIR 91 (1053)
T ss_pred HHHHHHHHhcCCCch-hHHHHHHHHHHHHhCchHHHHHHHHHhc--ccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHHH
Confidence 345566677789999 9999999999999999999999999975 8899999999999999999999999999999999
Q ss_pred HhHhhhhh--CCcHHHH-------HHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhcc
Q 006912 96 SELLPCLG--AADRHIR-------STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (626)
Q Consensus 96 ~~L~~~l~--~~~~~vr-------~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~ 166 (626)
..++..+- +.+..+| +.+-..+..|++.+||..||+++|.+.+.-+ .+..+.+..+.+|..+.++.....
T Consensus 92 nyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~-~s~~vCeNnmivLklLsEEvFdfS 170 (1053)
T COG5101 92 NYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQ-ISMEVCENNMIVLKLLSEEVFDFS 170 (1053)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhcc-chHHHHhccHHHHHHhHHHHHhcc
Confidence 99988763 3344444 3455678888999999999999999998665 566788888888887777654321
Q ss_pred ccC--------CCCCccchhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHH
Q 006912 167 DSD--------VPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEV 237 (626)
Q Consensus 167 ~~~--------~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 237 (626)
..+ .++.+....++++..+.+.|.. .++.+-.+.++.+..++.|+|-... ...+++..+.+-+.. .++.
T Consensus 171 aeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yI-feTnIieLv~~~f~s-~pd~ 248 (1053)
T COG5101 171 AEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYI-FETNIIELVLEHFNS-MPDT 248 (1053)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHH-HHHHHHHHHHHHhcc-CCch
Confidence 110 0111112345666666666654 5778899999999999999984432 112334444433221 2344
Q ss_pred HHHHHHHHHHHHhhCcc-----chh-------------------------------------hhHHHHHHH---------
Q 006912 238 RKLVCAAFNLLIEVRPS-----FLE-------------------------------------PHLRNLFEY--------- 266 (626)
Q Consensus 238 ~~~~~~~l~~l~~~~~~-----~~~-------------------------------------~~l~~l~~~--------- 266 (626)
|...+.||..++.-... ..+ .++..+..+
T Consensus 249 r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~~ 328 (1053)
T COG5101 249 RVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVYI 328 (1053)
T ss_pred hHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554432110 000 001111000
Q ss_pred ------------------HHhhccCCChHHHHHHHhHHHHhhcc--------C-----C-------------c-------
Q 006912 267 ------------------MLQVNKDTDDDVALEACEFWHSYFEA--------Q-----L-------------P------- 295 (626)
Q Consensus 267 ------------------~~~~~~~~~~~v~~~a~~~l~~l~~~--------~-----~-------------~------- 295 (626)
+++...-.+.++-..|++.|..+.-. + . .
T Consensus 329 ~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~ 408 (1053)
T COG5101 329 SLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTK 408 (1053)
T ss_pred HHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhccc
Confidence 01111112233344444444443211 0 0 0
Q ss_pred ---chhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHH
Q 006912 296 ---HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (626)
Q Consensus 296 ---~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~ 372 (626)
.......+.++.-.++..|.-.++- -..+.|+. +-+|.+. . +.+.-...+...
T Consensus 409 pLrkhiY~~ilsqLrlvlienMvrPEEV-liVendeg-------EivRefv-------------k---etDtI~lYksmR 464 (1053)
T COG5101 409 PLRKHIYIGILSQLRLVLIENMVRPEEV-LIVENDEG-------EIVREFV-------------K---ETDTIELYKSMR 464 (1053)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCcceE-EEEECCCc-------HHHHHHh-------------c---cccHhHHHHHHh
Confidence 0000111122222222222211100 00000000 0000000 0 111123444555
Q ss_pred HHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccch-hhhHHHHHHHHhh-----hcCCCc
Q 006912 373 AALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIP-----LLDDKF 446 (626)
Q Consensus 373 ~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~-~~~l~~l~~~l~~-----~l~d~~ 446 (626)
.+|-.+.-..-.++-..++.-+-..+... .++|..--..++++|+++..+.+.. ..++..++..++. +.+|..
T Consensus 465 evLvyLthL~v~Dte~~mi~Klarq~dg~-EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnK 543 (1053)
T COG5101 465 EVLVYLTHLIVDDTEKYMIGKLARQLDGK-EWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNK 543 (1053)
T ss_pred hHHHHHhhhhhhhHHHHHHHHHHHHhcCC-ccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 66665554444344334445555555444 3558888999999999988775544 2455555554444 334777
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhccc--------ccchH
Q 006912 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE--------LAPRL 518 (626)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~--------~~~~l 518 (626)
..|....+..+|++..++. .+..++..++..++..|++.+..|+..||..+-++++.|+-+ -.||+
T Consensus 544 AVvASnIMyvvGQYpRFLk------ahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI 617 (1053)
T COG5101 544 AVVASNIMYVVGQYPRFLK------AHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFI 617 (1053)
T ss_pred hhhecceeeeeccchHHHH------HHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHH
Confidence 7788889999999999987 478999999999999999989999999999999999999632 35788
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcC---CCC------CCcc----chH
Q 006912 519 EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL---PNS------DKDL----FPL 585 (626)
Q Consensus 519 ~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~------~~~~----~~~ 585 (626)
..++..+.+...+......+..++|.+.+++..++.......+-.+|.-....|.+. ++. |+.. ...
T Consensus 618 ~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tvki~an~ 697 (1053)
T COG5101 618 VYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDANK 697 (1053)
T ss_pred HHHHHhhhhhcccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHHHHHHHH
Confidence 888888877666666666678899999999887754321123333443333334331 111 1211 122
Q ss_pred HHHHHHHHHHhccccccchHHH
Q 006912 586 LECFTSIAQALGAGFTQFAQPV 607 (626)
Q Consensus 586 l~~~~~l~~~~g~~f~~~~~~i 607 (626)
+.+--..+.++|.+|-|.....
T Consensus 698 ~ktnVa~ctslg~~fyPq~~~~ 719 (1053)
T COG5101 698 MKTNVAKCTSLGYRFYPQTCSS 719 (1053)
T ss_pred HHHHHHHHhhcccccchHHHHH
Confidence 3333344556788887754443
No 16
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.88 E-value=1.3e-17 Score=168.71 Aligned_cols=457 Identities=17% Similarity=0.237 Sum_probs=337.9
Q ss_pred CChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhhchh
Q 006912 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQ 164 (626)
Q Consensus 86 l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~-~~~~r~~~l~~l~~l~~~~~~ 164 (626)
+-++....+...++..+...-..||+.++.+++.++...+...+.+++..+.+.+... .+......+.+|+.++...+.
T Consensus 167 ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~ 246 (1233)
T KOG1824|consen 167 LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH 246 (1233)
T ss_pred cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 3344555566666666677788899999999999999888888899999999988764 556677889999999998887
Q ss_pred ccccCCCCCccchhhhhHHHHHHhc---CCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcC-CC-------
Q 006912 165 VLDSDVPGLAECPINIFLPRLLQFF---QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN-DP------- 233 (626)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l---~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~------- 233 (626)
.+. .+...++|.+.++. +..+.++|...++++..++...|..+.++.+.+++.+.+.+. ||
T Consensus 247 r~~--------~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~ 318 (1233)
T KOG1824|consen 247 RFG--------SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTE 318 (1233)
T ss_pred hhh--------cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCc
Confidence 665 34678889998888 557789999999999999999999998888888877776421 11
Q ss_pred --------------------------CHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHH
Q 006912 234 --------------------------SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (626)
Q Consensus 234 --------------------------~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~ 287 (626)
++.||.+|.+|+..++....+.+....+.+-+.++..+++.++.|+...+..+.
T Consensus 319 eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi 398 (1233)
T KOG1824|consen 319 EDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYI 398 (1233)
T ss_pred cchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 157999999999999999998888888888888999999999999999888877
Q ss_pred HhhccCCcc-------------------hhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccC
Q 006912 288 SYFEAQLPH-------------------ENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRL 348 (626)
Q Consensus 288 ~l~~~~~~~-------------------~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 348 (626)
.+...-..+ ..+..-...++..+-+.+.
T Consensus 399 ~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr--------------------------------- 445 (1233)
T KOG1824|consen 399 ALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLR--------------------------------- 445 (1233)
T ss_pred HHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHh---------------------------------
Confidence 765541000 1111111111111111111
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCcc
Q 006912 349 HGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK 425 (626)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~ 425 (626)
......|..+...|..+...+|+ +.++.++|.+...+++.++.+-....+..+..+.++.+.++
T Consensus 446 -------------~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~ 512 (1233)
T KOG1824|consen 446 -------------EKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPE 512 (1233)
T ss_pred -------------hccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChh
Confidence 00012355667777777777765 56778889998888876433345556666667777777788
Q ss_pred chhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCC---CchhhhHHHHHHHHHHHhc--cCCHHHHHHHH
Q 006912 426 GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH---QNGREQFEKVLMGLLKRIL--DTNKRVQEAAC 500 (626)
Q Consensus 426 ~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~~~~~ll~~l~~~l~--d~~~~v~~~a~ 500 (626)
.+.++++.+.|.+.....|+-+.|-..|+.+.+++++.+.+. ++ .+..+++..++...++.+. |.+..||.+|.
T Consensus 513 ~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl-~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraI 591 (1233)
T KOG1824|consen 513 VFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPL-QPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAI 591 (1233)
T ss_pred hcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhccc-CCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 899999999999999999999999999999999999988664 22 3567888999999888876 55789999999
Q ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCCCC
Q 006912 501 SAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDK 580 (626)
Q Consensus 501 ~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 580 (626)
.+++.++..+|+.+...++.+++.+...+++ +..+-.++.|+.-++.+. -.+...+.+..+++.+...+.+.. +.
T Consensus 592 scmgq~i~~fgD~l~~eL~~~L~il~eRl~n--EiTRl~AvkAlt~Ia~S~-l~i~l~~~l~~il~~l~~flrK~~--r~ 666 (1233)
T KOG1824|consen 592 SCMGQIIANFGDFLGNELPRTLPILLERLGN--EITRLTAVKALTLIAMSP-LDIDLSPVLTEILPELASFLRKNQ--RA 666 (1233)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc--hhHHHHHHHHHHHHHhcc-ceeehhhhHHHHHHHHHHHHHHHH--HH
Confidence 9999999999988888888888888777664 334447888888776553 222211467777777777666421 11
Q ss_pred ccchHHHHHHHHHHHhcccccc
Q 006912 581 DLFPLLECFTSIAQALGAGFTQ 602 (626)
Q Consensus 581 ~~~~~l~~~~~l~~~~g~~f~~ 602 (626)
-....+..+..+.+..|..+.+
T Consensus 667 lr~~~l~a~~~L~~~~~~~~~~ 688 (1233)
T KOG1824|consen 667 LRLATLTALDKLVKNYSDSIPA 688 (1233)
T ss_pred HHHHHHHHHHHHHHHHhccccH
Confidence 1135566666677777666554
No 17
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.87 E-value=3.3e-18 Score=173.25 Aligned_cols=525 Identities=15% Similarity=0.177 Sum_probs=305.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhcc-----CChhHH
Q 006912 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-----MSPSNQ 91 (626)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~-----l~~~~~ 91 (626)
.+..+....|+|+. .++.||+.|++.+++++|...|.++... ...+-.+|..|++.+||.|.++|.. +.++..
T Consensus 6 vv~~~~~aqs~~p~-s~k~AE~~Lrqwe~q~gF~~kL~~I~~~-~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~ 83 (947)
T COG5657 6 VVKQLDLAQSPDPP-SVKCAEERLRQWEKQHGFALKLLSINLS-AFNSMSLRWAALIQFKNYIDKHWREENGNSILPDEN 83 (947)
T ss_pred HHHHHHhhcCCCCc-hHhhHHHHHHhhhccccHHHHHHHHHhc-cccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccc
Confidence 34566777899999 9999999999999999999889998875 3678899999999999999999985 566666
Q ss_pred HHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCC
Q 006912 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (626)
Q Consensus 92 ~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~ 171 (626)
..||..++.++-+.+..+.-+.+.+++.|++.+.|..||+++|.+...+++.|..+-.+.+.++..+++......+.+
T Consensus 84 v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd-- 161 (947)
T COG5657 84 VLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSD-- 161 (947)
T ss_pred hHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccH--
Confidence 799999999987766666668899999999999999999999999999999888888889999999998887544322
Q ss_pred CCccchhhhhHHHHHHhcCC--CChHHH-----------HHHHHHHHHHH----hccchHHHHhHHHHHHHHHHhcCCCC
Q 006912 172 GLAECPINIFLPRLLQFFQS--PHTSLR-----------KLSLGSVNQFI----MLMPSALFVSMDQYLQGLFLLSNDPS 234 (626)
Q Consensus 172 ~~~~~~~~~il~~l~~~l~~--~~~~vr-----------~~al~~l~~~~----~~~~~~~~~~~~~~l~~l~~~~~~~~ 234 (626)
.+|......+.+.+.+.+-. +.+.++ ..+++.+..+. +..|+.+.+.++.++......+...+
T Consensus 162 ~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F~klls~~~ 241 (947)
T COG5657 162 ALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKLLSYSN 241 (947)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Confidence 23323334444444443322 111111 12333333333 22455556666666766666554322
Q ss_pred HH-------------HHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCC-----ChHHHHHHHhHHHHhhccCC--
Q 006912 235 AE-------------VRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT-----DDDVALEACEFWHSYFEAQL-- 294 (626)
Q Consensus 235 ~~-------------~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~v~~~a~~~l~~l~~~~~-- 294 (626)
+. +....++.+..+...+|+.+.+++-++++.++..+.+- .+.+...++.++....+.+.
T Consensus 242 ~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~k~~irk 321 (947)
T COG5657 242 PVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVIKYPIRK 321 (947)
T ss_pred hhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhhccccHH
Confidence 22 23346677777778888989887777777766654331 23344555566555555311
Q ss_pred c----chhHHhhhhhhHHHH-hhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHH
Q 006912 295 P----HENLKEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (626)
Q Consensus 295 ~----~~~~~~~l~~li~~l-~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 369 (626)
. .+.......+++..+ ++.+...++|.|.|.+|+.| |+|. . .. .+...++|.
T Consensus 322 ~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~e-------yire---~--------s~-----~dye~~vr~ 378 (947)
T COG5657 322 TAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLE-------YIRE---Q--------SK-----TDYEVNVRP 378 (947)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHH-------HHHh---h--------cc-----ccchhhhhH
Confidence 1 111223445566655 46677788888888776654 4441 0 00 111235788
Q ss_pred HHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCC----C
Q 006912 370 CSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD----K 445 (626)
Q Consensus 370 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d----~ 445 (626)
.+...++..-..+|.-+.+.+...+.+..+.|+...-..+.-++.++..+.......+.+++...-....+.+-+ .
T Consensus 379 ~~~~~l~~~f~~~~~i~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g~g~~av~~~~~~v~~~~~~~~pd~~s~~~~~ 458 (947)
T COG5657 379 CIENELKDLFDVFGRIAVGHELTVIESEATTPNILDEARQLFAAYASFGLGVEAVNRMVDFVKFLGSIIYPDLLSPNEII 458 (947)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccCcccCc
Confidence 888888888888885445566666666666652111222333333332222211111122222222222222222 2
Q ss_pred chHHHHHH-HHHHHHHHHHH-hhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh---cccccchHHH
Q 006912 446 FPLIRSIS-CWTLSRFSKFI-VQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA---AEELAPRLEI 520 (626)
Q Consensus 446 ~~~vr~~a-~~~l~~l~~~~-~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~---~~~~~~~l~~ 520 (626)
+.++++.. ...+..-.... ++.. ...-+-.+.+..+.....| ..+-.....+...+.+.. +....+-+++
T Consensus 459 ~~ri~~~~i~~i~~~r~~l~~~~~~---~~~fl~~~~F~~yt~~~id--~~~lLT~~~a~~t~~~~~n~~~~~~~~~len 533 (947)
T COG5657 459 HLRILRSRIAYILTFRNQLDSSELS---ESKFLASQFFVNYTTACID--AVVLLTTREAYSTIFDDWNFSVCSKIGLLEN 533 (947)
T ss_pred eeEEehhccchheechhhhhhhhhh---hHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcccccccccccHHH
Confidence 34443322 22221111111 1000 0000111111111111111 122222333333333332 2234455666
Q ss_pred HHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcC
Q 006912 521 ILQHLMMAFGKYQR-RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL 575 (626)
Q Consensus 521 i~~~l~~~l~~~~~-~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 575 (626)
++-.+...+...+. +.+...+++++.++...+.... |...++++.+-+.|...
T Consensus 534 l~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~--pl~~~il~~L~~lv~~~ 587 (947)
T COG5657 534 LILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIA--PLGSEILQLLDNLVEIN 587 (947)
T ss_pred HHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhh--hhHHHHHHHHHHHHHHH
Confidence 66666666665543 5566889999999988776654 47777777776666543
No 18
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.7e-16 Score=160.10 Aligned_cols=542 Identities=15% Similarity=0.160 Sum_probs=348.8
Q ss_pred HHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChh
Q 006912 11 EQGFNEICRLLEQQISP-SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (626)
Q Consensus 11 ~~~~~~l~~~l~~~~s~-d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~ 89 (626)
+.....+++++..++++ +.+ ....++++|++++.+|..|....+++.. +...++|.++|+.|.-.|..+|..++++
T Consensus 3 ~~~Ia~v~~~v~~lY~~~~~~-~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~--~k~~evqyFGAltL~~ki~~~~e~~~~~ 79 (982)
T KOG2022|consen 3 SDLIATVEELVTTLYSHRNHE-NDAITQKWLQDAQCSQQGWHFSWQLLQP--DKSSEVQYFGALTLHDKINTRWEECPAN 79 (982)
T ss_pred chHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHhhHHHHHHHHHHcCC--CchhHHHHHhHHHHHHHHHhhhccCChh
Confidence 33567788999999987 555 8999999999999999999988888875 7778889999999999999999999999
Q ss_pred HHHHHHHhHhhhhh---CCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhH--HHHHHHHHhhhchh
Q 006912 90 NQQYIKSELLPCLG---AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEG--AMDALSKICEDIPQ 164 (626)
Q Consensus 90 ~~~~i~~~L~~~l~---~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~--~l~~l~~l~~~~~~ 164 (626)
.+.+++..++..+. .....|-+..+..++.+.-...++.||+-+..+..+++........+ -+.++.+.....+.
T Consensus 80 ~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~ 159 (982)
T KOG2022|consen 80 EAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPA 159 (982)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccCcH
Confidence 99999998888763 23455555555566666655567899999988888887532111111 11222222323333
Q ss_pred cccc-CCC----CC----ccchhhhhHHHHHHhcCCC---Ch-----HHHHHHHHHHHHHHhccchH---HHHhHHHHHH
Q 006912 165 VLDS-DVP----GL----AECPINIFLPRLLQFFQSP---HT-----SLRKLSLGSVNQFIMLMPSA---LFVSMDQYLQ 224 (626)
Q Consensus 165 ~~~~-~~~----~~----~~~~~~~il~~l~~~l~~~---~~-----~vr~~al~~l~~~~~~~~~~---~~~~~~~~l~ 224 (626)
+... ..+ +. +......+.+.+-..++.. .+ -.+..+++|+..++.++... +......++.
T Consensus 160 e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~ll~ 239 (982)
T KOG2022|consen 160 EFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVLLD 239 (982)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 2110 000 00 0011222222222333332 22 46778899999888754211 1111111111
Q ss_pred HHH------------------H---------------------------------------------hcCCCC--HHHHH
Q 006912 225 GLF------------------L---------------------------------------------LSNDPS--AEVRK 239 (626)
Q Consensus 225 ~l~------------------~---------------------------------------------~~~~~~--~~~~~ 239 (626)
.+. + ...+++ ++.-.
T Consensus 240 ~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~i~ 319 (982)
T KOG2022|consen 240 VLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEEIV 319 (982)
T ss_pred HHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHH
Confidence 111 0 001111 11111
Q ss_pred HHHHHHHHHHhhCcc---------chhhhHHHHHHHHHhhccC-----CChHHHHHHHhHHHHhhcc---------CCcc
Q 006912 240 LVCAAFNLLIEVRPS---------FLEPHLRNLFEYMLQVNKD-----TDDDVALEACEFWHSYFEA---------QLPH 296 (626)
Q Consensus 240 ~~~~~l~~l~~~~~~---------~~~~~l~~l~~~~~~~~~~-----~~~~v~~~a~~~l~~l~~~---------~~~~ 296 (626)
..+......++.+.. .-..++..++..++.+..- .++.+...++.||.++.+. +...
T Consensus 320 ~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~~~ 399 (982)
T KOG2022|consen 320 TFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQIKK 399 (982)
T ss_pred HHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCcch
Confidence 222222222221111 0112223344444444322 2456677888999988665 1222
Q ss_pred hhHH-hhhhhhHHHHhhhcccCchh-hhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHH
Q 006912 297 ENLK-EFLPRLVPVLLSNMIYADDD-ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAA 374 (626)
Q Consensus 297 ~~~~-~~l~~li~~l~~~l~~~~~d-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~ 374 (626)
..+. +...+++..+++.+....++ ...|+.++ ....-.+|+.-.++
T Consensus 400 ~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s--------------------------------~e~F~~YR~diSD~ 447 (982)
T KOG2022|consen 400 QILSQQIYAQLVEILLKKLALPSKEIWLSWSSDS--------------------------------REQFESYRKDISDL 447 (982)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcch--------------------------------HHHHHHHHHHHHHH
Confidence 3333 77888888888777654432 22343221 11111467777778
Q ss_pred HHHHHhhcCcchHHhHHHHHHHhhcCCC--CCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhh-hcCCCchHHHH
Q 006912 375 LDVLSNVFGDEILPTLMPVIQAKLSASG--DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP-LLDDKFPLIRS 451 (626)
Q Consensus 375 l~~l~~~~~~~~~~~l~~~l~~~l~~~~--~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~-~l~d~~~~vr~ 451 (626)
+...-..+|+..+..+...+.+.+.+.+ +..|..-++.++++..++++.++...+.++.++...-. .+.-.++..-.
T Consensus 448 ~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~ 527 (982)
T KOG2022|consen 448 LMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLS 527 (982)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHH
Confidence 8877778888888888899988887643 45599999999999999999876666666665543322 11234888889
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh
Q 006912 452 ISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK 531 (626)
Q Consensus 452 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~ 531 (626)
.+...+|.++.|+.+ ++-++.+.+|.++..++. +..-..+...+.++|+.|++++.||...++..+-..+.+
T Consensus 528 Tss~~igs~s~~l~e------~P~~ln~sl~~L~~~Lh~--sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~ 599 (982)
T KOG2022|consen 528 TSSDLIGSLSNWLGE------HPMYLNPSLPLLFQGLHN--SKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNK 599 (982)
T ss_pred HHHHHHHHHHHHHhc------CCcccCchHHHHHHHhcC--chHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcc
Confidence 999999999999985 578899999999999974 444556777799999999999999999999998888887
Q ss_pred hh--HHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcC-CC--CCCc--c--chHHHHHHHHHHHh
Q 006912 532 YQ--RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL-PN--SDKD--L--FPLLECFTSIAQAL 596 (626)
Q Consensus 532 ~~--~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~--~~~~--~--~~~l~~~~~l~~~~ 596 (626)
.. +..+..++.++|.+.+....+. .|.|+.+++.++...++.. .. ++.+ + .-.+.|+..+...+
T Consensus 600 ~~~~~S~~~klm~sIGyvls~~~pEe-~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL 672 (982)
T KOG2022|consen 600 SNAKDSDRLKLMKSIGYVLSRLKPEE-IPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSL 672 (982)
T ss_pred cccCchHHHHHHHHHHHHHHhccHHh-HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 54 4567799999999999988665 4679999999999988764 21 1111 1 13356677776664
No 19
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.85 E-value=6.7e-17 Score=159.38 Aligned_cols=562 Identities=14% Similarity=0.144 Sum_probs=368.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh-c---CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH--
Q 006912 8 QPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYS-Q---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT-- 81 (626)
Q Consensus 8 ~~~~~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~-~---~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~-- 81 (626)
.+++..-..+..+|-.+.+..+. .|+.|...|..=. + .|-|...|.-++ +. +.++.-|+.-.-.+-+.+-+
T Consensus 356 ~~~e~kEr~i~~llLkvKNG~pp-mRk~~LR~ltdkar~~ga~~lfnqiLpllM-s~-tLeDqerhllVkvidriLyklD 432 (1172)
T KOG0213|consen 356 EDEEGKERKIMRLLLKVKNGTPP-MRKSALRILTDKARNFGAGPLFNQILPLLM-SP-TLEDQERHLLVKVIDRILYKLD 432 (1172)
T ss_pred CcccccHHHHHHHHHhhcCCCch-hHHHHHHHHHHHHHhhccHHHHHHHHHHHc-Cc-cccchhhhhHHHHHHHHHHhhc
Confidence 44455555666777777788888 9999999997632 2 233555444433 32 77777787776666555422
Q ss_pred ----hhcc----------CChhHHH-----HHHHhHhh---------hh----hCCcHHHHHHHHHHHHHHHhhcCcCch
Q 006912 82 ----AYKS----------MSPSNQQ-----YIKSELLP---------CL----GAADRHIRSTVGTIVSVVVQLGGIAGW 129 (626)
Q Consensus 82 ----~~~~----------l~~~~~~-----~i~~~L~~---------~l----~~~~~~vr~~~~~~l~~i~~~~~~~~~ 129 (626)
.|-+ ++++.+. .|...|.. .+ .+.++.||+..+.+++.++... ..
T Consensus 433 dlvrpYVhkILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal---gi 509 (1172)
T KOG0213|consen 433 DLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL---GI 509 (1172)
T ss_pred ccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh---Cc
Confidence 1211 3333332 23333322 11 2358999999999999999764 46
Q ss_pred HHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 006912 130 LELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (626)
Q Consensus 130 ~~ll~~l~~~l~~~-~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (626)
|.++|+|...+.|. +|..|+.++.+...++...+-... .++..++..+-.++.|.+..||.-+..++..++
T Consensus 510 p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvl--------phl~~lv~ii~~gl~De~qkVR~itAlalsala 581 (1172)
T KOG0213|consen 510 PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVL--------PHLKPLVKIIEHGLKDEQQKVRTITALALSALA 581 (1172)
T ss_pred HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhh--------hhhHHHHHHHHHhhcccchhhhhHHHHHHHHHH
Confidence 89999999999986 899999999999999998876554 345777778888899999999999999999998
Q ss_pred hccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHHHhhccCCChHHHHHHHhHHH
Q 006912 209 MLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWH 287 (626)
Q Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~v~~~a~~~l~ 287 (626)
+...+.-...++.++..|++-+..........-+.+++.++-........|. .+++-.+..-....|++.+...+..+.
T Consensus 582 eaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~ 661 (1172)
T KOG0213|consen 582 EAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVK 661 (1172)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 8766655667778888888876544334444555666666544333333333 356666667778889889998888888
Q ss_pred HhhccCC-cchhHHhhhhhhHHHHhhh-----cccCchhhhhhhhhccC-CCCCCCCCCCcccccccCCCCCCCCCCCcc
Q 006912 288 SYFEAQL-PHENLKEFLPRLVPVLLSN-----MIYADDDESLVEAEEDE-SLPDRDQDLKPRFHSSRLHGSENPEDDDDD 360 (626)
Q Consensus 288 ~l~~~~~-~~~~~~~~l~~li~~l~~~-----l~~~~~d~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (626)
.+|.... ..+.++ ..++|.++.. +..........-+-.-+ ....+.. +...+.. ++..++.+
T Consensus 662 qcc~t~Gv~~~y~r---~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~---~~v~R~v----~~lkde~e- 730 (1172)
T KOG0213|consen 662 QCCATDGVEPAYIR---FDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD---PIVSRVV----LDLKDEPE- 730 (1172)
T ss_pred HHhcccCCCHHHHh---hhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch---HHHHHHh----hhhccccH-
Confidence 8877621 111111 1222322211 11100000000000000 0000000 0000000 11111111
Q ss_pred ccccccHHHHHHHHHHHHHhhcCc-c----hHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHH
Q 006912 361 IVNVWNLRKCSAAALDVLSNVFGD-E----ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIV 435 (626)
Q Consensus 361 ~~~~~~~r~~a~~~l~~l~~~~~~-~----~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~ 435 (626)
..|+..+.+.+.+...+|. + ....++.-+.-.++..+ .... ..+..++.+...+.....+|++.|+
T Consensus 731 -----~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt---t~d~-vml~gfg~V~~~lg~r~kpylpqi~ 801 (1172)
T KOG0213|consen 731 -----QYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT---TEDS-VMLLGFGTVVNALGGRVKPYLPQIC 801 (1172)
T ss_pred -----HHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc---cchh-hhhhhHHHHHHHHhhccccchHHHH
Confidence 3788999999999888875 2 23445555555555543 2222 4567788888887777789999999
Q ss_pred HHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc-ccc
Q 006912 436 AFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-EEL 514 (626)
Q Consensus 436 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~-~~~ 514 (626)
..++..|+++.+.||..|+..+++++..+... .-...+..+=..|...+....|.|--..+.||..++...| ...
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc----~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTC----GEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhc----cHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999887654 2234455555567788888899999999999999999886 567
Q ss_pred cchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCCCCcc-chHHHHHHHHH
Q 006912 515 APRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIA 593 (626)
Q Consensus 515 ~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~l~~~~~l~ 593 (626)
.|-+..+++.|...+.+.+.++++.++..++.++...+ ++..+.-+-.+.-.|++.++. ..+++ ..+.+++|+|+
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp-E~v~aREWMRIcfeLlelLka---hkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP-EYVSAREWMRICFELLELLKA---HKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhHHH
Confidence 88899999999999999999999999999999987654 443222222232234444443 23444 48899999999
Q ss_pred HHhccccccchHHHHHHHHHHHHH
Q 006912 594 QALGAGFTQFAQPVFQRCINIIQT 617 (626)
Q Consensus 594 ~~~g~~f~~~~~~i~~~l~~~l~~ 617 (626)
+++|.+ .++..|++.|.-
T Consensus 954 kaIGPq------dVLatLlnnLkv 971 (1172)
T KOG0213|consen 954 KAIGPQ------DVLATLLNNLKV 971 (1172)
T ss_pred HhcCHH------HHHHHHHhcchH
Confidence 999873 455555555543
No 20
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.5e-17 Score=163.22 Aligned_cols=476 Identities=16% Similarity=0.176 Sum_probs=343.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhc
Q 006912 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~ 141 (626)
..++.+|..-.++- ..+..+-. ..+.....+.+.++..+.-+.+.+|++.+.|+..+........-..+.+.+.++++
T Consensus 67 ~~~~~~~~~~~v~~-~~~a~~~~-~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~ 144 (569)
T KOG1242|consen 67 LHNDNLRNNVVVLE-GTLAFHLQ-IVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT 144 (569)
T ss_pred chhHHHhhhhHHHH-HHHHHhcc-ccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc
Confidence 44777776654443 34443322 22334455677888888889999999999999988866544455677888888888
Q ss_pred cCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCCh-HHHHHHHHHHHHHHhccchHHHHhHH
Q 006912 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLMPSALFVSMD 220 (626)
Q Consensus 142 ~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~-~vr~~al~~l~~~~~~~~~~~~~~~~ 220 (626)
...-..|.++...+..++...+..... -..++..+...+.+... ..|..++-++......++..+.+++.
T Consensus 145 ~~~~~~~~~aa~~~ag~v~g~~i~~~~---------~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv 215 (569)
T KOG1242|consen 145 STKIAERAGAAYGLAGLVNGLGIESLK---------EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV 215 (569)
T ss_pred cccHHHHhhhhHHHHHHHcCcHHhhhh---------hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH
Confidence 777778888888888887776543221 15667778888888554 44556777777777777777788888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHH
Q 006912 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (626)
Q Consensus 221 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 300 (626)
.+++.++..+.|....+|..+..+...+....+.. -++.+++.++..+.+..+..+..+++.++.++.. ....+.
T Consensus 216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~---aVK~llpsll~~l~~~kWrtK~aslellg~m~~~--ap~qLs 290 (569)
T KOG1242|consen 216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY---AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADC--APKQLS 290 (569)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc---hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh--chHHHH
Confidence 99999999999999999999999998888765542 2234455555444444777889999999988876 566677
Q ss_pred hhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh
Q 006912 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (626)
Q Consensus 301 ~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~ 380 (626)
-.++.++|.+...|.++.. .+|+++..++..++.
T Consensus 291 ~~lp~iiP~lsevl~DT~~----------------------------------------------evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 291 LCLPDLIPVLSEVLWDTKP----------------------------------------------EVRKAGIETLLKFGS 324 (569)
T ss_pred HHHhHhhHHHHHHHccCCH----------------------------------------------HHHHHHHHHHHHHHH
Confidence 7788888888776665432 279999999999999
Q ss_pred hcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHH--HHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHH
Q 006912 381 VFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGA--IAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLS 458 (626)
Q Consensus 381 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~--l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~ 458 (626)
.....-+..++|.+...+.++. -++.++ +..++. +.+... .+.+.-++|.+.+.+.+.+...++.++..++
T Consensus 325 vidN~dI~~~ip~Lld~l~dp~---~~~~e~-~~~L~~ttFV~~V~---~psLalmvpiL~R~l~eRst~~kr~t~~Iid 397 (569)
T KOG1242|consen 325 VIDNPDIQKIIPTLLDALADPS---CYTPEC-LDSLGATTFVAEVD---APSLALMVPILKRGLAERSTSIKRKTAIIID 397 (569)
T ss_pred hhccHHHHHHHHHHHHHhcCcc---cchHHH-HHhhcceeeeeeec---chhHHHHHHHHHHHHhhccchhhhhHHHHHH
Confidence 9988668889999999999986 344333 333332 222221 3778889999999999988889999999999
Q ss_pred HHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHH
Q 006912 459 RFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLR 538 (626)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~ 538 (626)
+++....+ +....+|++.++|.+-..+.+..|.+|..+..||+.+.+..++.-. +...+.+...+.......-+
T Consensus 398 Nm~~LveD---p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k~~~~~ 471 (569)
T KOG1242|consen 398 NMCKLVED---PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEKSLVDR 471 (569)
T ss_pred HHHHhhcC---HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccchhhhhh
Confidence 99987732 2367899999999999999999999999999999999998875322 44444455545444433333
Q ss_pred -HHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCCCCcc-chHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Q 006912 539 -IVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQ 616 (626)
Q Consensus 539 -~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~~l~ 616 (626)
.+...++.+....+. .++..+++.++......-. ++.+ ...+..+..+-..+|..|.||+.++++.+.+.+.
T Consensus 472 ~g~aq~l~evl~~~~v-----~~~~~~~~~~~a~~~~~~~-~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~a 545 (569)
T KOG1242|consen 472 SGAAQDLSEVLAGLGV-----EKVEDILPEILANASSVLI-DERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLA 545 (569)
T ss_pred HHHhhhHHHHHhcccc-----hHHHHHHHHHHHHHhhccc-hhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhh
Confidence 556666666665553 3566677766655443221 2222 2445556666777888999999999999999987
Q ss_pred HH
Q 006912 617 TQ 618 (626)
Q Consensus 617 ~~ 618 (626)
+.
T Consensus 546 d~ 547 (569)
T KOG1242|consen 546 DN 547 (569)
T ss_pred hc
Confidence 54
No 21
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.2e-16 Score=154.53 Aligned_cols=459 Identities=16% Similarity=0.227 Sum_probs=303.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhh---CCcHHHH
Q 006912 34 SQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG---AADRHIR 110 (626)
Q Consensus 34 ~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~---~~~~~vr 110 (626)
..|..+|.+|+++.+.|..+-+++.. ..+-+...+|++.++++++..+..+++.....+|+.+++.++ +..+.+|
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~--~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~ 79 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQ--KCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIR 79 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHH
Confidence 46889999999999999999999976 577888999999999999999999999898999998888764 3444899
Q ss_pred HHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCC-----------ccchhh
Q 006912 111 STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL-----------AECPIN 179 (626)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~-----------~~~~~~ 179 (626)
.+++-+++.++-..+ .|.+-++.+.+.+.+..+. ..++..+.+..|++..+..... +.....
T Consensus 80 tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~~~-----~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~ 152 (559)
T KOG2081|consen 80 TQLAVAVAALALHMP--EWVNPIFELVRALSNKHPA-----VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVS 152 (559)
T ss_pred HHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCCcc-----HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHH
Confidence 999999999997653 7887777777777776653 4455666666666543211000 012223
Q ss_pred hhHHHHHHhcCCC---ChHHHHHHHHHHHHHHh--ccchHHHHhHHHHHHHHHHhcC-----------------------
Q 006912 180 IFLPRLLQFFQSP---HTSLRKLSLGSVNQFIM--LMPSALFVSMDQYLQGLFLLSN----------------------- 231 (626)
Q Consensus 180 ~il~~l~~~l~~~---~~~vr~~al~~l~~~~~--~~~~~~~~~~~~~l~~l~~~~~----------------------- 231 (626)
.++..+..+++++ +..+-..+++|++++.. ..|....-....++..++..++
T Consensus 153 ~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~ 232 (559)
T KOG2081|consen 153 KVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRS 232 (559)
T ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhh
Confidence 3444444455443 35677889999988876 2332221111112222222222
Q ss_pred -------------------------CCCHHHHHHHHHHHHHHHh-------hCccchhhhHHHHHHHHHhhccCCChHHH
Q 006912 232 -------------------------DPSAEVRKLVCAAFNLLIE-------VRPSFLEPHLRNLFEYMLQVNKDTDDDVA 279 (626)
Q Consensus 232 -------------------------~~~~~~~~~~~~~l~~l~~-------~~~~~~~~~l~~l~~~~~~~~~~~~~~v~ 279 (626)
..+.+.+.+.++.+..+.+ ..++.+ -.++..++-...+.+.++.
T Consensus 233 ~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~----l~~vellLl~~~h~~~evi 308 (559)
T KOG2081|consen 233 EGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEF----LRIVELLLLVAGHNDTEVI 308 (559)
T ss_pred ccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc----hhHHHHHHHhccCCchhhh
Confidence 1122333333333333322 222211 1244445555667777889
Q ss_pred HHHHhHHHHhhcc------CCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCC
Q 006912 280 LEACEFWHSYFEA------QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSEN 353 (626)
Q Consensus 280 ~~a~~~l~~l~~~------~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 353 (626)
..++.+|..+.+. ......++|+..+++..+....++..+. ++
T Consensus 309 e~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~-------------------------------~~ 357 (559)
T KOG2081|consen 309 EASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQ-------------------------------FD 357 (559)
T ss_pred hhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCcc-------------------------------cc
Confidence 9999999998766 1223456899999999998888765511 01
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHhhcCc-chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHH
Q 006912 354 PEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS 432 (626)
Q Consensus 354 ~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~ 432 (626)
..+ +.+.....|....+.+..++-..|+ +.+..+...+.+ +++. |+.-+|+++.+..++.+....-.+.++
T Consensus 358 l~E---e~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~---We~~EAaLF~l~~~~~~~~~~e~~i~p 429 (559)
T KOG2081|consen 358 LPE---EESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNAS---WEEVEAALFILRAVAKNVSPEENTIMP 429 (559)
T ss_pred Ccc---chhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCc---hHHHHHHHHHHHHHhccCCccccchHH
Confidence 111 1122345788899999999988887 555444444443 3445 999999999999999988654455555
Q ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcc
Q 006912 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (626)
Q Consensus 433 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~ 512 (626)
.++..+.+. +....+|++++..+|.+++|+.. ++..+..++..+...++... ...++..++..++..|..
T Consensus 430 evl~~i~nl--p~Q~~~~~ts~ll~g~~~ew~~~------~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~ 499 (559)
T KOG2081|consen 430 EVLKLICNL--PEQAPLRYTSILLLGEYSEWVEQ------HPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRV 499 (559)
T ss_pred HHHHHHhCC--ccchhHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHH
Confidence 566554443 22333999999999999999974 57778888888888887644 788899999999999987
Q ss_pred cccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc
Q 006912 513 ELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (626)
Q Consensus 513 ~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~ 554 (626)
...++++.+...+..+....-++.-...+..++.++...+..
T Consensus 500 ~~~~l~~~~~~l~~~l~~~~~~~e~a~l~~~~s~i~~~lp~~ 541 (559)
T KOG2081|consen 500 QMTCLIPSLLELIRSLDSTQINEEAACLLQGISLIISNLPAH 541 (559)
T ss_pred HhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHh
Confidence 777777766665443333322222223777888888777654
No 22
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.83 E-value=6.3e-16 Score=148.50 Aligned_cols=522 Identities=11% Similarity=0.078 Sum_probs=342.2
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHh----c-CCChHH-HHHHHHhh-cCCCCHHHHHHHHHHHH----HHHH-----Hhhc
Q 006912 21 LEQQISPSSTADKSQIWQQLQQYS----Q-FPDFNN-YLAFILAR-AEGKSVEIRQAAGLLLK----NNLR-----TAYK 84 (626)
Q Consensus 21 l~~~~s~d~~~~r~~a~~~L~~~~----~-~p~~~~-~l~~il~~-~~~~~~~~r~~a~~~l~----~~i~-----~~~~ 84 (626)
.+...++|.+ +..+|.--|.++- + -|.+.. .|..+... -+++++++..+|.-+-. ..+. ++.+
T Consensus 227 ceatq~~d~e-~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~p 305 (858)
T COG5215 227 CEATQGNDEE-LQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP 305 (858)
T ss_pred ehhccCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcc
Confidence 3445677877 8888888888742 2 233332 22322221 13778888777643321 1111 1111
Q ss_pred cCCh-------hHHHHHHHhHhhhhhC-------CcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhH
Q 006912 85 SMSP-------SNQQYIKSELLPCLGA-------ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEG 150 (626)
Q Consensus 85 ~l~~-------~~~~~i~~~L~~~l~~-------~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~ 150 (626)
..+- ...+.+.+.|+.+|.. .++.+..+++.|+..++...+......++.++.+.+++++|..|++
T Consensus 306 e~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nrea 385 (858)
T COG5215 306 EVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREA 385 (858)
T ss_pred cCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHH
Confidence 1111 1234566777777742 4678889999999999887766666779999999999999999999
Q ss_pred HHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHH--hHHHHHHHHHH
Q 006912 151 AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFL 228 (626)
Q Consensus 151 ~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~--~~~~~l~~l~~ 228 (626)
+..++|.+.+.-..... +..+++.+|.+.....|+.--++..+.+|++.+.+..+..+.+ ++.........
T Consensus 386 avmAfGSvm~gp~~~~l-------T~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~li 458 (858)
T COG5215 386 AVMAFGSVMHGPCEDCL-------TKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLI 458 (858)
T ss_pred HHHHhhhhhcCccHHHH-------HhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHh
Confidence 99999999876544322 3567888999999889888889999999999999887765543 23222333332
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhhC-------ccchhhhHHHHHHHHHhhc--cCCChHHHHHHHhHHHHhhccCCcchhH
Q 006912 229 LSNDPSAEVRKLVCAAFNLLIEVR-------PSFLEPHLRNLFEYMLQVN--KDTDDDVALEACEFWHSYFEAQLPHENL 299 (626)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~l~~~~-------~~~~~~~l~~l~~~~~~~~--~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 299 (626)
.+.| .+.+...++..+..++.+. +.++.++...++..++... .+.+...|..+++.|+++... ....+
T Consensus 459 Gl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~--~~d~V 535 (858)
T COG5215 459 GLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILI--CPDAV 535 (858)
T ss_pred hhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhh--cchhH
Confidence 2332 3455555666665555543 4456667777888777764 355667788889999888765 44445
Q ss_pred HhhhhhhHHHHhhhcccCchhhh-hhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHH
Q 006912 300 KEFLPRLVPVLLSNMIYADDDES-LVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (626)
Q Consensus 300 ~~~l~~li~~l~~~l~~~~~d~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l 378 (626)
.+.+..+.......+-.+-.-.+ .+. .+ |....-.+..--...|..+
T Consensus 536 ~~~~a~~~~~~~~kl~~~isv~~q~l~----------------------------~e----D~~~~~elqSN~~~vl~ai 583 (858)
T COG5215 536 SDILAGFYDYTSKKLDECISVLGQILA----------------------------TE----DQLLVEELQSNYIGVLEAI 583 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh----------------------------hH----HHHHHHHHHHHHHHHHHHH
Confidence 55555544444332211100000 000 00 0000001344455667777
Q ss_pred HhhcCc---chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHH
Q 006912 379 SNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCW 455 (626)
Q Consensus 379 ~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~ 455 (626)
.+..|. ++-+.++..+.+.+++.++ .....-.+.+++.++..+.+.+..|++.++|++.+.++-.+..|-..|+.
T Consensus 584 ir~~~~~ie~v~D~lm~Lf~r~les~~~--t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avg 661 (858)
T COG5215 584 IRTRRRDIEDVEDQLMELFIRILESTKP--TTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVG 661 (858)
T ss_pred HHhcCCCcccHHHHHHHHHHHHHhccCC--chhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHH
Confidence 777765 3445688888888888751 34455667889999998888999999999999999998889999999999
Q ss_pred HHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhh-
Q 006912 456 TLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY- 532 (626)
Q Consensus 456 ~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~--~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~- 532 (626)
.+|.++..+.. +...|-..++..+..+++++ +..++.+.++.++.++...|..+.+|++.++-.+.+.-+..
T Consensus 662 lvgdlantl~~-----df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p 736 (858)
T COG5215 662 LVGDLANTLGT-----DFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDP 736 (858)
T ss_pred HHHHHHHHhhh-----hHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCC
Confidence 99999988875 47888999999999999976 46788999999999999999999999999987766554322
Q ss_pred -h---------HHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHh---cCCCCCCcc-----chHHHHHHHHHH
Q 006912 533 -Q---------RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQ---QLPNSDKDL-----FPLLECFTSIAQ 594 (626)
Q Consensus 533 -~---------~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~-----~~~l~~~~~l~~ 594 (626)
+ ...+..+.+++-.+..+..+ -...++|.+...+. .+. .|++. ..+++.++.++.
T Consensus 737 ~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~n------r~~~v~Pyv~sif~~i~~ia-eDp~~se~~traalGLigDla~ 809 (858)
T COG5215 737 HSDEVYVDDYRKNAVQLVNCAYVGIGDSSKN------RVRSVLPYVISIFHKIGMIA-EDPNGSEAHTRAALGLIGDLAG 809 (858)
T ss_pred CCCceeHHHHHHHHHHHHHHHHHHhhhhhhh------hHHHhhhHHHHHHHHHHHhh-cCCccchhHHHHHHHHHHHHHH
Confidence 1 11222344444444444432 12233333333322 222 34442 377899999999
Q ss_pred Hhccc
Q 006912 595 ALGAG 599 (626)
Q Consensus 595 ~~g~~ 599 (626)
-+|++
T Consensus 810 mfpkg 814 (858)
T COG5215 810 MFPKG 814 (858)
T ss_pred hCCCc
Confidence 98874
No 23
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.8e-15 Score=148.78 Aligned_cols=400 Identities=16% Similarity=0.175 Sum_probs=279.7
Q ss_pred hCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhcc-CChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhh
Q 006912 103 GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (626)
Q Consensus 103 ~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~-~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~i 181 (626)
.++...+|.....+........+.+.-..++|...+.+++ .+..+|++.+..-+.+....... +.....+
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~---------d~~~~~~ 97 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV---------DPRPISI 97 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc---------CcchhHH
Confidence 3556778877666665555444445556777888888875 35667777777777766554432 2335677
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccc-hhhhH
Q 006912 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF-LEPHL 260 (626)
Q Consensus 182 l~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l 260 (626)
+..+++.+..++..++.+...|+..+.......-.. .+++.+.+.++...-..|..+...+..++...+.. +++
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~---~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~-- 172 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGE---YVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE-- 172 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHH---HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh--
Confidence 888999999999999999999998876543322222 33555666666555566777777777777665532 222
Q ss_pred HHHHHHHHhhccCCChHHHHH-HHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCC
Q 006912 261 RNLFEYMLQVNKDTDDDVALE-ACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDL 339 (626)
Q Consensus 261 ~~l~~~~~~~~~~~~~~v~~~-a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~ 339 (626)
..++..+.....+.....++. +.-.....+.. ......|++..++|.++....+..
T Consensus 173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~--Lg~~~EPyiv~~lp~il~~~~d~~--------------------- 229 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQGN--LGPPFEPYIVPILPSILTNFGDKI--------------------- 229 (569)
T ss_pred hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHh--cCCCCCchHHhhHHHHHHHhhccc---------------------
Confidence 235555555566655444432 22222333332 334456777788887766543221
Q ss_pred CcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHH
Q 006912 340 KPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAI 419 (626)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l 419 (626)
-.+|.+|..+...+...++..-+..++|.+...+.... |+.+.+++..+|.+
T Consensus 230 -------------------------~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~k---WrtK~aslellg~m 281 (569)
T KOG1242|consen 230 -------------------------NKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAK---WRTKMASLELLGAM 281 (569)
T ss_pred -------------------------hhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHh---hhhHHHHHHHHHHH
Confidence 14899999999999999987767677766655555557 99999999999999
Q ss_pred HccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhh------------cCCCc---------------
Q 006912 420 AEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD------------IGHQN--------------- 472 (626)
Q Consensus 420 ~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------------~~~~~--------------- 472 (626)
+...++.+.-.+++++|.+...+.|.++.||.++..++-++++...+. ++++.
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttF 361 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTF 361 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceee
Confidence 999888889999999999999999999999999999999988765431 00000
Q ss_pred ----hhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh--cccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 006912 473 ----GREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (626)
Q Consensus 473 ----~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~--~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~ 546 (626)
..+-+.-++|.+...+.+.+...+..++..+.+++.-. +..+.||++.+++.+-..+.+...+++..+..+++.
T Consensus 362 V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~ 441 (569)
T KOG1242|consen 362 VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGA 441 (569)
T ss_pred eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHH
Confidence 12334555566666666666667777888888888777 457899999999999999998878889999999999
Q ss_pred HHHHhccccCChhhhhhhhHHHHHHH
Q 006912 547 LADAVGFELNQPVYLDILMPPLIAKW 572 (626)
Q Consensus 547 i~~~~~~~~~~~~~~~~l~~~l~~~~ 572 (626)
+.+..|..- ++...|.+.+..
T Consensus 442 l~e~~g~~~-----f~d~~p~l~e~~ 462 (569)
T KOG1242|consen 442 LLERLGEVS-----FDDLIPELSETL 462 (569)
T ss_pred HHHHHHhhc-----ccccccHHHHhh
Confidence 999998763 255666665554
No 24
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.77 E-value=2e-14 Score=142.26 Aligned_cols=443 Identities=14% Similarity=0.192 Sum_probs=302.1
Q ss_pred HHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc---CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCC
Q 006912 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI---AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (626)
Q Consensus 94 i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~---~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~ 170 (626)
+.+.+-.+|.+.+..||..++.+++.+++...| +.+..++..|++.+...-.....+-+.+++.++-....+...
T Consensus 554 lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~-- 631 (1172)
T KOG0213|consen 554 LVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYAS-- 631 (1172)
T ss_pred HHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHH--
Confidence 444455566788999999999999999988644 567888888999888766556566677777777665544332
Q ss_pred CCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccc---hHHH-HhHHH-------------------------
Q 006912 171 PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP---SALF-VSMDQ------------------------- 221 (626)
Q Consensus 171 ~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~---~~~~-~~~~~------------------------- 221 (626)
....+++-.+..-++++|.++++.+++.+..++...+ .... +.++.
T Consensus 632 -----yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv 706 (1172)
T KOG0213|consen 632 -----YYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTV 706 (1172)
T ss_pred -----HhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHH
Confidence 1235667778888999999999999999998886532 1111 11111
Q ss_pred ----------HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCcc-chhhh-HHHHHHHHHhhccCCC--hHHHHHHHhHHH
Q 006912 222 ----------YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS-FLEPH-LRNLFEYMLQVNKDTD--DDVALEACEFWH 287 (626)
Q Consensus 222 ----------~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~-l~~l~~~~~~~~~~~~--~~v~~~a~~~l~ 287 (626)
++..++.-+.|..+..|+.+.++...++...+. .+... .+.++..++..++.+. +.|-. ..++
T Consensus 707 ~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml---~gfg 783 (1172)
T KOG0213|consen 707 EIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVML---LGFG 783 (1172)
T ss_pred HHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhh---hhHH
Confidence 122222234456677888888888777765542 22222 2355555555554433 33322 3345
Q ss_pred HhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccH
Q 006912 288 SYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (626)
Q Consensus 288 ~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (626)
.++.. .....+|++++++..++..+.... ..+
T Consensus 784 ~V~~~--lg~r~kpylpqi~stiL~rLnnks----------------------------------------------a~v 815 (1172)
T KOG0213|consen 784 TVVNA--LGGRVKPYLPQICSTILWRLNNKS----------------------------------------------AKV 815 (1172)
T ss_pred HHHHH--HhhccccchHHHHHHHHHHhcCCC----------------------------------------------hhH
Confidence 55443 445678999999998887765422 137
Q ss_pred HHHHHHHHHHHHhhc---Cc-chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc-cchhhhHHHHHHHHhhhc
Q 006912 368 RKCSAAALDVLSNVF---GD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLL 442 (626)
Q Consensus 368 r~~a~~~l~~l~~~~---~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~~l~~~l 442 (626)
|..|++.++.++..+ ++ ..+..+--.+.+++.... +.+--..+.++.+|....+ ..+.+-+.+++|.+.+.|
T Consensus 816 Rqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeey---pEvLgsILgAikaI~nvigm~km~pPi~dllPrltPIL 892 (1172)
T KOG0213|consen 816 RQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEY---PEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPIL 892 (1172)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCccc---HHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhh
Confidence 888999999888776 33 567777778889998887 8888888888888877653 556788899999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHH
Q 006912 443 DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIIL 522 (626)
Q Consensus 443 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~ 522 (626)
++.+..|+..++..+|+++..-++. ....-...+.=.|+..|...+..+|.+|..+++.+.+..|+ ..++
T Consensus 893 knrheKVqen~IdLvg~IadrgpE~----v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP------qdVL 962 (1172)
T KOG0213|consen 893 KNRHEKVQENCIDLVGTIADRGPEY----VSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP------QDVL 962 (1172)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCccc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH------HHHH
Confidence 9999999999999999999876654 23445666777788888887899999999999999999885 3444
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCCCCccchHHHHHHHHHHHhcccccc
Q 006912 523 QHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQ 602 (626)
Q Consensus 523 ~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~l~~~~g~~f~~ 602 (626)
..|++-++..+...+...--+|+.+++.|++ | .++|.|++.++....+-. -..+..++.+-...|+--..
T Consensus 963 atLlnnLkvqeRq~RvcTtvaIaIVaE~c~p------F--tVLPalmneYrtPe~nVQ--nGVLkalsf~Feyigemskd 1032 (1172)
T KOG0213|consen 963 ATLLNNLKVQERQNRVCTTVAIAIVAETCGP------F--TVLPALMNEYRTPEANVQ--NGVLKALSFMFEYIGEMSKD 1032 (1172)
T ss_pred HHHHhcchHHHHHhchhhhhhhhhhhhhcCc------h--hhhHHHHhhccCchhHHH--HhHHHHHHHHHHHHHHHhhh
Confidence 4445444443333444666677788888763 3 466777766653211111 14555566666666665556
Q ss_pred chHHHHHHHHHHHHH
Q 006912 603 FAQPVFQRCINIIQT 617 (626)
Q Consensus 603 ~~~~i~~~l~~~l~~ 617 (626)
|+--+.|.+-..|.+
T Consensus 1033 Yiyav~PlleDAlmD 1047 (1172)
T KOG0213|consen 1033 YIYAVTPLLEDALMD 1047 (1172)
T ss_pred HHHHhhHHHHHhhcc
Confidence 777777777666544
No 25
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=4.3e-14 Score=136.05 Aligned_cols=410 Identities=15% Similarity=0.176 Sum_probs=292.2
Q ss_pred HHHHHHHHHHHH-hc---CCC--hHHHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhh
Q 006912 32 DKSQIWQQLQQY-SQ---FPD--FNNYLAFILARA--EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG 103 (626)
Q Consensus 32 ~r~~a~~~L~~~-~~---~p~--~~~~l~~il~~~--~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~ 103 (626)
.||+|...+.+. ++ +.+ -+..++..+..+ .+...+-|.-+.+-+--.......+ +....+.+...++.++.
T Consensus 16 kRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~-~~~Y~~~iv~Pv~~cf~ 94 (675)
T KOG0212|consen 16 KRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIK-DAGYLEKIVPPVLNCFS 94 (675)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccc-cHHHHHHhhHHHHHhcc
Confidence 788888888774 22 222 344555544432 1344455553333332211111111 12245677777888889
Q ss_pred CCcHHHHHHHHHHHHHHHhhc---CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhh
Q 006912 104 AADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180 (626)
Q Consensus 104 ~~~~~vr~~~~~~l~~i~~~~---~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (626)
+.+..+|..+|..+.+|++.. ....+++++..+.+...+.+..+| +|.+.+..+++....+-.. +..+..
T Consensus 95 D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIVte~~~------tFsL~~ 167 (675)
T KOG0212|consen 95 DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIVTESAS------TFSLPE 167 (675)
T ss_pred CccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhcccccc------ccCHHH
Confidence 999999999999999998764 346779999999999988887665 5567788887776543221 245788
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---hCccchh
Q 006912 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE---VRPSFLE 257 (626)
Q Consensus 181 il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~ 257 (626)
++|.+-..+...++..|...++.+..+-...+-++..+++.+++++++.++|++.++|..+-.++..+.. ..|..+
T Consensus 168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~- 246 (675)
T KOG0212|consen 168 FIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM- 246 (675)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc-
Confidence 9998888888889999999999998887776678899999999999999999999999776666655542 344433
Q ss_pred hhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCC
Q 006912 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQ 337 (626)
Q Consensus 258 ~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~ 337 (626)
..+++++.+..-++..++.++..|+..+..+... .+..+-+++..++..+++++.++++
T Consensus 247 -d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i--~g~~~l~~~s~il~~iLpc~s~~e~------------------ 305 (675)
T KOG0212|consen 247 -DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI--PGRDLLLYLSGILTAILPCLSDTEE------------------ 305 (675)
T ss_pred -CcccchhhccccccCCcHHHHHHHHHHHHHHhcC--CCcchhhhhhhhhhhcccCCCCCcc------------------
Confidence 2356777777778888999999998877778775 4555667778888877777765432
Q ss_pred CCCcccccccCCCCCCCCCCCccccccccHHHHHHHHH----HHHHhhcCc-c-hHHhHHHHHHHhhcCCCCCChhHHHH
Q 006912 338 DLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL----DVLSNVFGD-E-ILPTLMPVIQAKLSASGDEAWKDREA 411 (626)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l----~~l~~~~~~-~-~~~~l~~~l~~~l~~~~~~~~~~r~a 411 (626)
.+++..+...- ...+...+. + -++.++..+.+++.+.. ...|.+
T Consensus 306 ---------------------------~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~---~~tri~ 355 (675)
T KOG0212|consen 306 ---------------------------MSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDR---EETRIA 355 (675)
T ss_pred ---------------------------ccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcch---HHHHHH
Confidence 02333343333 223332222 2 24588999999999988 899999
Q ss_pred HHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccC
Q 006912 412 AVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT 491 (626)
Q Consensus 412 al~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~ 491 (626)
++.++..+-...+..+..+..++++.++..+.|++..|...++..++.+|..-. ..+..+.+..++..+...
T Consensus 356 ~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~--------~~~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 356 VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN--------SPNLRKFLLSLLEMFKED 427 (675)
T ss_pred HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc--------cccHHHHHHHHHHHHhhh
Confidence 999999999999888889999999999999999999999999999988886432 224466666777777766
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 006912 492 NKRVQEAACSAFATLEEE 509 (626)
Q Consensus 492 ~~~v~~~a~~al~~l~~~ 509 (626)
...++.++.--+..+|--
T Consensus 428 ~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 428 TKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred hHHHHhhhhHHHHHHHHH
Confidence 666677777667766643
No 26
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.71 E-value=3.1e-13 Score=143.27 Aligned_cols=437 Identities=17% Similarity=0.171 Sum_probs=281.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHH
Q 006912 18 CRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (626)
Q Consensus 18 ~~~l~~~~s~d~~~~r~~a~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~ 95 (626)
.+++..+.|.|.+ .|+-+.-++..+.. +|+......+.+.++ .+.++.+|..|...+.+. .+++..+.+.
T Consensus 45 ~~vi~l~~s~~~~-~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i-------~~~~~~~~l~ 116 (526)
T PF01602_consen 45 MEVIKLISSKDLE-LKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNI-------RTPEMAEPLI 116 (526)
T ss_dssp HHHHCTCSSSSHH-HHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHH
T ss_pred HHHHHHhCCCCHH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhh-------cccchhhHHH
Confidence 3445555577777 88888888888754 677555555555433 467888998888888643 2677778888
Q ss_pred HhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHH-HHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCc
Q 006912 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLE-LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (626)
Q Consensus 96 ~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~-ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~ 174 (626)
..+.+.+.++++.||+.++.++..+.+.+ ++..+. +++.+.+.+.++++.++.+|+.++..+ +..+....
T Consensus 117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~------- 187 (526)
T PF01602_consen 117 PDVIKLLSDPSPYVRKKAALALLKIYRKD-PDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK------- 187 (526)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHC-HCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-------
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-------
Confidence 89999999999999999999999999885 444444 799999999999999999999999888 22221100
Q ss_pred cchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHH----------------------------------HHhHH
Q 006912 175 ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL----------------------------------FVSMD 220 (626)
Q Consensus 175 ~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~----------------------------------~~~~~ 220 (626)
.....++..+.+.+.++++-++..+++.+..+....+... .....
T Consensus 188 -~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~ 266 (526)
T PF01602_consen 188 -SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQ 266 (526)
T ss_dssp -THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHH
T ss_pred -hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHH
Confidence 1123333333333344444444444433333322111110 00223
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHH
Q 006912 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (626)
Q Consensus 221 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 300 (626)
.+++.+..++.++++++|..+++++..++...+..+. +.... +.....+.+..+|..+++.+..++.. +.+.
T Consensus 267 ~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~---~~~l~~~~d~~Ir~~~l~lL~~l~~~----~n~~ 338 (526)
T PF01602_consen 267 KAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLI---LFFLLYDDDPSIRKKALDLLYKLANE----SNVK 338 (526)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHH---HHHHHCSSSHHHHHHHHHHHHHH--H----HHHH
T ss_pred hhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhh---hheecCCCChhHHHHHHHHHhhcccc----cchh
Confidence 4466677777777788888888888888877643333 11111 11223467778888888888888764 1222
Q ss_pred hhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh
Q 006912 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (626)
Q Consensus 301 ~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~ 380 (626)
.+++.+...+....+ ..+|..+...+..++.
T Consensus 339 ----~Il~eL~~~l~~~~d---------------------------------------------~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 339 ----EILDELLKYLSELSD---------------------------------------------PDFRRELIKAIGDLAE 369 (526)
T ss_dssp ----HHHHHHHHHHHHC-----------------------------------------------HHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHhccc---------------------------------------------hhhhhhHHHHHHHHHh
Confidence 233333333311100 1267888888888888
Q ss_pred hcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCC-CchHHHHHHHHHHHH
Q 006912 381 VFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSR 459 (626)
Q Consensus 381 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~ 459 (626)
.++. .....++.+.+.+...+ ......+...+..+....++. -..++..+...+.+ .++.++..++|++|.
T Consensus 370 ~~~~-~~~~~v~~l~~ll~~~~---~~~~~~~~~~i~~ll~~~~~~----~~~~l~~L~~~l~~~~~~~~~~~~~wilGE 441 (526)
T PF01602_consen 370 KFPP-DAEWYVDTLLKLLEISG---DYVSNEIINVIRDLLSNNPEL----REKILKKLIELLEDISSPEALAAAIWILGE 441 (526)
T ss_dssp HHGS-SHHHHHHHHHHHHHCTG---GGCHCHHHHHHHHHHHHSTTT----HHHHHHHHHHHHTSSSSHHHHHHHHHHHHH
T ss_pred ccCc-hHHHHHHHHHHhhhhcc---ccccchHHHHHHHHhhcChhh----hHHHHHHHHHHHHHhhHHHHHHHHHhhhcc
Confidence 8854 33456677777777765 677777777777777654332 22345555555554 678899999999999
Q ss_pred HHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHh--hhhHHH
Q 006912 460 FSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-ELAPRLEIILQHLMMAFG--KYQRRN 536 (626)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~-~~~~~l~~i~~~l~~~l~--~~~~~~ 536 (626)
++....+ .. ....++..+.+.+.+.++.+|..+..++.++....+. .. .+.+++.+..... ..+.++
T Consensus 442 y~~~~~~------~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~---~~~i~~~~~~~~~~~s~~~ev 511 (526)
T PF01602_consen 442 YGELIEN------TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEV---QNEILQFLLSLATEDSSDPEV 511 (526)
T ss_dssp HCHHHTT------TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTH---HHHHHHHHHCHHHHS-SSHHH
T ss_pred cCCcccc------cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhh---HHHHHHHHHHHhccCCCCHHH
Confidence 9998753 12 5677778888888877889999999999999987653 22 2355555555555 446677
Q ss_pred HHHHHHHHHHH
Q 006912 537 LRIVYDAIGTL 547 (626)
Q Consensus 537 ~~~~~~~l~~i 547 (626)
+..+.+.+..+
T Consensus 512 r~Ra~~y~~ll 522 (526)
T PF01602_consen 512 RDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766554
No 27
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.71 E-value=2.3e-13 Score=153.99 Aligned_cols=532 Identities=14% Similarity=0.052 Sum_probs=318.3
Q ss_pred CCCCHHHHHHHHHHHHHHh-c---------CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHH
Q 006912 26 SPSSTADKSQIWQQLQQYS-Q---------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (626)
Q Consensus 26 s~d~~~~r~~a~~~L~~~~-~---------~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~ 95 (626)
++++. .+..|...|..+. . ..+.++.|..+|.. +.++.+|..|+-.|.+.... +++.+..+.
T Consensus 200 S~d~~-lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s--g~~~~VRE~AA~AL~nLAs~-----s~e~r~~Iv 271 (2102)
T PLN03200 200 SGNSD-AQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ--GNEVSVRAEAAGALEALSSQ-----SKEAKQAIA 271 (2102)
T ss_pred CCCHH-HHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc--CCChHHHHHHHHHHHHHhcC-----CHHHHHHHH
Confidence 45666 7777877665432 2 34678889998864 56779999999999766543 233333333
Q ss_pred -----HhHhhhhhCCc---------HHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccC-ChhHHhHHH--------
Q 006912 96 -----SELLPCLGAAD---------RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAM-------- 152 (626)
Q Consensus 96 -----~~L~~~l~~~~---------~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~-~~~~r~~~l-------- 152 (626)
+.|+..+..+. ..++..+..++++|+... +.+++.|.+.+.+. +..+...++
T Consensus 272 ~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~-----~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 272 DAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM-----SALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc-----hhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 45565554332 456888999999999642 44555555554433 111111111
Q ss_pred ------------------HHHHHHhhhchhcc-c----cCCCCCccc-------hhhhhHHHHHHhcCCCChHHHHHHHH
Q 006912 153 ------------------DALSKICEDIPQVL-D----SDVPGLAEC-------PINIFLPRLLQFFQSPHTSLRKLSLG 202 (626)
Q Consensus 153 ------------------~~l~~l~~~~~~~~-~----~~~~~~~~~-------~~~~il~~l~~~l~~~~~~vr~~al~ 202 (626)
..|..+++.-.... . +-...++.+ .-.+..+.++..+...+.+++..++.
T Consensus 347 l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~ 426 (2102)
T PLN03200 347 VFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR 426 (2102)
T ss_pred hcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHH
Confidence 22222222111000 0 000000000 00123344566666677899999999
Q ss_pred HHHHHHhccchHHHHhH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHHHhhccCCChHHHH
Q 006912 203 SVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVAL 280 (626)
Q Consensus 203 ~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~v~~ 280 (626)
++..++...++...... ...++.|++++..++...+..++.++..+.....+.-...+ ...++.+.+.+.+.+..++.
T Consensus 427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqe 506 (2102)
T PLN03200 427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKE 506 (2102)
T ss_pred HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 99998866433222111 13578999999988999999999999988865443222222 24667777788888899999
Q ss_pred HHHhHHHHhhccCCcchhHHhhh--hhhHHHHhhhcccCchhh---hhhhhhccCCCCCCCCCCCcccccccCCCCCCCC
Q 006912 281 EACEFWHSYFEAQLPHENLKEFL--PRLVPVLLSNMIYADDDE---SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE 355 (626)
Q Consensus 281 ~a~~~l~~l~~~~~~~~~~~~~l--~~li~~l~~~l~~~~~d~---~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (626)
.|+..+++++.+. ...+..+ ...++.++..+...+... ..|.-..-.... ..+.+++.+... .
T Consensus 507 eAawAL~NLa~~~---~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~-d~~~I~~Lv~LL--------l 574 (2102)
T PLN03200 507 DSATVLWNLCCHS---EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA-DAATISQLTALL--------L 574 (2102)
T ss_pred HHHHHHHHHhCCc---HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc-chhHHHHHHHHh--------c
Confidence 9999999998742 2223323 245666666555433221 111000000000 000111111110 0
Q ss_pred CCCccccccccHHHHHHHHHHHHHhhcCc-chH------HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchh
Q 006912 356 DDDDDIVNVWNLRKCSAAALDVLSNVFGD-EIL------PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY 428 (626)
Q Consensus 356 ~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~------~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~ 428 (626)
.++ -.....+..++..+...... +.. ...++.+.+++++++ ...++.|+.++..++.+..+...
T Consensus 575 sdd------~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs---~~ikk~Aa~iLsnL~a~~~d~~~ 645 (2102)
T PLN03200 575 GDL------PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK---EETQEKAASVLADIFSSRQDLCE 645 (2102)
T ss_pred CCC------hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCChHHHH
Confidence 000 12444556666665543332 211 246788889999988 99999999999999987654332
Q ss_pred h-hHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhH-HHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 006912 429 P-HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATL 506 (626)
Q Consensus 429 ~-~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~ll~~l~~~l~d~~~~v~~~a~~al~~l 506 (626)
. .....+|.++..+.+.+..++..++|+|+++....... ....+. ..+++.+++.+.+++..++..|+.+|.++
T Consensus 646 avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~----q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanL 721 (2102)
T PLN03200 646 SLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKEN----RKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANL 721 (2102)
T ss_pred HHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHH----HHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 2 22346888899999999999999999999999633211 111222 34789999999999999999999999999
Q ss_pred HHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhh--hhhHHHHHHHhcCCCCCCccch
Q 006912 507 EEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLD--ILMPPLIAKWQQLPNSDKDLFP 584 (626)
Q Consensus 507 ~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~~~~ 584 (626)
+........-.-...++.|..++...+.+.++.+..+|..+.......-.-+.+.. ..+.+|+..+.....+......
T Consensus 722 l~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~ 801 (2102)
T PLN03200 722 LSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSE 801 (2102)
T ss_pred HcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHH
Confidence 97652211111235578888899999999999999999988876542210001222 2445577777654222222346
Q ss_pred HHHHHHHHHHH
Q 006912 585 LLECFTSIAQA 595 (626)
Q Consensus 585 ~l~~~~~l~~~ 595 (626)
+++.++.+++.
T Consensus 802 al~~l~~l~~~ 812 (2102)
T PLN03200 802 ALEALALLART 812 (2102)
T ss_pred HHHHHHHHHhh
Confidence 88889999885
No 28
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.70 E-value=1.8e-15 Score=147.10 Aligned_cols=275 Identities=19% Similarity=0.299 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHH-hccchHHHHhHHHHHHHHHHhcC---------CCC-----HHHHHHHHHHHHHHHhhCccchhhhHH
Q 006912 197 RKLSLGSVNQFI-MLMPSALFVSMDQYLQGLFLLSN---------DPS-----AEVRKLVCAAFNLLIEVRPSFLEPHLR 261 (626)
Q Consensus 197 r~~al~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~---------~~~-----~~~~~~~~~~l~~l~~~~~~~~~~~l~ 261 (626)
-...++++.++. ..+|+.+.+++..|+..+...+. +++ +.++..+|+.+....+++.+.++++++
T Consensus 57 l~lilKiF~sL~~~DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~ 136 (370)
T PF08506_consen 57 LKLILKIFYSLNCQDLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLP 136 (370)
T ss_dssp HHHHHHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHccCcCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777776 35788888889888887766432 111 367888999999999999999999999
Q ss_pred HHHHHHHhhccC-----CChHHHHHHHhHHHHhhccCCcchh--HHhhhhhhHHH-HhhhcccCchhhhhhhhhccCCCC
Q 006912 262 NLFEYMLQVNKD-----TDDDVALEACEFWHSYFEAQLPHEN--LKEFLPRLVPV-LLSNMIYADDDESLVEAEEDESLP 333 (626)
Q Consensus 262 ~l~~~~~~~~~~-----~~~~v~~~a~~~l~~l~~~~~~~~~--~~~~l~~li~~-l~~~l~~~~~d~~~~~~~~~e~~~ 333 (626)
.++..+++.+.. ..+.+...+++||.++++....... .++++.+++.. +++.|+.+++|+|.|++||.|
T Consensus 137 ~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~E--- 213 (370)
T PF08506_consen 137 TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEE--- 213 (370)
T ss_dssp HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHH---
T ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHH---
Confidence 999887776432 3466778899999998876322212 26788998885 579999999999999998876
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhc----CCCCCChhHH
Q 006912 334 DRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS----ASGDEAWKDR 409 (626)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~----~~~~~~~~~r 409 (626)
|+|..+ |. .+..+.|++|...+..+++..+..+.+.+..++...++ ++ ..+|+.+
T Consensus 214 ----YIrrd~-----------e~-----sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~-~~~w~~K 272 (370)
T PF08506_consen 214 ----YIRRDL-----------EG-----SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNP-SNNWRSK 272 (370)
T ss_dssp ----HHHHHS-----------CS-----S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TT-HHHH
T ss_pred ----HHHhhc-----------cc-----cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCC-cccHHHH
Confidence 444211 11 11237899999999999999988777777777777776 33 3459999
Q ss_pred HHHHHHHHHHHccCcc------chhh--hHHHH-HHHHhhhcC---CCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhH
Q 006912 410 EAAVLALGAIAEGCIK------GLYP--HLSEI-VAFLIPLLD---DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF 477 (626)
Q Consensus 410 ~aal~~l~~l~~~~~~------~~~~--~l~~l-~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 477 (626)
.+|+..++.++..... ...+ .+.+. ...+++.|. +.+|.+|..|++.+..+-..++ ++.+
T Consensus 273 D~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~--------~~~l 344 (370)
T PF08506_consen 273 DGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP--------KEQL 344 (370)
T ss_dssp HHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS---------HHHH
T ss_pred HHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC--------HHHH
Confidence 9999999999886621 1111 11221 223333333 6789999999999988877654 5678
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHH
Q 006912 478 EKVLMGLLKRILDTNKRVQEAACSAF 503 (626)
Q Consensus 478 ~~ll~~l~~~l~d~~~~v~~~a~~al 503 (626)
..++|.++..+.+++..|+..|+.|+
T Consensus 345 ~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 345 LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 99999999999999999999999875
No 29
>PTZ00429 beta-adaptin; Provisional
Probab=99.70 E-value=2.6e-12 Score=135.41 Aligned_cols=408 Identities=14% Similarity=0.126 Sum_probs=265.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHh
Q 006912 20 LLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSE 97 (626)
Q Consensus 20 ~l~~~~s~d~~~~r~~a~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~ 97 (626)
++..+.++|.+ .|+-..-+|..+.+ +|+.....++-+.++ .+.+|.+|-.|...+.+. ..++..+.+...
T Consensus 73 Vvk~~~S~d~e-lKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I-------r~~~i~e~l~~~ 144 (746)
T PTZ00429 73 VVKLAPSTDLE-LKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI-------RVSSVLEYTLEP 144 (746)
T ss_pred HHHHhCCCCHH-HHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC-------CcHHHHHHHHHH
Confidence 33444566666 77777777777654 676544444444332 356777777776655421 345666778888
Q ss_pred HhhhhhCCcHHHHHHHHHHHHHHHhhcCcCc-hHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhcc----------
Q 006912 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGIAG-WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL---------- 166 (626)
Q Consensus 98 L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~-~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~---------- 166 (626)
+.+++.+.++.||+.++-++..+.+.++.-. -.++++.+.+++.+.++.+...|+.+|..+.+..+..+
T Consensus 145 lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~L 224 (746)
T PTZ00429 145 LRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRL 224 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence 8889999999999999999999988764321 13567788888999999999999999988876532110
Q ss_pred ---ccCCCCC--------c-------cchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHh-HHHHHHHHH
Q 006912 167 ---DSDVPGL--------A-------ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLF 227 (626)
Q Consensus 167 ---~~~~~~~--------~-------~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~-~~~~l~~l~ 227 (626)
.++...+ + +.....++..+...+++.++.|..+|++++..+....+...... +..+-+.++
T Consensus 225 l~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv 304 (746)
T PTZ00429 225 VYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALL 304 (746)
T ss_pred HHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHH
Confidence 0000000 0 12234566777777888889999999999988876543333222 222334455
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhH
Q 006912 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLV 307 (626)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li 307 (626)
.+ ...+++++..+++.+..++..+|..|.+++..++ ....|.. .++...++.+..++..... ..++
T Consensus 305 ~L-~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff----~~~~Dp~-yIK~~KLeIL~~Lane~Nv--------~~IL 370 (746)
T PTZ00429 305 TL-SRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFY----VRYSDPP-FVKLEKLRLLLKLVTPSVA--------PEIL 370 (746)
T ss_pred Hh-hCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhh----cccCCcH-HHHHHHHHHHHHHcCcccH--------HHHH
Confidence 55 3457889999999999999999988877654332 2334444 5899999999999876322 2222
Q ss_pred HHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchH
Q 006912 308 PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL 387 (626)
Q Consensus 308 ~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 387 (626)
..+..+....+ ..+++.+..+++.++..++. ..
T Consensus 371 ~EL~eYa~d~D----------------------------------------------~ef~r~aIrAIg~lA~k~~~-~a 403 (746)
T PTZ00429 371 KELAEYASGVD----------------------------------------------MVFVVEVVRAIASLAIKVDS-VA 403 (746)
T ss_pred HHHHHHhhcCC----------------------------------------------HHHHHHHHHHHHHHHHhChH-HH
Confidence 33322221100 13678899999999877754 45
Q ss_pred HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhc---CCCchHHHHHHHHHHHHHHHHH
Q 006912 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL---DDKFPLIRSISCWTLSRFSKFI 464 (626)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~ 464 (626)
..++..+.+++.+.. ..+. .++..+..+....++. + +++.+...+ .=.++..|.+.+|.+|.+++.+
T Consensus 404 ~~cV~~Ll~ll~~~~---~~v~-e~i~vik~IlrkyP~~---~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I 473 (746)
T PTZ00429 404 PDCANLLLQIVDRRP---ELLP-QVVTAAKDIVRKYPEL---L---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI 473 (746)
T ss_pred HHHHHHHHHHhcCCc---hhHH-HHHHHHHHHHHHCccH---H---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH
Confidence 567777777776543 2222 4566666665554432 1 344444433 1257889999999999999876
Q ss_pred hhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccc
Q 006912 465 VQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAP 516 (626)
Q Consensus 465 ~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~ 516 (626)
.. ...++..+++.+.+.++.||...+.+..++.-..++...+
T Consensus 474 ~~----------a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~ 515 (746)
T PTZ00429 474 EN----------GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEP 515 (746)
T ss_pred hh----------HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 43 2345555567777778999999999999998776544433
No 30
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.2e-13 Score=132.98 Aligned_cols=394 Identities=13% Similarity=0.115 Sum_probs=299.6
Q ss_pred hHhhhhhCCcHHHHHHHHHHHHHHHhhcC-cCch---HHHHHHHH-HHhccCChhHHhHHHHHHHHHhhhchhccccCCC
Q 006912 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGG-IAGW---LELLQALV-TCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (626)
Q Consensus 97 ~L~~~l~~~~~~vr~~~~~~l~~i~~~~~-~~~~---~~ll~~l~-~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~ 171 (626)
.+...|++.-..=|++++.-+-.+++... .+.. ..++..+. ....+++.+.|.+++..+....-..+..-.
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~---- 79 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDA---- 79 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccH----
Confidence 44556777777779999988888887642 2332 44455333 344567777888999998888766654322
Q ss_pred CCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 006912 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (626)
Q Consensus 172 ~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (626)
.+...++++++.++.|++..+|..|++.++.++.........+++.+...++++..|.+..+| .+.+.+..++..
T Consensus 80 ----~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikd 154 (675)
T KOG0212|consen 80 ----GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKD 154 (675)
T ss_pred ----HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHH
Confidence 357889999999999999999999999999999888777778888999999999988887775 455666666643
Q ss_pred Cc--cchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhcc
Q 006912 252 RP--SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEED 329 (626)
Q Consensus 252 ~~--~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~ 329 (626)
-. ..-.-.++.+++.+-..+...++.+|...++.+..+-..+ .-.+-.|++.+++.+++.+.+..+
T Consensus 155 IVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P--~~~m~~yl~~~ldGLf~~LsD~s~---------- 222 (675)
T KOG0212|consen 155 IVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP--DLEMISYLPSLLDGLFNMLSDSSD---------- 222 (675)
T ss_pred hccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC--cHHHHhcchHHHHHHHHHhcCCcH----------
Confidence 21 1113467889998888888888889998888666665442 233446788888888887764332
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcC---cc-hHHhHHHHHHHhhcCCCCCC
Q 006912 330 ESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG---DE-ILPTLMPVIQAKLSASGDEA 405 (626)
Q Consensus 330 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~---~~-~~~~l~~~l~~~l~~~~~~~ 405 (626)
.+|..+..+++.+..... .. -.+..++.+...+++++
T Consensus 223 ------------------------------------eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~--- 263 (675)
T KOG0212|consen 223 ------------------------------------EVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSE--- 263 (675)
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCc---
Confidence 266666667766655442 11 24567777777888888
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCch-HHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP-LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l 484 (626)
+..+..|+.++..+..-.+..+-+++..++..+++++.|+.+ .++..+...-+.+...+........ --+..++..+
T Consensus 264 ~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~--id~~~ii~vl 341 (675)
T KOG0212|consen 264 PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE--IDYGSIIEVL 341 (675)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc--cchHHHHHHH
Confidence 999999999999999988888889999999999999998877 4777777776677666654311111 2245889999
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Q 006912 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (626)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~ 552 (626)
.+.+.++....|.++...+..+....+.++..|...+.+.|+..+.+.++++...+++.++.++..-.
T Consensus 342 ~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 342 TKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 99999989999999999999999999999999999999999999999999999999999998886643
No 31
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.69 E-value=9.7e-13 Score=127.98 Aligned_cols=566 Identities=14% Similarity=0.130 Sum_probs=325.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--CChH-HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH------hhcc-
Q 006912 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQF--PDFN-NYLAFILARAEGKSVEIRQAAGLLLKNNLRT------AYKS- 85 (626)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~--p~~~-~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~------~~~~- 85 (626)
.+..+|-...+..+. .|+.+...|..=..+ |..+ ..++.++.+ .+.++.-|+.-.-.+-+.+-. .|-+
T Consensus 169 ~v~rllLkvKNG~~~-mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~-r~LeDqerhl~vk~idr~Ly~lddl~~pyvhk 246 (975)
T COG5181 169 DVYRLLLKVKNGGKR-MRMEGLRILTDKAVNFGAAAVFNKVLPMLMS-RELEDQERHLVVKLIDRLLYGLDDLKVPYVHK 246 (975)
T ss_pred hHHHHHhhcccCCch-hhHHHHHHHHHHhhcccHHHHHHHHHHHHHh-hhhhhhhhHhHHHHHHHHHHhcccccccceee
Confidence 345566666678888 899998888764332 3322 223334432 267777777776666555522 1111
Q ss_pred ---------CChhHH-----HHHHHhHhh--hh-----------hCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHH
Q 006912 86 ---------MSPSNQ-----QYIKSELLP--CL-----------GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVT 138 (626)
Q Consensus 86 ---------l~~~~~-----~~i~~~L~~--~l-----------~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~ 138 (626)
++++-+ .+|...|.. .| .+.++.||+..+.+++.++... ..++++|++..
T Consensus 247 ILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al---gv~~llpfl~a 323 (975)
T COG5181 247 ILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL---GVEELLPFLEA 323 (975)
T ss_pred EEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh---CcHHHHHHHHH
Confidence 233222 122323322 11 2468999999999999999764 35789999999
Q ss_pred HhccC-ChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHH
Q 006912 139 CLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV 217 (626)
Q Consensus 139 ~l~~~-~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~ 217 (626)
.+.|. +|..|+.++.+...++...+.... .++..++..+..++.|.+..||.-+..++..+++...+.-.+
T Consensus 324 ~c~SrkSw~aRhTgiri~qqI~~llG~s~l--------~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie 395 (975)
T COG5181 324 LCGSRKSWEARHTGIRIAQQICELLGRSRL--------SHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIE 395 (975)
T ss_pred HhcCccchhhhchhhHHHHHHHHHhCccHH--------hhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchH
Confidence 99885 899999999999999998876544 345777778888899989899999999998888876554455
Q ss_pred hHHHHHHHHHHhcCCCCHHHHH-----------------------HHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCC
Q 006912 218 SMDQYLQGLFLLSNDPSAEVRK-----------------------LVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT 274 (626)
Q Consensus 218 ~~~~~l~~l~~~~~~~~~~~~~-----------------------~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~ 274 (626)
.++.++..|+.-.+........ ++.+.+....+...+..++.+..+...+-..-.+.
T Consensus 396 ~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~t 475 (975)
T COG5181 396 QFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDT 475 (975)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCC
Confidence 5666666666544322111111 12222222222222222221111111111000111
Q ss_pred ChHHHHHH-H----hHHHH-hhc-----------------cCCc--------------chhHHhhhhhhHHHHhhhcccC
Q 006912 275 DDDVALEA-C----EFWHS-YFE-----------------AQLP--------------HENLKEFLPRLVPVLLSNMIYA 317 (626)
Q Consensus 275 ~~~v~~~a-~----~~l~~-l~~-----------------~~~~--------------~~~~~~~l~~li~~l~~~l~~~ 317 (626)
-+..|... . .||.. .+. .... .+-.+.+...++.-.+..+.-.
T Consensus 476 p~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~ 555 (975)
T COG5181 476 PWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRL 555 (975)
T ss_pred HHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccc
Confidence 11111110 0 01111 111 0000 0001111112222222222211
Q ss_pred c---hhhh-hhhhhccCCCCC--CCCCCCcccccccCC-CCCCCCC------C--CccccccccHHHHHHHHHHHHHhhc
Q 006912 318 D---DDES-LVEAEEDESLPD--RDQDLKPRFHSSRLH-GSENPED------D--DDDIVNVWNLRKCSAAALDVLSNVF 382 (626)
Q Consensus 318 ~---~d~~-~~~~~~~e~~~~--~~~~~~~~~~~~~~~-~~~~~~~------~--~~~~~~~~~~r~~a~~~l~~l~~~~ 382 (626)
+ ..++ .++.--...++. ...-+.|.|.....+ +.-.... . .--....-.+|.-|++..+.++..+
T Consensus 556 ~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vl 635 (975)
T COG5181 556 GFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVL 635 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 1 1111 111100000000 001111111000000 0000000 0 0000111247888888888877765
Q ss_pred ---Cc-chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccC-ccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHH
Q 006912 383 ---GD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (626)
Q Consensus 383 ---~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~-~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l 457 (626)
|+ ..+..+-.++.+.+.... +++--..+.++.++.... ...+.|-..+++|.+.+.|.+.+..|....+..+
T Consensus 636 k~c~e~~~l~klg~iLyE~lge~y---pEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lv 712 (975)
T COG5181 636 KACGETKELAKLGNILYENLGEDY---PEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALV 712 (975)
T ss_pred HhcchHHHHHHHhHHHHHhcCccc---HHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHH
Confidence 44 667777788888888877 888877788877776654 3566788899999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHH
Q 006912 458 SRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNL 537 (626)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~ 537 (626)
|.++..-++. ....-...+.-.++..+.+-+..+|..|..+++.+.+..|+ ..++..|++-++..+...+
T Consensus 713 g~I~~~~pey----i~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~R 782 (975)
T COG5181 713 GTICMNSPEY----IGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQERQQR 782 (975)
T ss_pred HHHHhcCccc----CCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHHhh
Confidence 9999876654 34455667777888888888999999999999999998875 3455555555544333344
Q ss_pred HHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCCCCcc-chHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Q 006912 538 RIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQ 616 (626)
Q Consensus 538 ~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~~l~ 616 (626)
...--+|+.+++.+|+ | .++|.+++-++.. .... ...+..++.+-...|..-..|+-.+.|.+-..|.
T Consensus 783 vctsvaI~iVae~cgp------f--sVlP~lm~dY~TP---e~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAlt 851 (975)
T COG5181 783 VCTSVAISIVAEYCGP------F--SVLPTLMSDYETP---EANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALT 851 (975)
T ss_pred hhhhhhhhhhHhhcCc------h--hhHHHHHhcccCc---hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 4666778888888873 3 4667777665532 1112 2556777777777787777788888888877766
Q ss_pred HH
Q 006912 617 TQ 618 (626)
Q Consensus 617 ~~ 618 (626)
+.
T Consensus 852 Dr 853 (975)
T COG5181 852 DR 853 (975)
T ss_pred cc
Confidence 54
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.68 E-value=8e-13 Score=140.12 Aligned_cols=494 Identities=15% Similarity=0.138 Sum_probs=323.0
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHH
Q 006912 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (626)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~-~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~ 91 (626)
.-.++...++... .+.. .|..+-+.|-.+.. ..+.-....+++..-.+++...|..+-+++... ..-+++..
T Consensus 5 ~~~el~~~~~~~~-~~~~-~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~-----~~~~~~~~ 77 (526)
T PF01602_consen 5 ISQELAKILNSFK-IDIS-KKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLY-----LHEDPELL 77 (526)
T ss_dssp HHHHHHHHHHCSS-THHH-HHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHH-----TTTSHHHH
T ss_pred HHHHHHHHHhcCC-CCHH-HHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHH-----hhcchhHH
Confidence 3456667777654 4655 77777777766532 222222333333322278899999998888533 23456666
Q ss_pred HHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCC
Q 006912 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (626)
Q Consensus 92 ~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~ 171 (626)
.-+.+.+.+-+.++++.+|..+.++++.+. .+...+.+++.+.+++.++++.+|..|+.++..+.+..++..
T Consensus 78 ~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~----- 149 (526)
T PF01602_consen 78 ILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV----- 149 (526)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH-----
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH-----
Confidence 677788888888999999999999988887 355678899999999999999999999999999999877643
Q ss_pred CCccchhhh-hHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 006912 172 GLAECPINI-FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (626)
Q Consensus 172 ~~~~~~~~~-il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~ 250 (626)
.. +++.+.+.+.|+++.|+.+|+.++..+ ...++.....++.+.+.+.+.+.++++..+..+++.+..+..
T Consensus 150 -------~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 150 -------EDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp -------HGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred -------HHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 33 789999999999999999999999988 433333224455567777777788899888888888887766
Q ss_pred hCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccC
Q 006912 251 VRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDE 330 (626)
Q Consensus 251 ~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e 330 (626)
..+..... ..+++.+...+++.+..|...++.++..+.... . .+..+++.+...+..++
T Consensus 222 ~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~---~----~~~~~~~~L~~lL~s~~------------ 280 (526)
T PF01602_consen 222 MEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP---E----LLQKAINPLIKLLSSSD------------ 280 (526)
T ss_dssp SSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH---H----HHHHHHHHHHHHHTSSS------------
T ss_pred CChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcch---H----HHHhhHHHHHHHhhccc------------
Confidence 55544311 345556666666777888999998888776541 1 44555566655554221
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHH
Q 006912 331 SLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDRE 410 (626)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~ 410 (626)
.++|..+.+++..++...+..+. .....+.....+++ ..+|.
T Consensus 281 ----------------------------------~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d---~~Ir~ 322 (526)
T PF01602_consen 281 ----------------------------------PNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLYDDD---PSIRK 322 (526)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHCSSS---HHHHH
T ss_pred ----------------------------------chhehhHHHHHHHhhcccchhhh-hhhhhhheecCCCC---hhHHH
Confidence 24788888888888777643332 22222223333666 88999
Q ss_pred HHHHHHHHHHccCccchhhhHHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhc
Q 006912 411 AAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (626)
Q Consensus 411 aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~ 489 (626)
.++..+..++.. .....+++.+...+.+ +++.+|..++..++.++...++ .....+..+++.+.
T Consensus 323 ~~l~lL~~l~~~------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~---------~~~~~v~~l~~ll~ 387 (526)
T PF01602_consen 323 KALDLLYKLANE------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP---------DAEWYVDTLLKLLE 387 (526)
T ss_dssp HHHHHHHHH--H------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS---------SHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc---------hHHHHHHHHHHhhh
Confidence 999999988872 3445567777776743 4777999999999999987643 34556677777777
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHH
Q 006912 490 DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ-RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPL 568 (626)
Q Consensus 490 d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~-~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l 568 (626)
.....+...+...+..++...++. -..++..+...+.+.. ...+..++-++|......+.. .....++..+
T Consensus 388 ~~~~~~~~~~~~~i~~ll~~~~~~----~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~----~~~~~~~~~l 459 (526)
T PF01602_consen 388 ISGDYVSNEIINVIRDLLSNNPEL----REKILKKLIELLEDISSPEALAAAIWILGEYGELIENT----ESAPDILRSL 459 (526)
T ss_dssp CTGGGCHCHHHHHHHHHHHHSTTT----HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTT----THHHHHHHHH
T ss_pred hccccccchHHHHHHHHhhcChhh----hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCccccc----ccHHHHHHHH
Confidence 666777888888888888765432 2344666666666533 334445555666555555430 1345555666
Q ss_pred HHHHhcCCCCCCc-cchHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Q 006912 569 IAKWQQLPNSDKD-LFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQ 616 (626)
Q Consensus 569 ~~~~~~~~~~~~~-~~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~~l~ 616 (626)
.+.+... +.. ...++.++..+....+.. ...+.+++.+.+..+
T Consensus 460 ~~~~~~~---~~~vk~~ilt~~~Kl~~~~~~~--~~~~~i~~~~~~~~~ 503 (526)
T PF01602_consen 460 IENFIEE---SPEVKLQILTALAKLFKRNPEN--EVQNEILQFLLSLAT 503 (526)
T ss_dssp HHHHTTS---HHHHHHHHHHHHHHHHHHSCST--THHHHHHHHHHCHHH
T ss_pred HHhhccc---cHHHHHHHHHHHHHHHhhCCch--hhHHHHHHHHHHHhc
Confidence 6665432 222 235555555555443321 112355555555554
No 33
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=2.9e-13 Score=144.40 Aligned_cols=378 Identities=16% Similarity=0.174 Sum_probs=269.6
Q ss_pred cHHHHHHHHHHHHHHHhhc---CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhH
Q 006912 106 DRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (626)
Q Consensus 106 ~~~vr~~~~~~l~~i~~~~---~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il 182 (626)
.+.=|+.+|.-++.|++.. -....+.++|.|.+.=-|++..++.+...+.+.++.+-...++ .+.++|+
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd--------~y~neIl 1041 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVD--------EYLNEIL 1041 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHH--------HHHHHHH
Confidence 4445666777777777653 2356788889998888899999998888888888877665543 5578999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhccc-hHHHHhHHHHHHHHHHhcCCCCHHHHHHH---HHHHHHHHhhC-----c
Q 006912 183 PRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSNDPSAEVRKLV---CAAFNLLIEVR-----P 253 (626)
Q Consensus 183 ~~l~~~l~~~~~~vr~~al~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~---~~~l~~l~~~~-----~ 253 (626)
..++..+.+..++||.+++-++..+++.-| +.+.+.++.++..+++...|-.+.||+.+ +.++.+++-.. +
T Consensus 1042 ~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~ 1121 (1702)
T KOG0915|consen 1042 DELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNG 1121 (1702)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Confidence 999999999999999999999999998866 45677888999999999888888888765 44555554322 2
Q ss_pred cchhhhHHHHHHHHHhh-ccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCC
Q 006912 254 SFLEPHLRNLFEYMLQV-NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESL 332 (626)
Q Consensus 254 ~~~~~~l~~l~~~~~~~-~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~ 332 (626)
..-+..+..++|+++.- +-+.-.++|..++..+..+++. ....++||+..++|.++.....-++.+-++-..
T Consensus 1122 ~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Ks--sg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~----- 1194 (1702)
T KOG0915|consen 1122 AKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKS--SGKELKPHFPKLIPLLLNAYSELEPQVLNYLSL----- 1194 (1702)
T ss_pred ccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHh--chhhhcchhhHHHHHHHHHccccchHHHHHHHH-----
Confidence 22334667888888743 3366678999999999999987 677899999999999998877665543222000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHH------HHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCCh
Q 006912 333 PDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS------AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAW 406 (626)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a------~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 406 (626)
+. .+.+.+--| +.|..+ .++++.........++..++|.+.+.+..+-+ -
T Consensus 1195 --------------r~---~~~e~ealD-----t~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVg--l 1250 (1702)
T KOG0915|consen 1195 --------------RL---INIETEALD-----TLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVG--L 1250 (1702)
T ss_pred --------------hh---hhhHHHHHH-----HHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCC--C
Confidence 00 000000000 233333 34555555566667788889998888877532 5
Q ss_pred hHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHH
Q 006912 407 KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLK 486 (626)
Q Consensus 407 ~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~ 486 (626)
..|.++...+..++..++.++.|+-..++..++..++|.++.+|.+...+.|.+.+.-.+. ....++..++..++
T Consensus 1251 ~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~d----q~qKLie~~l~~~l- 1325 (1702)
T KOG0915|consen 1251 GTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPD----QMQKLIETLLADLL- 1325 (1702)
T ss_pred CcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChH----HHHHHHHHHHHHHh-
Confidence 5677877888888888888889999999999999999999999999999999998865431 22333333333333
Q ss_pred HhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHh
Q 006912 487 RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFG 530 (626)
Q Consensus 487 ~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~ 530 (626)
.+.+ ..+..+|..+.+|.....+.+..|...++|...-...
T Consensus 1326 --~k~e-s~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ 1366 (1702)
T KOG0915|consen 1326 --GKDE-SLKSISCATISNIANYSQEMLKNYASAILPLIFLAMH 1366 (1702)
T ss_pred --ccCC-CccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHh
Confidence 3222 2225566677767777777888899999987654433
No 34
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=8.6e-14 Score=136.36 Aligned_cols=359 Identities=17% Similarity=0.146 Sum_probs=257.9
Q ss_pred HHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc-----CchHHHHHHHHHHhc-cCChhHHhHHHHHHHHHhhhchhcccc
Q 006912 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-----AGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDS 168 (626)
Q Consensus 95 ~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~-----~~~~~ll~~l~~~l~-~~~~~~r~~~l~~l~~l~~~~~~~~~~ 168 (626)
...++..+.+.+...+..+...+..+...+.. ..+.+++|.+.+++. +.++.++..+..+|..++....+...-
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 34555556666666677777777777765421 134567899999997 556889999999999998876665332
Q ss_pred CCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHH--HHHHHHHHhcCCCCH-HHHHHHHHHH
Q 006912 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDPSA-EVRKLVCAAF 245 (626)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~-~~~~~~~~~l 245 (626)
.+ -...+|.|.+++.+++..|+..|+.+|+.++...| .+.+.+- ..++.|..++..+.. .....+..+|
T Consensus 148 vv-------~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~-~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~L 219 (514)
T KOG0166|consen 148 VV-------DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSP-DCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTL 219 (514)
T ss_pred cc-------cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCCh-HHHHHHHhhcchHHHHHHhccccchHHHHHHHHHH
Confidence 11 25678899999999999999999999999986643 3333322 456777777765554 5677889999
Q ss_pred HHHHhhC-ccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhh
Q 006912 246 NLLIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (626)
Q Consensus 246 ~~l~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~ 324 (626)
..++... |..-...+..+++.+..++.+.|.+|...|+..+..++... .+.+.
T Consensus 220 sNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~--ne~iq------------------------ 273 (514)
T KOG0166|consen 220 SNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS--NEKIQ------------------------ 273 (514)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC--hHHHH------------------------
Confidence 9999765 44333566788999999999999999998888888776641 11000
Q ss_pred hhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCC
Q 006912 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDE 404 (626)
Q Consensus 325 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~ 404 (626)
. . +-..++|.+..++.+++
T Consensus 274 ----------------------------------------------------~---v----i~~gvv~~LV~lL~~~~-- 292 (514)
T KOG0166|consen 274 ----------------------------------------------------M---V----IDAGVVPRLVDLLGHSS-- 292 (514)
T ss_pred ----------------------------------------------------H---H----HHccchHHHHHHHcCCC--
Confidence 0 0 00135677888888988
Q ss_pred ChhHHHHHHHHHHHHHccCccchhhhH-HHHHHHHhhhcC-CCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHH
Q 006912 405 AWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (626)
Q Consensus 405 ~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~ 482 (626)
..++-.|++++|.++.+........+ ...+|.+...+. ++...+|..|||++++++..-+.. ...-.-..++|
T Consensus 293 -~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~q----iqaVida~l~p 367 (514)
T KOG0166|consen 293 -PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQ----IQAVIDANLIP 367 (514)
T ss_pred -cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHH----HHHHHHcccHH
Confidence 89999999999998887643322222 236788888887 566779999999999998644332 12333457899
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Q 006912 483 GLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (626)
Q Consensus 483 ~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~ 553 (626)
.|+..++.....+|..|++|+++++..+.+.-..|+ ..+++.+..++.-.+.+....+++++..+......
T Consensus 368 ~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 368 VLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred HHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999988899999999999999887654433432 24666777777555666677899999998776543
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.64 E-value=1.4e-10 Score=122.48 Aligned_cols=247 Identities=11% Similarity=0.060 Sum_probs=174.9
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHh-cCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhh
Q 006912 22 EQQISPSSTADKSQIWQQLQQYS-QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLP 100 (626)
Q Consensus 22 ~~~~s~d~~~~r~~a~~~L~~~~-~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~ 100 (626)
+.+.|.+.. .|+.|.+.+..+. ...+....+.+++..-.+.+.++|++.-+++.+. ....++..--..+.+.+
T Consensus 39 ~~L~s~~~~-~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~y-----a~~~pelalLaINtl~K 112 (746)
T PTZ00429 39 NDLNGTDSY-RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLST-----ARLQPEKALLAVNTFLQ 112 (746)
T ss_pred HHHHCCCHH-HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----cccChHHHHHHHHHHHH
Confidence 333466766 7778887776643 3334433444444322377899999999999754 34556666667788888
Q ss_pred hhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhh
Q 006912 101 CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180 (626)
Q Consensus 101 ~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (626)
-+.++++.+|-.+.+.++.|- .+...+.+++.+.+++.+.++-||..|+.++.++....++... -..
T Consensus 113 Dl~d~Np~IRaLALRtLs~Ir---~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~----------~~~ 179 (746)
T PTZ00429 113 DTTNSSPVVRALAVRTMMCIR---VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY----------QQD 179 (746)
T ss_pred HcCCCCHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc----------ccc
Confidence 888999999998777666554 3566778889999999999999999999999999887775432 145
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhH
Q 006912 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL 260 (626)
Q Consensus 181 il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 260 (626)
+++.+...+.|+++.|...|+.+|..+.+..|..+ ......+..++..+.+-++-.+...++.|.... |.. ....
T Consensus 180 ~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~---P~~-~~e~ 254 (746)
T PTZ00429 180 FKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR---PSD-KESA 254 (746)
T ss_pred hHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCC-cHHH
Confidence 67778888999999999999999999987666543 233344566666666556656666666664422 211 1223
Q ss_pred HHHHHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 261 RNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 261 ~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
..++..+...+++.+..|...|+.++..+...
T Consensus 255 ~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 255 ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 46777777778888889999999988887653
No 36
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=5.4e-12 Score=134.97 Aligned_cols=486 Identities=15% Similarity=0.175 Sum_probs=331.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChh--HHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHH
Q 006912 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPS--NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTC 139 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~~~~~~l~~~--~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~ 139 (626)
+.+|..|+++++-|--.++..- +.++- ....|...+...|.|.++-++..+++-++.+-.....+.-.++...|...
T Consensus 829 s~nph~R~A~~VWLLs~vq~l~-~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~t 907 (1702)
T KOG0915|consen 829 SPNPHERQAGCVWLLSLVQYLG-QQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVNT 907 (1702)
T ss_pred CCCHHHHHHHHHHHHHHHHHhc-cCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHHH
Confidence 7889999999998877765432 22221 22456677888889999999888888877766554444556777777766
Q ss_pred hccCCh---------hHHhH----------HHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCC-ChHHHHH
Q 006912 140 LDSNDI---------NHMEG----------AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKL 199 (626)
Q Consensus 140 l~~~~~---------~~r~~----------~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vr~~ 199 (626)
+..+.- .+-+. .+..-..+|....+ -..++++=.++++.+++ .+.-|..
T Consensus 908 l~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd-----------l~qPdLVYKFM~LAnh~A~wnSk~G 976 (1702)
T KOG0915|consen 908 LTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD-----------LGQPDLVYKFMQLANHNATWNSKKG 976 (1702)
T ss_pred HhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh-----------cCChHHHHHHHHHhhhhchhhcccc
Confidence 643211 00000 11111111111111 11244444566666664 4566777
Q ss_pred HHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHH
Q 006912 200 SLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVA 279 (626)
Q Consensus 200 al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~ 279 (626)
|.-.|+.+.....+.+.+++..++|.|++.--||+..++......++.++......+..|+.+|+.-++..+.+.++.||
T Consensus 977 aAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVR 1056 (1702)
T KOG0915|consen 977 AAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVR 1056 (1702)
T ss_pred hhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 77788888877778888999999999999988999999999999999999998899999999999999999999999999
Q ss_pred HHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCc
Q 006912 280 LEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (626)
Q Consensus 280 ~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (626)
..++-.+..+.+.. ....+.++++.+-..++..| ||+ +
T Consensus 1057 easclAL~dLl~g~-~~~~~~e~lpelw~~~fRvm----DDI------------------K------------------- 1094 (1702)
T KOG0915|consen 1057 EASCLALADLLQGR-PFDQVKEKLPELWEAAFRVM----DDI------------------K------------------- 1094 (1702)
T ss_pred HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHH----HHH------------------H-------------------
Confidence 99999999988763 33445555555544444332 111 0
Q ss_pred cccccccHHHHHHHHHHHHHhhc-----------CcchHHhHHHHHH-HhhcCCCCCChhHHHHHHHHHHHHHccCccch
Q 006912 360 DIVNVWNLRKCSAAALDVLSNVF-----------GDEILPTLMPVIQ-AKLSASGDEAWKDREAAVLALGAIAEGCIKGL 427 (626)
Q Consensus 360 ~~~~~~~~r~~a~~~l~~l~~~~-----------~~~~~~~l~~~l~-~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~ 427 (626)
-++|.+|..+...+++.+ |.+++..++|++. +.+-+.- ..+|..++..+..++...++.+
T Consensus 1095 -----EsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v---~evr~~si~tl~dl~Kssg~~l 1166 (1702)
T KOG0915|consen 1095 -----ESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKV---NEVRRFSIGTLMDLAKSSGKEL 1166 (1702)
T ss_pred -----HHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccch---HHHHHHHHHHHHHHHHhchhhh
Confidence 047888887777776654 2366778888874 2333444 8899999999999999999999
Q ss_pred hhhHHHHHHHHhhhcCCCchHH-HHHHHHHHHHHHHHHhhhcC----------------CCchhhhHHHHHHHHHHHhcc
Q 006912 428 YPHLSEIVAFLIPLLDDKFPLI-RSISCWTLSRFSKFIVQDIG----------------HQNGREQFEKVLMGLLKRILD 490 (626)
Q Consensus 428 ~~~l~~l~~~l~~~l~d~~~~v-r~~a~~~l~~l~~~~~~~~~----------------~~~~~~~~~~ll~~l~~~l~d 490 (626)
.||++.++|.++..+..-.+.| -+.++.+.++=.+.+.+... ...-...+..++|.+.+.+..
T Consensus 1167 kP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~ 1246 (1702)
T KOG0915|consen 1167 KPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRG 1246 (1702)
T ss_pred cchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 9999999999988887544433 33444443332322221100 001234567888888888775
Q ss_pred C-CHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHH
Q 006912 491 T-NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLI 569 (626)
Q Consensus 491 ~-~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~ 569 (626)
. .-..|..++..+..+...++.++.||...++..++..+.+.++.+++....+.+.++....++ -+..++..++
T Consensus 1247 sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~d-----q~qKLie~~l 1321 (1702)
T KOG0915|consen 1247 SVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPD-----QMQKLIETLL 1321 (1702)
T ss_pred cCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChH-----HHHHHHHHHH
Confidence 4 345677888888999999999999999999999999999988888888888888888765442 2333444433
Q ss_pred HH-HhcCCCCCCccchHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Q 006912 570 AK-WQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQT 617 (626)
Q Consensus 570 ~~-~~~~~~~~~~~~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~~l~~ 617 (626)
.. +++. +......+.++..++......+..|...|+|.++-....
T Consensus 1322 ~~~l~k~---es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~e 1367 (1702)
T KOG0915|consen 1322 ADLLGKD---ESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHE 1367 (1702)
T ss_pred HHHhccC---CCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhH
Confidence 32 2322 111123444454466666667888888999887755443
No 37
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.61 E-value=3e-12 Score=145.19 Aligned_cols=431 Identities=12% Similarity=0.123 Sum_probs=292.5
Q ss_pred CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcC
Q 006912 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG 125 (626)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~ 125 (626)
+.+....|+.+|. ..+.+++..++..|+............-......+.|++.|.+++..++..++..++.++....
T Consensus 402 ~~daik~LV~LL~---~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nd 478 (2102)
T PLN03200 402 HAEAKKVLVGLIT---MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVD 478 (2102)
T ss_pred hccchhhhhhhhc---cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 3456667777775 4457888888888875442211110111112234678888988899999999999999986432
Q ss_pred cCch----HHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchh--hhhHHHHHHhcCCCChHHHHH
Q 006912 126 IAGW----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI--NIFLPRLLQFFQSPHTSLRKL 199 (626)
Q Consensus 126 ~~~~----~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~vr~~ 199 (626)
.+.+ .+.+|.|.+++.+++..+++.++.+|+.++..... .. ..+ .+.+|.+++.|++++.+++..
T Consensus 479 enr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q-ir--------~iV~~aGAIppLV~LL~sgd~~~q~~ 549 (2102)
T PLN03200 479 ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSED-IR--------ACVESAGAVPALLWLLKNGGPKGQEI 549 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH-HH--------HHHHHCCCHHHHHHHHhCCCHHHHHH
Confidence 2333 45689999999999999999999999999874221 11 112 467889999999999999999
Q ss_pred HHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccc--hhhh--HHHHHHHHHhhccCCC
Q 006912 200 SLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF--LEPH--LRNLFEYMLQVNKDTD 275 (626)
Q Consensus 200 al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~--l~~l~~~~~~~~~~~~ 275 (626)
|+.+|.+++...... .++.++.++..+++.++..+++++..+....... .... -..-++.+...+++.+
T Consensus 550 Aa~AL~nLi~~~d~~-------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs 622 (2102)
T PLN03200 550 AAKTLTKLVRTADAA-------TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK 622 (2102)
T ss_pred HHHHHHHHHhccchh-------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC
Confidence 999999998653322 2355666677777888888888887776532221 1111 1245667777888888
Q ss_pred hHHHHHHHhHHHHhhccCCcchhHH-hhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCC
Q 006912 276 DDVALEACEFWHSYFEAQLPHENLK-EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENP 354 (626)
Q Consensus 276 ~~v~~~a~~~l~~l~~~~~~~~~~~-~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 354 (626)
+.++..|..++..++... ..... -.....+|.++..+...+.
T Consensus 623 ~~ikk~Aa~iLsnL~a~~--~d~~~avv~agaIpPLV~LLss~~~----------------------------------- 665 (2102)
T PLN03200 623 EETQEKAASVLADIFSSR--QDLCESLATDEIINPCIKLLTNNTE----------------------------------- 665 (2102)
T ss_pred HHHHHHHHHHHHHHhcCC--hHHHHHHHHcCCHHHHHHHHhcCCh-----------------------------------
Confidence 999999999999998752 22111 2334556666665543221
Q ss_pred CCCCccccccccHHHHHHHHHHHHHhhcCc----chH-HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhh
Q 006912 355 EDDDDDIVNVWNLRKCSAAALDVLSNVFGD----EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYP 429 (626)
Q Consensus 355 ~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~----~~~-~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~ 429 (626)
.+++.++.+|..++..... .++ ...++.+.+++++++ ..+++.++.+|..++........-
T Consensus 666 -----------~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d---~~v~e~Al~ALanLl~~~e~~~ei 731 (2102)
T PLN03200 666 -----------AVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSS---IEVAEQAVCALANLLSDPEVAAEA 731 (2102)
T ss_pred -----------HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCC---hHHHHHHHHHHHHHHcCchHHHHH
Confidence 3688899999988864322 112 246788899999988 899999999999998876321111
Q ss_pred hHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCc-hhh--hHHHHHHHHHHHhccCCHHHHH--HHHHHHH
Q 006912 430 HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN-GRE--QFEKVLMGLLKRILDTNKRVQE--AACSAFA 504 (626)
Q Consensus 430 ~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~--~~~~ll~~l~~~l~d~~~~v~~--~a~~al~ 504 (626)
.-...++.+...+++.++.+|..|+++|.+++...+.. + ... .....+..++..|...+..... .|..+|.
T Consensus 732 ~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~----~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~ 807 (2102)
T PLN03200 732 LAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVD----DVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALA 807 (2102)
T ss_pred HhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChh----HHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 11346788999999999999999999999999876532 1 111 2345677788888766654444 4899999
Q ss_pred HHHHHh-ccccc--ch-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006912 505 TLEEEA-AEELA--PR-----LEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (626)
Q Consensus 505 ~l~~~~-~~~~~--~~-----l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~ 550 (626)
.+++.- +.... || .+.-+..|.+++...+...+..+++.|+.+++.
T Consensus 808 ~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 808 LLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred HHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence 998752 22221 11 123344566667666778888888888887653
No 38
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=7.3e-13 Score=129.93 Aligned_cols=349 Identities=15% Similarity=0.146 Sum_probs=256.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHh-hccCChhHHHHHHHhHhhhhh-CCcHHHHHHHHHHHHHHHhhcCcC----chHHHHHH
Q 006912 62 GKSVEIRQAAGLLLKNNLRTA-YKSMSPSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIA----GWLELLQA 135 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~~~-~~~l~~~~~~~i~~~L~~~l~-~~~~~vr~~~~~~l~~i~~~~~~~----~~~~ll~~ 135 (626)
+.++..+..+...+++.+.+. -+.+..-.+..+...+++.|. +.++.++.-++.++.+|+...... .-.+-+|.
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~ 156 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI 156 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH
Confidence 556677888888888776542 134555566677788888886 567999999999999999764211 11344678
Q ss_pred HHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCCh-HHHHHHHHHHHHHHhcc-ch
Q 006912 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLM-PS 213 (626)
Q Consensus 136 l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~-~vr~~al~~l~~~~~~~-~~ 213 (626)
+.+++.+++..+++.++.+|+.++...+.. .+. -.-..+++.++..+..++. .....+..+|..++..- |.
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~-Rd~------vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDC-RDY------VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHH-HHH------HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999998877653 111 1125678888888888765 78888999999999765 66
Q ss_pred HHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 214 ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 214 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
.-...+..+++.|..++.+.|+++...+|.++..+.....+.+.-.+. .+++.+..++.+.+..++..|+..++.++..
T Consensus 230 P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG 309 (514)
T KOG0166|consen 230 PPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG 309 (514)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec
Confidence 666778889999999999999999999999999999888877665544 5666666777777776776677666665443
Q ss_pred CCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHH
Q 006912 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (626)
Q Consensus 293 ~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~ 372 (626)
.....
T Consensus 310 --~d~QT------------------------------------------------------------------------- 314 (514)
T KOG0166|consen 310 --SDEQT------------------------------------------------------------------------- 314 (514)
T ss_pred --cHHHH-------------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHhhcCcchHHhHHHHHHHhhc-CCCCCChhHHHHHHHHHHHHHccCccchhhhH-HHHHHHHhhhcCCCchHHH
Q 006912 373 AALDVLSNVFGDEILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIR 450 (626)
Q Consensus 373 ~~l~~l~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr 450 (626)
++ . +-...+|.+..++. ++. ...|..|++.++.|+.+..+.+...+ ..++|.++..++..+..+|
T Consensus 315 q~------v----i~~~~L~~l~~ll~~s~~---~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~r 381 (514)
T KOG0166|consen 315 QV------V----INSGALPVLSNLLSSSPK---ESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIR 381 (514)
T ss_pred HH------H----HhcChHHHHHHHhccCcc---hhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHH
Confidence 00 0 01135667777777 444 56899999999999998876665433 3489999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchhhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Q 006912 451 SISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (626)
Q Consensus 451 ~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (626)
..|+|++++++..... ....|+ ..+++.+...|.-.+..+...+..++.++.+..
T Consensus 382 KEAawaIsN~ts~g~~-----~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 382 KEAAWAISNLTSSGTP-----EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred HHHHHHHHhhcccCCH-----HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 9999999998753221 122222 346777777776567777888999999998765
No 39
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.56 E-value=4.1e-11 Score=116.88 Aligned_cols=389 Identities=11% Similarity=0.138 Sum_probs=271.3
Q ss_pred HHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCch-----HHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccc
Q 006912 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW-----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (626)
Q Consensus 93 ~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~-----~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~ 167 (626)
.+...+++-+.++.+..|+..+.++..++...+...+ ..++..++..++.++..+ ...+.+++.+.-...
T Consensus 521 ~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~-~~il~~f~tv~vsl~---- 595 (975)
T COG5181 521 RVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV-GLILPCFSTVLVSLE---- 595 (975)
T ss_pred HHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc-cEEEecccceeeehh----
Confidence 4556778888899999999999999888876543322 335566666665443211 111223332222111
Q ss_pred cCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHH-HHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006912 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (626)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~ 246 (626)
+++ +..+..++..++..|+++.+.+|..|.+..++++..+..-- ...+..+=..|...++...+++....+.+++
T Consensus 596 --~r~--kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~ 671 (975)
T COG5181 596 --FRG--KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAIC 671 (975)
T ss_pred --hcc--CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHH
Confidence 111 35678889999999999999999999999888876543100 1122233355677788888999999999998
Q ss_pred HHHhhCc-cchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhh
Q 006912 247 LLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVE 325 (626)
Q Consensus 247 ~l~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~ 325 (626)
.+.+... ..+.|-+.+++|.+.-.+.+.+..|...++.+++.+|......-..++.+.- --.++..++. |
T Consensus 672 ~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRI-cfeLvd~Lks-------~- 742 (975)
T COG5181 672 SIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRI-CFELVDSLKS-------W- 742 (975)
T ss_pred HHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHH-HHHHHHHHHH-------h-
Confidence 8887543 4466677788888888889999999999999999999873221112222111 1111111111 1
Q ss_pred hhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCC
Q 006912 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEA 405 (626)
Q Consensus 326 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 405 (626)
...+|+.|...++.+++..|+. .++..+...+...+
T Consensus 743 --------------------------------------nKeiRR~A~~tfG~Is~aiGPq---dvL~~LlnnLkvqe--- 778 (975)
T COG5181 743 --------------------------------------NKEIRRNATETFGCISRAIGPQ---DVLDILLNNLKVQE--- 778 (975)
T ss_pred --------------------------------------hHHHHHhhhhhhhhHHhhcCHH---HHHHHHHhcchHHH---
Confidence 1147999999999999999973 34455666666766
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~ 485 (626)
-+.|.+.-.+++.+++.|+.. .++|.+..-...++..|+...+.++.-+-++..+. ..+|+..+.|.+-
T Consensus 779 Rq~RvctsvaI~iVae~cgpf------sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~-----s~dYvy~itPlle 847 (975)
T COG5181 779 RQQRVCTSVAISIVAEYCGPF------SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQA-----SLDYVYSITPLLE 847 (975)
T ss_pred HHhhhhhhhhhhhhHhhcCch------hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHH-----HHHHHHHhhHHHH
Confidence 788999999999999998643 37899988889999999999999999999988764 7899999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc
Q 006912 486 KRILDTNKRVQEAACSAFATLEEEAAEE-LAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (626)
Q Consensus 486 ~~l~d~~~~v~~~a~~al~~l~~~~~~~-~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~ 554 (626)
..|.|.++.-|..|...+..+.-+|... .....-.++..|..-+-.....+.....+++-.+...+|..
T Consensus 848 DAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g 917 (975)
T COG5181 848 DALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSG 917 (975)
T ss_pred hhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccH
Confidence 9999999999999999999999887422 22223333333433333445566667778888888877754
No 40
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.53 E-value=3.3e-11 Score=125.67 Aligned_cols=479 Identities=15% Similarity=0.077 Sum_probs=282.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhc-CC--ChHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhhccCC-hhHH
Q 006912 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ-FP--DFNNYLAFILARAE-GKSVEIRQAAGLLLKNNLRTAYKSMS-PSNQ 91 (626)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~~-~p--~~~~~l~~il~~~~-~~~~~~r~~a~~~l~~~i~~~~~~l~-~~~~ 91 (626)
+...++.+......++|+.+.+.|..... .| .-...+..++.... ...-.-|..|+.+++ ..+..++ +..+
T Consensus 160 ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~----~~~~~~~~~~vk 235 (759)
T KOG0211|consen 160 LLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFG----KLYVSLPDDAVK 235 (759)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhH----HhccCCChHHHH
Confidence 44455554443333378888888777532 22 12223333332211 333345666655554 3445555 6677
Q ss_pred HHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcC-cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCC
Q 006912 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG-IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (626)
Q Consensus 92 ~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~-~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~ 170 (626)
..+++...+.-.+..+.||.+++.-++.+++... ...+.++++.+.++..++...+|..+...+..+...+....
T Consensus 236 ~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~---- 311 (759)
T KOG0211|consen 236 RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD---- 311 (759)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch----
Confidence 7888777777788999999999999999998763 35678889999999999888999999999999988776532
Q ss_pred CCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 006912 171 PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (626)
Q Consensus 171 ~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~ 250 (626)
.....+.+.+++...|+++.+|....+.+..+.....+... -....+.....+++...++|..+..-...+..
T Consensus 312 -----d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~--~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~ 384 (759)
T KOG0211|consen 312 -----DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSAT--RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLAC 384 (759)
T ss_pred -----hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccC--cccchhhHHHHhcchhhhhhHHhhcchHHHhh
Confidence 22477888999999999999999888877776654332110 00113334444444444454444433333322
Q ss_pred hCc--cchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchh---------------HHhhhhhhHHHHhhh
Q 006912 251 VRP--SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHEN---------------LKEFLPRLVPVLLSN 313 (626)
Q Consensus 251 ~~~--~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~---------------~~~~l~~li~~l~~~ 313 (626)
... ....-....+++.+.....+....+|.....+...+.......+. ......++++.+...
T Consensus 385 ~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 385 YLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred hcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence 111 011111122234444444444444444443333332111000000 000001111100000
Q ss_pred cccCc-hhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcch-HHhHH
Q 006912 314 MIYAD-DDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI-LPTLM 391 (626)
Q Consensus 314 l~~~~-~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~l~ 391 (626)
....+ ..+++. .+...|-. ... .+...|.+|.+..+.+-.++...|..+ -+.+.
T Consensus 465 ~~v~~v~g~~~~-----------s~slLp~i--------~el-----~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~ 520 (759)
T KOG0211|consen 465 EEVNDVIGISTV-----------SNSLLPAI--------VEL-----AEDLLWRVRLAILEYIPQLALQLGVEFFDEKLA 520 (759)
T ss_pred HhccCcccchhh-----------hhhhhhhh--------hhh-----ccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHH
Confidence 00000 000000 00000000 000 012268999999999999999998644 34566
Q ss_pred HHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCC
Q 006912 392 PVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQ 471 (626)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 471 (626)
+.+...+.+.. ...|++|...+..+++..+ ..-....+++.++....+++..+|.+.+.++..+++.++.
T Consensus 521 ~l~~~~l~d~v---~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~----- 590 (759)
T KOG0211|consen 521 ELLRTWLPDHV---YSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ----- 590 (759)
T ss_pred HHHHhhhhhhH---HHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc-----
Confidence 66777777766 7899999999999988776 2345566788888888888999999999999999988864
Q ss_pred chhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 006912 472 NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE-LAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (626)
Q Consensus 472 ~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~-~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~ 549 (626)
+-+...++|.+.....|+.+.||..+++.|..+....... ... .+.+.+..+..+.+-.++-.+..+.+.+..
T Consensus 591 --ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~---~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 591 --EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDE---EVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred --HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHH---HHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 4566788888888889999999999999999998766432 122 222222222223333444466666666543
No 41
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=3.7e-10 Score=121.33 Aligned_cols=582 Identities=15% Similarity=0.203 Sum_probs=306.7
Q ss_pred HHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCCh
Q 006912 11 EQGFNEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (626)
Q Consensus 11 ~~~~~~l~~~l~~~~s~--d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~ 88 (626)
.....++..++....+| +.+ .|.+|.+.|.+++..|+.|.....++.. ++.+.+|++|..+|.+.++..|..++.
T Consensus 6 ~~l~~~lldavv~~~~~~~s~~-~r~eA~~~l~~lke~~~~~~~~~~iL~~--s~~~~~k~f~Lqlle~vik~~W~~~~~ 82 (1041)
T KOG2020|consen 6 NKLDSELLDAVVVTLNPEGSNE-ERGEAQQILEELKEEPDSWLQVYLILKL--STNPILKYFALQLLENVIKFRWNSLPV 82 (1041)
T ss_pred hhHHHHHHHhHHHHhCcccchH-HHHHHHHHHHHHHhCcchHHHHHHHHhc--cCCchhheeeHHHHHHHHHHhcccCCc
Confidence 34445677777777776 444 9999999999999999999888888875 689999999999999999999999999
Q ss_pred hHHHHHHHhHhhhhhC--C-------cHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHh
Q 006912 89 SNQQYIKSELLPCLGA--A-------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKIC 159 (626)
Q Consensus 89 ~~~~~i~~~L~~~l~~--~-------~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~ 159 (626)
+.+..+|...+..... + ...++..++..+..|++.++++.||++++.+.+.... +..+++.++..+..+.
T Consensus 83 ~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~-s~~~~el~m~Il~lLs 161 (1041)
T KOG2020|consen 83 EERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKT-SETVCELSMIILLLLS 161 (1041)
T ss_pred cccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhc-CcccchHHHHHHHHHH
Confidence 9999999999886631 1 3457888999999999999999999999999998874 4467778888888887
Q ss_pred hhchhccccCCCC----CccchhhhhHHHH----HHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcC
Q 006912 160 EDIPQVLDSDVPG----LAECPINIFLPRL----LQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN 231 (626)
Q Consensus 160 ~~~~~~~~~~~~~----~~~~~~~~il~~l----~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 231 (626)
+.+-..-...... .+.......+..+ .......+..+-.+++..+..+++++|-...-.. +++..++....
T Consensus 162 Edvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~~~~atl~tl~~fl~wip~~~I~~t-n~l~~~l~~~l 240 (1041)
T KOG2020|consen 162 EEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSELLSATLETLLRFLEWIPLGYIFET-NILELLLNKFL 240 (1041)
T ss_pred HHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccHHHHHHh-hhHHHHHHhcc
Confidence 7765432211100 0001111111111 1122222333777788888888888773322111 11333333222
Q ss_pred CCCHHHHHHHHHHHHHHHhhCcc---------------------------------------------------------
Q 006912 232 DPSAEVRKLVCAAFNLLIEVRPS--------------------------------------------------------- 254 (626)
Q Consensus 232 ~~~~~~~~~~~~~l~~l~~~~~~--------------------------------------------------------- 254 (626)
+ .+..|..+++||..++.....
T Consensus 241 n-~~~~r~~al~CL~ei~s~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~~~~ 319 (1041)
T KOG2020|consen 241 N-APELRNNALSCLTELLSRKRSIYERKTVPMFNLTIYQLRSIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLFFEQHI 319 (1041)
T ss_pred c-hHHHHHHHHHHHHHHHhccccchhHHhHHHHHHHHHHHHHhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 345555566665555543221
Q ss_pred -chhh-------hHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHH--HHhh--hcccCchhhh
Q 006912 255 -FLEP-------HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVP--VLLS--NMIYADDDES 322 (626)
Q Consensus 255 -~~~~-------~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~--~l~~--~l~~~~~d~~ 322 (626)
.+++ ++..+...+.....++..-.+. +++.|..+.......+ .|++..-.+ .... .+.....+..
T Consensus 320 ~lle~~~~~~~~~~~~~~~li~i~~~~~se~~~~-~ld~W~~lv~~l~~~~--~~ll~~s~~~~~~~~~~ri~~rk~~y~ 396 (1041)
T KOG2020|consen 320 ALLESSLSQRPVLLEALLELILISTIEPSEIFKI-CLDYWNKLVADLYYNK--PPLLQLSTTLPSISDYSRIDFRKSIYQ 396 (1041)
T ss_pred HHHcCchhhhhHHHHHHHHHHHHhccCchhHHHH-HHHHHHHHHHhhhccc--ccccccccccccccchhccchHHHHHH
Confidence 0000 0000000000011111122222 5555555544311100 111111000 0000 0000000000
Q ss_pred hh-hhh---ccCCCCCCCCCCCcccccccCCCCCCCCCCC--c--cccccccHHHHHHHHHHHHHhhcCcchHHhHHHHH
Q 006912 323 LV-EAE---EDESLPDRDQDLKPRFHSSRLHGSENPEDDD--D--DIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVI 394 (626)
Q Consensus 323 ~~-~~~---~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l 394 (626)
.. ... ..+ .-.+|...... +++..+. + -+...-.......+.+...+-.-+......+.+.+
T Consensus 397 ~~~~~~r~l~l~------~m~~Pe~vliv----e~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~~~~~kl 466 (1041)
T KOG2020|consen 397 EFLSKLRLLRLE------RMAKPEEVLIV----ENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVVDTEKIMTEKL 466 (1041)
T ss_pred HHHHHHHHHHHH------HhcCchheeEE----echHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhhhhhhhhhHhH
Confidence 00 000 000 00000000000 0000000 0 00000011111122222221111111111122223
Q ss_pred HHhhcCCCCCChhHHHHHHHHHHHHHccCccch-hhhHHHHHHHHhhhcC-----CCchHHHHHHHHHHHHHHHHHhhhc
Q 006912 395 QAKLSASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRFSKFIVQDI 468 (626)
Q Consensus 395 ~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~-~~~l~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~ 468 (626)
...+... ..+|.....-+++++.++....+.+ ..++..+..-++..++ |..-.+-...+..+|++-.+..
T Consensus 467 ~~~l~~~-~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~p~Fl~--- 542 (1041)
T KOG2020|consen 467 AIQLDGD-EWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGKDNKAVIASNIMYVVGQYPRFLK--- 542 (1041)
T ss_pred HHHhhHH-HHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhcccchHHH---
Confidence 3333222 2336677777888886665442222 2333322222222221 3222233334445554443332
Q ss_pred CCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcc--------cccchHHHHHHHHHHHHhhhhHHHHHHH
Q 006912 469 GHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE--------ELAPRLEIILQHLMMAFGKYQRRNLRIV 540 (626)
Q Consensus 469 ~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~--------~~~~~l~~i~~~l~~~l~~~~~~~~~~~ 540 (626)
.+..++...+..++..++.....|+..+|.++.+++..|.. ...||...++..+...+...+...+...
T Consensus 543 ---~h~~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~~l~~~q~~~~ 619 (1041)
T KOG2020|consen 543 ---AHWKFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITEDLQPQQRHTF 619 (1041)
T ss_pred ---HHHHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhcCchHHHHHHH
Confidence 24566666778888888888888999999999999988753 3557888898888888888888888888
Q ss_pred HHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcC----CCCCCc---------cchHHHHHHHHHHHhccccccchHHH
Q 006912 541 YDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL----PNSDKD---------LFPLLECFTSIAQALGAGFTQFAQPV 607 (626)
Q Consensus 541 ~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~---------~~~~l~~~~~l~~~~g~~f~~~~~~i 607 (626)
.++++.++.+........++....+-.--..|.++ ..++.. +...+.+...+.+.+|..|.+-...+
T Consensus 620 ~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~i~~~~~~~~~sl~~~f~~~~~~~ 699 (1041)
T KOG2020|consen 620 YEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLNILKTNSRALTSLGSTFVPQLGKI 699 (1041)
T ss_pred HHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHHHHHhHHHHHHhcCcccccccccc
Confidence 88888554443322211123333322111223221 111111 13567778888999999999999999
Q ss_pred HHHHHHHHHHH
Q 006912 608 FQRCINIIQTQ 618 (626)
Q Consensus 608 ~~~l~~~l~~~ 618 (626)
+...++++..+
T Consensus 700 ~~d~~~l~~~~ 710 (1041)
T KOG2020|consen 700 YLDMLQLYIKQ 710 (1041)
T ss_pred cHHHHHHHHHh
Confidence 99988887654
No 42
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.51 E-value=1.4e-10 Score=121.11 Aligned_cols=477 Identities=16% Similarity=0.102 Sum_probs=318.8
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc---CCChHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhhccCChh
Q 006912 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (626)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~---~p~~~~~l~~il~~~-~~~~~~~r~~a~~~l~~~i~~~~~~l~~~ 89 (626)
...+.+.+......+.+ +...+...+..+.. .|++...+...+... ....-.+|+.+.-.++.....+ +.+
T Consensus 119 r~~lipf~~e~~~~~de-v~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~----~~~ 193 (759)
T KOG0211|consen 119 RLELIPFLTEAEDDEDE-VLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGL----PKE 193 (759)
T ss_pred hhhhhhHHHHhccchhH-HHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhc----ChH
Confidence 45566777777755555 88888887776643 456555443333211 1334567888888887666543 333
Q ss_pred HHHHHHHhHhhhhhCCc-HHHHHHHHHHHHHHHhhcC-cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccc
Q 006912 90 NQQYIKSELLPCLGAAD-RHIRSTVGTIVSVVVQLGG-IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (626)
Q Consensus 90 ~~~~i~~~L~~~l~~~~-~~vr~~~~~~l~~i~~~~~-~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~ 167 (626)
........++..+...+ -.-|..++.+++....... ...-.++.+...+.+++.++.+|.++..-++.+....+...
T Consensus 194 ~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~- 272 (759)
T KOG0211|consen 194 KLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEI- 272 (759)
T ss_pred HHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHH-
Confidence 33222223333333222 2235556666666665443 33447788888999999999999999999999988887642
Q ss_pred cCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006912 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (626)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 247 (626)
....++|.+.+...|....||.+|.+++..+........ +....+.+.+++..+|+++.++......+..
T Consensus 273 ---------~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~ 342 (759)
T KOG0211|consen 273 ---------VKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSE 342 (759)
T ss_pred ---------HHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhh
Confidence 247788888999999888999999999999998765443 4444668899999999999999988888887
Q ss_pred HHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhh
Q 006912 248 LIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAE 327 (626)
Q Consensus 248 l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~ 327 (626)
+....+. ...-....+.....+++...++|.+...-...++..........-....++|.+.....+.
T Consensus 343 L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~---------- 410 (759)
T KOG0211|consen 343 LSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDN---------- 410 (759)
T ss_pred HHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcc----------
Confidence 7765444 1222355666677788888888877765555555442111111112223334332211110
Q ss_pred ccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-chHHhHHHHHHHhhcCCCCCCh
Q 006912 328 EDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAW 406 (626)
Q Consensus 328 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~ 406 (626)
...+|.+.+..+..+...+|. ..+..+.|.+...+++.. +
T Consensus 411 ------------------------------------~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~---~ 451 (759)
T KOG0211|consen 411 ------------------------------------ALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDED---P 451 (759)
T ss_pred ------------------------------------cchHHHHHhccccccCccCCcCcCccccChhhhhhcchhh---H
Confidence 013566666666666666665 567788888998998888 8
Q ss_pred hHHHHHHHHHHHHHccC-ccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHH
Q 006912 407 KDREAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (626)
Q Consensus 407 ~~r~aal~~l~~l~~~~-~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~ 485 (626)
.+|......+..+-... ...+.......+|.+...-.|.++++|.+..+.+-.++...+ ..++.+-+..++
T Consensus 452 ~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--------~~~~~~~~~~l~ 523 (759)
T KOG0211|consen 452 IVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--------VEFFDEKLAELL 523 (759)
T ss_pred HHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--------hHHhhHHHHHHH
Confidence 99988887664433322 133445666788988888889999999999999888887554 233333344444
Q ss_pred H-HhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhh
Q 006912 486 K-RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDIL 564 (626)
Q Consensus 486 ~-~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l 564 (626)
. -+.|....+|.+|+..+..+++..|.. =+...+++.++......+...+...+.++..++..+|.++ +...+
T Consensus 524 ~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~--w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~L 597 (759)
T KOG0211|consen 524 RTWLPDHVYSIREAAARNLPALVETFGSE--WARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDL 597 (759)
T ss_pred HhhhhhhHHHHHHHHHHHhHHHHHHhCcc--hhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHH
Confidence 3 355667899999999999999999833 3456667777776666667788899999999999999875 56778
Q ss_pred hHHHHHH
Q 006912 565 MPPLIAK 571 (626)
Q Consensus 565 ~~~l~~~ 571 (626)
+|++...
T Consensus 598 lp~~~~l 604 (759)
T KOG0211|consen 598 LPVFLDL 604 (759)
T ss_pred hHHHHHh
Confidence 8776653
No 43
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.49 E-value=1.3e-11 Score=136.61 Aligned_cols=273 Identities=21% Similarity=0.207 Sum_probs=195.1
Q ss_pred HhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCcc
Q 006912 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (626)
Q Consensus 96 ~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~ 175 (626)
+.|+..|.++++.||..++..|+.+.. ++.++.|.+.+.++++.+|..++..|..+.+..+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~----------- 685 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP----------- 685 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----------
Confidence 456677788999999999988887642 55778888999999999999999998877542221
Q ss_pred chhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccc
Q 006912 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (626)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 255 (626)
.+.+...|+++++.||..|+.+|..+-... ...+...+.|+++.+|..++.+|..+-. .
T Consensus 686 ------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--~-- 744 (897)
T PRK13800 686 ------APALRDHLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD--V-- 744 (897)
T ss_pred ------hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC--c--
Confidence 134666778889999999999888753211 1234567789999999999999887521 0
Q ss_pred hhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCC
Q 006912 256 LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDR 335 (626)
Q Consensus 256 ~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~ 335 (626)
+.+...+.|.+.+||..+...|..+..... . .++.+...+.+.
T Consensus 745 ---------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--~--------~~~~L~~ll~D~------------------ 787 (897)
T PRK13800 745 ---------ESVAGAATDENREVRIAVAKGLATLGAGGA--P--------AGDAVRALTGDP------------------ 787 (897)
T ss_pred ---------HHHHHHhcCCCHHHHHHHHHHHHHhccccc--h--------hHHHHHHHhcCC------------------
Confidence 123456788899999999988888755311 0 012222222110
Q ss_pred CCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHH
Q 006912 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLA 415 (626)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~ 415 (626)
++.+|..|..+|..+... +.+.+.+...+.+++ |.+|.+|+.+
T Consensus 788 ----------------------------d~~VR~aA~~aLg~~g~~------~~~~~~l~~aL~d~d---~~VR~~Aa~a 830 (897)
T PRK13800 788 ----------------------------DPLVRAAALAALAELGCP------PDDVAAATAALRASA---WQVRQGAARA 830 (897)
T ss_pred ----------------------------CHHHHHHHHHHHHhcCCc------chhHHHHHHHhcCCC---hHHHHHHHHH
Confidence 135899988888766221 123355777888988 9999999999
Q ss_pred HHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHH
Q 006912 416 LGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRV 495 (626)
Q Consensus 416 l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v 495 (626)
|+.+.. +..++.+...++|+++.||..|+++|+++.. . +...+.+.+.++|+++.|
T Consensus 831 L~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~-----------~---~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 831 LAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWPG-----------D---PAARDALTTALTDSDADV 886 (897)
T ss_pred HHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC-----------C---HHHHHHHHHHHhCCCHHH
Confidence 987643 1246888889999999999999999998621 0 223566778888999999
Q ss_pred HHHHHHHHHH
Q 006912 496 QEAACSAFAT 505 (626)
Q Consensus 496 ~~~a~~al~~ 505 (626)
|..|..+|..
T Consensus 887 r~~A~~aL~~ 896 (897)
T PRK13800 887 RAYARRALAH 896 (897)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 44
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.48 E-value=1.2e-11 Score=136.93 Aligned_cols=273 Identities=17% Similarity=0.123 Sum_probs=199.1
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccc
Q 006912 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (626)
Q Consensus 133 l~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (626)
++.|.+.+.|+++.+|..++..|+.+.. ...++.|.+.|.|+++.||..|+.+|..+.+..+
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~ 684 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP------------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP 684 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc------------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC
Confidence 4678888899999999999999977521 4467788889999999999999999988865433
Q ss_pred hHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
. .+.+...++++++.+|..+++.|..+-.... ..++..+.|.+..+|..|+..|..+-..
T Consensus 685 ~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-----------~~l~~~L~D~d~~VR~~Av~aL~~~~~~ 744 (897)
T PRK13800 685 P---------APALRDHLGSPDPVVRAAALDVLRALRAGDA-----------ALFAAALGDPDHRVRIEAVRALVSVDDV 744 (897)
T ss_pred c---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-----------HHHHHHhcCCCHHHHHHHHHHHhcccCc
Confidence 2 1245556677899999999998887542111 1234567899999999999887765221
Q ss_pred CCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHH
Q 006912 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (626)
Q Consensus 293 ~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~ 372 (626)
+. +...+.+ ..+.+|..+.
T Consensus 745 -----------~~----l~~~l~D----------------------------------------------~~~~VR~~aa 763 (897)
T PRK13800 745 -----------ES----VAGAATD----------------------------------------------ENREVRIAVA 763 (897)
T ss_pred -----------HH----HHHHhcC----------------------------------------------CCHHHHHHHH
Confidence 01 1111110 0135899999
Q ss_pred HHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHH
Q 006912 373 AALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSI 452 (626)
Q Consensus 373 ~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~ 452 (626)
.+|..+...-+ ..++.+..++++++ +.+|.+|+.+|+.+... ..+.+.+...+.|+++.||..
T Consensus 764 ~aL~~~~~~~~-----~~~~~L~~ll~D~d---~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~ 826 (897)
T PRK13800 764 KGLATLGAGGA-----PAGDAVRALTGDPD---PLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQG 826 (897)
T ss_pred HHHHHhccccc-----hhHHHHHHHhcCCC---HHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHH
Confidence 99887744322 22566778888998 99999999999988542 112355778889999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhh
Q 006912 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (626)
Q Consensus 453 a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~ 532 (626)
|+++|+.+.. +..++.|...+.|+++.||..|+.+|+.+ +--+...+.|...+++.
T Consensus 827 Aa~aL~~l~~---------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---------~~~~~a~~~L~~al~D~ 882 (897)
T PRK13800 827 AARALAGAAA---------------DVAVPALVEALTDPHLDVRKAAVLALTRW---------PGDPAARDALTTALTDS 882 (897)
T ss_pred HHHHHHhccc---------------cchHHHHHHHhcCCCHHHHHHHHHHHhcc---------CCCHHHHHHHHHHHhCC
Confidence 9999987652 22347788888999999999999999996 11234566677888888
Q ss_pred hHHHHHHHHHHHH
Q 006912 533 QRRNLRIVYDAIG 545 (626)
Q Consensus 533 ~~~~~~~~~~~l~ 545 (626)
+..++..+.++|.
T Consensus 883 d~~Vr~~A~~aL~ 895 (897)
T PRK13800 883 DADVRAYARRALA 895 (897)
T ss_pred CHHHHHHHHHHHh
Confidence 8888888888875
No 45
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3.5e-09 Score=109.77 Aligned_cols=413 Identities=15% Similarity=0.179 Sum_probs=267.0
Q ss_pred CCHHHHHHHHHHHHHHHH--HhhccCChhHHHHHHHhHhhhhh--C---------CcHHHHH-------------HHHHH
Q 006912 63 KSVEIRQAAGLLLKNNLR--TAYKSMSPSNQQYIKSELLPCLG--A---------ADRHIRS-------------TVGTI 116 (626)
Q Consensus 63 ~~~~~r~~a~~~l~~~i~--~~~~~l~~~~~~~i~~~L~~~l~--~---------~~~~vr~-------------~~~~~ 116 (626)
..+.+-..+..++.+.+. ..|+.+.|-...-+...+++++. + +.+.+|+ ++..+
T Consensus 316 ls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~ 395 (1010)
T KOG1991|consen 316 LSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDF 395 (1010)
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHH
Confidence 468888899999999884 56888888887778888888763 2 3456775 45667
Q ss_pred HHHHHhhcCcCchHHHHHHHHHHhc------c--CChhHHhHHHHHHHHHhhhchhccccCCCCCccchh-hhhHHHHHH
Q 006912 117 VSVVVQLGGIAGWLELLQALVTCLD------S--NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI-NIFLPRLLQ 187 (626)
Q Consensus 117 l~~i~~~~~~~~~~~ll~~l~~~l~------~--~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~-~~il~~l~~ 187 (626)
+..++++.++..+|.+++++.+.++ . .+++.+.+|+.+++.+++.....-. + ...+ .-+++.++.
T Consensus 396 l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~--~----~~~mE~flv~hVfP 469 (1010)
T KOG1991|consen 396 LTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP--Y----KSQMEYFLVNHVFP 469 (1010)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc--h----HHHHHHHHHHHhhH
Confidence 7777777778899999999999887 2 3567889999999999965543210 0 1111 445667888
Q ss_pred hcCCCChHHHHHHHHHHHHHHhc-cchHHHHhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhCc---cchhhhHHH
Q 006912 188 FFQSPHTSLRKLSLGSVNQFIML-MPSALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRP---SFLEPHLRN 262 (626)
Q Consensus 188 ~l~~~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~---~~~~~~l~~ 262 (626)
.++++..-+|..||..++.+.+. .+. ...+.+++....+.+. |.+--||..|.-+|..++.... +.+++|++.
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~ 547 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPP 547 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhH
Confidence 89999999999999999988732 221 1234455667777666 6667799999999999998766 448999999
Q ss_pred HHHHHHhhccCCChHHHHHHHhHH-HHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCc
Q 006912 263 LFEYMLQVNKDTDDDVALEACEFW-HSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKP 341 (626)
Q Consensus 263 l~~~~~~~~~~~~~~v~~~a~~~l-~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~ 341 (626)
+++-++...+..+.+.-..+++-+ ..+.+. ......+...++.....+.+..+++
T Consensus 548 ~mq~lL~L~ne~End~Lt~vme~iV~~fseE--lsPfA~eL~q~La~~F~k~l~~~~~---------------------- 603 (1010)
T KOG1991|consen 548 IMQELLKLSNEVENDDLTNVMEKIVCKFSEE--LSPFAVELCQNLAETFLKVLQTSED---------------------- 603 (1010)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHh--hchhHHHHHHHHHHHHHHHHhccCC----------------------
Confidence 999999988877666555555443 233332 1111222333334443444432111
Q ss_pred ccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcC---c--ch----HHhHHHHHHHhhcCCCCCChhHHHHH
Q 006912 342 RFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG---D--EI----LPTLMPVIQAKLSASGDEAWKDREAA 412 (626)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~---~--~~----~~~l~~~l~~~l~~~~~~~~~~r~aa 412 (626)
+++.++| -..+|..+|..+...+- + ++ -+.++|.+...+++.- -..-+.+
T Consensus 604 ------------~~~~~dd------k~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i---~dfyeE~ 662 (1010)
T KOG1991|consen 604 ------------EDESDDD------KAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDI---TDFYEEL 662 (1010)
T ss_pred ------------CCccchH------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHH
Confidence 1111111 24556677776666542 1 23 3455566666665542 2222222
Q ss_pred HHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCC
Q 006912 413 VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN 492 (626)
Q Consensus 413 l~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~ 492 (626)
+..+.. .....+.+.+.+-.+++.+...+++..-.--...+-++.++...-.+. -.....|...++.-+-+++.+.+
T Consensus 663 ~ei~~~-~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~--~~s~~~y~~il~~i~~~~l~~e~ 739 (1010)
T KOG1991|consen 663 LEIVSS-LTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPS--LLSNPDYLQILLEIIKKVLTSEN 739 (1010)
T ss_pred HHHHhh-hhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchh--hhccchHHHHHHHHHHHHHcCCC
Confidence 222222 222235577888899999999998766444445555566555432211 01345667777777777777642
Q ss_pred --HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh
Q 006912 493 --KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK 531 (626)
Q Consensus 493 --~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~ 531 (626)
..-...|++.+..++-+|+..+..|++.+++.....+..
T Consensus 740 ~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 740 GEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTR 780 (1010)
T ss_pred CchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhc
Confidence 344667999999999999877778888888877776665
No 46
>PRK09687 putative lyase; Provisional
Probab=99.47 E-value=1.9e-11 Score=115.26 Aligned_cols=253 Identities=15% Similarity=0.120 Sum_probs=181.9
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccc
Q 006912 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (626)
Q Consensus 133 l~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (626)
++.|...+.+++..+|..++..|+.+-. ..+++.+...++++++.+|..+..+|+.+.....
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~ 86 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG------------------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR 86 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc------------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence 4667777899999999999999865421 5567778888899999999999999999754211
Q ss_pred hHHHHhHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhc
Q 006912 213 SALFVSMDQYLQGLFLL-SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (626)
Q Consensus 213 ~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~ 291 (626)
. ....++.|..+ .+|+++.||..++.+|+.+....... ....++.+.....|.++.||..++..|+.+..
T Consensus 87 -~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 87 -C----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred -c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC
Confidence 0 12345666655 68899999999999999885433322 23455556667788899999999988765532
Q ss_pred cCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 006912 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (626)
Q Consensus 292 ~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a 371 (626)
. ..++.++..+.+. .|.+|..|
T Consensus 158 ~------------~ai~~L~~~L~d~----------------------------------------------~~~VR~~A 179 (280)
T PRK09687 158 E------------AAIPLLINLLKDP----------------------------------------------NGDVRNWA 179 (280)
T ss_pred H------------HHHHHHHHHhcCC----------------------------------------------CHHHHHHH
Confidence 1 2334444333211 13589999
Q ss_pred HHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHH
Q 006912 372 AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRS 451 (626)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~ 451 (626)
..+|+.+ ..+ -+...+.+...+++++ +.+|.+|+.+||.+.. +..+|.++..+++++ +|.
T Consensus 180 ~~aLg~~--~~~---~~~~~~~L~~~L~D~~---~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~ 239 (280)
T PRK09687 180 AFALNSN--KYD---NPDIREAFVAMLQDKN---EEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGD 239 (280)
T ss_pred HHHHhcC--CCC---CHHHHHHHHHHhcCCC---hHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHH
Confidence 9999877 111 2356677788888888 9999999999988643 246888888998866 677
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhc-cCCHHHHHHHHHHHHH
Q 006912 452 ISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFAT 505 (626)
Q Consensus 452 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~-d~~~~v~~~a~~al~~ 505 (626)
.++.++|.+.. +..+|.+...++ ++++.|+..|..++..
T Consensus 240 ~a~~ALg~ig~---------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 240 LIIEAAGELGD---------------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHhcCC---------------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 78888887764 245677777776 6789999999888764
No 47
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.45 E-value=1.1e-09 Score=113.01 Aligned_cols=357 Identities=17% Similarity=0.140 Sum_probs=240.3
Q ss_pred HhhhhhCCcHHHHHHHHHHHHHHHhhcCc-CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccc
Q 006912 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (626)
Q Consensus 98 L~~~l~~~~~~vr~~~~~~l~~i~~~~~~-~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~ 176 (626)
++.+|...+...-..++.++..+.....+ ...+++.+.+...+.++++.+|..++..++.+.+........ -
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~-------~ 115 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQL-------L 115 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHH-------h
Confidence 77778766555557788888888876533 347889999999999999999999999998887665432210 1
Q ss_pred hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccc
Q 006912 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (626)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 255 (626)
.-..+++.+..++.+++..|...|.++|..++...+ .+...++ +....+.+++..++..+|..+++++..+....++.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 126789999999999999999999999999987532 2222111 23667777777768889999999999999888887
Q ss_pred hhhhHH-HHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCC
Q 006912 256 LEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPD 334 (626)
Q Consensus 256 ~~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~ 334 (626)
+..... .+++.++..+.++|.-++..+++.+..+++.+...+.+.. ..+++.+...+.....|.
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~--~gi~~~L~~~l~~~~~dp------------- 259 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ--QGIFDKLSNLLQDSEEDP------------- 259 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh--CCHHHHHHHHHhccccCC-------------
Confidence 754443 5888888888888888899999999999986332222211 134455544443322110
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccccccccHH-HHHHHHHHHHHhhcCcc---hHHhHHHHHHHhhcCCCCCChhHHH
Q 006912 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLR-KCSAAALDVLSNVFGDE---ILPTLMPVIQAKLSASGDEAWKDRE 410 (626)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~a~~~l~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~r~ 410 (626)
+ .. .+. .......+.++..-+.. ..|.++..+...+.+.| ...+.
T Consensus 260 -------------------------~-~~--~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d---~~~~~ 308 (503)
T PF10508_consen 260 -------------------------R-LS--SLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQD---PTIRE 308 (503)
T ss_pred -------------------------c-cc--chhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC---hhHHH
Confidence 0 00 011 11224555555543332 34666666777777777 99999
Q ss_pred HHHHHHHHHHccCcc--ch----hhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHH---
Q 006912 411 AAVLALGAIAEGCIK--GL----YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL--- 481 (626)
Q Consensus 411 aal~~l~~l~~~~~~--~~----~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll--- 481 (626)
+|+.++|.++....+ .+ .+.+..++..+..........+|..++.+++.+....... .+..........+
T Consensus 309 ~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~-~~~~i~~~~~~w~~~~ 387 (503)
T PF10508_consen 309 VAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDR-QDNDILSITESWYESL 387 (503)
T ss_pred HHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHh
Confidence 999999999876522 11 2344556666777777778889999999999986432210 0000001111111
Q ss_pred -----H-HHHHHhccCCHHHHHHHHHHHHHHHHH
Q 006912 482 -----M-GLLKRILDTNKRVQEAACSAFATLEEE 509 (626)
Q Consensus 482 -----~-~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (626)
. .++..++.+-|.+|.++...|..++..
T Consensus 388 ~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 388 SGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred cCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 1 455566667799999999999999854
No 48
>PRK09687 putative lyase; Provisional
Probab=99.44 E-value=5.4e-11 Score=112.20 Aligned_cols=252 Identities=17% Similarity=0.122 Sum_probs=177.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHH
Q 006912 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR 261 (626)
Q Consensus 182 l~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 261 (626)
.+.+...|.+++..+|..++.+|..+-. +..++.+..++.++++.+|..++.+|..+-..... ..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~ 89 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QD 89 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hH
Confidence 4567788899999999999999977642 23355666777888999999999999997543211 23
Q ss_pred HHHHHHHhh-ccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCC
Q 006912 262 NLFEYMLQV-NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (626)
Q Consensus 262 ~l~~~~~~~-~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~ 340 (626)
..++.+... .++.++.||..++..|+.++.....+ ...++..+...+.
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~------~~~a~~~l~~~~~------------------------- 138 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY------SPKIVEQSQITAF------------------------- 138 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc------chHHHHHHHHHhh-------------------------
Confidence 455555544 67889999999999999986542111 1122222211111
Q ss_pred cccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHH
Q 006912 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (626)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~ 420 (626)
+.+|.+|..+..+|..+ +. +..++.+...+++++ |.+|..|..+||.+.
T Consensus 139 ---------------------D~~~~VR~~a~~aLg~~----~~---~~ai~~L~~~L~d~~---~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 139 ---------------------DKSTNVRFAVAFALSVI----ND---EAAIPLLINLLKDPN---GDVRNWAAFALNSNK 187 (280)
T ss_pred ---------------------CCCHHHHHHHHHHHhcc----CC---HHHHHHHHHHhcCCC---HHHHHHHHHHHhcCC
Confidence 11256899999888633 32 356677888888998 999999999999983
Q ss_pred ccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHH
Q 006912 421 EGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAAC 500 (626)
Q Consensus 421 ~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~ 500 (626)
... +.+.+.+...+.|.++.||..|+++||++.. ...+|.|++.+++++ ++..++
T Consensus 188 ~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---------------~~av~~Li~~L~~~~--~~~~a~ 242 (280)
T PRK09687 188 YDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD---------------KRVLSVLIKELKKGT--VGDLII 242 (280)
T ss_pred CCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC---------------hhHHHHHHHHHcCCc--hHHHHH
Confidence 221 2467888888899999999999999988542 356788888888765 677788
Q ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Q 006912 501 SAFATLEEEAAEELAPRLEIILQHLMMAFG-KYQRRNLRIVYDAIG 545 (626)
Q Consensus 501 ~al~~l~~~~~~~~~~~l~~i~~~l~~~l~-~~~~~~~~~~~~~l~ 545 (626)
.+|+.+-. +..++.|..+++ ..+..+...+.+++.
T Consensus 243 ~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 243 EAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 88887632 356666777776 445667777777764
No 49
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=5.2e-09 Score=106.11 Aligned_cols=517 Identities=13% Similarity=0.124 Sum_probs=292.9
Q ss_pred HHHHH-HHHhhcCCCCHHHHHHHHHHHHHHh--cCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccC--Chh
Q 006912 15 NEICR-LLEQQISPSSTADKSQIWQQLQQYS--QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM--SPS 89 (626)
Q Consensus 15 ~~l~~-~l~~~~s~d~~~~r~~a~~~L~~~~--~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l--~~~ 89 (626)
+++.. ++.-..++... +.++--+.|.-+. +.|+-|+.|+.-|.+.-+..+-.-..+....-+.+-++|+.. +++
T Consensus 87 e~ikslIv~lMl~s~~~-iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSda 165 (960)
T KOG1992|consen 87 EQIKSLIVTLMLSSPFN-IQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDA 165 (960)
T ss_pred HHHHHHHHHHHhcCcHH-HHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHH
Confidence 44433 33444566666 8888888887775 379999887776654323333333333333444455667652 333
Q ss_pred HHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhcc--CChh---HHhHHHHHHHHHhhhchh
Q 006912 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS--NDIN---HMEGAMDALSKICEDIPQ 164 (626)
Q Consensus 90 ~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~--~~~~---~r~~~l~~l~~l~~~~~~ 164 (626)
-..+||-.|- .+.++ ..+++....+.++. ++.. ...+.+..+.+++- +
T Consensus 166 L~~EIK~vLd-~f~~P-----------------------lt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfy---s 218 (960)
T KOG1992|consen 166 LWLEIKLVLD-RFAEP-----------------------LTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFY---S 218 (960)
T ss_pred HHHHHHHHHH-hhHhH-----------------------HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH---h
Confidence 4444443221 11111 12222222222211 1111 11122222222222 2
Q ss_pred ccccCCCCCccchhhhhHHHHHHhcCCC---------C----hHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcC
Q 006912 165 VLDSDVPGLAECPINIFLPRLLQFFQSP---------H----TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN 231 (626)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~~---------~----~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 231 (626)
..-.+.+.+|+.+++..++.+.+.++-. + .++|...|+.+..++..-++.+.+.+++++...++++.
T Consensus 219 Ln~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~ 298 (960)
T KOG1992|consen 219 LNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLV 298 (960)
T ss_pred hhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHH
Confidence 1122344555677899999998888621 1 35778899999999988888999999999988888765
Q ss_pred CC--CHH---HHHHHHHHHHHHHh--hCccchh--hhHHHHHH-----------------------HHHhhccCCChH-H
Q 006912 232 DP--SAE---VRKLVCAAFNLLIE--VRPSFLE--PHLRNLFE-----------------------YMLQVNKDTDDD-V 278 (626)
Q Consensus 232 ~~--~~~---~~~~~~~~l~~l~~--~~~~~~~--~~l~~l~~-----------------------~~~~~~~~~~~~-v 278 (626)
+- ++. ....|++.|..+++ ++.+.|. ..+.++.+ ++-+.++..|-+ -
T Consensus 299 ~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTR 378 (960)
T KOG1992|consen 299 STSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTR 378 (960)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchh
Confidence 32 222 33455666666654 2333332 12223322 222233333322 3
Q ss_pred HHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCC
Q 006912 279 ALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDD 358 (626)
Q Consensus 279 ~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (626)
|+.|++++..+++.. ...+.+.+..-+..++.....
T Consensus 379 RR~a~dlvrgL~~~f--e~~vt~v~~~~v~~~l~~y~~------------------------------------------ 414 (960)
T KOG1992|consen 379 RRAAIDLVRGLCKNF--EGQVTGVFSSEVQRLLDQYSK------------------------------------------ 414 (960)
T ss_pred HHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHhcc------------------------------------------
Confidence 678889999999872 333334444444433321111
Q ss_pred ccccccccHHHHHHHHHHHHHhhc-----Cc-------chHHhHHHHHHHhhcCCC-CCChhHHHHHHHHHHHHHccCcc
Q 006912 359 DDIVNVWNLRKCSAAALDVLSNVF-----GD-------EILPTLMPVIQAKLSASG-DEAWKDREAAVLALGAIAEGCIK 425 (626)
Q Consensus 359 ~~~~~~~~~r~~a~~~l~~l~~~~-----~~-------~~~~~l~~~l~~~l~~~~-~~~~~~r~aal~~l~~l~~~~~~ 425 (626)
+.+.+|.-...+...+..++..- |- ++.+.+...+...+.+++ ...+-.|.+++.-+..+-...+
T Consensus 415 -nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~- 492 (960)
T KOG1992|consen 415 -NPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLG- 492 (960)
T ss_pred -CCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCC-
Confidence 12344655556666666665442 11 223334444444555543 1225566666543322222222
Q ss_pred chhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhh----hcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHH
Q 006912 426 GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ----DIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACS 501 (626)
Q Consensus 426 ~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~ 501 (626)
.+++-.++|.+...++.+...|-.-|+.++.++.....+ .-++....++...++..+++.+.-+...--...++
T Consensus 493 --~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmK 570 (960)
T KOG1992|consen 493 --KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMK 570 (960)
T ss_pred --hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHH
Confidence 356778899999999998888888888888887654433 11344667888888999998887654444577899
Q ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHhhhh----HHH-HHHHHHHHHHHHHHhccccC--ChhhhhhhhHHHHHHHhc
Q 006912 502 AFATLEEEAAEELAPRLEIILQHLMMAFGKYQ----RRN-LRIVYDAIGTLADAVGFELN--QPVYLDILMPPLIAKWQQ 574 (626)
Q Consensus 502 al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~----~~~-~~~~~~~l~~i~~~~~~~~~--~~~~~~~l~~~l~~~~~~ 574 (626)
|+.+++....+.+.|+.+.++..|.+.+.... +.. -...+++++.++..++..-. -+.+...++|.+...+..
T Consensus 571 aImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~e 650 (960)
T KOG1992|consen 571 AIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSE 650 (960)
T ss_pred HHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence 99999998888999999999999888776542 222 33789999999988765420 023556666655555542
Q ss_pred CCCCCCc-cchHHHHHHHHHHHhccccccchHHHHHH
Q 006912 575 LPNSDKD-LFPLLECFTSIAQALGAGFTQFAQPVFQR 610 (626)
Q Consensus 575 ~~~~~~~-~~~~l~~~~~l~~~~g~~f~~~~~~i~~~ 610 (626)
+-.+ +-+.++.++.+....+....+...+++|.
T Consensus 651 ---DI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~ 684 (960)
T KOG1992|consen 651 ---DIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPP 684 (960)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 1122 23777777777776655333333333333
No 50
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.39 E-value=3.9e-12 Score=115.23 Aligned_cols=354 Identities=15% Similarity=0.149 Sum_probs=226.3
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHhcc
Q 006912 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLM 211 (626)
Q Consensus 133 l~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~ 211 (626)
+|.+.+.+.|++-.....|..-++.+...-.. +-++. -.-..++|.+++++. .+..-.+-.|..++..+.+..
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~---PPIq~---VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETS---PPIQP---VIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccC---CCchh---HHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence 47777777777776666666666665543221 11110 123678899999994 455567779999999988764
Q ss_pred chHHHHhH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchh-----hhHHHHHHHHHhhccCCChHHHHHHHhH
Q 006912 212 PSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE-----PHLRNLFEYMLQVNKDTDDDVALEACEF 285 (626)
Q Consensus 212 ~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~l~~l~~~~~~~~~~~~~~v~~~a~~~ 285 (626)
.....--+ ...+|.+++++.+++.++|..+..+|+.++...+..-. ..++.++..+.+. ..+-++.+.+-..
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss--~~~ismlRn~TWt 224 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS--AIHISMLRNATWT 224 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc--cchHHHHHHhHHH
Confidence 32211000 13478888989999999999999999998876543211 1223344333311 1223456677778
Q ss_pred HHHhhccC---CcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCcccc
Q 006912 286 WHSYFEAQ---LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIV 362 (626)
Q Consensus 286 l~~l~~~~---~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (626)
|+.+|+.+ ..++. +.+.+|++.+.+-..+.+
T Consensus 225 LSNlcRGknP~P~w~~----isqalpiL~KLiys~D~e------------------------------------------ 258 (526)
T COG5064 225 LSNLCRGKNPPPDWSN----ISQALPILAKLIYSRDPE------------------------------------------ 258 (526)
T ss_pred HHHhhCCCCCCCchHH----HHHHHHHHHHHHhhcCHH------------------------------------------
Confidence 89999872 22332 345555554443222111
Q ss_pred ccccHHHHHHHHHHHHHhhcCc---chHH-hHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH-HHHHHH
Q 006912 363 NVWNLRKCSAAALDVLSNVFGD---EILP-TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAF 437 (626)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~---~~~~-~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~ 437 (626)
+-..|.++++.++....+ .+++ -+.+.+.+.+.+++ ..+...++..+|.+..+......-.+ -..++.
T Consensus 259 ----vlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~s---a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a 331 (526)
T COG5064 259 ----VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES---AKIQTPALRSVGNIVTGSDDQTQVIINCGALKA 331 (526)
T ss_pred ----HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcc---ccccCHHHHhhcCeeecCccceehheecccHHH
Confidence 233467777776654432 1121 34567888898988 88899999999999887643221111 124566
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh--ccccc
Q 006912 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELA 515 (626)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~--~~~~~ 515 (626)
+...|.++...+|..|||+++++...-.+. .....-..++|.++..|......++..||+|+.+....+ .+++.
T Consensus 332 ~~~lLs~~ke~irKEaCWTiSNITAGnteq----iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~i 407 (526)
T COG5064 332 FRSLLSSPKENIRKEACWTISNITAGNTEQ----IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDII 407 (526)
T ss_pred HHHHhcChhhhhhhhhheeecccccCCHHH----HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHH
Confidence 667788888999999999999987432221 112223467888888888878999999999999988776 24444
Q ss_pred chH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 006912 516 PRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (626)
Q Consensus 516 ~~l--~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~ 551 (626)
.|+ ..+++.|..+++-.+.+..+.+++|+-.+.+..
T Consensus 408 ryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~G 445 (526)
T COG5064 408 RYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVG 445 (526)
T ss_pred HHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhh
Confidence 443 356667777777777777787888888887543
No 51
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=4.4e-08 Score=98.11 Aligned_cols=188 Identities=15% Similarity=0.218 Sum_probs=131.5
Q ss_pred CChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhc
Q 006912 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (626)
Q Consensus 86 l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~ 165 (626)
++|+-...+-.-++.+|+++.+.+|+.+..++..++-.+ |+....-+|.+.+-+.++||.+..+|+.++.++++..|..
T Consensus 137 vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 137 VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 567777888889999999999999999998888888765 4555666889999999999999999999999999887754
Q ss_pred cccCCCCCccchhhhhHHHHHHhcCCC--ChHHHHHHHHHHHHHHhccc-------------------------------
Q 006912 166 LDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMP------------------------------- 212 (626)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~------------------------------- 212 (626)
.. .+-|.|+..+.+. ++ +-...++.|+.+...-|
T Consensus 216 yL------------~LAP~ffkllttSsNNW-mLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVV 282 (877)
T KOG1059|consen 216 YL------------QLAPLFYKLLVTSSNNW-VLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVV 282 (877)
T ss_pred cc------------cccHHHHHHHhccCCCe-ehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHhe
Confidence 21 2233333333221 11 11222222222222211
Q ss_pred ---------hHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHH
Q 006912 213 ---------SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEAC 283 (626)
Q Consensus 213 ---------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~ 283 (626)
+. ...+.-.++.|..++.|.+++.+...+-++..+...+|..+..|- +.+++++.|.|+++|..|+
T Consensus 283 a~s~s~g~~d~-~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k----dlIlrcL~DkD~SIRlrAL 357 (877)
T KOG1059|consen 283 AVSMSSGMSDH-SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK----DLILRCLDDKDESIRLRAL 357 (877)
T ss_pred eehhccCCCCc-HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH----HHHHHHhccCCchhHHHHH
Confidence 11 011112245555567778888888899999999998888765544 4566789999999999999
Q ss_pred hHHHHhhcc
Q 006912 284 EFWHSYFEA 292 (626)
Q Consensus 284 ~~l~~l~~~ 292 (626)
+.+..+...
T Consensus 358 dLl~gmVsk 366 (877)
T KOG1059|consen 358 DLLYGMVSK 366 (877)
T ss_pred HHHHHHhhh
Confidence 999998765
No 52
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6.1e-08 Score=101.64 Aligned_cols=445 Identities=15% Similarity=0.124 Sum_probs=257.3
Q ss_pred hHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhhchhccc
Q 006912 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLD 167 (626)
Q Consensus 89 ~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~-~~~~r~~~l~~l~~l~~~~~~~~~ 167 (626)
+..+.+...|+..+++.+..||..+|+.++.+..+.++.--.+++..++.++.-. ++...++++.+|+++...
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r------ 410 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR------ 410 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc------
Confidence 5667888889999999999999999999999999987555566777777755432 467788999999988763
Q ss_pred cCCCCCc-cchhhhhHHHHHHhcCC--------CChHHHHHHHHHHHHHHh-ccchHHHHhHHHHHHHHHH-hcCCCCHH
Q 006912 168 SDVPGLA-ECPINIFLPRLLQFFQS--------PHTSLRKLSLGSVNQFIM-LMPSALFVSMDQYLQGLFL-LSNDPSAE 236 (626)
Q Consensus 168 ~~~~~~~-~~~~~~il~~l~~~l~~--------~~~~vr~~al~~l~~~~~-~~~~~~~~~~~~~l~~l~~-~~~~~~~~ 236 (626)
|++ ...+..++|.+..++.= ....||.+|+-....+.. +-|..+.+.+..+...+.. .+-|++-+
T Consensus 411 ----GlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevn 486 (1133)
T KOG1943|consen 411 ----GLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVN 486 (1133)
T ss_pred ----CCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhh
Confidence 111 23467889988887742 345799999998888885 4566666666556655544 56688999
Q ss_pred HHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhh-hcc
Q 006912 237 VRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLS-NMI 315 (626)
Q Consensus 237 ~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~-~l~ 315 (626)
+|..|..++.+.+...+..-.. -+++.. ...-.-.-|. .++..++.. ......+...++..++. .++
T Consensus 487 cRRAAsAAlqE~VGR~~n~p~G--i~Lis~----~dy~sV~~rs---Ncy~~l~~~---ia~~~~y~~~~f~~L~t~Kv~ 554 (1133)
T KOG1943|consen 487 CRRAASAALQENVGRQGNFPHG--ISLIST----IDYFSVTNRS---NCYLDLCVS---IAEFSGYREPVFNHLLTKKVC 554 (1133)
T ss_pred HhHHHHHHHHHHhccCCCCCCc--hhhhhh----cchhhhhhhh---hHHHHHhHH---HHhhhhHHHHHHHHHHhcccc
Confidence 9999999999998775543110 011110 0000001122 223333332 11122222333333321 111
Q ss_pred cCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHH
Q 006912 316 YADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQ 395 (626)
Q Consensus 316 ~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~ 395 (626)
. |+ -.+|..++.+|..++..-++.+....+|.+.
T Consensus 555 H-------Wd---------------------------------------~~irelaa~aL~~Ls~~~pk~~a~~~L~~ll 588 (1133)
T KOG1943|consen 555 H-------WD---------------------------------------VKIRELAAYALHKLSLTEPKYLADYVLPPLL 588 (1133)
T ss_pred c-------cc---------------------------------------HHHHHHHHHHHHHHHHhhHHhhcccchhhhh
Confidence 0 10 1368889999999999888876656666666
Q ss_pred HhhcCCCCCChhHHHHHHHHHHHHHccCccc--hhh-hHHHHH---HHHhhhcCC----C--chHHHHHHHHHHHHHHHH
Q 006912 396 AKLSASGDEAWKDREAAVLALGAIAEGCIKG--LYP-HLSEIV---AFLIPLLDD----K--FPLIRSISCWTLSRFSKF 463 (626)
Q Consensus 396 ~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~--~~~-~l~~l~---~~l~~~l~d----~--~~~vr~~a~~~l~~l~~~ 463 (626)
...-+++ ...|++...+.|.++..+..- +.. ..+.-+ +.+++.+.| . ....|.+.+..+.++...
T Consensus 589 d~~ls~~---~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s 665 (1133)
T KOG1943|consen 589 DSTLSKD---ASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLS 665 (1133)
T ss_pred hhhcCCC---hHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhc
Confidence 6666666 899999999999988766321 111 111111 111222211 1 134556665555555432
Q ss_pred HhhhcCCCchhhhHHH-HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhH-HHHHHHH
Q 006912 464 IVQDIGHQNGREQFEK-VLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR-RNLRIVY 541 (626)
Q Consensus 464 ~~~~~~~~~~~~~~~~-ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~-~~~~~~~ 541 (626)
-... ..+.+.. .-..+.+++.+++ .+|..|.++++.++...-..=...-..++...+..+.+... ..++...
T Consensus 666 ~~~~-----~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~ 739 (1133)
T KOG1943|consen 666 KDRL-----FQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLI 739 (1133)
T ss_pred cchh-----HHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHH
Confidence 1110 1112111 2222233333445 89999999999999875211111112455555655555533 3333433
Q ss_pred HHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCC-CCc-cchHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHH
Q 006912 542 DAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNS-DKD-LFPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQT 617 (626)
Q Consensus 542 ~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~-~~~~l~~~~~l~~~~g~-~f~~~~~~i~~~l~~~l~~ 617 (626)
-+++.+ +.+...-++-+.+...+ +...+.+ ..+ ....+..+..+++.++. .|..-..+++..+++.|++
T Consensus 740 lal~~l----p~~~i~~~~q~~lc~~~---l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~ldd 811 (1133)
T KOG1943|consen 740 LALGVL----PSELIHRHLQEKLCKLV---LELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDD 811 (1133)
T ss_pred HHHccC----cHHhhchHHHHHHHHHH---hccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 343333 22221112333333222 2222211 111 23567777888888874 6777889999999999876
No 53
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.24 E-value=1e-09 Score=99.87 Aligned_cols=351 Identities=13% Similarity=0.105 Sum_probs=225.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHh-hccCChhHHHHHHHhHhhhhhC-CcHHHHHHHHHHHHHHHhhcCcCc----hHHHHHH
Q 006912 62 GKSVEIRQAAGLLLKNNLRTA-YKSMSPSNQQYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLGGIAG----WLELLQA 135 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~~~-~~~l~~~~~~~i~~~L~~~l~~-~~~~vr~~~~~~l~~i~~~~~~~~----~~~ll~~ 135 (626)
+.+-+..+.|..-+++.+++. -+.+.+-....+...+++.+.+ .......-++-++.+|+.....+. -.+-.|.
T Consensus 82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPl 161 (526)
T COG5064 82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPL 161 (526)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHH
Confidence 445566777777787777543 3346666667788888888854 455677788999999986532211 1345788
Q ss_pred HHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCC--hHHHHHHHHHHHHHHhc-cc
Q 006912 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH--TSLRKLSLGSVNQFIML-MP 212 (626)
Q Consensus 136 l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~--~~vr~~al~~l~~~~~~-~~ 212 (626)
+++++.+++..+|+.++.+|+.+....+..- .+ -.....+..++..+.++. ..+-..+-..|..++.. .|
T Consensus 162 fiqlL~s~~~~V~eQavWALGNiAGDS~~~R-D~------vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP 234 (526)
T COG5064 162 FIQLLSSTEDDVREQAVWALGNIAGDSEGCR-DY------VLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNP 234 (526)
T ss_pred HHHHHcCchHHHHHHHHHHhccccCCchhHH-HH------HHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCC
Confidence 9999999999999999999999987655421 11 112556677777777654 46777888899999864 45
Q ss_pred hHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhccCCChHHHHHHHhHHHHhhc
Q 006912 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (626)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~ 291 (626)
......+...++.|.+++...++++...||.++..+.....+.+...+. .+..-+++.+.+++..+..-++...+.+..
T Consensus 235 ~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT 314 (526)
T COG5064 235 PPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT 314 (526)
T ss_pred CCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee
Confidence 5555667788999999999889999999999999988776654433222 111112223333332222222222222211
Q ss_pred cCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 006912 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (626)
Q Consensus 292 ~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a 371 (626)
. . |.. +
T Consensus 315 G--------------------------~--------------------------------D~Q-----------T----- 320 (526)
T COG5064 315 G--------------------------S--------------------------------DDQ-----------T----- 320 (526)
T ss_pred c--------------------------C--------------------------------ccc-----------e-----
Confidence 1 0 000 0
Q ss_pred HHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHH-HHHHHHhhhcCCCchHHH
Q 006912 372 AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIR 450 (626)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr 450 (626)
.+.-.+ -.++.+..++.++. -..|..+|+.++.+..+..+.+...++ .++|-++..+...+..+|
T Consensus 321 -----qviI~~------G~L~a~~~lLs~~k---e~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~k 386 (526)
T COG5064 321 -----QVIINC------GALKAFRSLLSSPK---ENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIK 386 (526)
T ss_pred -----ehheec------ccHHHHHHHhcChh---hhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 000011 24456666788887 789999999999999987666543332 478899999998899999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchhhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Q 006912 451 SISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (626)
Q Consensus 451 ~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (626)
..|||++++.....-.. ++.-.|+ +.++..+...+.-.+-.+-..++.++.++++..
T Consensus 387 KEACWAisNatsgg~~~---PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~G 445 (526)
T COG5064 387 KEACWAISNATSGGLNR---PDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVG 445 (526)
T ss_pred HHHHHHHHhhhccccCC---chHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhh
Confidence 99999999887654321 1222222 233445555554333345556688888887653
No 54
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.24 E-value=3.6e-08 Score=101.96 Aligned_cols=380 Identities=14% Similarity=0.097 Sum_probs=235.3
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhc--CC-----ChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHH
Q 006912 20 LLEQQISPSSTADKSQIWQQLQQYSQ--FP-----DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (626)
Q Consensus 20 ~l~~~~s~d~~~~r~~a~~~L~~~~~--~p-----~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~ 92 (626)
++..+.+.+.+ ....+.+.|..+-+ .| ++...+...|. +.++.+|..++..+++.+...-....--...
T Consensus 43 lf~~L~~~~~e-~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~---h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNRE-QVELICDILKRLLSALSPDSLLPQYQPFLQRGLT---HPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 34444445556 77777777777532 23 34444444443 7889999999999887764321111111224
Q ss_pred HHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHH-----HHHHHHHhccCChhHHhHHHHHHHHHhhhchhccc
Q 006912 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLEL-----LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (626)
Q Consensus 93 ~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l-----l~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~ 167 (626)
.+...++.++.+++..|.+.++.++..+++.. .....+ ...|.+.+...+..+|...+.++..++...++...
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 56778888999999999999999999999763 233334 77788888776778888899999888877665432
Q ss_pred cCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHH--HHHHHHHHhcCCCCH-----H-HHH
Q 006912 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDPSA-----E-VRK 239 (626)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~-----~-~~~ 239 (626)
. -.-.++++.++..+.+.|.-++..+++.+..++.. +.. ..++. .+++.+.+.+.+.+. . .-.
T Consensus 197 ~-------~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~~g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~ 267 (503)
T PF10508_consen 197 A-------VVNSGLLDLLLKELDSDDILVQLNALELLSELAET-PHG-LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLP 267 (503)
T ss_pred H-------HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-hhH-HHHHHhCCHHHHHHHHHhccccCCcccchhhh
Confidence 1 01145899999999999999999999999999983 322 22221 456666665543221 1 123
Q ss_pred HHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhH----HhhhhhhHHHHhhhcc
Q 006912 240 LVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL----KEFLPRLVPVLLSNMI 315 (626)
Q Consensus 240 ~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~----~~~l~~li~~l~~~l~ 315 (626)
..+..++.++...|..+....+.++..+.......|...+..|++.|+.++........+ .+.+..++........
T Consensus 268 g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~ 347 (503)
T PF10508_consen 268 GRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIK 347 (503)
T ss_pred hHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhc
Confidence 344666667765565555566778877777788888889999999999998763222222 1222333333222222
Q ss_pred cCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc----chHH---
Q 006912 316 YADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILP--- 388 (626)
Q Consensus 316 ~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~--- 388 (626)
.... .+|..+..++..+....+. ++..
T Consensus 348 ~~~~----------------------------------------------~lk~r~l~al~~il~~~~~~~~~~i~~~~~ 381 (503)
T PF10508_consen 348 SGST----------------------------------------------ELKLRALHALASILTSGTDRQDNDILSITE 381 (503)
T ss_pred CCch----------------------------------------------HHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 1111 1344444444444322211 0100
Q ss_pred ---------hHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccch-hhhHHHHHHHHhhhcCCCchHHHHHHHHHHH
Q 006912 389 ---------TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLDDKFPLIRSISCWTLS 458 (626)
Q Consensus 389 ---------~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~-~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~ 458 (626)
.....+...++.|= +..|.|++..+..++.+..... --..+.++.+++..-.+++...+++=..++.
T Consensus 382 ~w~~~~~~~~~~~~l~~~~~qPF---~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~ 458 (503)
T PF10508_consen 382 SWYESLSGSPLSNLLMSLLKQPF---PELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIK 458 (503)
T ss_pred HHHHHhcCCchHHHHHHHhcCCc---hHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHH
Confidence 01115566667776 7899999999999988752111 1122346677777666677777666655555
Q ss_pred HHHHH
Q 006912 459 RFSKF 463 (626)
Q Consensus 459 ~l~~~ 463 (626)
++.+.
T Consensus 459 ~l~~~ 463 (503)
T PF10508_consen 459 ALAKS 463 (503)
T ss_pred HHHhc
Confidence 55543
No 55
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=8.7e-08 Score=96.98 Aligned_cols=421 Identities=13% Similarity=0.113 Sum_probs=244.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHH
Q 006912 19 RLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILAR-AEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS 96 (626)
Q Consensus 19 ~~l~~~~s~d~~~~r~~a~~~L~~~~~-~p~~~~~l~~il~~-~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~ 96 (626)
++.++..+.+.+ +|+-..-+|.++.+ +|+..-.-+..++. .++.++.+|-.|...+... +-..+.| -+.-
T Consensus 75 ~VVKNVaskn~E-VKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsI---Rvp~IaP----I~ll 146 (968)
T KOG1060|consen 75 AVVKNVASKNIE-VKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSI---RVPMIAP----IMLL 146 (968)
T ss_pred HHHHHhhccCHH-HHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhc---chhhHHH----HHHH
Confidence 344444555666 66666666666543 56532211222221 1356666676665554310 0011112 2222
Q ss_pred hHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccc
Q 006912 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (626)
Q Consensus 97 ~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~ 176 (626)
.+-++..++.+.||+.+|++|-.+-..+ +++..++...+..++.|.++.+.-.|+.++..+|-.--+
T Consensus 147 AIk~~~~D~s~yVRk~AA~AIpKLYsLd-~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerld------------ 213 (968)
T KOG1060|consen 147 AIKKAVTDPSPYVRKTAAHAIPKLYSLD-PEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLD------------ 213 (968)
T ss_pred HHHHHhcCCcHHHHHHHHHhhHHHhcCC-hhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHH------------
Confidence 3333556788999999999988887776 344458888888888888888888888887766543322
Q ss_pred hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhc-cchH----------------------------HHHhHHHHHHHHH
Q 006912 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML-MPSA----------------------------LFVSMDQYLQGLF 227 (626)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~-~~~~----------------------------~~~~~~~~l~~l~ 227 (626)
.+..-...+.+++.|-+.==+.-.++.|..++.. +|+. ..+....+++..-
T Consensus 214 LIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stk 293 (968)
T KOG1060|consen 214 LIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTK 293 (968)
T ss_pred HhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhcc
Confidence 1233445566666664332244455555555532 2211 0122333445555
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhH
Q 006912 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLV 307 (626)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li 307 (626)
.++...++.+...+++++..++... ....|...++..+... .+++.-.+..+..++.. .+..+.||+.++.
T Consensus 294 pLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~--~~~lF~P~lKsFf 364 (968)
T KOG1060|consen 294 PLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRSN-REVQYVVLQNIATISIK--RPTLFEPHLKSFF 364 (968)
T ss_pred HHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhc--chhhhhhhhhceE
Confidence 5566667777777777776666442 2234455555544332 22455556666666654 4555666655421
Q ss_pred HHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchH
Q 006912 308 PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL 387 (626)
Q Consensus 308 ~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 387 (626)
-. .. | .......=|..++......-+
T Consensus 365 v~------------------------------------ss----D--------------p~~vk~lKleiLs~La~esni 390 (968)
T KOG1060|consen 365 VR------------------------------------SS----D--------------PTQVKILKLEILSNLANESNI 390 (968)
T ss_pred ee------------------------------------cC----C--------------HHHHHHHHHHHHHHHhhhccH
Confidence 10 00 0 112233344555555555556
Q ss_pred HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhh
Q 006912 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (626)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (626)
..+++-++.++.+++ .....+++.++|..+..... .-+..+..++..+.+.+..|...++..|.++...-+
T Consensus 391 ~~ILrE~q~YI~s~d---~~faa~aV~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p-- 461 (968)
T KOG1060|consen 391 SEILRELQTYIKSSD---RSFAAAAVKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP-- 461 (968)
T ss_pred HHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh--
Confidence 788899999999988 67777888889988876542 234467777888887788899999898888886433
Q ss_pred cCCCchhhhHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006912 468 IGHQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDA 543 (626)
Q Consensus 468 ~~~~~~~~~~~~ll~~l~~~l~d~-~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~ 543 (626)
.....++..+.+.++.- .+.-|....|.++..|+..+ ...+.++..+.+-+.+..+++.-.++..
T Consensus 462 -------~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vp----ri~PDVLR~laksFs~E~~evKlQILnL 527 (968)
T KOG1060|consen 462 -------AEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVP----RIAPDVLRKLAKSFSDEGDEVKLQILNL 527 (968)
T ss_pred -------HHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcc----hhchHHHHHHHHhhccccchhhHHHHHh
Confidence 22334555555555432 36667777888888877632 3456666666666666555555444443
No 56
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=1.2e-06 Score=93.43 Aligned_cols=370 Identities=17% Similarity=0.188 Sum_probs=227.3
Q ss_pred hHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccc-cCCCCCccchhhhhHHHHHHhcCCCCh------HHHHHHH
Q 006912 129 WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD-SDVPGLAECPINIFLPRLLQFFQSPHT------SLRKLSL 201 (626)
Q Consensus 129 ~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~-~~~~~~~~~~~~~il~~l~~~l~~~~~------~vr~~al 201 (626)
++.+.+.+...+.- .+..|...+..|..+++...+.-. .+-.++..+....++|.+++...++.. ..|...+
T Consensus 516 F~~la~~l~~al~~-~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L 594 (1176)
T KOG1248|consen 516 FTDLAPILGAALLK-RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVL 594 (1176)
T ss_pred HHHHHHHHHHHHhc-chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHH
Confidence 45555555555543 347888889999988887521100 000112235568899999998877533 3455555
Q ss_pred HHHH-HHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHH
Q 006912 202 GSVN-QFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRK-LVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVA 279 (626)
Q Consensus 202 ~~l~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~ 279 (626)
.... .++...|..+...+ ...+.....+.++.++. .....|..++...+..-..++..++...-...+.....++
T Consensus 595 ~~i~~~~~~~t~~dv~~~l---~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQ 671 (1176)
T KOG1248|consen 595 EIIRVDYFTVTPTDVVGSL---KDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQ 671 (1176)
T ss_pred HHHHHHHhhcccHHHHHHH---HHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHH
Confidence 5544 44444454444333 33444444444433332 2233333333332222223344444222223344567788
Q ss_pred HHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCc
Q 006912 280 LEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (626)
Q Consensus 280 ~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (626)
..+.+.|..+++.+........++..+...+...++...
T Consensus 672 kK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~----------------------------------------- 710 (1176)
T KOG1248|consen 672 KKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS----------------------------------------- 710 (1176)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc-----------------------------------------
Confidence 999999999887643333344444444444433332111
Q ss_pred cccccccHHHHHHHHHHHHHhhcCcch---HHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHH--ccC-ccc---hhhh
Q 006912 360 DIVNVWNLRKCSAAALDVLSNVFGDEI---LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA--EGC-IKG---LYPH 430 (626)
Q Consensus 360 ~~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~--~~~-~~~---~~~~ 430 (626)
...+..+..|+..+.+..+.+. ++..++-+.=..+..+ ...|..+..+|-.++ ... ... ....
T Consensus 711 -----~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n---~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~ 782 (1176)
T KOG1248|consen 711 -----SPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVN---VKARRNAFALLVFIGAIQSSLDDGNEPASAI 782 (1176)
T ss_pred -----hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccccc---HHHHhhHHHHHHHHHHHHhhhcccccchHHH
Confidence 1357778899999999998543 4444443333334444 666666666665555 211 111 1235
Q ss_pred HHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Q 006912 431 LSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (626)
Q Consensus 431 l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (626)
+...++.+...+-.+.++++...+.+++.+...+.+. ....++..++..+.-.+..+++.++.+|...+..++...
T Consensus 783 lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~----ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~ 858 (1176)
T KOG1248|consen 783 LNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI----LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF 858 (1176)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC
Confidence 6667777777777777777777677887777666554 356788889999999999999999999999999999998
Q ss_pred cc-cccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc
Q 006912 511 AE-ELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (626)
Q Consensus 511 ~~-~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~ 555 (626)
++ -+.+|++.+++.++....+.....+..+--.+-.+++.+|.+.
T Consensus 859 pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~e 904 (1176)
T KOG1248|consen 859 PEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEE 904 (1176)
T ss_pred CHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHH
Confidence 75 4689999999999998887777777777777888888887543
No 57
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.21 E-value=2.6e-09 Score=112.41 Aligned_cols=308 Identities=16% Similarity=0.208 Sum_probs=208.0
Q ss_pred HHHHHHHHhcc-CChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhc
Q 006912 132 LLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (626)
Q Consensus 132 ll~~l~~~l~~-~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (626)
+++.+..++.+ .....+..|+..|..+.....++ ..++.++|.++-++.|+..+||..|+.++..++..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de----------~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~ 492 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDE----------VKLDRVLPYFVHLLMDSEADVRATALETLTELLAL 492 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH----------HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 35666666665 34567788999999888877764 34789999999999999999999999999887754
Q ss_pred c---chHHHHhHHH-HHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhh-ccCCChHHHHHHHh
Q 006912 211 M---PSALFVSMDQ-YLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV-NKDTDDDVALEACE 284 (626)
Q Consensus 211 ~---~~~~~~~~~~-~l~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~v~~~a~~ 284 (626)
. |..-...+++ ++|.|-.++.| ....+|.....+|..++.....++.- -...=..+ ..+.+.+
T Consensus 493 Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~----~q~~~~~g~~n~~nse------- 561 (1431)
T KOG1240|consen 493 VRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLEL----TQELRQAGMLNDPNSE------- 561 (1431)
T ss_pred ccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHH----HHHHHhcccccCcccc-------
Confidence 3 3322223333 36777778877 55668888888998888765554321 00000001 1122221
Q ss_pred HHHHhhcc--CCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCcccc
Q 006912 285 FWHSYFEA--QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIV 362 (626)
Q Consensus 285 ~l~~l~~~--~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (626)
...+. ....+.+...+++.+..++ .+.
T Consensus 562 ---t~~~~~~~~~~~~L~~~V~~~v~sLl---sd~--------------------------------------------- 590 (1431)
T KOG1240|consen 562 ---TAPEQNYNTELQALHHTVEQMVSSLL---SDS--------------------------------------------- 590 (1431)
T ss_pred ---cccccccchHHHHHHHHHHHHHHHHH---cCC---------------------------------------------
Confidence 01110 0011111122222222221 110
Q ss_pred ccccHHHHHHHHHHHHHhhcCc-chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccc-hhhhHHHHHHHHhh
Q 006912 363 NVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIP 440 (626)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~-~~~~l~~l~~~l~~ 440 (626)
.-.+|++-.+.+..++..+|. ..-+.+++++..++++.| |..|-|-...+..++...+.. ..++ ++|.+.+
T Consensus 591 -~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkD---w~LR~aFfdsI~gvsi~VG~rs~sey---llPLl~Q 663 (1431)
T KOG1240|consen 591 -PPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKD---WRLRGAFFDSIVGVSIFVGWRSVSEY---LLPLLQQ 663 (1431)
T ss_pred -chHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCcc---HHHHHHHHhhccceEEEEeeeeHHHH---HHHHHHH
Confidence 014788888889999999987 555688999999999999 999999888777666655432 3333 6999999
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcc-----ccc
Q 006912 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-----ELA 515 (626)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~-----~~~ 515 (626)
.+.|..+.|-..|+.++..+++.-- ..+.++..++..+...+-.+|--||.+++..|..+.+.... .+.
T Consensus 664 ~ltD~EE~Viv~aL~~ls~Lik~~l------l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~ 737 (1431)
T KOG1240|consen 664 GLTDGEEAVIVSALGSLSILIKLGL------LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLM 737 (1431)
T ss_pred hccCcchhhHHHHHHHHHHHHHhcc------cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEee
Confidence 9999999999999999999997421 34677788888888888889999999999999999887642 244
Q ss_pred chHHHHHHH
Q 006912 516 PRLEIILQH 524 (626)
Q Consensus 516 ~~l~~i~~~ 524 (626)
|++.+++..
T Consensus 738 P~irpfl~~ 746 (1431)
T KOG1240|consen 738 PLIRPFLER 746 (1431)
T ss_pred hhhHHhhhc
Confidence 555555443
No 58
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.1e-06 Score=89.63 Aligned_cols=210 Identities=15% Similarity=0.142 Sum_probs=138.5
Q ss_pred CChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhc
Q 006912 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (626)
Q Consensus 86 l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~ 165 (626)
.++|....+-+.+-+.++..++.||+.|+.|...+.++. |+...-+++...+.+.+.+..+..+++..+..+|+..++.
T Consensus 135 ~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~ 213 (866)
T KOG1062|consen 135 CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDA 213 (866)
T ss_pred CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHH
Confidence 466777777788888888999999999999999999885 4555667788888888888889899999999999987665
Q ss_pred cccCCCCCccchhhhhHHHHHHhcCC---------------CChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHh-
Q 006912 166 LDSDVPGLAECPINIFLPRLLQFFQS---------------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLL- 229 (626)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~---------------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~- 229 (626)
+. ....+++.|+..|++ ++|-++...++.|.-+.+..++. .+.|.+++..+...
T Consensus 214 l~---------~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~da-Sd~M~DiLaqvatnt 283 (866)
T KOG1062|consen 214 LS---------YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADA-SDLMNDILAQVATNT 283 (866)
T ss_pred HH---------HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHHhcc
Confidence 42 123344444444421 36777888888887776664322 23333333333221
Q ss_pred ------------------cC-CCCHHHHHHHHHHHHHHHhhCccchhh---------------hHHHHHHHHHhhccCCC
Q 006912 230 ------------------SN-DPSAEVRKLVCAAFNLLIEVRPSFLEP---------------HLRNLFEYMLQVNKDTD 275 (626)
Q Consensus 230 ------------------~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~---------------~l~~l~~~~~~~~~~~~ 275 (626)
+. .++...|..|+.+|.++.......++- .++.--..++.|++|.|
T Consensus 284 dsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD 363 (866)
T KOG1062|consen 284 DSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPD 363 (866)
T ss_pred cccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCc
Confidence 11 244567777777777776544332210 11122235677899999
Q ss_pred hHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHH
Q 006912 276 DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVL 310 (626)
Q Consensus 276 ~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l 310 (626)
..+++.|++....+... +.++.++..++..+
T Consensus 364 ~SIkrralELs~~lvn~----~Nv~~mv~eLl~fL 394 (866)
T KOG1062|consen 364 VSIKRRALELSYALVNE----SNVRVMVKELLEFL 394 (866)
T ss_pred HHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHH
Confidence 99999999999988765 33444444444443
No 59
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=5.1e-07 Score=96.06 Aligned_cols=247 Identities=16% Similarity=0.190 Sum_probs=186.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhh--CccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHH
Q 006912 231 NDPSAEVRKLVCAAFNLLIEV--RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVP 308 (626)
Q Consensus 231 ~~~~~~~~~~~~~~l~~l~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~ 308 (626)
+..+..+++.+++.|..+... .......++..+.+.+...+++.....+...+.+|..+.+. .......++.++++
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~--~~~e~~~~i~k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKL--LSAEHCDLIPKLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHH
Confidence 344788999999999999887 22355667888888888888888888888888888888775 22334455666676
Q ss_pred HHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHH--hhc---C
Q 006912 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS--NVF---G 383 (626)
Q Consensus 309 ~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~--~~~---~ 383 (626)
.++-.++.... ..|+.|..||..++ ... |
T Consensus 742 EvIL~~Ke~n~----------------------------------------------~aR~~Af~lL~~i~~i~~~~d~g 775 (1176)
T KOG1248|consen 742 EVILSLKEVNV----------------------------------------------KARRNAFALLVFIGAIQSSLDDG 775 (1176)
T ss_pred HHHHhcccccH----------------------------------------------HHHhhHHHHHHHHHHHHhhhccc
Confidence 65544432110 25788888888887 332 3
Q ss_pred c----chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccch-hhhHHHHHHHHhhhcCCCchHHHHHHHHHHH
Q 006912 384 D----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLDDKFPLIRSISCWTLS 458 (626)
Q Consensus 384 ~----~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~-~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~ 458 (626)
+ ..+..+++.+...+.... ...+...+.+++.+.......+ .+.+..++..+...+...++.++.+|+.++.
T Consensus 776 ~e~~~~~lnefl~~Isagl~gd~---~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fik 852 (1176)
T KOG1248|consen 776 NEPASAILNEFLSIISAGLVGDS---TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIK 852 (1176)
T ss_pred ccchHHHHHHHHHHHHhhhcccH---HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2 356777777777766554 5666665888888777655444 4788889999999999999999999999999
Q ss_pred HHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhhh
Q 006912 459 RFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-EELAPRLEIILQHLMMAFGKY 532 (626)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~-~~~~~~l~~i~~~l~~~l~~~ 532 (626)
.++..++.. ....+.+.+++.++...++..-.+|...-..|..+++.+| +.+.+|+|.-...++..+.+.
T Consensus 853 vlv~~~pe~----~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK~ 923 (1176)
T KOG1248|consen 853 VLVYKFPEE----CLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRKR 923 (1176)
T ss_pred HHHHcCCHH----HHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHHH
Confidence 999888876 5788999999999998888889999999999999999997 567788886666665555443
No 60
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2.3e-07 Score=94.55 Aligned_cols=405 Identities=18% Similarity=0.179 Sum_probs=227.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHh
Q 006912 20 LLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSE 97 (626)
Q Consensus 20 ~l~~~~s~d~~~~r~~a~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~ 97 (626)
++......|-+ .++-...+|..+.+ +|+-.......+..+ ++.++.+|..|...+... -.+...+++...
T Consensus 54 vvk~~~T~dle-lKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l-------~v~~i~ey~~~P 125 (734)
T KOG1061|consen 54 VVKCMQTRDLE-LKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL-------RVDKITEYLCDP 125 (734)
T ss_pred HHhhcccCCch-HHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE-------eehHHHHHHHHH
Confidence 33444444555 66666666666543 565444344333322 355666676665444211 123455677888
Q ss_pred HhhhhhCCcHHHHHHHHHHHHHHHhhcCc-CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCC----
Q 006912 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG---- 172 (626)
Q Consensus 98 L~~~l~~~~~~vr~~~~~~l~~i~~~~~~-~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~---- 172 (626)
+..++++.++.+|+.++-+++.+...+.. ..-.++++.+...+.|+++.+...|+.+|..+.+..++........
T Consensus 126 l~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~ 205 (734)
T KOG1061|consen 126 LLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLIN 205 (734)
T ss_pred HHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHH
Confidence 89999999999999999999988876532 2336788889999999999999999999999988776421110000
Q ss_pred -Cc-------------------------cchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHH
Q 006912 173 -LA-------------------------ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGL 226 (626)
Q Consensus 173 -~~-------------------------~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l 226 (626)
++ ......++..+...+++.++.|...+.+.+...+...+......+..+-+.+
T Consensus 206 ~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl 285 (734)
T KOG1061|consen 206 KLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPL 285 (734)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 00 0011122222233333333333444444444444333221111111222333
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhh
Q 006912 227 FLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306 (626)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~l 306 (626)
..++..+ ++....+++.++.++.+.|+.++..+..++ .+. ++--.++..=++++..++... .+.++
T Consensus 286 ~tlls~~-~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff---~ky--nDPiYvK~eKleil~~la~~~--------nl~qv 351 (734)
T KOG1061|consen 286 VTLLSSE-SEIQYVALRNINLILQKRPEILKVEIKVFF---CKY--NDPIYVKLEKLEILIELANDA--------NLAQV 351 (734)
T ss_pred eeeeccc-chhhHHHHhhHHHHHHhChHHHHhHhHeee---eec--CCchhhHHHHHHHHHHHhhHh--------HHHHH
Confidence 3333333 377777888888888888876654333211 111 111235555666666665531 12222
Q ss_pred HHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcch
Q 006912 307 VPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI 386 (626)
Q Consensus 307 i~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 386 (626)
+..+..+-.. .| ...-+.+..+++.++....+.
T Consensus 352 l~El~eYate--vD--------------------------------------------~~fvrkaIraig~~aik~e~~- 384 (734)
T KOG1061|consen 352 LAELKEYATE--VD--------------------------------------------VDFVRKAVRAIGRLAIKAEQS- 384 (734)
T ss_pred HHHHHHhhhh--hC--------------------------------------------HHHHHHHHHHhhhhhhhhhhh-
Confidence 2222111110 00 013345778888887777654
Q ss_pred HHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHHHHh
Q 006912 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIV 465 (626)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~ 465 (626)
..++..+.+.++-.. -.+...++..+..+...++.. .+.+++.+...+.. ++|..|.+-+|.+|++++.++
T Consensus 385 -~~cv~~lLell~~~~---~yvvqE~~vvi~dilRkyP~~----~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~ 456 (734)
T KOG1061|consen 385 -NDCVSILLELLETKV---DYVVQEAIVVIRDILRKYPNK----YESVVAILCENLDSLQEPEAKAALIWILGEYAERIE 456 (734)
T ss_pred -hhhHHHHHHHHhhcc---cceeeehhHHHHhhhhcCCCc----hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccC
Confidence 345555555555332 233333444555555555432 24456666555543 578899999999999999876
Q ss_pred hhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc
Q 006912 466 QDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (626)
Q Consensus 466 ~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~ 511 (626)
+. ..++..+++.+.|....||..-..|..++.-..+
T Consensus 457 ~a----------~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p 492 (734)
T KOG1061|consen 457 NA----------LELLESFLENFKDETAEVQLELLTAAIKLFLKKP 492 (734)
T ss_pred cH----------HHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCC
Confidence 43 5677888888888888898888777777654433
No 61
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=99.11 E-value=2.7e-07 Score=88.32 Aligned_cols=466 Identities=13% Similarity=0.083 Sum_probs=261.1
Q ss_pred cHHHHHHHHHHHHHHHhhc----CcCchHHHHHH---------HHHHhccCChhHHhHHHHHHHHHhhhchhcccc---C
Q 006912 106 DRHIRSTVGTIVSVVVQLG----GIAGWLELLQA---------LVTCLDSNDINHMEGAMDALSKICEDIPQVLDS---D 169 (626)
Q Consensus 106 ~~~vr~~~~~~l~~i~~~~----~~~~~~~ll~~---------l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~---~ 169 (626)
...||..+..++....+.. .-++|.-++|. +.-.+++++++.|..++.++..+.+.....+.. -
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 4567888877777776543 34677766654 233467889999999999999888765443210 0
Q ss_pred CCCCccchh-------hhhHHHHHHhcC-CCChHHHHHHHHHHHHHHhccchHHH--HhHHHHHHHHHHhcCCCCHHHHH
Q 006912 170 VPGLAECPI-------NIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALF--VSMDQYLQGLFLLSNDPSAEVRK 239 (626)
Q Consensus 170 ~~~~~~~~~-------~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~--~~~~~~l~~l~~~~~~~~~~~~~ 239 (626)
.+..|+... ......++-.+. ..++.+....++|+..+++..|-.-. ..+..+...+-..+...++.++.
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~v 168 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRV 168 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhh
Confidence 011111111 112222333332 34667888999999999998773221 12335566666677888888999
Q ss_pred HHHHHHHHHHhhCccch----------------hhhH------HHHH------HH-------------------------
Q 006912 240 LVCAAFNLLIEVRPSFL----------------EPHL------RNLF------EY------------------------- 266 (626)
Q Consensus 240 ~~~~~l~~l~~~~~~~~----------------~~~l------~~l~------~~------------------------- 266 (626)
.++-.+..++..+.-.- .+|. +++. +.
T Consensus 169 s~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~ 248 (728)
T KOG4535|consen 169 SSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLP 248 (728)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecC
Confidence 88888877765432100 0000 0000 00
Q ss_pred ---------HHhhccC--CChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCC
Q 006912 267 ---------MLQVNKD--TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDR 335 (626)
Q Consensus 267 ---------~~~~~~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~ 335 (626)
...+... .-..+|..+++.+..++++ ....+.++.++.-.+...+.....
T Consensus 249 ~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~---~~~~~~~~~~l~RvI~~~~~~~~p---------------- 309 (728)
T KOG4535|consen 249 KEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARY---FSMTQAYLMELGRVICKCMGEADP---------------- 309 (728)
T ss_pred CccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccCCCCCh----------------
Confidence 0000000 1123577777777777664 233444444444443333322111
Q ss_pred CCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchH------HhHHH-HHHHhhcCC------C
Q 006912 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL------PTLMP-VIQAKLSAS------G 402 (626)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~------~~l~~-~l~~~l~~~------~ 402 (626)
++...+..++..+...++.+.. +.... +-.-++..+ |
T Consensus 310 ------------------------------~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YD 359 (728)
T KOG4535|consen 310 ------------------------------SIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYD 359 (728)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhh
Confidence 1334466666666655532110 11111 111111111 0
Q ss_pred CCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHH
Q 006912 403 DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481 (626)
Q Consensus 403 ~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll 481 (626)
+.-.....+++.++..+.......+.+.-....+.++..+.| .+..|+.+|..+.+-+.-+-.. .....+.....
T Consensus 360 s~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~l----r~d~~fv~~aa 435 (728)
T KOG4535|consen 360 SEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCL----RQDVIFVADAA 435 (728)
T ss_pred hcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccch----hhhHHHHHHHH
Confidence 111556677788887776654433433333456667777765 5667888888887776543221 12344567777
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhcccc---c----chHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHh
Q 006912 482 MGLLKRILDTNKRVQEAACSAFATLEEEAAEEL---A----PRLEIILQHLMMAFGKY---QRRNLRIVYDAIGTLADAV 551 (626)
Q Consensus 482 ~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~---~----~~l~~i~~~l~~~l~~~---~~~~~~~~~~~l~~i~~~~ 551 (626)
..++..+.|..-.+|..+.+++++|....-..+ . .+....+..+.+.-... ++++...++++|+++.+-+
T Consensus 436 ~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl 515 (728)
T KOG4535|consen 436 NAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL 515 (728)
T ss_pred HHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH
Confidence 888888888888999999999999998763222 2 23334444443333332 3566779999999988776
Q ss_pred ccccCChhhhhhhhHHHHHHHhcC---CCCCCccchHHHHHHHHHHHhcccc--ccchHHHHHHHHHHHHHHHHhhhcCC
Q 006912 552 GFELNQPVYLDILMPPLIAKWQQL---PNSDKDLFPLLECFTSIAQALGAGF--TQFAQPVFQRCINIIQTQQLAKVSID 626 (626)
Q Consensus 552 ~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~l~~~~~l~~~~g~~f--~~~~~~i~~~l~~~l~~~~~~~~~~~ 626 (626)
..-. ++-...++..-+..+... ...-+...+++-.++++.+.=.-.| .++.+.+|+.+.+++.++-||||+|.
T Consensus 516 q~i~--~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~ 593 (728)
T KOG4535|consen 516 QPIE--KPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIR 593 (728)
T ss_pred HHhh--hccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeeh
Confidence 5321 123444444333222110 1111222466666777766422223 57999999999999999999999983
No 62
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.09 E-value=1.6e-09 Score=83.17 Aligned_cols=94 Identities=24% Similarity=0.284 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHH
Q 006912 408 DREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKR 487 (626)
Q Consensus 408 ~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~ 487 (626)
.|.+++.++..++.+++..+.++++.+++.++..+.|++++||+.||.++.++++...+. ..+++..++..+.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-----~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-----ILPYFNEIFDALCKL 76 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 589999999999999988899999999999999999999999999999999999988764 577999999999999
Q ss_pred hccCCHHHHHHHHHHHHHHH
Q 006912 488 ILDTNKRVQEAACSAFATLE 507 (626)
Q Consensus 488 l~d~~~~v~~~a~~al~~l~ 507 (626)
+.|+++.||..| ..|.+++
T Consensus 77 ~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 77 SADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HcCCchhHHHHH-HHHHHHh
Confidence 999999999866 5555543
No 63
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.07 E-value=2.5e-08 Score=105.28 Aligned_cols=286 Identities=14% Similarity=0.103 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHHhhc-CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHH
Q 006912 108 HIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (626)
Q Consensus 108 ~vr~~~~~~l~~i~~~~-~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~ 186 (626)
.-|..+..++..+.... .......++|.+..++.++..++|..|+.+|..++..+.+.-..+. . -..+.++|.+-
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da-n---iF~eYlfP~L~ 513 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA-N---IFPEYLFPHLN 513 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc-h---hhHhhhhhhhH
Confidence 34455666666666653 4567789999999999999999999999999988877655322211 1 12477888888
Q ss_pred HhcCC-CChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHhhCc-cchhhhHHH
Q 006912 187 QFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL--LSNDPSAEVRKLVCAAFNLLIEVRP-SFLEPHLRN 262 (626)
Q Consensus 187 ~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~ 262 (626)
.++.| ....||.+-..+|..++...- .+......+.. ..++++.+. ..+... .......+.
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~-----rFle~~q~~~~~g~~n~~nset----------~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAY-----RFLELTQELRQAGMLNDPNSET----------APEQNYNTELQALHHT 578 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHH-----HHHHHHHHHHhcccccCccccc----------ccccccchHHHHHHHH
Confidence 88888 456788888888888775422 11122222222 244444330 111111 111111222
Q ss_pred HHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcc
Q 006912 263 LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPR 342 (626)
Q Consensus 263 l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~ 342 (626)
+-......+.|.+.-||+.-++-+..+|.-....+. -+-+++.++.++.+.
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks----ND~iLshLiTfLNDk------------------------- 629 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS----NDVILSHLITFLNDK------------------------- 629 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc----ccchHHHHHHHhcCc-------------------------
Confidence 223344556777888888888888887764211110 122344444333211
Q ss_pred cccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcc-hHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHc
Q 006912 343 FHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE-ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (626)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~ 421 (626)
+|..|.+..+.+..++-..|.. +-+.++|.+.+.++++. ..+...|+.++..+++
T Consensus 630 ---------------------Dw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~E---E~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 630 ---------------------DWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGE---EAVIVSALGSLSILIK 685 (1431)
T ss_pred ---------------------cHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcc---hhhHHHHHHHHHHHHH
Confidence 3789999888888888888874 66788999999999998 8999999999999887
Q ss_pred cCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhh
Q 006912 422 GCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ 466 (626)
Q Consensus 422 ~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 466 (626)
... .-.+++.+++..+.+.+-++|-.||++++..|...+..+..
T Consensus 686 ~~l-l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 686 LGL-LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred hcc-cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 431 11477888999999999999999999999999888877654
No 64
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.1e-05 Score=82.35 Aligned_cols=396 Identities=11% Similarity=0.111 Sum_probs=245.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHH
Q 006912 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (626)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~ 92 (626)
.-.+|.++|+. +.|.. .+.+-...+..+.+..+...++..+...-.+++.++|+.--++|-+.-... ++..-
T Consensus 36 ~~~dL~~lLdS--nkd~~-KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeq-----pdLAL 107 (968)
T KOG1060|consen 36 RHDDLKQLLDS--NKDSL-KLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQ-----PDLAL 107 (968)
T ss_pred ChHHHHHHHhc--cccHH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcC-----CCcee
Confidence 33566666664 22333 444444444455655554333333332212778999998888886554322 11111
Q ss_pred HHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCC
Q 006912 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (626)
Q Consensus 93 ~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~ 172 (626)
-=.+.+-+.|.++++.+|-.|.+++..|- .+-.-|-++-.+.++..|..+.+|..|..++-++...-++.
T Consensus 108 LSIntfQk~L~DpN~LiRasALRvlSsIR---vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~------- 177 (968)
T KOG1060|consen 108 LSINTFQKALKDPNQLIRASALRVLSSIR---VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ------- 177 (968)
T ss_pred eeHHHHHhhhcCCcHHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh-------
Confidence 11245566889999999998877776654 23445677788888999999999999999998887655543
Q ss_pred CccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhC
Q 006912 173 LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (626)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 252 (626)
-.++...+-.+|.|.++.|--.|+-++..++.. .+ +.+-.-...+++++.|-++--+.-++..|...+...
T Consensus 178 -----k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe---rl-dLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~ 248 (968)
T KOG1060|consen 178 -----KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE---RL-DLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQ 248 (968)
T ss_pred -----HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh---HH-HHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhc
Confidence 246777788889999999999999888877632 22 112222445555555544444455556665554321
Q ss_pred ---c--------------------------cchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhh
Q 006912 253 ---P--------------------------SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL 303 (626)
Q Consensus 253 ---~--------------------------~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l 303 (626)
| -...+-+.-+++..-.++......|..++.+.+..++... ..
T Consensus 249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~~---- 320 (968)
T KOG1060|consen 249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----QV---- 320 (968)
T ss_pred CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----HH----
Confidence 1 0112223344444444566677778888888777776542 22
Q ss_pred hhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcC
Q 006912 304 PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG 383 (626)
Q Consensus 304 ~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~ 383 (626)
..++..++..|.... .++....+++..++..-+
T Consensus 321 ~~i~kaLvrLLrs~~-----------------------------------------------~vqyvvL~nIa~~s~~~~ 353 (968)
T KOG1060|consen 321 TKIAKALVRLLRSNR-----------------------------------------------EVQYVVLQNIATISIKRP 353 (968)
T ss_pred HHHHHHHHHHHhcCC-----------------------------------------------cchhhhHHHHHHHHhcch
Confidence 223333333332111 134446666666666555
Q ss_pred cchHHhHHHHHHHhhcC-CCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHH
Q 006912 384 DEILPTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (626)
Q Consensus 384 ~~~~~~l~~~l~~~l~~-~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (626)
. .+.|++..++-- .| ...++.--+..|..++.. ..+..|++.+.--+.+.+..+...|+.+||+.+.
T Consensus 354 ~----lF~P~lKsFfv~ssD--p~~vk~lKleiLs~La~e------sni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~ 421 (968)
T KOG1060|consen 354 T----LFEPHLKSFFVRSSD--PTQVKILKLEILSNLANE------SNISEILRELQTYIKSSDRSFAAAAVKAIGRCAS 421 (968)
T ss_pred h----hhhhhhhceEeecCC--HHHHHHHHHHHHHHHhhh------ccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 3 234566665533 33 144555556777777763 3455567766666777777889999999999988
Q ss_pred HHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc
Q 006912 463 FIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (626)
Q Consensus 463 ~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~ 511 (626)
... ..-..++.+|+..+.+.+..|...+...|..++..-+
T Consensus 422 ~~~---------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 422 RIG---------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred hhC---------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 654 3346788999999988888999999999999987654
No 65
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.00 E-value=2.7e-06 Score=83.46 Aligned_cols=287 Identities=14% Similarity=0.072 Sum_probs=150.0
Q ss_pred hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHh-ccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccch
Q 006912 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM-LMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (626)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 256 (626)
..++.|.+-.-+++.-..|...+.+++..+.. +..+.+. ...+..|-.++..+....|-.|++.|+.++..+|+.+
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~---~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFV---DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 34444555555666667788888888887763 3343333 3335566666777778889999999999999998765
Q ss_pred hhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCc-----hhhhhhhhhccCC
Q 006912 257 EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYAD-----DDESLVEAEEDES 331 (626)
Q Consensus 257 ~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~-----~d~~~~~~~~~e~ 331 (626)
...-.++- ....|.+..+...|+..|..-...+ --.-+-+.++..++-+++.- +-++.+.--.
T Consensus 339 ~vcN~evE----sLIsd~Nr~IstyAITtLLKTGt~e-----~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F--- 406 (898)
T COG5240 339 SVCNKEVE----SLISDENRTISTYAITTLLKTGTEE-----TIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF--- 406 (898)
T ss_pred eecChhHH----HHhhcccccchHHHHHHHHHcCchh-----hHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC---
Confidence 42111111 1223444444444443332221111 11112233333333222110 0000000000
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHH
Q 006912 332 LPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREA 411 (626)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~a 411 (626)
|.+. ..++.+.. +.. -..+.+...+++.+++..+....|+ .-...+..++.++.+.. -.+-
T Consensus 407 -p~k~---~s~l~FL~----~~L-----~~eGg~eFK~~~Vdaisd~~~~~p~-skEraLe~LC~fIEDce-----y~~I 467 (898)
T COG5240 407 -PSKK---LSYLDFLG----SSL-----LQEGGLEFKKYMVDAISDAMENDPD-SKERALEVLCTFIEDCE-----YHQI 467 (898)
T ss_pred -cHHH---HHHHHHHH----HHH-----HhcccchHHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHhhcc-----hhHH
Confidence 0000 00000000 000 0011234566777777776666653 22245555666666643 3345
Q ss_pred HHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccC
Q 006912 412 AVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT 491 (626)
Q Consensus 412 al~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~ 491 (626)
++..|+-++...+..-.|- ..+.++..++-=.+..||.+|+.+|+.++-...+ ...-+.+...+-.+++|.
T Consensus 468 ~vrIL~iLG~EgP~a~~P~--~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d-------~~~~~sv~~~lkRclnD~ 538 (898)
T COG5240 468 TVRILGILGREGPRAKTPG--KYVRHIYNRLILENNIVRSAAVQALSKFALNISD-------VVSPQSVENALKRCLNDQ 538 (898)
T ss_pred HHHHHHHhcccCCCCCCcc--hHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc-------cccHHHHHHHHHHHhhcc
Confidence 5666677766554332221 1233444444446788999999999999865532 222345566677788999
Q ss_pred CHHHHHHHHHHHHHHH
Q 006912 492 NKRVQEAACSAFATLE 507 (626)
Q Consensus 492 ~~~v~~~a~~al~~l~ 507 (626)
+..||.+|.-++..+=
T Consensus 539 DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 539 DDEVRDRASFLLRNMR 554 (898)
T ss_pred cHHHHHHHHHHHHhhh
Confidence 9999999999998875
No 66
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.97 E-value=2.1e-05 Score=86.01 Aligned_cols=406 Identities=13% Similarity=0.103 Sum_probs=228.5
Q ss_pred HhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc-CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCc
Q 006912 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (626)
Q Consensus 96 ~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~-~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~ 174 (626)
+.++-.++++...+|..|.+|+..|+..++. -.-+++-..+...+.|+...||++|+..+|..+-..++.
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~--------- 889 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL--------- 889 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH---------
Confidence 4555666788999999999999999998753 455888888888888989999999999999988777653
Q ss_pred cchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-Cc
Q 006912 175 ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV-RP 253 (626)
Q Consensus 175 ~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~ 253 (626)
..++...+.+.+.|+...||+.+++.+..++...|+. +.++.+.-.++...+|.+..+.+.+++++..+.-. .+
T Consensus 890 ---~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~ 964 (1692)
T KOG1020|consen 890 ---IFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVP 964 (1692)
T ss_pred ---HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCC
Confidence 4677778888999999999999999999999776643 23344566677777887777999999999887532 22
Q ss_pred cc-hhh-hHH------HHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhh
Q 006912 254 SF-LEP-HLR------NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVE 325 (626)
Q Consensus 254 ~~-~~~-~l~------~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~ 325 (626)
.. -.+ +.. +.+......+.+..+..-...+.+-...............-+...+..+..++....-+++..
T Consensus 965 ~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~- 1043 (1692)
T KOG1020|consen 965 EVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESD- 1043 (1692)
T ss_pred cccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhH-
Confidence 21 111 111 111111111222222222222222111111111112222223333333333333222111100
Q ss_pred hhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHH-HHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCC-
Q 006912 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLR-KCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGD- 403 (626)
Q Consensus 326 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~- 403 (626)
+ ..++++ ..| .+....|-.+++..|.-+.+.-+-.+..++++...
T Consensus 1044 -~-------------------------~~~~~~-------~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t 1090 (1692)
T KOG1020|consen 1044 -D-------------------------MNEEES-------EVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKAST 1090 (1692)
T ss_pred -h-------------------------hhcccc-------hhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccc
Confidence 0 000000 123 34456667777777764443444455566655410
Q ss_pred -CChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHH
Q 006912 404 -EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (626)
Q Consensus 404 -~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~ 482 (626)
+..+.-+..+..+.....-....-..++.++=..++..+--.+-.....|+-|+|.+...... .......++.
T Consensus 1091 ~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~------~~~~v~~cf~ 1164 (1692)
T KOG1020|consen 1091 IEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTD------GAKVVKACFS 1164 (1692)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhcc------chHHHHHHHH
Confidence 003334444444554444433333455666666666666545556666777888888875432 3444555555
Q ss_pred HHHHHhc-------cC----CHHHHHHHHHHHHHHHHHh--------cccccchHHHHHHHHHHHHhhh----hHHHHHH
Q 006912 483 GLLKRIL-------DT----NKRVQEAACSAFATLEEEA--------AEELAPRLEIILQHLMMAFGKY----QRRNLRI 539 (626)
Q Consensus 483 ~l~~~l~-------d~----~~~v~~~a~~al~~l~~~~--------~~~~~~~l~~i~~~l~~~l~~~----~~~~~~~ 539 (626)
.+++.+. ++ +...-.+...+++-+++.+ +.........+.+..+.++... +...++.
T Consensus 1165 ~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~ 1244 (1692)
T KOG1020|consen 1165 CYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRK 1244 (1692)
T ss_pred HHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHH
Confidence 5554432 22 2233455677788887743 2222223334555544444332 2344568
Q ss_pred HHHHHHHHHHHhcccc
Q 006912 540 VYDAIGTLADAVGFEL 555 (626)
Q Consensus 540 ~~~~l~~i~~~~~~~~ 555 (626)
++.++|.++-.-+.-+
T Consensus 1245 al~~Lg~~ci~hp~l~ 1260 (1692)
T KOG1020|consen 1245 ALINLGFICIQHPSLF 1260 (1692)
T ss_pred HHHHHHHHHhhCchhh
Confidence 9999998876655444
No 67
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3e-05 Score=82.16 Aligned_cols=444 Identities=13% Similarity=0.096 Sum_probs=249.7
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhC-CcHHHHHHHHHHHHHHHhhc--CcCchHH
Q 006912 55 FILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLG--GIAGWLE 131 (626)
Q Consensus 55 ~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~-~~~~vr~~~~~~l~~i~~~~--~~~~~~~ 131 (626)
+++....+.+-.+|..||.-+++.... ++.+-..++....+..++- +++..-..++.+++.++... .+...++
T Consensus 345 ~Lls~l~d~dt~VrWSaAKg~grvt~r----lp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~d 420 (1133)
T KOG1943|consen 345 HLLSALSDTDTVVRWSAAKGLGRVTSR----LPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLED 420 (1133)
T ss_pred HHHHhccCCcchhhHHHHHHHHHHHcc----CcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 344444477889999999999876543 6677777888888887653 34666779999999999774 5677789
Q ss_pred HHHHHHHHhc--------cCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHH-HhcCCCChHHHHHHHH
Q 006912 132 LLQALVTCLD--------SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL-QFFQSPHTSLRKLSLG 202 (626)
Q Consensus 132 ll~~l~~~l~--------~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~-~~l~~~~~~vr~~al~ 202 (626)
++|.+.+.+. +....+|.+|+.+.-.+......... ++.+..+.+.++ .++=|+...+|.+|.-
T Consensus 421 VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l-------~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 421 VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL-------KPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh-------hHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 9999998874 22346899999888888877654311 122343444433 3455778889999998
Q ss_pred HHHHHHhccch-----HHH----------------------HhHHHHHHHHHH----h-cCCCCHHHHHHHHHHHHHHHh
Q 006912 203 SVNQFIMLMPS-----ALF----------------------VSMDQYLQGLFL----L-SNDPSAEVRKLVCAAFNLLIE 250 (626)
Q Consensus 203 ~l~~~~~~~~~-----~~~----------------------~~~~~~l~~l~~----~-~~~~~~~~~~~~~~~l~~l~~ 250 (626)
+|-..+...+. ++. ..++.+...+++ . +.+=+..+|..+..+|..+..
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 88877644221 000 112222333333 2 344567899999999999999
Q ss_pred hCccchh-hhHHHHHHHHHhhccCCChHHHHHH----HhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhh
Q 006912 251 VRPSFLE-PHLRNLFEYMLQVNKDTDDDVALEA----CEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVE 325 (626)
Q Consensus 251 ~~~~~~~-~~l~~l~~~~~~~~~~~~~~v~~~a----~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~ 325 (626)
..|+.+. .+++++++.... .+...|..+ -++++++-..+ |.+..+...-+..+...
T Consensus 574 ~~pk~~a~~~L~~lld~~ls----~~~~~r~g~~la~~ev~~~~~~l~-------~~~~~l~e~~i~~l~~i-------- 634 (1133)
T KOG1943|consen 574 TEPKYLADYVLPPLLDSTLS----KDASMRHGVFLAAGEVIGALRKLE-------PVIKGLDENRIAGLLSI-------- 634 (1133)
T ss_pred hhHHhhcccchhhhhhhhcC----CChHHhhhhHHHHHHHHHHhhhhh-------hhhhhhHHHHhhhhhhh--------
Confidence 9888776 455666654433 333333333 33333332221 11111111111100000
Q ss_pred hhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCC-CC
Q 006912 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASG-DE 404 (626)
Q Consensus 326 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~-~~ 404 (626)
+.|....... ....--.|.+....+..++-.-..-....+.......+.+.. ..
T Consensus 635 -------------i~~~~~~~~~------------rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~ 689 (1133)
T KOG1943|consen 635 -------------IPPICDRYFY------------RGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP 689 (1133)
T ss_pred -------------ccHHHHHHhc------------cchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch
Confidence 0000000000 000001233333333333222221111122222222332221 11
Q ss_pred ChhHHHHHHHHHHHHHccCccchhhhHH-HHHHHHhhhcCCC-chHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHH
Q 006912 405 AWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (626)
Q Consensus 405 ~~~~r~aal~~l~~l~~~~~~~~~~~l~-~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~ 482 (626)
-..|.++..+++.+....-.. .+... .++...+..+.++ +..+|.....++|.+...... ..+.+.+..
T Consensus 690 -n~i~~~av~av~~l~s~y~~~-d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~-------~~~q~~lc~ 760 (1133)
T KOG1943|consen 690 -NQIRDAAVSAVSDLVSTYVKA-DEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIH-------RHLQEKLCK 760 (1133)
T ss_pred -HHHHHHHHHHHHHHHHHHHhc-CchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhc-------hHHHHHHHH
Confidence 278999999999887643110 11111 3555556666554 788999888888888755432 222333344
Q ss_pred HHHHHhc-cCCHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHHHHHHhc
Q 006912 483 GLLKRIL-DTNKRVQEAACSAFATLEEEAA-EELAPRLEIILQHLMMAFGKYQ--------RRNLRIVYDAIGTLADAVG 552 (626)
Q Consensus 483 ~l~~~l~-d~~~~v~~~a~~al~~l~~~~~-~~~~~~l~~i~~~l~~~l~~~~--------~~~~~~~~~~l~~i~~~~~ 552 (626)
.++.... |..+.-|.....++..+++..+ ..+..-...+++.|+++++++. .-+++.++.++..+.-.+.
T Consensus 761 ~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 761 LVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred HHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 4444333 2267778999999999998876 3344556666667777776652 3457789999988877665
Q ss_pred -cccCChhhhh
Q 006912 553 -FELNQPVYLD 562 (626)
Q Consensus 553 -~~~~~~~~~~ 562 (626)
+++..++.+.
T Consensus 841 ~p~~ld~~~i~ 851 (1133)
T KOG1943|consen 841 SPKLLDEDSIN 851 (1133)
T ss_pred CcccccHHHHH
Confidence 4444333333
No 68
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.97 E-value=3.8e-09 Score=79.05 Aligned_cols=67 Identities=36% Similarity=0.526 Sum_probs=61.8
Q ss_pred HHHHHHHHhcC-CChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhc--------cCChhHHHHHHHhHhhhhh
Q 006912 36 IWQQLQQYSQF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK--------SMSPSNQQYIKSELLPCLG 103 (626)
Q Consensus 36 a~~~L~~~~~~-p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~--------~l~~~~~~~i~~~L~~~l~ 103 (626)
|+++|.+++++ |+|+..|++++.+ .+.++.+|++|+++|||.|.++|. .++++.+..||+.+++.|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~-~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSS-NSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999988 9999999999964 367999999999999999999999 8999999999999998874
No 69
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=8.8e-06 Score=82.13 Aligned_cols=252 Identities=13% Similarity=0.137 Sum_probs=165.1
Q ss_pred hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchh
Q 006912 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (626)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (626)
..++.+.++..++++.+.+|+.|+..++.++..-|+.+.+. ++.|..-+.|+++.|...|..+++.++.+.|...-
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~----FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPC----FPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhh----HHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 46777889999999999999999999998887667776655 45677777999999999999999999999998654
Q ss_pred hhHHHHHHHHHhhccC--CChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCC
Q 006912 258 PHLRNLFEYMLQVNKD--TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDR 335 (626)
Q Consensus 258 ~~l~~l~~~~~~~~~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~ 335 (626)
+ +-|.+++.+.+ .++ +-...+..++.+.-. .+...+ ++++.+...|..+.
T Consensus 218 ~----LAP~ffkllttSsNNW-mLIKiiKLF~aLtpl--EPRLgK----KLieplt~li~sT~----------------- 269 (877)
T KOG1059|consen 218 Q----LAPLFYKLLVTSSNNW-VLIKLLKLFAALTPL--EPRLGK----KLIEPITELMESTV----------------- 269 (877)
T ss_pred c----ccHHHHHHHhccCCCe-ehHHHHHHHhhcccc--Cchhhh----hhhhHHHHHHHhhH-----------------
Confidence 4 33444444433 234 455566666766544 222222 23333322221110
Q ss_pred CCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhh-----cCc--chHHhHHHHHHHhhcCCCCCChhH
Q 006912 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV-----FGD--EILPTLMPVIQAKLSASGDEAWKD 408 (626)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~-----~~~--~~~~~l~~~l~~~l~~~~~~~~~~ 408 (626)
--.....|+..+... .++ ..+...+.-+..++.+.| ...
T Consensus 270 -------------------------------AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsD---qNL 315 (877)
T KOG1059|consen 270 -------------------------------AMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSD---QNL 315 (877)
T ss_pred -------------------------------HHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCC---ccH
Confidence 001122333333222 112 234556677888888998 999
Q ss_pred HHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHh
Q 006912 409 REAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI 488 (626)
Q Consensus 409 r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l 488 (626)
|+-++.|++.++..-+.....+ -..++.++.|.++.+|..|+..+-.+.. ++.+..++..|+..+
T Consensus 316 KYlgLlam~KI~ktHp~~Vqa~----kdlIlrcL~DkD~SIRlrALdLl~gmVs-----------kkNl~eIVk~LM~~~ 380 (877)
T KOG1059|consen 316 KYLGLLAMSKILKTHPKAVQAH----KDLILRCLDDKDESIRLRALDLLYGMVS-----------KKNLMEIVKTLMKHV 380 (877)
T ss_pred HHHHHHHHHHHhhhCHHHHHHh----HHHHHHHhccCCchhHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHH
Confidence 9999999999998765544444 3567889999999999999988765543 455666666676666
Q ss_pred ccCCH-HHHHHHHHHHHHHHHHh
Q 006912 489 LDTNK-RVQEAACSAFATLEEEA 510 (626)
Q Consensus 489 ~d~~~-~v~~~a~~al~~l~~~~ 510 (626)
...+. ..|...+.-+..+|...
T Consensus 381 ~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 381 EKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred HhccchhHHHHHHHHHHHHhhhh
Confidence 54443 55665555555555443
No 70
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.94 E-value=4.5e-08 Score=91.08 Aligned_cols=181 Identities=17% Similarity=0.120 Sum_probs=131.3
Q ss_pred cccccHHHHHHHHHHHHHhhc-CcchHHhHH-------HHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHH
Q 006912 362 VNVWNLRKCSAAALDVLSNVF-GDEILPTLM-------PVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE 433 (626)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~-------~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~ 433 (626)
+.+|..|..|..-+..+...- +....+.++ ..+...+.+.. ..+...|+.+++.++..++..+.++++.
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R---s~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR---SKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH------HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 345999999999999887766 222223333 34445555555 6788889999999999998889999999
Q ss_pred HHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHH-HHHHHHHhccCCHHHHHHHHHHHHHHHHHhc-
Q 006912 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKV-LMGLLKRILDTNKRVQEAACSAFATLEEEAA- 511 (626)
Q Consensus 434 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l-l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~- 511 (626)
++|.++..+.|++..+|.+|..++..+++.++ +...+ ++.+...+.+.++.+|..++..+..++...+
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS----------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999998653 22344 6667777889999999999999999998887
Q ss_pred --ccccc--hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc
Q 006912 512 --EELAP--RLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (626)
Q Consensus 512 --~~~~~--~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~ 555 (626)
..+.. .++.+.+.+...+.+.+.+++..+-.++..+.+..|...
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 44544 358899999999999999999999999999988887654
No 71
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=8e-06 Score=83.59 Aligned_cols=313 Identities=12% Similarity=0.105 Sum_probs=188.3
Q ss_pred HHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCC
Q 006912 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (626)
Q Consensus 93 ~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~ 172 (626)
-+-+.+-+-|++++..+.-.|..+++.|+ +++..+++.|.+.+.++..++.+|+.|+.|...+....|+.
T Consensus 107 LltNslknDL~s~nq~vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l------- 176 (866)
T KOG1062|consen 107 LLTNSLKNDLNSSNQYVVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL------- 176 (866)
T ss_pred HHHHHHHhhccCCCeeehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH-------
Confidence 34444444555666666655555666655 56778999999999999999999999999999999988854
Q ss_pred CccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchH---HHHhHHHHHHHHHHhcCC---CCHHHHHHHHHHHH
Q 006912 173 LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA---LFVSMDQYLQGLFLLSND---PSAEVRKLVCAAFN 246 (626)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~---~~~~~~~~l~~l~~~~~~---~~~~~~~~~~~~l~ 246 (626)
...+++...+.|.+.+..|-.+++..+..++...|+. +.+..++++..|-++... ++.++
T Consensus 177 -----~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv--------- 242 (866)
T KOG1062|consen 177 -----VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDV--------- 242 (866)
T ss_pred -----HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCc---------
Confidence 4778888999999999999999999998988775533 222233333333333221 11110
Q ss_pred HHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc-CCcchhHHhhhhhhHHHHhhhcccCchhhhhhh
Q 006912 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA-QLPHENLKEFLPRLVPVLLSNMIYADDDESLVE 325 (626)
Q Consensus 247 ~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~ 325 (626)
...-.|+++--+-.++..+...+.+....-.+.|..+++. ...++.. ..++..+
T Consensus 243 ------~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~G----nAILYE~--------------- 297 (866)
T KOG1062|consen 243 ------HGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAG----NAILYEC--------------- 297 (866)
T ss_pred ------cCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccch----hHHHHHH---------------
Confidence 1122244432222233334334444444445556666554 1111111 1111211
Q ss_pred hhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-chHHhHHHHHHHhhcCCCCC
Q 006912 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDE 404 (626)
Q Consensus 326 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~ 404 (626)
+..+....+. ......+..+-+++.+++
T Consensus 298 -------------------------------------------------V~TI~~I~~~~~LrvlainiLgkFL~n~d-- 326 (866)
T KOG1062|consen 298 -------------------------------------------------VRTIMDIRSNSGLRVLAINILGKFLLNRD-- 326 (866)
T ss_pred -------------------------------------------------HHHHHhccCCchHHHHHHHHHHHHhcCCc--
Confidence 1111111111 111222334445566776
Q ss_pred ChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHH
Q 006912 405 AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (626)
Q Consensus 405 ~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l 484 (626)
-..|+.|+..|......-+.....| -..++.+++|+++.+|+.|+..+-.+.. ...+..++..+
T Consensus 327 -~NirYvaLn~L~r~V~~d~~avqrH----r~tIleCL~DpD~SIkrralELs~~lvn-----------~~Nv~~mv~eL 390 (866)
T KOG1062|consen 327 -NNIRYVALNMLLRVVQQDPTAVQRH----RSTILECLKDPDVSIKRRALELSYALVN-----------ESNVRVMVKEL 390 (866)
T ss_pred -cceeeeehhhHHhhhcCCcHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHHHHhc-----------cccHHHHHHHH
Confidence 7788888888888877655433333 3567889999999999999876655542 34456666777
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHH
Q 006912 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEII 521 (626)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i 521 (626)
+..|...++..+...+.-+..+++.+.+.=.=|++.+
T Consensus 391 l~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtm 427 (866)
T KOG1062|consen 391 LEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTM 427 (866)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 7777666777888888888877777654333333333
No 72
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=3.2e-06 Score=86.44 Aligned_cols=466 Identities=13% Similarity=0.125 Sum_probs=264.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHh-cCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHH
Q 006912 18 CRLLEQQISPSSTADKSQIWQQLQQYS-QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS 96 (626)
Q Consensus 18 ~~~l~~~~s~d~~~~r~~a~~~L~~~~-~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~ 96 (626)
..+-+++.|.-++ .|+.|.+.....- --++....+-.++.+-.+.+-+.+.+.-.++.+.- ...|+......+
T Consensus 16 ~elks~l~s~~~~-kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa-----~~~P~~a~~avn 89 (734)
T KOG1061|consen 16 PELKSQLNSQSKE-KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYA-----KGKPDLAILAVN 89 (734)
T ss_pred hHHHHHhhhhhhh-hHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhh-----ccCchHHHhhhh
Confidence 3333333333335 7888877776643 34555454555665444667888888888886543 344555556666
Q ss_pred hHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccc
Q 006912 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (626)
Q Consensus 97 ~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~ 176 (626)
.++.-..++++.+|..|.+..+.+- .+..|..+...+.+++.+.++-+|..+..+...+...-++...
T Consensus 90 t~~kD~~d~np~iR~lAlrtm~~l~---v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~--------- 157 (734)
T KOG1061|consen 90 TFLKDCEDPNPLIRALALRTMGCLR---VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE--------- 157 (734)
T ss_pred hhhccCCCCCHHHHHHHhhceeeEe---ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc---------
Confidence 7777778899999988665544332 3567788899999999999999999999999888776665433
Q ss_pred hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccch-HHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccc
Q 006912 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (626)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 255 (626)
-..+++.+...+.|.++.|...|+.++..+.+..+. ........++..++..++.-++--+...+.++........
T Consensus 158 -~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-- 234 (734)
T KOG1061|consen 158 -DSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-- 234 (734)
T ss_pred -ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--
Confidence 256778888888899999999999999999876653 2222233445555555554344334444444433332222
Q ss_pred hhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhh-ccCCCCC
Q 006912 256 LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAE-EDESLPD 334 (626)
Q Consensus 256 ~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~-~~e~~~~ 334 (626)
.-...+++-+...+++....+...+..++..+... ........+.++.+.++..+...+ +.+...-+ -..-...
T Consensus 235 --~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~--~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~ 309 (734)
T KOG1061|consen 235 --REAEDICERLTPRLQHANSAVVLSAVKVILQLVKY--LKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQK 309 (734)
T ss_pred --hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHH--HHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHh
Confidence 12234555555555665555656666655554443 111122233333333332222111 11000000 0000000
Q ss_pred CC----CCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHH
Q 006912 335 RD----QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDRE 410 (626)
Q Consensus 335 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~ 410 (626)
.. .+++-++-+.+ |. ..+...-.+++..+ ..+..++.++.-+.++-..-| ..--.
T Consensus 310 ~p~~~~~~~~~Ff~kyn----DP-----------iYvK~eKleil~~l---a~~~nl~qvl~El~eYatevD---~~fvr 368 (734)
T KOG1061|consen 310 RPEILKVEIKVFFCKYN----DP-----------IYVKLEKLEILIEL---ANDANLAQVLAELKEYATEVD---VDFVR 368 (734)
T ss_pred ChHHHHhHhHeeeeecC----Cc-----------hhhHHHHHHHHHHH---hhHhHHHHHHHHHHHhhhhhC---HHHHH
Confidence 00 00111111100 00 01222233333333 233445567777777777777 78888
Q ss_pred HHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhcc
Q 006912 411 AAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD 490 (626)
Q Consensus 411 aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d 490 (626)
.+++++|.++....+. ...++.++..++-....|...++..+..+...+++ ..+.+++.+...+.+
T Consensus 369 kaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~---------~~~~vv~~l~~~~~s 434 (734)
T KOG1061|consen 369 KAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN---------KYESVVAILCENLDS 434 (734)
T ss_pred HHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC---------chhhhhhhhcccccc
Confidence 8899999998866432 56788888888866555666666666666655542 125555555555443
Q ss_pred -CCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Q 006912 491 -TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (626)
Q Consensus 491 -~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~ 552 (626)
.+|..|.+-.|-++...+.+.+. +.++..++.-+. ++.....++.+.+.++-+.
T Consensus 435 l~epeak~amiWilg~y~~~i~~a-----~elL~~f~en~~---dE~~~Vql~LLta~ik~Fl 489 (734)
T KOG1061|consen 435 LQEPEAKAALIWILGEYAERIENA-----LELLESFLENFK---DETAEVQLELLTAAIKLFL 489 (734)
T ss_pred cCChHHHHHHHHHHhhhhhccCcH-----HHHHHHHHhhcc---cchHHHHHHHHHHHHHHHh
Confidence 35888888888998887765432 334444333333 3444444555555555443
No 73
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.89 E-value=1e-05 Score=82.18 Aligned_cols=352 Identities=17% Similarity=0.174 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHhhcCcCchHHHHHHHHHHhcc-----CChhHHhHHHHHHHHHhhhchhcc-ccCCCCCccchhh-hhH
Q 006912 110 RSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-----NDINHMEGAMDALSKICEDIPQVL-DSDVPGLAECPIN-IFL 182 (626)
Q Consensus 110 r~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~-----~~~~~r~~~l~~l~~l~~~~~~~~-~~~~~~~~~~~~~-~il 182 (626)
....-.+++.++.. +..|..+.+.+.+.+.. .+.......+.++..+.+...... ..+. ..+.. .++
T Consensus 19 ~~~~L~~l~~ls~~--~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~----~~y~~~~lv 92 (415)
T PF12460_consen 19 YERILEALAALSTS--PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDN----SWYFHRILV 92 (415)
T ss_pred HHHHHHHHHHHHCC--hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchH----HHHHHhHHH
Confidence 34445566666543 35566666666665542 245667778888888877665433 1110 01122 266
Q ss_pred HHHHHhcCC-----C--ChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcC----------CCC--HHHHHHHHH
Q 006912 183 PRLLQFFQS-----P--HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN----------DPS--AEVRKLVCA 243 (626)
Q Consensus 183 ~~l~~~l~~-----~--~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~----------~~~--~~~~~~~~~ 243 (626)
|.+++.... . +..+-..+...+..++..++..-...+ +..++.++. +.. ........-
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~---~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (415)
T PF12460_consen 93 PRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI---LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVI 169 (415)
T ss_pred HHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH---HHHHHHHHccccccCCCCccccccccccccHHH
Confidence 666655422 1 245556666777777777765443332 333333221 111 112223333
Q ss_pred HHHHHHh-hCccchhhhHHHHHHHHHhhc-cCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhh
Q 006912 244 AFNLLIE-VRPSFLEPHLRNLFEYMLQVN-KDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDE 321 (626)
Q Consensus 244 ~l~~l~~-~~~~~~~~~l~~l~~~~~~~~-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~ 321 (626)
.+..++. ..++.--+...+++..++... ...++..|..+++++..++..-...+.+.+++..+.... ...
T Consensus 170 l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~----~~~---- 241 (415)
T PF12460_consen 170 LFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSI----SSS---- 241 (415)
T ss_pred HHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhh----ccc----
Confidence 3333333 233322234455665555543 334477899999998888776222233333333332222 000
Q ss_pred hhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc---CcchHHhHHHHHHHhh
Q 006912 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF---GDEILPTLMPVIQAKL 398 (626)
Q Consensus 322 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~---~~~~~~~l~~~l~~~l 398 (626)
+ . -..|..+...+..+++.+ +......++..+.+.+
T Consensus 242 ------------------------------~-~----------~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL 280 (415)
T PF12460_consen 242 ------------------------------E-D----------SELRPQALEILIWITKALVMRGHPLATELLDKLLELL 280 (415)
T ss_pred ------------------------------C-C----------cchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh
Confidence 0 0 013455666666666655 3344445666666677
Q ss_pred cCCCCCChhHHHHHHHHHHHHHccCccc-------------hhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHh
Q 006912 399 SASGDEAWKDREAAVLALGAIAEGCIKG-------------LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (626)
Q Consensus 399 ~~~~~~~~~~r~aal~~l~~l~~~~~~~-------------~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (626)
.+ +.....+..+++.+.....+. ...++..++|.+++.+++.+...|.....+++.+.++.+
T Consensus 281 ~~-----~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 281 SS-----PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred CC-----hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 66 446777777887776652111 135677789999999988777799999999999999988
Q ss_pred hhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Q 006912 466 QDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMA 528 (626)
Q Consensus 466 ~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~ 528 (626)
.. ....+++.++|.+++++.-+++.++..+..++..+++...+.+.+|+..+++.|+++
T Consensus 356 ~~----vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 356 KS----VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HH----HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 65 578889999999999999888999999999999999988888899999999998753
No 74
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.83 E-value=1.6e-05 Score=80.67 Aligned_cols=198 Identities=17% Similarity=0.191 Sum_probs=146.9
Q ss_pred cHHHHHHHHHHHHHhhcCc-chHHhHHHHHHHhh-cCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcC
Q 006912 366 NLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKL-SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD 443 (626)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l-~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~ 443 (626)
..|..+.+++..++..++. +.+..++..+...+ .... ...|..++..+..++.+..-.-.+....++..++..+.
T Consensus 205 ~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~---~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~ 281 (415)
T PF12460_consen 205 FSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSED---SELRPQALEILIWITKALVMRGHPLATELLDKLLELLS 281 (415)
T ss_pred HHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCC---cchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhC
Confidence 3688899999999988754 44555555555545 2333 56677777777777666532223556667778888887
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhcCC--------CchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcc-cc
Q 006912 444 DKFPLIRSISCWTLSRFSKFIVQDIGH--------QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-EL 514 (626)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~~~~~--------~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~-~~ 514 (626)
| +.+...++.+++.+.......... -..+.++..++|.+++...+.+...+.....||..+++..+. .+
T Consensus 282 ~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl 359 (415)
T PF12460_consen 282 S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVL 359 (415)
T ss_pred C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHH
Confidence 7 777888888888887653332111 124677888999999998877777899999999999999974 55
Q ss_pred cchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHH
Q 006912 515 APRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIA 570 (626)
Q Consensus 515 ~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~ 570 (626)
.++++.++|.+++.+...+...+..+++++..++...+.-+. ++++.++|.+++
T Consensus 360 ~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~--~hl~sLI~~LL~ 413 (415)
T PF12460_consen 360 LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS--EHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHh
Confidence 899999999999999888888888999999999988754443 588888887764
No 75
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.82 E-value=1.6e-07 Score=87.45 Aligned_cols=194 Identities=19% Similarity=0.270 Sum_probs=126.7
Q ss_pred HHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccC-c----cchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHH
Q 006912 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-I----KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (626)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~-~----~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (626)
+...+.+.-.+.+ |..|..++..+..+..+. . +.+.+.+..++..+...+.|....|...|+.+++.++..+
T Consensus 8 ~~~~l~~~~~~~~---W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 8 ILAALEKKESESD---WEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp S-TTHHHHHT-SS---HHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccC---HHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444345566 999999999999988766 1 2223445556678888889999999999999999999998
Q ss_pred hhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHH-HHHHHHHHhhhhHHHHHHHHHH
Q 006912 465 VQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEII-LQHLMMAFGKYQRRNLRIVYDA 543 (626)
Q Consensus 465 ~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i-~~~l~~~l~~~~~~~~~~~~~~ 543 (626)
+.. ..++...++|.+++.+.+++..++..|..+|..+++.++ +.+.+ ...+.....+.+..++..++.+
T Consensus 85 ~~~-----~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~ 154 (228)
T PF12348_consen 85 GSH-----FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEW 154 (228)
T ss_dssp GGG-----GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred hHh-----HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 764 788899999999999999999999999999999998765 22344 5555666666677788899999
Q ss_pred HHHHHHHhc---cccCChhhhhhhhHHHHHHHhcCCCCCCcc-chHHHHHHHHHHHhccc
Q 006912 544 IGTLADAVG---FELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAG 599 (626)
Q Consensus 544 l~~i~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~l~~~~~l~~~~g~~ 599 (626)
+..++...+ ..+....+++.+.+.+...+.. .+++. ..+-+|+..+.+.+|..
T Consensus 155 l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D---~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 155 LAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSD---ADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHTT-----GGG--HHHHHHHHHHHHHHHTS---S-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHccchHhhhcccchHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHCCHh
Confidence 999998888 3332222356677666655542 23333 47777888887777764
No 76
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.81 E-value=5.6e-08 Score=74.68 Aligned_cols=94 Identities=16% Similarity=0.304 Sum_probs=82.7
Q ss_pred HHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHH
Q 006912 147 HMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGL 226 (626)
Q Consensus 147 ~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l 226 (626)
.|.+|+.+|..++...+.... .+++.++|.++.++.|++++||..|+++|+.++......+.+++.+++..+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~--------~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L 73 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDIS--------KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDAL 73 (97)
T ss_pred chhHHHHHHHHHHHHchHhHH--------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999998887643 568999999999999999999999999999999988888888999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHH
Q 006912 227 FLLSNDPSAEVRKLVCAAFNLLI 249 (626)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~l~ 249 (626)
+++..|++++||..+ +.|..+.
T Consensus 74 ~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 74 CKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHcCCchhHHHHH-HHHHHHh
Confidence 999999999998766 5555443
No 77
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.2e-07 Score=87.41 Aligned_cols=374 Identities=17% Similarity=0.102 Sum_probs=226.3
Q ss_pred HHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcC
Q 006912 111 STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (626)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 190 (626)
..++-+.+.+...+-...-.+....+...+++.++.++.++...++.+.-....-. +. -.+..+=+.+.+...
T Consensus 65 rsaalafAeitek~vr~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~------li-v~l~Gl~~Li~qmmt 137 (550)
T KOG4224|consen 65 RSAALAFAEITEKGVRRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKG------LI-VSLLGLDLLILQMMT 137 (550)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCce------EE-EeccChHHHHHHhcC
Confidence 34444556665543333334556667778889999998899999988776554321 00 012333334444444
Q ss_pred CCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhh
Q 006912 191 SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV 270 (626)
Q Consensus 191 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~ 270 (626)
+ ...+|..+++|+.+++.+......-.-..-+..+..+.+..+..++..+..+|..+.......-.-.-..-+++++..
T Consensus 138 d-~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsl 216 (550)
T KOG4224|consen 138 D-GVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSL 216 (550)
T ss_pred C-CcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhh
Confidence 4 557899999999999876332221111123555666666667778888888887765433221100001345677788
Q ss_pred ccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCC
Q 006912 271 NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHG 350 (626)
Q Consensus 271 ~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 350 (626)
++..+.+++..+...++.++-.....+.+...-++++|.++..|-...+
T Consensus 217 l~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~------------------------------- 265 (550)
T KOG4224|consen 217 LKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSD------------------------------- 265 (550)
T ss_pred hccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCCh-------------------------------
Confidence 8889999999999998888655334444555556778877766543221
Q ss_pred CCCCCCCCccccccccHHHHHHHHHHHHHhhcCc--chH-HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccc-
Q 006912 351 SENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG- 426 (626)
Q Consensus 351 ~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~- 426 (626)
.++-.|..+|..++..-.- +++ .--+|.+.++++++. -....+.+.|+..++-+-...
T Consensus 266 ---------------kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~---~plilasVaCIrnisihplNe~ 327 (550)
T KOG4224|consen 266 ---------------KVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPM---GPLILASVACIRNISIHPLNEV 327 (550)
T ss_pred ---------------HHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcc---hhHHHHHHHHHhhcccccCccc
Confidence 2333455666655543221 222 235677888888887 778888899998776543211
Q ss_pred h---hhhHHHHHHHHhhhcC-CCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHH
Q 006912 427 L---YPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSA 502 (626)
Q Consensus 427 ~---~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~a 502 (626)
. ..|+. -++..+. .++..++-.|..++..++...... ...-.-...+|.+...+.|....||.....|
T Consensus 328 lI~dagfl~----pLVrlL~~~dnEeiqchAvstLrnLAasse~n----~~~i~esgAi~kl~eL~lD~pvsvqseisac 399 (550)
T KOG4224|consen 328 LIADAGFLR----PLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN----VSVIRESGAIPKLIELLLDGPVSVQSEISAC 399 (550)
T ss_pred ceecccchh----HHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh----hHHHhhcCchHHHHHHHhcCChhHHHHHHHH
Confidence 1 12332 2333443 356778888988888887532211 0111224457788888888888888887777
Q ss_pred HHHHHH--HhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 006912 503 FATLEE--EAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (626)
Q Consensus 503 l~~l~~--~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~ 551 (626)
++.+.- ..++.+.. ..+++.|+....+.+.+++-.+..+++++.+.+
T Consensus 400 ~a~Lal~d~~k~~lld--~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 400 IAQLALNDNDKEALLD--SGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred HHHHHhccccHHHHhh--cCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 777653 23333221 245566666666666777778888888887655
No 78
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=1.9e-06 Score=79.80 Aligned_cols=387 Identities=14% Similarity=0.087 Sum_probs=236.0
Q ss_pred hHhhhhhCCcHHHHHHHHHHHHHHHhhcCc----CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCC
Q 006912 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGI----AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (626)
Q Consensus 97 ~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~----~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~ 172 (626)
.++-++++.++.+...++..+++++-.... ....++-+.+.+.+.+. ..++..++.|+..++..-.... .
T Consensus 89 pvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~--k--- 162 (550)
T KOG4224|consen 89 PVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKV--K--- 162 (550)
T ss_pred HHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchh--h---
Confidence 344567788999999999999988855322 12344445666666554 4577778888888877632211 1
Q ss_pred CccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 006912 173 LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (626)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (626)
-....-+..+...-+..+..+|..+..+|..+...-.. -...+ ..-+|.+..++...+.+++..++.++..+.-.
T Consensus 163 ---iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~En-Rr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 163 ---IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSREN-RRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD 238 (550)
T ss_pred ---hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhh-hhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh
Confidence 11233455667767778889999999999877643111 00000 12368889999999999999999999877633
Q ss_pred --CccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhh-hhHHHHhhhcccCchhhhhhhhhc
Q 006912 252 --RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDDESLVEAEE 328 (626)
Q Consensus 252 --~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~-~li~~l~~~l~~~~~d~~~~~~~~ 328 (626)
....+...-+.+++.++..+.+.++.++..|--.+..++... +...+.++ .-+|.++..++...-
T Consensus 239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt---~Yq~eiv~ag~lP~lv~Llqs~~~--------- 306 (550)
T KOG4224|consen 239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT---EYQREIVEAGSLPLLVELLQSPMG--------- 306 (550)
T ss_pred HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc---hhhhHHHhcCCchHHHHHHhCcch---------
Confidence 223333333568888899999999999999988889887752 22333332 335555554432110
Q ss_pred cCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcch--H-HhHHHHHHHhhcCCCCCC
Q 006912 329 DESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI--L-PTLMPVIQAKLSASGDEA 405 (626)
Q Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~--~-~~l~~~l~~~l~~~~~~~ 405 (626)
..--+..-|+..++..-+.+. . .-++..+...+.-.+.
T Consensus 307 -------------------------------------plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dn-- 347 (550)
T KOG4224|consen 307 -------------------------------------PLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDN-- 347 (550)
T ss_pred -------------------------------------hHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCc--
Confidence 011122335555544443321 1 1233445556655441
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHH-HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhH-HHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMG 483 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~ll~~ 483 (626)
-..+-.|...+..++....+....+.+ ..+|.+...+.|....||...-.|+++++-.-. +...++ ..++|.
T Consensus 348 EeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~------~k~~lld~gi~~i 421 (550)
T KOG4224|consen 348 EEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN------DKEALLDSGIIPI 421 (550)
T ss_pred hhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc------cHHHHhhcCCcce
Confidence 457778888888887755433333332 267888888899998898887777777764221 111111 346777
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHhc------ccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006912 484 LLKRILDTNKRVQEAACSAFATLEEEAA------EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (626)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~~~------~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~ 550 (626)
++....+.+..||..|+.||.++.+... +.+....+.+-..|.+++..........+.-++.-+.+.
T Consensus 422 LIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 422 LIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLED 494 (550)
T ss_pred eecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 8888888899999999999999987642 223222255555555555543333333444444444444
No 79
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=2.5e-05 Score=78.24 Aligned_cols=296 Identities=17% Similarity=0.168 Sum_probs=173.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc---C--Cc
Q 006912 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA---Q--LP 295 (626)
Q Consensus 221 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~---~--~~ 295 (626)
.....+....++.+..||..|++.|..+-+. -.+. ..+.....+.+.|.+++||.+|++.+.-.... + ..
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL~---~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEG--FKLS---KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhccc--cccc---HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 3456688888899999999999999988872 2221 23455566778999999999998764433322 1 11
Q ss_pred chhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHH
Q 006912 296 HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (626)
Q Consensus 296 ~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l 375 (626)
.+. .......+..+...+ .+.+|.+|..|+.++
T Consensus 273 ~~e-~kl~D~aF~~vC~~v----------------------------------------------~D~sl~VRV~AaK~l 305 (823)
T KOG2259|consen 273 SEE-EKLKDAAFSSVCRAV----------------------------------------------RDRSLSVRVEAAKAL 305 (823)
T ss_pred hhh-hhhHHHHHHHHHHHH----------------------------------------------hcCceeeeehHHHHh
Confidence 110 011111111111111 122467898899988
Q ss_pred HHHHhhcCcchHHhHHHHHHHhhcCCCCCChh---HHHHHHHHHHHHHccC------c-cchhhhHHHH-----HHHHhh
Q 006912 376 DVLSNVFGDEILPTLMPVIQAKLSASGDEAWK---DREAAVLALGAIAEGC------I-KGLYPHLSEI-----VAFLIP 440 (626)
Q Consensus 376 ~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~---~r~aal~~l~~l~~~~------~-~~~~~~l~~l-----~~~l~~ 440 (626)
+.+.....+ .+.+++.+-+-+.. .-|+ .|-..+..=|.++.+- + +.....-..+ ...++.
T Consensus 306 G~~~~vSee----~i~QTLdKKlms~l-RRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~Vh 380 (823)
T KOG2259|consen 306 GEFEQVSEE----IIQQTLDKKLMSRL-RRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVH 380 (823)
T ss_pred chHHHhHHH----HHHHHHHHHHhhhh-hhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeee
Confidence 877665543 22233333322211 0021 1222222222222211 0 0111111122 345788
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHH
Q 006912 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEI 520 (626)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~ 520 (626)
.++|.-..||.+|+..++.++.. .+.+-...+..+..+++|+...||..|..+|..+..... .=+.
T Consensus 381 GlEDEf~EVR~AAV~Sl~~La~s---------sP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-----i~ee 446 (823)
T KOG2259|consen 381 GLEDEFYEVRRAAVASLCSLATS---------SPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-----IREE 446 (823)
T ss_pred echHHHHHHHHHHHHHHHHHHcC---------CCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-----ecHH
Confidence 99999999999999999988863 345567788899999999999999999999999988732 1133
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCCCCccchHHHHHHHHHHHh
Q 006912 521 ILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQAL 596 (626)
Q Consensus 521 i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~l~~~~ 596 (626)
.++.++..+.+.+.++++.+-+.|+.. .-. ....+...+..++..++..+. |++ ..+.|++.+++.-
T Consensus 447 ql~~il~~L~D~s~dvRe~l~elL~~~----~~~--d~~~i~m~v~~lL~~L~kyPq-Drd--~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 447 QLRQILESLEDRSVDVREALRELLKNA----RVS--DLECIDMCVAHLLKNLGKYPQ-DRD--EILRCMGRIGQNH 513 (823)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc----CCC--cHHHHHHHHHHHHHHhhhCCC-CcH--HHHHHHHHHhccC
Confidence 444455666666666666555554432 211 114566666667777776652 333 6777777776643
No 80
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.72 E-value=1.5e-05 Score=78.44 Aligned_cols=310 Identities=16% Similarity=0.112 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhc-CcCchHHHHHHHHHHhccCChhHH
Q 006912 70 AAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHM 148 (626)
Q Consensus 70 ~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~-~~~~~~~ll~~l~~~l~~~~~~~r 148 (626)
.|++++-+.+..... -+++.+.++++.|-..+.+.-+.|..-+++++..++... +++.....+..|...+.++....|
T Consensus 242 ~a~V~lvr~~~~ll~-~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~r 320 (898)
T COG5240 242 LAGVLLVRATVELLK-ENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLR 320 (898)
T ss_pred hhheehHHHHHHHHH-hChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHH
Confidence 444555544443322 256677888888888998888888888888888888665 667778888999999999999999
Q ss_pred hHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHH
Q 006912 149 EGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL 228 (626)
Q Consensus 149 ~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~ 228 (626)
..|+++|..+.-..|..+. ..-+.+-.+++|.+-.+... ++..+...-.++ .+..+++.+.+
T Consensus 321 FsA~Riln~lam~~P~kv~------------vcN~evEsLIsd~Nr~Isty---AITtLLKTGt~e---~idrLv~~I~s 382 (898)
T COG5240 321 FSAMRILNQLAMKYPQKVS------------VCNKEVESLISDENRTISTY---AITTLLKTGTEE---TIDRLVNLIPS 382 (898)
T ss_pred HHHHHHHHHHHhhCCceee------------ecChhHHHHhhcccccchHH---HHHHHHHcCchh---hHHHHHHHHHH
Confidence 9999999999888776432 11223444555555444443 444444433222 23333555555
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc-CCcchhHHhhhhhhH
Q 006912 229 LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA-QLPHENLKEFLPRLV 307 (626)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~l~~li 307 (626)
++.|-+...+.-++.++..+.-..|..-..++.-+...++ +...-+.+..+++.+....+. +...+ ..+
T Consensus 383 fvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~---~eGg~eFK~~~Vdaisd~~~~~p~skE-------raL 452 (898)
T COG5240 383 FVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLL---QEGGLEFKKYMVDAISDAMENDPDSKE-------RAL 452 (898)
T ss_pred HHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHH---hcccchHHHHHHHHHHHHHhhCchHHH-------HHH
Confidence 5555444555566666666666665543333332222222 223345566666666666554 11111 112
Q ss_pred HHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcch-
Q 006912 308 PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI- 386 (626)
Q Consensus 308 ~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~- 386 (626)
..+..++.+. ..-..+...|..+++.-|..-
T Consensus 453 e~LC~fIEDc------------------------------------------------ey~~I~vrIL~iLG~EgP~a~~ 484 (898)
T COG5240 453 EVLCTFIEDC------------------------------------------------EYHQITVRILGILGREGPRAKT 484 (898)
T ss_pred HHHHHHHhhc------------------------------------------------chhHHHHHHHHHhcccCCCCCC
Confidence 2221111000 012234455555555443311
Q ss_pred HHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q 006912 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (626)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (626)
=...+.++...+--.+ .-+|.||+.||..++-...+.+.+ ..+...+-.+++|.+..||..|..++..+-
T Consensus 485 P~~yvrhIyNR~iLEN---~ivRsaAv~aLskf~ln~~d~~~~--~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 485 PGKYVRHIYNRLILEN---NIVRSAAVQALSKFALNISDVVSP--QSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cchHHHHHHHHHHHhh---hHHHHHHHHHHHHhccCccccccH--HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 1123334443333344 678888888888877765433211 123344555677888888888877765543
No 81
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=0.00015 Score=73.40 Aligned_cols=276 Identities=11% Similarity=0.119 Sum_probs=168.6
Q ss_pred HHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccC--ChhHHhHHHHHHHHHhhhchhccccC
Q 006912 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQVLDSD 169 (626)
Q Consensus 92 ~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~--~~~~r~~~l~~l~~l~~~~~~~~~~~ 169 (626)
..+.+.+..-|.+.++.....+.++++++..++.... +-+.+-+.+-++ .+-+|+.+..||..+++..++...
T Consensus 110 klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea---~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~-- 184 (938)
T KOG1077|consen 110 KLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEA---FADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN-- 184 (938)
T ss_pred HHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHH---hhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC--
Confidence 3344444445556778888888899999987753322 223444555554 346899999999999998876543
Q ss_pred CCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHH---------------------------HH
Q 006912 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD---------------------------QY 222 (626)
Q Consensus 170 ~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~---------------------------~~ 222 (626)
.......+...|.|.+..|..++...+..++...|+.....++ .|
T Consensus 185 --------~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW 256 (938)
T KOG1077|consen 185 --------PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW 256 (938)
T ss_pred --------hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence 2567778888999988877777777777777766654322111 11
Q ss_pred -----HHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchh----------------------------hhHHHHHHHHHh
Q 006912 223 -----LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE----------------------------PHLRNLFEYMLQ 269 (626)
Q Consensus 223 -----l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----------------------------~~l~~l~~~~~~ 269 (626)
++.|...-...++.+|....+++..+..+..+... ..+..-+..+..
T Consensus 257 L~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~ 336 (938)
T KOG1077|consen 257 LQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQ 336 (938)
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 12222222234566777777777777654331100 001111122233
Q ss_pred hccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCC
Q 006912 270 VNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (626)
Q Consensus 270 ~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 349 (626)
.+++.+..+|..|++.+..++..+.....++.|.+.++..+ +. +.
T Consensus 337 fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sL----kt-er------------------------------ 381 (938)
T KOG1077|consen 337 FLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSL----KT-ER------------------------------ 381 (938)
T ss_pred HhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHh----cc-cc------------------------------
Confidence 34566667788888888877776556666776666555554 10 00
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhh
Q 006912 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYP 429 (626)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~ 429 (626)
+.++|+.|.+.|-.++..-.. ..++.-+.+++...+ ...|+-...-+.-+++....+..-
T Consensus 382 --------------DvSirrravDLLY~mcD~~Na---k~IV~elLqYL~tAd---~sireeivlKvAILaEKyAtDy~W 441 (938)
T KOG1077|consen 382 --------------DVSIRRRAVDLLYAMCDVSNA---KQIVAELLQYLETAD---YSIREEIVLKVAILAEKYATDYSW 441 (938)
T ss_pred --------------chHHHHHHHHHHHHHhchhhH---HHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHHhcCCcch
Confidence 125888888888877665543 234444555566677 888888888888888877655555
Q ss_pred hHHHHH
Q 006912 430 HLSEIV 435 (626)
Q Consensus 430 ~l~~l~ 435 (626)
|+..++
T Consensus 442 yVdviL 447 (938)
T KOG1077|consen 442 YVDVIL 447 (938)
T ss_pred hHHHHH
Confidence 555444
No 82
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.66 E-value=0.00028 Score=77.55 Aligned_cols=164 Identities=21% Similarity=0.269 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHhhc-CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHh
Q 006912 110 RSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (626)
Q Consensus 110 r~~~~~~l~~i~~~~-~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 188 (626)
+..+..+...++... ....+..++..++..+..+...+|-.|+.||..+++.-+..+. .+.+-..+-.-
T Consensus 794 ~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~----------~~dvq~~Vh~R 863 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS----------RPDVQEAVHGR 863 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc----------CHHHHHHHHHh
Confidence 334444444444332 4466778888888888888889999999999999998776543 25555567777
Q ss_pred cCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHH
Q 006912 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYML 268 (626)
Q Consensus 189 l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~ 268 (626)
+.|++..||.+|++.++.++-..|+... ++...+.+.+.|+...||+.+++.+..+++..|.+- .+..++.-++
T Consensus 864 ~~DssasVREAaldLvGrfvl~~~e~~~----qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~--~i~~~cakml 937 (1692)
T KOG1020|consen 864 LNDSSASVREAALDLVGRFVLSIPELIF----QYYDQIIERILDTGVSVRKRVIKILRDICEETPDFS--KIVDMCAKML 937 (1692)
T ss_pred hccchhHHHHHHHHHHhhhhhccHHHHH----HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChh--hHHHHHHHHH
Confidence 8899999999999999999877665544 445566677789999999999999999999998863 2355666666
Q ss_pred hhccCCChHHHHHHHhHHHHh
Q 006912 269 QVNKDTDDDVALEACEFWHSY 289 (626)
Q Consensus 269 ~~~~~~~~~v~~~a~~~l~~l 289 (626)
....|++..+...+.+.+..+
T Consensus 938 rRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 938 RRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHhccchhHHHHHHHHHHHHH
Confidence 667777777777777766554
No 83
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=0.0004 Score=70.43 Aligned_cols=256 Identities=13% Similarity=0.122 Sum_probs=147.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhcC---CChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHH
Q 006912 19 RLLEQQISPSSTADKSQIWQQLQQYSQF---PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (626)
Q Consensus 19 ~~l~~~~s~d~~~~r~~a~~~L~~~~~~---p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~ 95 (626)
++-+++.|.|+. ...-|......+... ..|..-+..+|.+. +..+.+|+.||.+|-+..++.-+-++++.+.
T Consensus 115 ~iknDL~srn~~-fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~-~~~~~vkqkaALclL~L~r~spDl~~~~~W~--- 189 (938)
T KOG1077|consen 115 SIKNDLSSRNPT-FVCLALHCIANIGSREMAEAFADDIPKLLVSG-SSMDYVKQKAALCLLRLFRKSPDLVNPGEWA--- 189 (938)
T ss_pred HHHhhhhcCCcH-HHHHHHHHHHhhccHhHHHHhhhhhHHHHhCC-cchHHHHHHHHHHHHHHHhcCccccChhhHH---
Confidence 344555566666 666666666655431 12333444566553 7778899999999988877644444554444
Q ss_pred HhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCc---hHHHHHHHHHHhcc-------------CChhHHhHHHHHHHHHh
Q 006912 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG---WLELLQALVTCLDS-------------NDINHMEGAMDALSKIC 159 (626)
Q Consensus 96 ~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~---~~~ll~~l~~~l~~-------------~~~~~r~~~l~~l~~l~ 159 (626)
+.++.+|.|.+-.|-.++...+..++++.++.+ .+.-+..|...... +.|-.....+.+|..+
T Consensus 190 ~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~- 268 (938)
T KOG1077|consen 190 QRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY- 268 (938)
T ss_pred HHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-
Confidence 367777878777777777778888887754322 23223333333321 1233333344444332
Q ss_pred hhchhccccCCCCCccchhhhhHHHHHHhcCCC-------ChHHHHHHH-HHHHHHHhccchHHHHhHHHHHHHHHHhcC
Q 006912 160 EDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-------HTSLRKLSL-GSVNQFIMLMPSALFVSMDQYLQGLFLLSN 231 (626)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-------~~~vr~~al-~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 231 (626)
+..-++.. ...+.+++..++...+++ +...+.+++ +++.-++...++ .+.+...+..|.+++.
T Consensus 269 ---p~~~D~~~----r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e--~~ll~~~~~~Lg~fls 339 (938)
T KOG1077|consen 269 ---PTPEDPST----RARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSE--PELLSRAVNQLGQFLS 339 (938)
T ss_pred ---CCCCCchH----HHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHhh
Confidence 22111111 123455566666655531 112223332 233333222221 1233455778888889
Q ss_pred CCCHHHHHHHHHHHHHHHhhCc--cchhhhHHHHHHHHHhhcc-CCChHHHHHHHhHHHHhhccC
Q 006912 232 DPSAEVRKLVCAAFNLLIEVRP--SFLEPHLRNLFEYMLQVNK-DTDDDVALEACEFWHSYFEAQ 293 (626)
Q Consensus 232 ~~~~~~~~~~~~~l~~l~~~~~--~~~~~~l~~l~~~~~~~~~-~~~~~v~~~a~~~l~~l~~~~ 293 (626)
+.+.++|..+++.++.++.... +.++.|.+. ++..++ +.|-++|+.|++.|..+|+.+
T Consensus 340 ~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~----Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 340 HRETNIRYLALESMCKLASSEFSIDAVKKHQDT----IINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred cccccchhhhHHHHHHHHhccchHHHHHHHHHH----HHHHhccccchHHHHHHHHHHHHHhchh
Confidence 9999999999999999987633 334555443 334555 678889999999999999873
No 84
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=0.00014 Score=73.09 Aligned_cols=300 Identities=15% Similarity=0.125 Sum_probs=185.4
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhcc
Q 006912 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (626)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (626)
+..-+.....+.++++|..|+..+..+.+.+. .-..+.....+.+.|....||.+|++.+..+....
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-------------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~ 265 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFK-------------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRC 265 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccccc-------------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence 34447777888999999999999988877222 12566777888999999999999999999888776
Q ss_pred chHH------HHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHH--HHH
Q 006912 212 PSAL------FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVAL--EAC 283 (626)
Q Consensus 212 ~~~~------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~--~a~ 283 (626)
|... .......+..++..+.|.+..+|..|.+.|+.+-....+++...++. +.+.+ .|. .|-
T Consensus 266 p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK------Klms~----lRRkr~ah 335 (823)
T KOG2259|consen 266 PAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDK------KLMSR----LRRKRTAH 335 (823)
T ss_pred CCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHH------HHhhh----hhhhhhcc
Confidence 4211 12334557788888999999999999999988776655544332221 11110 000 000
Q ss_pred ---hHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhh-ccCCCCCCCC--CCCccc-ccccCCCCCCCCC
Q 006912 284 ---EFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAE-EDESLPDRDQ--DLKPRF-HSSRLHGSENPED 356 (626)
Q Consensus 284 ---~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~-~~e~~~~~~~--~~~~~~-~~~~~~~~~~~~~ 356 (626)
.-+.+-.+. ... ..|.+| +.| ++..+ .+-|.- ....++|.
T Consensus 336 krpk~l~s~Gew----SsG----------------------k~~~advpse--e~d~~~~siI~sGACGA~VhGl----- 382 (823)
T KOG2259|consen 336 KRPKALYSSGEW----SSG----------------------KEWNADVPSE--EDDEEEESIIPSGACGALVHGL----- 382 (823)
T ss_pred cchHHHHhcCCc----ccC----------------------ccccccCchh--hccccccccccccccceeeeec-----
Confidence 000000000 000 001110 000 00000 000000 00001111
Q ss_pred CCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHH
Q 006912 357 DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVA 436 (626)
Q Consensus 357 ~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~ 436 (626)
++..+.+|.+|...+..++...|. +-...+.++..++++.. -.+|.-|+.++..++.... .-++.++
T Consensus 383 ----EDEf~EVR~AAV~Sl~~La~ssP~-FA~~aldfLvDMfNDE~---~~VRL~ai~aL~~Is~~l~-----i~eeql~ 449 (823)
T KOG2259|consen 383 ----EDEFYEVRRAAVASLCSLATSSPG-FAVRALDFLVDMFNDEI---EVVRLKAIFALTMISVHLA-----IREEQLR 449 (823)
T ss_pred ----hHHHHHHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHHhe-----ecHHHHH
Confidence 122457999999999999887765 23356788889999987 8899999999999988742 2234578
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Q 006912 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (626)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (626)
.++..+.|.++.||.+.-..|+..- + .-.+-+..++..+++++.. -|.-|.....|++.|-++-
T Consensus 450 ~il~~L~D~s~dvRe~l~elL~~~~--~-------~d~~~i~m~v~~lL~~L~k-yPqDrd~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 450 QILESLEDRSVDVREALRELLKNAR--V-------SDLECIDMCVAHLLKNLGK-YPQDRDEILRCMGRIGQNH 513 (823)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC--C-------CcHHHHHHHHHHHHHHhhh-CCCCcHHHHHHHHHHhccC
Confidence 8889999999999999876665321 1 1234456667777777653 3555666777777765543
No 85
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.61 E-value=6.4e-08 Score=66.61 Aligned_cols=55 Identities=42% Similarity=0.664 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (626)
|.+|.+|+.+||.++...++...++++.+++.+...++|+++.||.+|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999888888999999999999999999999999999999975
No 86
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=0.00044 Score=71.13 Aligned_cols=287 Identities=12% Similarity=0.064 Sum_probs=140.4
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhh
Q 006912 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (626)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 258 (626)
..+++.+-..+.+.+..|-..|.+++..+-...+..+.+ -+..+-.++..+....|-.|.+.|+.++..+|+....
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 456666667777777778888888777766555544444 2344445566778889999999999999998876543
Q ss_pred hHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCch--hhhhhhhhccCCCCCCC
Q 006912 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADD--DESLVEAEEDESLPDRD 336 (626)
Q Consensus 259 ~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~--d~~~~~~~~~e~~~~~~ 336 (626)
.-.++-+ ...+.+..+...|+..+..-....... .+.+-++..+.-+.+.-. .++-...-.. .-|.+.
T Consensus 320 cN~elE~----lItd~NrsIat~AITtLLKTG~e~sv~-----rLm~qI~~fv~disDeFKivvvdai~sLc~-~fp~k~ 389 (865)
T KOG1078|consen 320 CNLDLES----LITDSNRSIATLAITTLLKTGTESSVD-----RLMKQISSFVSDISDEFKIVVVDAIRSLCL-KFPRKH 389 (865)
T ss_pred cchhHHh----hhcccccchhHHHHHHHHHhcchhHHH-----HHHHHHHHHHHhccccceEEeHHHHHHHHh-hccHHH
Confidence 2222221 223344444444443333322111110 111111111111110000 0000000000 000000
Q ss_pred CCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHH
Q 006912 337 QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLAL 416 (626)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l 416 (626)
...-+++.... .+.+.+...++..+++..+....++. -...+..++.++.+. ..+.-+.+.+
T Consensus 390 ~~~m~FL~~~L------------r~eGg~e~K~aivd~Ii~iie~~pds-Ke~~L~~LCefIEDc-----e~~~i~~rIL 451 (865)
T KOG1078|consen 390 TVMMNFLSNML------------REEGGFEFKRAIVDAIIDIIEENPDS-KERGLEHLCEFIEDC-----EFTQIAVRIL 451 (865)
T ss_pred HHHHHHHHHHH------------HhccCchHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHhc-----cchHHHHHHH
Confidence 00000000000 00111223444555555544433321 112333444444442 2344455555
Q ss_pred HHHHccCccchh--hhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHH
Q 006912 417 GAIAEGCIKGLY--PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKR 494 (626)
Q Consensus 417 ~~l~~~~~~~~~--~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~ 494 (626)
+.++..++.... .|+ .++..+.-=.+..||.+|..++.+++.. .....+.+...+..++.|.+..
T Consensus 452 hlLG~EgP~a~~Pskyi----r~iyNRviLEn~ivRaaAv~alaKfg~~---------~~~l~~sI~vllkRc~~D~Dde 518 (865)
T KOG1078|consen 452 HLLGKEGPKAPNPSKYI----RFIYNRVILENAIVRAAAVSALAKFGAQ---------DVVLLPSILVLLKRCLNDSDDE 518 (865)
T ss_pred HHHhccCCCCCCcchhh----HHHhhhhhhhhhhhHHHHHHHHHHHhcC---------CCCccccHHHHHHHHhcCchHH
Confidence 555555543222 233 2333333335788999999999998821 2333456667778889999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 006912 495 VQEAACSAFATLEEEA 510 (626)
Q Consensus 495 v~~~a~~al~~l~~~~ 510 (626)
||.+|..++..+-+.-
T Consensus 519 vRdrAtf~l~~l~~~~ 534 (865)
T KOG1078|consen 519 VRDRATFYLKNLEEKD 534 (865)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 9999999998887443
No 87
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.58 E-value=0.00054 Score=71.59 Aligned_cols=180 Identities=16% Similarity=0.106 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~ 485 (626)
+..|.+|+.++...+ ..+-+.+.++.++..+.+...+.+..|-...+.+|+..++.-+++ -...-..+.|.++
T Consensus 505 ~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef-----~as~~skI~P~~i 577 (1005)
T KOG2274|consen 505 PPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEF-----AASMESKICPLTI 577 (1005)
T ss_pred CchhHHHHHHHHhcc--CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhh-----hhhhhcchhHHHH
Confidence 667788777776665 234567888889999999988889999999999999999876654 1112223333333
Q ss_pred HHhc--cCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHhccccCChh
Q 006912 486 KRIL--DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR----RNLRIVYDAIGTLADAVGFELNQPV 559 (626)
Q Consensus 486 ~~l~--d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~----~~~~~~~~~l~~i~~~~~~~~~~~~ 559 (626)
..+. .++|.|...+-.++..++.. .....|+....+|.+++.++...+ .....+++.|..+++..++.+.+.
T Consensus 578 ~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~- 655 (1005)
T KOG2274|consen 578 NLFLKYSEDPQVASLAQDLFEELLQI-AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNL- 655 (1005)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHH-
Confidence 3322 34678888888888888763 233456777788888888877653 345589999999999999887543
Q ss_pred hhhhhhHHHHHHHhcCCCCCCccchHHHHHHHHHHH
Q 006912 560 YLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQA 595 (626)
Q Consensus 560 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~l~~~ 595 (626)
+....+|++.+..-+ ++++..+..+-+|+..+...
T Consensus 656 l~~~~FpaVak~tlH-sdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 656 LICYAFPAVAKITLH-SDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHhHHhHhheee-cCChHHHHhHHHHHHHHHhc
Confidence 778888887755433 22333345666776665554
No 88
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.54 E-value=3.4e-07 Score=75.53 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=88.5
Q ss_pred HHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHH-HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhc
Q 006912 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI 468 (626)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 468 (626)
+++.+.+.+.+++ |..|..++.+++.++..........+. .+++.++..+.|+++.++..+++++++++...+..
T Consensus 8 ~i~~l~~~l~~~~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~- 83 (120)
T cd00020 8 GLPALVSLLSSSD---ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN- 83 (120)
T ss_pred ChHHHHHHHHcCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-
Confidence 5677778888888 999999999999999875443334444 67889999999999999999999999999765321
Q ss_pred CCCchhhhH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 006912 469 GHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (626)
Q Consensus 469 ~~~~~~~~~-~~ll~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (626)
..... ..+++.+.+.+++.+..++..++.+|.+++
T Consensus 84 ----~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 84 ----KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred ----HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22222 347899999999889999999999999886
No 89
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.49 E-value=0.0029 Score=66.68 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHH
Q 006912 32 DKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRS 111 (626)
Q Consensus 32 ~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~ 111 (626)
.+.+..+.+.++....+...++.+++..-.+.+.++|...-.++.+ |.+..|+..-...+.+.+-+.++++.+|-
T Consensus 36 kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~-----yak~~P~~~lLavNti~kDl~d~N~~iR~ 110 (757)
T COG5096 36 KIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLER-----YAKLKPELALLAVNTIQKDLQDPNEEIRG 110 (757)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----HhccCHHHHHHHHHHHHhhccCCCHHHHH
Confidence 4444444456666555555555666653237788888887777753 34455666667778888889999999999
Q ss_pred HHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCC
Q 006912 112 TVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (626)
Q Consensus 112 ~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~ 191 (626)
.+.+.++.+- -+.-|+.+++.+.++++++.+.+|+.|..++..+.+.-++.... .+....+...+.|
T Consensus 111 ~AlR~ls~l~---~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~----------~g~~~~l~~l~~D 177 (757)
T COG5096 111 FALRTLSLLR---VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHE----------LGLIDILKELVAD 177 (757)
T ss_pred HHHHHHHhcC---hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhc----------ccHHHHHHHHhhC
Confidence 9777766554 35678999999999999999999999999999998776654321 2234445566779
Q ss_pred CChHHHHHHHHHHHHHHh
Q 006912 192 PHTSLRKLSLGSVNQFIM 209 (626)
Q Consensus 192 ~~~~vr~~al~~l~~~~~ 209 (626)
+++.|...|+-++..+-.
T Consensus 178 ~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 178 SDPIVIANALASLAEIDP 195 (757)
T ss_pred CCchHHHHHHHHHHHhch
Confidence 999999999988877753
No 90
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.45 E-value=4.2e-07 Score=78.22 Aligned_cols=135 Identities=21% Similarity=0.333 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccC--------CCCCccchh
Q 006912 107 RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD--------VPGLAECPI 178 (626)
Q Consensus 107 ~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~--------~~~~~~~~~ 178 (626)
+.||+.++.+++.++.+++|..||++++.+.+.+++ ++.....++.+|..+.+++.+..... +...+....
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999988 57788899999999998887511100 000111234
Q ss_pred hhhHHHHHHhcCCCC----hHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006912 179 NIFLPRLLQFFQSPH----TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF 245 (626)
Q Consensus 179 ~~il~~l~~~l~~~~----~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l 245 (626)
+.++..+.+.++... ..+...+++|+.+++.+.+...... .++++.+++.+.++ +.+..|++||
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 555555555555432 7889999999999999987655433 24788888888654 4578888775
No 91
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.45 E-value=0.0013 Score=69.14 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=100.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHH
Q 006912 18 CRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILA-RAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (626)
Q Consensus 18 ~~~l~~~~s~d~~~~r~~a~~~L~~~~~-~p~~~~~l~~il~-~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~ 95 (626)
-.+++.+.+-|.+ .++-..-+|..+.+ +|+-....++.+. +.++.++.+|.+|...+... =.++....+.
T Consensus 58 ~dViK~~~trd~E-lKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-------~~~el~~~~~ 129 (757)
T COG5096 58 PDVIKNVATRDVE-LKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-------RVKELLGNII 129 (757)
T ss_pred HHHHHHHHhcCHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-------ChHHHHHHHH
Confidence 3455555667777 99999999999866 7875555555443 33588999999998877521 1234556677
Q ss_pred HhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHH--HHHHHHHHhccCChhHHhHHHHHHHHHhhh
Q 006912 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLE--LLQALVTCLDSNDINHMEGAMDALSKICED 161 (626)
Q Consensus 96 ~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~--ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~ 161 (626)
..+.++++++.+.||+.|+-+++.+.+.+. +..++ +...+...+.+.+|.+...|+.+|..+...
T Consensus 130 ~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 130 DPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 888889999999999999999999998863 33333 455556666789999999999999888766
No 92
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.43 E-value=0.00039 Score=67.33 Aligned_cols=467 Identities=13% Similarity=0.131 Sum_probs=249.2
Q ss_pred CCCHHHHHHHHHHHHHHHH--------HhhccCChhHHHHHH-HhHhhhhhCCcHHHHHHHHHHHHHHHhh---------
Q 006912 62 GKSVEIRQAAGLLLKNNLR--------TAYKSMSPSNQQYIK-SELLPCLGAADRHIRSTVGTIVSVVVQL--------- 123 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~--------~~~~~l~~~~~~~i~-~~L~~~l~~~~~~vr~~~~~~l~~i~~~--------- 123 (626)
+....+|+.|..++...+. .+|..+-|+.-+.=- ..+.-.|++++..-|..+.++.+.+...
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~ 86 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAE 86 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 4556788888777765543 467765444333211 2334467889999998888888877642
Q ss_pred -cCcCch-----------HHHHHHHHHHhc-cCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcC
Q 006912 124 -GGIAGW-----------LELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (626)
Q Consensus 124 -~~~~~~-----------~~ll~~l~~~l~-~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 190 (626)
.++..+ -++...++..+. ...+.+.-..+.||..++...+..-.. ...+..++..+..++.
T Consensus 87 ~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~------~~~~~~~~~~ik~~i~ 160 (728)
T KOG4535|consen 87 DTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLK------LSLLTKVWNQIKPYIR 160 (728)
T ss_pred ccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHH------HHHHHHHHHHHHHHhh
Confidence 122222 122222333332 234556667888888888887754111 1335667777888899
Q ss_pred CCChHHHHHHHHHHHHHHhcc---chHHH-------------Hh--HHHHHHHHHH------------------------
Q 006912 191 SPHTSLRKLSLGSVNQFIMLM---PSALF-------------VS--MDQYLQGLFL------------------------ 228 (626)
Q Consensus 191 ~~~~~vr~~al~~l~~~~~~~---~~~~~-------------~~--~~~~l~~l~~------------------------ 228 (626)
+.|+.||..++..+..++... |+.-. ++ -+++.+.+..
T Consensus 161 ~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~ 240 (728)
T KOG4535|consen 161 HKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRL 240 (728)
T ss_pred cCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeee
Confidence 999999999999888887652 21100 00 0122222211
Q ss_pred --------------------hcC---CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhH
Q 006912 229 --------------------LSN---DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (626)
Q Consensus 229 --------------------~~~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~ 285 (626)
.+. .| ..+|.++++.|..++...+ ....|.-++...+..++.+.++++...+..+
T Consensus 241 ~~~i~~~~~~~s~~~~~~~~~~~~~~~p-s~~rle~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~l 318 (728)
T KOG4535|consen 241 CISIVVLPKEDSCSGSDAGSAAGSTYEP-SPMRLEALQVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSIQLHGAKL 318 (728)
T ss_pred eeeeeecCCccccchhhHHhhhcCccCC-chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHH
Confidence 000 00 1355566666655544322 2334444555555566667777776666655
Q ss_pred HHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccc
Q 006912 286 WHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW 365 (626)
Q Consensus 286 l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (626)
+..+... +..... + +-|+.+ ..-.|+|......+..+...| ....
T Consensus 319 l~~lg~~-----------------lv~~~~--P---~~~k~~---------~q~~~fw~~~l~~p~~~~~YD----s~~~ 363 (728)
T KOG4535|consen 319 LEELGTG-----------------LIQQYK--P---DSTKAP---------DQRAPFWTMMLNGPLPRALYD----SEHP 363 (728)
T ss_pred HHHHHHH-----------------HhhhcC--C---Ccccch---------hhhccHHHHHccCCChhhhhh----hcCC
Confidence 5554322 100000 0 000000 000011111111111111000 1112
Q ss_pred cHHHHHHHHHHHHHhhc----CcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc-cchhhhHHHHHHHHhh
Q 006912 366 NLRKCSAAALDVLSNVF----GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIP 440 (626)
Q Consensus 366 ~~r~~a~~~l~~l~~~~----~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~~l~~ 440 (626)
+..-++..++..++... ++ --....+.+.....+ .++-.+|.+|+++++.+.-+-. ..-..+..+....++.
T Consensus 364 Tl~~s~Cdals~i~~~~f~~lpn-~~~T~~~~Fl~GC~d--~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~ 440 (728)
T KOG4535|consen 364 TLQASACDALSSILPEAFSNLPN-DRQTLCITFLLGCND--SKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILM 440 (728)
T ss_pred CchhHHHHHHhhcCchhhcCCCC-cchhhhHHHHhcccc--hHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHH
Confidence 34444555555544332 22 112344445444443 2237788899988877654321 2224567777888899
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHhhhcCCC--chhhhHHHHHHHHHHHhc--c-CCHHHHHHHHHHHHHHHHHhccccc
Q 006912 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQ--NGREQFEKVLMGLLKRIL--D-TNKRVQEAACSAFATLEEEAAEELA 515 (626)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~--~~~~~~~~ll~~l~~~l~--d-~~~~v~~~a~~al~~l~~~~~~~~~ 515 (626)
.+.|..-.+|..++|++|.+...+...+..+ ....+....+...+..-. + .+.+|+..|..+|+++.........
T Consensus 441 sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~ 520 (728)
T KOG4535|consen 441 SLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEK 520 (728)
T ss_pred HhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhh
Confidence 9999999999999999999998775431110 112223333333333221 2 2578999999999999876654444
Q ss_pred chHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhc
Q 006912 516 PRLEIILQHLMMAFGK-----YQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQ 574 (626)
Q Consensus 516 ~~l~~i~~~l~~~l~~-----~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ 574 (626)
+-+..+++.=+..+.. ..-+++-+++-+++++.+.-.-.+.+-++.+++++.|.....+
T Consensus 521 ~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~ 584 (728)
T KOG4535|consen 521 PTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTS 584 (728)
T ss_pred ccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHH
Confidence 4444444432222211 1235677999999999865332232336888999888877664
No 93
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.39 E-value=1.3e-05 Score=70.77 Aligned_cols=133 Identities=18% Similarity=0.317 Sum_probs=104.2
Q ss_pred ChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHH
Q 006912 144 DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYL 223 (626)
Q Consensus 144 ~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l 223 (626)
++.+|..++.+++.++..++.. ++..+|.+...|.|+++.||..|+.++.+++....-... ..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~------------ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~ 65 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL------------VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLF 65 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH------------HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhh
Confidence 4678999999999999988854 477899999999999999999999999999865322222 2335
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhh-CccchhhhHHHHHHHHHhhcc-----CCChHHHHHHHhHHHHhhc
Q 006912 224 QGLFLLSNDPSAEVRKLVCAAFNLLIEV-RPSFLEPHLRNLFEYMLQVNK-----DTDDDVALEACEFWHSYFE 291 (626)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~~l~~~~~~~~~-----~~~~~v~~~a~~~l~~l~~ 291 (626)
..+...+.|+++++|..|..++..+... .+..+..++.+++..+-...+ ..+.+-|...+.++.....
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 6666777999999999999999999988 777777777776665554433 2456668888888888766
No 94
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.38 E-value=9.4e-05 Score=78.95 Aligned_cols=208 Identities=18% Similarity=0.208 Sum_probs=158.8
Q ss_pred chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc-cchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHH
Q 006912 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (626)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (626)
++++.+-+.+...+.+++ |+.|..|+..+..+.+... .....+...+...+-..+.|.|..|...|+.+|+.++..
T Consensus 249 di~~ki~~~l~t~~~s~~---WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKK---WKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred hhhhhcChHHHHhhhccc---hHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 667778888888899999 9999999999888877665 223455555666666677899999999999999999988
Q ss_pred HhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006912 464 IVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDA 543 (626)
Q Consensus 464 ~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~ 543 (626)
+... ...|...++|.++..+.+..+.++..+..++..++.. -.+..+.+.+...+...+......+...
T Consensus 326 lr~~-----~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~ 394 (815)
T KOG1820|consen 326 LRPL-----FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLL 394 (815)
T ss_pred cchh-----hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 7653 6788999999999999999999999999999998873 3456666667777777777777777888
Q ss_pred HHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCCCCcc-chHHHHHHHHHHHhcc-ccccchHHHHH
Q 006912 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGA-GFTQFAQPVFQ 609 (626)
Q Consensus 544 l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~l~~~~~l~~~~g~-~f~~~~~~i~~ 609 (626)
++......+.......-...+.|.++. +..|.+++. ..+.++++.+.+.+|. .|.-++..+.+
T Consensus 395 l~r~~~~~~~~~~~~~t~~~l~p~~~~---~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 395 LDRKLRKLGPKTVEKETVKTLVPHLIK---HINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred HHHHHhhcCCcCcchhhHHHHhHHHhh---hccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 888888777322111245666665554 344445554 5889999999999998 45567766664
No 95
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=0.0051 Score=63.19 Aligned_cols=396 Identities=14% Similarity=0.108 Sum_probs=216.2
Q ss_pred HhhccCChhHHHHHHHhHhhhhh-----------CCcHHHHHH-------------HHHHHHHHHhhcCcCchHHHHHHH
Q 006912 81 TAYKSMSPSNQQYIKSELLPCLG-----------AADRHIRST-------------VGTIVSVVVQLGGIAGWLELLQAL 136 (626)
Q Consensus 81 ~~~~~l~~~~~~~i~~~L~~~l~-----------~~~~~vr~~-------------~~~~l~~i~~~~~~~~~~~ll~~l 136 (626)
..|+-+.|.-+-.+...+++++. ++++.+|+. ++.++..+..+.+...++++++.+
T Consensus 334 ~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~ 413 (970)
T COG5656 334 QTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFL 413 (970)
T ss_pred hhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHH
Confidence 36776777666666666777663 234566653 233444444444556688889998
Q ss_pred HHHhc-c-------CChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 006912 137 VTCLD-S-------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (626)
Q Consensus 137 ~~~l~-~-------~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (626)
...++ + +++...++++..+..+....... . .+.+. --.-+++.+...++++..-+|..||..+..+-
T Consensus 414 ~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~-s-p~an~---me~fiv~hv~P~f~s~ygfL~Srace~is~~e 488 (970)
T COG5656 414 LSILGQSAATPSNIDNARQAEGALRLLASIKSFITKM-S-PAANV---MEYFIVNHVIPAFRSNYGFLKSRACEFISTIE 488 (970)
T ss_pred HHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccC-c-hHHHH---HHHHHHHHhhHhhcCcccchHHHHHHHHHHHH
Confidence 88883 1 24567789999998887733221 1 01110 11346667778889999999999999998874
Q ss_pred hccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhC--ccchhhhHHHHHHHHHhhccCCChHHHHHHHhHH
Q 006912 209 MLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR--PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (626)
Q Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l 286 (626)
...++. ....++.+...+.+++.+--++.+|.-++..++.+. .+.+..|++.+++-++...++-+-++-..+++-+
T Consensus 489 eDfkd~--~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~f 566 (970)
T COG5656 489 EDFKDN--GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESF 566 (970)
T ss_pred Hhcccc--hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHH
Confidence 333221 122345666677777766678888888887777543 3457788888888888877776655555554433
Q ss_pred HHhhccCCcchhHHhhhhhhHHHHhh----hcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCcccc
Q 006912 287 HSYFEAQLPHENLKEFLPRLVPVLLS----NMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIV 362 (626)
Q Consensus 287 ~~l~~~~~~~~~~~~~l~~li~~l~~----~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (626)
.. . ..+.+.|+...+...+.+ .++..-++ . ++..+-.||
T Consensus 567 Ve---~--fseELspfa~eLa~~Lv~qFlkiaq~l~en------s------------------------~d~~s~vDD-- 609 (970)
T COG5656 567 VE---Y--FSEELSPFAPELAGSLVRQFLKIAQSLLEN------S------------------------SDTSSVVDD-- 609 (970)
T ss_pred HH---H--hHHhhchhHHHHHHHHHHHHHHHHHHHHcC------C------------------------ccccccccH--
Confidence 22 1 223344444444444332 21111000 0 000000000
Q ss_pred ccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhc
Q 006912 363 NVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL 442 (626)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l 442 (626)
-..+|...|..+.. .+..+=+.+. -++.....+.|.+---+
T Consensus 610 ----KqmaasGiL~T~~s------------miLSlen~p~-----------------------vLk~le~slypvi~Fil 650 (970)
T COG5656 610 ----KQMAASGILRTIES------------MILSLENRPL-----------------------VLKYLEVSLYPVISFIL 650 (970)
T ss_pred ----HHHHHHHHHHHHHH------------HHHhcccchH-----------------------HHHHHHHHHHHHHHHHH
Confidence 12222222222111 1111111111 11111222344444444
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHhccccc---chH
Q 006912 443 DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK-RVQEAACSAFATLEEEAAEELA---PRL 518 (626)
Q Consensus 443 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~-~v~~~a~~al~~l~~~~~~~~~---~~l 518 (626)
.+.-..+-+.|+..+..+.-... ...+..-.++..+.+++.++.. .--..+..++.+++--.+..+. -|.
T Consensus 651 kn~i~dfy~Ea~dildg~tf~sk------eI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~ 724 (970)
T COG5656 651 KNEISDFYQEALDILDGYTFMSK------EIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYG 724 (970)
T ss_pred hhhHHHHHHHHHHHHhhhhHHHH------HhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchh
Confidence 45555566666666654432222 1234445555555555555443 3356678889998877765543 366
Q ss_pred HHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHhccccCChhhhhhhhH
Q 006912 519 EIILQHLMMAFGKYQR--RNLRIVYDAIGTLADAVGFELNQPVYLDILMP 566 (626)
Q Consensus 519 ~~i~~~l~~~l~~~~~--~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~ 566 (626)
..+......++..... ...+.+++.+..++-+.+.++.+ .|.+-+..
T Consensus 725 ~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~-qy~plfi~ 773 (970)
T COG5656 725 SICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLS-QYLPLFIS 773 (970)
T ss_pred HHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHH-hhhHHHHH
Confidence 6666777777766555 55668888888888888876643 36664443
No 96
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0054 Score=63.11 Aligned_cols=403 Identities=16% Similarity=0.148 Sum_probs=219.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHH-HHhcCCChHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHhhccC---Ch
Q 006912 14 FNEICRLLEQQISPSSTADKSQIWQQLQ-QYSQFPDFNNYLAFILAR-AEGKSVEIRQAAGLLLKNNLRTAYKSM---SP 88 (626)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~a~~~L~-~~~~~p~~~~~l~~il~~-~~~~~~~~r~~a~~~l~~~i~~~~~~l---~~ 88 (626)
-.++.+.|+. +|.+ .+=.|-+.+. .+.+-..+...+.+|+.- .+..+-++++. +--+|.-+ +.
T Consensus 22 ~~~ik~~Lek---~~~~-~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKL--------ly~ywE~vPKt~~ 89 (948)
T KOG1058|consen 22 EDEIKEKLEK---GDDE-VKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKL--------LYYYWELVPKTDS 89 (948)
T ss_pred hHHHHHHHhc---CChH-HHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHH--------HHHHHHHccccCC
Confidence 3566666664 5655 5555555544 444444454555555431 12445555544 33445321 12
Q ss_pred -----hHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhch
Q 006912 89 -----SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (626)
Q Consensus 89 -----~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~ 163 (626)
...--+.+.+-.-|+++++.+|-...+. +++...++-...++|.+.+++.....-+|+.|+.++..+.+.+.
T Consensus 90 dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRF---LckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~ 166 (948)
T KOG1058|consen 90 DGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRF---LCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE 166 (948)
T ss_pred CcccHHHHHHHHHHHhhhccCchHhhcchhhhh---hhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh
Confidence 1223344455556778999999775444 45544566778899999999999999999999999999988744
Q ss_pred hccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006912 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (626)
Q Consensus 164 ~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 243 (626)
.. -++ .++++..++ ..+.++..++.|+-.|... .|+.-. +++...+..+.+-++......++
T Consensus 167 ~L-~pD--------apeLi~~fL--~~e~DpsCkRNAFi~L~~~---D~ErAl----~Yl~~~idqi~~~~~~LqlViVE 228 (948)
T KOG1058|consen 167 HL-IPD--------APELIESFL--LTEQDPSCKRNAFLMLFTT---DPERAL----NYLLSNIDQIPSFNDSLQLVIVE 228 (948)
T ss_pred hh-cCC--------hHHHHHHHH--HhccCchhHHHHHHHHHhc---CHHHHH----HHHHhhHhhccCccHHHHHHHHH
Confidence 32 222 244444333 2456676777766554332 222211 12222222222223344444455
Q ss_pred HHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhh
Q 006912 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (626)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~ 323 (626)
.+...+...|..-.. .+..++..+...++.|+..|.-.+.++.. .+..++.....++..+..- +
T Consensus 229 ~Irkv~~~~p~~~~~----~i~~i~~lL~stssaV~fEaa~tlv~lS~---~p~alk~Aa~~~i~l~~ke---s------ 292 (948)
T KOG1058|consen 229 LIRKVCLANPAEKAR----YIRCIYNLLSSTSSAVIFEAAGTLVTLSN---DPTALKAAASTYIDLLVKE---S------ 292 (948)
T ss_pred HHHHHHhcCHHHhhH----HHHHHHHHHhcCCchhhhhhcceEEEccC---CHHHHHHHHHHHHHHHHhc---c------
Confidence 555555444444333 34444455555566677766655555443 3445555555544443210 0
Q ss_pred hhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc--CcchHHhHHHHHHHhhcCC
Q 006912 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF--GDEILPTLMPVIQAKLSAS 401 (626)
Q Consensus 324 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~l~~~l~~~l~~~ 401 (626)
|+ ++.-. .+++++... ...++..++--+...+.++
T Consensus 293 ----------------------------dn------------nvklI---vldrl~~l~~~~~~il~~l~mDvLrvLss~ 329 (948)
T KOG1058|consen 293 ----------------------------DN------------NVKLI---VLDRLSELKALHEKILQGLIMDVLRVLSSP 329 (948)
T ss_pred ----------------------------Cc------------chhhh---hHHHHHHHhhhhHHHHHHHHHHHHHHcCcc
Confidence 00 11111 233333322 2245555555566788888
Q ss_pred CCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcC-------CCchHHHHHHHHHHHHHHHHHhhhcCCCchh
Q 006912 402 GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-------DKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (626)
Q Consensus 402 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 474 (626)
+ -.+|.-++...-.++.. ..+.+++..+-..+. |.+-.-|+.-..++...+-.+ +
T Consensus 330 d---ldvr~Ktldi~ldLvss------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~F---------p 391 (948)
T KOG1058|consen 330 D---LDVRSKTLDIALDLVSS------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKF---------P 391 (948)
T ss_pred c---ccHHHHHHHHHHhhhhh------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcC---------h
Confidence 8 88998887665554442 223344444444332 345566887777777666554 4
Q ss_pred hhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHh
Q 006912 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFG 530 (626)
Q Consensus 475 ~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~ 530 (626)
++-..+++.+++.+.|.++.........+...++..+ ..=..++..++..+.
T Consensus 392 ~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p----~Lr~~ii~~l~~~~~ 443 (948)
T KOG1058|consen 392 EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP----NLRASIIEKLLETFP 443 (948)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc----hHHHHHHHHHHHhhh
Confidence 5668889999999999887655555555555444432 222344455544444
No 97
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.34 E-value=7.2e-05 Score=65.99 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=101.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHH
Q 006912 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (626)
Q Consensus 106 ~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l 185 (626)
++.+|..+..+++.++... ++.....+|.+..++.|+++.+|..++.+|..+...-. + +.-..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~--i---------k~k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM--I---------KVKGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc--e---------eehhhhhHHH
Confidence 4689999999999999875 45667778999999999999999999999999876422 1 1125566778
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHhc-cchHHHHhHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHhh
Q 006912 186 LQFFQSPHTSLRKLSLGSVNQFIML-MPSALFVSMDQYLQGLFLLSN-----DPSAEVRKLVCAAFNLLIEV 251 (626)
Q Consensus 186 ~~~l~~~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~-----~~~~~~~~~~~~~l~~l~~~ 251 (626)
+..+.|++++||..|..+|..+... .|..+.+.+++++..+-.... ..+.+-|...+..+...+.+
T Consensus 69 l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 69 LKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 8899999999999999999999876 566666666555555444332 23455667777777766654
No 98
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.32 E-value=1.2e-06 Score=60.23 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 006912 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (626)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l 506 (626)
|.||..|+++||++++..+.. ..++...+++.+...+.|+++.||..|+.+|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~-----~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL-----LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH-----HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHH-----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 689999999999988766653 6789999999999999999999999999999865
No 99
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=0.00024 Score=65.27 Aligned_cols=338 Identities=18% Similarity=0.149 Sum_probs=192.6
Q ss_pred HHHHHHHHHhhc-CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCC
Q 006912 113 VGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (626)
Q Consensus 113 ~~~~l~~i~~~~-~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~ 191 (626)
...++-.+++.. +....|+++|.+...+..++..++..++..++.+++.+...-.+++. --.-.++++.++.++..
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseil---lvvNaeilklildcIgg 139 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEIL---LVVNAEILKLILDCIGG 139 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHH---HHhhhhHHHHHHHHHcC
Confidence 556777777654 55667999999999999999899999999999999988743211110 00126788899999999
Q ss_pred CChHHHHHHHHHHHHHHhccchHHHHhHH-HHHH--HHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHH
Q 006912 192 PHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQ--GLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYM 267 (626)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~l~--~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~ 267 (626)
.+.+|.++|.+.+..+..+ |..+...++ +++. .+.++....+.-+|..+++.+..+....+......- ..++..+
T Consensus 140 eddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlL 218 (524)
T KOG4413|consen 140 EDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLL 218 (524)
T ss_pred CcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence 9999999999999998755 222211111 1111 112222222445778888888888887776543221 2566666
Q ss_pred HhhccC-CChHHHHHHHhHHHHhhccCCcchhHHhhhh--hhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccc
Q 006912 268 LQVNKD-TDDDVALEACEFWHSYFEAQLPHENLKEFLP--RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFH 344 (626)
Q Consensus 268 ~~~~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~--~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~ 344 (626)
..-++. +|--|+..+++....+++.+... +++. .++..+...+.-.+.| |
T Consensus 219 eaElkGteDtLVianciElvteLaeteHgr----eflaQeglIdlicnIIsGadsd--------------------P--- 271 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAETEHGR----EFLAQEGLIDLICNIISGADSD--------------------P--- 271 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHHHhhhh----hhcchhhHHHHHHHHhhCCCCC--------------------c---
Confidence 655655 55667889999999998763222 2222 2333332222211110 0
Q ss_pred cccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcc---------hHHhH---HHHHHHhhcCCCCCChhHHHHH
Q 006912 345 SSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE---------ILPTL---MPVIQAKLSASGDEAWKDREAA 412 (626)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~---------~~~~l---~~~l~~~l~~~~~~~~~~r~aa 412 (626)
.. ...++..+.+.+|.. +...+ +.-.-+++...| +...++|
T Consensus 272 ----------------------fe--kfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnD---pdaieaA 324 (524)
T KOG4413|consen 272 ----------------------FE--KFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMND---PDAIEAA 324 (524)
T ss_pred ----------------------HH--HHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCC---chHHHHH
Confidence 00 122334444444431 11122 222334445566 8899999
Q ss_pred HHHHHHHHccCc-cch-hhhHHHHHHHHhhhcCCCch-HHHHHHHHHHHHHHHHHhh--h-c-CCCchhhhHHHH-----
Q 006912 413 VLALGAIAEGCI-KGL-YPHLSEIVAFLIPLLDDKFP-LIRSISCWTLSRFSKFIVQ--D-I-GHQNGREQFEKV----- 480 (626)
Q Consensus 413 l~~l~~l~~~~~-~~~-~~~l~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~--~-~-~~~~~~~~~~~l----- 480 (626)
+.++|.+..... .++ ...-+--...++....|.+. .-+.+++.++..++..... . + +.......-..+
T Consensus 325 iDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaa 404 (524)
T KOG4413|consen 325 IDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAA 404 (524)
T ss_pred HHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHh
Confidence 999999987653 221 11111123344444445443 2345677777777754321 1 0 000000011111
Q ss_pred -------HHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 006912 481 -------LMGLLKRILDTNKRVQEAACSAFATLEE 508 (626)
Q Consensus 481 -------l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (626)
+..+...++.+.|.++.++.+.+..++.
T Consensus 405 qstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 405 QSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred hccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 1223344566789999999999988874
No 100
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.25 E-value=0.00015 Score=70.14 Aligned_cols=189 Identities=16% Similarity=0.166 Sum_probs=130.8
Q ss_pred CHHHHHHHHHHHHHH-HhhCccchhhhHHHHHHHHHhhccC-CChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHh
Q 006912 234 SAEVRKLVCAAFNLL-IEVRPSFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLL 311 (626)
Q Consensus 234 ~~~~~~~~~~~l~~l-~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~ 311 (626)
..+-++.|+.-|..+ ++..-..-..|..+|+..+++.+.+ .++..+..|+..|..+++. ....+....+-.+.-++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~--Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN--QPARLFDSTEIAICKVL 377 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh--chHhhhchHHHHHHHHH
Confidence 445667777655544 4444445556778888888999888 6777899999999999987 33333333333333222
Q ss_pred hhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHH
Q 006912 312 SNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLM 391 (626)
Q Consensus 312 ~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~ 391 (626)
..-+++.+ -..|.++..|+..++...|...+..+.
T Consensus 378 eaa~ds~~---------------------------------------------~v~~~Aeed~~~~las~~P~~~I~~i~ 412 (516)
T KOG2956|consen 378 EAAKDSQD---------------------------------------------EVMRVAEEDCLTTLASHLPLQCIVNIS 412 (516)
T ss_pred HHHhCCch---------------------------------------------hHHHHHHHHHHHHHHhhCchhHHHHHh
Confidence 22121110 146788888888999998876555555
Q ss_pred HHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc-cchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCC
Q 006912 392 PVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (626)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (626)
|.+.. .| ...-.+++.++..+.+... +.+...++++.|.+++..++.+..||.+|++||-.+...++..
T Consensus 413 ~~Ilt----~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~--- 482 (516)
T KOG2956|consen 413 PLILT----AD---EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME--- 482 (516)
T ss_pred hHHhc----Cc---chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH---
Confidence 55543 44 4555667778999999885 6677899999999999999999999999999998888777622
Q ss_pred CchhhhHHHH
Q 006912 471 QNGREQFEKV 480 (626)
Q Consensus 471 ~~~~~~~~~l 480 (626)
...+|+.++
T Consensus 483 -~mePhL~~L 491 (516)
T KOG2956|consen 483 -EMEPHLEQL 491 (516)
T ss_pred -hhhhHhhhc
Confidence 356666554
No 101
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.25 E-value=0.011 Score=62.51 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=125.0
Q ss_pred cchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCcc-chhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHH
Q 006912 384 DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (626)
Q Consensus 384 ~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (626)
..++..++|.+.+.+.... -..|..-+.+++.+..+.+. .+.|.++.++|.+++.+.=+++.||..+..++..+..
T Consensus 862 QRfF~~ivP~l~~~~~t~~---~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~ 938 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAP---GSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT 938 (1030)
T ss_pred HHHHHhhHHHHHHHhccCC---ccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH
Confidence 3456678888888887544 56778888888888887764 4569999999999999999999999999888877765
Q ss_pred HHhhhcCCCchhhhHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhhhhHHHHH
Q 006912 463 FIVQDIGHQNGREQFEKVLMGLLKRILDTN---KRVQEAACSAFATLEEEAA-EELAPRLEIILQHLMMAFGKYQRRNLR 538 (626)
Q Consensus 463 ~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~---~~v~~~a~~al~~l~~~~~-~~~~~~l~~i~~~l~~~l~~~~~~~~~ 538 (626)
.... -...++..++|.++..=.|++ ..||..|..+|..+.+..+ ..+.||-+.++..+...+++.+..+++
T Consensus 939 ~~~t-----L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~ 1013 (1030)
T KOG1967|consen 939 ESET-----LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRK 1013 (1030)
T ss_pred hccc-----cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHH
Confidence 5443 367889999999988755543 6899999999999999775 678999999999999999998888888
Q ss_pred HHHHHHH
Q 006912 539 IVYDAIG 545 (626)
Q Consensus 539 ~~~~~l~ 545 (626)
.|.++=+
T Consensus 1014 eAv~tR~ 1020 (1030)
T KOG1967|consen 1014 EAVDTRQ 1020 (1030)
T ss_pred HHHHHhh
Confidence 7776643
No 102
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=0.0089 Score=61.58 Aligned_cols=463 Identities=16% Similarity=0.174 Sum_probs=245.9
Q ss_pred CChHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhc-
Q 006912 47 PDFNNYLAFILARAE-GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG- 124 (626)
Q Consensus 47 p~~~~~l~~il~~~~-~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~- 124 (626)
|+....-.+++..-+ ..++++--....+.+..+ .|..++--.-+...+.|...+. .+.+|-+++.|+-.++.+.
T Consensus 188 p~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fV--SWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkM 263 (980)
T KOG2021|consen 188 PKLVNVWYQILKLYENIVNPGLINSCLDCIGSFV--SWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKM 263 (980)
T ss_pred HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHh--hhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCC
Confidence 554444455554322 336666666666666554 3665544333455556666655 6788999999999888653
Q ss_pred CcCchHHHHHHHHHHhc---------cCChhHHhHHHHHHHHHhhhchhcc-------ccCCCCCc----cchhhhhHHH
Q 006912 125 GIAGWLELLQALVTCLD---------SNDINHMEGAMDALSKICEDIPQVL-------DSDVPGLA----ECPINIFLPR 184 (626)
Q Consensus 125 ~~~~~~~ll~~l~~~l~---------~~~~~~r~~~l~~l~~l~~~~~~~~-------~~~~~~~~----~~~~~~il~~ 184 (626)
.|..--.+++.+.+.++ ..|++..+..- +++...+-++ .++..... ...+..++|.
T Consensus 264 kP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vs----kLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpy 339 (980)
T KOG2021|consen 264 KPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVS----KLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPY 339 (980)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHH----HHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHH
Confidence 33333345555533331 23444433322 2222222111 00000000 1234457788
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhccc------hHHHHhHHHHHHHHHHhc-------CCCC----------HHHHHHH
Q 006912 185 LLQFFQSPHTSLRKLSLGSVNQFIMLMP------SALFVSMDQYLQGLFLLS-------NDPS----------AEVRKLV 241 (626)
Q Consensus 185 l~~~l~~~~~~vr~~al~~l~~~~~~~~------~~~~~~~~~~l~~l~~~~-------~~~~----------~~~~~~~ 241 (626)
+++.+.+...+.-...+.-+..++..+. +.....+..++..++..+ ++.+ .++|+..
T Consensus 340 llq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkL 419 (980)
T KOG2021|consen 340 LLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKL 419 (980)
T ss_pred HHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHH
Confidence 8888888766666666666655554332 222223334444433321 1111 2577777
Q ss_pred HHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCc------chhHH--hhhhhhHHHHhhh
Q 006912 242 CAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP------HENLK--EFLPRLVPVLLSN 313 (626)
Q Consensus 242 ~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~------~~~~~--~~l~~li~~l~~~ 313 (626)
-..+..+....|+.+-..+..-+...+...+...+.....|+..+..+.+.-.. ...+. ..+..+++.++..
T Consensus 420 k~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~ts 499 (980)
T KOG2021|consen 420 KNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTS 499 (980)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHc
Confidence 777777888888777766666666555555667777888899888888876110 00011 1122222322211
Q ss_pred cccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh---hcCc--chHH
Q 006912 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN---VFGD--EILP 388 (626)
Q Consensus 314 l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~---~~~~--~~~~ 388 (626)
-... +.-+..+...+..+.+ .+.. ..+|
T Consensus 500 qv~~-----------------------------------------------h~h~lVqLlfmE~ivRY~kff~~esq~ip 532 (980)
T KOG2021|consen 500 QVLA-----------------------------------------------HDHELVQLLFMELIVRYNKFFSTESQKIP 532 (980)
T ss_pred cccc-----------------------------------------------CCchHHHHHHHHHHHHHHHHHhcchhhhH
Confidence 0000 0112223334444433 2221 2233
Q ss_pred hHHHHHH--HhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcC-----------------------
Q 006912 389 TLMPVIQ--AKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD----------------------- 443 (626)
Q Consensus 389 ~l~~~l~--~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~----------------------- 443 (626)
-++..+. ..+.+.+ .++|.-+-..+.++.....+.+.+++++++..+...+.
T Consensus 533 ~vL~aFld~rglhn~n---e~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIf 609 (980)
T KOG2021|consen 533 LVLNAFLDSRGLHNKN---ENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIF 609 (980)
T ss_pred HHHHHHccchhccccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceee
Confidence 3333321 1122233 66666666666666666555555666665555444441
Q ss_pred -------------------------------------------CCchHH----HHHHHHHHHHHHHHHhhhcC---CCch
Q 006912 444 -------------------------------------------DKFPLI----RSISCWTLSRFSKFIVQDIG---HQNG 473 (626)
Q Consensus 444 -------------------------------------------d~~~~v----r~~a~~~l~~l~~~~~~~~~---~~~~ 473 (626)
|....+ ...++.++|.+++.+..-.. ....
T Consensus 610 EtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~ 689 (980)
T KOG2021|consen 610 ETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGN 689 (980)
T ss_pred ecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccH
Confidence 111001 12234455555544332100 0011
Q ss_pred hhhHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 006912 474 REQFEKVLMGLLKRILD--TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (626)
Q Consensus 474 ~~~~~~ll~~l~~~l~d--~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~ 551 (626)
...+..+...++..+.- ....+|.+.-..+++++...|+++.||+|.+++.+++ +.+.+.+...+..|+-++...
T Consensus 690 ~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~---s~d~kEmvdfl~flsQLihkf 766 (980)
T KOG2021|consen 690 MVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLS---STDLKEMVDFLGFLSQLIHKF 766 (980)
T ss_pred HHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHH
Confidence 22344455555555442 3578899999999999999999999999999887753 444456666777777777777
Q ss_pred ccccCChhhhhhhhHHHHHHH
Q 006912 552 GFELNQPVYLDILMPPLIAKW 572 (626)
Q Consensus 552 ~~~~~~~~~~~~l~~~l~~~~ 572 (626)
..... +++.+++|+++.+.
T Consensus 767 k~~~~--~ilnqmlppll~rI 785 (980)
T KOG2021|consen 767 KTDCY--QILNQMLPPLLNRI 785 (980)
T ss_pred HHHHH--HHHHHHHHHHHHHH
Confidence 76665 68888888888764
No 103
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.24 E-value=0.00091 Score=64.40 Aligned_cols=211 Identities=19% Similarity=0.151 Sum_probs=143.3
Q ss_pred hccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCC
Q 006912 270 VNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (626)
Q Consensus 270 ~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 349 (626)
.+.+.....|..+++.+..+.......+.+......++..+.+.++....
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~------------------------------ 100 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS------------------------------ 100 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH------------------------------
Confidence 34555677899999998887766555566666677777777776653221
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHhhcC--c---chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc
Q 006912 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG--D---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (626)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~--~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~ 424 (626)
.-+..|..++..++-.+| . +++..+.|.+...+.+. ......|.+++.+|+.++-.+.
T Consensus 101 ----------------~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~-s~~~~~R~~~~~aLai~~fv~~ 163 (309)
T PF05004_consen 101 ----------------EEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDS-SASPKARAACLEALAICTFVGG 163 (309)
T ss_pred ----------------HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHHHHHhhc
Confidence 124568888888888876 2 67788899999988875 2337788888889888766443
Q ss_pred cc---hh---hhHHHHHHHHhhhcCC--------CchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhcc
Q 006912 425 KG---LY---PHLSEIVAFLIPLLDD--------KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD 490 (626)
Q Consensus 425 ~~---~~---~~l~~l~~~l~~~l~d--------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d 490 (626)
.. .. +.+..++......... +++.|..+|+.+-+-+...++.. .....+...++.+...|++
T Consensus 164 ~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~----~~~~~~~~~~~~l~~lL~s 239 (309)
T PF05004_consen 164 SDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDS----KLEDLLEEALPALSELLDS 239 (309)
T ss_pred CChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHhcC
Confidence 22 22 2333333322222111 23678888888877777666542 2456778889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcc---cc-cchHHHHHHHHHHHHhh
Q 006912 491 TNKRVQEAACSAFATLEEEAAE---EL-APRLEIILQHLMMAFGK 531 (626)
Q Consensus 491 ~~~~v~~~a~~al~~l~~~~~~---~~-~~~l~~i~~~l~~~l~~ 531 (626)
++..||.+|..+|+-+.+.... .+ .+..+.++..+..+...
T Consensus 240 ~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~d 284 (309)
T PF05004_consen 240 DDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATD 284 (309)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHh
Confidence 9999999999999999987642 22 45566666665555543
No 104
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.20 E-value=4.4e-06 Score=68.84 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=84.3
Q ss_pred HHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHH-HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcc
Q 006912 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE-KVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (626)
Q Consensus 434 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~ 512 (626)
+++.++..+.+.++.+|..++++++.++...+.. ...... .+++.+.+.+.++++.++..|+++|.+++...+.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDN-----IQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHH-----HHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 5778888888999999999999999999763321 233333 7889999999999999999999999999876543
Q ss_pred cccchH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 006912 513 ELAPRL-EIILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (626)
Q Consensus 513 ~~~~~l-~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~ 548 (626)
....+. ..+++.+...+...+...++.++.++..++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 222222 346777888888877778888888877764
No 105
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.19 E-value=0.015 Score=61.98 Aligned_cols=360 Identities=14% Similarity=0.103 Sum_probs=197.9
Q ss_pred HHHHHHHHHHhhcC---cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHh
Q 006912 112 TVGTIVSVVVQLGG---IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (626)
Q Consensus 112 ~~~~~l~~i~~~~~---~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 188 (626)
.+..++.+++.... .-.-.++++.|.+++.+++......++..|.++...-...- . ..-.++++.+.+.
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~--~------m~~~giV~kL~kL 339 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKD--E------MAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH--H------HHHcCCHHHHHHH
Confidence 44566777775421 11125678889999998888888778888877764332210 0 1136789999999
Q ss_pred cCCCChHHHHHHHHHHHHHHhccchHHHHhHH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCc--cchhhhHHHHH
Q 006912 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP--SFLEPHLRNLF 264 (626)
Q Consensus 189 l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~l~~l~ 264 (626)
+.+++..++..+++.|.++... ......+. .++|.+..++.+++ .+..++..|..+..... ..|. + .+.+
T Consensus 340 l~s~~~~l~~~aLrlL~NLSfd--~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~-~-TdcI 413 (708)
T PF05804_consen 340 LPSENEDLVNVALRLLFNLSFD--PELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFA-Y-TDCI 413 (708)
T ss_pred hcCCCHHHHHHHHHHHHHhCcC--HHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHh-h-cchH
Confidence 9999999999999999988533 22333333 46788888887653 45556666655553221 1121 1 1334
Q ss_pred HHHHhh-ccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCccc
Q 006912 265 EYMLQV-NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRF 343 (626)
Q Consensus 265 ~~~~~~-~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~ 343 (626)
+.+++. +...+..+...++..+.+++..+...+.+-. .+-++.++.....+.
T Consensus 414 p~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~--g~gL~~L~~ra~~~~------------------------- 466 (708)
T PF05804_consen 414 PQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCE--GNGLQSLMKRALKTR------------------------- 466 (708)
T ss_pred HHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh--cCcHHHHHHHHHhcc-------------------------
Confidence 444443 2334454555566666666665222111111 022233322111000
Q ss_pred ccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc--chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHc
Q 006912 344 HSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (626)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~ 421 (626)
.......+..++..-|. ..+...+.-+...+.++++ + +..+.|+|.++.
T Consensus 467 ------------------------D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~--e---e~~vE~LGiLaN 517 (708)
T PF05804_consen 467 ------------------------DPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDS--E---EFVVECLGILAN 517 (708)
T ss_pred ------------------------cHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCc--H---HHHHHHHHHHHh
Confidence 01133455555555443 1122222223334444431 3 455666666655
Q ss_pred cCcc--chhhhHH--HHHHHHhhhcCC--CchHHHHHHHHHHHHHHHHHhhhcCCCchhhhH--HHHHHHHHHHhccC--
Q 006912 422 GCIK--GLYPHLS--EIVAFLIPLLDD--KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDT-- 491 (626)
Q Consensus 422 ~~~~--~~~~~l~--~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~ll~~l~~~l~d~-- 491 (626)
-... .....+. .++|.+...+.. .++.+...++.++|.++..-. ....+ ..+++.++..+.+.
T Consensus 518 L~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~-------~A~lL~~sgli~~Li~LL~~kqe 590 (708)
T PF05804_consen 518 LTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPE-------CAPLLAKSGLIPTLIELLNAKQE 590 (708)
T ss_pred cccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHH-------HHHHHHhCChHHHHHHHHHhhCc
Confidence 4321 2223333 367777777653 345677788888898885321 12222 35566666666532
Q ss_pred CHHHHHHHHHHHHHHHHHh--cccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 006912 492 NKRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (626)
Q Consensus 492 ~~~v~~~a~~al~~l~~~~--~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~ 549 (626)
+.......+.++..++..- .+.+... ..+...++.++.+.+..+++.+=.||..+++
T Consensus 591 DdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 591 DDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred hHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4666777888888888542 2222221 3466677888888888877766666666654
No 106
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.19 E-value=0.00066 Score=71.88 Aligned_cols=303 Identities=17% Similarity=0.204 Sum_probs=169.2
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 006912 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (626)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (626)
.++++.|.+.+.+++...+..++.+|..+.....- ... -.-.+++|.+...+.+++ .+..++..|+++..
T Consensus 330 ~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~--R~~------mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~ 399 (708)
T PF05804_consen 330 SGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL--RSQ------MVSLGLIPKLVELLKDPN--FREVALKILYNLSM 399 (708)
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH--HHH------HHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhcc
Confidence 34578899999998888999999999888654332 111 123568899999998754 55668888888765
Q ss_pred ccch-HHHHhHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHhhCc--cchh--hhHHHHHHHHHhhccCCChHHHHHHH
Q 006912 210 LMPS-ALFVSMDQYLQGLFLL-SNDPSAEVRKLVCAAFNLLIEVRP--SFLE--PHLRNLFEYMLQVNKDTDDDVALEAC 283 (626)
Q Consensus 210 ~~~~-~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~l~~l~~~~~--~~~~--~~l~~l~~~~~~~~~~~~~~v~~~a~ 283 (626)
.... ..+.. .+.++.+.+. +..+++.+...++..+..++.... ..+. ..++.++... ++..++ ..+
T Consensus 400 dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra---~~~~D~----lLl 471 (708)
T PF05804_consen 400 DDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRA---LKTRDP----LLL 471 (708)
T ss_pred CHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHH---HhcccH----HHH
Confidence 4221 11111 1345555553 333455555555555544443211 1111 1122233222 233332 234
Q ss_pred hHHHHhhccC-CcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCcccc
Q 006912 284 EFWHSYFEAQ-LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIV 362 (626)
Q Consensus 284 ~~l~~l~~~~-~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (626)
.++.+++.++ .....+.+++..++..+ ...++
T Consensus 472 KlIRNiS~h~~~~k~~f~~~i~~L~~~v----~~~~~------------------------------------------- 504 (708)
T PF05804_consen 472 KLIRNISQHDGPLKELFVDFIGDLAKIV----SSGDS------------------------------------------- 504 (708)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHh----hcCCc-------------------------------------------
Confidence 6778888774 33333344444433332 21110
Q ss_pred ccccHHHHHHHHHHHHHhhc-Cc----chHH--hHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHH--H
Q 006912 363 NVWNLRKCSAAALDVLSNVF-GD----EILP--TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--E 433 (626)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~-~~----~~~~--~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~ 433 (626)
-.....|++.++... ++ .++. .++|++...+..... .....-.++..+|.++..- .....+. .
T Consensus 505 -----ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~-~dDl~LE~Vi~~gtla~d~--~~A~lL~~sg 576 (708)
T PF05804_consen 505 -----EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS-EDDLLLEVVILLGTLASDP--ECAPLLAKSG 576 (708)
T ss_pred -----HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC-ChHHHHHHHHHHHHHHCCH--HHHHHHHhCC
Confidence 123667777777654 22 2332 588889888865421 1345666678888877532 1222222 3
Q ss_pred HHHHHhhhcCC--CchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 006912 434 IVAFLIPLLDD--KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (626)
Q Consensus 434 l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (626)
+++.++..+.. .+....-..++++.++..+-..- ..--.-..+...++..++|.|+.||..|-.+|.-+++.
T Consensus 577 li~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr----~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 577 LIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR----EVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred hHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH----HHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 45555555542 23344444567777777653211 00111145778889999999999999999999888764
No 107
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.17 E-value=2.7e-05 Score=59.88 Aligned_cols=86 Identities=29% Similarity=0.432 Sum_probs=66.7
Q ss_pred HHHHHHhh-cCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcC
Q 006912 391 MPVIQAKL-SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG 469 (626)
Q Consensus 391 ~~~l~~~l-~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 469 (626)
+|.+.+.+ ++++ |.+|..++.+++.+. -+..++.+...++|+++.||..|++++|++..
T Consensus 1 i~~L~~~l~~~~~---~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPD---PQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSS---HHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCC---HHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 35566666 7788 999999999998332 23568888889999999999999999998853
Q ss_pred CCchhhhHHHHHHHHHHHhccC-CHHHHHHHHHHHH
Q 006912 470 HQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFA 504 (626)
Q Consensus 470 ~~~~~~~~~~ll~~l~~~l~d~-~~~v~~~a~~al~ 504 (626)
+..++.+.+.+.++ +..||..|..+|+
T Consensus 61 --------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 33567777777764 5778999999885
No 108
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=98.16 E-value=0.00092 Score=65.85 Aligned_cols=216 Identities=13% Similarity=0.164 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHhhC--ccch--hhhHHHHH
Q 006912 194 TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP-----SAEVRKLVCAAFNLLIEVR--PSFL--EPHLRNLF 264 (626)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~l~~l~~~~--~~~~--~~~l~~l~ 264 (626)
.+++..+++.+..+.+.-.+.+.+.++.++..+++++..- ...+...+++.|..+++.. ...+ .++++.|+
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence 3678888898888887667777778888888888865421 1234556777777666532 2233 45666666
Q ss_pred HHHHh-----------------------hccC-CChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchh
Q 006912 265 EYMLQ-----------------------VNKD-TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDD 320 (626)
Q Consensus 265 ~~~~~-----------------------~~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d 320 (626)
..++- .+.. +....|.+|++++..+++. ..+.+.+.+...+..++.....+
T Consensus 190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~--~~~~v~~i~~~~i~~~l~~y~~~--- 264 (370)
T PF08506_consen 190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKK--FEKQVTSILMQYIQQLLQQYASN--- 264 (370)
T ss_dssp HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHhhC---
Confidence 53221 0111 1134588999999999876 33444444444444433211100
Q ss_pred hhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc-----Cc-------chHH
Q 006912 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF-----GD-------EILP 388 (626)
Q Consensus 321 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~-----~~-------~~~~ 388 (626)
....|..+.+|...+..++... |. ++.+
T Consensus 265 ----------------------------------------~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 265 ----------------------------------------PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp ----------------------------------------TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred ----------------------------------------CcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 1224667778888888887655 11 1122
Q ss_pred hHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHH
Q 006912 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (626)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l 457 (626)
.+...+..-++...+..+-.|..|+..+..+-...+ .+.+..++|.++..|.+++..|+.-|+.++
T Consensus 305 Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~---~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP---KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 222222222331112227789999999988888765 357888999999999999999999887764
No 109
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.15 E-value=0.00031 Score=68.02 Aligned_cols=196 Identities=15% Similarity=0.160 Sum_probs=138.3
Q ss_pred hhHHHHHHH-HHHHHHccCccchhhhHHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHH
Q 006912 406 WKDREAAVL-ALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (626)
Q Consensus 406 ~~~r~aal~-~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 483 (626)
...|..|+. ..+.++++...--..++.+|+-.+++-+.| .++..|..|+..|+.+++.-+. ...++-+..+..
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~-----~l~DstE~ai~K 375 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA-----RLFDSTEIAICK 375 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH-----hhhchHHHHHHH
Confidence 566777776 445556654333367889999999999998 7889999999999999987553 467778888888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHH-hcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhh
Q 006912 484 LLKRILDTNKRVQEAACSAFATLEEE-AAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLD 562 (626)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~-~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~ 562 (626)
++..-.|.++.|-..|..+...++.. .+. ..+..+.+.++ ..++.....++..+..+++.+..+... +.++
T Consensus 376 ~Leaa~ds~~~v~~~Aeed~~~~las~~P~---~~I~~i~~~Il----t~D~~~~~~~iKm~Tkl~e~l~~EeL~-~ll~ 447 (516)
T KOG2956|consen 376 VLEAAKDSQDEVMRVAEEDCLTTLASHLPL---QCIVNISPLIL----TADEPRAVAVIKMLTKLFERLSAEELL-NLLP 447 (516)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHhhCch---hHHHHHhhHHh----cCcchHHHHHHHHHHHHHhhcCHHHHH-Hhhh
Confidence 88888888776666565554444433 221 12233333333 334444457888899999988765443 5888
Q ss_pred hhhHHHHHHHhcCCCCCCccchHHHHHHHHHHHhc-cccccchHHHHHHHHHHHH
Q 006912 563 ILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALG-AGFTQFAQPVFQRCINIIQ 616 (626)
Q Consensus 563 ~l~~~l~~~~~~~~~~~~~~~~~l~~~~~l~~~~g-~~f~~~~~~i~~~l~~~l~ 616 (626)
.++|.+++.++..+. ..+..++-|+-++...+| +.|.||+.++=..-+++++
T Consensus 448 diaP~~iqay~S~SS--~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Llq 500 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSS--TVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQ 500 (516)
T ss_pred hhhhHHHHHhcCchH--HhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHH
Confidence 999999998886432 223488899999999999 7999999987665555443
No 110
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.08 E-value=0.0018 Score=64.67 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=33.6
Q ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 006912 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (626)
Q Consensus 433 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (626)
..++.+...++++. +|..+++++|.+.. ...++.++..+.|+ .++..|-.++..|.
T Consensus 240 ~a~~~L~~ll~d~~--vr~~a~~AlG~lg~---------------p~av~~L~~~l~d~--~~aR~A~eA~~~It 295 (410)
T TIGR02270 240 DAQAWLRELLQAAA--TRREALRAVGLVGD---------------VEAAPWCLEAMREP--PWARLAGEAFSLIT 295 (410)
T ss_pred hHHHHHHHHhcChh--hHHHHHHHHHHcCC---------------cchHHHHHHHhcCc--HHHHHHHHHHHHhh
Confidence 35566666666644 77777777776553 12345555655542 26777777777764
No 111
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0023 Score=65.70 Aligned_cols=224 Identities=14% Similarity=0.182 Sum_probs=125.2
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhh
Q 006912 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (626)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 258 (626)
..++..++.+|++.++.|+-.|..++..+ +..|..+......++..+... ++-+++.-...-|..+...+...+
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~l-S~~p~alk~Aa~~~i~l~~ke---sdnnvklIvldrl~~l~~~~~~il-- 315 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTL-SNDPTALKAAASTYIDLLVKE---SDNNVKLIVLDRLSELKALHEKIL-- 315 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEc-cCCHHHHHHHHHHHHHHHHhc---cCcchhhhhHHHHHHHhhhhHHHH--
Confidence 34555566666666666666655555443 223444444433344433332 222333333334444433333333
Q ss_pred hHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCC
Q 006912 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (626)
Q Consensus 259 ~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~ 338 (626)
++++--++..+...+-++|..++++...+++... +..++..+-+.+..+.+
T Consensus 316 --~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN--------vediv~~Lkke~~kT~~------------------- 366 (948)
T KOG1058|consen 316 --QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN--------VEDIVQFLKKEVMKTHN------------------- 366 (948)
T ss_pred --HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc--------HHHHHHHHHHHHHhccc-------------------
Confidence 3444445567788899999999999888877522 12333333222211110
Q ss_pred CCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHH
Q 006912 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGA 418 (626)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~ 418 (626)
.+.+ ..-.+|..-..++...+..+++ +-..+++.+.+.+.+.+ ...-...+..+..
T Consensus 367 ---------------~e~d-----~~~~yRqlLiktih~cav~Fp~-~aatvV~~ll~fisD~N---~~aas~vl~FvrE 422 (948)
T KOG1058|consen 367 ---------------EESD-----DNGKYRQLLIKTIHACAVKFPE-VAATVVSLLLDFISDSN---EAAASDVLMFVRE 422 (948)
T ss_pred ---------------cccc-----cchHHHHHHHHHHHHHhhcChH-HHHHHHHHHHHHhccCC---HHHHHHHHHHHHH
Confidence 0001 1124788888888888888875 34467788888888887 6666666666677
Q ss_pred HHccCccchhhhHHHHHHHHhhhcC-CCchHHHHHHHHHHHHHHHHHh
Q 006912 419 IAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIV 465 (626)
Q Consensus 419 l~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 465 (626)
..+..+.- -..++..++..+. =....+-..|+|.+|.||+...
T Consensus 423 ~iek~p~L----r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 423 AIEKFPNL----RASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHhCchH----HHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 66655421 1223444444442 1445677889999999998765
No 112
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.0048 Score=60.48 Aligned_cols=116 Identities=15% Similarity=0.116 Sum_probs=91.7
Q ss_pred hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhCc-c
Q 006912 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRP-S 254 (626)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~-~ 254 (626)
.+..++..+.+-..|++..+|..|+.+|+...+..|.....+...++..++..+.| .+.+|..+++.+|..+.+... .
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 45667777777788899999999999999999999999988888888888876554 467898999999988876543 4
Q ss_pred chhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 255 FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 255 ~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
.+.+|+-++.--+.....+.++++|..++..++.++..
T Consensus 335 ~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKL 372 (533)
T ss_pred chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 46666666655555667788899999999888887665
No 113
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.04 E-value=0.019 Score=58.88 Aligned_cols=161 Identities=14% Similarity=0.142 Sum_probs=97.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHH
Q 006912 53 LAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLEL 132 (626)
Q Consensus 53 l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l 132 (626)
...||... ..++..+.+|++++. +.|.. -|+..+.-.+.++++..+++..||..+.+.|..+++.. +...+.+
T Consensus 25 y~~il~~~-kg~~k~K~Laaq~I~----kffk~-FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kv 97 (556)
T PF05918_consen 25 YKEILDGV-KGSPKEKRLAAQFIP----KFFKH-FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKV 97 (556)
T ss_dssp HHHHHHGG-GS-HHHHHHHHHHHH----HHHCC--GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHH
T ss_pred HHHHHHHc-cCCHHHHHHHHHHHH----HHHhh-ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHH
Confidence 34455443 346889999999986 44443 35566677788899999999999999999999999864 5666889
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccc
Q 006912 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (626)
Q Consensus 133 l~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (626)
...|.|+++++++..+...=.+|..+...-+... +..++..+... ..++..+|..+++.+..-+..++
T Consensus 98 aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~t-----------L~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 98 ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGT-----------LTGLFSQIESS-KSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHH-----------HHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHH-----------HHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCc
Confidence 9999999999888776666677777766554321 22222222211 24577899999998876665544
Q ss_pred hHH-H--HhHHH-HHHHHHHhcCC
Q 006912 213 SAL-F--VSMDQ-YLQGLFLLSND 232 (626)
Q Consensus 213 ~~~-~--~~~~~-~l~~l~~~~~~ 232 (626)
... . ..+.. ++..+-..+.|
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHh
Confidence 332 2 22333 34455556665
No 114
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.023 Score=57.85 Aligned_cols=145 Identities=14% Similarity=0.208 Sum_probs=109.5
Q ss_pred HHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHH
Q 006912 14 FNEICRLLEQQI-SPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (626)
Q Consensus 14 ~~~l~~~l~~~~-s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~ 92 (626)
+.++..+.+.++ |.|++ .|-+|++.|.++..+|+.+..+..++.. +..+.-...|+.+|.+.+.++- .++-++|-
T Consensus 4 LaqLe~lCk~LY~s~D~~-~R~~AE~~L~e~s~speclskCqlll~~--gs~pYs~mlAst~L~Klvs~~t-~lpl~qrl 79 (1082)
T KOG1410|consen 4 LAQLESLCKDLYESTDPT-ARHRAEKALAELSESPECLSKCQLLLER--GSYPYSQMLASTCLMKLVSRKT-PLPLEQRL 79 (1082)
T ss_pred HHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHccCHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHcCCC-CCcHHHHH
Confidence 567777777776 56888 9999999999999999999988888875 7888888899999998887764 58899999
Q ss_pred HHHHhHhhhhhCC----cHHHHHHHHHHHHHHHhhcCcC------chHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhc
Q 006912 93 YIKSELLPCLGAA----DRHIRSTVGTIVSVVVQLGGIA------GWLELLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (626)
Q Consensus 93 ~i~~~L~~~l~~~----~~~vr~~~~~~l~~i~~~~~~~------~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~ 162 (626)
.|++.+++.+... .+-|-.++++.++.+.+..|-+ .+.+.+..+.+.++.++.+.-.-|+.+|..++.++
T Consensus 80 dir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqem 159 (1082)
T KOG1410|consen 80 DIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEM 159 (1082)
T ss_pred HHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Confidence 9999999999752 4667788888999888875421 23555556666665555444445555555555443
No 115
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.00 E-value=0.00053 Score=73.39 Aligned_cols=189 Identities=15% Similarity=0.090 Sum_probs=143.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhCc-cchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhh
Q 006912 224 QGLFLLSNDPSAEVRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEF 302 (626)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 302 (626)
+.+-..+.++++.-|.++++.+...++... .....+...+..++-....|.+-.+...+..++..++.. ......++
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~--lr~~~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK--LRPLFRKY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh--cchhhHHH
Confidence 444445567788999999999999887666 333344455555555567888888999999999998886 44557788
Q ss_pred hhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc
Q 006912 303 LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF 382 (626)
Q Consensus 303 l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~ 382 (626)
...+.|.++..+..... .+|.++..+++.++...
T Consensus 334 ~~~v~p~lld~lkekk~----------------------------------------------~l~d~l~~~~d~~~ns~ 367 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKS----------------------------------------------ELRDALLKALDAILNST 367 (815)
T ss_pred HHhhcchHHHHhhhccH----------------------------------------------HHHHHHHHHHHHHHhcc
Confidence 88888888776653221 36788888888887744
Q ss_pred CcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccc--hhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHH
Q 006912 383 GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG--LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (626)
Q Consensus 383 ~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~--~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (626)
+ +..+.+.+...+.+.+ ++.|......+.......... ....+..++|.++...+|.+..||.+|..+++.+
T Consensus 368 ~---l~~~~~~I~e~lk~kn---p~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 368 P---LSKMSEAILEALKGKN---PQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred c---HHHHHHHHHHHhcCCC---hhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 4 4467788888899988 999999888888887766422 2467788999999999999999999999999999
Q ss_pred HHHHhh
Q 006912 461 SKFIVQ 466 (626)
Q Consensus 461 ~~~~~~ 466 (626)
...+++
T Consensus 442 ~k~~Ge 447 (815)
T KOG1820|consen 442 MKVHGE 447 (815)
T ss_pred HHHhhH
Confidence 887754
No 116
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.99 E-value=0.00039 Score=64.43 Aligned_cols=185 Identities=16% Similarity=0.102 Sum_probs=123.8
Q ss_pred CChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHH-----HhHhhhhhCCcHHHHHHHHHHHHHHH
Q 006912 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK-----SELLPCLGAADRHIRSTVGTIVSVVV 121 (626)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~-----~~L~~~l~~~~~~vr~~~~~~l~~i~ 121 (626)
++-...|+.+|.. +.+|.++..|...+.+.-. .+..++.++ ..+...+.++++.+|..+..++.+++
T Consensus 11 ~~~l~~Ll~lL~~--t~dp~i~e~al~al~n~aa------f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls 82 (254)
T PF04826_consen 11 AQELQKLLCLLES--TEDPFIQEKALIALGNSAA------FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLS 82 (254)
T ss_pred HHHHHHHHHHHhc--CCChHHHHHHHHHHHhhcc------ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcC
Confidence 4445667888875 8899999999888876422 223333343 45666778899999999999999887
Q ss_pred hhc-CcCchHHHHHHHHHHhccC--ChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHH
Q 006912 122 QLG-GIAGWLELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRK 198 (626)
Q Consensus 122 ~~~-~~~~~~~ll~~l~~~l~~~--~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~ 198 (626)
... ........++.+.+.+.+. +..++.+|+.+|..+.-..... ..+...+|.++..+..++..+|.
T Consensus 83 ~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~----------~~l~~~i~~ll~LL~~G~~~~k~ 152 (254)
T PF04826_consen 83 VNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH----------HMLANYIPDLLSLLSSGSEKTKV 152 (254)
T ss_pred CChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh----------hhHHhhHHHHHHHHHcCChHHHH
Confidence 553 2234566778887766553 5678889999998885332211 23456788889999999999999
Q ss_pred HHHHHHHHHHhccchHHHHhHH-HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHh
Q 006912 199 LSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDP-SAEVRKLVCAAFNLLIE 250 (626)
Q Consensus 199 ~al~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~-~~~~~~~~~~~l~~l~~ 250 (626)
.++++|..+.+. |.-....+. +.+..+..+++.. ..++...++..+..+.+
T Consensus 153 ~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 153 QVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 999999998765 222222211 2345566666543 45566666666655543
No 117
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.015 Score=53.90 Aligned_cols=299 Identities=16% Similarity=0.139 Sum_probs=165.8
Q ss_pred ChhHHhH---HHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHh--
Q 006912 144 DINHMEG---AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-- 218 (626)
Q Consensus 144 ~~~~r~~---~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~-- 218 (626)
+.+.|+. .+.||..+++..... ....+++|.+..++..++..|+..+++.++.+++.........
T Consensus 53 NenhrekttlcVscLERLfkakega----------hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseil 122 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGA----------HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEIL 122 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccch----------hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHH
Confidence 4456666 667777777654432 2347788889999999999999999999999998765332221
Q ss_pred ---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHH-------HHhhccCCChHHHHHHHhHHHH
Q 006912 219 ---MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEY-------MLQVNKDTDDDVALEACEFWHS 288 (626)
Q Consensus 219 ---~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~-------~~~~~~~~~~~v~~~a~~~l~~ 288 (626)
-..+++.+...+...+.++.+.+.+.+..+.-. +. .+..+++. +.......++-+|...++.+..
T Consensus 123 lvvNaeilklildcIggeddeVAkAAiesikrialf-pa----aleaiFeSellDdlhlrnlaakcndiaRvRVleLIie 197 (524)
T KOG4413|consen 123 LVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PA----ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIE 197 (524)
T ss_pred HHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HH----HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHH
Confidence 125778888888888999999999998877632 11 11112221 0111112233456666676666
Q ss_pred hhccCCcchhHHh-hhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccH
Q 006912 289 YFEAQLPHENLKE-FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (626)
Q Consensus 289 l~~~~~~~~~~~~-~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (626)
+.+. .+..... .-..++..+..-|+-+++. -+
T Consensus 198 ifSi--SpesaneckkSGLldlLeaElkGteDt---------------------------------------------LV 230 (524)
T KOG4413|consen 198 IFSI--SPESANECKKSGLLDLLEAELKGTEDT---------------------------------------------LV 230 (524)
T ss_pred HHhc--CHHHHhHhhhhhHHHHHHHHhcCCcce---------------------------------------------ee
Confidence 6543 1111110 1122333333333322211 12
Q ss_pred HHHHHHHHHHHHhhc-CcchHH--hHHHHHHHhhcC--CCCCChhHHHHHHHHHHHHHccC------ccchhhhHHHHHH
Q 006912 368 RKCSAAALDVLSNVF-GDEILP--TLMPVIQAKLSA--SGDEAWKDREAAVLALGAIAEGC------IKGLYPHLSEIVA 436 (626)
Q Consensus 368 r~~a~~~l~~l~~~~-~~~~~~--~l~~~l~~~l~~--~~~~~~~~r~aal~~l~~l~~~~------~~~~~~~l~~l~~ 436 (626)
+-........++..- |.++++ .++..+...+.. ++ +..+.-++..++.+.... .+.+.+-+...+.
T Consensus 231 ianciElvteLaeteHgreflaQeglIdlicnIIsGadsd---Pfekfralmgfgkffgkeaimdvseeaicealiiaid 307 (524)
T KOG4413|consen 231 IANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSD---PFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAID 307 (524)
T ss_pred hhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCC---cHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHH
Confidence 333333333333332 223332 355556655543 34 777777777777765432 1222233444455
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHh
Q 006912 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEEEA 510 (626)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~-~~v~~~a~~al~~l~~~~ 510 (626)
..+..+...+|....+|+.++|.+....... .-....-++-...++....|.+ ..-+..+..||..+....
T Consensus 308 gsfEmiEmnDpdaieaAiDalGilGSnteGa---dlllkTgppaaehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 308 GSFEMIEMNDPDAIEAAIDALGILGSNTEGA---DLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred hhHHhhhcCCchHHHHHHHHHHhccCCcchh---HHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 5666777788999999999999998654321 0111111223333444333433 344677888888887554
No 118
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0015 Score=63.89 Aligned_cols=144 Identities=17% Similarity=0.149 Sum_probs=118.2
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~ 485 (626)
|..|.....-+..+.....-.-.+.+.+++-.+.....|++..+|.-|+..|++.++..+.. ...+...++..++
T Consensus 231 ~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~k-----v~th~~~~ldaii 305 (533)
T KOG2032|consen 231 ENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDK-----VRTHKTTQLDAII 305 (533)
T ss_pred ccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHH-----HHHhHHHHHHHHH
Confidence 88887777766666554321123667778888888999999999999999999999886653 6778888999999
Q ss_pred HHhccC-CHHHHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc
Q 006912 486 KRILDT-NKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (626)
Q Consensus 486 ~~l~d~-~~~v~~~a~~al~~l~~~~-~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~ 554 (626)
..+-|+ +..|...+.++|..+.+.. ..++.+|+-++.-.+.++++..+++.+..++..++.+..-+|..
T Consensus 306 ~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 306 RGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCC
Confidence 888765 5899999999999999876 57889999999999999999989999988888888888777654
No 119
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0022 Score=66.83 Aligned_cols=146 Identities=18% Similarity=0.167 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCch
Q 006912 368 RKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP 447 (626)
Q Consensus 368 r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~ 447 (626)
.-.|.+.+..++..+++.+++.+...-.+.-.... ...|--.-.+++.++...++-...|...+....+....|++.
T Consensus 785 yLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~---~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~ 861 (982)
T KOG4653|consen 785 YLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQ---TDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDH 861 (982)
T ss_pred eHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCC---ccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchH
Confidence 34477777788888888777766554332222221 233333337777777777766678888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhcccccchHHHH
Q 006912 448 LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRLEII 521 (626)
Q Consensus 448 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~-d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i 521 (626)
..|..++..+|.+|....- ...+.+.+++..++.... |.++.||++|...+..+....|..+.|++...
T Consensus 862 ~~RaSS~a~lg~Lcq~~a~-----~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~ 931 (982)
T KOG4653|consen 862 EFRASSLANLGQLCQLLAF-----QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLL 931 (982)
T ss_pred HHHHhHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 9999999999999987653 234567777777776654 77899999999999999999898888855433
No 120
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.0012 Score=68.68 Aligned_cols=199 Identities=13% Similarity=0.125 Sum_probs=140.7
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccc
Q 006912 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (626)
Q Consensus 133 l~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (626)
++.-...+.++.+.+|..|+..+..+++.-..... .....++..+...+.|.++-|-..|++.+..+++.-|
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~--------~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~ 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATL--------IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhh--------hhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc
Confidence 45555556677778999999999999984311100 1136788889999999999999999998888888766
Q ss_pred hHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
+.+.+.+ .....+.-+...++.|..+-+++..++...++.+..|...++..++++..+++...|..++..++.+|..
T Consensus 801 e~il~dL---~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 801 EDILPDL---SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred hhhHHHH---HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence 6554333 2222222222335566666799999999999999999999999999999988888899999999999876
Q ss_pred CCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHH
Q 006912 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (626)
Q Consensus 293 ~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~ 372 (626)
....+...+..++..++..... ++..-+|++|.
T Consensus 878 --~a~~vsd~~~ev~~~Il~l~~~---------------------------------------------d~s~~vRRaAv 910 (982)
T KOG4653|consen 878 --LAFQVSDFFHEVLQLILSLETT---------------------------------------------DGSVLVRRAAV 910 (982)
T ss_pred --HhhhhhHHHHHHHHHHHHHHcc---------------------------------------------CCchhhHHHHH
Confidence 2223333444444443322111 01124799999
Q ss_pred HHHHHHHhhcCcchHHh
Q 006912 373 AALDVLSNVFGDEILPT 389 (626)
Q Consensus 373 ~~l~~l~~~~~~~~~~~ 389 (626)
..+..+-...|.+++|.
T Consensus 911 ~li~~lL~~tg~dlLpi 927 (982)
T KOG4653|consen 911 HLLAELLNGTGEDLLPI 927 (982)
T ss_pred HHHHHHHhccchhhHHH
Confidence 99999999998776663
No 121
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.94 E-value=6.2e-05 Score=57.84 Aligned_cols=86 Identities=19% Similarity=0.284 Sum_probs=66.1
Q ss_pred HHHHhhhc-CCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhccc
Q 006912 435 VAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE 513 (626)
Q Consensus 435 ~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~ 513 (626)
+|.++..+ +|+++.||..+++++|++.. +.+++.+...++|+++.||..|+.+|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD---------------PEAIPALIELLKDEDPMVRRAAARALGRIG------ 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH---------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC---------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------
Confidence 46677777 89999999999999985532 256788888889999999999999999872
Q ss_pred ccchHHHHHHHHHHHHhhhhHH-HHHHHHHHHH
Q 006912 514 LAPRLEIILQHLMMAFGKYQRR-NLRIVYDAIG 545 (626)
Q Consensus 514 ~~~~l~~i~~~l~~~l~~~~~~-~~~~~~~~l~ 545 (626)
-+..++.|...+.+.++. ++..+..+|+
T Consensus 60 ----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ----DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 255677777777776544 4667887775
No 122
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.89 E-value=0.0046 Score=61.31 Aligned_cols=111 Identities=24% Similarity=0.324 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCC
Q 006912 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK 445 (626)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~ 445 (626)
.+|..|..++..+.... ..+.+.+...+.+++ |.+|..++.+++.+.... ..+.+...+.+.
T Consensus 195 ~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~---~~vr~~~~~~l~~~~~~~----------~~~~l~~~l~~~ 256 (335)
T COG1413 195 DVRRAAASALGQLGSEN-----VEAADLLVKALSDES---LEVRKAALLALGEIGDEE----------AVDALAKALEDE 256 (335)
T ss_pred HHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCC---HHHHHHHHHHhcccCcch----------hHHHHHHHHhcc
Confidence 37888888877665443 245566777788887 999999888887765432 345566666777
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 006912 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (626)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (626)
++.++..+....+.+ ........+...+.+....++..+..++..+...
T Consensus 257 ~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 257 DVILALLAAAALGAL---------------DLAEAALPLLLLLIDEANAVRLEAALALGQIGQE 305 (335)
T ss_pred chHHHHHHHHHhccc---------------CchhhHHHHHHHhhcchhhHHHHHHHHHHhhccc
Confidence 777776665444411 1122234445556666777788888777776543
No 123
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.052 Score=57.34 Aligned_cols=384 Identities=14% Similarity=0.160 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCC-----hhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhH
Q 006912 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND-----INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (626)
Q Consensus 108 ~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~-----~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il 182 (626)
.-|+..+..+-..-...+.+-..-++..+-+.+.+++ +..-++.+.++..+.+..+... ...+
T Consensus 439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~------------~~~i 506 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE------------STWI 506 (982)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch------------hHHH
Confidence 4566666555544444344445666677777777655 4566777777777777776542 4557
Q ss_pred HHHHHhcCC-----CChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchh
Q 006912 183 PRLLQFFQS-----PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (626)
Q Consensus 183 ~~l~~~l~~-----~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (626)
|.+++...+ .++.....+...++.+..+..+... +++..++.+++.+..++ .-..+...+..+++.++..+.
T Consensus 507 ~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~-~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C~~~L~ 583 (982)
T KOG2022|consen 507 PRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPM-YLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETCPESLD 583 (982)
T ss_pred HHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCc-ccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhhhhhCc
Confidence 777766543 3677778888888888877543221 23344677777775433 335666679999999999999
Q ss_pred hhHHHHHHHHHhhccC--CChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccC-chhhhhhhhhccCCCCC
Q 006912 258 PHLRNLFEYMLQVNKD--TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA-DDDESLVEAEEDESLPD 334 (626)
Q Consensus 258 ~~l~~l~~~~~~~~~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~-~~d~~~~~~~~~e~~~~ 334 (626)
+|...++..+...+.. ..+..|...+..++-+.+.. ..+....++.+++..++..+... ..+++..
T Consensus 584 py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~-~pEe~~kyl~~lin~il~qle~~l~~~i~~~---------- 652 (982)
T KOG2022|consen 584 PYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRL-KPEEIPKYLMKLINPILSQLEINLAPGIDDQ---------- 652 (982)
T ss_pred hHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhc-cHHhHHHHHHHHHHHHHHHHHHhhcCCCCCH----------
Confidence 9999999887776433 23456777777777765542 24555566667766665433221 1110000
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccccccccHHHHH--HHHHHHHHhhc----------------------Cc-chHHh
Q 006912 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS--AAALDVLSNVF----------------------GD-EILPT 389 (626)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a--~~~l~~l~~~~----------------------~~-~~~~~ 389 (626)
+ +.++.+ ..+++.+...+ +. .+...
T Consensus 653 -e-----------------------------~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k 702 (982)
T KOG2022|consen 653 -E-----------------------------NHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQK 702 (982)
T ss_pred -H-----------------------------HHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHH
Confidence 0 000000 01111111111 00 23445
Q ss_pred HHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccch-hhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHH--HHHHhh
Q 006912 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF--SKFIVQ 466 (626)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~-~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l--~~~~~~ 466 (626)
++|++.+.+.-- .++..+-+++|..++.=.....+.+ .++++++.+.+.+....+.. .++.....+ +....+
T Consensus 703 ~i~~~~kv~s~~-~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a----~tl~l~~~~l~~~~~~~ 777 (982)
T KOG2022|consen 703 AIPVFEKVLSMW-LGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLA----VTLSLIAACLLAKSTVE 777 (982)
T ss_pred HHHHHHHHHHHH-hcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHH----HHHHHHHHHHHhhhccc
Confidence 666666555421 1114566777766655444444445 78888899888884332211 111111111 111111
Q ss_pred hcCCCchhhhHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHhcccccc---hHHHH-HHHHHHHHhhhhHHHHH
Q 006912 467 DIGHQNGREQFEKVLMGLLKRILD----TNKRVQEAACSAFATLEEEAAEELAP---RLEII-LQHLMMAFGKYQRRNLR 538 (626)
Q Consensus 467 ~~~~~~~~~~~~~ll~~l~~~l~d----~~~~v~~~a~~al~~l~~~~~~~~~~---~l~~i-~~~l~~~l~~~~~~~~~ 538 (626)
.+ .+-...-+...+...+..+.+ +++.+-..-...+..+.+..+.-+.+ ....+ ...-...++.+.....+
T Consensus 778 ~~-~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~ 856 (982)
T KOG2022|consen 778 QC-KPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIR 856 (982)
T ss_pred cc-cccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHH
Confidence 00 001122233344444444443 24666666777788887776554443 23333 33555666666666666
Q ss_pred HHHHHHHHHHHHhcc
Q 006912 539 IVYDAIGTLADAVGF 553 (626)
Q Consensus 539 ~~~~~l~~i~~~~~~ 553 (626)
++..-+..++...++
T Consensus 857 aa~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 857 AASQFLTALATYATS 871 (982)
T ss_pred HHHHHHHHHHhhccc
Confidence 666666666655554
No 124
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.88 E-value=0.0029 Score=63.83 Aligned_cols=305 Identities=15% Similarity=0.160 Sum_probs=173.3
Q ss_pred chhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHH----hcCC-CCHHHHHHHHHHHHHHHh
Q 006912 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL----LSND-PSAEVRKLVCAAFNLLIE 250 (626)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~----~~~~-~~~~~~~~~~~~l~~l~~ 250 (626)
.....++..++..+..+...-....++|+..++....+...+....+++.+.. ..++ .++..-.-.+++++.++.
T Consensus 22 p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir 101 (435)
T PF03378_consen 22 PFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIR 101 (435)
T ss_dssp CCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHH
Confidence 45678888888888665443345567777776666555555554444444444 3333 467788888888888876
Q ss_pred hCc----cchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhh
Q 006912 251 VRP----SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEA 326 (626)
Q Consensus 251 ~~~----~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~ 326 (626)
... +.+...-+.+++.+...++.+-.+..-.+++.+..+.+... ...+.+...++++.++.- ..|+.
T Consensus 102 ~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~-~~~~p~~y~~L~~~Ll~p--------~lWe~ 172 (435)
T PF03378_consen 102 FVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP-SSPLPDAYKQLFPPLLSP--------ALWER 172 (435)
T ss_dssp HS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS---S--TTTGGGHHHHTSG--------GGGGS
T ss_pred hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCcHHHHHHHHHHcCc--------chhcc
Confidence 533 33334455777777777666545567778888888877633 345566777777776521 12310
Q ss_pred hccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-----chHHhHHHHHHHhhcCC
Q 006912 327 EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-----EILPTLMPVIQAKLSAS 401 (626)
Q Consensus 327 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-----~~~~~l~~~l~~~l~~~ 401 (626)
. + ++ -+....|..+.+.-+. .-+..++..+++++.+.
T Consensus 173 ~------------------------g-------------ni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk 214 (435)
T PF03378_consen 173 R------------------------G-------------NI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASK 214 (435)
T ss_dssp T------------------------T-------------TH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-T
T ss_pred C------------------------C-------------Cc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCC
Confidence 0 0 12 2344455555444443 33567888889999886
Q ss_pred CCCChhHHHHHHHHHHHHHccCcc-chhhhHHHHHHHHhhhcCCC-chHHHHHHHHHHHHHHHHHhh-----hcCCCchh
Q 006912 402 GDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIPLLDDK-FPLIRSISCWTLSRFSKFIVQ-----DIGHQNGR 474 (626)
Q Consensus 402 ~~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~-----~~~~~~~~ 474 (626)
. .-.-+...+..+...++. .+.++++.++..++.+++.. .+..+...+..++.++-..+. .++ ....
T Consensus 215 ~-----~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id-~IQ~ 288 (435)
T PF03378_consen 215 A-----NDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTID-SIQP 288 (435)
T ss_dssp T-----CHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHH-TTST
T ss_pred C-----cchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHH-HhcC
Confidence 3 124467888999998864 57899999999999999743 344444444444444332211 000 0112
Q ss_pred hhHHHHHHHH-HHHhcc-CCHHHHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHhhhh
Q 006912 475 EQFEKVLMGL-LKRILD-TNKRVQEAACSAFATLEEEAAE---ELAPRLEIILQHLMMAFGKYQ 533 (626)
Q Consensus 475 ~~~~~ll~~l-~~~l~d-~~~~v~~~a~~al~~l~~~~~~---~~~~~l~~i~~~l~~~l~~~~ 533 (626)
..+..++..+ +..++. ..+.-|..++-++.+++..+.. ........+++.++.++..+.
T Consensus 289 glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~p~ 352 (435)
T PF03378_consen 289 GLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLERPP 352 (435)
T ss_dssp THHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcCCc
Confidence 2333444332 334443 2455678888888888755432 234566777788888887654
No 125
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.87 E-value=0.00024 Score=74.22 Aligned_cols=149 Identities=18% Similarity=0.223 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 006912 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (626)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (626)
.++.|.+.+.+.......|...+.+|..+....|.... -...+.++|.+++++.-+|..+|..++.++.-+..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vl-------lp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~ 938 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVL-------LPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT 938 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhh-------ccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH
Confidence 45678888888866677888999999999998887532 14579999999999999999999999999998887
Q ss_pred ccchHHHHhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHhh-CccchhhhHHHHHHHHHhhccCCChHHHHHHHhH
Q 006912 210 LMPSALFVSMDQYLQGLFLLSNDPS---AEVRKLVCAAFNLLIEV-RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (626)
Q Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~l~~l~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~ 285 (626)
..+.-...++..++|.++.+-.+.+ .-+|..|++||+.+.+. ....+.+|-++++..+...+.|+..-||..|.++
T Consensus 939 ~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 939 ESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 7777777888888999999877665 56999999999999994 4456778888999999999999999999999875
No 126
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.87 E-value=0.018 Score=58.97 Aligned_cols=158 Identities=13% Similarity=0.183 Sum_probs=98.3
Q ss_pred HhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccch
Q 006912 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECP 177 (626)
Q Consensus 98 L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~ 177 (626)
++.+.. .+...++.+++.|...++.. |..-.+-+..++.++.+.+..+|..|+..|-.+|+..++.
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~F-P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~------------ 93 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHF-PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEH------------ 93 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-------------
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHH------------
Confidence 333333 46788999999999999874 5666778999999999999999999999999998876543
Q ss_pred hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-hCccch
Q 006912 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE-VRPSFL 256 (626)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~ 256 (626)
+..+...|.++|+..++.....+=++|.++....|.... ..++..+... ...++.+|..++.+|..-+. ...+.+
T Consensus 94 v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL---~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~ 169 (556)
T PF05918_consen 94 VSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTL---TGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELL 169 (556)
T ss_dssp HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS
T ss_pred HhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHH---HHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHh
Confidence 467778899999988888888888888888876554322 1223333221 13467799999988865443 333444
Q ss_pred h--hhHH-HHHHHHHhhccC
Q 006912 257 E--PHLR-NLFEYMLQVNKD 273 (626)
Q Consensus 257 ~--~~l~-~l~~~~~~~~~~ 273 (626)
. .-++ -++..+.+.+.|
T Consensus 170 ~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 170 TPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp ---HHHHHHHHHHHHHHCTT
T ss_pred hchHHHHHHHHHHHHHHHHh
Confidence 3 2222 233334445555
No 127
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.025 Score=58.81 Aligned_cols=283 Identities=16% Similarity=0.170 Sum_probs=136.2
Q ss_pred HHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCC
Q 006912 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (626)
Q Consensus 94 i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~ 173 (626)
++..+=.++.+..+.|-.-+|+++..+....+.. ...-+..+.-+++++....|.+|++.|++++-..|....
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~-l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~------ 318 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE-LAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT------ 318 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh-cchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc------
Confidence 3444444455555555555555555444332211 112445555566666666777777777766665554321
Q ss_pred ccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCc
Q 006912 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (626)
Q Consensus 174 ~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 253 (626)
..-..+-.+.+|.+-.+...|...+ .....+. .+.-++..+..+..|-+.+.+.-+.+++..++.++|
T Consensus 319 ------~cN~elE~lItd~NrsIat~AITtL---LKTG~e~---sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp 386 (865)
T KOG1078|consen 319 ------VCNLDLESLITDSNRSIATLAITTL---LKTGTES---SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFP 386 (865)
T ss_pred ------ccchhHHhhhcccccchhHHHHHHH---HHhcchh---HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhcc
Confidence 1111233334443333333333222 2221111 222334445455554455555556666666666666
Q ss_pred cchhhhHHHHHHHHHhhcc-CCChHHHHHHHhHHHHhhcc-CCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCC
Q 006912 254 SFLEPHLRNLFEYMLQVNK-DTDDDVALEACEFWHSYFEA-QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDES 331 (626)
Q Consensus 254 ~~~~~~l~~l~~~~~~~~~-~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~ 331 (626)
..=.. +++++-..+. +..-+.+...++.+..+++. +...+ +.+..+...+ +|
T Consensus 387 ~k~~~----~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe---~~L~~LCefI--------ED----------- 440 (865)
T KOG1078|consen 387 RKHTV----MMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE---RGLEHLCEFI--------ED----------- 440 (865)
T ss_pred HHHHH----HHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh---HHHHHHHHHH--------Hh-----------
Confidence 43222 2223333322 23344566667777776653 21111 1122221111 00
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHH-hHHHHHHHhhcCCCCCChhHHH
Q 006912 332 LPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP-TLMPVIQAKLSASGDEAWKDRE 410 (626)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~r~ 410 (626)
- ..+..+...+..+++-.|....| ..+.++...+--.+ ..+|.
T Consensus 441 ----------------------c-----------e~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn---~ivRa 484 (865)
T KOG1078|consen 441 ----------------------C-----------EFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILEN---AIVRA 484 (865)
T ss_pred ----------------------c-----------cchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhh---hhhHH
Confidence 0 12344666666666655432222 23333433333344 77888
Q ss_pred HHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q 006912 411 AAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (626)
Q Consensus 411 aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (626)
+|+.++..++.++. ... +.+...+.+++.|.+..||.+|-..+..+-
T Consensus 485 aAv~alaKfg~~~~-~l~---~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 485 AAVSALAKFGAQDV-VLL---PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHHHhcCCC-Ccc---ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 88888888884332 122 223445556677888888888877766555
No 128
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.85 E-value=0.0088 Score=57.68 Aligned_cols=199 Identities=20% Similarity=0.153 Sum_probs=129.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhh--CccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHH
Q 006912 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEV--RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (626)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 300 (626)
+...+..+.+.+...|..++..+..+... .++++..+...++..+.+.++....+-+..|+..+.-++=.-.......
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 33444455667788999999999888765 3467777777888888888866544445566665555433211112334
Q ss_pred hhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh
Q 006912 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (626)
Q Consensus 301 ~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~ 380 (626)
..+..+.|.|.+.+.+... ....|..+..+|..++-
T Consensus 125 ei~~~~~~~L~~~l~d~s~--------------------------------------------~~~~R~~~~~aLai~~f 160 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSA--------------------------------------------SPKARAACLEALAICTF 160 (309)
T ss_pred HHHHHHHHHHHHHHhCCcc--------------------------------------------chHHHHHHHHHHHHHHH
Confidence 5566666666554442210 12367777888887766
Q ss_pred hcCc--chHHhHHHHHH-----HhhcCCC-------CCChhHHHHHHHHHHHHHccCcc-chhhhHHHHHHHHhhhcCCC
Q 006912 381 VFGD--EILPTLMPVIQ-----AKLSASG-------DEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIPLLDDK 445 (626)
Q Consensus 381 ~~~~--~~~~~l~~~l~-----~~l~~~~-------~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~l~~~l~~~l~d~ 445 (626)
..+. +-+..++..+. ...+... .++..+..+|+.+.+-+...++. .+...+...+|.+...|..+
T Consensus 161 v~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~ 240 (309)
T PF05004_consen 161 VGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSD 240 (309)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 5543 23332223333 2222111 12367899999999999988764 35567788899999999999
Q ss_pred chHHHHHHHHHHHHHHHHHh
Q 006912 446 FPLIRSISCWTLSRFSKFIV 465 (626)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~ 465 (626)
+..||.+|-.+|+-+.+...
T Consensus 241 d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 241 DVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988877654
No 129
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.85 E-value=0.017 Score=57.21 Aligned_cols=275 Identities=20% Similarity=0.198 Sum_probs=171.2
Q ss_pred HHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCC
Q 006912 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (626)
Q Consensus 94 i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~ 173 (626)
....+...+.+++..+|..++..++.+.. .+.++.+...+.+.++.+|..+..+|+.+-.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~------------- 103 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS-------EEAVPLLRELLSDEDPRVRDAAADALGELGD------------- 103 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch-------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------------
Confidence 44567778888899999999888665542 5678999999999999999999997765422
Q ss_pred ccchhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCC------------HHHHHH
Q 006912 174 AECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPS------------AEVRKL 240 (626)
Q Consensus 174 ~~~~~~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~------------~~~~~~ 240 (626)
...++.+...+. +.+..||..+..+|+.+-... -+..++..+++.. ..+|..
T Consensus 104 -----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 104 -----PEAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred -----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 455667777777 689999999999998875431 1333444444433 134555
Q ss_pred HHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchh
Q 006912 241 VCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDD 320 (626)
Q Consensus 241 ~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d 320 (626)
+...+..+-.. ..++.+...+.+.+..+|..+...++.+.... ..+.+.+...+.
T Consensus 169 a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~----- 223 (335)
T COG1413 169 AAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALS----- 223 (335)
T ss_pred HHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhc-----
Confidence 55554443322 23344555667777789999998888876641 112222222111
Q ss_pred hhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcC
Q 006912 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA 400 (626)
Q Consensus 321 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~ 400 (626)
...|.+|..+...++.+ | .....+.+...+.+
T Consensus 224 -----------------------------------------~~~~~vr~~~~~~l~~~----~---~~~~~~~l~~~l~~ 255 (335)
T COG1413 224 -----------------------------------------DESLEVRKAALLALGEI----G---DEEAVDALAKALED 255 (335)
T ss_pred -----------------------------------------CCCHHHHHHHHHHhccc----C---cchhHHHHHHHHhc
Confidence 11245676666655533 1 12344556666777
Q ss_pred CCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHH
Q 006912 401 SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKV 480 (626)
Q Consensus 401 ~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l 480 (626)
.+ |..+..+..+.+ .. ........+...+.|....+|..+...++++.....
T Consensus 256 ~~---~~~~~~~~~~~~----~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------- 307 (335)
T COG1413 256 ED---VILALLAAAALG----AL------DLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKA--------------- 307 (335)
T ss_pred cc---hHHHHHHHHHhc----cc------CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccch---------------
Confidence 77 777766665555 11 111224455666678889999999888888776432
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHH
Q 006912 481 LMGLLKRILDTNKRVQEAACSAFA 504 (626)
Q Consensus 481 l~~l~~~l~d~~~~v~~~a~~al~ 504 (626)
....+....+....++..+.....
T Consensus 308 ~~a~~~~~~~~~~~~~~~~~~~~~ 331 (335)
T COG1413 308 VAALLLALEDGDADVRKAALILLE 331 (335)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHH
Confidence 133444455556666666555543
No 130
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.018 Score=64.87 Aligned_cols=341 Identities=15% Similarity=0.108 Sum_probs=178.5
Q ss_pred HHHHHhHhh--hhhCCcHHHHHHHHHHHHHHHhhcCc------CchHHHHHHHHHHhc---cC-Ch--hHHhHHHHHHHH
Q 006912 92 QYIKSELLP--CLGAADRHIRSTVGTIVSVVVQLGGI------AGWLELLQALVTCLD---SN-DI--NHMEGAMDALSK 157 (626)
Q Consensus 92 ~~i~~~L~~--~l~~~~~~vr~~~~~~l~~i~~~~~~------~~~~~ll~~l~~~l~---~~-~~--~~r~~~l~~l~~ 157 (626)
..+...|+. .|.+.+..||...+.|++.|.+...| .+..+++..+.+.+. +. +| ..+..-+..+..
T Consensus 47 ~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~ 126 (1266)
T KOG1525|consen 47 LPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAK 126 (1266)
T ss_pred HHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHH
Confidence 334444444 45689999999999999999998632 244555665555443 22 22 222222333332
Q ss_pred HhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHH
Q 006912 158 ICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEV 237 (626)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 237 (626)
+. .+--....+- +..+.+++..++..+.++++.--..-...+..++.... ..-..++..++.-+-.+.++.
T Consensus 127 ~k-~~l~~~l~d~----~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d----~v~~e~L~~ll~~lv~~~~~~ 197 (1266)
T KOG1525|consen 127 VK-FCLLMLLEDC----QELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEED----TVQSELLDVLLENLVKPGRDT 197 (1266)
T ss_pred hH-HHheeeccch----HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHhccCCCCc
Confidence 22 1111111110 13345555556666666665433332233333322211 111133455554444444556
Q ss_pred HHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccC
Q 006912 238 RKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA 317 (626)
Q Consensus 238 ~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~ 317 (626)
...|...=..++..++..+.+.+..++.-.+..-...-...+....+.+..+-. .....+-.++|.+...+...
T Consensus 198 ~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~------~~p~ll~~vip~l~~eL~se 271 (1266)
T KOG1525|consen 198 IKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWR------IAPQLLLAVIPQLEFELLSE 271 (1266)
T ss_pred cHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHH------hhHHHHHHHHHHHHHHHhcc
Confidence 666666667777777776666555544432222111111223333344444432 23344556666665444321
Q ss_pred chhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---chHHhHHHHH
Q 006912 318 DDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVI 394 (626)
Q Consensus 318 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l 394 (626)
.+ .+|.-|...++.+....+. +..+.+...+
T Consensus 272 ~~----------------------------------------------~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~f 305 (1266)
T KOG1525|consen 272 QE----------------------------------------------EVRLKAVKLVGRMFSDKDSQLSETYDDLWSAF 305 (1266)
T ss_pred hH----------------------------------------------HHHHHHHHHHHHHHhcchhhhcccchHHHHHH
Confidence 11 2688888888877665543 3345666667
Q ss_pred HHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHH--HHHHHHhhhcCCCc
Q 006912 395 QAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLS--RFSKFIVQDIGHQN 472 (626)
Q Consensus 395 ~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~--~l~~~~~~~~~~~~ 472 (626)
...+.+.+ ..+|.+++.....+....+... .- ..+...+.. .|.++.+|.....++. ...+.
T Consensus 306 l~r~~D~~---~~vR~~~v~~~~~~l~~~~~~~-~~-~~~~~~l~~--~~~D~~~rir~~v~i~~~~v~~~--------- 369 (1266)
T KOG1525|consen 306 LGRFNDIS---VEVRMECVESIKQCLLNNPSIA-KA-STILLALRE--RDLDEDVRVRTQVVIVACDVMKF--------- 369 (1266)
T ss_pred HHHhccCC---hhhhhhHHHHhHHHHhcCchhh-hH-HHHHHHHHh--hcCChhhhheeeEEEEEeehhHh---------
Confidence 77777777 8999999988777655432111 11 112222322 3444444444322222 22221
Q ss_pred hhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 006912 473 GREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (626)
Q Consensus 473 ~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (626)
...+...++..+...+.|..+.||..|+..|..+-++
T Consensus 370 ~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 370 KLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 2334444777778888899999999999999999875
No 131
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.021 Score=59.87 Aligned_cols=181 Identities=15% Similarity=0.068 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHh-hccCChhHHHHHHHhHhhhhhC-CcHHHHHHHHHHHHHHHhhcCcC--ch--HHHHHH
Q 006912 62 GKSVEIRQAAGLLLKNNLRTA-YKSMSPSNQQYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLGGIA--GW--LELLQA 135 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~~~-~~~l~~~~~~~i~~~L~~~l~~-~~~~vr~~~~~~l~~i~~~~~~~--~~--~~ll~~ 135 (626)
+.++.....|++-|...+..- =..++---.+.+...|+.+|++ .+..+-..+|+++..++...++. .. ...+|.
T Consensus 179 ~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPv 258 (1051)
T KOG0168|consen 179 ESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPV 258 (1051)
T ss_pred cCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHH
Confidence 336666666766666555321 1123333346777888888875 47889999999999999887532 11 224566
Q ss_pred HHHHhcc-CChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchH
Q 006912 136 LVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA 214 (626)
Q Consensus 136 l~~~l~~-~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~ 214 (626)
+.+-+.- .=-++-+.++.+|..+.+..+..... ..-+...+.+|.==+..+++.|+-...+++..++.+
T Consensus 259 l~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~----------AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd 328 (1051)
T KOG0168|consen 259 LLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQ----------AGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD 328 (1051)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHh----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 6555543 23457778999999998887765321 111222333332223467778887788888777665
Q ss_pred HHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhC
Q 006912 215 LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (626)
Q Consensus 215 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 252 (626)
-+..+-+.+|.|.++++..+......++-|+..+++..
T Consensus 329 ~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 329 EFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred cchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 55555677888888888778888899999999998753
No 132
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=0.13 Score=58.26 Aligned_cols=365 Identities=13% Similarity=0.055 Sum_probs=181.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcc--CChhHHHHHHHhHhhhh---hCC-cHHHHH--HHHHHHHHHH----hhc--CcC
Q 006912 62 GKSVEIRQAAGLLLKNNLRTAYKS--MSPSNQQYIKSELLPCL---GAA-DRHIRS--TVGTIVSVVV----QLG--GIA 127 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~~~~~~--l~~~~~~~i~~~L~~~l---~~~-~~~vr~--~~~~~l~~i~----~~~--~~~ 127 (626)
+.+-.+|.+.+-++-..++-+=+. ...++...|-..++..+ ++. ++...+ .+..-++.+- ..+ ..+
T Consensus 61 h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e 140 (1266)
T KOG1525|consen 61 HKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQE 140 (1266)
T ss_pred CCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHH
Confidence 778899999999988877654333 23445566666666544 332 333221 1222221111 111 223
Q ss_pred chHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHH
Q 006912 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (626)
Q Consensus 128 ~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~ 207 (626)
..++++..+......+-+.-...-+.++..++..... .-..++..++.-|-.+.......|...-..+
T Consensus 141 ~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~------------v~~e~L~~ll~~lv~~~~~~~~~a~~la~~l 208 (1266)
T KOG1525|consen 141 LVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDT------------VQSELLDVLLENLVKPGRDTIKEADKLASDL 208 (1266)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc------------chHHHHHHHHHHhccCCCCccHHHHHHHHHH
Confidence 4455555566655554443333344444444443332 1245555555555444344444444444444
Q ss_pred HhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHH
Q 006912 208 IMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (626)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~ 287 (626)
+..++..+.+.+.+++..-+..-...-...+....+.+..+....|..+. .++|.+..-+..++.++|..|...++
T Consensus 209 i~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~----~vip~l~~eL~se~~~~Rl~a~~lvg 284 (1266)
T KOG1525|consen 209 IERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLL----AVIPQLEFELLSEQEEVRLKAVKLVG 284 (1266)
T ss_pred HHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 44434334444444443333222212233455566667777776666554 46666666677778889999999988
Q ss_pred HhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccH
Q 006912 288 SYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (626)
Q Consensus 288 ~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (626)
.+...+.. .+..-.+.+....+.++.+. ...+
T Consensus 285 ~~~~~~~~--~l~~~~~~~~~~fl~r~~D~----------------------------------------------~~~v 316 (1266)
T KOG1525|consen 285 RMFSDKDS--QLSETYDDLWSAFLGRFNDI----------------------------------------------SVEV 316 (1266)
T ss_pred HHHhcchh--hhcccchHHHHHHHHHhccC----------------------------------------------Chhh
Confidence 87665211 11122222222222222211 1136
Q ss_pred HHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCch
Q 006912 368 RKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP 447 (626)
Q Consensus 368 r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~ 447 (626)
|..+.++.......-+. ........+.-...+.| ..+|......+....- .+.-..+.+.++..+..++.|..+
T Consensus 317 R~~~v~~~~~~l~~~~~-~~~~~~~~~~l~~~~~D---~~~rir~~v~i~~~~v--~~~~l~~~~~ll~~~~eR~rDKk~ 390 (1266)
T KOG1525|consen 317 RMECVESIKQCLLNNPS-IAKASTILLALRERDLD---EDVRVRTQVVIVACDV--MKFKLVYIPLLLKLVAERLRDKKI 390 (1266)
T ss_pred hhhHHHHhHHHHhcCch-hhhHHHHHHHHHhhcCC---hhhhheeeEEEEEeeh--hHhhhhhhHHHHHHHHHHHhhhhH
Confidence 77777666655444332 11111111221222334 4455443332221111 111124444588889999999999
Q ss_pred HHHHHHHHHHHHHHHH-Hhh-hcCCCchhhhHHHHHHHHHHHhccCCHHHH
Q 006912 448 LIRSISCWTLSRFSKF-IVQ-DIGHQNGREQFEKVLMGLLKRILDTNKRVQ 496 (626)
Q Consensus 448 ~vr~~a~~~l~~l~~~-~~~-~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~ 496 (626)
.||..|+..+.++... +.. .-|.....+.+..+-..++..+...+...|
T Consensus 391 ~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 391 KVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH
Confidence 9999999999998884 211 112222233344444455555544443334
No 133
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.76 E-value=0.018 Score=53.97 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=94.5
Q ss_pred HHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchH
Q 006912 135 ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA 214 (626)
Q Consensus 135 ~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~ 214 (626)
.|...++++++.+|..|+.+|..+++..+...-+ ...+.-++..+..-+.| ...-..+++++..++.. +..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~------~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~-~~~ 73 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLS------RQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKM-KNF 73 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhcc------HHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhC-cCC
Confidence 4567788999999999999999999999864322 13345555555555543 33344447777777632 222
Q ss_pred HHHhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccC-CChHHHHHHHhHHHHhhc
Q 006912 215 LFVSMDQYLQGLFLLSND--PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYFE 291 (626)
Q Consensus 215 ~~~~~~~~l~~l~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~v~~~a~~~l~~l~~ 291 (626)
..+....+++.+++.... --...|..+++.+..+++++...+...=..++..+++.+.. .|+.--..+++.+..+..
T Consensus 74 ~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 74 SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 222344556666654332 23468999999999999887766654445666666666554 456555666666665554
Q ss_pred c
Q 006912 292 A 292 (626)
Q Consensus 292 ~ 292 (626)
.
T Consensus 154 ~ 154 (262)
T PF14500_consen 154 E 154 (262)
T ss_pred h
Confidence 3
No 134
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.73 E-value=0.0012 Score=61.31 Aligned_cols=189 Identities=16% Similarity=0.159 Sum_probs=121.5
Q ss_pred HHHHHhhcC-CCCCChhHHHHHHHHHHHHHccCccchhhhHH--HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhc
Q 006912 392 PVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI 468 (626)
Q Consensus 392 ~~l~~~l~~-~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 468 (626)
+.+..+++. .+ +..++.++.+++..+.... -...+. ..++.+...+.++++.+|..|++++..++......
T Consensus 15 ~~Ll~lL~~t~d---p~i~e~al~al~n~aaf~~--nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~- 88 (254)
T PF04826_consen 15 QKLLCLLESTED---PFIQEKALIALGNSAAFPF--NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ- 88 (254)
T ss_pred HHHHHHHhcCCC---hHHHHHHHHHHHhhccChh--HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH-
Confidence 445556654 45 9999999999999866432 122222 25788899999999999999999999988654321
Q ss_pred CCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 006912 469 GHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (626)
Q Consensus 469 ~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~ 548 (626)
...+.|+..++..+... .-+..+|.++.++|.++.- .+.....+...++.++.++...+...+..++.+|..+.
T Consensus 89 --~~Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv--~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 89 --EQIKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTV--TNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred --HHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCC--CcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 02344444444444331 2267889999999999842 23223334455666677888877788888888988886
Q ss_pred HHhc--cccCChhhhhhhhHHHHHHHhcCCCCCCc-cchHHHHHHHHHHHhcc
Q 006912 549 DAVG--FELNQPVYLDILMPPLIAKWQQLPNSDKD-LFPLLECFTSIAQALGA 598 (626)
Q Consensus 549 ~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~l~~~~~l~~~~g~ 598 (626)
..-. .++ .-.+.++.++..+... .+++ +..++..+..+...++.
T Consensus 163 ~np~~~~~L----l~~q~~~~~~~Lf~~~--~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 163 ENPDMTREL----LSAQVLSSFLSLFNSS--ESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred cCHHHHHHH----HhccchhHHHHHHccC--CccHHHHHHHHHHHHHHHhhCc
Confidence 5421 222 2224455566666542 2334 45777777777776665
No 135
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.68 E-value=5.5e-05 Score=44.41 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.9
Q ss_pred HHHHHhhhcCCCchHHHHHHHHHHHHHHHH
Q 006912 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (626)
Q Consensus 434 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (626)
++|.+++.++|+++.||.+|++++|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
No 136
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.1 Score=54.52 Aligned_cols=199 Identities=15% Similarity=0.126 Sum_probs=122.3
Q ss_pred HHhHhhhhh-CCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhcc--CChhHHhHHHHHHHHHhhhch--hccccC
Q 006912 95 KSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS--NDINHMEGAMDALSKICEDIP--QVLDSD 169 (626)
Q Consensus 95 ~~~L~~~l~-~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~--~~~~~r~~~l~~l~~l~~~~~--~~~~~~ 169 (626)
.+.|.+... .+-..=|+.|+..+..+++.+-...-..=++.+++.+.. .|+.....++..+..++..-. ...+..
T Consensus 24 I~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds 103 (970)
T KOG0946|consen 24 IEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDS 103 (970)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccc
Confidence 344444443 233444888888888888764211111223445555543 367777788888877765432 111110
Q ss_pred C--C--CC-c-c--chhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhH---HHHHHHHHHhcCCCCHHHH
Q 006912 170 V--P--GL-A-E--CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM---DQYLQGLFLLSNDPSAEVR 238 (626)
Q Consensus 170 ~--~--~~-~-~--~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~---~~~l~~l~~~~~~~~~~~~ 238 (626)
. . |. + + -...+.+..++.++..-+-.||..+++.+..++...|..+.+.+ |.-+..+..++.|..+-+|
T Consensus 104 ~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IR 183 (970)
T KOG0946|consen 104 TQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIR 183 (970)
T ss_pred hhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhc
Confidence 0 0 00 0 0 01244566777778888899999999999999999888776543 2335666777788888899
Q ss_pred HHHHHHHHHHHhhCccchhh-hHHHHHHHHHhhccC----CChHHHHHHHhHHHHhhccC
Q 006912 239 KLVCAAFNLLIEVRPSFLEP-HLRNLFEYMLQVNKD----TDDDVALEACEFWHSYFEAQ 293 (626)
Q Consensus 239 ~~~~~~l~~l~~~~~~~~~~-~l~~l~~~~~~~~~~----~~~~v~~~a~~~l~~l~~~~ 293 (626)
..++-.|..++..++..-+- ..+.++.-++..+.. ...-|...|+.++..+.+..
T Consensus 184 Ne~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 184 NEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 99999999999887753110 123344444444332 22347788888888888763
No 137
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.67 E-value=0.092 Score=53.76 Aligned_cols=138 Identities=14% Similarity=0.049 Sum_probs=92.7
Q ss_pred cHHHHHHHHHHHHHhhcC----cchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHH-HHHHHhh
Q 006912 366 NLRKCSAAALDVLSNVFG----DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE-IVAFLIP 440 (626)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~-l~~~l~~ 440 (626)
.++.+|..|+..+++... +---..+...+.+.+.+|+ ..+..+++.++..+.-..+.-...++.. .+..+..
T Consensus 392 ~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~---~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 392 DFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPE---IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcc---hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 478888888877766541 1111233444455557888 8888888888888776654332334432 5777888
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHH-HHHHHHhccCCHHHHHHHHHHHHHHHHHh
Q 006912 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL-MGLLKRILDTNKRVQEAACSAFATLEEEA 510 (626)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll-~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (626)
.+.+.++.+|..+.|++..+.-...+. ........+- ..+....+|+++.|++.+...+.++.-.+
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~----~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEE----EKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHH----HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 889999999999999998887544432 1223333333 34445567899999999999999987554
No 138
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.66 E-value=0.078 Score=54.23 Aligned_cols=137 Identities=12% Similarity=0.058 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHHHHccC---ccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGC---IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~---~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~ 482 (626)
...+.||+.++..++... ... ..-.++..-+++.+.|+...|..++..++.++.-.+.+. ...-.-...+.
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~----kskfl~~ngId 464 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNL----KSKFLRNNGID 464 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccH----HHHHHHcCcHH
Confidence 667888888887776543 111 111234555667778999999999999988888766543 11222345677
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 006912 483 GLLKRILDTNKRVQEAACSAFATLEEEAAE--ELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (626)
Q Consensus 483 ~l~~~l~d~~~~v~~~a~~al~~l~~~~~~--~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~ 548 (626)
.+.+...+..+.+|..+.++|..+.-.+.+ .+.++-......+..+.+++++.+++.++..+-++.
T Consensus 465 ~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 465 ILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 788888889999999999999999877754 345666666667777888888888887777776664
No 139
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.65 E-value=0.13 Score=60.82 Aligned_cols=333 Identities=14% Similarity=0.108 Sum_probs=175.4
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHHh-ccch-HHH--HhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhCccc
Q 006912 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIM-LMPS-ALF--VSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSF 255 (626)
Q Consensus 181 il~~l~~~l~~~~~~vr~~al~~l~~~~~-~~~~-~~~--~~~~~~l~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~ 255 (626)
+-+.+...-.+++..++..|+..|..+.. +++. ++. ..-..+++.+...+ ...+.++|..+++|+..++....+.
T Consensus 1138 l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~n 1217 (1780)
T PLN03076 1138 LSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNN 1217 (1780)
T ss_pred HHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh
Confidence 33344443344567788888888877663 3332 111 11124455555433 3456789999999999999998888
Q ss_pred hhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhH----HhhhhhhHHHHhhhcccCchhhhhhhhhccCC
Q 006912 256 LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL----KEFLPRLVPVLLSNMIYADDDESLVEAEEDES 331 (626)
Q Consensus 256 ~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~----~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~ 331 (626)
++.-.+.++..+.....+.++.+...|++.+..+++.. ...+ ...+..++..+........
T Consensus 1218 IkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~--f~~l~~~~~~~F~DlV~cL~~Fa~q~~------------- 1282 (1780)
T PLN03076 1218 VKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY--FPYITETETTTFTDCVNCLIAFTNSRF------------- 1282 (1780)
T ss_pred hhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh--hhhccccchhHHHHHHHHHHHHHhCcC-------------
Confidence 88888899988887777888888888888877666531 0000 0122222222211110000
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCC----hh
Q 006912 332 LPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEA----WK 407 (626)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~----~~ 407 (626)
+ -+.+..+++.+..... .+...- +...-.+.+... ..
T Consensus 1283 ---------------------~--------------~nISL~AI~lL~~~~~-~La~~~---~~~~~~~~~~~~~~~~s~ 1323 (1780)
T PLN03076 1283 ---------------------N--------------KDISLNAIAFLRFCAT-KLAEGD---LGSSSRNKDKEAPPSSPQ 1323 (1780)
T ss_pred ---------------------c--------------ccccHHHHHHHHHHHH-HHHhcc---cccccccccccccccccc
Confidence 0 0112333333321111 110000 000000000000 00
Q ss_pred HHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhh----HHHHHHH
Q 006912 408 DREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ----FEKVLMG 483 (626)
Q Consensus 408 ~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~----~~~ll~~ 483 (626)
...........+.. .+....+---++..+.....|+.+.||..|+.++=++....+.. ....+ +..++-.
T Consensus 1324 ~~~~~~~~~~~~~~--~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~----Fs~~~W~~if~~VLFP 1397 (1780)
T PLN03076 1324 SGKDGKQESGEFTD--KDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL----FSLPLWERVFESVLFP 1397 (1780)
T ss_pred cccccccccccccc--chhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc----CCHHHHHHHHHHHHHH
Confidence 00000000000000 00000111113334444456899999999999886666543322 22233 3333334
Q ss_pred HHHHhccC-----------------------CHHHHHHHHHHHHHHHHHh---cccccchHHHHHHHHHHHHhhhhHHHH
Q 006912 484 LLKRILDT-----------------------NKRVQEAACSAFATLEEEA---AEELAPRLEIILQHLMMAFGKYQRRNL 537 (626)
Q Consensus 484 l~~~l~d~-----------------------~~~v~~~a~~al~~l~~~~---~~~~~~~l~~i~~~l~~~l~~~~~~~~ 537 (626)
++..+... +.-+...+..||..+++-+ -+.+.+.++.++..|..++...++..-
T Consensus 1398 IFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la 1477 (1780)
T PLN03076 1398 IFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLA 1477 (1780)
T ss_pred HHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 44333210 1113455555555555443 355667888888888888887777777
Q ss_pred HHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhc
Q 006912 538 RIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQ 574 (626)
Q Consensus 538 ~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ 574 (626)
+....|+..++...|..|. +..+..++..+.+.+..
T Consensus 1478 ~ig~~~l~~li~~ng~~F~-~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1478 GIGIAAFVRLMSNAGHLFS-DEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHHH
Confidence 7899999999999998885 45888888887777664
No 140
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.64 E-value=0.0044 Score=62.54 Aligned_cols=213 Identities=11% Similarity=0.076 Sum_probs=126.9
Q ss_pred ChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHH
Q 006912 405 AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (626)
Q Consensus 405 ~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 483 (626)
|.....+..+.+..+.+.+.......+..+...+....++ ++|.--+..+.++|.+.++..+. ++.....+-..++|.
T Consensus 43 NeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~-~~~~v~~~E~~L~P~ 121 (435)
T PF03378_consen 43 NEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA-DPEAVSQFEEALFPP 121 (435)
T ss_dssp -HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG-GHH---HHHHHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC-ChhHHHHHHHHHHHH
Confidence 3666677666666665555433334444444444444444 57888899999999998875532 111233567778888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhh
Q 006912 484 LLKRILDTNKRVQEAACSAFATLEEEAA-EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLD 562 (626)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~~~-~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~ 562 (626)
+...++.........+..-|+.+++..+ ..+.+.+..+++.|+...-=....+.-.+.+.|.+++...+..+...+.+.
T Consensus 122 f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~ 201 (435)
T PF03378_consen 122 FQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLE 201 (435)
T ss_dssp HHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHH
Confidence 8888887666777888999999998876 556555555655554221111122345777888888888776654333555
Q ss_pred hhhHHHHHHHhcCCCCCCccchHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHhh
Q 006912 563 ILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAK 622 (626)
Q Consensus 563 ~l~~~l~~~~~~~~~~~~~~~~~l~~~~~l~~~~g~-~f~~~~~~i~~~l~~~l~~~~~~~ 622 (626)
.++..+-+.+. ...+| ..+++.+..+...++. ...||++.|+..+++.|++..+.|
T Consensus 202 ~iLgvFQkLi~-sk~~D---~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~k 258 (435)
T PF03378_consen 202 PILGVFQKLIA-SKAND---HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEK 258 (435)
T ss_dssp HHHHHHHHHHT--TTCH---HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HH
T ss_pred HHHHHHHHHHC-CCCcc---hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHH
Confidence 55543322222 22223 2677778888888876 679999999999999999875544
No 141
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.63 E-value=0.0033 Score=54.46 Aligned_cols=135 Identities=19% Similarity=0.131 Sum_probs=108.1
Q ss_pred hhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCC-HHHHHHHHHHHHHH
Q 006912 428 YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN-KRVQEAACSAFATL 506 (626)
Q Consensus 428 ~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~-~~v~~~a~~al~~l 506 (626)
...+..++..+...++++++.-|..++..++..++..+.. ....+...-+..+++.++.++ +.+...++.++..+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e----~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE----ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3456778888999999999999999999999999887433 345667888888888888654 67899999999999
Q ss_pred HHHhc-------ccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHH
Q 006912 507 EEEAA-------EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIA 570 (626)
Q Consensus 507 ~~~~~-------~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~ 570 (626)
+.... +...|.++.+++.+++++++ ......+++++..++...+.-|. ||..++-..+..
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~r--p~~~ki~~~l~~ 162 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFR--PFANKIESALLS 162 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcccc--chHHHHHHHHHH
Confidence 97752 34579999999999988876 45666889999999998888775 588877655544
No 142
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.12 Score=54.00 Aligned_cols=216 Identities=12% Similarity=0.092 Sum_probs=129.7
Q ss_pred CHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhh-----hCCcHHHHHHHHH-HHHHHHhh----cCcCch--HH
Q 006912 64 SVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCL-----GAADRHIRSTVGT-IVSVVVQL----GGIAGW--LE 131 (626)
Q Consensus 64 ~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l-----~~~~~~vr~~~~~-~l~~i~~~----~~~~~~--~~ 131 (626)
.-.+|=.|=.+++.....+..-+.|.....+.+. .+.. .+-+.-+++-+.. +++.-+.. ..-+.| ..
T Consensus 410 ey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a-~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~ 488 (978)
T KOG1993|consen 410 EYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSA-QELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEA 488 (978)
T ss_pred eeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHH-HhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHh
Confidence 3456777777776665554444555444444322 1211 1123344443332 22222211 122455 44
Q ss_pred HHHHHHHHhccCCh-hHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCC-ChHHHHHHHHHHHHHHh
Q 006912 132 LLQALVTCLDSNDI-NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIM 209 (626)
Q Consensus 132 ll~~l~~~l~~~~~-~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vr~~al~~l~~~~~ 209 (626)
++|.+. ...++. -.|+.....++..++.--. .....-+...+.+++++. |..||.++.+++...++
T Consensus 489 llpEl~--~~~~~~RiiRRRVa~ilg~Wvsvq~~----------~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vD 556 (978)
T KOG1993|consen 489 LLPELA--NDHGNSRIIRRRVAWILGQWVSVQQK----------LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVD 556 (978)
T ss_pred hCHHhh--hcccchhHHHHHHHHHHhhhhheech----------HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhh
Confidence 555555 112232 3667777888888762111 122355666788888887 77899999999998885
Q ss_pred c---cchHHHHhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhc--cCCChHHHHHHH
Q 006912 210 L---MPSALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN--KDTDDDVALEAC 283 (626)
Q Consensus 210 ~---~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~v~~~a~ 283 (626)
. .++.+.+.++++...+++++.. .+-+.|..++..+..+++...+.+.|+...++.++-..= ..+++-.|.+.+
T Consensus 557 D~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL 636 (978)
T KOG1993|consen 557 DWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALL 636 (978)
T ss_pred hccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHH
Confidence 4 4566777777777777776542 345678889999999999999999898887766654432 224455666667
Q ss_pred hHHHHhhcc
Q 006912 284 EFWHSYFEA 292 (626)
Q Consensus 284 ~~l~~l~~~ 292 (626)
..+..+...
T Consensus 637 ~~L~~lV~a 645 (978)
T KOG1993|consen 637 ATLRNLVNA 645 (978)
T ss_pred HHHHHHHHH
Confidence 777776654
No 143
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=0.019 Score=58.93 Aligned_cols=253 Identities=16% Similarity=0.135 Sum_probs=141.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh---cCCChHHHHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHhhcc--C
Q 006912 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYS---QFPDFNNYLAFILAR--AEGKSVEIRQAAGLLLKNNLRTAYKS--M 86 (626)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~---~~p~~~~~l~~il~~--~~~~~~~~r~~a~~~l~~~i~~~~~~--l 86 (626)
++.+.++++.++.++....++-..+...... -+.+|..++-.++.- ++...+.+-.+++.++. ...+ .
T Consensus 4 ~~r~~~If~k~Q~s~agh~~kl~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~-----sl~q~d~ 78 (892)
T KOG2025|consen 4 LERMQLIFNKIQQSDAGHYSKLLAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVE-----SLPQLDK 78 (892)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHH-----hhhccCc
Confidence 3455555555555554412333333333222 245566666555532 22334444444444432 2222 3
Q ss_pred ChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhc---CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhch
Q 006912 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (626)
Q Consensus 87 ~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~---~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~ 163 (626)
..+...++...++.....++..||...+++++.+.... ....++.+...+...+.+..|.+|..|+.+|..+=+.-.
T Consensus 79 e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 79 EEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred hhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence 44556667777777777889999999999999998632 234567777788888889999999999999988754222
Q ss_pred hccccCCCCCccchhhhhHHHHHHhc-CCCChHHHHHHHHHHHHHHhccchHHHH-------------------------
Q 006912 164 QVLDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKLSLGSVNQFIMLMPSALFV------------------------- 217 (626)
Q Consensus 164 ~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vr~~al~~l~~~~~~~~~~~~~------------------------- 217 (626)
+ ++ ..+...+...+ +||+++||.+|+-++..=-+..|-.+..
T Consensus 159 d---ee---------~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~l 226 (892)
T KOG2025|consen 159 D---EE---------CPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSL 226 (892)
T ss_pred C---Cc---------ccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Confidence 1 11 22333344444 5689999999998775433333311100
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHh
Q 006912 218 SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (626)
Q Consensus 218 ~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l 289 (626)
.+......+-..++|.+..++..+.+.+.. .++...-..+++.+-..--....+++..+++.+...
T Consensus 227 si~krv~LlewgLnDRe~sVk~A~~d~il~------~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 227 SIDKRVLLLEWGLNDREFSVKGALVDAILS------GWLRFSDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHH------HHhhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 011112223334556566666555544432 111111124555544444445567888888887774
No 144
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.54 E-value=0.0011 Score=57.08 Aligned_cols=94 Identities=21% Similarity=0.266 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH-hcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHhc
Q 006912 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEE-AAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTL---ADAVG 552 (626)
Q Consensus 477 ~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~-~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i---~~~~~ 552 (626)
+...+|.++..+.+....-+-.|...+..+++. .++.+.|.++.++..+.+.++..+.++...++.+|..+ ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 457788888888887777788999999999999 67889999999999999999999999999999999998 67788
Q ss_pred cccCChhhhhhhhHHHHHHHh
Q 006912 553 FELNQPVYLDILMPPLIAKWQ 573 (626)
Q Consensus 553 ~~~~~~~~~~~l~~~l~~~~~ 573 (626)
+.+. ||+.+++|.+. .+.
T Consensus 116 ~aLv--PyyrqLLp~ln-~f~ 133 (183)
T PF10274_consen 116 EALV--PYYRQLLPVLN-LFK 133 (183)
T ss_pred HHHH--HHHHHHHHHHH-HHH
Confidence 8886 79999998654 444
No 145
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.0035 Score=57.77 Aligned_cols=148 Identities=17% Similarity=0.254 Sum_probs=111.9
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCC
Q 006912 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (626)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (626)
+.-....+.+.+ |..+.-++..+..++..-++.+.+.+..++..++..+++....|-.+||.+++.+...+.+.
T Consensus 90 l~~~l~~L~s~d---W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~--- 163 (334)
T KOG2933|consen 90 LKQALKKLSSDD---WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS--- 163 (334)
T ss_pred HHHHHHHhchHH---HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH---
Confidence 333445566777 99999999999999988777788889999999999999999999999999999999887654
Q ss_pred CchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006912 471 QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (626)
Q Consensus 471 ~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~ 550 (626)
....+..++..|+..-...+..||..|-.||..++....+ ..+++.|...+.+.+..++..+.-+....+..
T Consensus 164 --i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 164 --IDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIR 235 (334)
T ss_pred --HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhcccccccee
Confidence 3445666666666554555789999999999999887643 34455566666666666666655555555554
Q ss_pred hc
Q 006912 551 VG 552 (626)
Q Consensus 551 ~~ 552 (626)
+|
T Consensus 236 l~ 237 (334)
T KOG2933|consen 236 LG 237 (334)
T ss_pred cc
Confidence 44
No 146
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=0.22 Score=54.63 Aligned_cols=186 Identities=16% Similarity=0.186 Sum_probs=121.4
Q ss_pred HHHHHHHHh---hcC-cchHHhHHHHHHHhhcCCC-CCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcC-CC
Q 006912 372 AAALDVLSN---VFG-DEILPTLMPVIQAKLSASG-DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DK 445 (626)
Q Consensus 372 ~~~l~~l~~---~~~-~~~~~~l~~~l~~~l~~~~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~-d~ 445 (626)
.+++..++. .+| ..+++.+.|++.+...++. ..++..+.||-.+++.+.--.......+ +|.+...+. ++
T Consensus 898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~----l~llftimeksp 973 (1251)
T KOG0414|consen 898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESH----LPLLFTIMEKSP 973 (1251)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHhcCC
Confidence 344444444 246 4788889999988886642 1228899999999999876544433344 455555554 79
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Q 006912 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHL 525 (626)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l 525 (626)
+|.||..++.++|.++-.++ ..+++.-+.++..++|+++.||..|...|..++-+---.+..++..+
T Consensus 974 ~p~IRsN~VvalgDlav~fp---------nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eM---- 1040 (1251)
T KOG0414|consen 974 SPRIRSNLVVALGDLAVRFP---------NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEM---- 1040 (1251)
T ss_pred Cceeeecchheccchhhhcc---------cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHH----
Confidence 99999999999999997765 34677778899999999999999999999999865433333333333
Q ss_pred HHHHhhhhHHHH--------------HHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhc
Q 006912 526 MMAFGKYQRRNL--------------RIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQ 574 (626)
Q Consensus 526 ~~~l~~~~~~~~--------------~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ 574 (626)
..++.+++.... ..++..|--++..+++.-....-+..+|..++..+++
T Consensus 1041 A~cl~D~~~~IsdlAk~FF~Els~k~n~iynlLPdil~~Ls~~~l~~~~~~~vm~~li~~ikk 1103 (1251)
T KOG0414|consen 1041 ALCLEDPNAEISDLAKSFFKELSSKGNTIYNLLPDILSRLSNGNLEEESYKTVMEFLIGLIKK 1103 (1251)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhhcccchhhhchHHHHhhccCcccchhhHHHHHHHHHHhcc
Confidence 333333322211 1344455555555443211113456788888877664
No 147
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.47 E-value=0.017 Score=57.79 Aligned_cols=139 Identities=13% Similarity=0.015 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCc
Q 006912 27 PSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAAD 106 (626)
Q Consensus 27 ~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~ 106 (626)
++.+ ++..|.-.|... +.|..+..++..+. +.++.+|..++..|. | +.. ......|...|.+++
T Consensus 67 ~~~e-v~~~aa~al~~~-~~~~~~~~L~~~L~---d~~~~vr~aaa~ALg------~--i~~---~~a~~~L~~~L~~~~ 130 (410)
T TIGR02270 67 DEPG-RVACAALALLAQ-EDALDLRSVLAVLQ---AGPEGLCAGIQAALG------W--LGG---RQAEPWLEPLLAASE 130 (410)
T ss_pred CChh-HHHHHHHHHhcc-CChHHHHHHHHHhc---CCCHHHHHHHHHHHh------c--CCc---hHHHHHHHHHhcCCC
Confidence 4445 766655555433 33555778888775 667889999888885 1 222 234456778888899
Q ss_pred HHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHH
Q 006912 107 RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (626)
Q Consensus 107 ~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~ 186 (626)
+.+|..+..+++... . +-.+.+...+++.++.+|..++.+++.+-. ....+.+.
T Consensus 131 p~vR~aal~al~~r~----~----~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------------------~~a~~~L~ 184 (410)
T TIGR02270 131 PPGRAIGLAALGAHR----H----DPGPALEAALTHEDALVRAAALRALGELPR------------------RLSESTLR 184 (410)
T ss_pred hHHHHHHHHHHHhhc----c----ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc------------------ccchHHHH
Confidence 999987776655522 1 123567777889999999999999988643 33455677
Q ss_pred HhcCCCChHHHHHHHHHHHHH
Q 006912 187 QFFQSPHTSLRKLSLGSVNQF 207 (626)
Q Consensus 187 ~~l~~~~~~vr~~al~~l~~~ 207 (626)
..+.+.++.||..|+.++..+
T Consensus 185 ~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 185 LYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHcCCCHHHHHHHHHHHHHc
Confidence 789999999999999888665
No 148
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.47 E-value=0.17 Score=59.89 Aligned_cols=371 Identities=13% Similarity=0.138 Sum_probs=190.7
Q ss_pred cCChhHHHHHHHhHhhhhhCC---cHHHHHHHHHHHHHHHhhc-------CcCchHHHHHHHHHHhccCChhHHhHHHHH
Q 006912 85 SMSPSNQQYIKSELLPCLGAA---DRHIRSTVGTIVSVVVQLG-------GIAGWLELLQALVTCLDSNDINHMEGAMDA 154 (626)
Q Consensus 85 ~l~~~~~~~i~~~L~~~l~~~---~~~vr~~~~~~l~~i~~~~-------~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~ 154 (626)
.++.+....+...|...-.++ ...-|.....-+..++... |...|.-+-+.+.+...+.+..++..|+..
T Consensus 1081 ~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAids 1160 (1780)
T PLN03076 1081 KLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDS 1160 (1780)
T ss_pred cCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 356555555555554432111 1112344444444444332 333444344445554445566788888888
Q ss_pred HHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCC
Q 006912 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP 233 (626)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 233 (626)
|..++-.+-+.- +..+ ....+.++.+|...+.+ .+.++|..+++|+.+++......+...=..++..+-..+.++
T Consensus 1161 LrQLs~kfle~e--EL~~--f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~ 1236 (1780)
T PLN03076 1161 LRQLSMKFLERE--ELAN--YNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDD 1236 (1780)
T ss_pred HHHHHHHhcchh--hhhc--hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCc
Confidence 888776554321 1000 13346777777776654 567999999999999987655444444345566666666777
Q ss_pred CHHHHHHHHHHHHHHHhhCccchh----hhHHHHHHHHHhhccC-CChHHHHHHHhHHHHhhcc----CCcchhHHhhhh
Q 006912 234 SAEVRKLVCAAFNLLIEVRPSFLE----PHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYFEA----QLPHENLKEFLP 304 (626)
Q Consensus 234 ~~~~~~~~~~~l~~l~~~~~~~~~----~~l~~l~~~~~~~~~~-~~~~v~~~a~~~l~~l~~~----~~~~~~~~~~l~ 304 (626)
++.+...+++.+..++..+-..+. ..+.+++..+...... .+.++...|++++..++.. +...........
T Consensus 1237 ~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~ 1316 (1780)
T PLN03076 1237 HKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKE 1316 (1780)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccc
Confidence 888889999999887765333221 3444555555544332 3455677777776644332 000000000000
Q ss_pred h--hHHHH-------hhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHH
Q 006912 305 R--LVPVL-------LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (626)
Q Consensus 305 ~--li~~l-------~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l 375 (626)
. ..+.. ...+...++....|= |.+........| +. -.+|..|...|
T Consensus 1317 ~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~---------------pLL~~Ls~l~~D----~R------lEVR~~ALqtL 1371 (1780)
T PLN03076 1317 APPSSPQSGKDGKQESGEFTDKDDHLYFWF---------------PLLAGLSELSFD----PR------PEIRKSALQVL 1371 (1780)
T ss_pred cccccccccccccccccccccchhHHHHHH---------------HHHHHHHHHhcC----Cc------HHHHHHHHHHH
Confidence 0 00000 000000000001110 000000000001 00 13899999888
Q ss_pred HHHHhhcCcch--------HH-hHHHHHHHhh---cC---------------C--CCCChhHHHHHHHHHHHHHccCc--
Q 006912 376 DVLSNVFGDEI--------LP-TLMPVIQAKL---SA---------------S--GDEAWKDREAAVLALGAIAEGCI-- 424 (626)
Q Consensus 376 ~~l~~~~~~~~--------~~-~l~~~l~~~l---~~---------------~--~~~~~~~r~aal~~l~~l~~~~~-- 424 (626)
-.+....|..+ +. .++|.+...= .. + +...|. .+....++..+++-..
T Consensus 1372 F~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~~AL~~lvdLft~f 1450 (1780)
T PLN03076 1372 FDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL-YETCTLALQLVVDLFVKF 1450 (1780)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHH
Confidence 77777776532 22 3445543211 00 0 111243 4555555555554432
Q ss_pred -cchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhc
Q 006912 425 -KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (626)
Q Consensus 425 -~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~ 489 (626)
+.+...++.++..+..++..++..+.+....|+.++....+. ....+....++..+.+.+.
T Consensus 1451 Fd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~----~F~~~~W~~i~~~~~~lf~ 1512 (1780)
T PLN03076 1451 YPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH----LFSDEKWLEVVLSLKEAAN 1512 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHHHH
Confidence 344567777777777788888999999999999998876543 2445555555555554443
No 149
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.42 E-value=0.0052 Score=53.21 Aligned_cols=140 Identities=23% Similarity=0.256 Sum_probs=106.6
Q ss_pred chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccC-ccchhhhHHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHH
Q 006912 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSK 462 (626)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~-~~~~~~~l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~ 462 (626)
..+..+...+.+++++++ +..|-+++..++.+++.+ .+.+..+-..-+..++..++. +.+.++..++.+++.+..
T Consensus 21 ~~l~~l~~ri~~LL~s~~---~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKS---AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHHHHHhCCCC---hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 345677788899999988 999999999999999988 455556666667777777764 456789999999999998
Q ss_pred HHhhhc--CCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Q 006912 463 FIVQDI--GHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAF 529 (626)
Q Consensus 463 ~~~~~~--~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l 529 (626)
...+.. .....-+.+..+++.+++.+++ ..+...++.+|..++...+..+.||...+-..+...+
T Consensus 98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 98 LIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred HhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 765431 0011245567777777777665 5667889999999999999999999998877776654
No 150
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.41 E-value=0.27 Score=59.30 Aligned_cols=246 Identities=18% Similarity=0.162 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHhc----CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh--ccCChh-H--HHHHHHhH-hhh
Q 006912 32 DKSQIWQQLQQYSQ----FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY--KSMSPS-N--QQYIKSEL-LPC 101 (626)
Q Consensus 32 ~r~~a~~~L~~~~~----~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~--~~l~~~-~--~~~i~~~L-~~~ 101 (626)
.-..|.+.+..+.. .+.+...+..-... ..++++|..++..+...+...- .+.++- . .+.+.+.+ --+
T Consensus 460 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~a 537 (2341)
T KOG0891|consen 460 DIQLAFKTLGGFKFSGYSLTLFVQQCVDSYLE--ADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVA 537 (2341)
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHh
Confidence 44446666666543 34455553333333 6789999999777665543211 111111 1 12222222 223
Q ss_pred hhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhh
Q 006912 102 LGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (626)
Q Consensus 102 l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~i 181 (626)
++++++.+|...-..+. -+.+..-.-|+.+..+...+.+..-..+..+...++.+++..+..+. ..+
T Consensus 538 ia~~~~~i~~~v~~~l~--~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl-----------~~l 604 (2341)
T KOG0891|consen 538 IADTDPDIRIRVLSSLN--ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVL-----------PSL 604 (2341)
T ss_pred ccCCCcchhhhHHhhhc--cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHh-----------HHH
Confidence 45677777665444333 11122223356666677777777777777777777777665543221 111
Q ss_pred HHHHHHhcCC----CChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchh
Q 006912 182 LPRLLQFFQS----PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (626)
Q Consensus 182 l~~l~~~l~~----~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (626)
-...+..++. ....+.....+-+..++...+.-..+++.+++..+...+.+++..+-+.+..++..++...++...
T Consensus 605 r~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~ 684 (2341)
T KOG0891|consen 605 RKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMV 684 (2341)
T ss_pred HHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhh
Confidence 1112222222 222333333333444444445555666667777777778888888888999999999998887776
Q ss_pred hhHHHHHHHHHhhccCCC-hHHHHHHHhHHHHhhcc
Q 006912 258 PHLRNLFEYMLQVNKDTD-DDVALEACEFWHSYFEA 292 (626)
Q Consensus 258 ~~l~~l~~~~~~~~~~~~-~~v~~~a~~~l~~l~~~ 292 (626)
.+++.++..+.+.+.+.+ ..-|..++..++.+++.
T Consensus 685 ~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 685 KWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred hccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 666767776666665543 33466777888887765
No 151
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.40 E-value=0.0033 Score=53.97 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=94.9
Q ss_pred HHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcC-----CCchHHHHHHHHHHHHHH
Q 006912 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRFS 461 (626)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~ 461 (626)
.|.+++.+.+.+..+. +|..|..++.++|.++.-- |+.-. .+..... +.+...........+.
T Consensus 8 yP~LL~~L~~iLk~e~--s~~iR~E~lr~lGilGALD-----P~~~k---~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 75 (160)
T PF11865_consen 8 YPELLDILLNILKTEQ--SQSIRREALRVLGILGALD-----PYKHK---SIQKSLDSKSSENSNDESTDISLPMMGI-- 75 (160)
T ss_pred hHHHHHHHHHHHHhCC--CHHHHHHHHHHhhhccccC-----cHHHh---cccccCCccccccccccchhhHHhhccC--
Confidence 4678888888887653 2999999999999997743 22211 1111111 1122222222111110
Q ss_pred HHHhhhcCCCchhhhHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHH
Q 006912 462 KFIVQDIGHQNGREQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIV 540 (626)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~ 540 (626)
. +...+-|..-++..++..++|++ ..-+..+..|+..+++..+....||++.+++.++..+....+..++..
T Consensus 76 ---~----~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~ 148 (160)
T PF11865_consen 76 ---S----PSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFY 148 (160)
T ss_pred ---C----CchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHH
Confidence 0 00123344556788888899876 445668899999999888888899999999999999998777666677
Q ss_pred HHHHHHHHHH
Q 006912 541 YDAIGTLADA 550 (626)
Q Consensus 541 ~~~l~~i~~~ 550 (626)
+.-++.++.-
T Consensus 149 ~~qL~~lv~i 158 (160)
T PF11865_consen 149 FQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 152
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.024 Score=59.35 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=108.3
Q ss_pred hHHHHHHHHhhhcCCC-chHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Q 006912 430 HLSEIVAFLIPLLDDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD-TNKRVQEAACSAFATLE 507 (626)
Q Consensus 430 ~l~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d-~~~~v~~~a~~al~~l~ 507 (626)
.++.++|.++..+++. ++.+...||.++..+++.++... ....-+..+|.++..|.. ..-.|.+.++.||..+-
T Consensus 208 pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~----a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iS 283 (1051)
T KOG0168|consen 208 PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS----AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKIS 283 (1051)
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh----heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 3567899999999875 68999999999999999998641 111122356666665553 34678999999999998
Q ss_pred HHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCCCCccchHHH
Q 006912 508 EEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLE 587 (626)
Q Consensus 508 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 587 (626)
+.-+.++.. ..-+...+..++...-..++.|+...++++..+..+-+ .|+-..+|.|...+... +++-+....-
T Consensus 284 R~H~~AiL~--AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f--~~v~ealPlL~~lLs~~--D~k~ies~~i 357 (1051)
T KOG0168|consen 284 RRHPKAILQ--AGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF--HFVMEALPLLTPLLSYQ--DKKPIESVCI 357 (1051)
T ss_pred hhccHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHHHhhc--cchhHHHHHH
Confidence 765433321 11233345556666667888888888888888877765 68888888777777642 2333456677
Q ss_pred HHHHHHHHh
Q 006912 588 CFTSIAQAL 596 (626)
Q Consensus 588 ~~~~l~~~~ 596 (626)
|+.+++..+
T Consensus 358 c~~ri~d~f 366 (1051)
T KOG0168|consen 358 CLTRIADGF 366 (1051)
T ss_pred HHHHHHHhc
Confidence 777777654
No 153
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.31 E-value=0.34 Score=51.94 Aligned_cols=135 Identities=11% Similarity=0.047 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcC-CCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l 484 (626)
..+|.-+...++.++-.- .......+|.+.+.|+ +....+|...+.+++.+|.... -..+.-+|.+
T Consensus 945 ~~vra~~vvTlakmcLah----~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT---------am~d~YiP~I 1011 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAH----DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT---------AMTDRYIPMI 1011 (1529)
T ss_pred hHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH---------HHHHHhhHHH
Confidence 456666666666665422 1234457888888886 5678899999999998887542 2345567889
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccC
Q 006912 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELN 556 (626)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~ 556 (626)
..+|.|+++.||..+...|.+++.. .+..+-..++=.++-.+-+.+.+.+..+=-+++.+...-.+.++
T Consensus 1012 ~~~L~Dp~~iVRrqt~ilL~rLLq~---~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f 1080 (1529)
T KOG0413|consen 1012 AASLCDPSVIVRRQTIILLARLLQF---GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFF 1080 (1529)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhh---hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccch
Confidence 9999999999999999999999864 22333333333333333344556666666677777776655554
No 154
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.31 E-value=0.00052 Score=40.25 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=27.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Q 006912 480 VLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (626)
Q Consensus 480 ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (626)
++|.+++.++|+++.||.+|+.+|+.+++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 5789999999999999999999999998754
No 155
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.03 Score=60.10 Aligned_cols=207 Identities=17% Similarity=0.199 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHhcC----------CChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhcc---CChhHHHHHHHh-
Q 006912 32 DKSQIWQQLQQYSQF----------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS---MSPSNQQYIKSE- 97 (626)
Q Consensus 32 ~r~~a~~~L~~~~~~----------p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~---l~~~~~~~i~~~- 97 (626)
-|-+|...|..|.+. =++.+|.+.+|. ++-.+. |..+.--|.+ +++..+..+.+.
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQ---S~a~EL--------rpiLVFIWAKILAvD~SCQ~dLvKe~ 554 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQ---SSAREL--------RPILVFIWAKILAVDPSCQADLVKEN 554 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhc---cchHhh--------hhhHHHHHHHHHhcCchhHHHHHhcc
Confidence 788899999998762 255677777775 333333 4444444654 566666555443
Q ss_pred ----HhhhhhC---CcHHHHHHHHHHHHHHHhhcCcCch----HHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhhchhc
Q 006912 98 ----LLPCLGA---ADRHIRSTVGTIVSVVVQLGGIAGW----LELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQV 165 (626)
Q Consensus 98 ----L~~~l~~---~~~~vr~~~~~~l~~i~~~~~~~~~----~~ll~~l~~~l~~~-~~~~r~~~l~~l~~l~~~~~~~ 165 (626)
.++.|.. -++.-|..++-+|+.|+.....++- .+++......++++ .+-.|+-.+.||+.+-+.+...
T Consensus 555 g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~A 634 (1387)
T KOG1517|consen 555 GYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEA 634 (1387)
T ss_pred CceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchh
Confidence 3334433 2457899999999999987533222 56777777777774 6889999999999999988753
Q ss_pred cccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHH----------------HhHHHHHH----H
Q 006912 166 LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF----------------VSMDQYLQ----G 225 (626)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~----------------~~~~~~l~----~ 225 (626)
- ..| .-......++..+.|+.++||.+|+-+|+.++....+.+. ...++++. .
T Consensus 635 r---w~G----~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 635 R---WSG----RRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred h---hcc----ccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 1 111 1133455788899999999999999999999985311110 11223332 4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhCccch
Q 006912 226 LFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (626)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 256 (626)
+..++++.++-+|++...+|..++-.+...+
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~ 738 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHL 738 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHh
Confidence 5566788888899988888887776655443
No 156
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.29 E-value=0.0032 Score=54.75 Aligned_cols=145 Identities=16% Similarity=0.152 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHHccC-ccchhhhHHHHHHHH------------hhhcCCCchHHHHHHHHHHHHHHHHHhhhcC----
Q 006912 407 KDREAAVLALGAIAEGC-IKGLYPHLSEIVAFL------------IPLLDDKFPLIRSISCWTLSRFSKFIVQDIG---- 469 (626)
Q Consensus 407 ~~r~aal~~l~~l~~~~-~~~~~~~l~~l~~~l------------~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---- 469 (626)
++|.+|+.++..++... ++.+..|-..++|.- ...+.|+++.||.+|+.++..+.+.......
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 47999999999999984 445555555555432 3344699999999999999998865443210
Q ss_pred ---CC--------chhhhHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhc-ccc-cchHHHHHHHHHHHHhhhhHH
Q 006912 470 ---HQ--------NGREQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAA-EEL-APRLEIILQHLMMAFGKYQRR 535 (626)
Q Consensus 470 ---~~--------~~~~~~~~ll~~l~~~l~d-~~~~v~~~a~~al~~l~~~~~-~~~-~~~l~~i~~~l~~~l~~~~~~ 535 (626)
+. .....+..+-..++..++. .++.+....++++..++...+ +.+ ..+++.++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 00 0122334444555556654 467888899999999998875 333 357888888888888887777
Q ss_pred HHHHHHHHHHHHHHHh
Q 006912 536 NLRIVYDAIGTLADAV 551 (626)
Q Consensus 536 ~~~~~~~~l~~i~~~~ 551 (626)
++..++.+++.++...
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 8888888988887654
No 157
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.36 Score=50.32 Aligned_cols=120 Identities=19% Similarity=0.135 Sum_probs=92.7
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcC-CCchHHHHHHHHHHHHHHHHHhhhcCCCchhhh
Q 006912 398 LSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ 476 (626)
Q Consensus 398 l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 476 (626)
+++.+ --+|.+|..++|-+.-..++ .+|.+++.|. +-||.||..++.+||-.|..-+
T Consensus 564 VsD~n---DDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG----------- 621 (929)
T KOG2062|consen 564 VSDVN---DDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTG----------- 621 (929)
T ss_pred ccccc---hHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-----------
Confidence 55666 78999999999877654332 3455555554 5689999999999998885432
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHH
Q 006912 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRI 539 (626)
Q Consensus 477 ~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~ 539 (626)
....+..|-....|+..-||..|+.+++.+.-.+.+..-|-...+.+.+.+.+.+.++..+..
T Consensus 622 ~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK 684 (929)
T KOG2062|consen 622 LKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAK 684 (929)
T ss_pred cHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHH
Confidence 233445555566788899999999999999999999999999999999999998877766553
No 158
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.22 E-value=0.0045 Score=53.29 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=87.1
Q ss_pred HHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH---H
Q 006912 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE---E 508 (626)
Q Consensus 432 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~---~ 508 (626)
...+|.+...+......-|..|...+..+.+... +....+.+++++..+-..++..++.|...++.+|..++ +
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~----~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGG----GEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 4568888888887666667777777777776622 12467888999999999999999999999999999994 4
Q ss_pred HhcccccchHHHHHHHHHHHHhhh----------hHH-HHHHHHHHHHHHHHHhcccc
Q 006912 509 EAAEELAPRLEIILQHLMMAFGKY----------QRR-NLRIVYDAIGTLADAVGFEL 555 (626)
Q Consensus 509 ~~~~~~~~~l~~i~~~l~~~l~~~----------~~~-~~~~~~~~l~~i~~~~~~~~ 555 (626)
..|+++.||+..+++.+--..++. ..+ ..+.+-++|..+-+..|++.
T Consensus 113 ~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA 170 (183)
T PF10274_consen 113 MVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDA 170 (183)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhH
Confidence 568999999999998765444332 111 22355666666666666543
No 159
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.037 Score=52.57 Aligned_cols=144 Identities=15% Similarity=0.046 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHHHHHccCccchh-hhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~-~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l 484 (626)
...|+.|+.-|..+++....... -.+. .+..++..++++++.+|..|+|+||.....-+.. ...-.-...++.|
T Consensus 97 le~ke~ald~Le~lve~iDnAndl~~~g-gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~----Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNANDLISLG-GLVPLLGYLENSDAELRELAARVIGTAVQNNPKS----QEQVIELGALSKL 171 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHhhcc-CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH----HHHHHHcccHHHH
Confidence 88999999999999887642211 1112 2334445889999999999999999998765532 0111112356677
Q ss_pred HHHhcc-CCHHHHHHHHHHHHHHHHHhcccccchHH-HHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHhccc
Q 006912 485 LKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLE-IILQHLMMAFGKYQR--RNLRIVYDAIGTLADAVGFE 554 (626)
Q Consensus 485 ~~~l~d-~~~~v~~~a~~al~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~--~~~~~~~~~l~~i~~~~~~~ 554 (626)
+..+.. .+-.+|..|..|++.++++.......|+. .=...|..+++..+. ..++.++..++.+.+.-..+
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh
Confidence 777764 45688999999999999987654433322 114556777777533 44568888888888765433
No 160
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.016 Score=59.68 Aligned_cols=167 Identities=18% Similarity=0.175 Sum_probs=107.8
Q ss_pred HhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHh
Q 006912 43 YSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQ 122 (626)
Q Consensus 43 ~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~ 122 (626)
+..++++=++.-.++. +.+|-+|......+- +... .-..-..|+..|--...+.+..||+++..+++-++-
T Consensus 514 ygrqe~Ad~lI~el~~---dkdpilR~~Gm~t~a--lAy~----GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 514 YGRQEDADPLIKELLR---DKDPILRYGGMYTLA--LAYV----GTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF 584 (929)
T ss_pred hhhhhhhHHHHHHHhc---CCchhhhhhhHHHHH--HHHh----ccCchhhHHHhhcccccccchHHHHHHHHHheeeEe
Confidence 3344555444444443 446666654433322 1111 011123455555556788999999999999998876
Q ss_pred hcCcCchHHHHHHHHHHhc-cCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHH
Q 006912 123 LGGIAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSL 201 (626)
Q Consensus 123 ~~~~~~~~~ll~~l~~~l~-~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al 201 (626)
.+ |+..|...+.+. +-++.+|.++..+|+-.|...+. ...+..+-....|+..-||+.|+
T Consensus 585 ~d-----p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~--------------~eAi~lLepl~~D~~~fVRQgAl 645 (929)
T KOG2062|consen 585 RD-----PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL--------------KEAINLLEPLTSDPVDFVRQGAL 645 (929)
T ss_pred cC-----hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc--------------HHHHHHHhhhhcChHHHHHHHHH
Confidence 65 455566666664 56899999999999988876553 22333344445677778999999
Q ss_pred HHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHH
Q 006912 202 GSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEV 237 (626)
Q Consensus 202 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 237 (626)
-++.-+.-...+.+.+.+..+-+.+.+.+.+..++.
T Consensus 646 Ia~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 646 IALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence 999888766566666777777777777777766554
No 161
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=97.16 E-value=0.0065 Score=58.01 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=103.3
Q ss_pred chhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccc----c--chHHHHHHHHHHHHh--------hhhHHHH
Q 006912 472 NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL----A--PRLEIILQHLMMAFG--------KYQRRNL 537 (626)
Q Consensus 472 ~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~----~--~~l~~i~~~l~~~l~--------~~~~~~~ 537 (626)
....++..++|.++..++|.++.+|..++.++..+++.++... . ...+.+-+.+..++- .......
T Consensus 112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL 191 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence 4678899999999999999999999999999999999885433 2 335555555655554 2223445
Q ss_pred HHHHHHHHHHHHHhcc---ccCChhhhhhhhHHHHHHHhcCCC-CCCcc-chHHHHHHHHHHHhccccccchHHHHHHHH
Q 006912 538 RIVYDAIGTLADAVGF---ELNQPVYLDILMPPLIAKWQQLPN-SDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCI 612 (626)
Q Consensus 538 ~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~-~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~ 612 (626)
..++.|+-.++..... ......+...+...++..+..... ....+ ...++.+..+...+|...+.|+..+++.+.
T Consensus 192 ~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 192 QAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6788888888776421 111112333333335555544331 12333 477888999999999999999999999999
Q ss_pred HHHHHHH
Q 006912 613 NIIQTQQ 619 (626)
Q Consensus 613 ~~l~~~~ 619 (626)
+++++++
T Consensus 272 ~~l~npf 278 (282)
T PF10521_consen 272 QILENPF 278 (282)
T ss_pred HHhcCCC
Confidence 9998865
No 162
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.14 E-value=0.11 Score=50.31 Aligned_cols=127 Identities=15% Similarity=0.143 Sum_probs=90.4
Q ss_pred HHHHHHccCccchhh--hHHHHHHH-HhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccC
Q 006912 415 ALGAIAEGCIKGLYP--HLSEIVAF-LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT 491 (626)
Q Consensus 415 ~l~~l~~~~~~~~~~--~l~~l~~~-l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~ 491 (626)
....+.+.+...+.+ .+..++.. +++.++++++.||..|+.|+|-++-.-. ..-...++.+...++..
T Consensus 6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---------~~a~~~l~l~~~~~~~~ 76 (298)
T PF12719_consen 6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---------ELAKEHLPLFLQALQKD 76 (298)
T ss_pred HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---------HHHHHHHHHHHHHHHhC
Confidence 334444444433333 44577764 4589999999999999999999986533 33444556666666556
Q ss_pred CHHHHHHHHHHHHHHHHHhccccc---------chHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006912 492 NKRVQEAACSAFATLEEEAAEELA---------PRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (626)
Q Consensus 492 ~~~v~~~a~~al~~l~~~~~~~~~---------~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~ 550 (626)
++.|+..|+.++-.++...|.... .....+++.+...+...+.+.+..+.++++.+.-.
T Consensus 77 ~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 77 DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 899999999999999987663322 23457888888888888778888999999887644
No 163
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.035 Score=56.99 Aligned_cols=203 Identities=16% Similarity=0.169 Sum_probs=125.4
Q ss_pred HhhccCChhHHHHHHHhHhhhhh-----CCcHHHHHHHHHHHHHHHhhc-CcCchHHH-----HHHHHHHhccCChhHHh
Q 006912 81 TAYKSMSPSNQQYIKSELLPCLG-----AADRHIRSTVGTIVSVVVQLG-GIAGWLEL-----LQALVTCLDSNDINHME 149 (626)
Q Consensus 81 ~~~~~l~~~~~~~i~~~L~~~l~-----~~~~~vr~~~~~~l~~i~~~~-~~~~~~~l-----l~~l~~~l~~~~~~~r~ 149 (626)
+-|+..+-+..+.|-.-.++.+- -+...+-...-.+++.+...- ..+...++ =|.+...++..|..+|-
T Consensus 113 rAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~Vrs 192 (1005)
T KOG1949|consen 113 RAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRS 192 (1005)
T ss_pred HHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhh
Confidence 45776555555555555555442 122233344444556555331 12222333 36778888999999999
Q ss_pred HHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHh----ccchHHHHhHHHHHHH
Q 006912 150 GAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM----LMPSALFVSMDQYLQG 225 (626)
Q Consensus 150 ~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~----~~~~~~~~~~~~~l~~ 225 (626)
.|+..+..++--.++....+ -++..+..-...+..+|.|+-+.||..|.+-+..++. .+|+... ..++..
T Consensus 193 nAa~lf~~~fP~~dpd~~~e---~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~---~~ll~k 266 (1005)
T KOG1949|consen 193 NAALLFVEAFPIRDPDLHAE---EMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTIL---IDLLKK 266 (1005)
T ss_pred hHHHHHHHhccCCCCCccHH---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHH---HHHHHH
Confidence 99888876655444332110 0123344445568888999999999988776665553 3454332 233444
Q ss_pred HHH-hcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhc
Q 006912 226 LFL-LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (626)
Q Consensus 226 l~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~ 291 (626)
++. +..|...+||..+++.|..++.....+ +.++.+++.+-..+.|..+.||.++.+.+..+-.
T Consensus 267 I~d~~a~dt~s~VR~svf~gl~~~l~np~sh--~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 267 ITDELAFDTSSDVRCSVFKGLPMILDNPLSH--PLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHhhhccchheehhHhcCcHHHHcCccch--hHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 444 445667799999999999988764432 4456666766667888889999998888776643
No 164
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.10 E-value=0.17 Score=47.47 Aligned_cols=227 Identities=11% Similarity=0.080 Sum_probs=143.9
Q ss_pred cHHHHHHHHHHHHHhhcCcc-----hHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhh
Q 006912 366 NLRKCSAAALDVLSNVFGDE-----ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP 440 (626)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~-----~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~ 440 (626)
..|..|..+|..+...++.. -+..++.++...+.+ +..-..++.++..+.. +...-......++..+.+
T Consensus 14 ~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-----~~~~~~~l~gl~~L~~-~~~~~~~~~~~i~~~l~~ 87 (262)
T PF14500_consen 14 IIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-----HACVQPALKGLLALVK-MKNFSPESAVKILRSLFQ 87 (262)
T ss_pred HHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-----HhhHHHHHHHHHHHHh-CcCCChhhHHHHHHHHHH
Confidence 57999999999998888752 345667777777743 5555555888888773 222223345556666665
Q ss_pred hcC--CCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhcccccch
Q 006912 441 LLD--DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEAAEELAPR 517 (626)
Q Consensus 441 ~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~-d~~~~v~~~a~~al~~l~~~~~~~~~~~ 517 (626)
... .-....|..+...+..+.+..... ....-..++..++..++ +.+|+--..+...+..+..... +.++
T Consensus 88 ~~~~q~~~q~~R~~~~~ll~~l~~~~~~~-----l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~ 160 (262)
T PF14500_consen 88 NVDVQSLPQSTRYAVYQLLDSLLENHREA-----LQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEF 160 (262)
T ss_pred hCChhhhhHHHHHHHHHHHHHHHHHhHHH-----HHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchh
Confidence 443 234577888888888887765443 34444567777777776 4578877888888888777665 3566
Q ss_pred HHHHHHHHHHHHhh-----hhHH---HHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCCCCccchHHHHH
Q 006912 518 LEIILQHLMMAFGK-----YQRR---NLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECF 589 (626)
Q Consensus 518 l~~i~~~l~~~l~~-----~~~~---~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 589 (626)
.+.+.+.+...+.- .++. ..+..-.+|-....+ .|.|.+..+|.+++.+.... ......+++++
T Consensus 161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s------~~~fa~~~~p~LleKL~s~~--~~~K~D~L~tL 232 (262)
T PF14500_consen 161 AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS------TPLFAPFAFPLLLEKLDSTS--PSVKLDSLQTL 232 (262)
T ss_pred HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC------cHhhHHHHHHHHHHHHcCCC--cHHHHHHHHHH
Confidence 66666665554432 1111 122222332222222 23477788898888887532 22235788888
Q ss_pred HHHHHHhcc-ccccchHHHHHHHHH
Q 006912 590 TSIAQALGA-GFTQFAQPVFQRCIN 613 (626)
Q Consensus 590 ~~l~~~~g~-~f~~~~~~i~~~l~~ 613 (626)
...+...|. .+.||...++..+-.
T Consensus 233 ~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 233 KACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 888888887 578888888876643
No 165
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.07 E-value=0.086 Score=53.09 Aligned_cols=174 Identities=15% Similarity=0.097 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc----CCChHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHHHHhhccC
Q 006912 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ----FPDFNNYLAFILARAEG--KSVEIRQAAGLLLKNNLRTAYKSM 86 (626)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~----~p~~~~~l~~il~~~~~--~~~~~r~~a~~~l~~~i~~~~~~l 86 (626)
.++...++++.++.+-.. -|+...+.. .+.. +.+|...+-.||...++ ..+.+- .++++.+...-..-
T Consensus 9 ~~~s~~~if~k~Q~s~aG-hrk~~a~l~-~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil----~fl~~f~~Y~~~~d 82 (885)
T COG5218 9 SLESMQLIFNKIQQSSAG-HRKSLAELM-EMLTAHEFSEEFLRVVNTILACKKNPSIPDRIL----SFLKRFFEYDMPDD 82 (885)
T ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHH-HHHHHHhhHHHHHHHHHHhhccccCCCcHHHHH----HHHHHHHHhcCCCC
Confidence 566777888887766555 666554443 3322 23444555556654332 223332 33443333221221
Q ss_pred Ch--hHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc---CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhh
Q 006912 87 SP--SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI---AGWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (626)
Q Consensus 87 ~~--~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~---~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~ 161 (626)
++ +....+...++.++.+++..||...+++++.+.....+ .-++.++..+.+.+-+-++.+|.-|+.+|..+-+.
T Consensus 83 peg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 83 PEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM 162 (885)
T ss_pred hhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence 11 23345555666667788999999999999999876432 34577778888888888999999999999877543
Q ss_pred chhccccCCCCCccchhhhhHHHHHHhc-CCCChHHHHHHHHHH
Q 006912 162 IPQVLDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKLSLGSV 204 (626)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vr~~al~~l 204 (626)
.... -+.+...+...+ .||+.+||..|+--+
T Consensus 163 ~~ne------------en~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 163 ELNE------------ENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred cCCh------------HHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 3221 123333333333 468889999988544
No 166
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.25 Score=53.15 Aligned_cols=99 Identities=20% Similarity=0.073 Sum_probs=78.4
Q ss_pred chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccC---ccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q 006912 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC---IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (626)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~---~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (626)
+++..++.....++++++ -..|..++.++.....-+ ++.+-|.+.+..|.++..+.+.+|.+...|+.++-+++
T Consensus 799 ~iv~kIl~r~~~~LS~e~---l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~ 875 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHES---LRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMG 875 (1014)
T ss_pred HHHHHHHHHHHHHhcchh---HHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 455677778888999998 999999998876644433 34566888889999999999999999999999999999
Q ss_pred HHHhhhcCCCchhhhHHHHHHHHHHHhcc
Q 006912 462 KFIVQDIGHQNGREQFEKVLMGLLKRILD 490 (626)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~ll~~l~~~l~d 490 (626)
++.++++ ...++..++|.+-..+++
T Consensus 876 ~~sgDFv----~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 876 KYSGDFV----ASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHhhhHH----HHHHHHHHHHHHHHHHHH
Confidence 9988773 456677777777655544
No 167
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=0.012 Score=64.02 Aligned_cols=178 Identities=18% Similarity=0.213 Sum_probs=133.0
Q ss_pred HHHHHHHHHHhhc---C-cCchHHHHHHHHHHhcc----CChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHH
Q 006912 112 TVGTIVSVVVQLG---G-IAGWLELLQALVTCLDS----NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (626)
Q Consensus 112 ~~~~~l~~i~~~~---~-~~~~~~ll~~l~~~l~~----~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~ 183 (626)
..+..+..|+... + ..-...+.|.+...+.+ ++|..+.+|..+|+++.--..+ ....-+|
T Consensus 896 d~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~------------fces~l~ 963 (1251)
T KOG0414|consen 896 DLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE------------FCESHLP 963 (1251)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH------------HHHHHHH
Confidence 3456777777653 4 34567888999998854 4788999999999998765543 3466788
Q ss_pred HHHHhcC-CCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHH
Q 006912 184 RLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (626)
Q Consensus 184 ~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 262 (626)
.++..+. ++++.+|..++-+++.++-..|. .++.|.+.++..+.|+++.+|+.|+-++..++-+..-.++.++.+
T Consensus 964 llftimeksp~p~IRsN~VvalgDlav~fpn----lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~e 1039 (1251)
T KOG0414|consen 964 LLFTIMEKSPSPRIRSNLVVALGDLAVRFPN----LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSE 1039 (1251)
T ss_pred HHHHHHhcCCCceeeecchheccchhhhccc----ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHH
Confidence 9999998 68999999999999888765443 344667889999999999999999999999987766666665554
Q ss_pred HHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhccc
Q 006912 263 LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIY 316 (626)
Q Consensus 263 l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~ 316 (626)
+..++.|+++.++..|=.|...+.... +. +-+++|.++..+.+
T Consensus 1040 ----MA~cl~D~~~~IsdlAk~FF~Els~k~---n~----iynlLPdil~~Ls~ 1082 (1251)
T KOG0414|consen 1040 ----MALCLEDPNAEISDLAKSFFKELSSKG---NT----IYNLLPDILSRLSN 1082 (1251)
T ss_pred ----HHHHhcCCcHHHHHHHHHHHHHhhhcc---cc----hhhhchHHHHhhcc
Confidence 445678999999999988988887752 22 23455555555543
No 168
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.0083 Score=55.35 Aligned_cols=134 Identities=16% Similarity=0.199 Sum_probs=101.5
Q ss_pred cccHHHHHHHHHHHHHhhcCcch---HHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhh
Q 006912 364 VWNLRKCSAAALDVLSNVFGDEI---LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP 440 (626)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~---~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~ 440 (626)
+|...-.+...+..++..=++.+ +..++-.+.+.++++. ..+-.+|+.+++.+.......+...++.++..++.
T Consensus 101 dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlR---S~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ 177 (334)
T KOG2933|consen 101 DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLR---SAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLH 177 (334)
T ss_pred HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46665556666666666555433 3345555566666766 78899999999999998877776777888888888
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc
Q 006912 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (626)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~ 511 (626)
.-..++..||..|-.+|..+..+..+ ..+++.+..++++.++.++..++.++.+.....+
T Consensus 178 ka~~dnrFvreda~kAL~aMV~~vtp-----------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 178 KASQDNRFVREDAEKALVAMVNHVTP-----------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred hhcccchHHHHHHHHHHHHHHhccCh-----------HHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 87888999999999999988876542 4466777777888899999999999988877665
No 169
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.98 E-value=0.4 Score=46.63 Aligned_cols=198 Identities=14% Similarity=0.174 Sum_probs=128.3
Q ss_pred HHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc-----------CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhc
Q 006912 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-----------AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (626)
Q Consensus 94 i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~-----------~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~ 162 (626)
+...|+..|..-+-..|+.++.+++.+.+.... .+||+++..+..+..+++- --.+-.+|+.+++.-
T Consensus 77 ll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~di--al~~g~mlRec~k~e 154 (335)
T PF08569_consen 77 LLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDI--ALNCGDMLRECIKHE 154 (335)
T ss_dssp HHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTT--HHHHHHHHHHHTTSH
T ss_pred HHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccc--cchHHHHHHHHHhhH
Confidence 445566666666777788888888888776421 3457778888887776653 222333444444321
Q ss_pred h--hccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccc----hHHHHhHHHHHHHHHHhcCCCCHH
Q 006912 163 P--QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP----SALFVSMDQYLQGLFLLSNDPSAE 236 (626)
Q Consensus 163 ~--~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~ 236 (626)
. ..+- -...+..+++..+.++-++..-|+.++..+...-+ +.+..+...++...-.++..++--
T Consensus 155 ~l~~~iL----------~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv 224 (335)
T PF08569_consen 155 SLAKIIL----------YSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYV 224 (335)
T ss_dssp HHHHHHH----------TSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred HHHHHHh----------CcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence 1 1110 12334457788888999999999999998876543 345556667788777888888888
Q ss_pred HHHHHHHHHHHHHhhC--ccchhhhHH--HHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhh
Q 006912 237 VRKLVCAAFNLLIEVR--PSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL 303 (626)
Q Consensus 237 ~~~~~~~~l~~l~~~~--~~~~~~~l~--~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l 303 (626)
+|..+++.|+.++... ...+..|+. .-+..++..+.+....++..|+.++--++..+.....+..++
T Consensus 225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL 295 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDIL 295 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHH
T ss_pred eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHH
Confidence 9999999999998543 345556664 556677888999999999999998888777655554444433
No 170
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.95 E-value=0.15 Score=49.29 Aligned_cols=118 Identities=15% Similarity=0.171 Sum_probs=88.1
Q ss_pred HHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCC
Q 006912 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (626)
Q Consensus 92 ~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~ 171 (626)
.-+...+.+++.+++..+|..+.+++|..+-.+. ..-.+.++.+.+.++.++..++..++.++..+.-.++...-....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 3344455589999999999999999999987753 444677888888887778899999999999888877653221110
Q ss_pred C-CccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhc
Q 006912 172 G-LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (626)
Q Consensus 172 ~-~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (626)
. -.......++..+..++.+.+++++..|++.+..+.-.
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 0 00123467888888999998999999999999987743
No 171
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.94 E-value=0.018 Score=62.98 Aligned_cols=175 Identities=18% Similarity=0.216 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHhhcCcch---HHhHHHHHHHhhcCC-CCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhc
Q 006912 367 LRKCSAAALDVLSNVFGDEI---LPTLMPVIQAKLSAS-GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL 442 (626)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~---~~~l~~~l~~~l~~~-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l 442 (626)
-|+.|..+|..+++.+|+.+ +|.+-..+...+... +.++ .-...+..+..+....+..+.+ +-..+|.+....
T Consensus 749 errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d--~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~ 825 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND--EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFV 825 (1549)
T ss_pred HhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc--chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhc
Confidence 48889999999999999844 444445444444432 1110 1111122222333333333444 556778888999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHH-HHHHhcccccchHHHH
Q 006912 443 DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFAT-LEEEAAEELAPRLEII 521 (626)
Q Consensus 443 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~-l~~~~~~~~~~~l~~i 521 (626)
.+.++.+|.+|+.+++.+.+... .+.+..++..++..+++.+..++..++..+-. +.......+.||.+-+
T Consensus 826 ~s~~~a~r~~~ar~i~~~~k~~~--------~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Ll 897 (1549)
T KOG0392|consen 826 RSIHIAVRYAAARCIGTMFKSAT--------RETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLL 897 (1549)
T ss_pred ccchHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceee
Confidence 99999999999999999987543 45567777888888887666666655555444 4445567888999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Q 006912 522 LQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (626)
Q Consensus 522 ~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~ 552 (626)
++-++..+...++.++..+-++++.++-..+
T Consensus 898 v~pllr~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 898 VVPLLRRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcccc
Confidence 9999999999888888898899988876554
No 172
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.91 E-value=0.083 Score=58.06 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=118.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhh-----hhC-----CcHHHHHHHHHHHHHHHhhcCcCchHH
Q 006912 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPC-----LGA-----ADRHIRSTVGTIVSVVVQLGGIAGWLE 131 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~-----l~~-----~~~~vr~~~~~~l~~i~~~~~~~~~~~ 131 (626)
+..=++|+-+++.++..+..+...++-+..+.+.-.++.. +++ -...||.+.+++++...+........+
T Consensus 88 ~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~~~~ 167 (1549)
T KOG0392|consen 88 EPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESLIKE 167 (1549)
T ss_pred CchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHhhHH
Confidence 5566899999999999999988887766555554444432 232 134799999999999999876677788
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhcc
Q 006912 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (626)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (626)
.+..+.+.+..++|++|++++..+.+.+....+.+ ....+.+++.+.+++.|.+.+|+..|...+..+.+..
T Consensus 168 ~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l--------~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 168 TLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLL--------FQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred HHHHHHHHHcCcchhheechHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHH
Confidence 88899999988899999999999987766333222 1345788889999999999999999999888777655
Q ss_pred chHHHHhHHHHHHHHHH
Q 006912 212 PSALFVSMDQYLQGLFL 228 (626)
Q Consensus 212 ~~~~~~~~~~~l~~l~~ 228 (626)
+......+..++..++.
T Consensus 240 v~l~~~~i~~lv~~l~~ 256 (1549)
T KOG0392|consen 240 VKLMVQKIAKLVHTLWS 256 (1549)
T ss_pred HhhhHhHHHHHHHHHHH
Confidence 43333444444444444
No 173
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.89 E-value=0.016 Score=59.71 Aligned_cols=255 Identities=15% Similarity=0.154 Sum_probs=162.7
Q ss_pred hcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHH
Q 006912 188 FFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYM 267 (626)
Q Consensus 188 ~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~ 267 (626)
.+.-.+..-|..-..-|...++..|+.+... .+++.++..+.-.+ -....+.-+..+...... .+|-..+++.+
T Consensus 262 el~lks~~eK~~Ff~~L~~~l~~~pe~i~~~--kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~--~eyq~~i~p~l 335 (690)
T KOG1243|consen 262 ELRLKSVEEKQKFFSGLIDRLDNFPEEIIAS--KVLPILLAALEFGD--AASDFLTPLFKLGKDLDE--EEYQVRIIPVL 335 (690)
T ss_pred hcccCcHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHhhccc--cchhhhhHHHHhhhhccc--cccccchhhhH
Confidence 3344455555555555555555555554432 23455555433222 111111122222211111 12556788889
Q ss_pred HhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCccccccc
Q 006912 268 LQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSR 347 (626)
Q Consensus 268 ~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~ 347 (626)
++.+...|..+|..-++.+-.+.++-.. + ..-.+++|.+..-+.++.
T Consensus 336 ~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~-~---~~~d~I~phv~~G~~DTn----------------------------- 382 (690)
T KOG1243|consen 336 LKLFKSPDRQIRLLLLQYIEKYIDHLTK-Q---ILNDQIFPHVALGFLDTN----------------------------- 382 (690)
T ss_pred HHHhcCcchHHHHHHHHhHHHHhhhcCH-H---hhcchhHHHHHhhcccCC-----------------------------
Confidence 9999999999999888887777765211 1 122355566544443322
Q ss_pred CCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcc-hHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccc
Q 006912 348 LHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE-ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG 426 (626)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~ 426 (626)
-++|.....++..++..++.. .-..++.++...-.+.+ ...|--.-.|+|.++......
T Consensus 383 -----------------~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~---~~irtntticlgki~~~l~~~ 442 (690)
T KOG1243|consen 383 -----------------ATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH---GGIRTNTTICLGKIAPHLAAS 442 (690)
T ss_pred -----------------HHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc---Ccccccceeeecccccccchh
Confidence 157888899999999988875 34577777776666666 788888888999888876433
Q ss_pred hhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 006912 427 LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (626)
Q Consensus 427 ~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l 506 (626)
.+..+ +.......++|+-+.-|.++.+++...++++. ....-.+++|.+.....|++..||..|-.++..+
T Consensus 443 ~R~~v--L~~aftralkdpf~paR~a~v~~l~at~~~~~-------~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 443 VRKRV--LASAFTRALKDPFVPARKAGVLALAATQEYFD-------QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hhccc--cchhhhhhhcCCCCCchhhhhHHHhhcccccc-------hhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 22111 23344457889999999999999888887764 4566678888888888889999999999999988
Q ss_pred HHHh
Q 006912 507 EEEA 510 (626)
Q Consensus 507 ~~~~ 510 (626)
....
T Consensus 514 l~kl 517 (690)
T KOG1243|consen 514 LEKL 517 (690)
T ss_pred Hhhh
Confidence 7655
No 174
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=0.42 Score=49.62 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=80.0
Q ss_pred ChHH-HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc
Q 006912 48 DFNN-YLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126 (626)
Q Consensus 48 ~~~~-~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~ 126 (626)
+++. .+.++|...+..+..+|+-.++++...+ +.-..++++..+.+...+...+.+..+.||..|..++..+-... .
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~-d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~-~ 158 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLS-DENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP-K 158 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHh-ccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC-C
Confidence 4555 4556776555777899999988887554 34456899999999999999999999999999988888776432 2
Q ss_pred CchHHHHHHHHHHhc-cCChhHHhHHHHHHH
Q 006912 127 AGWLELLQALVTCLD-SNDINHMEGAMDALS 156 (626)
Q Consensus 127 ~~~~~ll~~l~~~l~-~~~~~~r~~~l~~l~ 156 (626)
+.--.+.+.+...++ ++++.+|.+++..+.
T Consensus 159 dee~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 159 DEECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred CCcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 333345666666665 578899999987764
No 175
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.80 E-value=0.032 Score=48.56 Aligned_cols=146 Identities=18% Similarity=0.183 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHhh-cC---cCchHHHHHHH------------HHHhccCChhHHhHHHHHHHHHhhhchhccc----
Q 006912 108 HIRSTVGTIVSVVVQL-GG---IAGWLELLQAL------------VTCLDSNDINHMEGAMDALSKICEDIPQVLD---- 167 (626)
Q Consensus 108 ~vr~~~~~~l~~i~~~-~~---~~~~~~ll~~l------------~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~---- 167 (626)
.+|..+..++..+++. ++ .++|+.++|.- .-.+.|+++++|.+|+.++..+.+.....+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3799999999999988 43 47899998775 2234678899999999999999988755431
Q ss_pred cCCC-CCcc-------chhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHhccchH-H-HHhHHHHHHHHHHhcCCCCHH
Q 006912 168 SDVP-GLAE-------CPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSA-L-FVSMDQYLQGLFLLSNDPSAE 236 (626)
Q Consensus 168 ~~~~-~~~~-------~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~-~-~~~~~~~l~~l~~~~~~~~~~ 236 (626)
.+.+ +-|. ..+.++-..+...++. .+..+-...+||+..+++..|-. + .+.+..++..+...+.+.|.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1101 1121 1123333344555555 46678889999999999887622 2 233445566677777778889
Q ss_pred HHHHHHHHHHHHHhhCc
Q 006912 237 VRKLVCAAFNLLIEVRP 253 (626)
Q Consensus 237 ~~~~~~~~l~~l~~~~~ 253 (626)
++..++.++..++...+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999988876543
No 176
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.79 E-value=0.53 Score=45.10 Aligned_cols=165 Identities=16% Similarity=0.156 Sum_probs=114.8
Q ss_pred cHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHH
Q 006912 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (626)
Q Consensus 106 ~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l 185 (626)
++.-|+..+.+-..+...+....|.+++..|.+..+. |. ...+. ...+ ..-..+...+
T Consensus 2 d~k~kky~~~v~k~L~~Fe~~~EWAD~is~L~kL~k~------------lq---~~~~~--~~~I-----P~k~~v~krL 59 (307)
T PF04118_consen 2 DSKYKKYNAEVEKALKSFESSSEWADYISFLGKLLKA------------LQ---NSNNQ--FPYI-----PHKLQVSKRL 59 (307)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH------------Hh---ccCCC--Ccee-----CcHHHHHHHH
Confidence 3445666666666666666678999988777664421 11 00000 0011 1124556677
Q ss_pred HHhcCCCC-hHHHHHHHHHHHHHHhccc-hHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHH
Q 006912 186 LQFFQSPH-TSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (626)
Q Consensus 186 ~~~l~~~~-~~vr~~al~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l 263 (626)
.++|+-.- ..|-..|+++...+.+.++ +.+...+.-+.++++.++...+..+|...+..+....-..+..+.+.++.+
T Consensus 60 aqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~l 139 (307)
T PF04118_consen 60 AQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGL 139 (307)
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 77777643 4799999999999998775 556777878899999999888888998888888777666666778888888
Q ss_pred HHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 264 FEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
+..++.++.++..++...++..+..+...
T Consensus 140 i~slLpGLede~sE~~~~~~~ll~~l~~~ 168 (307)
T PF04118_consen 140 ILSLLPGLEDEGSEFFDRTLKLLDKLKEA 168 (307)
T ss_pred HHHhccccccCCchHHHHHHHHHHHHHHh
Confidence 88888888877777777777777776554
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.74 E-value=0.094 Score=56.54 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHHHccCccchhh-hHHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYP-HLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~-~l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 483 (626)
++.|.-+.+.|..+..+.+-.-.. .-..++...+..++| ++|.+|.=+|-+||++=+.+... ...-.-...-..
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~A----rw~G~r~~Ahek 646 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEA----RWSGRRDNAHEK 646 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchh----hhccccccHHHH
Confidence 678999999999999887532222 223467777888888 47999999999999998766543 111222334566
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHh
Q 006912 484 LLKRILDTNKRVQEAACSAFATLEEEA 510 (626)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (626)
++..+.|+.|.||.+|.-||+.++...
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 777888999999999999999999864
No 178
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=1 Score=46.92 Aligned_cols=148 Identities=18% Similarity=0.127 Sum_probs=98.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhC-cc----chhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchh
Q 006912 224 QGLFLLSNDPSAEVRKLVCAAFNLLIEVR-PS----FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHEN 298 (626)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~----~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~ 298 (626)
+.++..++.++.+||..|...+..+.-.. |+ .....++.-+..+...+.|+-++||..|+.-+..+... .+..
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~--fWe~ 254 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSK--FWEM 254 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH--HHHH
Confidence 56777888999999999999888776532 22 23344555666788889999999999998776666554 4554
Q ss_pred HHh-hhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHH
Q 006912 299 LKE-FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV 377 (626)
Q Consensus 299 ~~~-~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~ 377 (626)
+++ .+..++.-++.-+.. +....+|-+...++..
T Consensus 255 iP~~i~~~ll~kI~d~~a~---------------------------------------------dt~s~VR~svf~gl~~ 289 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAF---------------------------------------------DTSSDVRCSVFKGLPM 289 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhh---------------------------------------------ccchheehhHhcCcHH
Confidence 443 112222221111100 0011467777788877
Q ss_pred HHhhcCc-chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHc
Q 006912 378 LSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (626)
Q Consensus 378 l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~ 421 (626)
+...--. ..+..++|.+...+.+.. -++|.|++..+..+-.
T Consensus 290 ~l~np~sh~~le~~Lpal~~~l~D~s---e~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 290 ILDNPLSHPLLEQLLPALRYSLHDNS---EKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHcCccchhHHHHHHHhcchhhhccc---hhHHHHHHHHHHHHHh
Confidence 7655433 677888898888888887 8999999988877644
No 179
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.66 E-value=0.86 Score=45.80 Aligned_cols=194 Identities=14% Similarity=0.097 Sum_probs=112.3
Q ss_pred CChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh---hccCChh--HHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHH
Q 006912 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA---YKSMSPS--NQQYIKSELLPCLGAADRHIRSTVGTIVSVVV 121 (626)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~---~~~l~~~--~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~ 121 (626)
|.+...+++++.. ...+.+.++...++-..+... +..+.+. .....-..++..|..++..+...++.+++.++
T Consensus 52 ~~y~~~~l~ll~~--~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 52 GQYVKTFVNLLSQ--IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred HHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 6677888888875 777888888888877666431 1111000 00112234555677788899999999999998
Q ss_pred hhcCcC----chHHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCC--Ch
Q 006912 122 QLGGIA----GWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HT 194 (626)
Q Consensus 122 ~~~~~~----~~~~ll~~l~~~l~~~-~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~ 194 (626)
...... ..+.+++.+...+.++ +.+.+..++.++..+...-.... .|. -...++.+...++.. +.
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~------~f~--~~~~v~~L~~~L~~~~~~~ 201 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRF------AFV--LADGVPTLVKLLSNATLGF 201 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHH------HHH--HccCHHHHHHHHhhccccH
Confidence 654322 2233455666666654 45677788889888876543211 000 022455666666542 33
Q ss_pred HHHHHHHHHHHHHHhccchHHHHhH--HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhC
Q 006912 195 SLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVR 252 (626)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~ 252 (626)
.+...++-|+-.+ ++.++ ..+.+ .++++.+...++. +.+.+-.-++.+|..++...
T Consensus 202 Ql~Y~~ll~lWlL-SF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 202 QLQYQSIFCIWLL-TFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred HHHHHHHHHHHHH-hccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence 5556666555443 23222 22222 2567777776653 34556666777777777643
No 180
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=2.1 Score=50.03 Aligned_cols=238 Identities=11% Similarity=0.092 Sum_probs=132.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh---cCCChHHHHHHHH-hhcCCCCHHHHHHHHHHHHHHHHHhh
Q 006912 8 QPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYS---QFPDFNNYLAFIL-ARAEGKSVEIRQAAGLLLKNNLRTAY 83 (626)
Q Consensus 8 ~~~~~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~---~~p~~~~~l~~il-~~~~~~~~~~r~~a~~~l~~~i~~~~ 83 (626)
+|+.-....+....+.+.++++. .|=.+.+++.++. .++-|+..+.+.+ .+.++-.+.++...-.+....+-++-
T Consensus 869 g~e~v~~~~~~l~~~sl~~~~p~-~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyv 947 (2067)
T KOG1822|consen 869 GPEEVRSSALTLIVNSLINPNPK-LRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYV 947 (2067)
T ss_pred CHHHHHHHHHHHHhhhhccCChH-HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc
Confidence 33344445566777777889999 9988888888754 3555655544432 22235555555566666666665554
Q ss_pred ccCChhH-HHHHHHhHhhhhhCC-cHHHHHHHHHHHHHHHhhcCcCchHHHH---HHHHHHhcc-CC--hhHHhHHHHHH
Q 006912 84 KSMSPSN-QQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELL---QALVTCLDS-ND--INHMEGAMDAL 155 (626)
Q Consensus 84 ~~l~~~~-~~~i~~~L~~~l~~~-~~~vr~~~~~~l~~i~~~~~~~~~~~ll---~~l~~~l~~-~~--~~~r~~~l~~l 155 (626)
..+.+++ ...=...++..-+|+ ++.|+.-..+++..++....+-.|.-+= ..+..++-+ +. ..++...-+++
T Consensus 948 gs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~ 1027 (2067)
T KOG1822|consen 948 GSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCF 1027 (2067)
T ss_pred cCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhcccc
Confidence 4444333 333233444444554 5689998888999888776565563332 222333322 21 23444444444
Q ss_pred H------HHhhhchhccccCCCCCccchhhhhHH----HHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHH
Q 006912 156 S------KICEDIPQVLDSDVPGLAECPINIFLP----RLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG 225 (626)
Q Consensus 156 ~------~l~~~~~~~~~~~~~~~~~~~~~~il~----~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~ 225 (626)
+ .+....++++.+... +.....+-. ...-.+.++++.+..++++|+-++--+.|... ++..++..
T Consensus 1028 ~~~~~~~alittlgpeL~~N~~---~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~--n~~~lV~~ 1102 (2067)
T KOG1822|consen 1028 NGDDDEDALITTLGPELGPNGD---KDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHV--NLDSLVLQ 1102 (2067)
T ss_pred ccchhHHHHHHhcccccCCCCc---ccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhc--cHHHHHHH
Confidence 4 566666555543211 001111111 12222345688899999999998877766532 34455666
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhh
Q 006912 226 LFLLSNDPSAEVRKLVCAAFNLLIEV 251 (626)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (626)
+...+...---.|...+.++..++..
T Consensus 1103 L~~~l~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1103 LCSLLSSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred HHHHhcchhhhhhhhHHhhhhHHhHH
Confidence 66655544444555566666555543
No 181
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.62 E-value=0.43 Score=48.31 Aligned_cols=231 Identities=17% Similarity=0.194 Sum_probs=140.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHh-cCCChHH----HHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHhhccCC
Q 006912 15 NEICRLLEQQISPSSTADKSQIWQQLQQYS-QFPDFNN----YLAFILAR--AEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (626)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~-~~p~~~~----~l~~il~~--~~~~~~~~r~~a~~~l~~~i~~~~~~l~ 87 (626)
.-+.+++....|+|+. .|......|..+. +.++.-. .+.+++.. .++....-=.-..-++...+.+.-..+.
T Consensus 133 ~fi~~Ll~l~~S~D~r-ER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPR-ERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHHTTTSSTHH-HHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 3467788888899999 9999999998854 4555322 23333321 0011111111112223333332222467
Q ss_pred hhHHHHHHHhHhhhhhCC-cHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhcc
Q 006912 88 PSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (626)
Q Consensus 88 ~~~~~~i~~~L~~~l~~~-~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~ 166 (626)
++.+..+...++++.+.. -......+..++..++..+ +..-..++..+.+..--.++.-...-+.-+..+++..+...
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~ 290 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEE 290 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHH
Confidence 788888888999988765 3455778888999999876 34446667777777665665555567777777777766431
Q ss_pred ccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHH--HHhccchHHHHhHHHHHHHHHHhc----C-CCCHHHHH
Q 006912 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ--FIMLMPSALFVSMDQYLQGLFLLS----N-DPSAEVRK 239 (626)
Q Consensus 167 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~--~~~~~~~~~~~~~~~~l~~l~~~~----~-~~~~~~~~ 239 (626)
- ......++..+..++++++..|...|+..+.. ++... ..+...+++.++..+ . +=+..+|.
T Consensus 291 f-------~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li----~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~ 359 (409)
T PF01603_consen 291 F-------QKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI----SQNSRVILPIIFPALYRNSKNHWNQTVRN 359 (409)
T ss_dssp H-------HHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH----HCTHHHHHHHHHHHHSSTTSS-SSTTHHH
T ss_pred H-------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH----HhChHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 1 24467778888889999999999999866532 22221 222234455555543 2 22567999
Q ss_pred HHHHHHHHHHhhCccchhh
Q 006912 240 LVCAAFNLLIEVRPSFLEP 258 (626)
Q Consensus 240 ~~~~~l~~l~~~~~~~~~~ 258 (626)
.+..++..+.+..+..+..
T Consensus 360 ~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 360 LAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHH
Confidence 9999999999988887765
No 182
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.61 E-value=0.038 Score=57.08 Aligned_cols=151 Identities=13% Similarity=0.077 Sum_probs=102.6
Q ss_pred chHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHH
Q 006912 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (626)
Q Consensus 128 ~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~ 207 (626)
.-..++|.+.+++.+.+..+|..-+.-+-..++.+.... .-++++|.+..++.|+++.+|..+++++..+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~----------~~d~I~phv~~G~~DTn~~Lre~Tlksm~~L 396 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQI----------LNDQIFPHVALGFLDTNATLREQTLKSMAVL 396 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHh----------hcchhHHHHHhhcccCCHHHHHHHHHHHHHH
Confidence 335689999999999998888776666666555555432 2378999999999999999999999999999
Q ss_pred HhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHH
Q 006912 208 IMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (626)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~ 287 (626)
+..+... ..-..+++.+...-.|....+|....-|+.++.......... ..+.....+.+.|.-...|.++...+.
T Consensus 397 a~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~--~vL~~aftralkdpf~paR~a~v~~l~ 472 (690)
T KOG1243|consen 397 APKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRK--RVLASAFTRALKDPFVPARKAGVLALA 472 (690)
T ss_pred Hhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhc--cccchhhhhhhcCCCCCchhhhhHHHh
Confidence 9876544 122356777777766777778887777777666542211111 012222333456665556777776665
Q ss_pred Hhhcc
Q 006912 288 SYFEA 292 (626)
Q Consensus 288 ~l~~~ 292 (626)
...+.
T Consensus 473 at~~~ 477 (690)
T KOG1243|consen 473 ATQEY 477 (690)
T ss_pred hcccc
Confidence 55554
No 183
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.52 E-value=0.62 Score=42.44 Aligned_cols=89 Identities=21% Similarity=0.270 Sum_probs=64.1
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCC--CchHHHHHHHHHHHHHHHHHhhhcCC
Q 006912 393 VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD--KFPLIRSISCWTLSRFSKFIVQDIGH 470 (626)
Q Consensus 393 ~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (626)
.+.+.+..++ ..-|..+.+++|++-... .+|.+...|.| .+|.||..|+.+||.++.
T Consensus 191 al~~~l~~~S---alfrhEvAfVfGQl~s~~----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-------- 249 (289)
T KOG0567|consen 191 ALIDGLADDS---ALFRHEVAFVFGQLQSPA----------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD-------- 249 (289)
T ss_pred HHHHhcccch---HHHHHHHHHHHhhccchh----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------
Confidence 3444455555 788888888888886633 35566666654 689999999999998875
Q ss_pred CchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 006912 471 QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (626)
Q Consensus 471 ~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (626)
+..++.|.+.++|+.+.|+..+..+|...--.
T Consensus 250 -------e~~~~vL~e~~~D~~~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 250 -------EDCVEVLKEYLGDEERVVRESCEVALDMLEYE 281 (289)
T ss_pred -------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 23456677778888899999888888766543
No 184
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.51 E-value=0.023 Score=48.76 Aligned_cols=147 Identities=13% Similarity=0.137 Sum_probs=83.1
Q ss_pred HHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 006912 431 LSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (626)
Q Consensus 431 l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (626)
.+++++.++..++. .++.+|..+++++|.++-.-+ |....+. ....+.........+.........
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP----------~~~k~~~---~~~~~~~~~~~~~~~~~~~l~~~~ 74 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDP----------YKHKSIQ---KSLDSKSSENSNDESTDISLPMMG 74 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc----------HHHhccc---ccCCccccccccccchhhHHhhcc
Confidence 35678888887764 469999999999999885322 2222111 111110000000001111111111
Q ss_pred hcccccch-HHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCCCCccchHHH
Q 006912 510 AAEELAPR-LEIILQHLMMAFGKYQRRN-LRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLE 587 (626)
Q Consensus 510 ~~~~~~~~-l~~i~~~l~~~l~~~~~~~-~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 587 (626)
.......| ....+..|++.+.+..... ...++.++-.+.+..|.... +|+++++|.++..++... +......+.
T Consensus 75 ~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv--~~L~~viP~~l~~i~~~~--~~~~e~~~~ 150 (160)
T PF11865_consen 75 ISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCV--PYLPQVIPIFLRVIRTCP--DSLREFYFQ 150 (160)
T ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCch--hHHHHHhHHHHHHHHhCC--HHHHHHHHH
Confidence 11223333 3456677788777765443 34788999999888888875 799999999999988653 222224444
Q ss_pred HHHHHHH
Q 006912 588 CFTSIAQ 594 (626)
Q Consensus 588 ~~~~l~~ 594 (626)
-++.+..
T Consensus 151 qL~~lv~ 157 (160)
T PF11865_consen 151 QLADLVS 157 (160)
T ss_pred HHHHHHH
Confidence 4555444
No 185
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=96.51 E-value=0.4 Score=50.11 Aligned_cols=255 Identities=15% Similarity=0.118 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-HhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhH
Q 006912 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQ-YSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN 90 (626)
Q Consensus 12 ~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~-~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~ 90 (626)
+...++.+.|...++.+.. +|-.....+.. +.++|.. ..|-. |..- .+.++.++. .+++. +.+.|+.++.-.
T Consensus 236 ~~p~el~~~l~k~l~~~~~-~rp~~~~l~~~~ff~D~~~-~aLrf-LD~l-~~kdn~qKs--~Flk~-Ls~~ip~fp~rv 308 (700)
T KOG2137|consen 236 NLPSELRESLKKLLNGDSA-VRPTLDLLLSIPFFSDPGL-KALRF-LDDL-PQKDNSQKS--SFLKG-LSKLIPTFPARV 308 (700)
T ss_pred cCcHHHHHHHHHHhcCCcc-cCcchhhhhcccccCCchh-hhhhh-cccc-cccCcHHHH--HHHHH-HHHhhccCCHHH
Confidence 3446788899999999999 88833333333 2334443 22222 2111 112233333 44554 667788877644
Q ss_pred H-HHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc-CchHHHHHHHHHHhccCC-hhHHhHHHHHHHHHhhhchhccc
Q 006912 91 Q-QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSND-INHMEGAMDALSKICEDIPQVLD 167 (626)
Q Consensus 91 ~-~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~-~~~~~ll~~l~~~l~~~~-~~~r~~~l~~l~~l~~~~~~~~~ 167 (626)
. ..+...|...|.+.. .+ -..--++-.|+..... ..-+.++|.|...+...+ .+....-++=+..+.+..+..
T Consensus 309 ~~~kiLP~L~~el~n~~-~v-p~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e-- 384 (700)
T KOG2137|consen 309 LFQKILPTLVAELVNTK-MV-PIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE-- 384 (700)
T ss_pred HHHhhhhHHHHHhcccc-cc-ccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH--
Confidence 3 345555555443221 00 1111123333333222 233667777777776432 222222222222233333322
Q ss_pred cCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHh-cCCCCHHHHHHHHHHHH
Q 006912 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLL-SNDPSAEVRKLVCAAFN 246 (626)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~l~ 246 (626)
.....++|.|...+++.+..++..+++.+..+.+.++-.+... .++|.+.++ +...+..++..++-|+.
T Consensus 385 --------~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~--~ilP~l~~l~~~tt~~~vkvn~L~c~~ 454 (700)
T KOG2137|consen 385 --------EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQ--AILPRLKNLAFKTTNLYVKVNVLPCLA 454 (700)
T ss_pred --------HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHH--HHHHHhhcchhcccchHHHHHHHHHHH
Confidence 3468899999999999999999999999999998876433221 346666664 34567789999999999
Q ss_pred HHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhh
Q 006912 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (626)
Q Consensus 247 ~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~ 290 (626)
.+++..... .+-+.+..+.++++..++.+....+.....+.
T Consensus 455 ~l~q~lD~~---~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 455 GLIQRLDKA---AVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred HHHHHHHHH---HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 998443321 12244455566777777777777666655543
No 186
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.51 E-value=1.4 Score=46.20 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=63.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhc----CCCh---HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChh
Q 006912 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ----FPDF---NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (626)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~~----~p~~---~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~ 89 (626)
|..+|..+.||+.. +|+...+.|+.+.+ +|+. +..|+..... .+.+.-+|.++.++++..+. .++.+
T Consensus 25 L~plLlkl~S~~~~-VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~-~~~s~~vrnfsliyi~~g~~----Rl~~~ 98 (501)
T PF13001_consen 25 LPPLLLKLASPHAS-VRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKE-PSDSSFVRNFSLIYIEMGFD----RLDDE 98 (501)
T ss_pred HHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhC-CCCchHHHHHHHHHHHHhhh----cCCHH
Confidence 44577777899989 99999999998642 4664 4566666653 24478999999999986654 58999
Q ss_pred HHHHHHHhHhhhhhC
Q 006912 90 NQQYIKSELLPCLGA 104 (626)
Q Consensus 90 ~~~~i~~~L~~~l~~ 104 (626)
.+..+...+++.+..
T Consensus 99 e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 99 ERRELLPSLLKGISK 113 (501)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999999974
No 187
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.51 E-value=0.61 Score=45.42 Aligned_cols=185 Identities=14% Similarity=0.194 Sum_probs=113.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhHH-------HHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcC---chHH
Q 006912 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ-------QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---GWLE 131 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~-------~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~---~~~~ 131 (626)
.-+-+.|.-++.++.+.++..-..-..... ..+...|+.+.. .+.+--.++.++...++.+.-. -..+
T Consensus 87 ~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e~l~~~iL~~~ 164 (335)
T PF08569_consen 87 KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHESLAKIILYSE 164 (335)
T ss_dssp GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSHHHHHHHHTSG
T ss_pred hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhHHHHHHHhCcH
Confidence 557778888888887777553322110122 233333444433 3344455566666665542100 0011
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhcc
Q 006912 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (626)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (626)
.+-.+.+.++.++.++--.|...+..+.......... ++....+.++..+-+++.+++.-.|..+++.|+.++..-
T Consensus 165 ~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~----fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr 240 (335)
T PF08569_consen 165 CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAE----FLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDR 240 (335)
T ss_dssp GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHH----HHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHH----HHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHch
Confidence 2334667788888888888888888888775543221 112446777788888899999999999999999998653
Q ss_pred ch--HHHHhH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhC
Q 006912 212 PS--ALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (626)
Q Consensus 212 ~~--~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 252 (626)
+. .+..++ +.-+..+..++.|++..++-+|+.++-.++.+.
T Consensus 241 ~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 241 SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 32 112222 255788889999999999999999998888763
No 188
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.47 E-value=1.2 Score=45.41 Aligned_cols=105 Identities=17% Similarity=0.069 Sum_probs=76.2
Q ss_pred chhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccc
Q 006912 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (626)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 255 (626)
..+.+++-.++.+..+++..||..++..+..+.....+........++..+...+-|.++.||..|..+|+.+-+.....
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 45677888888899999999999999999998887665444445556777777778889999999999999887643321
Q ss_pred hhhhHHHHHHHHHhh-ccCCChHHHHHHHh
Q 006912 256 LEPHLRNLFEYMLQV-NKDTDDDVALEACE 284 (626)
Q Consensus 256 ~~~~l~~l~~~~~~~-~~~~~~~v~~~a~~ 284 (626)
= . .+...+... -.|+.++||..|+-
T Consensus 167 e-n---~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 167 E-N---RIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred H-H---HHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1 1 122222223 24678899998873
No 189
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=96.46 E-value=0.038 Score=47.23 Aligned_cols=117 Identities=20% Similarity=0.237 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHhhhcC------------------CCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhc
Q 006912 428 YPHLSEIVAFLIPLLD------------------DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (626)
Q Consensus 428 ~~~l~~l~~~l~~~l~------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~ 489 (626)
.++++.++|.+..... |+--.+|.+|..++-.+.+.+.. .-.+..++..+..++.
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~-------~~~~~~~~~~v~~GL~ 76 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLS-------RIDISEFLDRVEAGLK 76 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCS-------SS-HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHhhcC
Confidence 5777888888876554 33468999999999988876542 2236677888999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhh-------h-----HHHHHHHHHHHHHHHHHhc
Q 006912 490 DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY-------Q-----RRNLRIVYDAIGTLADAVG 552 (626)
Q Consensus 490 d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~-------~-----~~~~~~~~~~l~~i~~~~~ 552 (626)
| ++.|+.-+...+.+++...+..+.+.++.+++.+...+... + .+..+.+++++..+-..++
T Consensus 77 D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 77 D-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp S--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred C-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9 99999999999999998887777777777777777777432 1 1234567777777755554
No 190
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.049 Score=54.52 Aligned_cols=122 Identities=19% Similarity=0.119 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcC-CCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l 484 (626)
-.+|.||+.++|-++-.-. ++++..++.|. +-|+.||...+.++|-.|..-+ . ...+..+
T Consensus 566 DDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G--------~---~~a~diL 626 (926)
T COG5116 566 DDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTG--------D---KVATDIL 626 (926)
T ss_pred hHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc--------c---HHHHHHH
Confidence 5677777776665543221 23445555554 4468888888888887775332 1 2223334
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 006912 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (626)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~ 546 (626)
-..+.|++..||..|+.+++.+.-.|.+.+.|....|.+.+.+.+.+.+.+.....-.+++.
T Consensus 627 ~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~glaklGA~laq 688 (926)
T COG5116 627 EALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHESGLAKLGAVLAQ 688 (926)
T ss_pred HHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHhHHHHHHHHHHh
Confidence 44457889999999999999999999999999999999999999887766555433334433
No 191
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.45 E-value=0.028 Score=44.43 Aligned_cols=98 Identities=12% Similarity=0.082 Sum_probs=74.8
Q ss_pred hhhhHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 006912 473 GREQFEKVLMGLLKRILD----TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (626)
Q Consensus 473 ~~~~~~~ll~~l~~~l~d----~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~ 548 (626)
.++++-.++..+-..++| .+..-+..+..+++.+++-+++.+.++.+.++..|...+..+ +.+..+++|-..++
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi 82 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFI 82 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHH
Confidence 456677777777777776 356779999999999999888888888888888877777654 55668999999999
Q ss_pred HHhccccCChhhhhhhhHHHHHHHh
Q 006912 549 DAVGFELNQPVYLDILMPPLIAKWQ 573 (626)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~~l~~~~~ 573 (626)
..++.+-.. +++++++..++..|.
T Consensus 83 ~~L~~~~l~-~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 83 KTLDEEDLG-PLLDQIFAILLPLWD 106 (107)
T ss_pred HHCCHHHHH-HHHHHHHHHHHHhcc
Confidence 999764433 477777766666554
No 192
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.44 E-value=0.69 Score=42.15 Aligned_cols=115 Identities=22% Similarity=0.229 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~ 485 (626)
-..|+.+.+.+..+.. +..+..+...+.+++...|..++.++|++-.-. -+|.+.
T Consensus 170 l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~---------------ai~~L~ 224 (289)
T KOG0567|consen 170 LFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSPA---------------AIPSLI 224 (289)
T ss_pred HHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccchh---------------hhHHHH
Confidence 4567788887776644 234667888999999999999999999987522 245566
Q ss_pred HHhcc--CCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc
Q 006912 486 KRILD--TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (626)
Q Consensus 486 ~~l~d--~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~ 555 (626)
+.|.| .+|-||..|+.||+.+.. +..++.|...+++..+-+.+.+.-++...--..+++|
T Consensus 225 k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~~ 286 (289)
T KOG0567|consen 225 KVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKEF 286 (289)
T ss_pred HHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 66654 368899999999999875 3444555555666555566666666665554444444
No 193
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.40 E-value=0.064 Score=42.42 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=72.8
Q ss_pred HHHHhHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHh
Q 006912 214 ALFVSMDQYLQGLFLLSND----PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (626)
Q Consensus 214 ~~~~~~~~~l~~l~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l 289 (626)
.+.+++-.++..+-..+.| .....++.+++.+..+++..+..+....+++...+...+..+ +.+..|+++|..+
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~f 81 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHH
Confidence 3445555555555555554 456788999999999999888888888888887777666555 6899999999999
Q ss_pred hccCCcchhHHhhhhhhHHHHhhhc
Q 006912 290 FEAQLPHENLKEFLPRLVPVLLSNM 314 (626)
Q Consensus 290 ~~~~~~~~~~~~~l~~li~~l~~~l 314 (626)
.+. -..+.+.+.+++++..+++.+
T Consensus 82 i~~-L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 82 IKT-LDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHH-CCHHHHHHHHHHHHHHHHHhc
Confidence 886 244667788888877776643
No 194
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.35 E-value=0.19 Score=52.41 Aligned_cols=211 Identities=18% Similarity=0.191 Sum_probs=132.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhh--C---------CcHHHHHHHHHHHHHHHhhc-CcCch
Q 006912 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG--A---------ADRHIRSTVGTIVSVVVQLG-GIAGW 129 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~--~---------~~~~vr~~~~~~l~~i~~~~-~~~~~ 129 (626)
+....+...|-..||+.-.. |.. ..+...|+.++. . .+..+|.. ++..+.+.. .....
T Consensus 248 d~~~~V~~~ae~~LKr~~~~-~ed------~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~k---IL~~L~kS~~Aa~~~ 317 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVS-LED------PDLVDRLFDLYLGKGIPPENGRPPASPRLQEK---ILSLLSKSVIAATSF 317 (501)
T ss_pred CCcchHHHHHHHHHhhcCCC-CCC------HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHH---HHHHHHHhHHHHhCC
Confidence 66778888998999865433 432 234445555443 1 24556655 444444432 23455
Q ss_pred HHHHHHHHHHhccC--ChhHHhHHHHHH---HHHhhhchhccccCCCCCccchhhhhHHHHHHhcC--------CCChHH
Q 006912 130 LELLQALVTCLDSN--DINHMEGAMDAL---SKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ--------SPHTSL 196 (626)
Q Consensus 130 ~~ll~~l~~~l~~~--~~~~r~~~l~~l---~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--------~~~~~v 196 (626)
+..+..+...+.++ +.+.|..++..+ ...+..++..... ...+.++..+...++ ..+...
T Consensus 318 ~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~-------~l~~~i~~~g~p~~~~~~~~~~~~~~~~l 390 (501)
T PF13001_consen 318 PNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILK-------LLRPVILSQGWPLIQDSSSQSNSSEDIEL 390 (501)
T ss_pred ccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHH-------HHHHHHHhcCccccccccccCCCcccHHH
Confidence 77778888888777 667888888888 6666666553221 111222223333332 235689
Q ss_pred HHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchh-h--hHHHHHHHHH-hhcc
Q 006912 197 RKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE-P--HLRNLFEYML-QVNK 272 (626)
Q Consensus 197 r~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~--~l~~l~~~~~-~~~~ 272 (626)
|..+.++++.++...|..+.+.+ .++..++..+.++.+++|..+-++|..++..+...-. . ........+. ....
T Consensus 391 R~~aYe~lG~L~~~~p~l~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~ 469 (501)
T PF13001_consen 391 RSLAYETLGLLAKRAPSLFSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQ 469 (501)
T ss_pred HHHHHHHHHHHHccCcccccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhcc
Confidence 99999999999999887775554 5678888888888899999999999999887665433 1 1112222222 2334
Q ss_pred CCChHHHHHHHhHHHHhh
Q 006912 273 DTDDDVALEACEFWHSYF 290 (626)
Q Consensus 273 ~~~~~v~~~a~~~l~~l~ 290 (626)
+....+|..|+.+...+.
T Consensus 470 ~~~~~~R~~avk~an~~f 487 (501)
T PF13001_consen 470 SEVRSCRYAAVKYANACF 487 (501)
T ss_pred chhHHHHHHHHHHHHHhC
Confidence 556677888887766553
No 195
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=96.31 E-value=0.17 Score=49.69 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=95.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCc-cchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHH
Q 006912 222 YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (626)
Q Consensus 222 ~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 300 (626)
++..+.+.+.+.++..|..++..|. ...+ ..+-||+-.++.--+...-+.+-..-...+....++..++. -.+.
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~sL~---tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~--l~le 253 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQSLR---TDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN--LHLE 253 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhc---cCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC--CchH
Confidence 3444444444456666666655543 1111 22233333332222222112144455666777777877633 3567
Q ss_pred hhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh
Q 006912 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (626)
Q Consensus 301 ~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~ 380 (626)
+++.+++|.++.++....-. ... +...+|.+|..|+..+..+++
T Consensus 254 ~Ylh~Lip~vltclv~~~l~--------------------------------~~~----~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 254 PYLHQLIPSVLTCLVAKQLC--------------------------------SRP----PDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred HhHHHHHHHHHHHhhhHhhc--------------------------------CCC----CCchHHHHHHHHHHHHHHHHH
Confidence 89999999988876543210 000 023469999999999999999
Q ss_pred hcCc---chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHc
Q 006912 381 VFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (626)
Q Consensus 381 ~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~ 421 (626)
.++. .+.+.+...+.+.+.++. .....+++|+..++.++.
T Consensus 298 ~f~~~y~~l~~ri~~tl~k~l~d~~-~~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 298 KFSTSYNTLQPRITRTLLKALLDPK-KPLTTHYGAIVGLSALGP 340 (343)
T ss_pred HcCCCCCcHHHHHHHHHHHHHcCCC-CCcchhhHHHHHHHHhCc
Confidence 9975 566778878877777653 124559999999988864
No 196
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.27 E-value=0.53 Score=47.49 Aligned_cols=174 Identities=18% Similarity=0.336 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcc--------CCChHHHHHHHhHHHHhhcc
Q 006912 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK--------DTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 221 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~--------~~~~~v~~~a~~~l~~l~~~ 292 (626)
-++..+.+.+...++..|.+|++.|.. .+-++++++++...+. ..+-..-...+....++.++
T Consensus 207 lYy~~It~a~~g~~~~~r~eAL~sL~T---------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 207 LYYKEITEACTGSDEPLRQEALQSLET---------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcc---------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence 445556665555778888888877742 1223344444333321 12334445556666677766
Q ss_pred CCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHH
Q 006912 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (626)
Q Consensus 293 ~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~ 372 (626)
+ .-.+.+++..++|.++.++....- ..+| +.+.+|.+|..|+
T Consensus 278 p--~i~lepYlh~L~PSvlTCvVsk~l------------------~~~p------------------~~dnhwaLRDfAA 319 (576)
T KOG2549|consen 278 P--NIFLEPYLHQLVPSVLTCVVSKNL------------------CLRP------------------ELDNHWALRDFAA 319 (576)
T ss_pred C--ccchhhHHHHHhhHHHHhhhhhhc------------------cCCc------------------cccchHHHHHHHH
Confidence 3 335678999999988876643210 0000 1245799999999
Q ss_pred HHHHHHHhhcCc---chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccc-hhhhHHHHHHHHhhhc
Q 006912 373 AALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLL 442 (626)
Q Consensus 373 ~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~-~~~~l~~l~~~l~~~l 442 (626)
..+..+++.++. .+-+.+..++.+.+.++ ...|...++++..|..+....... +.+.+......+...+
T Consensus 320 ~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~-~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l 392 (576)
T KOG2549|consen 320 RLLAQICKNFSTLYNNLQPRITRTLSKALLDN-KKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVL 392 (576)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC-CCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhc
Confidence 999999999986 34567778888888775 133899999999999988754322 2345544444443333
No 197
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=96.25 E-value=1.3 Score=46.46 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhhcCc-chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH-HHHHHHHhhh-cCCC
Q 006912 369 KCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPL-LDDK 445 (626)
Q Consensus 369 ~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~l~~~-l~d~ 445 (626)
-.-.+-++.|.+..+. ++...++|.+...+++.+ ....+.++..+..+++.... +.+ ..++|.+-.. +...
T Consensus 368 l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~---~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt 441 (700)
T KOG2137|consen 368 LFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSD---VQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTT 441 (700)
T ss_pred hhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcc---hhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhccc
Confidence 3344555666666665 788899999999999998 99999999999999997752 222 2256766554 4578
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Q 006912 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (626)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (626)
+..|+..++.|++.+++.+.. ...-+.+..+.++.+..+|.+.........++.-..
T Consensus 442 ~~~vkvn~L~c~~~l~q~lD~--------~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~ 498 (700)
T KOG2137|consen 442 NLYVKVNVLPCLAGLIQRLDK--------AAVLDELLPILKCIKTRDPAIVMGFLRIYEALALII 498 (700)
T ss_pred chHHHHHHHHHHHHHHHHHHH--------HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhc
Confidence 999999999999999976642 233444555667777777888777777766665443
No 198
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.24 E-value=0.088 Score=50.33 Aligned_cols=145 Identities=12% Similarity=0.150 Sum_probs=100.6
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhcc---ccCCCCCccchhhhhHHHHHHhcC--------CCCh
Q 006912 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL---DSDVPGLAECPINIFLPRLLQFFQ--------SPHT 194 (626)
Q Consensus 126 ~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~---~~~~~~~~~~~~~~il~~l~~~l~--------~~~~ 194 (626)
...|+-++|.++..+.|.++.+|..|+.+|..+++.++... -.+ .....-+.+.+...+. +.+.
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~-----tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRR-----TGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH-----cChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 47899999999999999999999999999999999877543 111 1223444445555554 3456
Q ss_pred HHHHHHHHHHHHHHhccc---h-HHHHhHHHHH-HHHHHhcC----CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHH
Q 006912 195 SLRKLSLGSVNQFIMLMP---S-ALFVSMDQYL-QGLFLLSN----DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFE 265 (626)
Q Consensus 195 ~vr~~al~~l~~~~~~~~---~-~~~~~~~~~l-~~l~~~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~ 265 (626)
.+-..+..|+..++.... . .-...+..++ ..+++.+. -+.+.++...++.+..++...+-....|++.+++
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~ 268 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIP 268 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 677888888888865421 1 1112222222 33444322 2347888889999999999888888899999999
Q ss_pred HHHhhccCCC
Q 006912 266 YMLQVNKDTD 275 (626)
Q Consensus 266 ~~~~~~~~~~ 275 (626)
.+.+.+.+.+
T Consensus 269 ~l~~~l~npf 278 (282)
T PF10521_consen 269 VLSQILENPF 278 (282)
T ss_pred HHHHHhcCCC
Confidence 9888776643
No 199
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.10 E-value=1.9 Score=43.74 Aligned_cols=263 Identities=12% Similarity=0.081 Sum_probs=130.6
Q ss_pred hccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhH
Q 006912 140 LDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (626)
Q Consensus 140 l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 219 (626)
..++.|.+.......|..+++..+... ... ..-..++..++..+.++|++-|......+..+....+..-.-..
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~---~~~---~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir 172 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDP---AKK---YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIR 172 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--C---CTT---TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccH---HHH---HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 445567777778888888877755432 111 12257788899999999999999888888887654432211111
Q ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhCccchhhhHHHHH-HHHHhhccCCC-hHHHHHHHhHHHHhhccCCcc
Q 006912 220 DQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLF-EYMLQVNKDTD-DDVALEACEFWHSYFEAQLPH 296 (626)
Q Consensus 220 ~~~l~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~-~~~~~~~~~~~-~~v~~~a~~~l~~l~~~~~~~ 296 (626)
..+-..+.+.+.+ ....--..+++.++.++....-.++.....++ ..++-+.+... ......-..++..+++. ..
T Consensus 173 ~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k--dp 250 (409)
T PF01603_consen 173 KSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK--DP 250 (409)
T ss_dssp HHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---G
T ss_pred HHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh--Cc
Confidence 1223334443332 23344567778888888775544433222222 33333333222 11223333444444443 22
Q ss_pred hhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHH
Q 006912 297 ENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALD 376 (626)
Q Consensus 297 ~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~ 376 (626)
... ..++..+++....+.. .-......-+.
T Consensus 251 ~l~----~~~i~~llk~WP~t~s----------------------------------------------~Kev~FL~el~ 280 (409)
T PF01603_consen 251 SLA----EPVIKGLLKHWPKTNS----------------------------------------------QKEVLFLNELE 280 (409)
T ss_dssp GGH----HHHHHHHHHHS-SS-H----------------------------------------------HHHHHHHHHHH
T ss_pred hhH----HHHHHHHHHhCCCCCc----------------------------------------------hhHHHHHHHHH
Confidence 222 2233333332221110 01122333444
Q ss_pred HHHhhcCc----chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHH--HHccCccchhhhHHHHHHHHhhhc-CCCchHH
Q 006912 377 VLSNVFGD----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGA--IAEGCIKGLYPHLSEIVAFLIPLL-DDKFPLI 449 (626)
Q Consensus 377 ~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~--l~~~~~~~~~~~l~~l~~~l~~~l-~d~~~~v 449 (626)
.+....+. .+...+...+...+++++ .++-+.|+..+.. +..-..+.....++.++|.+.... .+-+..|
T Consensus 281 ~il~~~~~~~f~~i~~~lf~~la~ci~S~h---~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~V 357 (409)
T PF01603_consen 281 EILEVLPPEEFQKIMVPLFKRLAKCISSPH---FQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTV 357 (409)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHHHHTSSS---HHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44444443 334567777888888988 9998888865432 111111111223344455554433 3567899
Q ss_pred HHHHHHHHHHHHHH
Q 006912 450 RSISCWTLSRFSKF 463 (626)
Q Consensus 450 r~~a~~~l~~l~~~ 463 (626)
|..|..++..+.+.
T Consensus 358 r~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 358 RNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99998888777763
No 200
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.08 E-value=1.9 Score=43.49 Aligned_cols=185 Identities=10% Similarity=0.054 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-HhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCCh
Q 006912 10 QEQGFNEICRLLEQQISPSSTADKSQIWQQLQQ-YSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (626)
Q Consensus 10 ~~~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~-~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~ 88 (626)
.+++.+.+..++..+++.++. ..+.+.+ ...+|+.+..++.+|. ..+..+...|+.++...+...-.....
T Consensus 67 ~~d~vqyvL~Li~dll~~~~~-----~~~~f~~~~~~~~~~~~~fl~lL~---~~d~~i~~~a~~iLt~l~~~~~~~~~~ 138 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQEDDT-----RVKLFHDDALLKKKTWEPFFNLLN---RQDQFIVHMSFSILAKLACFGLAKMEG 138 (429)
T ss_pred cHHHHHHHHHHHHHHHHhchH-----HHHHHHHHhhccccchHHHHHHHc---CCchhHHHHHHHHHHHHHhcCccccch
Confidence 344555555566655555443 2222222 2234665555666664 457788888888888776532223344
Q ss_pred hHHHHHHHhHhhhhhCC-cHHHHHHHHHHHHHHHhhcC-c-Cch-HHHHHHHHHHhccC--ChhHHhHHHHHHHHHhhhc
Q 006912 89 SNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGG-I-AGW-LELLQALVTCLDSN--DINHMEGAMDALSKICEDI 162 (626)
Q Consensus 89 ~~~~~i~~~L~~~l~~~-~~~vr~~~~~~l~~i~~~~~-~-~~~-~~ll~~l~~~l~~~--~~~~r~~~l~~l~~l~~~~ 162 (626)
.....+.+.+...+..+ +...+..+..++..+.+... . ..| .+.++.|...++.. +.+....++.|+=-+.-.
T Consensus 139 ~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~- 217 (429)
T cd00256 139 SDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN- 217 (429)
T ss_pred hHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-
Confidence 44455666666666543 35556667788888876531 1 112 22455666666542 233444444444322211
Q ss_pred hhccccCCCCCccchhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHhc
Q 006912 163 PQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIML 210 (626)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~ 210 (626)
++ .... ..-..+++.+.+.++. +.++|-+-++.+|.+++..
T Consensus 218 ~~-~~~~------~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 218 PH-AAEV------LKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HH-HHHh------hccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 11 1111 1125688888888876 4567777788888888764
No 201
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.07 E-value=0.11 Score=39.55 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=58.2
Q ss_pred HHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHh
Q 006912 392 PVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (626)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (626)
......++++. +.+|..++..++.+...-. ......+.++..++..++|+++.|--+|+.+++.++...+
T Consensus 6 ~~al~~L~dp~---~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 6 QEALSDLNDPL---PPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHccCCC---cchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 34556677887 8899999999999988654 2345677889999999999999999999999999998765
No 202
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=96.06 E-value=4.2 Score=49.81 Aligned_cols=439 Identities=15% Similarity=0.171 Sum_probs=222.7
Q ss_pred HHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc---------CchHHHHHHHHHHh-ccCChhHHhHHHHHHHHHhhhc
Q 006912 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI---------AGWLELLQALVTCL-DSNDINHMEGAMDALSKICEDI 162 (626)
Q Consensus 93 ~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~---------~~~~~ll~~l~~~l-~~~~~~~r~~~l~~l~~l~~~~ 162 (626)
.++..+...+...++.+|..++.....+++.... +....++..+..+. .++++.+|...+..+. +.+
T Consensus 481 ~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~ 557 (2341)
T KOG0891|consen 481 FVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERF 557 (2341)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cch
Confidence 3444455556677889999887777777655321 11334444444433 3556666655554443 222
Q ss_pred hhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhc-CCCCHHHHHHH
Q 006912 163 PQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKLV 241 (626)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~ 241 (626)
...+ ..+..+..++..+.+..-..+.++...++.+....|..+.+.+........+-+ .+.-.-+....
T Consensus 558 ~~~l----------aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~ 627 (2341)
T KOG0891|consen 558 DAQL----------AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEES 627 (2341)
T ss_pred hhhh----------cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHH
Confidence 1111 125556667778888888889999999988888777655555543322222211 12222233334
Q ss_pred HHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhh
Q 006912 242 CAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDE 321 (626)
Q Consensus 242 ~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~ 321 (626)
..-+..++...+....+|+..++..++....+.+..+-..+...++.+|... ....+.....+++.+.+.+.+..
T Consensus 628 a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~--g~~~~~~~~~~~~~~~~~l~~~s--- 702 (2341)
T KOG0891|consen 628 AKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVG--GEEMVKWVDELFSLIIKMLQDQS--- 702 (2341)
T ss_pred HHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhc--cchhhhccchHHHHHHHHHHHhh---
Confidence 4445566666777778888888888888888887777777888888887762 22232223333333322222100
Q ss_pred hhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-----chHHhHHHHHHH
Q 006912 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-----EILPTLMPVIQA 396 (626)
Q Consensus 322 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-----~~~~~l~~~l~~ 396 (626)
....|.++..++..+...-|- .-.|.++..+..
T Consensus 703 ------------------------------------------~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~ 740 (2341)
T KOG0891|consen 703 ------------------------------------------SLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILIN 740 (2341)
T ss_pred ------------------------------------------hhhchhHHHHHhhhhhcccceEecccccChHHHHHHHH
Confidence 012356666666666554432 223444444443
Q ss_pred hhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHH--hh-hcCCCch-HHHHHHHHHHHHHHHHHhhhcCCCc
Q 006912 397 KLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFL--IP-LLDDKFP-LIRSISCWTLSRFSKFIVQDIGHQN 472 (626)
Q Consensus 397 ~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l--~~-~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~ 472 (626)
.+.... ....|.+++..+|..+... ++........ .. .....++ .-+... -.|...+.
T Consensus 741 ~~~te~--~~~ir~~~v~~~g~~g~~d-----~~~~~~~~~~~~~~~~~~~~k~~~~~~~~--~~~~~~~~--------- 802 (2341)
T KOG0891|consen 741 ILKTEQ--SSTIRREAIRLLGLLGALD-----PYKHKVTEGTSASKISSEQIKSDIDISLL--ESGVNPSN--------- 802 (2341)
T ss_pred HHhHhh--hhHHHHHHHHHhhhhcccc-----hhHHHHHhhhhhHhhhhccccccchHHHH--Hhhhhhhh---------
Confidence 333221 1556778888777443322 2211111111 11 1111111 001000 00000000
Q ss_pred hhhhHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 006912 473 GREQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (626)
Q Consensus 473 ~~~~~~~ll~~l~~~l~d~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~ 551 (626)
..-+--..+..+...+.|+. ..--.....+...+....+-....+++.+++.++...........+..+.-++..+.-.
T Consensus 803 ~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~~ 882 (2341)
T KOG0891|consen 803 DEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAIV 882 (2341)
T ss_pred hhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhcc
Confidence 00111112223444445542 22234456667777777777778888888888776655333233333333333333222
Q ss_pred ccccCChhhhhhhhHHHHHHHhcCCCCCCcc-chHHHHHHHHHHHhccccccchHHHHHHHHHHH
Q 006912 552 GFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINII 615 (626)
Q Consensus 552 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~~l 615 (626)
..... +|.+.+...+...|. .+..+ ...+..+..+..+++..|..|++..++..+..+
T Consensus 883 ~~h~~--~~~~~i~~~i~~~~~----~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~ 941 (2341)
T KOG0891|consen 883 RQHIR--PYMESIFTLIKDFWP----PDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVL 941 (2341)
T ss_pred chhHh--hhhhhHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheee
Confidence 22221 233333332222222 11122 244556777788888899999988888777665
No 203
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.97 E-value=0.1 Score=40.99 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=72.4
Q ss_pred hHHHHhHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHH
Q 006912 213 SALFVSMDQYLQGLFLLSNDPS----AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (626)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 288 (626)
+.+.+++-.++..+-+.+.|.+ ..-++.+++.+..+++..+..+....+++...+...+. .++.+..|+++|..
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~ 80 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHH
Confidence 3445566566666666666544 35689999999999998888888888888887777765 44589999999999
Q ss_pred hhccCCcchhHHhhhhhhHHHHhhh
Q 006912 289 YFEAQLPHENLKEFLPRLVPVLLSN 313 (626)
Q Consensus 289 l~~~~~~~~~~~~~l~~li~~l~~~ 313 (626)
+...- ..+.+.+.+++++..+++.
T Consensus 81 ~i~~L-~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 81 LIKTL-KEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHhC-CHHHHHHHHHHHHHHHHHh
Confidence 88762 3356777788777777654
No 204
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.2 Score=47.79 Aligned_cols=143 Identities=21% Similarity=0.216 Sum_probs=94.7
Q ss_pred cCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHH-
Q 006912 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD- 220 (626)
Q Consensus 142 ~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~- 220 (626)
+.+..-++.++.-|..+++.+....+ -.-.+.+..++.++++++..+|..|...++.+++..|..-...+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAnd--------l~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~ 165 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNAND--------LISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL 165 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHh--------HhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 34678889999999999988765321 111334555666999999999999999999999998865433332
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhccC--CChHHHHHHHhHHHHhhcc
Q 006912 221 QYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKD--TDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 221 ~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~--~~~~v~~~a~~~l~~l~~~ 292 (626)
+.++.|+..+. +.+..+|..|+-++..++.+.+.-...++. .=...+...++. .+...+..++.++..+.+.
T Consensus 166 ~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 166 GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 35677777554 455678899999999999887654332221 001223334444 4445566666666666553
No 205
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.92 E-value=0.065 Score=42.08 Aligned_cols=97 Identities=14% Similarity=0.170 Sum_probs=73.2
Q ss_pred hhhhHHHHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 006912 473 GREQFEKVLMGLLKRILDTN----KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (626)
Q Consensus 473 ~~~~~~~ll~~l~~~l~d~~----~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~ 548 (626)
.++++-.++..+-..++|.+ ..-|..+..+++.+++.++..+..+.+.++..|...++. ++-+..+++|-..++
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i 82 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLI 82 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHH
Confidence 46677788888888888754 245899999999999988988888888888888777764 345668999999999
Q ss_pred HHhccccCChhhhhhhhHHHHHHH
Q 006912 549 DAVGFELNQPVYLDILMPPLIAKW 572 (626)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~~l~~~~ 572 (626)
..++.+-.. +.+++++..+...|
T Consensus 83 ~~L~~~~l~-~ll~~~~~~i~~~~ 105 (107)
T smart00802 83 KTLKEEELG-PLLDQIFAAILPLW 105 (107)
T ss_pred HhCCHHHHH-HHHHHHHHHHHHhc
Confidence 998764322 36666665555554
No 206
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=95.82 E-value=3.8 Score=46.74 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=49.7
Q ss_pred hHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHH--HHHHHhhhcCCCchHHHHHHHHHHHHHHHH
Q 006912 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (626)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~--l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (626)
.++.++.+.|++.. ..+.-.+|-+|..+...++++ ..++.+ .++.+...+.+.|..+...++.+|-++..+
T Consensus 530 NCLq~LLQ~LKS~S---LTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHS---LTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hHHHHHHHHhhhcc---eEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 35556666676765 666677788888888777543 344433 577788888888998888888888777644
No 207
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=2.7 Score=42.82 Aligned_cols=264 Identities=12% Similarity=0.084 Sum_probs=141.9
Q ss_pred CChHHHHHHHHHHHHHHhc-------cchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCc--------cch
Q 006912 192 PHTSLRKLSLGSVNQFIML-------MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP--------SFL 256 (626)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--------~~~ 256 (626)
.+.+-+.+..+.|..+.+. .|+.+ -.++..++-..+.++.++.+..+..+..+-+... ..+
T Consensus 259 ~d~d~~~a~~RIFtel~eaf~~~i~~np~~~----l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~f 334 (559)
T KOG2081|consen 259 EDLDKNEAICRIFTELGEAFVVLISTNPEEF----LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIF 334 (559)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc----hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHh
Confidence 4555555555555555433 23311 1234455555667777888888888876654321 356
Q ss_pred hhhHHHHHHHHHhhccCCC------------hHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhh
Q 006912 257 EPHLRNLFEYMLQVNKDTD------------DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (626)
Q Consensus 257 ~~~l~~l~~~~~~~~~~~~------------~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~ 324 (626)
+||...++..+....+-+. .+.|....+.+..++---...+.++. +...+..
T Consensus 335 rpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~--------~~~~l~e-------- 398 (559)
T KOG2081|consen 335 RPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQ--------MYIRLKE-------- 398 (559)
T ss_pred HHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHH--------HHHHHcc--------
Confidence 7888888887775532211 23455555555444322111111111 1010000
Q ss_pred hhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---chHHhHHHHHHHhhcCC
Q 006912 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSAS 401 (626)
Q Consensus 325 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~ 401 (626)
....|..-.++.-.+..+++.... +++|.++..+.+.=..
T Consensus 399 ------------------------------------~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q- 441 (559)
T KOG2081|consen 399 ------------------------------------NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQ- 441 (559)
T ss_pred ------------------------------------CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccc-
Confidence 133477788888999999888854 5566665555433222
Q ss_pred CCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHH
Q 006912 402 GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481 (626)
Q Consensus 402 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll 481 (626)
...|+.++..+|.+.+-.... ...+.-++.++...+.... ...++..+...++..+...+ ..+.+++..++
T Consensus 442 ----~~~~~ts~ll~g~~~ew~~~~-p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~--~~l~~~~~~l~ 512 (559)
T KOG2081|consen 442 ----APLRYTSILLLGEYSEWVEQH-PELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQM--TCLIPSLLELI 512 (559)
T ss_pred ----hhHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHh--hhhhHHHHHHH
Confidence 449999999999998754211 1234445556666666544 66666667777777665320 01122222222
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHH
Q 006912 482 MGLLKRILDTNKRVQEAACSAFATLEEEAA-EELAPRLEIILQH 524 (626)
Q Consensus 482 ~~l~~~l~d~~~~v~~~a~~al~~l~~~~~-~~~~~~l~~i~~~ 524 (626)
..+..... ++.... .++.++.++.+.+ .+..+.++.++..
T Consensus 513 ~~l~~~~~--~~e~a~-l~~~~s~i~~~lp~~k~~~~~~el~~~ 553 (559)
T KOG2081|consen 513 RSLDSTQI--NEEAAC-LLQGISLIISNLPAHKAKIALEELCEP 553 (559)
T ss_pred HHHHHHhc--cHHHHH-HHHHHHHHHhcCCHhhhhHHHHHHhhH
Confidence 22222222 233333 6777777777664 4556666666554
No 208
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=1.3 Score=50.83 Aligned_cols=111 Identities=19% Similarity=0.131 Sum_probs=90.0
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccch-HHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchh
Q 006912 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (626)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (626)
+.-+..+++-+..-|+..|..|+..+..++..... .....++.+...+.+++.|++..+|.....++..++......+.
T Consensus 40 dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~ls 119 (1312)
T KOG0803|consen 40 DSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLS 119 (1312)
T ss_pred CHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455677777778999999999999999865432 33334666777777888999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhccCCChHHHHHHHhHHHHh
Q 006912 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (626)
Q Consensus 258 ~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l 289 (626)
||++.++++.+-..-|.+..|...|...+...
T Consensus 120 p~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 120 PFLKSLIPPWLGGQFDLDYPVSEAAKASFKDG 151 (1312)
T ss_pred HHHHhhhhhhhheecccchHHHHHHHHHHHhh
Confidence 99999999999888888888877777665554
No 209
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.33 Score=48.94 Aligned_cols=124 Identities=16% Similarity=0.189 Sum_probs=85.3
Q ss_pred HHHhHhhh-hhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhc-cCChhHHhHHHHHHHHHhhhchhccccCCC
Q 006912 94 IKSELLPC-LGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (626)
Q Consensus 94 i~~~L~~~-l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~-~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~ 171 (626)
+...++.. ..+.+..||+++..+++-++-.+ +++++...+.+. +.++.+|.+...+|+-.|...+.
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------- 619 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------- 619 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeEecC-----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc-------
Confidence 33444443 67788889998888888777554 344555555554 56888998888888887775553
Q ss_pred CCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHH
Q 006912 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAE 236 (626)
Q Consensus 172 ~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 236 (626)
+..+..+-.+..|+..-||..|+-+++-+.-...+.+.+.+..+...+.+.+.+..++
T Consensus 620 -------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 620 -------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred -------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHh
Confidence 2223334445567788899999999988876666677777777777777777665443
No 210
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.69 E-value=0.11 Score=39.53 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=62.6
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHhhhch-hccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhc
Q 006912 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIP-QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (626)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~-~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (626)
.+......+.|+.+-+|..|+..|+.+++.-. .. .....++..+.+.++|+++-|-..|++++..++..
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~----------~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPV----------IDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcch----------hhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 45667777889999999999999999998766 11 23588899999999999999999999999999988
Q ss_pred cchHHH
Q 006912 211 MPSALF 216 (626)
Q Consensus 211 ~~~~~~ 216 (626)
.|+...
T Consensus 74 ~p~~vl 79 (92)
T PF10363_consen 74 HPDEVL 79 (92)
T ss_pred ChHHHH
Confidence 776543
No 211
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.25 Score=47.86 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=107.2
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCc
Q 006912 393 VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN 472 (626)
Q Consensus 393 ~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 472 (626)
-+...+.+.+ ..+|.-|+..+..+...-+..+..++..+++.+.+.+.|.+..||.....++..++...... .
T Consensus 62 eLl~qlkHhN---akvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e----~ 134 (393)
T KOG2149|consen 62 ELLSQLKHHN---AKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKE----D 134 (393)
T ss_pred HHHhhhcCch---HhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchh----h
Confidence 3445566777 89999999998887776555566677788899999999999999999999988877655433 3
Q ss_pred hhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhh
Q 006912 473 GREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (626)
Q Consensus 473 ~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~ 532 (626)
..+++.-+++.+...|....+.+|..+...+..+++.+++.+..+...+++.+...+...
T Consensus 135 ~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~~ 194 (393)
T KOG2149|consen 135 QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISKL 194 (393)
T ss_pred hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHh
Confidence 577888888999999998899999999999999999999888777777777766666543
No 212
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.52 E-value=0.23 Score=51.16 Aligned_cols=128 Identities=16% Similarity=0.180 Sum_probs=97.6
Q ss_pred HHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc--cchhh----hHHHHHHHHhhhcCC
Q 006912 371 SAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI--KGLYP----HLSEIVAFLIPLLDD 444 (626)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~--~~~~~----~l~~l~~~l~~~l~d 444 (626)
....+..++...|+-++.. +..+.+++.+.+ ...|-+.+.+.+.+.+... +.+.+ .+..++..+..++.|
T Consensus 282 islFl~kls~l~p~i~lrq-~~~~~~LLdses---~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D 357 (1128)
T COG5098 282 ISLFLNKLSELSPGIMLRQ-YEHFDELLDSES---FTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSD 357 (1128)
T ss_pred HHHHHHHHhhcCchHHHHH-HHHHHHHhcccc---hhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhc
Confidence 4455666777766644433 455677888887 9999999999998887653 22333 556688889999999
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 006912 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (626)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (626)
.+|.+|..|+..+..++..-.. ....-..+...+..+++|.+..||..|.+.+++++-
T Consensus 358 ~~py~RtKalqv~~kifdl~sk------~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 358 TYPYTRTKALQVLEKIFDLNSK------TVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cchHHHHHHHHHHHHHHhCccc------ccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999999999888865432 233456778888999999999999999999998874
No 213
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.39 E-value=1.2 Score=45.56 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=48.5
Q ss_pred cccHHHHHHHHHHHHHhhcCcchHHhHHH-HHHHhhcCCCCCChhHHHHHHHHHHHHHccCc
Q 006912 364 VWNLRKCSAAALDVLSNVFGDEILPTLMP-VIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (626)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~ 424 (626)
.+.-|-.|+.+|+.+...++......+.. .+..+++++. ...|..+...+..++....
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~s---a~qR~~aalvl~ewa~~~~ 158 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPS---ATQRLLAALVLEEWAKACK 158 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchh---HHHHHHHHHHHHHHHHhCc
Confidence 35678999999999999998866666665 6899999988 8889999999998887664
No 214
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.083 Score=45.95 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---Hhcc
Q 006912 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD---AVGF 553 (626)
Q Consensus 477 ~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~---~~~~ 553 (626)
+...++.++..|.+.+..-+..|-.-+..++...++.+.|.++.++..|...+...+.++...++.+|.-++. .+|.
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 3556677777777767777888889999999999999999999999999999999988888877777777655 4567
Q ss_pred ccCChhhhhhhhHHHHHHHhcC
Q 006912 554 ELNQPVYLDILMPPLIAKWQQL 575 (626)
Q Consensus 554 ~~~~~~~~~~l~~~l~~~~~~~ 575 (626)
.+. ||+.+++|.+ +.+++.
T Consensus 192 aLV--PfYRQlLp~~-n~~k~~ 210 (262)
T KOG3961|consen 192 ALV--PFYRQLLPVL-NTFKNS 210 (262)
T ss_pred hhh--hHHHHhhhhh-hhhccc
Confidence 776 7999999854 577654
No 215
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=2.7 Score=39.90 Aligned_cols=313 Identities=12% Similarity=0.130 Sum_probs=167.4
Q ss_pred CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCC--CChHHHHHHHHHH
Q 006912 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSV 204 (626)
Q Consensus 127 ~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--~~~~vr~~al~~l 204 (626)
...+-++-.+. .-.+++..+...++.++..+...-|+.++ .+-+..++..|.+ .+.++-...+.++
T Consensus 104 ga~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~d-----------a~g~~vvv~lL~~~~~~~dlt~~~~~~v 171 (461)
T KOG4199|consen 104 GAHDALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFD-----------AEAMAVVLKLLALKVESEEVTLLTLQWL 171 (461)
T ss_pred CCcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhc-----------cccHHHHHHHHhcccchHHHHHHHHHHH
Confidence 34444444444 46677777888899999888877776543 2223445555554 4567777777777
Q ss_pred HHHHhccchHHHHhHH-HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhCcc-----chhhhHHHH-----HHHHHhhcc
Q 006912 205 NQFIMLMPSALFVSMD-QYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPS-----FLEPHLRNL-----FEYMLQVNK 272 (626)
Q Consensus 205 ~~~~~~~~~~~~~~~~-~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~-----~~~~~l~~l-----~~~~~~~~~ 272 (626)
...+-...-.-...|. .+++.+.+.++ .+...+..+.+.++..+.-...- ....|-..+ +..+.+.++
T Consensus 172 ~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~ 251 (461)
T KOG4199|consen 172 QKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQ 251 (461)
T ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHH
Confidence 6544221111111122 34566665444 33345667777887776532211 111222222 222233322
Q ss_pred -CCChHHHHHHHhHHHHhhccCCcchhHHhhhhh-hHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCC
Q 006912 273 -DTDDDVALEACEFWHSYFEAQLPHENLKEFLPR-LVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHG 350 (626)
Q Consensus 273 -~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~-li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 350 (626)
..++++-...+..+..++-. .+..+.+.+. =+..++..+.+..+
T Consensus 252 A~~dp~~L~~l~~tl~~lAVr---~E~C~~I~e~GGl~tl~~~i~d~n~------------------------------- 297 (461)
T KOG4199|consen 252 AGIDPDSLVSLSTTLKALAVR---DEICKSIAESGGLDTLLRCIDDSNE------------------------------- 297 (461)
T ss_pred ccCCccHHHHHHHHHHHHHHH---HHHHHHHHHccCHHHHHHHHhhhch-------------------------------
Confidence 12344444444444444321 0111110000 01122222221110
Q ss_pred CCCCCCCCccccccccHHHHHHHHHHHHHhhcCcch-HHhH-----HHHHHH-hhcCCCCCChhHHHHHHHHHHHHHccC
Q 006912 351 SENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI-LPTL-----MPVIQA-KLSASGDEAWKDREAAVLALGAIAEGC 423 (626)
Q Consensus 351 ~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~l-----~~~l~~-~l~~~~~~~~~~r~aal~~l~~l~~~~ 423 (626)
-..|..+..|++.+....|.+- -..+ .+.+.. .+++.+ ++.+...++.++.-++-..
T Consensus 298 --------------~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~--~p~Vi~~~~a~i~~l~LR~ 361 (461)
T KOG4199|consen 298 --------------QGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSD--DPLVIQEVMAIISILCLRS 361 (461)
T ss_pred --------------hhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCC--ChHHHHHHHHHHHHHHhcC
Confidence 1257778888888888777632 1111 222222 223322 2889999999998888777
Q ss_pred ccchhhhHHH-HHHHHhhhcC-CC-chHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHH
Q 006912 424 IKGLYPHLSE-IVAFLIPLLD-DK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAAC 500 (626)
Q Consensus 424 ~~~~~~~l~~-l~~~l~~~l~-d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~ 500 (626)
++.-...++. .-...++.++ +| ...|++.|||.+.++...-.+. ....+..-++.++..-..+++.++..|-
T Consensus 362 pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~-----~~~~l~~GiE~Li~~A~~~h~tce~~ak 436 (461)
T KOG4199|consen 362 PDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN-----RTILLANGIEKLIRTAKANHETCEAAAK 436 (461)
T ss_pred cchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc-----cchHHhccHHHHHHHHHhcCccHHHHHH
Confidence 6554444433 2233444444 44 5689999999999998776543 4566667777888777777888888887
Q ss_pred HHHHHH
Q 006912 501 SAFATL 506 (626)
Q Consensus 501 ~al~~l 506 (626)
.||..+
T Consensus 437 aALRDL 442 (461)
T KOG4199|consen 437 AALRDL 442 (461)
T ss_pred HHHHhc
Confidence 777765
No 216
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.11 E-value=2.8 Score=40.87 Aligned_cols=197 Identities=15% Similarity=0.099 Sum_probs=104.7
Q ss_pred CChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhcc------CChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHH
Q 006912 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS------MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVV 120 (626)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~------l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i 120 (626)
+.+...+..+|... +.++.+.++...++-..+...-.. .........-..++..+..++..++..++.+++.+
T Consensus 54 ~~~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 54 DQYASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp --------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45666677777652 378888888888888766542110 01101111445666677788999999999999999
Q ss_pred HhhcCcCchH---HHHHHHHHHhcc----CChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhc----
Q 006912 121 VQLGGIAGWL---ELLQALVTCLDS----NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF---- 189 (626)
Q Consensus 121 ~~~~~~~~~~---~ll~~l~~~l~~----~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l---- 189 (626)
+...+...-. +.++.+.+.+.+ ++...+..++.+|..+...-..... + .-...++.+...+
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~------f--~~~~~v~~l~~iL~~~~ 204 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQV------F--WKSNGVSPLFDILRKQA 204 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHH------H--HTHHHHHHHHHHHH---
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHH------H--HhcCcHHHHHHHHHhhc
Confidence 9886544444 677777777664 4455678899999998754332110 0 0155566666666
Q ss_pred -CCC--ChHHHHHHHHHHHHHHhccchHHHHhH--HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhCcc
Q 006912 190 -QSP--HTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPS 254 (626)
Q Consensus 190 -~~~--~~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~ 254 (626)
.++ +..+...++-|+-.+ ++.++. ...+ ..+++.+...++ ...+.+-.-++.++..+++..++
T Consensus 205 ~~~~~~~~Ql~Y~~ll~lWlL-SF~~~~-~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 205 TNSNSSGIQLQYQALLCLWLL-SFEPEI-AEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp ------HHHHHHHHHHHHHHH-TTSHHH-HHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST
T ss_pred ccCCCCchhHHHHHHHHHHHH-hcCHHH-HHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH
Confidence 222 335556666555443 332322 1111 125666666554 34566777778888888877665
No 217
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=95.08 E-value=3.8 Score=40.30 Aligned_cols=111 Identities=11% Similarity=0.041 Sum_probs=71.9
Q ss_pred HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccch----hhhHHHHHHHHhh-hcCCCchHHHHHHHHHHHHHHH
Q 006912 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL----YPHLSEIVAFLIP-LLDDKFPLIRSISCWTLSRFSK 462 (626)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~----~~~l~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~ 462 (626)
|.++..+..++.+.+ ....-++..++|.++..-...+ ..++..++..+.+ .-.|.+.+++.+++.++..+.-
T Consensus 314 p~~l~~~~sw~~S~d---~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDD---SNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred cHHHHHHHHHhcCCc---hhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 457888888998888 8889999999999988643222 1334444444433 2236789999999999988874
Q ss_pred HHhhhcCCCchhhhH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 006912 463 FIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (626)
Q Consensus 463 ~~~~~~~~~~~~~~~-~~ll~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (626)
-.++ ...++ ..+...++..++...|.|+..-..++..+.
T Consensus 391 Pv~n------ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~ 430 (604)
T KOG4500|consen 391 PVSN------KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIR 430 (604)
T ss_pred cCCc------hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3221 11111 234556666666666777666666665554
No 218
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.95 E-value=0.56 Score=40.23 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=77.3
Q ss_pred chHHHHHHHHHHhc------------------cCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhc
Q 006912 128 GWLELLQALVTCLD------------------SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (626)
Q Consensus 128 ~~~~ll~~l~~~l~------------------~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 189 (626)
..+.++|.+..... |+.-.+|.+|..++..+.+.+...+ .+..++..+..++
T Consensus 6 ~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~----------~~~~~~~~v~~GL 75 (169)
T PF08623_consen 6 HLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRI----------DISEFLDRVEAGL 75 (169)
T ss_dssp THHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-----------HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhC----------CHHHHHHHHHhhc
Confidence 45677777776542 2223799999999999999766543 2578899999999
Q ss_pred CCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhc----CCC--------CHHHHHHHHHHHHHHH
Q 006912 190 QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS----NDP--------SAEVRKLVCAAFNLLI 249 (626)
Q Consensus 190 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~--------~~~~~~~~~~~l~~l~ 249 (626)
.| +.++|..+...+..++...|..+...++.+.+.+-..+ ++. ..+..+.++++...+-
T Consensus 76 ~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~ 146 (169)
T PF08623_consen 76 KD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALN 146 (169)
T ss_dssp SS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-
T ss_pred CC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999989887776665555555433 221 1244556666666663
No 219
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.94 E-value=1.6 Score=42.61 Aligned_cols=180 Identities=14% Similarity=0.053 Sum_probs=92.0
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHHHHccCccchh----hhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcC
Q 006912 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY----PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG 469 (626)
Q Consensus 394 l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~----~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 469 (626)
+.+.++.+| +.....++..++.++...+.... ..++.++..+...+..++..++..|+.+++.+...-..
T Consensus 110 fl~ll~~~D---~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~--- 183 (312)
T PF03224_consen 110 FLKLLDRND---SFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY--- 183 (312)
T ss_dssp HHHH-S-SS---HHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH---
T ss_pred HHHHhcCCC---HHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh---
Confidence 334777778 99999999999999887754333 34555555555555556677888999999988743221
Q ss_pred CCchhhh-HHHHHHHHHHHh-----ccCC--HHHHHHHHHHHHHHH--HHhcccccchHHHHHHHHHHHHhhh-hHHHHH
Q 006912 470 HQNGREQ-FEKVLMGLLKRI-----LDTN--KRVQEAACSAFATLE--EEAAEELAPRLEIILQHLMMAFGKY-QRRNLR 538 (626)
Q Consensus 470 ~~~~~~~-~~~ll~~l~~~l-----~d~~--~~v~~~a~~al~~l~--~~~~~~~~~~l~~i~~~l~~~l~~~-~~~~~~ 538 (626)
...+ -...++.+...+ .++. ..++..++-++=-+. ....+.+..+. +++.+...+... .+++.|
T Consensus 184 ---R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~--~i~~L~~i~~~~~KEKvvR 258 (312)
T PF03224_consen 184 ---RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY--LIPLLADILKDSIKEKVVR 258 (312)
T ss_dssp ---HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS--HHHHHHHHHHH--SHHHHH
T ss_pred ---HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc--hHHHHHHHHHhcccchHHH
Confidence 0100 144455555555 2222 445555544443322 22222222211 677777777654 467778
Q ss_pred HHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCCCCccchH
Q 006912 539 IVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPL 585 (626)
Q Consensus 539 ~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 585 (626)
.++.++-+++......+. +..+..=++.+++.+..-.-.|+++..-
T Consensus 259 v~la~l~Nl~~~~~~~~~-~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 259 VSLAILRNLLSKAPKSNI-ELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHHHHHHTTSSSSTTHH-HHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred HHHHHHHHHHhccHHHHH-HHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 888888888766554332 1222222233444554333245554433
No 220
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.93 E-value=2.3 Score=46.30 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=71.9
Q ss_pred CcHHHHHHHHHHHHHHHhhcC-c------------CchHHHHHHHHH----HhccCChhHHhHHHHHHHHHhhhchhccc
Q 006912 105 ADRHIRSTVGTIVSVVVQLGG-I------------AGWLELLQALVT----CLDSNDINHMEGAMDALSKICEDIPQVLD 167 (626)
Q Consensus 105 ~~~~vr~~~~~~l~~i~~~~~-~------------~~~~~ll~~l~~----~l~~~~~~~r~~~l~~l~~l~~~~~~~~~ 167 (626)
..+.+|..+...++.++.... . .....+++.+.+ .....+...+..++.+|+.+-.
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------- 519 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------- 519 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------
Confidence 467788888888888886531 1 112333444444 3445566778888888877632
Q ss_pred cCCCCCccchhhhhHHHHHHhcCCC---ChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006912 168 SDVPGLAECPINIFLPRLLQFFQSP---HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (626)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~---~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 244 (626)
...++.+...+.+. ...+|.+|+.+|..+....|....+.+ ++.+.+.. .+.++|..|+..
T Consensus 520 -----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l---~~I~~n~~--e~~EvRiaA~~~ 583 (618)
T PF01347_consen 520 -----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREIL---LPIFMNTT--EDPEVRIAAYLI 583 (618)
T ss_dssp -----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHH---HHHHH-TT--S-HHHHHHHHHH
T ss_pred -----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHH---HHHhcCCC--CChhHHHHHHHH
Confidence 44566677777665 678999999999988766665544333 44444332 356788887755
Q ss_pred HH
Q 006912 245 FN 246 (626)
Q Consensus 245 l~ 246 (626)
|.
T Consensus 584 lm 585 (618)
T PF01347_consen 584 LM 585 (618)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 221
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.86 E-value=2.9 Score=40.79 Aligned_cols=145 Identities=9% Similarity=0.076 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHccCcc--c-hhhhHHHHHHHHhhhcCCCchHHHHH-HHHHHHHHHHHHhhhcCCCchhhhHHHHHHH
Q 006912 408 DREAAVLALGAIAEGCIK--G-LYPHLSEIVAFLIPLLDDKFPLIRSI-SCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (626)
Q Consensus 408 ~r~aal~~l~~l~~~~~~--~-~~~~l~~l~~~l~~~l~d~~~~vr~~-a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 483 (626)
+|...+..+..+.....+ . ....++.++..++.-.++..|..|.. ++.+++.++..+++.+ .......+..++..
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~-~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELI-QPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 455556666666555431 1 13455666666666666667777764 4556667777666532 23455666677777
Q ss_pred HHHHhccC---CHHHHHHHHHHHHHHHHHhccccc----chHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Q 006912 484 LLKRILDT---NKRVQEAACSAFATLEEEAAEELA----PRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (626)
Q Consensus 484 l~~~l~d~---~~~v~~~a~~al~~l~~~~~~~~~----~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~ 553 (626)
.+.++.++ .|..|..-...|..+++.|.+.+. .....++..+...+++...++...+++++..++..+..
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 77777643 599999999999999998865443 34677788888888888888888888888888777655
No 222
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.83 E-value=5.8 Score=41.15 Aligned_cols=291 Identities=13% Similarity=0.062 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHH
Q 006912 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (626)
Q Consensus 108 ~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~-~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~ 186 (626)
.-|-.++.-++......+....+++......++... ....|+.++..+..+++.-...... .-..++..+.
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~--------~R~~fF~~I~ 76 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGL--------MRAEFFRDIS 76 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHH--------HHHHHHHHHh
Confidence 446677777777777665555566655555666544 4569999999999998876542110 0122333332
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhcc---chHHHHhHHHHHHHHHHhcC--------------------CCCHHHHHHHHH
Q 006912 187 QFFQSPHTSLRKLSLGSVNQFIMLM---PSALFVSMDQYLQGLFLLSN--------------------DPSAEVRKLVCA 243 (626)
Q Consensus 187 ~~l~~~~~~vr~~al~~l~~~~~~~---~~~~~~~~~~~l~~l~~~~~--------------------~~~~~~~~~~~~ 243 (626)
..-.+++-..|..|+.+|..=...+ ..++.+.+..|++.+++... +.+...-...+.
T Consensus 77 ~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 156 (464)
T PF11864_consen 77 DPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQ 156 (464)
T ss_pred cCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHH
Confidence 2222234467777777776544333 23445556666666662110 012233445566
Q ss_pred HHHHHHhhCccchh-hhHHHHHHHHHhh-ccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhh
Q 006912 244 AFNLLIEVRPSFLE-PHLRNLFEYMLQV-NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDE 321 (626)
Q Consensus 244 ~l~~l~~~~~~~~~-~~l~~l~~~~~~~-~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~ 321 (626)
.+..+++.....+. ..+..++..++.. .+...++.-..++.++.++......+. .-+..++..|.......
T Consensus 157 ~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~---~sl~~~i~vLCsi~~~~---- 229 (464)
T PF11864_consen 157 FLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPS---ESLSPCIEVLCSIVNSV---- 229 (464)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCCh---HHHHHHHHHHhhHhccc----
Confidence 66666665555444 4555666655554 333333334677888888766522221 22333444432211100
Q ss_pred hhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhh-cCcchHHhHHHHHHHhhcC
Q 006912 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV-FGDEILPTLMPVIQAKLSA 400 (626)
Q Consensus 322 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~-~~~~~~~~l~~~l~~~l~~ 400 (626)
+....+-+++..+.+. .|.. .+..+...+.+
T Consensus 230 --------------------------------------------~l~~~~w~~m~nL~~S~~g~~----~i~~L~~iL~~ 261 (464)
T PF11864_consen 230 --------------------------------------------SLCKPSWRTMRNLLKSHLGHS----AIRTLCDILRS 261 (464)
T ss_pred --------------------------------------------ccchhHHHHHHHHHcCccHHH----HHHHHHHHHcc
Confidence 1223344455555533 2333 34444555522
Q ss_pred CC---CCChhHHHHHHHHHHHHHccCccchh----hhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q 006912 401 SG---DEAWKDREAAVLALGAIAEGCIKGLY----PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (626)
Q Consensus 401 ~~---~~~~~~r~aal~~l~~l~~~~~~~~~----~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (626)
++ ..+..+..+|+..++.+.-+.++.-. -....++|.+...++..++.|-...+..+.++.
T Consensus 262 ~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 262 PDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 11 23377778999999988776632211 112247888888888888877777777766666
No 223
>PF05536 Neurochondrin: Neurochondrin
Probab=94.76 E-value=6.6 Score=41.47 Aligned_cols=232 Identities=12% Similarity=0.067 Sum_probs=131.1
Q ss_pred CChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHH----hHhh-hhhC-------CcHHHHHHHH
Q 006912 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS----ELLP-CLGA-------ADRHIRSTVG 114 (626)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~----~L~~-~l~~-------~~~~vr~~~~ 114 (626)
+..+..+..+|. +.+++-|+++..++++.+... ......+..|.+ .++. +|.. +....+..+.
T Consensus 4 ~~~l~~c~~lL~---~~~D~~rfagL~lvtk~~~~~--~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lav 78 (543)
T PF05536_consen 4 SASLEKCLSLLK---SADDTERFAGLLLVTKLLDAD--DEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAV 78 (543)
T ss_pred hHHHHHHHHHhc---cCCcHHHHHHHHHHHHcCCCc--hhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 334455666775 445888888888887666421 111112211221 2222 2222 2234455555
Q ss_pred HHHHHHHhhc---CcCchHHHHHHHHHHhccCCh-hHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcC
Q 006912 115 TIVSVVVQLG---GIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (626)
Q Consensus 115 ~~l~~i~~~~---~~~~~~~ll~~l~~~l~~~~~-~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 190 (626)
.+++.++... .....-+-+|.+.+.+.+.+. .+..-++.+|..++. .++.... -.-.+.++.+.+.+.
T Consensus 79 svL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~a-------Ll~~g~v~~L~ei~~ 150 (543)
T PF05536_consen 79 SVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKA-------LLESGAVPALCEIIP 150 (543)
T ss_pred HHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHH-------HHhcCCHHHHHHHHH
Confidence 6666666532 123445568999999987665 788889999998883 3322110 011345666666666
Q ss_pred CCChHHHHHHHHHHHHHHhccchHH----HHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccc------hhhhH
Q 006912 191 SPHTSLRKLSLGSVNQFIMLMPSAL----FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF------LEPHL 260 (626)
Q Consensus 191 ~~~~~vr~~al~~l~~~~~~~~~~~----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~------~~~~l 260 (626)
+ .+.....|++.+..++...+... ...+..+++.+...+.......+-.++..|..+....+.. -..+.
T Consensus 151 ~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~ 229 (543)
T PF05536_consen 151 N-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWL 229 (543)
T ss_pred h-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhH
Confidence 6 55678888888888776654222 1223345555655555444556777888888888766321 12344
Q ss_pred HHHHHHHHhhccC-CChHHHHHHHhHHHHhhcc
Q 006912 261 RNLFEYMLQVNKD-TDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 261 ~~l~~~~~~~~~~-~~~~v~~~a~~~l~~l~~~ 292 (626)
..+...+...+++ ....-|..++.....+.+.
T Consensus 230 ~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 230 SDLRKGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 5666666555544 2345577777666655554
No 224
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.75 E-value=0.61 Score=45.91 Aligned_cols=116 Identities=17% Similarity=0.210 Sum_probs=77.0
Q ss_pred chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhc----------CCCchHHHHHHH
Q 006912 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL----------DDKFPLIRSISC 454 (626)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l----------~d~~~~vr~~a~ 454 (626)
.++|.++.++.+.+...-..++..-...+..+.++..+-.-.+.+|+..++|.++.++ .+.++.+|..|+
T Consensus 210 ~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA 289 (343)
T cd08050 210 QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAA 289 (343)
T ss_pred hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHH
Confidence 3344444444433332211136666667777777777766667899999999988776 246789999999
Q ss_pred HHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCH--HHHHHHHHHHHH
Q 006912 455 WTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK--RVQEAACSAFAT 505 (626)
Q Consensus 455 ~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~--~v~~~a~~al~~ 505 (626)
..++.++..+... .......++..+.+.+.|+.. ....-|...|..
T Consensus 290 ~ll~~i~~~f~~~-----y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~ 337 (343)
T cd08050 290 RLLAQICRKFSTS-----YNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSA 337 (343)
T ss_pred HHHHHHHHHcCCC-----CCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH
Confidence 9999999988653 344567778788888887642 224445554444
No 225
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=0.91 Score=44.17 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=100.2
Q ss_pred HHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh-ccc
Q 006912 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEE 513 (626)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~-~~~ 513 (626)
+.-++..+++-+..||..|..-+..+...-+. ....+...+++.+...+.|.+..||......+..++... .+.
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~-----~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~ 134 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPA-----ELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED 134 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChH-----HHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh
Confidence 34456678899999999999998888776332 345678889999999999999999999999999977654 456
Q ss_pred ccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHH
Q 006912 514 LAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (626)
Q Consensus 514 ~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~ 571 (626)
+.|+..-+++.+...+.......+.-.+..+..++..+++.+. .+...+++.+...
T Consensus 135 ~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~--~~~~~il~n~~d~ 190 (393)
T KOG2149|consen 135 QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS--RYASKILENFKDV 190 (393)
T ss_pred hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH--HHHHHHHHHHHHH
Confidence 7899999999988888877777777777777888888877665 3444455554444
No 226
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=11 Score=43.60 Aligned_cols=172 Identities=12% Similarity=0.073 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhhc-CcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccC-ccchhhhHHHHHHHHhhhcCCC
Q 006912 368 RKCSAAALDVLSNVF-GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPLLDDK 445 (626)
Q Consensus 368 r~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~-~~~~~~~l~~l~~~l~~~l~d~ 445 (626)
...+..|.+..+... |....+.++..+.....++ .+|++|.+.+.-+..+.... ........+++.-.+...+.|.
T Consensus 1504 ~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~--~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~ 1581 (1710)
T KOG1851|consen 1504 KNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADS--STWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDD 1581 (1710)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcch
Confidence 345666666666665 4477778888887644443 23999999887776654432 1234566677888888899999
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Q 006912 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAAEELAPRLEIILQ 523 (626)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~--~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~ 523 (626)
...||..|+.+|+-+...-... .............+.. +....-.|.-.++.++-.++-.+.-+++..+.
T Consensus 1582 ~i~vre~Aa~~Lsgl~~~s~~~--------~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~ 1653 (1710)
T KOG1851|consen 1582 QIEVREEAAKCLSGLLQGSKFQ--------FVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLM 1653 (1710)
T ss_pred HHHHHHHHHHHHHHHHhccccc--------cchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHH
Confidence 8899999999988776432110 0111112222222222 23334567888999988877666556666555
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006912 524 HLMMAFGKYQRRNLRIVYDAIGTLADA 550 (626)
Q Consensus 524 ~l~~~l~~~~~~~~~~~~~~l~~i~~~ 550 (626)
.+.....+. ......+-++++.+-..
T Consensus 1654 ~Ls~fa~e~-~~i~~tvkktvseFrrt 1679 (1710)
T KOG1851|consen 1654 NLSSFARES-AAIKQTVKKTVSEFRRT 1679 (1710)
T ss_pred HHHhhcCCc-hHHHHHHHHHHHHHHHH
Confidence 544333322 22233444555554433
No 227
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.62 E-value=5 Score=39.44 Aligned_cols=198 Identities=14% Similarity=0.090 Sum_probs=107.8
Q ss_pred CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhc--cCChhHHHHH----HHhHhhhhhCCcHHHHHHHHHHHHH
Q 006912 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK--SMSPSNQQYI----KSELLPCLGAADRHIRSTVGTIVSV 119 (626)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~--~l~~~~~~~i----~~~L~~~l~~~~~~vr~~~~~~l~~ 119 (626)
++.+...++++++. ...+...++...++-..++..-. .+-.+..... -...+..|...+..+-...+.+++.
T Consensus 63 ~~~~v~~fi~LlS~--~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~ 140 (442)
T KOG2759|consen 63 NAQYVKTFINLLSH--IDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSK 140 (442)
T ss_pred cHHHHHHHHHHhch--hhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHH
Confidence 34566677777764 44455555666665554432111 1111111112 2345667777888888888888888
Q ss_pred HHhhcC----cCchHHHHHHHHHHhcc-CChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCCh
Q 006912 120 VVQLGG----IAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT 194 (626)
Q Consensus 120 i~~~~~----~~~~~~ll~~l~~~l~~-~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~ 194 (626)
++.... .....-.+..+...+++ .+++.+..+..||..++..-..... +.. .....-+++.+. -+..+-
T Consensus 141 la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~--~v~--adg~~~l~~~l~--s~~~~~ 214 (442)
T KOG2759|consen 141 LACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYA--FVI--ADGVSLLIRILA--STKCGF 214 (442)
T ss_pred HHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhe--eee--cCcchhhHHHHh--ccCcch
Confidence 887642 22445556777777776 6677888899999888765433211 000 011222222222 122355
Q ss_pred HHHHHHHHHHHHHHhccchHHHHhHH--HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhCc
Q 006912 195 SLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDP-SAEVRKLVCAAFNLLIEVRP 253 (626)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~ 253 (626)
.++...+-|+-.+. +.|. +.+.+. ++++.+...+++. .+.|-.-++..+..++++.+
T Consensus 215 QlQYqsifciWlLt-Fn~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~ 274 (442)
T KOG2759|consen 215 QLQYQSIFCIWLLT-FNPH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGP 274 (442)
T ss_pred hHHHHHHHHHHHhh-cCHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 67777777765543 2221 222222 4456666655532 34565666777777777765
No 228
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=94.55 E-value=2.6 Score=35.90 Aligned_cols=146 Identities=19% Similarity=0.241 Sum_probs=82.5
Q ss_pred HHHHhHhhhhhC--Cc----HHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHh-hhchhc
Q 006912 93 YIKSELLPCLGA--AD----RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKIC-EDIPQV 165 (626)
Q Consensus 93 ~i~~~L~~~l~~--~~----~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~-~~~~~~ 165 (626)
.|++.|+.+|+. .+ +.+|....++...++.. ..+.|+++...+.... ..++ ..|+.++..+. ...++.
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~-~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~ef 77 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDL-QEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEF 77 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhH
Confidence 578889999963 22 33455555444444332 4689999997777755 3333 34666665555 333333
Q ss_pred cccCCCCCccchhhhhHHHHHHhcCCCC---hHHHHHHH-HHHHHHHhccchHH-HHhHHHH----HHHHHHhcCCCCH-
Q 006912 166 LDSDVPGLAECPINIFLPRLLQFFQSPH---TSLRKLSL-GSVNQFIMLMPSAL-FVSMDQY----LQGLFLLSNDPSA- 235 (626)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~~---~~vr~~al-~~l~~~~~~~~~~~-~~~~~~~----l~~l~~~~~~~~~- 235 (626)
+. +.++.++|.+.+.|.+|. .+....|+ .++...+....... .+.+.++ ++.+..+.+.+.+
T Consensus 78 l~--------~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~ 149 (174)
T PF04510_consen 78 LI--------PFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEV 149 (174)
T ss_pred HH--------HHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 32 456888999999998873 33334444 33344444433221 2333333 4444455555555
Q ss_pred HHHHHHHHHHHHHHhh
Q 006912 236 EVRKLVCAAFNLLIEV 251 (626)
Q Consensus 236 ~~~~~~~~~l~~l~~~ 251 (626)
.....+++-+..++..
T Consensus 150 ~~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 150 GFLRRGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667777777666654
No 229
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.46 E-value=1.4 Score=42.32 Aligned_cols=146 Identities=14% Similarity=0.078 Sum_probs=111.0
Q ss_pred hhHHHHHHHHHHHHHc--cCccchhhhHHHHHHHHhhhcCCC-chHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHH
Q 006912 406 WKDREAAVLALGAIAE--GCIKGLYPHLSEIVAFLIPLLDDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~--~~~~~~~~~l~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~ 482 (626)
|..-.+++.-+..... .......|+-..+...+-+++.-. ..-|-..|+.+...+-+.++.. .....+.-..+
T Consensus 25 WAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~----~L~~dl~i~~~ 100 (307)
T PF04118_consen 25 WADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPD----GLAQDLPIYSP 100 (307)
T ss_pred HHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHH----HHHhhcHHHHH
Confidence 8888888776666655 222122344344566777777543 3578888999998888877654 45556666778
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc
Q 006912 483 GLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (626)
Q Consensus 483 ~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~ 555 (626)
+++..+...+..||..-...+.+..-..+..+.|.++.++..++..+++.+++..+.++..+..+...++..+
T Consensus 101 GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~ 173 (307)
T PF04118_consen 101 GLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKY 173 (307)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhH
Confidence 8888888778899999999888888777888999999999999999998888888888888888888888763
No 230
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.43 E-value=2.7 Score=45.75 Aligned_cols=144 Identities=17% Similarity=0.099 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcc----CChhHHhHHHHHHHHHhhhchhcc------ccCCCCCccchhhhhHHHHHHhcCCCChHHHHH
Q 006912 130 LELLQALVTCLDS----NDINHMEGAMDALSKICEDIPQVL------DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKL 199 (626)
Q Consensus 130 ~~ll~~l~~~l~~----~~~~~r~~~l~~l~~l~~~~~~~~------~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~ 199 (626)
.+++..+..++.+ .++.++.+++.+++.++......- ........+.....+...+.......+...+..
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 6677777777654 356788999999999887755431 111111112334444444444455677788999
Q ss_pred HHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCCh
Q 006912 200 SLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP---SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDD 276 (626)
Q Consensus 200 al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 276 (626)
++++|+++... ..++.+...+.+. ...+|..|+.+|..+....++...+.+-.++. ....+.
T Consensus 510 ~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~-----n~~e~~ 574 (618)
T PF01347_consen 510 YLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFM-----NTTEDP 574 (618)
T ss_dssp HHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH------TTS-H
T ss_pred HHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhc-----CCCCCh
Confidence 99999988521 2244555544433 57899999999998877777654432222221 234567
Q ss_pred HHHHHHHhHHHH
Q 006912 277 DVALEACEFWHS 288 (626)
Q Consensus 277 ~v~~~a~~~l~~ 288 (626)
++|.+|+..+..
T Consensus 575 EvRiaA~~~lm~ 586 (618)
T PF01347_consen 575 EVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 799999855444
No 231
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.36 E-value=6.1 Score=39.36 Aligned_cols=237 Identities=12% Similarity=0.119 Sum_probs=138.9
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCC--CChHHHHHHHHH
Q 006912 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGS 203 (626)
Q Consensus 126 ~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--~~~~vr~~al~~ 203 (626)
.-.|..+.+.+...+-+++..+|.+|+++++.++........ + ....++. .+...+.. .+..=|.+|++.
T Consensus 20 ~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~--~---~~l~id~---~ii~SL~~~~~~~~ER~QALkl 91 (371)
T PF14664_consen 20 DLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQI--L---LKLHIDI---FIIRSLDRDNKNDVEREQALKL 91 (371)
T ss_pred hhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHH--H---HHcCCch---hhHhhhcccCCChHHHHHHHHH
Confidence 356778888887766566689999999999998876543210 0 0001111 23334433 234568999999
Q ss_pred HHHHHhc--cchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchh--hhHHHHHHHHHhhccCCChHHH
Q 006912 204 VNQFIML--MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE--PHLRNLFEYMLQVNKDTDDDVA 279 (626)
Q Consensus 204 l~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~l~~l~~~~~~~~~~~~~~v~ 279 (626)
+..+++. .+..+. ..+++.+.....+++...|..+++++++++-..|+.+. .-+..++..+.. ..-++.
T Consensus 92 iR~~l~~~~~~~~~~---~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d----~~~~~~ 164 (371)
T PF14664_consen 92 IRAFLEIKKGPKEIP---RGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID----GSFSIS 164 (371)
T ss_pred HHHHHHhcCCcccCC---HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh----ccHhHH
Confidence 9998876 333322 25588888888888889999999999999988887643 223344444333 222245
Q ss_pred HHHHhHHHHhhccCCcchhHHhh--hhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCC
Q 006912 280 LEACEFWHSYFEAQLPHENLKEF--LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (626)
Q Consensus 280 ~~a~~~l~~l~~~~~~~~~~~~~--l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (626)
...+..+..+.+.+.....+++. ++.++..... ... + ...++
T Consensus 165 ~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd----~~~--------------------~------------~~~~~ 208 (371)
T PF14664_consen 165 ESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTD----FHY--------------------R------------KIKDD 208 (371)
T ss_pred HHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhh----hhc--------------------c------------ccccc
Confidence 55666667777765554444432 2222222211 000 0 00000
Q ss_pred CccccccccHHHHHHHHHHHHHhhcCcch---HH--hHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHc
Q 006912 358 DDDIVNVWNLRKCSAAALDVLSNVFGDEI---LP--TLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (626)
Q Consensus 358 ~~~~~~~~~~r~~a~~~l~~l~~~~~~~~---~~--~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~ 421 (626)
. . ...-..+..++..+-+..++-+ .+ ..+.-+...+..|. ...|...+..+-.+..
T Consensus 209 ~---~--~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~---~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 209 R---E--LERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN---PEIRKAILDLLFDLLR 269 (371)
T ss_pred h---H--HHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC---HHHHHHHHHHHHHHHC
Confidence 0 0 0123446666777767665411 11 34555666777787 8899999888877755
No 232
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.26 E-value=3.4 Score=42.01 Aligned_cols=141 Identities=15% Similarity=0.129 Sum_probs=89.6
Q ss_pred HHhHHHHHHHhhcCCCC-----CChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcC----------CCchHHHH
Q 006912 387 LPTLMPVIQAKLSASGD-----EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD----------DKFPLIRS 451 (626)
Q Consensus 387 ~~~l~~~l~~~l~~~~~-----~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~----------d~~~~vr~ 451 (626)
+..++|++..++...-. .|-+.-.-.+..+.++..+-.-.+.+|+..++|.++.++- |.++.+|.
T Consensus 237 L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRD 316 (576)
T KOG2549|consen 237 LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRD 316 (576)
T ss_pred HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHH
Confidence 44566666666554311 1134444445555556665555678999999999887653 57889999
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHH
Q 006912 452 ISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN--KRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMA 528 (626)
Q Consensus 452 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~--~~v~~~a~~al~~l~~~~-~~~~~~~l~~i~~~l~~~ 528 (626)
.|+..+..++..+.+. ....-..++..+.+.+.|+. .....-|...|..+-... .--+.|.+......+..-
T Consensus 317 fAA~ll~~i~k~f~~~-----y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~ 391 (576)
T KOG2549|consen 317 FAARLLAQICKNFSTL-----YNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSV 391 (576)
T ss_pred HHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhh
Confidence 9999999999988764 34456778888888888863 344444555555544322 334556677666666555
Q ss_pred Hhhh
Q 006912 529 FGKY 532 (626)
Q Consensus 529 l~~~ 532 (626)
+...
T Consensus 392 l~~~ 395 (576)
T KOG2549|consen 392 LDVE 395 (576)
T ss_pred cccc
Confidence 5443
No 233
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.25 E-value=10 Score=41.49 Aligned_cols=125 Identities=16% Similarity=0.249 Sum_probs=81.8
Q ss_pred chHHhHHHHHHHhhcC-CCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHH
Q 006912 385 EILPTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (626)
Q Consensus 385 ~~~~~l~~~l~~~l~~-~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (626)
......+|.+.+-+.- .+ ..+|-..+.+++-++.... ...+..+|.+-.+|.|+.+.||+.++-.|+++...
T Consensus 964 ~LaKr~~P~lvkeLe~~~~---~aiRnNiV~am~D~C~~YT----am~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~ 1036 (1529)
T KOG0413|consen 964 RLAKRLMPMLVKELEYNTA---HAIRNNIVLAMGDICSSYT----AMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQF 1036 (1529)
T ss_pred HHHHHHHHHHHHHHHhhhH---HHHhcceeeeehhhHHHHH----HHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 4455677877766654 33 6677776666666655432 23445578899999999999999999999888753
Q ss_pred HhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Q 006912 464 IVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLM 526 (626)
Q Consensus 464 ~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~ 526 (626)
-. ...--.++-.++-.+-|.++.+|..|--.++.++..-.+.+ +...+++.+.
T Consensus 1037 ~~--------vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~--f~~~FVe~i~ 1089 (1529)
T KOG0413|consen 1037 GI--------VKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNF--FPLNFVEYII 1089 (1529)
T ss_pred hh--------hhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccc--hHHHHHHHHH
Confidence 21 12222333344444557899999999999999987644433 3344444433
No 234
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.14 E-value=1.9 Score=40.03 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcC------C----CchHHHHHHHHHHHHHHHHHhhhcCCCchhh
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD------D----KFPLIRSISCWTLSRFSKFIVQDIGHQNGRE 475 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~------d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 475 (626)
-..-...+....++..+-.-+..||+.+++|.++.++- + .+..+|..|+..++..+..+++. -..
T Consensus 250 l~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~-----Ykt 324 (450)
T COG5095 250 LEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS-----YKT 324 (450)
T ss_pred HHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh-----hhh
Confidence 34444445555556555444567999999998776552 1 23569999999999999888753 344
Q ss_pred hHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHhhhhH
Q 006912 476 QFEKVLMGLLKRILDTN--KRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQR 534 (626)
Q Consensus 476 ~~~~ll~~l~~~l~d~~--~~v~~~a~~al~~l~~~~-~~~~~~~l~~i~~~l~~~l~~~~~ 534 (626)
.-+.+...+++.+-|.+ ...+.-|...++.+-... +--+.|.+......+.+.+++.++
T Consensus 325 LkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle~~~e 386 (450)
T COG5095 325 LKPRVTRTLLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLEKGNE 386 (450)
T ss_pred hchHHHHHHHHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHhccch
Confidence 45677778888877653 345666777777665443 333445555444444455555443
No 235
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.09 E-value=2.4 Score=39.37 Aligned_cols=157 Identities=6% Similarity=0.044 Sum_probs=79.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCH-HHH-HHHHHHHHHHHHHh---c-ccccc
Q 006912 443 DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK-RVQ-EAACSAFATLEEEA---A-EELAP 516 (626)
Q Consensus 443 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~-~v~-~~a~~al~~l~~~~---~-~~~~~ 516 (626)
...+...|.+|+.++.. ...+.+++|.++..+.+.-. .+. ..-..++..+.... . --+.|
T Consensus 208 dEs~~~~r~aAl~sLr~--------------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdP 273 (450)
T COG5095 208 DESDEQTRDAALESLRN--------------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDP 273 (450)
T ss_pred HHHHHHHHHHHHHHhcc--------------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecH
Confidence 34577888998766532 23344455555544433210 000 11223333333332 1 23479
Q ss_pred hHHHHHHHHHHHHhhh------hH-H---HHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCCCCccchHH
Q 006912 517 RLEIILQHLMMAFGKY------QR-R---NLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLL 586 (626)
Q Consensus 517 ~l~~i~~~l~~~l~~~------~~-~---~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 586 (626)
|+..+++.++.++-.. ++ + .+..+...++.+...++.... ..-+.+...+++.|-.......--..++
T Consensus 274 Y~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Yk--tLkPRvtrTllKafLD~~k~~sT~YGal 351 (450)
T COG5095 274 YLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYK--TLKPRVTRTLLKAFLDREKTESTQYGAL 351 (450)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhh--hhchHHHHHHHHHHHhcccccchhhhhh
Confidence 9999999998887542 11 1 234677777778777775543 2344555566666543221111124667
Q ss_pred HHHHHHHHHhcc-ccccchHHHHHHHHHHH
Q 006912 587 ECFTSIAQALGA-GFTQFAQPVFQRCINII 615 (626)
Q Consensus 587 ~~~~~l~~~~g~-~f~~~~~~i~~~l~~~l 615 (626)
.|+..+.+..-. -..|-++.....+.+-|
T Consensus 352 kgls~l~ke~ir~~i~pn~~~y~rlv~ktl 381 (450)
T COG5095 352 KGLSILSKEVIRTVIKPNADYYVRLVNKTL 381 (450)
T ss_pred hhhhhhchhheeeeeccchHHHHHHHHHHH
Confidence 777666554322 23444444443333333
No 236
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=94.09 E-value=0.24 Score=37.90 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=50.0
Q ss_pred cccccHHHHHHHHHHHHHhhcCc---chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHcc
Q 006912 362 VNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG 422 (626)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~ 422 (626)
.++|.+|..|++.+..+++.++. .+-+.+...+.+.+.+++ .++..+++|+.+|..+...
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~-~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPK-KPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999985 466788888888888763 3588999999999998653
No 237
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.04 E-value=7.1 Score=38.91 Aligned_cols=215 Identities=12% Similarity=0.108 Sum_probs=131.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHH-----hHhhhhh-C-CcHHHHHHHHHHHHHHHhhc-Cc-CchHHH
Q 006912 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS-----ELLPCLG-A-ADRHIRSTVGTIVSVVVQLG-GI-AGWLEL 132 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~-----~L~~~l~-~-~~~~vr~~~~~~l~~i~~~~-~~-~~~~~l 132 (626)
+.+.++|..|.-++|..+.+. +....+.+ .+...|. + ....-|.+|-+.+..+.... ++ ..-..+
T Consensus 36 ~~~~~vraa~yRilRy~i~d~------~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~v 109 (371)
T PF14664_consen 36 SDSKEVRAAGYRILRYLISDE------ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGV 109 (371)
T ss_pred CCcHHHHHHHHHHHHHHHcCH------HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHH
Confidence 334999999988888776542 22222222 3333443 2 34566899999999998773 23 334677
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccc
Q 006912 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (626)
Q Consensus 133 l~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (626)
+..+.....+.+.+.|..++.++.+++-..|+.+. ..+-+..+.+.+.++...+....+.++..+++...
T Consensus 110 vralvaiae~~~D~lr~~cletL~El~l~~P~lv~----------~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 110 VRALVAIAEHEDDRLRRICLETLCELALLNPELVA----------ECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHH----------HcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence 88899989998899999999999999988887542 13335667777777665677777788888776643
Q ss_pred h--HHHH--hHHHHHHHHHHh---cCCCCH--HHHHHHHHHHHHHHhhCccchhhhHH--HHHHHHHhhccCCChHHHHH
Q 006912 213 S--ALFV--SMDQYLQGLFLL---SNDPSA--EVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNKDTDDDVALE 281 (626)
Q Consensus 213 ~--~~~~--~~~~~l~~l~~~---~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~~~~~~~v~~~ 281 (626)
. .+.+ .+..++..+... -...+. +.-..+..++..+....+..+.-... .-+..++..+..+..++|..
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 2 1222 122233333332 011122 23445556666666665543211100 23334445566677778888
Q ss_pred HHhHHHHhhcc
Q 006912 282 ACEFWHSYFEA 292 (626)
Q Consensus 282 a~~~l~~l~~~ 292 (626)
.++.+..+..-
T Consensus 260 Ildll~dllri 270 (371)
T PF14664_consen 260 ILDLLFDLLRI 270 (371)
T ss_pred HHHHHHHHHCC
Confidence 88888887654
No 238
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.96 E-value=3 Score=44.82 Aligned_cols=139 Identities=13% Similarity=0.041 Sum_probs=81.3
Q ss_pred CCChHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHhHhh----hhhCCcHHHHHHHHHHH
Q 006912 46 FPDFNNYLAFILARAE-GKSVEIRQAAGLLLKNNLRTAYKSMS---PSNQQYIKSELLP----CLGAADRHIRSTVGTIV 117 (626)
Q Consensus 46 ~p~~~~~l~~il~~~~-~~~~~~r~~a~~~l~~~i~~~~~~l~---~~~~~~i~~~L~~----~l~~~~~~vr~~~~~~l 117 (626)
.++.+..+..++.... ...+.+|..|.+.+...+.+....-+ +.....+.+.+.. +..+.+...+....++|
T Consensus 391 t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 391 TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 3346777777776422 34567888888888777654332211 1222333333333 33445555566666777
Q ss_pred HHHHhhcCcCchHHHHHHHHHHhc---cCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCC--C
Q 006912 118 SVVVQLGGIAGWLELLQALVTCLD---SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--P 192 (626)
Q Consensus 118 ~~i~~~~~~~~~~~ll~~l~~~l~---~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--~ 192 (626)
|++.. +..++.+...+. ..+..+|..|+.+|..+....+.. +-+.+++.+.+ .
T Consensus 471 GN~g~-------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~---------------v~~~l~~i~~n~~e 528 (574)
T smart00638 471 GNAGH-------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK---------------VQEVLLPIYLNRAE 528 (574)
T ss_pred hccCC-------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH---------------HHHHHHHHHcCCCC
Confidence 75552 334444444443 235679999999999887766542 33345555555 4
Q ss_pred ChHHHHHHHHHHHH
Q 006912 193 HTSLRKLSLGSVNQ 206 (626)
Q Consensus 193 ~~~vr~~al~~l~~ 206 (626)
++++|.+|+..+..
T Consensus 529 ~~EvRiaA~~~lm~ 542 (574)
T smart00638 529 PPEVRMAAVLVLME 542 (574)
T ss_pred ChHHHHHHHHHHHh
Confidence 67899999876643
No 239
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=93.92 E-value=0.12 Score=32.51 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=26.2
Q ss_pred HHHHHhhhcCCCchHHHHHHHHHHHHHH
Q 006912 434 IVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (626)
Q Consensus 434 l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (626)
.+|.++..+.++++.|+..|+|++++++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999986
No 240
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.85 E-value=11 Score=40.36 Aligned_cols=286 Identities=14% Similarity=0.167 Sum_probs=158.5
Q ss_pred CHHHHHHHHHHHHhhcCCCC-HH------HHHHHHHHHHH-HhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 006912 10 QEQGFNEICRLLEQQISPSS-TA------DKSQIWQQLQQ-YSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT 81 (626)
Q Consensus 10 ~~~~~~~l~~~l~~~~s~d~-~~------~r~~a~~~L~~-~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~ 81 (626)
|++........+-.+.+.|. ++ +-..--.++.. |-++++.+..++..+. ..+-.+|..|..++...++.
T Consensus 76 D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e---~~DF~VR~~aIqLlsalls~ 152 (970)
T KOG0946|consen 76 DPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE---EFDFHVRLYAIQLLSALLSC 152 (970)
T ss_pred CHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHH---hhchhhhhHHHHHHHHHHhc
Confidence 55555554454444444442 10 12222233433 4568888888877664 77899999999999888765
Q ss_pred hhccCChhHHHHHH------HhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc-C---chHHHHHHHHHHhcc----CChhH
Q 006912 82 AYKSMSPSNQQYIK------SELLPCLGAADRHIRSTVGTIVSVVVQLGGI-A---GWLELLQALVTCLDS----NDINH 147 (626)
Q Consensus 82 ~~~~l~~~~~~~i~------~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~-~---~~~~ll~~l~~~l~~----~~~~~ 147 (626)
+ +.+.+..|. ..++..|.+.-+.||+.+...+..+.+..+. + .+...+..|+..+.. +..-+
T Consensus 153 r----~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIV 228 (970)
T KOG0946|consen 153 R----PTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIV 228 (970)
T ss_pred C----CHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 3 344444333 4678888899999999999999888876432 1 234455666666643 22357
Q ss_pred HhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcC-----C----CChHHHHHHHHHHHHHHhcc--c---h
Q 006912 148 MEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-----S----PHTSLRKLSLGSVNQFIMLM--P---S 213 (626)
Q Consensus 148 r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-----~----~~~~vr~~al~~l~~~~~~~--~---~ 213 (626)
.+-++..+..+.+.....- .+|. -...+|.+...|. | ....-|..-+.++..+++.+ | .
T Consensus 229 veDCL~ll~NLLK~N~SNQ-----~~Fr--E~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~ 301 (970)
T KOG0946|consen 229 VEDCLILLNNLLKNNISNQ-----NFFR--EGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTS 301 (970)
T ss_pred HHHHHHHHHHHHhhCcchh-----hHHh--ccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcH
Confidence 7788888888887654320 1110 1445666664442 2 12234444444444444332 2 1
Q ss_pred HHHH----hH--HHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhCcc-------chhhhHH----HHHHHHHh-hccC
Q 006912 214 ALFV----SM--DQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPS-------FLEPHLR----NLFEYMLQ-VNKD 273 (626)
Q Consensus 214 ~~~~----~~--~~~l~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~-------~~~~~l~----~l~~~~~~-~~~~ 273 (626)
.... .+ ..++..|+..+-++ ..+++..++-++...+..... ...|+.+ .|+-.++. ....
T Consensus 302 ~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~ 381 (970)
T KOG0946|consen 302 SITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEK 381 (970)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhcc
Confidence 1111 11 14566777765443 346777777777666644321 1112222 22222222 2344
Q ss_pred CChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHh
Q 006912 274 TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLL 311 (626)
Q Consensus 274 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~ 311 (626)
.....|.+++.|+..+.-. ....-+.++..++|...
T Consensus 382 q~~~lRcAv~ycf~s~l~d--N~~gq~~~l~tllp~~~ 417 (970)
T KOG0946|consen 382 QPFSLRCAVLYCFRSYLYD--NDDGQRKFLKTLLPSST 417 (970)
T ss_pred CCchHHHHHHHHHHHHHhc--chhhHHHHHHHHhhhhc
Confidence 4566788888888776543 22333455666666543
No 241
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.85 E-value=25 Score=44.57 Aligned_cols=162 Identities=18% Similarity=0.159 Sum_probs=101.7
Q ss_pred HHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhc
Q 006912 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (626)
Q Consensus 131 ~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (626)
-+++.|.+++...+..++..+..++..+.......+.+..++.--.....+++.+.+..-++.+.-|..++..+..++..
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 45788999999889999999999999988776654432222211244677888888888888888888888888888877
Q ss_pred cchH-HHHhHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHHHhh-----Cccchh-hhHHHHHHHHHhhccCCChHHH
Q 006912 211 MPSA-LFVSMDQYLQGLFLLSNDPSAEVR----KLVCAAFNLLIEV-----RPSFLE-PHLRNLFEYMLQVNKDTDDDVA 279 (626)
Q Consensus 211 ~~~~-~~~~~~~~l~~l~~~~~~~~~~~~----~~~~~~l~~l~~~-----~~~~~~-~~l~~l~~~~~~~~~~~~~~v~ 279 (626)
.|.. +.+...++++.++..+.+-..++. ..+-.++..+... ..+... .....++..+...+.++...||
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 7732 233444666666665544222111 1222222222211 111111 2233455555555667777899
Q ss_pred HHHHhHHHHhhcc
Q 006912 280 LEACEFWHSYFEA 292 (626)
Q Consensus 280 ~~a~~~l~~l~~~ 292 (626)
..+.+.+..+++.
T Consensus 1144 ~~~~~~L~~i~~~ 1156 (3550)
T KOG0889|consen 1144 EFSQKLLRLISEL 1156 (3550)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888776
No 242
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.62 E-value=1.8 Score=36.38 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccch--HHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhc
Q 006912 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAVG 552 (626)
Q Consensus 476 ~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~--l~~i~~~l~~~l~~-~~~~~~~~~~~~l~~i~~~~~ 552 (626)
.-...+..+.+.+.+.++.|+..|+..|..++++||..+... -..++..|..++.. .+..++..+++.+......++
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 345677888899999999999999999999999999765422 34666667777766 466778889999999988887
Q ss_pred cc
Q 006912 553 FE 554 (626)
Q Consensus 553 ~~ 554 (626)
.+
T Consensus 114 ~~ 115 (144)
T cd03568 114 ND 115 (144)
T ss_pred CC
Confidence 43
No 243
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.60 E-value=6 Score=36.61 Aligned_cols=187 Identities=19% Similarity=0.133 Sum_probs=103.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCC-ChHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhh----
Q 006912 27 PSSTADKSQIWQQLQQYSQFP-DFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLP---- 100 (626)
Q Consensus 27 ~d~~~~r~~a~~~L~~~~~~p-~~~~~l~~il~~~-~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~---- 100 (626)
++++ .....-+.|-++..+. ...+..++++... ++.....+..+..++. ..|..- +-....++..+..
T Consensus 13 ~~~~-~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~----~lw~~~-~r~f~~L~~~L~~~~~r 86 (234)
T PF12530_consen 13 SDPE-LQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLT----LLWKAN-DRHFPFLQPLLLLLILR 86 (234)
T ss_pred CChH-HHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHH----HHHHhC-chHHHHHHHHHHHHHhh
Confidence 4555 6677777777765433 4444444444321 1333344444444443 445431 1122334433333
Q ss_pred hh---h--CCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHh-ccCChhHHhHHHHHHHHHhhhchhccccCCCCCc
Q 006912 101 CL---G--AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (626)
Q Consensus 101 ~l---~--~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l-~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~ 174 (626)
.. . +.........+..+..+++..+. .|.++++.+..++ .+.++..+..+++.+..+++.---.
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd--------- 156 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD--------- 156 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc---------
Confidence 11 1 22344555667788888888644 9999999999999 7888889999999999999432211
Q ss_pred cchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccc------hHHHHhHHHHHHHHHHhcCCCCH
Q 006912 175 ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP------SALFVSMDQYLQGLFLLSNDPSA 235 (626)
Q Consensus 175 ~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~------~~~~~~~~~~l~~l~~~~~~~~~ 235 (626)
....+..+..-++. +.|-..++.+.+++...| +.......+++..+++.....+.
T Consensus 157 ---~~s~w~vl~~~l~~---~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 157 ---FYSAWKVLQKKLSL---DYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred ---HHHHHHHHHHhcCC---ccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 23333334444422 233334444444443333 22333445778888888776554
No 244
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.57 E-value=2.1 Score=37.97 Aligned_cols=124 Identities=17% Similarity=0.248 Sum_probs=83.5
Q ss_pred hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhcc---chHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCcc
Q 006912 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM---PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (626)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 254 (626)
+..+++.+++.+.+++..+|..|++.+..++..- |. ..+|.++.+..|+++.+|..|...+..+.++++.
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 4677888888999999999999999999888641 32 3478888998999999999999999999999998
Q ss_pred chhhhHHHHHHHHHhh----ccCCChHH---HHHHHhHHHHhhccCCcchhHHhhhhhhHHHH
Q 006912 255 FLEPHLRNLFEYMLQV----NKDTDDDV---ALEACEFWHSYFEAQLPHENLKEFLPRLVPVL 310 (626)
Q Consensus 255 ~~~~~l~~l~~~~~~~----~~~~~~~v---~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l 310 (626)
.+.....+-+...... ..+..... ....+..|.++++. ....-+.++..++..+
T Consensus 79 ~v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~--~r~~R~~Fl~~l~k~f 139 (187)
T PF12830_consen 79 LVESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRS--NRKSRRKFLKSLLKQF 139 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhc--ccHhHHHHHHHHHHHH
Confidence 8765444333332222 12221111 34445566776663 2233334455544443
No 245
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.31 E-value=2.2 Score=35.48 Aligned_cols=76 Identities=8% Similarity=0.051 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccch--HHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHH
Q 006912 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGK------YQRRNLRIVYDAIGTLAD 549 (626)
Q Consensus 478 ~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~--l~~i~~~l~~~l~~------~~~~~~~~~~~~l~~i~~ 549 (626)
...+..+.+.++++++.++..|+..|..++++||..+... -..++..+.+++.. ....++..+++.+.....
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999999999999866432 23555556666642 345777889999999988
Q ss_pred Hhcc
Q 006912 550 AVGF 553 (626)
Q Consensus 550 ~~~~ 553 (626)
+++.
T Consensus 117 ~f~~ 120 (139)
T cd03567 117 ELPH 120 (139)
T ss_pred Hhcc
Confidence 8764
No 246
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=93.31 E-value=9.2 Score=37.85 Aligned_cols=218 Identities=14% Similarity=0.077 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHhc---CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHH
Q 006912 32 DKSQIWQQLQQYSQ---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRH 108 (626)
Q Consensus 32 ~r~~a~~~L~~~~~---~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~ 108 (626)
.|-...+.|..+.. .+.....+..++.+ +.++.....+...|...... ++.+.-+.+.+.+..++++....
T Consensus 3 ~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~K--E~nE~aL~~~l~al~~~~~~----~~~~~~~~~~~~~~kGl~~kk~~ 76 (339)
T PF12074_consen 3 QRVLHASMLSSLPSSSLSSKIVQGLSPLLSK--ESNEAALSALLSALFKHLFF----LSSELPKKVVDAFKKGLKDKKPP 76 (339)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHH----hCcCCCHHHHHHHHHHhcCCCCc
Confidence 45555555555443 23345566666765 77777777776666544433 33444456777888899999888
Q ss_pred HHHHHHHHHHHHHh----hcCcCchHHHHHHHHHHh----ccCChhHHhHHHHHHHHHhhh---chhccccC---CCCCc
Q 006912 109 IRSTVGTIVSVVVQ----LGGIAGWLELLQALVTCL----DSNDINHMEGAMDALSKICED---IPQVLDSD---VPGLA 174 (626)
Q Consensus 109 vr~~~~~~l~~i~~----~~~~~~~~~ll~~l~~~l----~~~~~~~r~~~l~~l~~l~~~---~~~~~~~~---~~~~~ 174 (626)
+|+.-..+++.++. .........++|.+.+.+ +++.+....+.+.+-..++.. ........ ...+.
T Consensus 77 vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 156 (339)
T PF12074_consen 77 VRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLA 156 (339)
T ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhc
Confidence 99999999999886 223344455666666655 444333221111111111110 00000000 00000
Q ss_pred -c-chhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHh-HHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHH
Q 006912 175 -E-CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLI 249 (626)
Q Consensus 175 -~-~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~--~~~~~~~~~~~l~~l~ 249 (626)
+ +..--+-+.+++-+ .+.+...-.++++..+....+....+. ...+-+.++.++..+ ..++|+.+...+..+.
T Consensus 157 ~~~kps~ll~~kvyskl--~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~ 234 (339)
T PF12074_consen 157 LDPKPSFLLSEKVYSKL--ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLY 234 (339)
T ss_pred cCCCcchhcCHHHHhcc--CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 0 00000111222221 233444556666666665544433333 245677777777766 7899999999999999
Q ss_pred hhCccchh
Q 006912 250 EVRPSFLE 257 (626)
Q Consensus 250 ~~~~~~~~ 257 (626)
...+..+.
T Consensus 235 ~~~~~~l~ 242 (339)
T PF12074_consen 235 ASNPELLS 242 (339)
T ss_pred HhChHHHH
Confidence 98887644
No 247
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=93.06 E-value=9.4 Score=37.26 Aligned_cols=138 Identities=13% Similarity=0.151 Sum_probs=91.0
Q ss_pred HHHHHHHHHhhcCc-------chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccch----hhhHHHHHHHHh
Q 006912 371 SAAALDVLSNVFGD-------EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL----YPHLSEIVAFLI 439 (626)
Q Consensus 371 a~~~l~~l~~~~~~-------~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~----~~~l~~l~~~l~ 439 (626)
...++..+...+++ .++..++.....++++...+-|..|..-...+..+...+...+ .+.+..++..+.
T Consensus 92 vL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~ 171 (319)
T PF08767_consen 92 VLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIV 171 (319)
T ss_dssp HHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555544 2233444444556655433348899999999999988875444 245677889999
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHhhh---cCCCchhhhHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHH
Q 006912 440 PLLDDKFPLIRSISCWTLSRFSKFIVQD---IGHQNGREQFEKVLMGLLKRILDTNK-RVQEAACSAFATLEE 508 (626)
Q Consensus 440 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~~~~ll~~l~~~l~d~~~-~v~~~a~~al~~l~~ 508 (626)
.+++|+++.|...++.++..+.+.+... ........|...++..++..+.|+.+ ..-..-+..|..++.
T Consensus 172 wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 172 WGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877651 00112456667788888888887753 233334455666654
No 248
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.98 E-value=10 Score=40.72 Aligned_cols=128 Identities=15% Similarity=0.098 Sum_probs=76.5
Q ss_pred HhHhhhhhC----CcHHHHHHHHHHHHHHHhhcC--cCch-----HHHHHHHHHHhc----cCChhHHhHHHHHHHHHhh
Q 006912 96 SELLPCLGA----ADRHIRSTVGTIVSVVVQLGG--IAGW-----LELLQALVTCLD----SNDINHMEGAMDALSKICE 160 (626)
Q Consensus 96 ~~L~~~l~~----~~~~vr~~~~~~l~~i~~~~~--~~~~-----~~ll~~l~~~l~----~~~~~~r~~~l~~l~~l~~ 160 (626)
+.+++++.+ ....+|..+..+++.++.... ...+ .++++.+.+.+. ..+...+...+.+||.+-.
T Consensus 396 ~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 475 (574)
T smart00638 396 KALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH 475 (574)
T ss_pred HHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC
Confidence 344444443 366789998889998887532 2222 456666665553 3455566677777765422
Q ss_pred hchhccccCCCCCccchhhhhHHHHHHhcC---CCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHH
Q 006912 161 DIPQVLDSDVPGLAECPINIFLPRLLQFFQ---SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEV 237 (626)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~il~~l~~~l~---~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 237 (626)
...++.+...+. ..+..+|.+|+.+|..+....|....+.+ ++.+.+. ..++++
T Consensus 476 ------------------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l---~~i~~n~--~e~~Ev 532 (574)
T smart00638 476 ------------------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVL---LPIYLNR--AEPPEV 532 (574)
T ss_pred ------------------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH---HHHHcCC--CCChHH
Confidence 223333333333 34578999999999988877666554433 3333222 245778
Q ss_pred HHHHHHHHH
Q 006912 238 RKLVCAAFN 246 (626)
Q Consensus 238 ~~~~~~~l~ 246 (626)
|..|+..|.
T Consensus 533 RiaA~~~lm 541 (574)
T smart00638 533 RMAAVLVLM 541 (574)
T ss_pred HHHHHHHHH
Confidence 887776554
No 249
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=92.83 E-value=0.74 Score=39.08 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCcc----------------chhhh
Q 006912 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK----------------GLYPH 430 (626)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~----------------~~~~~ 430 (626)
+|...+.++..++..--+.-.+.+++.+.+.+++ + .......+..+..+.+...+ .+...
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~---~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-S---PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-T---HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-c---hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 5677788888887776444456677777777766 3 67788888888877765532 01223
Q ss_pred HHHHHHHHhhhcCCC----chHHHHHHHHHHHHHHHHHhhhcCCCchhhhH-HHHHHHHHHHhccCCHHHHHHHHHHH
Q 006912 431 LSEIVAFLIPLLDDK----FPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAF 503 (626)
Q Consensus 431 l~~l~~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~ll~~l~~~l~d~~~~v~~~a~~al 503 (626)
.+.++..+...+... +..+...++.+++.+..+.+.. ... .++++.++..+++ +..+..|+.+|
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~-------~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIE-------LIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH-------HHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH-------HhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 344555555555432 2888999999999999877532 122 3478888888854 44488888775
No 250
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=92.82 E-value=16 Score=39.19 Aligned_cols=98 Identities=14% Similarity=0.111 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHHccCcc---chhhhH---HHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHH
Q 006912 406 WKDREAAVLALGAIAEGCIK---GLYPHL---SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK 479 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~---~~~~~l---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 479 (626)
..+-+++.-+|-.++.+... .+...+ +..+|.++..+..++..|..+++.+|.+++..... ....-..
T Consensus 533 ~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn------k~ligk~ 606 (717)
T KOG1048|consen 533 DNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN------KELIGKY 606 (717)
T ss_pred hHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh------hhhhhcc
Confidence 55666666677666665422 111111 23568889999999999999999999999976532 1222356
Q ss_pred HHHHHHHHhccCC------HHHHHHHHHHHHHHHHH
Q 006912 480 VLMGLLKRILDTN------KRVQEAACSAFATLEEE 509 (626)
Q Consensus 480 ll~~l~~~l~d~~------~~v~~~a~~al~~l~~~ 509 (626)
.|+.|+.+|.+.. ..+...+|.+|.+++..
T Consensus 607 a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~ 642 (717)
T KOG1048|consen 607 AIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK 642 (717)
T ss_pred hHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence 7888888887642 45667778888888743
No 251
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.81 E-value=0.64 Score=37.06 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=52.1
Q ss_pred HHHHHHHHHHh-ccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 006912 130 LELLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (626)
Q Consensus 130 ~~ll~~l~~~l-~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (626)
-+++..|.+.+ .+.++.+...|+.-++.+++..|..-. +. .--..=..+++++++++++||..|+.|+..++
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~-----ii--~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRN-----II--EKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHH-----HH--HHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHH-----HH--HhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35677888888 445777888899999999998876311 00 01234456889999999999999999998876
Q ss_pred h
Q 006912 209 M 209 (626)
Q Consensus 209 ~ 209 (626)
.
T Consensus 115 ~ 115 (119)
T PF11698_consen 115 V 115 (119)
T ss_dssp H
T ss_pred H
Confidence 4
No 252
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=12 Score=43.25 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=64.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhCc-cchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHh
Q 006912 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKE 301 (626)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 301 (626)
+..+.+-+.-.++-.+..|+..+..++.... +...+.++.......++..+.+..||..+.+++..+... ....+.|
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~--lkk~lsp 120 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTK--LKKKLSP 120 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH--HHHHhhH
Confidence 4555555566788899999999999886533 333333444444555677899999999999999988765 6677889
Q ss_pred hhhhhHHHHhhh
Q 006912 302 FLPRLVPVLLSN 313 (626)
Q Consensus 302 ~l~~li~~l~~~ 313 (626)
++..++|..+-.
T Consensus 121 ~LK~li~~wl~~ 132 (1312)
T KOG0803|consen 121 FLKSLIPPWLGG 132 (1312)
T ss_pred HHHhhhhhhhhe
Confidence 999998886543
No 253
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=92.69 E-value=2.7 Score=34.87 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccc-hHH-HHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHH
Q 006912 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAP-RLE-IILQHLMMAFGK---YQRRNLRIVYDAIGTLADA 550 (626)
Q Consensus 476 ~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~-~l~-~i~~~l~~~l~~---~~~~~~~~~~~~l~~i~~~ 550 (626)
.-...+..|.+.+++++|.++..|+..|..++++||..+.. +.. .++..+..++.. .+..++..+++.+......
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34667788888899999999999999999999999986632 222 555556666654 3556788999999999988
Q ss_pred hccc
Q 006912 551 VGFE 554 (626)
Q Consensus 551 ~~~~ 554 (626)
++..
T Consensus 114 f~~~ 117 (133)
T cd03561 114 FGGH 117 (133)
T ss_pred hcCC
Confidence 8764
No 254
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.65 E-value=1.5 Score=45.62 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=85.6
Q ss_pred HHhHhhhhhCCcHHHHHHHHHHHHHHHhhc---C------cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhc
Q 006912 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLG---G------IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (626)
Q Consensus 95 ~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~---~------~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~ 165 (626)
.+.+.++|.+++-.+|-...++.++++... + ++..+.++..+.+.+.+..|-+|-.++..+..++......
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 345566777888899999999888887542 1 2355677788888889999999999999999998866544
Q ss_pred cccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccc
Q 006912 166 LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (626)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (626)
.. .-..+.......++|.+.-||+.|++.+..+...-|
T Consensus 381 ~~---------~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 381 VG---------RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred cc---------hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 32 236778888899999999999999999988876555
No 255
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.53 E-value=0.68 Score=36.93 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=50.5
Q ss_pred HHHHHHhhhcC-CCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 006912 433 EIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (626)
Q Consensus 433 ~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (626)
.++..|...+. +.++.+...||.=||.++++.+. ....+ ...-..++..|.++++.||..|+.|+..+.-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChh------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35666666663 44788888899999999998864 33333 2334567788889999999999999998864
No 256
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.49 E-value=3.8 Score=34.44 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH--HHHHHHHhhhcCC-Cch
Q 006912 371 SAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDD-KFP 447 (626)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~l~~~l~~~l~d-~~~ 447 (626)
.....+.+... ..--...+..+.+.+++++ +.+..-|+..+..++.+|+..+...+ ...+..+...+.+ .++
T Consensus 21 il~icD~I~~~--~~~~k~a~ral~KRl~~~n---~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~ 95 (144)
T cd03568 21 ILDVCDKVKSD--ENGAKDCLKAIMKRLNHKD---PNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHP 95 (144)
T ss_pred HHHHHHHHhcC--CccHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCH
Confidence 44444544433 1222367778888898888 99999999999999999986553222 2244555555555 789
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 006912 448 LIRSISCWTLSRFSKFIVQ 466 (626)
Q Consensus 448 ~vr~~a~~~l~~l~~~~~~ 466 (626)
.|+..++..+..++..+..
T Consensus 96 ~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 96 TVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 9999999999999988864
No 257
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=92.35 E-value=0.32 Score=30.56 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=26.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 006912 479 KVLMGLLKRILDTNKRVQEAACSAFATLE 507 (626)
Q Consensus 479 ~ll~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (626)
..+|.|++.+.++++.++..|+++|++++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999986
No 258
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=92.11 E-value=12 Score=36.83 Aligned_cols=175 Identities=15% Similarity=0.061 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHh
Q 006912 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (626)
Q Consensus 109 vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 188 (626)
.+..+..++..|... -+..+.+.+++..+.....++..|..++...+.....++-+.+ ......++.++.-
T Consensus 42 ~~~~g~~l~~~iL~~--------~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~f-d~~~~~l~kll~~ 112 (330)
T PF11707_consen 42 FQSYGLELIRSILQN--------HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSF-DFSLKSLPKLLTP 112 (330)
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhc-CCchhhHHHHhcc
Confidence 555555555555532 2788888898888888889999999998844432211110001 0112233333321
Q ss_pred cC-C-CC--------hHHHHHHHHHHHHHHhccchHHHHh-HH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccc
Q 006912 189 FQ-S-PH--------TSLRKLSLGSVNQFIMLMPSALFVS-MD--QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (626)
Q Consensus 189 l~-~-~~--------~~vr~~al~~l~~~~~~~~~~~~~~-~~--~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 255 (626)
=. + .. +.+|...++.+.+++...+...... +. .++..+++.+..+..++...++++|..-+-..+ .
T Consensus 113 ~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~-~ 191 (330)
T PF11707_consen 113 RKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS-S 191 (330)
T ss_pred ccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC-C
Confidence 11 0 11 2899999999999988776554432 21 347778887777777888888888876543332 1
Q ss_pred hhhhH------HHHHHHHHhhccCCC----hHHHHHHHhHHHHhhccC
Q 006912 256 LEPHL------RNLFEYMLQVNKDTD----DDVALEACEFWHSYFEAQ 293 (626)
Q Consensus 256 ~~~~l------~~l~~~~~~~~~~~~----~~v~~~a~~~l~~l~~~~ 293 (626)
+.+.. +..+..+.......+ ..++..+.+|+..+|..+
T Consensus 192 v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 192 VSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCC
Confidence 11111 122333333333333 478899999999988763
No 259
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.95 E-value=8.6 Score=34.14 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 006912 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (626)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (626)
+.+++.+.+++.+++..+|..|+..+..+.+.- ... =...+|.++....|+++.+|..|...+..+.+
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG--Lvn----------P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQG--LVN----------PKQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC--CCC----------hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 566788888888888889999998888776621 111 15678888888888999999999998888877
Q ss_pred ccchHHHHh
Q 006912 210 LMPSALFVS 218 (626)
Q Consensus 210 ~~~~~~~~~ 218 (626)
.-+..+...
T Consensus 75 K~~s~v~~~ 83 (187)
T PF12830_consen 75 KHESLVESR 83 (187)
T ss_pred HhHHHHHHH
Confidence 665554433
No 260
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=91.81 E-value=4.9 Score=33.34 Aligned_cols=106 Identities=13% Similarity=0.053 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHH-HHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE-KVLMGL 484 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~ll~~l 484 (626)
|..-...+..+..- ...-...+..|...+++++|.++..|+..+..+.+.++.. .+..+.. ..+..+
T Consensus 18 ~~~il~icd~I~~~--------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~----f~~~i~s~~fl~~l 85 (133)
T cd03561 18 WALNLELCDLINLK--------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP----FHLQVADKEFLLEL 85 (133)
T ss_pred HHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH----HHHHHhhHHHHHHH
Confidence 77666666555433 1223446788889999999999999999999999988652 2333332 455556
Q ss_pred HHHhcc---CCHHHHHHHHHHHHHHHHHhccc--ccchHHHHHH
Q 006912 485 LKRILD---TNKRVQEAACSAFATLEEEAAEE--LAPRLEIILQ 523 (626)
Q Consensus 485 ~~~l~d---~~~~v~~~a~~al~~l~~~~~~~--~~~~l~~i~~ 523 (626)
.+.+.. .++.|+..+...+......++.. -.+++..+..
T Consensus 86 ~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~~~~~~~~~~~y~ 129 (133)
T cd03561 86 VKIAKNSPKYDPKVREKALELILAWSESFGGHSEDLPGIEDAYK 129 (133)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence 666654 36899999999999999888642 2344444433
No 261
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.49 E-value=18 Score=40.51 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=91.2
Q ss_pred HHHHHHHHHHh-----ccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHH
Q 006912 130 LELLQALVTCL-----DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (626)
Q Consensus 130 ~~ll~~l~~~l-----~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l 204 (626)
.+++..+...+ .|-++.+|.-++.-|+..+..+|+.+.+ ..++..+.-.|.|.+..||..++++|
T Consensus 281 ~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~----------dsYLKYiGWtLsDk~~~VRl~~lkaL 350 (1048)
T KOG2011|consen 281 ESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS----------DSYLKYIGWTLSDKNGTVRLRCLKAL 350 (1048)
T ss_pred HHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc----------chHHHHhcceeecCccHHHHHHHHHH
Confidence 34555555543 4668899999999999999999987643 55677888899999999999999999
Q ss_pred HHHHhccchHHHHhHH----HHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHH
Q 006912 205 NQFIMLMPSALFVSMD----QYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVA 279 (626)
Q Consensus 205 ~~~~~~~~~~~~~~~~----~~l~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~ 279 (626)
..+.+.- .+.+.+. -+=..++... .|.+..||...+..+..... +..+.. .=+..+..++-+.+..++
T Consensus 351 ~~L~e~~--~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~--~g~L~d---~di~~Vy~Li~d~~r~~~ 423 (1048)
T KOG2011|consen 351 IKLYEKD--EDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSS--SGLLSD---KDILIVYSLIYDSNRRVA 423 (1048)
T ss_pred HHHHhcc--ccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhc--ccccCh---hHHHHHHHHHhccCcchH
Confidence 9988762 2222222 2234455555 34455566555544443322 222221 122234455667777788
Q ss_pred HHHHhHHHH
Q 006912 280 LEACEFWHS 288 (626)
Q Consensus 280 ~~a~~~l~~ 288 (626)
.+|..++..
T Consensus 424 ~aa~~fl~~ 432 (1048)
T KOG2011|consen 424 VAAGEFLYK 432 (1048)
T ss_pred HHHHHHHHH
Confidence 888877665
No 262
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=90.85 E-value=2.1 Score=35.94 Aligned_cols=78 Identities=15% Similarity=0.087 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccch--HHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhcc
Q 006912 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAVGF 553 (626)
Q Consensus 477 ~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~--l~~i~~~l~~~l~~-~~~~~~~~~~~~l~~i~~~~~~ 553 (626)
-...+..+.+.+++.++.++..|+..|..++++||..+... -..+++.|..++.. ....++..+++.+......++.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 45677888889999999999999999999999998765321 23555555655553 4456777889999888888765
Q ss_pred c
Q 006912 554 E 554 (626)
Q Consensus 554 ~ 554 (626)
+
T Consensus 119 ~ 119 (142)
T cd03569 119 K 119 (142)
T ss_pred C
Confidence 4
No 263
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=89.96 E-value=11 Score=31.69 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccch--HHHHHHHHHHHHhhhh-HH---HHHHHHHHHHHH
Q 006912 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGKYQ-RR---NLRIVYDAIGTL 547 (626)
Q Consensus 474 ~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~--l~~i~~~l~~~l~~~~-~~---~~~~~~~~l~~i 547 (626)
...-...+..+-+.+.+.+|.++..|+..+..++++||..+... -..++..|..++.... .. +++.+++.|...
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 34457788889999999999999999999999999998766432 2356667777666543 22 677899999999
Q ss_pred HHHhcc
Q 006912 548 ADAVGF 553 (626)
Q Consensus 548 ~~~~~~ 553 (626)
...++.
T Consensus 117 ~~~f~~ 122 (140)
T PF00790_consen 117 AEAFKS 122 (140)
T ss_dssp HHHTTT
T ss_pred HHHHCC
Confidence 888854
No 264
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=89.88 E-value=22 Score=35.29 Aligned_cols=227 Identities=11% Similarity=0.053 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC---------CChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 006912 10 QEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQF---------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR 80 (626)
Q Consensus 10 ~~~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~---------p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~ 80 (626)
|.....++.++|.....+| .+....+.|....++ .+....+++++.. -.+..-+.=+..++|+.-
T Consensus 221 d~sl~~~l~~ll~~~v~~d---~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~--~k~~t~k~d~~~l~k~~~- 294 (604)
T KOG4500|consen 221 DCSLVFMLLQLLPSMVRED---IDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRN--MKDFTKKTDMLNLFKRIA- 294 (604)
T ss_pred cchHHHHHHHHHHHhhccc---hhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHh--cccccchHHHHHHHHhhh-
Confidence 4445567788888877777 555555555443221 2244555555543 111111222222333211
Q ss_pred Hhhc--cCChhHH------HHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCc---hHHHHHHHHHHhc-----cCC
Q 006912 81 TAYK--SMSPSNQ------QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG---WLELLQALVTCLD-----SND 144 (626)
Q Consensus 81 ~~~~--~l~~~~~------~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~---~~~ll~~l~~~l~-----~~~ 144 (626)
..-- ...++.. .++...+..++.+.+.....+.+-++|++++.+..-. -+++++.++.++. +++
T Consensus 295 el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgn 374 (604)
T KOG4500|consen 295 ELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGN 374 (604)
T ss_pred hHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 1000 0111111 1266677888888899999999999999999874211 1667777777774 346
Q ss_pred hhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccch---HHHHhHHH
Q 006912 145 INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS---ALFVSMDQ 221 (626)
Q Consensus 145 ~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~---~~~~~~~~ 221 (626)
...+++++.+|+.+.--.+... .+ .-.++.+.++..+....+.|.-.-+..+.-+....+. ++..+ +.
T Consensus 375 V~~qhA~lsALRnl~IPv~nka--~~------~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn-~~ 445 (604)
T KOG4500|consen 375 VERQHACLSALRNLMIPVSNKA--HF------APAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKN-PE 445 (604)
T ss_pred chhHHHHHHHHHhccccCCchh--hc------cccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcC-HH
Confidence 6778899999988876554321 11 1244566677777776666666555555555544331 11111 23
Q ss_pred HHHHHHHhcCCCCHH-HHHHHHHHHHHHHhh
Q 006912 222 YLQGLFLLSNDPSAE-VRKLVCAAFNLLIEV 251 (626)
Q Consensus 222 ~l~~l~~~~~~~~~~-~~~~~~~~l~~l~~~ 251 (626)
++..+...-..++.. +..+..+.+..++.+
T Consensus 446 l~ekLv~Wsks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 446 LFEKLVDWSKSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred HHHHHHHhhhCCccchhhhhhhHHHHHHHHh
Confidence 455555554444443 555666666666665
No 265
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=89.88 E-value=2 Score=32.38 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=55.3
Q ss_pred hhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006912 177 PINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (626)
Q Consensus 177 ~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~ 246 (626)
....++.++...+.+ ++.++|...+.|+..++......+...-+.++..+-....++++.+...|++++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 357788888887654 6789999999999999988776666666667777777778888888888888764
No 266
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=89.82 E-value=8.8 Score=31.81 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccch--HHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHH
Q 006912 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGKYQR--RNLRIVYDAIGTLADA 550 (626)
Q Consensus 475 ~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~--l~~i~~~l~~~l~~~~~--~~~~~~~~~l~~i~~~ 550 (626)
..-...+..+.+.+++++|.++..|+..|..++++||..+... -..++..|..++..... .++..+++.+......
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 3346677888899999999999999999999999999866432 23566666666665432 3677899999999888
Q ss_pred hcc
Q 006912 551 VGF 553 (626)
Q Consensus 551 ~~~ 553 (626)
++.
T Consensus 113 f~~ 115 (133)
T smart00288 113 FKN 115 (133)
T ss_pred HcC
Confidence 865
No 267
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.65 E-value=73 Score=40.92 Aligned_cols=167 Identities=13% Similarity=0.140 Sum_probs=106.4
Q ss_pred HHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhc----C-------cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhh
Q 006912 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLG----G-------IAGWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (626)
Q Consensus 93 ~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~----~-------~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~ 161 (626)
.+...|...+..++..++.....++..+.... + ....+.+++.+.+++-++.|..|.+|+..+..+++.
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 44556777778888888888888888876541 1 234578899999999999999999999999999988
Q ss_pred chhccccCCCCCccchhhhhHHHHHHhcCCCChHHHH----HHHHHHHHHHhc----c--chHHHHhHHHHHHHHHHhcC
Q 006912 162 IPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRK----LSLGSVNQFIML----M--PSALFVSMDQYLQGLFLLSN 231 (626)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~----~al~~l~~~~~~----~--~~~~~~~~~~~l~~l~~~~~ 231 (626)
.+.... ......++..++..+.+.-.++.. .+-.++..+... . ++.-...+.+++..+..-+.
T Consensus 1064 ~~~~~l-------~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~ 1136 (3550)
T KOG0889|consen 1064 MPSLWL-------LDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELF 1136 (3550)
T ss_pred chHHHH-------HHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHc
Confidence 884321 123455666666666663222221 222222222211 1 11112234455666666667
Q ss_pred CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHH
Q 006912 232 DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEY 266 (626)
Q Consensus 232 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~ 266 (626)
++++.||+.+..+|..+.+..+......+..+-+.
T Consensus 1137 npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ 1171 (3550)
T KOG0889|consen 1137 NPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDV 1171 (3550)
T ss_pred CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 88999999999999999887754444433333333
No 268
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=89.65 E-value=7.1 Score=31.71 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=56.8
Q ss_pred hhHHHHHHHHhhhcC-CCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 006912 429 PHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (626)
Q Consensus 429 ~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (626)
.++..++|.+...+. ...+..|.++...++.++...+ -..+.+..++..+.+....... ...+..++..++
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~------L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~ 73 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP------LSDEVLNALMESILKNWTQETV--QRQALICLIVLC 73 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHH
Confidence 467789999999999 7889999999999999997654 3466677777777776654433 566888888888
Q ss_pred HHh
Q 006912 508 EEA 510 (626)
Q Consensus 508 ~~~ 510 (626)
..-
T Consensus 74 q~q 76 (121)
T PF12397_consen 74 QSQ 76 (121)
T ss_pred Hcc
Confidence 554
No 269
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=89.54 E-value=23 Score=35.05 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=52.8
Q ss_pred HHHHHHhhhcCCC-chHHHHHHHHHHHHHHHHHhhhcCCCchhhhHH--HHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 006912 433 EIVAFLIPLLDDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE--KVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (626)
Q Consensus 433 ~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~ll~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (626)
+++..++..++.+ +|.+-.-||.=+|.+.++.|.. ...+. ..=..+++.+++++|.||-.|..|+.++.-
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g------k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG------KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH------hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 4777888888754 4888889999999999987642 22222 223456778889999999999999988763
No 270
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=89.46 E-value=25 Score=35.29 Aligned_cols=169 Identities=14% Similarity=0.041 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhh----------cC-CCchh
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD----------IG-HQNGR 474 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----------~~-~~~~~ 474 (626)
-.+-...+.++..+....+..+..+...=+|.++..+-+....+|..|..+...+...++.. .. +-...
T Consensus 148 ~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~ 227 (372)
T PF12231_consen 148 KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG 227 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc
Confidence 45666777888888888777776666666777777777888888888766655555444321 00 00011
Q ss_pred hhHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Q 006912 475 EQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (626)
Q Consensus 475 ~~~~~ll~~l~~~l~d-~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~ 553 (626)
.+.+.+.+.+.+.+.+ .+.......-.++..++..-.-.--+++...+.....+++..+..++..++.|=..++.....
T Consensus 228 ~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~ 307 (372)
T PF12231_consen 228 KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNP 307 (372)
T ss_pred cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445555556666665 333333444444444442211233468888888888888888777777777777777765543
Q ss_pred cc-CChhhhhhhhHHHHHHHhc
Q 006912 554 EL-NQPVYLDILMPPLIAKWQQ 574 (626)
Q Consensus 554 ~~-~~~~~~~~l~~~l~~~~~~ 574 (626)
+. ..+..+.-++.|+...++.
T Consensus 308 ~~~~~~k~l~lL~~Pl~~~l~~ 329 (372)
T PF12231_consen 308 NELTSPKRLKLLCQPLSSQLRR 329 (372)
T ss_pred CccccHHHHHHHHHHHHHHhCc
Confidence 22 2344666666777665553
No 271
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.24 E-value=18 Score=33.44 Aligned_cols=206 Identities=15% Similarity=0.128 Sum_probs=110.8
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHH
Q 006912 229 LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVP 308 (626)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~ 308 (626)
..+..+++.....+++|..++.+.. ...+.++..+.........+.+..++..+..+-+... ..-+++..++.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~---r~f~~L~~~L~ 81 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND---RHFPFLQPLLL 81 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc---hHHHHHHHHHH
Confidence 5556778888888888888887652 2234455555555555555555566666666655421 12244444433
Q ss_pred HHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHH
Q 006912 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP 388 (626)
Q Consensus 309 ~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 388 (626)
.+........ .+ ....|....+.+.++..++...|+ .-.
T Consensus 82 ~~~~r~~~~~-----------------------------------~~-----~~~~~~~~i~~a~s~~~ic~~~p~-~g~ 120 (234)
T PF12530_consen 82 LLILRIPSSF-----------------------------------SS-----KDEFWECLISIAASIRDICCSRPD-HGV 120 (234)
T ss_pred HHHhhccccc-----------------------------------CC-----CcchHHHHHHHHHHHHHHHHhChh-hHH
Confidence 3211111000 00 111244555556778888888876 445
Q ss_pred hHHHHHHHhh-cCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcC-CCchHHHHHHHHHHHHHHHHHhh
Q 006912 389 TLMPVIQAKL-SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQ 466 (626)
Q Consensus 389 ~l~~~l~~~l-~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~ 466 (626)
.+++.+...+ ++.+ ...+..++.++..+.+.-.-++ ......+.+.+. +..|.|-...+..++-+...-
T Consensus 121 ~ll~~ls~~L~~~~~---~~~~alale~l~~Lc~~~vvd~----~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~-- 191 (234)
T PF12530_consen 121 DLLPLLSGCLNQSCD---EVAQALALEALAPLCEAEVVDF----YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGA-- 191 (234)
T ss_pred HHHHHHHHHHhcccc---HHHHHHHHHHHHHHHHHhhccH----HHHHHHHHHhcCCccchHHHHHHHHHHHHhcccc--
Confidence 6777788888 5555 7778888888888875432222 223344444443 445666554433333222111
Q ss_pred hcCCCchhhhHHHHHHHHHHHhccCC
Q 006912 467 DIGHQNGREQFEKVLMGLLKRILDTN 492 (626)
Q Consensus 467 ~~~~~~~~~~~~~ll~~l~~~l~d~~ 492 (626)
+...........++..+.+.....+
T Consensus 192 -~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 192 -VDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred -CChhhhhHHHHHHHHHHHhhccccc
Confidence 0111234455666666666655544
No 272
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.05 E-value=8.9 Score=32.17 Aligned_cols=97 Identities=10% Similarity=-0.041 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~ 485 (626)
|..-...+..+..- ...-.+.+..+...+.+.++.+...|+..+..+.+.++... +..-.-..++..+.
T Consensus 22 w~~ileicD~In~~--------~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~f---h~evas~~fl~~l~ 90 (142)
T cd03569 22 LASILEICDMIRSK--------DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHF---HDEVASREFMDELK 90 (142)
T ss_pred HHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHH---HHHHhhHHHHHHHH
Confidence 76655555554321 11234567888899999999999999999999999876421 11222344555555
Q ss_pred HHhc-cCCHHHHHHHHHHHHHHHHHhccc
Q 006912 486 KRIL-DTNKRVQEAACSAFATLEEEAAEE 513 (626)
Q Consensus 486 ~~l~-d~~~~v~~~a~~al~~l~~~~~~~ 513 (626)
+.+. ..++.|+..++..+......++..
T Consensus 91 ~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 91 DLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 5554 457899999999999999888643
No 273
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=89.02 E-value=36 Score=36.59 Aligned_cols=376 Identities=14% Similarity=0.079 Sum_probs=187.5
Q ss_pred HhhhhhCCcHHHHHHHHHHHHHHHhhcCc--CchHHH--HHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCC
Q 006912 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGI--AGWLEL--LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (626)
Q Consensus 98 L~~~l~~~~~~vr~~~~~~l~~i~~~~~~--~~~~~l--l~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~ 173 (626)
.+..|.+.++.+...++.-+..++..+.. .....+ ++.++..+.+.+..++..++-+|..++-.-...- +.. .
T Consensus 238 ~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~-NKl-a- 314 (717)
T KOG1048|consen 238 VISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS-NKL-A- 314 (717)
T ss_pred HHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc-cch-h-
Confidence 34455677788888888888888765421 122222 7889999999999999999999998876543310 000 0
Q ss_pred ccchhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHhccchHHHH-hHHHHHHHHHHh-------cCCC-------CHHH
Q 006912 174 AECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFV-SMDQYLQGLFLL-------SNDP-------SAEV 237 (626)
Q Consensus 174 ~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~-~~~~~l~~l~~~-------~~~~-------~~~~ 237 (626)
-...+ -++.+++.+.. .|.++|+.+...|.++-+. +.+.. .+..-+..|... ..++ +..+
T Consensus 315 -i~~~~-Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~--D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 315 -IKELN-GVPTLVRLLRHTQDDEVRELITGILWNLSSN--DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred -hhhcC-ChHHHHHHHHhhcchHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccee
Confidence 01123 35667777775 6888999888888777665 11211 111222233221 1111 1345
Q ss_pred HHHHHHHHHHHHhhCcc------chhhhHHHHHHHHHhhc--cCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHH
Q 006912 238 RKLVCAAFNLLIEVRPS------FLEPHLRNLFEYMLQVN--KDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPV 309 (626)
Q Consensus 238 ~~~~~~~l~~l~~~~~~------~~~~~l~~l~~~~~~~~--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ 309 (626)
...+..||..+.....+ .....++.++-++.... .+.|.....++...+..+.-. ....+.+...+....
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYr--l~~Evp~~~~~~~~~ 468 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYR--LEAEVPPKYRQVLAN 468 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCch--hhhhcCHhhhhHhhc
Confidence 56666777655543221 12233444444443332 234455566676666666432 111111111111111
Q ss_pred Hhh------------hcccCchhhhhh-hhhcc--C-CCCCCCC------CCCcccccccCCCCCCCCCCCccccccccH
Q 006912 310 LLS------------NMIYADDDESLV-EAEED--E-SLPDRDQ------DLKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (626)
Q Consensus 310 l~~------------~l~~~~~d~~~~-~~~~~--e-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (626)
.-. +..........| ++.+. . ..+.+.+ -+++++.....+ .....
T Consensus 469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s-------------~n~~T 535 (717)
T KOG1048|consen 469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALS-------------KNDNT 535 (717)
T ss_pred ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHh-------------cchHH
Confidence 000 000000000111 11000 0 0011111 122222211100 00123
Q ss_pred HHHHHHHHHHHHhhcCc---chH------HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH-HHHHHH
Q 006912 368 RKCSAAALDVLSNVFGD---EIL------PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAF 437 (626)
Q Consensus 368 r~~a~~~l~~l~~~~~~---~~~------~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~ 437 (626)
-++++.+|..++...+. .+. ...+|.+.+++..++ ..+..++..+|+.++-.... .+.+ ...++.
T Consensus 536 lEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~---~~vv~s~a~~LrNls~d~rn--k~ligk~a~~~ 610 (717)
T KOG1048|consen 536 LEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDD---SDVVRSAAGALRNLSRDIRN--KELIGKYAIPD 610 (717)
T ss_pred HHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCC---chHHHHHHHHHhhhccCchh--hhhhhcchHHH
Confidence 45566777776665432 221 235678888998888 89999999999999887631 1111 235777
Q ss_pred HhhhcCCCc------hHHHHHHHHHHHHHH-HHHhhhcCCCchhhh-HHHHHHHHHHHhcc-CCHHHHHHHHHHHHHH
Q 006912 438 LIPLLDDKF------PLIRSISCWTLSRFS-KFIVQDIGHQNGREQ-FEKVLMGLLKRILD-TNKRVQEAACSAFATL 506 (626)
Q Consensus 438 l~~~l~d~~------~~vr~~a~~~l~~l~-~~~~~~~~~~~~~~~-~~~ll~~l~~~l~d-~~~~v~~~a~~al~~l 506 (626)
++..|.+.. ..+..++|.++..+. +..... .+. -..-++.++..... .++.+..+|+..+..+
T Consensus 611 lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nA------kdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 611 LVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNA------KDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVL 682 (717)
T ss_pred HHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHH------HHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 777776533 466677777777776 332221 111 11223344333332 3566666666655554
No 274
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=88.99 E-value=16 Score=33.26 Aligned_cols=158 Identities=11% Similarity=0.046 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhh-CCcHHHH
Q 006912 32 DKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-AADRHIR 110 (626)
Q Consensus 32 ~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~-~~~~~vr 110 (626)
.|+-|.+.........+....+..++. +..-+.|..|+.++.... ...++.... .+-..+. -.+..+.
T Consensus 35 lr~lak~~~~~~~~~~~~~~l~~~L~~---~~~~E~~~la~~il~~~~----~~~~~~~~~----~~~~~~~~~~~W~~~ 103 (213)
T PF08713_consen 35 LRKLAKDIYKELKLSEELYELADELWE---SGYREERYLALLILDKRR----KKLTEEDLE----LLEKWLPDIDNWATC 103 (213)
T ss_dssp HHHHHHHHHHHHCTSHHHHHHHHHHHC---SSCHHHHHHHHHHHHHCG----GG--HHHHH----HHHHCCCCCCCHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHcC---CchHHHHHHHHHHhHHHh----hhhhHHHHH----HHHHHhccCCcchhh
Confidence 455555545554444222333333443 556888988888885432 223332222 2222332 2455555
Q ss_pred HHH-HHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhc
Q 006912 111 STV-GTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (626)
Q Consensus 111 ~~~-~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 189 (626)
..+ ..+++.+.... +.+.+.+.+.+.|+++-+|..|+.++...... .....++..+...+
T Consensus 104 D~~~~~~~~~~~~~~-----~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--------------~~~~~~l~~~~~~~ 164 (213)
T PF08713_consen 104 DSLCSKLLGPLLKKH-----PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--------------EDFDELLEIIEALL 164 (213)
T ss_dssp HHHTHHHHHHHHHHH-----GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--------------CHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhh-----HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHc
Confidence 554 55666665432 67788999999999999999888776544443 12467777777888
Q ss_pred CCCChHHHHHHHHHHHHHHhccchHHHHhH
Q 006912 190 QSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (626)
Q Consensus 190 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 219 (626)
.+++..||.+.-.+|..+....|+...+.+
T Consensus 165 ~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l 194 (213)
T PF08713_consen 165 KDEEYYVQKAIGWALREIGKKDPDEVLEFL 194 (213)
T ss_dssp TGS-HHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 899999999999999999877666554443
No 275
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=88.89 E-value=2.6 Score=31.76 Aligned_cols=67 Identities=19% Similarity=0.368 Sum_probs=54.5
Q ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHH
Q 006912 221 QYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (626)
Q Consensus 221 ~~l~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~ 287 (626)
.++..+...+ ..++.++|...++|+..++...++.++.-.+.++..+-....+.++++...|++++.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4455555553 456889999999999999999999999889999999888888888888888877653
No 276
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=88.82 E-value=7.3 Score=33.90 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=75.7
Q ss_pred ChhHHhHHHHHHHHHhhhchhccccC--CCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHH
Q 006912 144 DINHMEGAMDALSKICEDIPQVLDSD--VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQ 221 (626)
Q Consensus 144 ~~~~r~~~l~~l~~l~~~~~~~~~~~--~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ 221 (626)
+...|..++..+..+.+..+..+... .+.+....-..+.+.+.+.+.+++..+-..+++.+..+.......+...++.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999888766521 0111122336677778887777778888899999998887766677766777
Q ss_pred HHHHHHH-hcCCC--CHHHHHHHHHHHHHHHhh
Q 006912 222 YLQGLFL-LSNDP--SAEVRKLVCAAFNLLIEV 251 (626)
Q Consensus 222 ~l~~l~~-~~~~~--~~~~~~~~~~~l~~l~~~ 251 (626)
+++.++. .+..+ ....|..+++++..++..
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 7777766 44422 245778889999988864
No 277
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=88.81 E-value=12 Score=31.16 Aligned_cols=99 Identities=13% Similarity=0.025 Sum_probs=70.4
Q ss_pred cCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhh-H
Q 006912 399 SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-F 477 (626)
Q Consensus 399 ~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~ 477 (626)
.++| |..-...+..+..=. ..-...+..+...+++.++.|...|+..+..+.+.++.. .+... -
T Consensus 15 ~~~d---w~~ileicD~In~~~--------~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~----fh~evas 79 (139)
T cd03567 15 REED---WEAIQAFCEQINKEP--------EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGER----FHSEVGK 79 (139)
T ss_pred CCCC---HHHHHHHHHHHHcCC--------ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH----HHHHHHh
Confidence 3455 887777666664311 112346778889999999999999999999999988653 22222 2
Q ss_pred HHHHHHHHHHhcc------CCHHHHHHHHHHHHHHHHHhcc
Q 006912 478 EKVLMGLLKRILD------TNKRVQEAACSAFATLEEEAAE 512 (626)
Q Consensus 478 ~~ll~~l~~~l~d------~~~~v~~~a~~al~~l~~~~~~ 512 (626)
..++..+++.+.. .++.|+..++..+......++.
T Consensus 80 ~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 80 FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 5556667776642 4689999999999999988763
No 278
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.70 E-value=11 Score=35.59 Aligned_cols=105 Identities=18% Similarity=0.170 Sum_probs=69.7
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCc
Q 006912 393 VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN 472 (626)
Q Consensus 393 ~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 472 (626)
-+.+++.+++ +.+|.+|+..+..+.......+..+-...++.+.+.+.+..+ ..-|+.++.+++.... -
T Consensus 7 elv~ll~~~s---P~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~------l 75 (353)
T KOG2973|consen 7 ELVELLHSLS---PPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE------L 75 (353)
T ss_pred HHHHHhccCC---hHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH------H
Confidence 3556777887 999999998777666553333445555678888888888777 4456677777776442 1
Q ss_pred hhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 006912 473 GREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (626)
Q Consensus 473 ~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (626)
.+..+..++..++..+-|+........|..+.++.+
T Consensus 76 ~~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 76 RKKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 344455555566666667655566667777777754
No 279
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=88.33 E-value=7.1 Score=32.72 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=56.0
Q ss_pred hHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH--HHHHHHHhhhcCC--CchH--HHHHHHHHHHH
Q 006912 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDD--KFPL--IRSISCWTLSR 459 (626)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~l~~~l~~~l~d--~~~~--vr~~a~~~l~~ 459 (626)
.-...+..+.+.+.+++ +.+..-|+..+..+..+|+..+...+ ...+..+...+.+ ..+. ||..++..+..
T Consensus 39 ~~kea~~~l~krl~~~~---~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGN---PNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQE 115 (140)
T ss_dssp HHHHHHHHHHHHHTTSS---HHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHH
Confidence 34567788999999988 99999999999999999976553222 1233444443332 2233 99999999999
Q ss_pred HHHHHhh
Q 006912 460 FSKFIVQ 466 (626)
Q Consensus 460 l~~~~~~ 466 (626)
+...+..
T Consensus 116 W~~~f~~ 122 (140)
T PF00790_consen 116 WAEAFKS 122 (140)
T ss_dssp HHHHTTT
T ss_pred HHHHHCC
Confidence 9998853
No 280
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=88.11 E-value=20 Score=37.10 Aligned_cols=100 Identities=12% Similarity=0.011 Sum_probs=71.1
Q ss_pred ccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchH--HHHh
Q 006912 141 DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA--LFVS 218 (626)
Q Consensus 141 ~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~--~~~~ 218 (626)
.+-++.+|..++..|+..+...|+.+.. ...+....-.|.|.+..||....+.+..++...|.. +...
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~lvP~yf~k----------~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f 354 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGLVPDYFRK----------ILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRF 354 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhcchHHHHh----------hhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 3556778888999999999888876542 124455666788999999999999999999887742 3344
Q ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhh
Q 006912 219 MDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEV 251 (626)
Q Consensus 219 ~~~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~ 251 (626)
+.-+...++.... |.+- ||..+++.++.+-..
T Consensus 355 ~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 355 VERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Confidence 4445555555443 4344 888888888777654
No 281
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=88.06 E-value=15 Score=33.44 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=49.6
Q ss_pred HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHh
Q 006912 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (626)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (626)
+...+.+.+...+++ .-.|.+++.++...... ...+.++..+...+.|++..||.+..|+|..++...+
T Consensus 119 ~~~~~~~~~W~~s~~---~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 119 PEALELLEKWAKSDN---EWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp GGHHHHHHHHHHCSS---HHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred HHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 467788888998987 55555555443233222 5667788888888899999999999999999887544
No 282
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=87.63 E-value=71 Score=38.28 Aligned_cols=133 Identities=19% Similarity=0.277 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHHHHHHhhccCChhHH---------------HHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCc
Q 006912 64 SVEIRQAAGLLLKNNLRTAYKSMSPSNQ---------------QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG 128 (626)
Q Consensus 64 ~~~~r~~a~~~l~~~i~~~~~~l~~~~~---------------~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~ 128 (626)
+..-|..+-.++|+.|+.. .+..+.. ..+....-.++.+.++.++..++.+...++.......
T Consensus 393 ~~~~~k~ie~ilkkKI~~g--~it~~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~ 470 (1426)
T PF14631_consen 393 NEDNRKSIEKILKKKIKSG--HITEQLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC 470 (1426)
T ss_dssp -HHHHHHHHHHHHHHHTTT---S-HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH
T ss_pred CccchHHHHHHHHHHHHhC--cccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh
Confidence 4455777778888887532 2222211 1112112223457889999999999888887753334
Q ss_pred hHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCC-hHHHHHHHHHHHHH
Q 006912 129 WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGSVNQF 207 (626)
Q Consensus 129 ~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vr~~al~~l~~~ 207 (626)
-++++..|...+.+++......|+.+|..+++..+..+.+ ...++..++..+.+=+ ..+|.. +..+..+
T Consensus 471 qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~---------fa~~l~giLD~l~~Ls~~qiR~l-f~il~~L 540 (1426)
T PF14631_consen 471 QQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQP---------FATFLKGILDYLDNLSLQQIRKL-FDILCTL 540 (1426)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHH---------THHHHHGGGGGGGG--HHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHH---------HHHHHHHHHHHHhcCCHHHHHHH-HHHHHHH
Confidence 5889999999998877777789999999999887766532 2344444555555533 345543 5555544
Q ss_pred H
Q 006912 208 I 208 (626)
Q Consensus 208 ~ 208 (626)
+
T Consensus 541 a 541 (1426)
T PF14631_consen 541 A 541 (1426)
T ss_dssp H
T ss_pred h
Confidence 4
No 283
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=87.41 E-value=24 Score=32.72 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=78.8
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhc-C---CCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc--c---
Q 006912 442 LDDKFPLIRSISCWTLSRFSKFIVQDI-G---HQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA--E--- 512 (626)
Q Consensus 442 l~d~~~~vr~~a~~~l~~l~~~~~~~~-~---~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~--~--- 512 (626)
++|+++.|...++.+.+.+-...-..+ . .......+..+=..++..+.+.++.||..|.+.+..++-... .
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 678899999988888877664422111 0 011234455666677778888899999999999999985431 0
Q ss_pred --------c-----------------ccchHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHhccccCChhhhhhhh
Q 006912 513 --------E-----------------LAPRLEIILQHLMMAFGKYQ--RRNLRIVYDAIGTLADAVGFELNQPVYLDILM 565 (626)
Q Consensus 513 --------~-----------------~~~~l~~i~~~l~~~l~~~~--~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~ 565 (626)
+ +..-...++..|+..+.... ......++.+++.++.. +|.|++.++
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~------RP~~~~~Il 155 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ------RPQFMSRIL 155 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH------SGGGHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH------hhHHHHHHH
Confidence 0 11113456667777776655 23345677777777755 356888888
Q ss_pred HHHHHH
Q 006912 566 PPLIAK 571 (626)
Q Consensus 566 ~~l~~~ 571 (626)
+.+.+.
T Consensus 156 ~~ll~~ 161 (239)
T PF11935_consen 156 PALLSF 161 (239)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 877644
No 284
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=87.28 E-value=4.7 Score=34.59 Aligned_cols=141 Identities=19% Similarity=0.200 Sum_probs=80.6
Q ss_pred Hhhhhh--CCcHHHHHHHHHHHHHHHhhcCcCchHHHH-HHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCc
Q 006912 98 LLPCLG--AADRHIRSTVGTIVSVVVQLGGIAGWLELL-QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (626)
Q Consensus 98 L~~~l~--~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll-~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~ 174 (626)
++..|. ...+.+|..+.-++..+.... +..+.+.+ .++...+..++.+-...++.++..++...++.-..-+
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~~-~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~---- 82 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDAA-REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF---- 82 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC----
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH----
Confidence 344443 356788999888888886332 33344443 3344444443344555677777777776665322111
Q ss_pred cchhhhhHHHHHHhcC--CCChHHHHHHHHHHHHHHhccchHHHHh-HHHHHHHHHHhcC-CCCHH-HHHHHHHHHHH
Q 006912 175 ECPINIFLPRLLQFFQ--SPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSN-DPSAE-VRKLVCAAFNL 247 (626)
Q Consensus 175 ~~~~~~il~~l~~~l~--~~~~~vr~~al~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~-~~~~~-~~~~~~~~l~~ 247 (626)
..+++++.+..... ..+..+...+++++..-+.. +..... ..+.++.|-...+ .++.. +|..|.-.|++
T Consensus 83 --~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 83 --LSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp --CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred --hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 12567777777777 67788999999999876643 222222 2234555555553 33444 67777666654
No 285
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=86.71 E-value=1.3 Score=27.93 Aligned_cols=41 Identities=29% Similarity=0.274 Sum_probs=28.1
Q ss_pred HHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHH
Q 006912 415 ALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (626)
Q Consensus 415 ~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l 457 (626)
+++.+.+..+.-+ ..+.+...+...+.|+++.||.+|+.++
T Consensus 2 ~l~~iv~~dp~ll--~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLL--DSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCcccc--chHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4555555443222 1235788889999999999999998653
No 286
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.71 E-value=31 Score=33.15 Aligned_cols=87 Identities=14% Similarity=0.076 Sum_probs=58.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHH-HHHHHHHhc-cC-CHHHHHHHHHHHHHHHHHhcccccchHHH
Q 006912 444 DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKV-LMGLLKRIL-DT-NKRVQEAACSAFATLEEEAAEELAPRLEI 520 (626)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l-l~~l~~~l~-d~-~~~v~~~a~~al~~l~~~~~~~~~~~l~~ 520 (626)
.++|.|...++-+++.++-..++. ....++.- -...++.|+ .+ ...||..||+.+.+++....+.-.+.+..
T Consensus 341 ~~~p~Vi~~~~a~i~~l~LR~pdh-----sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~ 415 (461)
T KOG4199|consen 341 SDDPLVIQEVMAIISILCLRSPDH-----SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN 415 (461)
T ss_pred CCChHHHHHHHHHHHHHHhcCcch-----HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc
Confidence 357999999999999998765532 22222221 223344554 23 35799999999999998877777788887
Q ss_pred HHHHHHHHHhhhhHH
Q 006912 521 ILQHLMMAFGKYQRR 535 (626)
Q Consensus 521 i~~~l~~~l~~~~~~ 535 (626)
=++.|+..-...+..
T Consensus 416 GiE~Li~~A~~~h~t 430 (461)
T KOG4199|consen 416 GIEKLIRTAKANHET 430 (461)
T ss_pred cHHHHHHHHHhcCcc
Confidence 777777666554433
No 287
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=86.45 E-value=82 Score=37.79 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=78.7
Q ss_pred hhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 006912 427 LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (626)
Q Consensus 427 ~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l 506 (626)
+..|++.++...-..+..+++.|+..+......+-..+.. -+-+.++..|+..+.+.+..-..+|...|..+
T Consensus 429 L~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds--------~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L 500 (1426)
T PF14631_consen 429 LKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS--------YCQQEVVGALVTHIGSGNSQEVDAALDVLCEL 500 (1426)
T ss_dssp HTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H--------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc--------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4567788888777788889999999988777666654421 12356777777766555554457889999999
Q ss_pred HHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 006912 507 EEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (626)
Q Consensus 507 ~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~ 551 (626)
+...++.+.||.. ++..++..++..+....+.++..+..++-.-
T Consensus 501 ~~~~~~~l~~fa~-~l~giLD~l~~Ls~~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 501 AEKNPSELQPFAT-FLKGILDYLDNLSLQQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp HHH-HHHHHHTHH-HHHGGGGGGGG--HHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 9887777777743 4455566666666677777888888876543
No 288
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.25 E-value=73 Score=37.00 Aligned_cols=166 Identities=13% Similarity=0.153 Sum_probs=88.0
Q ss_pred CCcHHHHHHHHHHHHHHHhhcCc---CchHHHHHHHHHHhccC---ChhHHhHHHHHHHHHhhhchhccccCCCCCccch
Q 006912 104 AADRHIRSTVGTIVSVVVQLGGI---AGWLELLQALVTCLDSN---DINHMEGAMDALSKICEDIPQVLDSDVPGLAECP 177 (626)
Q Consensus 104 ~~~~~vr~~~~~~l~~i~~~~~~---~~~~~ll~~l~~~l~~~---~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~ 177 (626)
.+...+|...-.++-.|....+. ..|+.++..+....... +.++.+.|..+|.-++..+=..+. +..
T Consensus 853 ~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp-------~sc 925 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLP-------TSC 925 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCC-------hHH
Confidence 34455666556778788776532 34999988888666554 456667778888777665433322 234
Q ss_pred hhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccch
Q 006912 178 INIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (626)
Q Consensus 178 ~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 256 (626)
+..++..+..+-.+ .|..+-..|+..|-.+.+++.. +....++..-.....+.+.. +...+..
T Consensus 926 i~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~--------------km~S~sed~~~~~~~e~~~s--s~~~~~~ 989 (1610)
T KOG1848|consen 926 ILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKN--------------KMFSTSEDSCAYNSVEDLYS--SMKSKEI 989 (1610)
T ss_pred HHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHh--------------hhhccchhhhhhcchhhhcc--cccchhh
Confidence 56666666665443 4556666666666555443211 01111111111111111111 0000111
Q ss_pred --hhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 257 --EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 257 --~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
...+--++..+..+..|...+||..|++.+..+...
T Consensus 990 l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~S 1027 (1610)
T KOG1848|consen 990 LPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNS 1027 (1610)
T ss_pred hhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhh
Confidence 011112333445567788889999999988876554
No 289
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=86.16 E-value=37 Score=33.57 Aligned_cols=193 Identities=14% Similarity=0.054 Sum_probs=106.6
Q ss_pred HHHHHHHhHhhhhh-CCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhcccc
Q 006912 90 NQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (626)
Q Consensus 90 ~~~~i~~~L~~~l~-~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~ 168 (626)
.-..+.+.+...+. |.++.....+..+++.=........-+.++..+.+.+++..+.+|+.-+.+++..+...+..
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~--- 95 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS--- 95 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc---
Confidence 33456667777774 66777776666666555544334445788999999999998889999999999988711110
Q ss_pred CCCCCccchhhhhHHHHHHhc----CCCChHHH----HHHHHHHHHHHhccchHHHH-h-H---------HHH--HHHHH
Q 006912 169 DVPGLAECPINIFLPRLLQFF----QSPHTSLR----KLSLGSVNQFIMLMPSALFV-S-M---------DQY--LQGLF 227 (626)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l----~~~~~~vr----~~al~~l~~~~~~~~~~~~~-~-~---------~~~--l~~l~ 227 (626)
.. ......++|.+.+.+ .++.+... ..+.-.+. ......+.... . . +.+ -+.++
T Consensus 96 ~~----~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvy 170 (339)
T PF12074_consen 96 DS----LKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVY 170 (339)
T ss_pred hH----HHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHH
Confidence 00 133466666666665 34332222 11111111 11100000000 0 0 000 12233
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHHHhhccCC--ChHHHHHHHhHHHHhhcc
Q 006912 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDT--DDDVALEACEFWHSYFEA 292 (626)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~--~~~v~~~a~~~l~~l~~~ 292 (626)
+-+ .+++.....++++..+............ ..+-..++..+-+. ...+|..|++.+..+...
T Consensus 171 skl--~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 171 SKL--ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYAS 236 (339)
T ss_pred hcc--CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 322 2344556777788777766555443322 33444455555444 788999999999887654
No 290
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=86.11 E-value=11 Score=30.49 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=51.5
Q ss_pred hhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh---h--------hHHHHHHHHH
Q 006912 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK---Y--------QRRNLRIVYD 542 (626)
Q Consensus 474 ~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~---~--------~~~~~~~~~~ 542 (626)
...+..++..|.+.|++.++.|+..++..|..+|....+.+...+..-...+..+.+- . ...++..|-+
T Consensus 33 ~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 33 VGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 3457789999999999999999999999999999987766655544433333332221 1 1234556777
Q ss_pred HHHHHH
Q 006912 543 AIGTLA 548 (626)
Q Consensus 543 ~l~~i~ 548 (626)
++..+.
T Consensus 113 l~~~if 118 (122)
T cd03572 113 LIKAIF 118 (122)
T ss_pred HHHHHh
Confidence 766654
No 291
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.01 E-value=81 Score=37.31 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=90.2
Q ss_pred CCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHH
Q 006912 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (626)
Q Consensus 104 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~ 183 (626)
+.+..||..+.+|+..-. ...|..++..+-....+.+..+.+.+...+..+.........+.. ...+.+.++
T Consensus 1048 s~s~~Irelv~rC~~~ni----kSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~----~~sf~d~v~ 1119 (1514)
T KOG0929|consen 1048 SSSAEIRELVVRCISSNI----KSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQE----MDSFKDCVK 1119 (1514)
T ss_pred cCcchhHHHHHhhhhhhh----hhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhh----hHHHHHHHH
Confidence 456778888888888333 457999999988888888888888888888766665544322110 012334444
Q ss_pred HHHHhcCC-CChHHHHHHHHHHH----HHHhccc-hHHH--------HhHHHHHHHHHH---hcCCCCHHHHHHHHHHHH
Q 006912 184 RLLQFFQS-PHTSLRKLSLGSVN----QFIMLMP-SALF--------VSMDQYLQGLFL---LSNDPSAEVRKLVCAAFN 246 (626)
Q Consensus 184 ~l~~~l~~-~~~~vr~~al~~l~----~~~~~~~-~~~~--------~~~~~~l~~l~~---~~~~~~~~~~~~~~~~l~ 246 (626)
.+..+..+ ..+.....+++-+. .+.+... +.+. .....|+|.++. ...+...++|+.+++.+-
T Consensus 1120 cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF 1199 (1514)
T KOG0929|consen 1120 CLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLF 1199 (1514)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHH
Confidence 44444332 11222222222222 2222100 0111 111123444443 344677899999999999
Q ss_pred HHHhhCccchhh-hHHHHHHHHHhh
Q 006912 247 LLIEVRPSFLEP-HLRNLFEYMLQV 270 (626)
Q Consensus 247 ~l~~~~~~~~~~-~l~~l~~~~~~~ 270 (626)
.+...+++.|.+ +.+.++..++..
T Consensus 1200 ~il~~~g~~F~~~~We~v~~~~fpI 1224 (1514)
T KOG0929|consen 1200 DILKEHGDDFSKEFWEDVFRILFPI 1224 (1514)
T ss_pred HHHHhhhhhccHHHHHHHHHheeec
Confidence 999888876654 556677644433
No 292
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=85.99 E-value=5.7 Score=33.84 Aligned_cols=106 Identities=10% Similarity=0.148 Sum_probs=66.5
Q ss_pred ccchHHHHHHHHHHHHhhhhH-----------HHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCC-CCCc
Q 006912 514 LAPRLEIILQHLMMAFGKYQR-----------RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPN-SDKD 581 (626)
Q Consensus 514 ~~~~l~~i~~~l~~~l~~~~~-----------~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~ 581 (626)
+..+.+.+...++..++-... .+-..+++++-.++-.+....++| ++-+++..-...+..... ....
T Consensus 4 i~~~~~~l~~~~l~ald~R~~~~~~~~~~~v~~vE~~v~~~~~~lV~KLnE~~FRP-lF~~l~dWA~~~l~~~~~~~~~~ 82 (153)
T PF08146_consen 4 ISKNSPQLFDFFLQALDFRRQQRSKFDLEDVDEVESSVISAFVSLVLKLNEATFRP-LFLKLVDWATSGLPKSDSSGSRA 82 (153)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHcccchhHh-HHHHHHHHHcccCCcccCcCchh
Confidence 334555666666666653211 122267888888888887665554 666555443322221110 1111
Q ss_pred -cchHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Q 006912 582 -LFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQL 620 (626)
Q Consensus 582 -~~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~~l~~~~~ 620 (626)
.......+..++..++.-|+||...+++...++|++...
T Consensus 83 R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~~~~ 122 (153)
T PF08146_consen 83 RLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQFNS 122 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 235667788889999999999999999999999987753
No 293
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=85.98 E-value=36 Score=37.09 Aligned_cols=153 Identities=22% Similarity=0.294 Sum_probs=96.3
Q ss_pred HhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCcc
Q 006912 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (626)
Q Consensus 96 ~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~ 175 (626)
..|+..|.+.+-.+...+-..+......+ .=+.+++.++.+.-+.+. ..++.+|..+ . +
T Consensus 7 ~~l~~~l~s~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~y~~~t~s---~~~~~il~~~----~-----------~ 65 (668)
T PF04388_consen 7 TELLSLLESNDLSVLEEIKALLQELLNSD---REPWLVNGLVDYYLSTNS---QRALEILVGV----Q-----------E 65 (668)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHhhcc---chHHHHHHHHHHHhhcCc---HHHHHHHHhc----C-----------C
Confidence 34555565555555444444444444332 223456666665443321 1133333221 1 1
Q ss_pred chhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHH-HHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhCc
Q 006912 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRP 253 (626)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~ 253 (626)
..-..++..+-..+..+ .-|..++..|+.++..-|..+..... .+++.|+..+ .|.+.-+...|+-+|..++-..+
T Consensus 66 P~~K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 66 PHDKHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred ccHHHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 22356666777777754 56889999999999887766544333 4566666654 46777888899999999999999
Q ss_pred cchhhhHHHHHHHHHhhc
Q 006912 254 SFLEPHLRNLFEYMLQVN 271 (626)
Q Consensus 254 ~~~~~~l~~l~~~~~~~~ 271 (626)
..+.+|+++++.....++
T Consensus 144 ~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 144 SSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 999999999999876653
No 294
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=85.90 E-value=24 Score=31.50 Aligned_cols=133 Identities=20% Similarity=0.177 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHHHHccCccc--hhhhHHHHHHHHhhhcCCCch--HHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKG--LYPHLSEIVAFLIPLLDDKFP--LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~--~~~~l~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll 481 (626)
-++|..|..++..+....... ..|+.+. +...+..++. ..-..+.++..++...+ ....|...++
T Consensus 21 DrvR~~A~~~l~~ll~~~~~~~~~ip~~~~----L~~i~~~~~~~~~~w~~~~~~F~~l~~LL-------~~~~y~~~ll 89 (193)
T PF12612_consen 21 DRVREVAGKCLQRLLHSQDPTIPHIPHREE----LQDIFPSESEASLNWSSSSEYFPRLVKLL-------DLPEYRYSLL 89 (193)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCCcHHH----HHHHcccccccccccCCHHHHHHHHHHHh-------ccHHHHHHHH
Confidence 589999999999988433111 1233322 2222222111 11112333444445443 2568889999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHH
Q 006912 482 MGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR--RNLRIVYDAIGTLADA 550 (626)
Q Consensus 482 ~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~--~~~~~~~~~l~~i~~~ 550 (626)
.+++-.....+..+...+..||..++... +.-...+..++..++..+.+... .+..-+++++..+...
T Consensus 90 ~Glv~S~G~~tesl~~~s~~AL~~~~~~~-~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 90 SGLVVSAGGLTESLVRASSAALLSYLREL-SDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred hHHHhcCCCCchhHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC
Confidence 99999998888888888999999998754 22233456666666766665432 3333566666666654
No 295
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=85.78 E-value=19 Score=29.83 Aligned_cols=91 Identities=12% Similarity=0.168 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH--HHHHHHHhhhcCC--Cc
Q 006912 371 SAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDD--KF 446 (626)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~l~~~l~~~l~d--~~ 446 (626)
.....+.+... ...-...+..+.+.+++++ +.+..-|+..+..+..+|+..+...+ ...+..+...+.+ .+
T Consensus 21 ~l~icD~i~~~--~~~~k~a~r~l~krl~~~n---~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~ 95 (133)
T smart00288 21 ILEICDLINST--PDGPKDAVRLLKKRLNNKN---PHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPL 95 (133)
T ss_pred HHHHHHHHhCC--CccHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCc
Confidence 34444544333 2223467778889999988 99999999999999999976553322 1244455555543 33
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 006912 447 PLIRSISCWTLSRFSKFIVQ 466 (626)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~ 466 (626)
+.|+..++..+..++..+..
T Consensus 96 ~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 96 PLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 45999999999999988853
No 296
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=85.73 E-value=48 Score=34.47 Aligned_cols=327 Identities=18% Similarity=0.121 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccC
Q 006912 195 SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP-SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD 273 (626)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~ 273 (626)
..|..|++-+...+...+- +.++.+....-.++... ..+.|..+++.+..+++.........=..++..+...-.+
T Consensus 5 ~~R~~a~~~l~~~i~~~~~---~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPL---SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND 81 (464)
T ss_pred HHHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence 4577788877777765543 33334444444444433 4579999999999999876653322112333333222222
Q ss_pred CChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCC
Q 006912 274 TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSEN 353 (626)
Q Consensus 274 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 353 (626)
++-..+. +.+..+.++. +.+..+-..+.|.+..|+...-+....- |....+.+.....+
T Consensus 82 ~d~~~~l---~aL~~LT~~G---rdi~~~~~~i~~~L~~wl~~~~~~~~~~---------------r~~~~~~~~~~~~~ 140 (464)
T PF11864_consen 82 DDFDLRL---EALIALTDNG---RDIDFFEYEIGPFLLSWLEPSYQAARSA---------------RRKAKKSSSSKSKG 140 (464)
T ss_pred hhHHHHH---HHHHHHHcCC---cCchhcccchHHHHHHHHHHHHHHHHHH---------------HHHhhccccccccc
Confidence 2323344 4455665542 2223344455555555543211000000 00000000000000
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHhhc-------CcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccc
Q 006912 354 PEDDDDDIVNVWNLRKCSAAALDVLSNVF-------GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG 426 (626)
Q Consensus 354 ~~~~~~~~~~~~~~r~~a~~~l~~l~~~~-------~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~ 426 (626)
....+.+ -......+..+...+ .++.+..++..+......... ...-++++..+..+..+.. -
T Consensus 141 ~~~~~~~-------~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~--~~di~~~L~vldaii~y~~-i 210 (464)
T PF11864_consen 141 LSNLDNE-------ESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSS--EDDIEACLSVLDAIITYGD-I 210 (464)
T ss_pred cccccch-------hhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHHHcCc-C
Confidence 0000000 011223333333322 234455666666555444321 5556788888888766431 0
Q ss_pred hhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhc--c----CCHHHHHHHH
Q 006912 427 LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL--D----TNKRVQEAAC 500 (626)
Q Consensus 427 ~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~--d----~~~~v~~~a~ 500 (626)
-...+..++..+.....- ......+..++..+++. ..-...+..+...|. + .+..+-.-|.
T Consensus 211 P~~sl~~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S-----------~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv 277 (464)
T PF11864_consen 211 PSESLSPCIEVLCSIVNS--VSLCKPSWRTMRNLLKS-----------HLGHSAIRTLCDILRSPDPQNKRDINVLRGAV 277 (464)
T ss_pred ChHHHHHHHHHHhhHhcc--cccchhHHHHHHHHHcC-----------ccHHHHHHHHHHHHcccCccccccHHHHhhHH
Confidence 023444445444444222 25555666677666641 112333444445552 2 2455666788
Q ss_pred HHHHHHHHHhcccccch----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHhccccCChhhhhhhhHHHH
Q 006912 501 SAFATLEEEAAEELAPR----LEIILQHLMMAFGKYQRRNLRIVYDAIGTLA-DAVGFELNQPVYLDILMPPLI 569 (626)
Q Consensus 501 ~al~~l~~~~~~~~~~~----l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~-~~~~~~~~~~~~~~~l~~~l~ 569 (626)
..+..++-..++.-.|- ...+++.+...++..+..+-..++.++..++ ...+..+.. ..++.++..+.
T Consensus 278 ~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~-~~W~~~~~i~~ 350 (464)
T PF11864_consen 278 FFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSE-EDWDIILDIIE 350 (464)
T ss_pred HHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcc-cCchHHHHHHH
Confidence 88888776654332221 2358888888888665544445666666666 555554432 24454544433
No 297
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=84.64 E-value=4.3 Score=31.75 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=52.3
Q ss_pred chhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHhhh
Q 006912 472 NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE-LAPRLEIILQHLMMAFGKY 532 (626)
Q Consensus 472 ~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~-~~~~l~~i~~~l~~~l~~~ 532 (626)
...++++.++..+...|.+-.+.||..+...|.-+++.+++. +..+...+++.+..++...
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 467888889999999999989999999999999999999887 6677778888888777654
No 298
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=84.30 E-value=27 Score=30.33 Aligned_cols=100 Identities=13% Similarity=0.033 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHHHHHhccchHHH---------HhH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHH
Q 006912 193 HTSLRKLSLGSVNQFIMLMPSALF---------VSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (626)
Q Consensus 193 ~~~vr~~al~~l~~~~~~~~~~~~---------~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 262 (626)
+...|..+++.+..+++..+..+. ..+ ..+.+.+.+....++..+-..+++.+..+.......++..++.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888877655444 111 2445666666655668888899999999999888888888888
Q ss_pred HHHHHHh-hccCC--ChHHHHHHHhHHHHhhcc
Q 006912 263 LFEYMLQ-VNKDT--DDDVALEACEFWHSYFEA 292 (626)
Q Consensus 263 l~~~~~~-~~~~~--~~~v~~~a~~~l~~l~~~ 292 (626)
++..++. .+..+ ...-|..+++++..+++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 8877766 34332 234688899999999885
No 299
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=84.22 E-value=21 Score=28.94 Aligned_cols=73 Identities=10% Similarity=0.060 Sum_probs=53.6
Q ss_pred hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHH---HHHHHHHHhcCC--------CCHHHHHHHHHHHH
Q 006912 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD---QYLQGLFLLSND--------PSAEVRKLVCAAFN 246 (626)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~---~~l~~l~~~~~~--------~~~~~~~~~~~~l~ 246 (626)
...++..|..-|++.++.|+..++++|..++...++.+...+. .++..+.+.-.. +...||..|-+++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 5678888999999999999999999999999888776665443 344555544332 23468888888877
Q ss_pred HHHh
Q 006912 247 LLIE 250 (626)
Q Consensus 247 ~l~~ 250 (626)
.+..
T Consensus 116 ~if~ 119 (122)
T cd03572 116 AIFS 119 (122)
T ss_pred HHhc
Confidence 6654
No 300
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=84.01 E-value=2.1 Score=27.01 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=22.7
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHH
Q 006912 179 NIFLPRLLQFFQSPHTSLRKLSLGSV 204 (626)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l 204 (626)
+.+...+...+.|+++.||.+|++.+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 57888899999999999999998753
No 301
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=83.88 E-value=5.3 Score=31.25 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=48.8
Q ss_pred hHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccc-hhhhHHHHHHHHHhhcc
Q 006912 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF-LEPHLRNLFEYMLQVNK 272 (626)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~l~~~~~~~~~ 272 (626)
+.+.++++.++..+...+.+-.+++|..++..|..+++.+|+. +..+...+++.....+.
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 4556777778888888888889999999999999999999988 66677777776665543
No 302
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=83.84 E-value=1.7 Score=26.96 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.8
Q ss_pred HHHHHhhhcCCCchHHHHHHHHHHHHHH
Q 006912 434 IVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (626)
Q Consensus 434 l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (626)
.++.+++.+.++++.++..++++|++++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4677777777889999999999999876
No 303
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=83.61 E-value=3.9 Score=35.04 Aligned_cols=131 Identities=15% Similarity=0.042 Sum_probs=80.2
Q ss_pred cHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH--HHHHHHHhhhcC
Q 006912 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLD 443 (626)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~l~~~l~~~l~ 443 (626)
++|..+.-++..+-...++.....+-.++...+...+ ......++.++..+..+.++.....+ +.+++.+.+...
T Consensus 20 ~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~---~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 20 EVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGE---MDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---CCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccc---chhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 4788898888888666666666677788888887665 44666777777777666543221111 224455555555
Q ss_pred --CCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhc-cCCHH-HHHHHHHHHHH
Q 006912 444 --DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKR-VQEAACSAFAT 505 (626)
Q Consensus 444 --d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~-d~~~~-v~~~a~~al~~ 505 (626)
..+..+..+++.++..-|..-. ...-.....++.+-+..+ +++.. +|..|+-.|.+
T Consensus 97 ~~~~~~~~~~~~lell~aAc~d~~------~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAACIDKS------CRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHTTSHH------HHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHccHH------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 5778888899888876663211 012223444555556664 44455 78877777654
No 304
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.47 E-value=1e+02 Score=36.38 Aligned_cols=99 Identities=10% Similarity=0.022 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhc
Q 006912 410 EAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (626)
Q Consensus 410 ~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~ 489 (626)
...+-++++++...+++ +..+...++....++++.+|..|+..+..+.+.+++. ....+++.+|.+-+.+.
T Consensus 1522 ~~li~~i~~~~~a~~~d----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~-----~~~lL~q~iPfLaEL~E 1592 (1621)
T KOG1837|consen 1522 KLLIAEIASDSVADKDD----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGEN-----VIVLLPQSIPFLAELME 1592 (1621)
T ss_pred HHHHHHHHhhccCChhh----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcch-----hHHhhhhhhHHHHHHHh
Confidence 33344455554444433 3344455556667899999999999999999888764 56788999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccch
Q 006912 490 DTNKRVQEAACSAFATLEEEAAEELAPR 517 (626)
Q Consensus 490 d~~~~v~~~a~~al~~l~~~~~~~~~~~ 517 (626)
|.+..|-..+...+..+=+..|+.+..|
T Consensus 1593 D~~~~Ve~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1593 DEDDEVECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred hhHHHHHHHHHHHHHHHHHHhchhhhhc
Confidence 9889988877776555556668766554
No 305
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=83.46 E-value=6.6 Score=29.99 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=45.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHH
Q 006912 444 DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN--KRVQEAACSAFATLE 507 (626)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~--~~v~~~a~~al~~l~ 507 (626)
+++..+|..|+..++.++..+.+. .......++..+.+.+.|++ ...+--|...|..+-
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~-----~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSS-----YPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 568999999999999999887643 34556788888899988764 456677777777763
No 306
>PF05536 Neurochondrin: Neurochondrin
Probab=83.37 E-value=66 Score=34.15 Aligned_cols=138 Identities=12% Similarity=0.108 Sum_probs=86.7
Q ss_pred hhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCCh-HHHHHHHHHHHHHHhccchHHHHhHH-HH
Q 006912 145 INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLMPSALFVSMD-QY 222 (626)
Q Consensus 145 ~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~-~vr~~al~~l~~~~~~~~~~~~~~~~-~~ 222 (626)
...+..|+.+|..++. ++.+.. ...+..-+|.+.+.+.+.+. .+...++.||..++.. |+.-...+. +-
T Consensus 71 ~~~~~LavsvL~~f~~--~~~~a~------~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~ 141 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCR--DPELAS------SPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGA 141 (543)
T ss_pred HHHHHHHHHHHHHHcC--Chhhhc------CHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCC
Confidence 3466778888888887 333322 14467789999999988776 8999999999999854 322211111 23
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccc----hhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF----LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~----~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
++.+++.+.+ .+.....++..+..++...... -...+..+++.+...........+...++++..+...
T Consensus 142 v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 142 VPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 4555555443 4455677777777776654421 1123345555555555555555677788888887654
No 307
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.19 E-value=1e+02 Score=36.30 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc
Q 006912 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (626)
Q Consensus 477 ~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~ 555 (626)
+.++...++....+.++..|..|...+..+....|+...++++..+|-|..++++.++.+-..+-..+..+-+..|..+
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l 1617 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPL 1617 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhh
Confidence 6777777777777778999999999999999999999999999999999999998877776666666666666666544
No 308
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=82.39 E-value=47 Score=31.70 Aligned_cols=72 Identities=19% Similarity=0.120 Sum_probs=46.7
Q ss_pred HHHHHHhhhcCCCchH-HHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 006912 433 EIVAFLIPLLDDKFPL-IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (626)
Q Consensus 433 ~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (626)
.++..+...++..++. .-..||.-++++.+..|+. ...-.-...=..++..++++++.|+-.|..|+..++.
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~----~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI----NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH----HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 3666677777665554 3445677778887776642 0001112333456777888899999999999988764
No 309
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=81.96 E-value=2.7 Score=25.92 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=24.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 006912 480 VLMGLLKRILDTNKRVQEAACSAFATLE 507 (626)
Q Consensus 480 ll~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (626)
.++.+++.++++++.++..++++|.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5777888888888999999999999875
No 310
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=80.98 E-value=99 Score=34.50 Aligned_cols=77 Identities=18% Similarity=0.087 Sum_probs=45.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHHHHhcccccchH
Q 006912 444 DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLK-----RILDTNKRVQEAACSAFATLEEEAAEELAPRL 518 (626)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~-----~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l 518 (626)
+....||-....++..+..... +.|-.+++..++- ..-+.+..||..+..+|.+++..|....-.-+
T Consensus 441 ~s~~~Vrik~~~~l~~~~l~nr--------~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~~~l 512 (1697)
T KOG3687|consen 441 ESRGAVRIKVLDVLSFVLLINR--------QFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHFNSL 512 (1697)
T ss_pred cccceEEEeeHHHHHHHHhhhh--------hhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcchhH
Confidence 4566667666666666554332 3333444444322 11245789999999999999999965433334
Q ss_pred HHHHHHHHHH
Q 006912 519 EIILQHLMMA 528 (626)
Q Consensus 519 ~~i~~~l~~~ 528 (626)
-.+++.+++.
T Consensus 513 ldi~EA~~~r 522 (1697)
T KOG3687|consen 513 LDIIEAVMAR 522 (1697)
T ss_pred HHHHHHHHhc
Confidence 4444554443
No 311
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=80.97 E-value=71 Score=32.87 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHhhcCcCchHHHHH-HHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHH
Q 006912 107 RHIRSTVGTIVSVVVQLGGIAGWLELLQ-ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (626)
Q Consensus 107 ~~vr~~~~~~l~~i~~~~~~~~~~~ll~-~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l 185 (626)
-.-|-.++.++|.++..-+...+..++. .|...+++.....|..+..++.+.+......... .....+.+.+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~-------~~~~~l~~~L 173 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPS-------PPPQALSPRL 173 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCC-------ccHHHHHHHH
Confidence 3457788999999998877777888887 5999999999889999999999998887654221 1024556666
Q ss_pred HHhcCC
Q 006912 186 LQFFQS 191 (626)
Q Consensus 186 ~~~l~~ 191 (626)
...|++
T Consensus 174 ~~~L~~ 179 (441)
T PF12054_consen 174 LEILEN 179 (441)
T ss_pred HHHHcC
Confidence 666663
No 312
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.71 E-value=4.7 Score=35.52 Aligned_cols=90 Identities=19% Similarity=0.172 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc-CCcchhH
Q 006912 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA-QLPHENL 299 (626)
Q Consensus 221 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~ 299 (626)
.+++.++..+.+-+...+--|-+-+..++...++.+.+.+++++..+-..+...+.++...+++.+..+... .-....+
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 556666665554444455556666677777777888899999999999999999999999999988887544 2245677
Q ss_pred HhhhhhhHHHH
Q 006912 300 KEFLPRLVPVL 310 (626)
Q Consensus 300 ~~~l~~li~~l 310 (626)
-|+..+++|.+
T Consensus 194 VPfYRQlLp~~ 204 (262)
T KOG3961|consen 194 VPFYRQLLPVL 204 (262)
T ss_pred hhHHHHhhhhh
Confidence 79999999986
No 313
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=80.58 E-value=33 Score=28.75 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhcccccchH--HHHHHH-HHHHHhh---hhHHHHHHHHHHHHHHHH
Q 006912 477 FEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQH-LMMAFGK---YQRRNLRIVYDAIGTLAD 549 (626)
Q Consensus 477 ~~~ll~~l~~~l~-d~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~i~~~-l~~~l~~---~~~~~~~~~~~~l~~i~~ 549 (626)
-...+..+.+.++ +.++.++..|+..|..++++||..+...+ ..++.. |.+++.. ....++..+++.+.....
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 3566777888887 46899999999999999999997664321 255554 5555542 234667788899998888
Q ss_pred Hhccc
Q 006912 550 AVGFE 554 (626)
Q Consensus 550 ~~~~~ 554 (626)
.++.+
T Consensus 116 ~f~~~ 120 (141)
T cd03565 116 AFRGS 120 (141)
T ss_pred HhCCC
Confidence 87653
No 314
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=80.39 E-value=67 Score=32.23 Aligned_cols=280 Identities=11% Similarity=0.084 Sum_probs=151.0
Q ss_pred ChhHHhHHHHHHHHHhhhch--hccccCCCCCccchhhhhHHHHHHhcCCCC--hHHHHHHHHHHHHHHhccch-HHHHh
Q 006912 144 DINHMEGAMDALSKICEDIP--QVLDSDVPGLAECPINIFLPRLLQFFQSPH--TSLRKLSLGSVNQFIMLMPS-ALFVS 218 (626)
Q Consensus 144 ~~~~r~~~l~~l~~l~~~~~--~~~~~~~~~~~~~~~~~il~~l~~~l~~~~--~~vr~~al~~l~~~~~~~~~-~~~~~ 218 (626)
+.++...|+.+++.+..... ..+.. ....-++......+.+++ -.+....+.++.. +..+. .+...
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~-------d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~ 129 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSD-------DFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSD 129 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCCh-------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchh
Confidence 44677789999988875422 12221 223446667777776653 3455666666643 22332 22222
Q ss_pred H-HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcc
Q 006912 219 M-DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPH 296 (626)
Q Consensus 219 ~-~~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~ 296 (626)
. ..++..+...-+ -++..+-.+.+.++..++..+|..+..+...=++.++..+-+....+|..|+.+...+...-...
T Consensus 130 ~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~ 209 (372)
T PF12231_consen 130 RVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN 209 (372)
T ss_pred hHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh
Confidence 2 233444444433 35667778889999999999998887777766666666666667778888776655543321000
Q ss_pred hhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHH
Q 006912 297 ENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALD 376 (626)
Q Consensus 297 ~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~ 376 (626)
. .+.+.+...
T Consensus 210 ~----~~s~~~~~~------------------------------------------------------------------ 219 (372)
T PF12231_consen 210 K----ELSKSVLED------------------------------------------------------------------ 219 (372)
T ss_pred H----HHHHHHHHH------------------------------------------------------------------
Confidence 0 011111100
Q ss_pred HHHhhc-CcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHH-HHHHccCc-cchhhhHHHHHHHHhhhcCCCchHHHHHH
Q 006912 377 VLSNVF-GDEILPTLMPVIQAKLSASGDEAWKDREAAVLAL-GAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSIS 453 (626)
Q Consensus 377 ~l~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l-~~l~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a 453 (626)
+-... ++.+...+.+.+.+++.+++ -..-..-++.. ..+. +.. -.-.+++...+.....+++++++.+|..|
T Consensus 220 -~~~~~~~~~~~~~~~~~L~~mi~~~~---~~~~a~~iW~~~i~LL-~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A 294 (372)
T PF12231_consen 220 -LQRSLENGKLIQLYCERLKEMIKSKD---EYKLAMQIWSVVILLL-GSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQA 294 (372)
T ss_pred -hccccccccHHHHHHHHHHHHHhCcC---CcchHHHHHHHHHHHh-CCchhhccHhHhHHHHHHHHHhcCCCHHHHHHH
Confidence 00011 01223344445555555421 00000001110 0011 111 11236778888888889999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccC-CH----HHHHHHHHHHHHHHHH
Q 006912 454 CWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NK----RVQEAACSAFATLEEE 509 (626)
Q Consensus 454 ~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~-~~----~v~~~a~~al~~l~~~ 509 (626)
..+=..+....... .......+.-++..+...+... .. .++..+...+.+++-.
T Consensus 295 ~~aW~~liy~~~~~--~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 295 FKAWRRLIYASNPN--ELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHHHHHHhcCC--ccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 88877777643321 2234555666666666555532 23 6677777777777643
No 315
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=79.18 E-value=1.4e+02 Score=35.23 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHHccCccchhh--hHHHHHHHHhhhcCC----CchHHHHHHHHHHHHHHHHHhhhcCCCchhhh---
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYP--HLSEIVAFLIPLLDD----KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ--- 476 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~--~l~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~--- 476 (626)
-..-.+.+.+|..++.+|.+.... .++..+.+|+..|.- ....+...+=..|.+.+.++... ++|
T Consensus 452 EsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~------E~yRQI 525 (2195)
T KOG2122|consen 452 ESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATC------EDYRQI 525 (2195)
T ss_pred cchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhcc------chHHHH
Confidence 345677788888888887543322 234455666666642 23344445544555555554431 222
Q ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc
Q 006912 477 --FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (626)
Q Consensus 477 --~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~ 511 (626)
-..++..++..|++.+-.|...+|.+|-++.-.+.
T Consensus 526 LR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p 562 (2195)
T KOG2122|consen 526 LRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSP 562 (2195)
T ss_pred HHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCH
Confidence 24567778888888888888889999999875553
No 316
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.10 E-value=1.6e+02 Score=35.76 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=126.0
Q ss_pred HhhhhhC-CcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccC---ChhHHhHHHHHHHHHhhhchhccccCCCCC
Q 006912 98 LLPCLGA-ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN---DINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (626)
Q Consensus 98 L~~~l~~-~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~---~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~ 173 (626)
|...+.. ..+.+|+.++.+++.+......-....++......+.++ ++..+.+++.+++.+.+.++....
T Consensus 56 l~s~~~~~~~~p~rkL~s~~i~rl~~~gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~------ 129 (2067)
T KOG1822|consen 56 LISRLTNGAGPPTRKLISVAIARLISNGDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIG------ 129 (2067)
T ss_pred HHHHHccCCCchhHHHHHHHHHHHHhccchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhc------
Confidence 4444443 467889999999988886521112233444444444443 345667888999999888887643
Q ss_pred ccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccc--hHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 006912 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (626)
Q Consensus 174 ~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (626)
......+..+.+..+....-+|......+.+...... .........+.......+.+.+..+|..+.+|+..+...
T Consensus 130 --~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~ 207 (2067)
T KOG1822|consen 130 --RGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNL 207 (2067)
T ss_pred --chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhh
Confidence 2256677777777777777788888877777665544 222223334555566666777778999999999988876
Q ss_pred Cccch-hhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 252 RPSFL-EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 252 ~~~~~-~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
.+..+ ...++....++.+.......++|..-.++++.+...
T Consensus 208 ~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~ 249 (2067)
T KOG1822|consen 208 GGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLAL 249 (2067)
T ss_pred cCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhc
Confidence 66554 445566777777778888888888888888887554
No 317
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=78.59 E-value=32 Score=37.46 Aligned_cols=94 Identities=19% Similarity=0.140 Sum_probs=70.6
Q ss_pred hhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhh-HHHHHHHHHHHhc-cCCHHHHHHHHHHHHHH
Q 006912 429 PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-FEKVLMGLLKRIL-DTNKRVQEAACSAFATL 506 (626)
Q Consensus 429 ~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~ll~~l~~~l~-d~~~~v~~~a~~al~~l 506 (626)
|+-..++..+-..+.. +.-|..++..+|.+...-+. ..... -.+++..|+++++ |.+..+-..|+.+|..+
T Consensus 66 P~~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~-----~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Liml 138 (668)
T PF04388_consen 66 PHDKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPP-----WLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIML 138 (668)
T ss_pred ccHHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCc-----hHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 5555667766666665 45677777888877764322 22222 2478889999987 77889999999999999
Q ss_pred HHHhcccccchHHHHHHHHHHHH
Q 006912 507 EEEAAEELAPRLEIILQHLMMAF 529 (626)
Q Consensus 507 ~~~~~~~~~~~l~~i~~~l~~~l 529 (626)
+-.++..+.+|++.++..+.+++
T Consensus 139 LP~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 139 LPHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred hccccchhhHHHHHHHHHHHHHH
Confidence 99888899999999999888877
No 318
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=78.51 E-value=72 Score=31.46 Aligned_cols=234 Identities=12% Similarity=0.095 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhc----
Q 006912 66 EIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD---- 141 (626)
Q Consensus 66 ~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~---- 141 (626)
..++.|++++-+..+ +++.+..+ -...-+++..+.+..||+++..-+-.+++.+ ..+.+.+.+.++++
T Consensus 39 k~k~lasq~ip~~fk-~fp~la~~----a~da~~d~~ed~d~~ir~qaik~lp~fc~~d---~~~rv~d~l~qLLnk~sl 110 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFK-HFPSLADE----AIDAQLDLCEDDDVGIRRQAIKGLPLFCKGD---ALSRVNDVLVQLLNKASL 110 (460)
T ss_pred HHHHHHHHHHHHHHh-hCchhhhH----HHHhhhccccccchhhHHHHHhccchhccCc---hhhhhHHHHHHHHHHHHH
Confidence 445677788876653 34444432 2234455667889999999988888888764 33334444444332
Q ss_pred --------cCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhcc--
Q 006912 142 --------SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM-- 211 (626)
Q Consensus 142 --------~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~-- 211 (626)
-.+..+|+.++.-+..=+..++..+.. +..-..++..+...|.|.+.+--..-++.|.++-..-
T Consensus 111 ~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~------kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k 184 (460)
T KOG2213|consen 111 TGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLT------KEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTK 184 (460)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhh------hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCC
Confidence 135567777666654433333322211 1223567777778888876654444455554443322
Q ss_pred -chHHHHhHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHh----hCc-cchhhhH-HHHHHHHHhhccCC-ChHHHHH
Q 006912 212 -PSALFVSMDQYLQGLFLL--SNDPSAEVRKLVCAAFNLLIE----VRP-SFLEPHL-RNLFEYMLQVNKDT-DDDVALE 281 (626)
Q Consensus 212 -~~~~~~~~~~~l~~l~~~--~~~~~~~~~~~~~~~l~~l~~----~~~-~~~~~~l-~~l~~~~~~~~~~~-~~~v~~~ 281 (626)
|..-...+..+...+..+ ++-.+.++...-+.|+..-+- ..| ..+..|+ ..+++. .-+. .++.+..
T Consensus 185 ~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~----~fdkl~e~rkL~ 260 (460)
T KOG2213|consen 185 AGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH----HFDKLTEERKLD 260 (460)
T ss_pred CCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc----ccccchHHHHHH
Confidence 211111122233333332 444566666666666654332 211 1121222 122222 1111 1334444
Q ss_pred HHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCc
Q 006912 282 ACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYAD 318 (626)
Q Consensus 282 a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~ 318 (626)
-+..+..++.. ...+..+..+++++..+..+|...+
T Consensus 261 lLK~lAEMss~-ttaq~a~q~Lpsi~elLk~yMpa~k 296 (460)
T KOG2213|consen 261 LLKALAEMSSY-TTAQAARQMLPSIVELLKEYMPAPK 296 (460)
T ss_pred HHHHHHHhCcc-chHHHHHHHHHHHHHHHHHhcccCC
Confidence 44444444433 2345566778888888888877653
No 319
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=77.66 E-value=7.1 Score=29.59 Aligned_cols=56 Identities=30% Similarity=0.334 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (626)
-..|.+++.+|+.+....+-.+-++++.++..+.....| ...|+..+-.+++.+=+
T Consensus 3 ~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkr 58 (90)
T PF11919_consen 3 LRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKR 58 (90)
T ss_dssp -HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHH
Confidence 457899999999999998877788999999887777775 56678888777776654
No 320
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=76.21 E-value=32 Score=33.62 Aligned_cols=109 Identities=14% Similarity=0.076 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhh-HHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-FEKVLMGL 484 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~ll~~l 484 (626)
|.....+|.-++.-.++. .+.+..|..++++.++.|...|+..++.+...|+.. .+.+. -..+...+
T Consensus 26 W~~IlDvCD~v~~~~~~~--------kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~----~r~EVsSr~F~~el 93 (462)
T KOG2199|consen 26 WSLILDVCDKVGSDPDGG--------KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR----FRLEVSSRDFTTEL 93 (462)
T ss_pred HHHHHHHHHhhcCCCccc--------HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH----HHHHHhhhhHHHHH
Confidence 988877777665443322 335778888999999999999999999999888753 12222 23334444
Q ss_pred HHHhc-cCCHHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHH
Q 006912 485 LKRIL-DTNKRVQEAACSAFATLEEEAAEE-LAPRLEIILQHLM 526 (626)
Q Consensus 485 ~~~l~-d~~~~v~~~a~~al~~l~~~~~~~-~~~~l~~i~~~l~ 526 (626)
...+. ...+.|+......+..+.+.++.+ -...+..+++.|.
T Consensus 94 ~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~klk 137 (462)
T KOG2199|consen 94 RALIESKAHPKVCEKMRDLVKEWSEEFKKDPSLSLISALYKKLK 137 (462)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 44455 446888888888888888877543 1233444444443
No 321
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=75.95 E-value=46 Score=32.65 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=65.7
Q ss_pred cccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH--HHHHHHHhhh
Q 006912 364 VWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPL 441 (626)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~l~~~l~~~ 441 (626)
.|.+ ....++.+.... +.-...+..+.+.+++.+ +.+..-|+..++.+..+|++.+..-+ .+....+...
T Consensus 25 nW~~---IlDvCD~v~~~~--~~~kd~lk~i~KRln~~d---phV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al 96 (462)
T KOG2199|consen 25 NWSL---ILDVCDKVGSDP--DGGKDCLKAIMKRLNHKD---PHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRAL 96 (462)
T ss_pred cHHH---HHHHHHhhcCCC--cccHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHH
Confidence 3654 334444443333 233467788899999998 99999999999999999987664222 1233334444
Q ss_pred cC-CCchHHHHHHHHHHHHHHHHHhh
Q 006912 442 LD-DKFPLIRSISCWTLSRFSKFIVQ 466 (626)
Q Consensus 442 l~-d~~~~vr~~a~~~l~~l~~~~~~ 466 (626)
+. ..++.|+.....++..+++.+..
T Consensus 97 ~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 97 IESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 44 67899999999999999987764
No 322
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=75.75 E-value=60 Score=30.51 Aligned_cols=139 Identities=19% Similarity=0.179 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhc----ccccchHHHHHHHHHHHHhhh-hH---HHHH--HHHHHHH
Q 006912 477 FEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAA----EELAPRLEIILQHLMMAFGKY-QR---RNLR--IVYDAIG 545 (626)
Q Consensus 477 ~~~ll~~l~~~l~d-~~~~v~~~a~~al~~l~~~~~----~~~~~~l~~i~~~l~~~l~~~-~~---~~~~--~~~~~l~ 545 (626)
+..+-..++..|.. .+...-..+..++..+|+.+- +.+......-+..++..+... .. ..+| ..=-++.
T Consensus 94 i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~ 173 (255)
T PF10350_consen 94 IEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLIL 173 (255)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHH
Confidence 34444444443332 345666778888888888763 344445556666666666665 33 2344 2333444
Q ss_pred HHHHHhccccCChhhhhhhhHHHHHHHhcCCCC--CC--cc--chHHHHHHHHHHH--hccccccchHHHHHHHHHHHHH
Q 006912 546 TLADAVGFELNQPVYLDILMPPLIAKWQQLPNS--DK--DL--FPLLECFTSIAQA--LGAGFTQFAQPVFQRCINIIQT 617 (626)
Q Consensus 546 ~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~--~~--~~~l~~~~~l~~~--~g~~f~~~~~~i~~~l~~~l~~ 617 (626)
.+..+-+..- + +.++..|..|++..+..... +. +. ..+++|+..+.+. ++....||+.+.+...++.+.+
T Consensus 174 aiL~ae~~~~-~-~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s 251 (255)
T PF10350_consen 174 AILSAEPSNS-R-PLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSS 251 (255)
T ss_pred HHHhcCCCcc-h-hHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 4444433321 1 47788888888776643211 11 22 4778888888764 6778889999988887776654
No 323
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=75.64 E-value=5.7 Score=28.66 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHccCccchhhhHH--HHHHHHhhhcC-CCchHHHHHHHHHHHHHHHH
Q 006912 408 DREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLD-DKFPLIRSISCWTLSRFSKF 463 (626)
Q Consensus 408 ~r~aal~~l~~l~~~~~~~~~~~l~--~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~ 463 (626)
...++++++|.++..-.. .++++ ++++.+++... ++...+|-.|++++|-++.-
T Consensus 3 ~lKaaLWaighIgss~~G--~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLG--IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHHhHhcChHH--HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 468899999999875421 12333 47787777765 67889999999999999864
No 324
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=75.34 E-value=3.6 Score=22.89 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q 006912 449 IRSISCWTLSRFSK 462 (626)
Q Consensus 449 vr~~a~~~l~~l~~ 462 (626)
||..|+++||++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78999999998875
No 325
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=74.77 E-value=20 Score=28.78 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=55.2
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHh----c--CCCChHHHHH
Q 006912 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF----F--QSPHTSLRKL 199 (626)
Q Consensus 126 ~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~----l--~~~~~~vr~~ 199 (626)
+....+.+..|.+.+.+.+|.+...++.+|-.+++.+++.+..++. -..++..++.. . .+.+..||..
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~------~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVA------SNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHH------HhHHHHHHHHhhccccccCCCChHHHHH
Confidence 5667889999999999999999999999999999999876543221 12233333221 1 1346789999
Q ss_pred HHHHHHHHH
Q 006912 200 SLGSVNQFI 208 (626)
Q Consensus 200 al~~l~~~~ 208 (626)
+...+..+.
T Consensus 106 ~~~l~~~w~ 114 (115)
T cd00197 106 AIELVQLWA 114 (115)
T ss_pred HHHHHHHHh
Confidence 988877654
No 326
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=74.35 E-value=33 Score=27.46 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=51.3
Q ss_pred chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHH--HHHHHhh----hc--CCCchHHHHHHHHH
Q 006912 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIP----LL--DDKFPLIRSISCWT 456 (626)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~--l~~~l~~----~l--~d~~~~vr~~a~~~ 456 (626)
.....++..+.+.+++++ |.+..-|+..+-.+..++++.+...+.. .+..++. .. .+.+..||..+...
T Consensus 33 ~~~~~~~~~l~kRl~~~~---~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l 109 (115)
T cd00197 33 VGPKEAVDAIKKRINNKN---PHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIEL 109 (115)
T ss_pred ccHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHH
Confidence 445678888999999988 9999999999999999997665433322 1112211 11 24578999998877
Q ss_pred HHHH
Q 006912 457 LSRF 460 (626)
Q Consensus 457 l~~l 460 (626)
+..+
T Consensus 110 ~~~w 113 (115)
T cd00197 110 VQLW 113 (115)
T ss_pred HHHH
Confidence 7654
No 327
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=74.08 E-value=1.6e+02 Score=33.37 Aligned_cols=165 Identities=15% Similarity=0.157 Sum_probs=90.2
Q ss_pred HHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHhccchHHHHhHH--HHH
Q 006912 147 HMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYL 223 (626)
Q Consensus 147 ~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~l 223 (626)
..+.++.+|..++...|+... -+.. +..+-..++.++..+.. .++.+...+++.+.....+.+ ..+.+. ..+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlas-vfgS--e~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~--Cv~~~a~~~vL 1815 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLAS-VFGS--EILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE--CVTDLATCNVL 1815 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhh-hccc--hhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH--HHHHHHhhhHH
Confidence 456788999999988875321 0000 12234456666666654 678899999998877766533 111111 234
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHH--HHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHh
Q 006912 224 QGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKE 301 (626)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 301 (626)
..++.++. +-+..|..++..|-.+..... ..+..+. .++..+--......+..|.++.+.+..+.-.+.....+.-
T Consensus 1816 ~~LL~lLH-S~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~I 1893 (2235)
T KOG1789|consen 1816 TTLLTLLH-SQPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTI 1893 (2235)
T ss_pred HHHHHHHh-cChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceee
Confidence 44555543 457889999998887765422 1111111 1111111123445677899999999888655322222322
Q ss_pred hhhhhHHHH-hhhcccCc
Q 006912 302 FLPRLVPVL-LSNMIYAD 318 (626)
Q Consensus 302 ~l~~li~~l-~~~l~~~~ 318 (626)
-+-+++|.. ...+.+.+
T Consensus 1894 TL~kFLP~~f~d~~RD~P 1911 (2235)
T KOG1789|consen 1894 TLIKFLPEIFADSLRDSP 1911 (2235)
T ss_pred ehHHhchHHHHHHHhcCH
Confidence 333444433 33444433
No 328
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.06 E-value=19 Score=36.85 Aligned_cols=76 Identities=16% Similarity=0.115 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccch--HHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhcc
Q 006912 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVGF 553 (626)
Q Consensus 478 ~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~--l~~i~~~l~~~l~~~--~~~~~~~~~~~l~~i~~~~~~ 553 (626)
..++-.|.+.+++.++.++..|+..|..++++||..|.-. -..+++.++....+. ..++++.++..|-..-++++.
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 4778889999999899999999999999999999876421 235555556555554 346778999999999888876
No 329
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=73.86 E-value=27 Score=28.27 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=50.8
Q ss_pred chHHhHHHHHHHhhc-CCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHH
Q 006912 385 EILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (626)
Q Consensus 385 ~~~~~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (626)
++++.++|++.+.+. +.. ...|.++++.++.++...+=. .+.+..++..+......... ...++.++..++.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~---~d~~~a~ymIl~~La~k~~L~-~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q 74 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSS---PDLQAAAYMILSVLASKVPLS-DEVLNALMESILKNWTQETV--QRQALICLIVLCQ 74 (121)
T ss_pred cHHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHHHhhcCCc-HHHHHHHHHHHHhccccchh--HHHHHHHHHHHHH
Confidence 457789999999998 555 789999999999999876411 24455566666666554444 4566777777764
No 330
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=73.11 E-value=33 Score=35.73 Aligned_cols=105 Identities=16% Similarity=0.106 Sum_probs=73.8
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCcc--chhhhHHHH
Q 006912 186 LQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS--FLEPHLRNL 263 (626)
Q Consensus 186 ~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~l 263 (626)
+....|.++.+|..++..++.++...|+.+.... +++.....+.|.++.+|..+...+..++...|. .+...++.+
T Consensus 281 vsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRF 358 (740)
T COG5537 281 VSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERF 358 (740)
T ss_pred hhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 3445677889999999999999999888776533 466666678888999999999999999987653 344444444
Q ss_pred HHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 264 FEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
-..+++......+-||..+++.+..+...
T Consensus 359 k~rILE~~r~D~d~VRi~sik~l~~lr~l 387 (740)
T COG5537 359 KDRILEFLRTDSDCVRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHh
Confidence 44445443333333888888776665443
No 331
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=73.11 E-value=41 Score=30.00 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=47.7
Q ss_pred HHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHh
Q 006912 392 PVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (626)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (626)
+.+.....+++. |..|.+....+..+.. ..+...++..+...+.|++..||.+..|+|..++...+
T Consensus 108 ~~~~~w~~s~~~--~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENE--WVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcH--HHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 677788888762 5555554444443433 24566778888888889999999999999999987644
No 332
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=72.92 E-value=55 Score=27.41 Aligned_cols=91 Identities=8% Similarity=0.174 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhcCcchHHhHHHHHHHhhcC-CCCCChhHHHHHHHHHHHHHccCccchhhhHH--HHHHH-HhhhcC---
Q 006912 371 SAAALDVLSNVFGDEILPTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAF-LIPLLD--- 443 (626)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~l~~~-l~~~l~--- 443 (626)
.....+.+.. +..--...+..+.+.+++ ++ +.+..-|+..+..++.+|+..+...+. +.+.. +...+.
T Consensus 22 ileicD~In~--~~~~~k~a~ralkkRl~~~~n---~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~ 96 (141)
T cd03565 22 NMEICDIINE--TEDGPKDAVRALKKRLNGNKN---HKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKN 96 (141)
T ss_pred HHHHHHHHhC--CCCcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccC
Confidence 4444554432 222223567778888864 56 777777899999999999865532221 12332 333333
Q ss_pred CCchHHHHHHHHHHHHHHHHHhh
Q 006912 444 DKFPLIRSISCWTLSRFSKFIVQ 466 (626)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~ 466 (626)
+.+..|+..++..+..++..+.+
T Consensus 97 ~~~~~Vk~kil~li~~W~~~f~~ 119 (141)
T cd03565 97 NPPTIVQEKVLALIQAWADAFRG 119 (141)
T ss_pred CCcHHHHHHHHHHHHHHHHHhCC
Confidence 35678999999999999988864
No 333
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=72.32 E-value=80 Score=29.03 Aligned_cols=110 Identities=11% Similarity=0.079 Sum_probs=71.2
Q ss_pred HHHHHHhcCC-CChHHHHHHHHHHHHHHhccchHHHHhH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCc-----
Q 006912 182 LPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP----- 253 (626)
Q Consensus 182 l~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~----- 253 (626)
.|.+-....+ +.+.+|..++..++.++.....+....+ .+++|...+.+..+++..+..|...+.++.-...
T Consensus 126 YpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~Yi 205 (293)
T KOG3036|consen 126 YPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYI 205 (293)
T ss_pred HHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHH
Confidence 3333333333 5678999999999999988776655443 2678888888887787777777777766654322
Q ss_pred ----cchhhhHHHHHHHH-HhhccCCChHHHHHHHhHHHHhhcc
Q 006912 254 ----SFLEPHLRNLFEYM-LQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 254 ----~~~~~~l~~l~~~~-~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
+.|. ++..++.-+ .+..+..+...-..++.+...++.+
T Consensus 206 Cqt~eRF~-av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 206 CQTAERFS-AVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHhHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 2221 222333333 2344556676777888888888876
No 334
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=71.92 E-value=65 Score=27.79 Aligned_cols=149 Identities=14% Similarity=0.128 Sum_probs=72.6
Q ss_pred HHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHH-h
Q 006912 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI-M 209 (626)
Q Consensus 131 ~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~-~ 209 (626)
++-|.++.+++..+ ++......|+.++......+-..- +....++...+...- .+.+ ..|+..+..+. .
T Consensus 3 eikplLIsCL~~q~--~k~s~~KiL~~iVs~Va~~v~~~~----~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~ 72 (174)
T PF04510_consen 3 EIKPLLISCLTMQE--TKESDFKILRRIVSHVAYEVFDLQ----EGGWDELSDCILSLS-ENEP---VKAFHIFICLPMP 72 (174)
T ss_pred chHHHHHHHHHhhc--ccHhHHHHHHHHHHHHHHHHHhcC----CCCchhHHHHHHHhh-ccch---HHHHHHHHhCCch
Confidence 34577788887554 334566777777766555432100 112333333333211 2222 34454454444 3
Q ss_pred ccchHHHHhHHHHHHHHHHhcCCCCH-HHH--HHHHH----HHHHHHhhCccchhhhHHHHHHHHHhh----ccCCCh-H
Q 006912 210 LMPSALFVSMDQYLQGLFLLSNDPSA-EVR--KLVCA----AFNLLIEVRPSFLEPHLRNLFEYMLQV----NKDTDD-D 277 (626)
Q Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~--~~~~~----~l~~l~~~~~~~~~~~l~~l~~~~~~~----~~~~~~-~ 277 (626)
...+.+.+.+.++++.+.+.+.+|.+ ++. ..|+. ....+.+.... ...+.++++.+++. .....+ .
T Consensus 73 l~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~--~~~vk~L~~~mv~Sv~elV~~g~E~~ 150 (174)
T PF04510_consen 73 LYGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMR--VDLVKELLPKMVKSVKELVERGMEVG 150 (174)
T ss_pred hhhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 33456677888888888888877632 222 22322 22223332221 23444555555444 333333 5
Q ss_pred HHHHHHhHHHHhhc
Q 006912 278 VALEACEFWHSYFE 291 (626)
Q Consensus 278 v~~~a~~~l~~l~~ 291 (626)
....|++-+-.+.+
T Consensus 151 ~l~rgl~~~e~~v~ 164 (174)
T PF04510_consen 151 FLRRGLRDFESFVS 164 (174)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665555443
No 335
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=71.00 E-value=91 Score=29.09 Aligned_cols=100 Identities=9% Similarity=0.056 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHHHHhccchHHHHhHH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh---------CccchhhhHH
Q 006912 193 HTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV---------RPSFLEPHLR 261 (626)
Q Consensus 193 ~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~~~~~~l~ 261 (626)
.+.+|..++..++.++.....+....+- +++|...+.+..+++-.+..|.-.+.++... .++.|.. +.
T Consensus 109 ~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~a-v~ 187 (262)
T PF04078_consen 109 FEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFA-VA 187 (262)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHH-HH
T ss_pred cchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHH-HH
Confidence 4578888888888888765555444432 5667777766655555555565555555432 2233322 22
Q ss_pred HHHHHHH-hhccCCChHHHHHHHhHHHHhhccC
Q 006912 262 NLFEYML-QVNKDTDDDVALEACEFWHSYFEAQ 293 (626)
Q Consensus 262 ~l~~~~~-~~~~~~~~~v~~~a~~~l~~l~~~~ 293 (626)
.++..++ ....+.+...-...+.+...+++++
T Consensus 188 ~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 188 MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 3333333 3345667777788888888898874
No 336
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.19 E-value=2.4e+02 Score=33.68 Aligned_cols=235 Identities=13% Similarity=0.126 Sum_probs=119.1
Q ss_pred ChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHH----hh
Q 006912 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVV----QL 123 (626)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~----~~ 123 (626)
+|..-+-.+... +..+++|.+...+....++.-|+.+ ...+-..-.+....+-...-..+..+. ..
T Consensus 1036 ~fl~Pfe~im~~--s~s~~Irelv~rC~~~nikSGWk~i--------f~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~ 1105 (1514)
T KOG0929|consen 1036 DFLRPFEHIMKR--SSSAEIRELVVRCISSNIKSGWKNI--------FKIFTTAASDSSKNIVELAFETVSKILQELFEN 1105 (1514)
T ss_pred hhcCcchHHhhc--cCcchhHHHHHhhhhhhhhhhhhHH--------HHHHHHhhccchhhHHHHhHHHHHHHHHHhhhh
Confidence 343334444443 7778888888888876666667651 111111112233333333323333222 22
Q ss_pred cCc---CchHHHHHHHHHHhcc-CChhHHhHHHHHHHHHhhhchhcc-ccCCC----CCccchhhhhHHHHHHh---cCC
Q 006912 124 GGI---AGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVL-DSDVP----GLAECPINIFLPRLLQF---FQS 191 (626)
Q Consensus 124 ~~~---~~~~~ll~~l~~~l~~-~~~~~r~~~l~~l~~l~~~~~~~~-~~~~~----~~~~~~~~~il~~l~~~---l~~ 191 (626)
..+ ..+.+.++.+.....+ ..++.-..++..+...+....+.. ..... +.........+|.++++ ..+
T Consensus 1106 ~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~ 1185 (1514)
T KOG0929|consen 1106 VFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIIND 1185 (1514)
T ss_pred hchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhc
Confidence 222 2334445555554443 223333334444444433333220 00000 00011224445554432 335
Q ss_pred CChHHHHHHHHHHHHHHhccchHHHHhH-HHHHHHHHHhcC----CCC-----H---HHHHHHHHHHHHHHhhCccchhh
Q 006912 192 PHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSN----DPS-----A---EVRKLVCAAFNLLIEVRPSFLEP 258 (626)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~----~~~-----~---~~~~~~~~~l~~l~~~~~~~~~~ 258 (626)
....+|..+++.+..+...-++.+...+ ..++..++..+. +.+ + ..-..|+..++.+...+.+.+..
T Consensus 1186 ~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~ 1265 (1514)
T KOG0929|consen 1186 YRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNN 1265 (1514)
T ss_pred cHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999988876555443322 222333333322 111 1 12334556666666677777777
Q ss_pred hHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 259 ~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
.++.++..+..+...++..+...+..++..+...
T Consensus 1266 lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~ 1299 (1514)
T KOG0929|consen 1266 LLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSS 1299 (1514)
T ss_pred HHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHh
Confidence 7778887778888877777777777887777654
No 337
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=70.11 E-value=81 Score=28.14 Aligned_cols=154 Identities=15% Similarity=0.151 Sum_probs=88.3
Q ss_pred hHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHH
Q 006912 430 HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK--RVQEAACSAFATLE 507 (626)
Q Consensus 430 ~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~--~v~~~a~~al~~l~ 507 (626)
.+.+++..+++.....-.+||..|..++.++...-...+ ..-++. +.+...+..++. ..-..+..++..++
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~---~~ip~~----~~L~~i~~~~~~~~~~w~~~~~~F~~l~ 76 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTI---PHIPHR----EELQDIFPSESEASLNWSSSSEYFPRLV 76 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc---cCCCcH----HHHHHHcccccccccccCCHHHHHHHHH
Confidence 344556666666556668899999999988883221100 011122 233333322211 11222344444444
Q ss_pred HHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCCCCccchHHH
Q 006912 508 EEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLE 587 (626)
Q Consensus 508 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 587 (626)
.-. .+..|...++..+..-.....+...+.+..+|...+...... +.-...++..++..++....+++-...+++
T Consensus 77 ~LL--~~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~---~~~~~~v~~~l~~il~~~~~~dRv~vP~l~ 151 (193)
T PF12612_consen 77 KLL--DLPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDS---PEELEQVLSDLLSILKENLRNDRVVVPLLK 151 (193)
T ss_pred HHh--ccHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHhCCCCCeeecHHH
Confidence 322 123577788888887777766777777777777777654222 245667777777777755444555568888
Q ss_pred HHHHHHHH
Q 006912 588 CFTSIAQA 595 (626)
Q Consensus 588 ~~~~l~~~ 595 (626)
++..+...
T Consensus 152 tl~~Ll~~ 159 (193)
T PF12612_consen 152 TLDFLLSS 159 (193)
T ss_pred HHHHHHhC
Confidence 88777664
No 338
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=70.01 E-value=1.1e+02 Score=29.43 Aligned_cols=155 Identities=11% Similarity=0.148 Sum_probs=89.6
Q ss_pred HHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcC---chHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccC
Q 006912 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD 169 (626)
Q Consensus 93 ~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~---~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~ 169 (626)
.+...|+.+..+ .+.+--..+..+....+...-. -+.+-+......++.++.++-.-|...+..++.........
T Consensus 126 e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaE- 203 (342)
T KOG1566|consen 126 EILDNLVKGYEN-TPEIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAE- 203 (342)
T ss_pred HHHHHHHhhhcc-chHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHH-
Confidence 444444544222 3444445555555555442111 11222334445555666666556666666666554322110
Q ss_pred CCCCccchhhhhHHHHH-HhcCCCChHHHHHHHHHHHHHHhccch--HHHHhHH--HHHHHHHHhcCCCCHHHHHHHHHH
Q 006912 170 VPGLAECPINIFLPRLL-QFFQSPHTSLRKLSLGSVNQFIMLMPS--ALFVSMD--QYLQGLFLLSNDPSAEVRKLVCAA 244 (626)
Q Consensus 170 ~~~~~~~~~~~il~~l~-~~l~~~~~~vr~~al~~l~~~~~~~~~--~~~~~~~--~~l~~l~~~~~~~~~~~~~~~~~~ 244 (626)
.+....+.+++... ..+.+.+.-.|..+++.++.+...-|. ....++. .-+..+..++.+++.+++-+|+..
T Consensus 204 ---fl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhv 280 (342)
T KOG1566|consen 204 ---FLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHV 280 (342)
T ss_pred ---HHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHH
Confidence 11122344445533 456778889999999999998866543 2333333 557888889999999999999999
Q ss_pred HHHHHhhC
Q 006912 245 FNLLIEVR 252 (626)
Q Consensus 245 l~~l~~~~ 252 (626)
+..++.+.
T Consensus 281 FKvfvAnp 288 (342)
T KOG1566|consen 281 FKVFVANP 288 (342)
T ss_pred HHHHhcCC
Confidence 88887654
No 339
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=69.35 E-value=1e+02 Score=29.05 Aligned_cols=145 Identities=13% Similarity=0.128 Sum_probs=82.8
Q ss_pred hHHHHHHHhhcCCCC--CChhHHHHHHHHHHHHHccCccchhhhHHHHHHH-HhhhcCCCchHHHHHHHHHHHHHHHHHh
Q 006912 389 TLMPVIQAKLSASGD--EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAF-LIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (626)
Q Consensus 389 ~l~~~l~~~l~~~~~--~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~-l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (626)
..+|.+...+.+++. .+ .........++.+++.-+ .+.+..++.. ....+++.+..++..+ ..+++.+
T Consensus 111 a~LP~ll~~~d~~~~i~~~-~~~~~~A~~La~~a~~~~---~~~La~il~~ya~~~fr~~~dfl~~v~----~~l~~~f- 181 (262)
T PF14225_consen 111 ALLPRLLHAFDDPNPIQPD-QECIEIAEALAQVAEAQG---LPNLARILSSYAKGRFRDKDDFLSQVV----SYLREAF- 181 (262)
T ss_pred HHHHHHHHHhccccccccc-HHHHHHHHHHHHHHHhCC---CccHHHHHHHHHhcCCCCHHHHHHHHH----HHHHHHh-
Confidence 345666666655430 01 223333455666664322 3455555543 3334445444444433 2333333
Q ss_pred hhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 006912 466 QDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIG 545 (626)
Q Consensus 466 ~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~ 545 (626)
.+++-.+++..++..+.+..+.+|..+...|..++....-. .|+-+.++..+.++++..- -..|++.+.
T Consensus 182 -------~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~---~~eAL~VLd 250 (262)
T PF14225_consen 182 -------FPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTDL---WMEALEVLD 250 (262)
T ss_pred -------CchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCcc---HHHHHHHHH
Confidence 24555677778888888888999999999999998875322 4466777777777776532 234455555
Q ss_pred HHHHHhcc
Q 006912 546 TLADAVGF 553 (626)
Q Consensus 546 ~i~~~~~~ 553 (626)
.++...|.
T Consensus 251 ~~v~~s~s 258 (262)
T PF14225_consen 251 EIVTRSGS 258 (262)
T ss_pred HHHhhccc
Confidence 55554443
No 340
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=68.92 E-value=1.3e+02 Score=29.92 Aligned_cols=117 Identities=12% Similarity=0.085 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccC
Q 006912 194 TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD 273 (626)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~ 273 (626)
.++....+.+|..++.+-.......-+.++..+...+.. ...+.++.+|.-.+-..|..+.+.++.++.-+-+....
T Consensus 211 ~D~~~~~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt 287 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISYHSHFSKQEQDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTT 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Confidence 467777788888887663322222233556666665554 23456667776666667777777777777665544433
Q ss_pred CChHHHHHHHhHHHHhhccC-Ccc-hhHHhhhhhhHHHHhhhcc
Q 006912 274 TDDDVALEACEFWHSYFEAQ-LPH-ENLKEFLPRLVPVLLSNMI 315 (626)
Q Consensus 274 ~~~~v~~~a~~~l~~l~~~~-~~~-~~~~~~l~~li~~l~~~l~ 315 (626)
. .+....+||+..+++.+ ... +-..+....+..++++++.
T Consensus 288 ~--~~Ai~ILEFLs~L~~lP~~ly~nF~~~~y~~VF~I~l~Y~~ 329 (356)
T PF03542_consen 288 P--NMAIHILEFLSSLSRLPNHLYSNFTEDEYKRVFAIALPYTQ 329 (356)
T ss_pred h--hhHHHHHHHHHHHhhCcHHHhcCCCHHHHHHHHHHHhhccc
Confidence 3 35667899999998875 322 2233455667777766654
No 341
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=68.82 E-value=85 Score=27.92 Aligned_cols=76 Identities=20% Similarity=0.144 Sum_probs=56.7
Q ss_pred HHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhccccc
Q 006912 436 AFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELA 515 (626)
Q Consensus 436 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~ 515 (626)
+.+..-..++++.+|++++.++..+... ..+...++..+-..++|++..||.+..++|..+....++...
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~ 177 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK----------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVI 177 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 6677777899999999998777555432 245677777777778888899999999999999887555544
Q ss_pred chHHHH
Q 006912 516 PRLEII 521 (626)
Q Consensus 516 ~~l~~i 521 (626)
+|+...
T Consensus 178 ~~l~~~ 183 (197)
T cd06561 178 AFLEKN 183 (197)
T ss_pred HHHHHH
Confidence 444433
No 342
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=67.87 E-value=1.3e+02 Score=29.78 Aligned_cols=92 Identities=11% Similarity=0.072 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Q 006912 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLM 526 (626)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~ 526 (626)
..+......+|+.+..+-... .+..-+.++..+..++.+. ....+..||.-.+-..+..+.++++.++..|.
T Consensus 211 ~D~~~~~~~~Ls~LisYh~~~-----~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs 282 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISYHSHF-----SKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKLS 282 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456666667777776654322 2334567777777777652 34557777777777778888899999988876
Q ss_pred HHHhhhhHHHHHHHHHHHHHHH
Q 006912 527 MAFGKYQRRNLRIVYDAIGTLA 548 (626)
Q Consensus 527 ~~l~~~~~~~~~~~~~~l~~i~ 548 (626)
+......- --.++|-|+.++
T Consensus 283 ~i~tt~~~--Ai~ILEFLs~L~ 302 (356)
T PF03542_consen 283 KISTTPNM--AIHILEFLSSLS 302 (356)
T ss_pred hhccchhh--HHHHHHHHHHHh
Confidence 65544221 114566666554
No 343
>PF14961 BROMI: Broad-minded protein
Probab=65.01 E-value=89 Score=35.87 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=56.7
Q ss_pred HhHhhhhh-CCcHHHHHHHHHHHHHHHhhc--CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhcc
Q 006912 96 SELLPCLG-AADRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (626)
Q Consensus 96 ~~L~~~l~-~~~~~vr~~~~~~l~~i~~~~--~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~ 166 (626)
+.+++.+. +....||..+.+.+..+-..+ ..+.|+.+-..|...+.|+|+.+...++....+.+...+..+
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 44555554 456789999888877765544 568999999999999999999999999999999888776554
No 344
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=64.83 E-value=1.3e+02 Score=28.45 Aligned_cols=173 Identities=15% Similarity=0.121 Sum_probs=96.5
Q ss_pred CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCC-CCCccchhhhhHHHHHHhcCCCC-----hHHHHHH
Q 006912 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV-PGLAECPINIFLPRLLQFFQSPH-----TSLRKLS 200 (626)
Q Consensus 127 ~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~-~~~~~~~~~~il~~l~~~l~~~~-----~~vr~~a 200 (626)
+.++++-+.+.+.+.+++ .-+.++..+..+.....+.+.... .+++ ..+-..+|.++..+.+++ +.++ .+
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll-~~~la~LP~ll~~~d~~~~i~~~~~~~-~~ 135 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLL-FLLLALLPRLLHAFDDPNPIQPDQECI-EI 135 (262)
T ss_pred CCchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHH-HHHHHHHHHHHHHhcccccccccHHHH-HH
Confidence 677889999999998765 345578888888776554433222 1211 335667888888888876 3333 44
Q ss_pred HHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHH
Q 006912 201 LGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVAL 280 (626)
Q Consensus 201 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~ 280 (626)
...+..+++..+ .+.+..++..+.+.--....+.-..++..+. +.+ +-.+--+++.+++..+.+.-..++.
T Consensus 136 A~~La~~a~~~~---~~~La~il~~ya~~~fr~~~dfl~~v~~~l~---~~f---~P~~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 136 AEALAQVAEAQG---LPNLARILSSYAKGRFRDKDDFLSQVVSYLR---EAF---FPDHEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHHHHHHhCC---CccHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HHh---CchhHHHHHHHHHHHHhCCcHHHHH
Confidence 466666664321 1223333333333211122223333333332 221 1123345666777777777777899
Q ss_pred HHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcc
Q 006912 281 EACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMI 315 (626)
Q Consensus 281 ~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~ 315 (626)
.+++++..+...-... +++...++..+++.++
T Consensus 207 ~~L~iL~~ll~~~d~~---~~~~~dlispllrlL~ 238 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMR---SPHGADLISPLLRLLQ 238 (262)
T ss_pred HHHHHHHHHhccccCC---CCcchHHHHHHHHHhC
Confidence 9999888887652111 2355556666655543
No 345
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=63.85 E-value=22 Score=25.69 Aligned_cols=53 Identities=6% Similarity=0.192 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchhhhHH--HHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Q 006912 450 RSISCWTLSRFSKFIVQDIGHQNGREQFE--KVLMGLLKRIL-DTNKRVQEAACSAFATLEEE 509 (626)
Q Consensus 450 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~ll~~l~~~l~-d~~~~v~~~a~~al~~l~~~ 509 (626)
.++|+|++|.++..-. ...+++ .+++.+++... ++...+|-.|..+|+-+...
T Consensus 4 lKaaLWaighIgss~~-------G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPL-------GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChH-------HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 4688999999986432 233333 57888888766 45789999999999988754
No 346
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=62.23 E-value=1.3e+02 Score=27.85 Aligned_cols=85 Identities=16% Similarity=0.328 Sum_probs=54.9
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHHhccc---h---------------------------HHHHhHHHHHHHHHHhc
Q 006912 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP---S---------------------------ALFVSMDQYLQGLFLLS 230 (626)
Q Consensus 181 il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~---~---------------------------~~~~~~~~~l~~l~~~~ 230 (626)
+=..+++.+.+.++.+|..+++.+-.++.... . .+...-..++..|+..+
T Consensus 44 lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l 123 (239)
T PF11935_consen 44 LKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVL 123 (239)
T ss_dssp HHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 33356666777888999999998887764321 0 01111225677788777
Q ss_pred CCCC--HHHHHHHHHHHHHHHhhCccchhhhHHHHHH
Q 006912 231 NDPS--AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFE 265 (626)
Q Consensus 231 ~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~ 265 (626)
.++. ...-..++.+|..++...|.+....++.+..
T Consensus 124 ~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~ 160 (239)
T PF11935_consen 124 QSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLS 160 (239)
T ss_dssp C-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 6544 5677788889999999999876544444433
No 347
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=61.73 E-value=39 Score=30.27 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc
Q 006912 492 NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (626)
Q Consensus 492 ~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~ 554 (626)
....-......++.+++.++..-.|++..++..+-.+-...+-..+..+=.+++..++++|++
T Consensus 13 y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe 75 (198)
T PF08161_consen 13 YQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPE 75 (198)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHH
Confidence 445566777888888888887777888888888777666655444556667777777777754
No 348
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=61.69 E-value=43 Score=31.11 Aligned_cols=101 Identities=9% Similarity=0.048 Sum_probs=60.3
Q ss_pred hhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccc---------hHH
Q 006912 145 INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP---------SAL 215 (626)
Q Consensus 145 ~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~---------~~~ 215 (626)
...|-+++.+++.+++.-..+..+. -.-.+++|..+..++.++.--|..|.-.+..++.... +.+
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~f------Ll~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf 183 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISF------LLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERF 183 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHH------HHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHH
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHH------HHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHH
Confidence 4578888999999988654433221 1126789999999988887777778777777764421 111
Q ss_pred HHhHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHhhC
Q 006912 216 FVSMDQYLQGLFL-LSNDPSAEVRKLVCAAFNLLIEVR 252 (626)
Q Consensus 216 ~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~l~~l~~~~ 252 (626)
..+...+..+.. +..++++..-+-+++|-..+.++.
T Consensus 184 -~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 184 -FAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp -HHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred -HHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 122233333332 445667777777777777776654
No 349
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=61.55 E-value=96 Score=26.40 Aligned_cols=93 Identities=15% Similarity=0.052 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCC-----cHHHHHHHHHHHHHHHhhcCcCchHHH-----HHHH
Q 006912 67 IRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA-----DRHIRSTVGTIVSVVVQLGGIAGWLEL-----LQAL 136 (626)
Q Consensus 67 ~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~-----~~~vr~~~~~~l~~i~~~~~~~~~~~l-----l~~l 136 (626)
.++.........+-..|+....+..+.+.+..++-+-+. ...+-...-.++..+.+.-......++ =|.|
T Consensus 45 ~~~~~le~y~ei~~~aWk~a~~~~~~~~e~~~iq~~~~~a~~~~~~~~~~~~R~~L~~f~~~k~~~~v~~mL~rl~~PiL 124 (152)
T PF12422_consen 45 VSKSVLELYGEILFRAWKKASKDKLEEIEEVCIQDLMEAAIHLEYLPLHSKFREVLLSFHSQKKRKGVDEMLLRLYEPIL 124 (152)
T ss_pred ccHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHhHHhcchHhHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 333333333444456788876777777777766655432 222223333455555543222223333 3778
Q ss_pred HHHhccCChhHHhHHHHHHHHHh
Q 006912 137 VTCLDSNDINHMEGAMDALSKIC 159 (626)
Q Consensus 137 ~~~l~~~~~~~r~~~l~~l~~l~ 159 (626)
...++..++.+|..|..++...+
T Consensus 125 ~r~L~~~n~~Vr~na~~l~~~aF 147 (152)
T PF12422_consen 125 WRALQAANAKVRSNAAALFLDAF 147 (152)
T ss_pred HHHHcCCCcchhccHHHHHHHHc
Confidence 88999999999999888876543
No 350
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=61.55 E-value=1.3e+02 Score=27.31 Aligned_cols=160 Identities=11% Similarity=0.015 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhcC-CChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHH
Q 006912 32 DKSQIWQQLQQYSQF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIR 110 (626)
Q Consensus 32 ~r~~a~~~L~~~~~~-p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr 110 (626)
.|+-|...+...... .+....+.+-|-. +..-+.|..|..++... ....+++....+...+.. -....+-
T Consensus 28 ~R~lak~~~~~~~~~~~~~~~~l~~~Lw~--~~~~E~r~~al~~l~~~----~~~~~~~~~~~~~~~l~~---~~~Wd~v 98 (208)
T cd07064 28 RRALSKPFLKESKLPDKEELWELVLELWQ--QPEREYQYVAIDLLRKY----KKFLTPEDLPLLEELITT---KSWWDTV 98 (208)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHc--chHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHHcC---CchHHHH
Confidence 777777777766542 3444555554443 44568888888777653 234566554444432222 2344443
Q ss_pred HH-HHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhc
Q 006912 111 ST-VGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (626)
Q Consensus 111 ~~-~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 189 (626)
-. +..+++.+... -+.+.+.+.+...|++.-.|..|+.+.....+. .....+...+...+
T Consensus 99 D~~~~~i~g~~~~~-----~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~--------------~~~~~l~~~~~~~~ 159 (208)
T cd07064 99 DSLAKVVGGILLAD-----YPEFEPVMDEWSTDENFWLRRTAILHQLKYKEK--------------TDTDLLFEIILANL 159 (208)
T ss_pred HHHHHHHhHHHHhC-----ChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc--------------cCHHHHHHHHHHhC
Confidence 33 33344554432 245567888888998888888887654443332 11345555666777
Q ss_pred CCCChHHHHHHHHHHHHHHhccchHHHHhH
Q 006912 190 QSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (626)
Q Consensus 190 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 219 (626)
.|+..-|+++.-.+|..+....|+.....+
T Consensus 160 ~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 160 GSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred CChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 888888999999999999888776655544
No 351
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=61.37 E-value=2.3e+02 Score=30.25 Aligned_cols=214 Identities=11% Similarity=0.125 Sum_probs=115.1
Q ss_pred cCChhHHHHHHHhHhhhhhCCc--------HHHH----HHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHH
Q 006912 85 SMSPSNQQYIKSELLPCLGAAD--------RHIR----STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAM 152 (626)
Q Consensus 85 ~l~~~~~~~i~~~L~~~l~~~~--------~~vr----~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l 152 (626)
.++++....|.+..+.-|...+ ..+| ...|+++|.+.+..+...-..++..|.+...+.+ ..+....
T Consensus 27 ~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~sVsdRF~~eL~~~~~~~~-~~~~~~~ 105 (552)
T PF14222_consen 27 SLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFVSVSDRFIAELEKLRKDSN-DAESKIE 105 (552)
T ss_pred CCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHhcccCC-chHHHHH
Confidence 4677777777777777775322 2233 4557777777766555555667777777665322 2221111
Q ss_pred HHH---HHHh-hhchhccccCCCCCccchhhhhHHHHHHhcCCC--ChHHHHHHHHHHHHHHhccc---------hHHHH
Q 006912 153 DAL---SKIC-EDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMP---------SALFV 217 (626)
Q Consensus 153 ~~l---~~l~-~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~---------~~~~~ 217 (626)
.++ ..+- +..+.+. -....+++..+.+++.+. +.+++.+-++.|..++.-+. +...+
T Consensus 106 ~li~GMr~lrlk~~p~e~--------~e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~ 177 (552)
T PF14222_consen 106 LLIMGMRYLRLKMYPEEA--------FEESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKE 177 (552)
T ss_pred HHHhhcceeeecCCCHHH--------HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHH
Confidence 111 1110 1111110 022456777777777665 55699999998888764321 12233
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhhCccchhhhHH-HHHHHHHhhccCCChHHHHHHHhHHHH-----h-
Q 006912 218 SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL-IEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHS-----Y- 289 (626)
Q Consensus 218 ~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l~~-----l- 289 (626)
.+..+.+.+.+.... +..-..++-....+ +-..++.|..+.. .+++.+...+++. ..|..+++++.. +
T Consensus 178 ~v~~i~~~~~~~~~K--~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL~ 253 (552)
T PF14222_consen 178 AVETIYPRAAKMMSK--PKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYLV 253 (552)
T ss_pred HHHHHHHHHHHHHhC--cchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHHh
Confidence 344445555555543 22223345444443 3445577777777 6888877777776 456666666444 3
Q ss_pred hccCCcchhHHhhhhhhHHHHh
Q 006912 290 FEAQLPHENLKEFLPRLVPVLL 311 (626)
Q Consensus 290 ~~~~~~~~~~~~~l~~li~~l~ 311 (626)
-+.....+.....++.++..++
T Consensus 254 ~r~~Es~n~T~krL~~i~~~lf 275 (552)
T PF14222_consen 254 YRCPESLNNTTKRLDSIFKLLF 275 (552)
T ss_pred cccCCCchHHHHHHHHHHHHHc
Confidence 2222233334445556666554
No 352
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=61.02 E-value=14 Score=20.94 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHc
Q 006912 406 WKDREAAVLALGAIAE 421 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~ 421 (626)
|.+|..+..+||.+..
T Consensus 1 ~~vR~~aa~aLg~~~~ 16 (30)
T smart00567 1 PLVRHEAAFALGQLGD 16 (30)
T ss_pred CHHHHHHHHHHHHcCC
Confidence 6789999999998843
No 353
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=60.56 E-value=2.3e+02 Score=30.09 Aligned_cols=86 Identities=10% Similarity=0.143 Sum_probs=56.6
Q ss_pred HHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc-cchh-hhHHHHHHHHhhhcCCCchHHHHHHH
Q 006912 377 VLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLY-PHLSEIVAFLIPLLDDKFPLIRSISC 454 (626)
Q Consensus 377 ~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~-~~l~~l~~~l~~~l~d~~~~vr~~a~ 454 (626)
.+...+....+..++..+...+.+..+ -.+|-+.+.-++.+++... +... +..+.+....-..+.|.++.++..|+
T Consensus 467 ~~~~~l~~~~i~qv~~~l~~l~~~~pp--~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~AL 544 (559)
T PF14868_consen 467 FFIQLLDPQLIEQVLTELTSLFKSEPP--DHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHAL 544 (559)
T ss_pred HHHHhcChHHHHHHHHHHHHHHhhCCC--ccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHH
Confidence 333334445556666667777754321 4488888888888887552 2222 34444444445567899999999999
Q ss_pred HHHHHHHHHH
Q 006912 455 WTLSRFSKFI 464 (626)
Q Consensus 455 ~~l~~l~~~~ 464 (626)
.+.|++++..
T Consensus 545 eAF~~FAe~T 554 (559)
T PF14868_consen 545 EAFGQFAERT 554 (559)
T ss_pred HHHHHHhccC
Confidence 9999999864
No 354
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.55 E-value=2.9e+02 Score=31.12 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=49.0
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCc
Q 006912 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (626)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 253 (626)
...++.+.....+++..||.+-.+...-+.......+.+..-.++..+..+.+|++++++....+.+..+.+...
T Consensus 277 ~~~~~~~~~~~~~~~~~v~~aL~d~~~~Ll~~C~~sL~~c~~~llesll~L~ndEn~ki~~~~~~~l~~~~eq~~ 351 (1014)
T KOG4524|consen 277 NIALKAIIPLRKHNNESVREALADFVSILLTRCENSLNNCEKHLLESLVHLENDENPKLPSHCVKLLEVLNEQLH 351 (1014)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Confidence 334444444445667777777666555555444444444444667888888889999999888888877766533
No 355
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=60.48 E-value=1.3e+02 Score=27.02 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 235 AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 235 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
...-..++.++..+.++.+....+.+..++..+-+...+.+...+..+=+++++..+.
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~a 71 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRA 71 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHH
Confidence 3445566777777777766666677777777777666666655666666666666554
No 356
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=59.47 E-value=3.2e+02 Score=31.30 Aligned_cols=95 Identities=8% Similarity=0.070 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhccchHH--HH---hHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHH
Q 006912 196 LRKLSLGSVNQFIMLMPSAL--FV---SMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYML 268 (626)
Q Consensus 196 vr~~al~~l~~~~~~~~~~~--~~---~~~~~l~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~ 268 (626)
-...++.+|.+++...|+-- +. .+-..++.++..+ ...++.+.+.+++.+..+....+. +..... ..+..++
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~C-v~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKEC-VTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHH-HHHHHhhhHHHHHH
Confidence 34567888888887776321 10 1112233444433 234567778888877765544322 111111 1222222
Q ss_pred hhccCCChHHHHHHHhHHHHhhcc
Q 006912 269 QVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 269 ~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
.. -+.-++.|..+++.+..+++.
T Consensus 1820 ~l-LHS~PS~R~~vL~vLYAL~S~ 1842 (2235)
T KOG1789|consen 1820 TL-LHSQPSMRARVLDVLYALSSN 1842 (2235)
T ss_pred HH-HhcChHHHHHHHHHHHHHhcC
Confidence 22 344566899999999999875
No 357
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=57.58 E-value=43 Score=28.58 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=58.0
Q ss_pred CChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc
Q 006912 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126 (626)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~ 126 (626)
+.|+......+.. +..++++-+.|...|.+.+.+.-.....-.++--.+.|+..|...++.++..+...+-.+..+-+.
T Consensus 57 ~~FI~Kia~~Vn~-~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 57 DSFIKKIASYVNS-SAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHHHHHHcc-ccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 3466656665543 244889999999999888754211101111122235778888888889988887777777766666
Q ss_pred CchHHHHHHHHH
Q 006912 127 AGWLELLQALVT 138 (626)
Q Consensus 127 ~~~~~ll~~l~~ 138 (626)
..+.++...+.+
T Consensus 136 ~~r~~i~~~l~~ 147 (160)
T PF11841_consen 136 SKRKEIAETLSQ 147 (160)
T ss_pred HHHHHHHHHHHH
Confidence 777766655543
No 358
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.16 E-value=3.9e+02 Score=31.60 Aligned_cols=250 Identities=12% Similarity=0.085 Sum_probs=127.5
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHhhccCChhH
Q 006912 20 LLEQQISPSSTADKSQIWQQLQQYSQFPD-----FNNYLAFILARA----EGKSVEIRQAAGLLLKNNLRTAYKSMSPSN 90 (626)
Q Consensus 20 ~l~~~~s~d~~~~r~~a~~~L~~~~~~p~-----~~~~l~~il~~~----~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~ 90 (626)
.+....++.-+ +|....+.|..+-+.++ -|++.++++.+. .+....+-+.+-..||-.-.+...+++.+.
T Consensus 847 ~v~~~s~~~~e-vr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sc 925 (1610)
T KOG1848|consen 847 EVSDNSSRGVE-VRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSC 925 (1610)
T ss_pred HHHHhcCccce-eeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHH
Confidence 34444566666 77777788777654332 277777777542 122344555666666544444455677777
Q ss_pred HHHHHHhHhhhhh-CCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccC
Q 006912 91 QQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD 169 (626)
Q Consensus 91 ~~~i~~~L~~~l~-~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~ 169 (626)
...+...+...-. ..+..+--.+...+=.+. +++.. +....++..-.+.+.+.+.. ..+....
T Consensus 926 i~~lidtl~~fs~QktdlNISltAi~lfWtvs---------Dfl~~--km~S~sed~~~~~~~e~~~s---s~~~~~~-- 989 (1610)
T KOG1848|consen 926 ILDLIDTLLVFSRQKTDLNISLTAIGLFWTVS---------DFLKN--KMFSTSEDSCAYNSVEDLYS---SMKSKEI-- 989 (1610)
T ss_pred HHHHHHHHHHHHhhhccccccHHHHHHHHHHH---------HHHHh--hhhccchhhhhhcchhhhcc---cccchhh--
Confidence 7777777666554 345555444333322222 11111 11222222222333333332 1111100
Q ss_pred CCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhH--HHHHHHHHHhcC-------C--CCHHH-
Q 006912 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSN-------D--PSAEV- 237 (626)
Q Consensus 170 ~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~-------~--~~~~~- 237 (626)
+.+...=.++..+.+...|...+||..|++.|..++..-...+.+.+ .-+...++.++. + ..+++
T Consensus 990 ---l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiq 1066 (1610)
T KOG1848|consen 990 ---LPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQ 1066 (1610)
T ss_pred ---hhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHh
Confidence 00122233444555566677889999999999998865433222210 111222333222 0 01112
Q ss_pred ---HHHHHHHHHHHHhhCccch---------hhhHHHHHHHHHhhccCCChHHHHHHHhHHHHh
Q 006912 238 ---RKLVCAAFNLLIEVRPSFL---------EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (626)
Q Consensus 238 ---~~~~~~~l~~l~~~~~~~~---------~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l 289 (626)
-...+-++..+++.+++.+ ....+.++.++.....+...++...++..+.++
T Consensus 1067 kqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1067 KQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHH
Confidence 1224444555554444332 245567788888888888888888888776664
No 359
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=56.65 E-value=86 Score=26.26 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=25.6
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 006912 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (626)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (626)
+.+...+...+.+++++++..|++|+..+-
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 566667888999999999999999998763
No 360
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.57 E-value=1.9e+02 Score=27.77 Aligned_cols=103 Identities=18% Similarity=0.135 Sum_probs=61.9
Q ss_pred HhHhhhhhCCcHHHHHHHHHHHHHHHhhc---CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCC
Q 006912 96 SELLPCLGAADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (626)
Q Consensus 96 ~~L~~~l~~~~~~vr~~~~~~l~~i~~~~---~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~ 172 (626)
..+...+.+.++.||+.+...+..+.... +...-...++.+.+++.+.++ -+-|..++..+.....-.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~------- 76 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELR------- 76 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHH-------
Confidence 35666778889999999887666655441 122235678889998887765 344566666665543211
Q ss_pred CccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 006912 173 LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (626)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (626)
...+..++..++..+.++........+..+.++.+
T Consensus 77 --~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 77 --KKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred --HHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 11233355555556666655556666666666554
No 361
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=56.45 E-value=2.8e+02 Score=29.74 Aligned_cols=51 Identities=12% Similarity=-0.001 Sum_probs=25.8
Q ss_pred HHHHHhHhhhh-hCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccC
Q 006912 92 QYIKSELLPCL-GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN 143 (626)
Q Consensus 92 ~~i~~~L~~~l-~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~ 143 (626)
+.+...++..- ..-++.++......++.++... +..++..+..+.+.+..+
T Consensus 72 ~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~-~~yl~~vl~~LV~~f~p~ 123 (563)
T PF05327_consen 72 KQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQ-PKYLSPVLSMLVKNFIPP 123 (563)
T ss_dssp HHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH--GGGHHHHHHHHHHGGGS-
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhccCC
Confidence 33444444432 1334455565666666665443 455677777777766543
No 362
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=55.31 E-value=4e+02 Score=31.20 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=47.6
Q ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 006912 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (626)
Q Consensus 433 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (626)
+++..++..+-..++.|....+.++........ ........++...+-.+.+++..||..|...|..+-..
T Consensus 503 dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~------~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R 573 (1120)
T PF14228_consen 503 DLLDWVIDRCYSSSPRVAEGYFTVLAEVFSERE------YPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEER 573 (1120)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCC------CCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 467777776666777776665555544432111 12234567888877778888999999999988877644
No 363
>PF14961 BROMI: Broad-minded protein
Probab=54.39 E-value=2e+02 Score=33.26 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=79.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHH----HHHH
Q 006912 61 EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLEL----LQAL 136 (626)
Q Consensus 61 ~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l----l~~l 136 (626)
++++.++|.-|...|.+.-.. +-++.+....+++.|..+|.|+++.+...+.+..+..+...+.+.-.++ ...+
T Consensus 172 ~~~P~evR~eAlq~Lc~~p~S--DVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~trEiYtsL~~~l 249 (1296)
T PF14961_consen 172 PGQPKEVRLEALQILCSAPPS--DVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNMTREIYTSLANHL 249 (1296)
T ss_pred CCCchHHHHHHHHHHhcCChh--hccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHH
Confidence 477889999999988654222 2367788899999999999999999999999998888877654443444 4444
Q ss_pred HHHhccCC---h------hH-------HhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCC
Q 006912 137 VTCLDSND---I------NH-------MEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (626)
Q Consensus 137 ~~~l~~~~---~------~~-------r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~ 191 (626)
...+-+.+ | ++ ....+..+..+-++.+..-. ..-++.+++++...+.+|..
T Consensus 250 ~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~Wi----RhpeK~mEeIVEsTLsLLs~ 316 (1296)
T PF14961_consen 250 ESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWI----RHPEKYMEEIVESTLSLLST 316 (1296)
T ss_pred HHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhh----cCcHHHHHHHHHHHHHHhcc
Confidence 33332221 1 11 11233444444444443211 11146677888887777765
No 364
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.78 E-value=2.6e+02 Score=28.59 Aligned_cols=129 Identities=22% Similarity=0.300 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhc-Cc----chH--HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHH--HHHHHHhh
Q 006912 370 CSAAALDVLSNVF-GD----EIL--PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIP 440 (626)
Q Consensus 370 ~a~~~l~~l~~~~-~~----~~~--~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~l~~~l~~ 440 (626)
....|++.++... ++ .++ ..++|.+...+.-...+ -...--.+.++|.++.... ....+. .+++.+++
T Consensus 521 F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~e-ddLvL~~vi~~GT~a~d~~--cA~Lla~a~~i~tlie 597 (791)
T KOG1222|consen 521 FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADE-DDLVLQIVIACGTMARDLD--CARLLAPAKLIDTLIE 597 (791)
T ss_pred HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccc-hhhhhHHHHHhhhhhhhhH--HHHHhCccccHHHHHH
Confidence 3667888777643 22 222 24677777777543211 1122222334444433211 111111 13444444
Q ss_pred hc---CCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhH---HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 006912 441 LL---DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF---EKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (626)
Q Consensus 441 ~l---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~---~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (626)
.+ +..+..|.+.. .+.-++..+-.. ..++ ...-..++..|+|.+..+|..+=.+|.-+++.
T Consensus 598 LL~a~QeDDEfV~Qii-yVF~Q~l~He~t-------r~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 598 LLQACQEDDEFVVQII-YVFLQFLKHELT-------RRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHhhcccchHHHHHH-HHHHHHHHHHHH-------HHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 44 33445554443 444444443211 1111 12223567888999999999998898888754
No 365
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=53.77 E-value=76 Score=28.61 Aligned_cols=83 Identities=27% Similarity=0.348 Sum_probs=52.8
Q ss_pred HHHHHhhcCc-chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHH
Q 006912 375 LDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSIS 453 (626)
Q Consensus 375 l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a 453 (626)
++.++..+.. ...+.+++......++.. -|..|.+...++...-+ .++...+++.+-..+.|.+..|+.+.
T Consensus 103 vD~la~~~V~~~~~~~li~~~~a~~~~~~--~w~rraaiv~~l~~~k~------~~~~~~if~i~E~~l~d~e~fV~KAi 174 (222)
T COG4912 103 VDTLANHFVGIPLWPDLIEEWAADAEEDN--RWERRAAIVHQLVYKKK------TLDLLEIFEIIELLLGDKEFFVQKAI 174 (222)
T ss_pred HHHHHHHhhccccCHHHHHHHHhccccch--HHHHHHHHHHHHHHhcC------ccchhHHHHHHHHHccChHHHHHHHH
Confidence 3444444433 455566666644343332 15556555555544433 23444688888889999999999999
Q ss_pred HHHHHHHHHHHh
Q 006912 454 CWTLSRFSKFIV 465 (626)
Q Consensus 454 ~~~l~~l~~~~~ 465 (626)
-|+|.+++.+.+
T Consensus 175 gWaLrq~~k~~~ 186 (222)
T COG4912 175 GWALRQIGKHSN 186 (222)
T ss_pred HHHHHHHHhhch
Confidence 999999998543
No 366
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=53.46 E-value=2.3e+02 Score=27.86 Aligned_cols=172 Identities=13% Similarity=0.110 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHH-------H
Q 006912 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELL-------Q 134 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll-------~ 134 (626)
..+...+..+..+.+..+.++ .+.+...|+.....+...+.+++..++...+...-.+++ +
T Consensus 37 s~~~~~~~~g~~l~~~iL~~~------------~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~ 104 (330)
T PF11707_consen 37 SSDLSFQSYGLELIRSILQNH------------LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLK 104 (330)
T ss_pred ccchhHHHHHHHHHHHHHHHH------------HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchh
Confidence 344457777767766666553 234555666666666667777777777643322212221 2
Q ss_pred HHHHHhc----cCC---------hhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHH
Q 006912 135 ALVTCLD----SND---------INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSL 201 (626)
Q Consensus 135 ~l~~~l~----~~~---------~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al 201 (626)
.+.+++. ..+ +.+|...+..+..++...+..+..++ + ....++..++..+...++++-...+
T Consensus 105 ~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~l---L--~~~~~~~~l~k~l~~D~~~~v~~iL 179 (330)
T PF11707_consen 105 SLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDL---L--SQKKLMSALFKGLRKDPPETVILIL 179 (330)
T ss_pred hHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHH---H--HcCchHHHHHhcccCCCHHHHHHHH
Confidence 2222221 001 27888888888888887665443211 0 0144577888888887778888888
Q ss_pred HHHHHHHhc---cchHHHH-hH-HHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHh
Q 006912 202 GSVNQFIML---MPSALFV-SM-DQYLQGLFLLSNDPSA----EVRKLVCAAFNLLIE 250 (626)
Q Consensus 202 ~~l~~~~~~---~~~~~~~-~~-~~~l~~l~~~~~~~~~----~~~~~~~~~l~~l~~ 250 (626)
.++...+-. ++....- .+ +..+..+..+....++ .++..+.+.|..++.
T Consensus 180 ~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 180 ETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred HHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhc
Confidence 888765532 2222211 11 2345666665554444 677777777777664
No 367
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.17 E-value=4.1e+02 Score=30.59 Aligned_cols=85 Identities=15% Similarity=0.307 Sum_probs=59.7
Q ss_pred HHHHHHHHHH-----hcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccC
Q 006912 219 MDQYLQGLFL-----LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ 293 (626)
Q Consensus 219 ~~~~l~~l~~-----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~ 293 (626)
+.+++..++. ...|-.+++|..+++.|+..+..+|..|-. ...+.++-=.+.|...+||..++..+..+.+..
T Consensus 280 i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~ 357 (1048)
T KOG2011|consen 280 IESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKD 357 (1048)
T ss_pred HHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhcc
Confidence 3345555555 356888999999999999999999986543 234444444678999999999999999988763
Q ss_pred CcchhHHhhhhh
Q 006912 294 LPHENLKEFLPR 305 (626)
Q Consensus 294 ~~~~~~~~~l~~ 305 (626)
.....+.-++.+
T Consensus 358 ~~~~~L~lFtsR 369 (1048)
T KOG2011|consen 358 EDKDKLELFTSR 369 (1048)
T ss_pred ccchHHHHHHHH
Confidence 333334433333
No 368
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=52.91 E-value=3.6e+02 Score=29.94 Aligned_cols=56 Identities=7% Similarity=0.224 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 237 VRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 237 ~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
..+-+.+++..++..+.+-+..+...++..+...+.+..++.+..+.+.+..++..
T Consensus 72 ~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i 127 (819)
T KOG1877|consen 72 SVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANI 127 (819)
T ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhh
Confidence 33456666677766666555556677888777787777888888888888888755
No 369
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=52.63 E-value=1.4e+02 Score=24.97 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=66.0
Q ss_pred HHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc-cc-
Q 006912 436 AFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-EE- 513 (626)
Q Consensus 436 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~-~~- 513 (626)
..+++.|.-+...++.+|..++-. .+.-+.+++.++..+.+++-..|......+..+++.+. ..
T Consensus 11 ~~~L~~L~aS~qSi~kaa~fAlk~--------------~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~ 76 (139)
T PF12243_consen 11 TQLLRRLNASQQSIQKAAQFALKN--------------RDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKK 76 (139)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHc--------------cccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhccc
Confidence 345556666666777777665543 23346677888888888888889999999999998873 33
Q ss_pred -ccchHHHHHHHHHHHHhhh----hH--HHHHHHHHHHHHHHHH
Q 006912 514 -LAPRLEIILQHLMMAFGKY----QR--RNLRIVYDAIGTLADA 550 (626)
Q Consensus 514 -~~~~l~~i~~~l~~~l~~~----~~--~~~~~~~~~l~~i~~~ 550 (626)
-.+|...+-..|.+.+... ++ .++..+...|..+-..
T Consensus 77 ~~~~Yv~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~k 120 (139)
T PF12243_consen 77 YNYPYVSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSKK 120 (139)
T ss_pred ccchhHHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHc
Confidence 5677666655555555432 12 3455666666666544
No 370
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=52.46 E-value=1.4e+02 Score=27.28 Aligned_cols=92 Identities=9% Similarity=0.168 Sum_probs=66.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhccccCChhhh
Q 006912 484 LLKRILDTNKRVQEAACSAFATLEEEAAEE-LAPRLEIILQHLMMAFGKY-QRRNLRIVYDAIGTLADAVGFELNQPVYL 561 (626)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~~~~~-~~~~l~~i~~~l~~~l~~~-~~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 561 (626)
+.+.|.++++.+|..|...+..++...... -..-+..+-++|.-++-.. ...+++...+-|+.++......-..-.|+
T Consensus 5 ~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~~~~~~f~ 84 (217)
T PF05997_consen 5 FAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSEKAALLFL 84 (217)
T ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcChHHHHHHH
Confidence 556777889999999999999999876543 2344567777777766554 34567788888888888776541112588
Q ss_pred hhhhHHHHHHHhcC
Q 006912 562 DILMPPLIAKWQQL 575 (626)
Q Consensus 562 ~~l~~~l~~~~~~~ 575 (626)
..++..+...|..+
T Consensus 85 ~~f~~tm~rEW~~I 98 (217)
T PF05997_consen 85 KAFWETMRREWDGI 98 (217)
T ss_pred HHHHHHHHHHHccc
Confidence 88888888888765
No 371
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=51.86 E-value=57 Score=25.48 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHccCccchhhhHHH--HHHHHhhhc--CCCchHHHHHHHHHHHHHHHHHhh
Q 006912 409 REAAVLALGAIAEGCIKGLYPHLSE--IVAFLIPLL--DDKFPLIRSISCWTLSRFSKFIVQ 466 (626)
Q Consensus 409 r~aal~~l~~l~~~~~~~~~~~l~~--l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~ 466 (626)
|...+..++.++...+.. ...+.. -+|.++... .+.+|.+|+-|++++..+++..++
T Consensus 3 K~~lvrlianl~~~~~~~-Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEV-QDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHH-HHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 455667777777766421 122211 256666655 467899999999999999986553
No 372
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=51.11 E-value=29 Score=27.04 Aligned_cols=56 Identities=16% Similarity=0.017 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchhhhHH--HHHHHHHHH--hccCCHHHHHHHHHHHHHHHHHhc
Q 006912 450 RSISCWTLSRFSKFIVQDIGHQNGREQFE--KVLMGLLKR--ILDTNKRVQEAACSAFATLEEEAA 511 (626)
Q Consensus 450 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~ll~~l~~~--l~d~~~~v~~~a~~al~~l~~~~~ 511 (626)
|...+..||.++-..+. .++.+. .-+|.++.+ +++.+|-+|+.|..|+.++++...
T Consensus 3 K~~lvrlianl~~~~~~------~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKE------VQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCCHH------HHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 44556666666643221 122211 125555554 456689999999999999998754
No 373
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=50.68 E-value=1.3e+02 Score=23.98 Aligned_cols=43 Identities=5% Similarity=0.014 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccch
Q 006912 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR 517 (626)
Q Consensus 475 ~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~ 517 (626)
.+...++..+.+.+....+.-+..++..+..++.+++.....+
T Consensus 33 ~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~ 75 (114)
T cd03562 33 KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEF 75 (114)
T ss_pred HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHH
Confidence 4456677777777776677778899999999999987654333
No 374
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=50.35 E-value=1.5e+02 Score=24.66 Aligned_cols=58 Identities=12% Similarity=0.281 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 235 AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 235 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
.......+..+....+..|+.+..+-..+++.+..++.+.++.++..|-+......+.
T Consensus 67 ~~~~~~~l~~~i~~F~r~pelm~~~N~~FIQ~i~~~~~~~~~~~k~~A~~LY~~YL~~ 124 (135)
T PF13981_consen 67 DKLNQAILNFFIDRFSRQPELMISNNGAFIQLIAQAMTHGDDEIKQKARDLYKKYLQL 124 (135)
T ss_dssp HHHHHHCHHHHHHHHHHTTTHHHHTHHHHHHHHHHHCC-TSCCCHHHHHHHHHHHCCS
T ss_pred cccCHHHHHHHHHHHHhCHhHHHHcccHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 3455566777776777888877777777888888888877777888888877776665
No 375
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=50.34 E-value=1.2e+02 Score=31.46 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHccCccchhhhH--HHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhH-HHHHHHH
Q 006912 408 DREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGL 484 (626)
Q Consensus 408 ~r~aal~~l~~l~~~~~~~~~~~l--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~ll~~l 484 (626)
.-.|++.++-+++.... .++.-+ ..+...++..+.+|+.+|...+...+..+.--+.+. ...++ ..++..+
T Consensus 405 ~~~a~~l~LkS~SrSV~-~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL-----~~~fL~~~iIdvl 478 (743)
T COG5369 405 DFVAIVLFLKSMSRSVT-FLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNL-----GAGFLEKSIIDVL 478 (743)
T ss_pred HHHHHHHHHHHhhHHHH-HHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccch-----HHHHHHhhHHHHH
Confidence 44566666666655431 111111 125677788888887777766655444433222221 12222 3455555
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 006912 485 LKRILDTNKRVQEAACSAFATLEEEAA--EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (626)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~--~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~ 549 (626)
.+.+.+.+...|....+.+..+.-.|. +.+.+....=++.++...++++..++..++..+-++.-
T Consensus 479 ~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 479 VNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred HHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 666666677888889999999988885 45677777778888999999999999988888887743
No 376
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.22 E-value=2.4e+02 Score=29.24 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=73.3
Q ss_pred HhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhh
Q 006912 396 AKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGRE 475 (626)
Q Consensus 396 ~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 475 (626)
..+..+| |..-...|..+..--.+ -.+++..|.+.+++.++.|...|+.+|..+.+.|+... +...
T Consensus 12 ~~l~~pD---Wa~NleIcD~IN~~~~~--------~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~f---h~~V 77 (470)
T KOG1087|consen 12 ESLAEPD---WALNLEICDLINSTEGG--------PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSF---HLQV 77 (470)
T ss_pred ccccCcc---HHHHHHHHHHHhcCccC--------cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHH---HHHH
Confidence 3445566 87665555544332222 22678889999999999999999999999999887641 2233
Q ss_pred hHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHhcc
Q 006912 476 QFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAAE 512 (626)
Q Consensus 476 ~~~~ll~~l~~~l~d~--~~~v~~~a~~al~~l~~~~~~ 512 (626)
.-..+++..++..... +..||..++..|...-+.++.
T Consensus 78 a~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 78 ASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 3466777777777654 578999999999999988743
No 377
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=49.75 E-value=3.6e+02 Score=28.93 Aligned_cols=184 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 006912 425 KGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAF 503 (626)
Q Consensus 425 ~~~~~~l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al 503 (626)
..+.+.+..-+...+..++. .+..+-...+..+.+++.++..+ ...+..++..++..+......+|..|.-++
T Consensus 233 ~k~~~~vKsYl~s~l~Ll~~~t~te~~~~~L~~l~~l~~~~~~f------~k~lk~liK~~V~vWstge~~~rv~Afl~l 306 (661)
T KOG2256|consen 233 YKLRVLVKSYLGSSLHLLNQLTDTEVLAFTLRHLTVLVPFLATF------PKLLKKLIKAVVHVWSTGEESLRVLAFLCL 306 (661)
T ss_pred hhhhHHHHHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHheeeccCCcchhhHHHHHH
Q ss_pred HHHHHHh-cccccchHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcC
Q 006912 504 ATLEEEA-AEELAPRLEIILQHLMMAFGKYQ-------RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL 575 (626)
Q Consensus 504 ~~l~~~~-~~~~~~~l~~i~~~l~~~l~~~~-------~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 575 (626)
..++... ..-+.+.+.........--...+ +..+..+.+.++.=.+..=...+ -|..++.-.|-+.+..-
T Consensus 307 ~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF--~yIrQLAihLRnam~~k 384 (661)
T KOG2256|consen 307 IDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLDLQVSYQHAF--VYIRQLAIHLRNAMITK 384 (661)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccCHHHHHHHHH--HHHHHHHHHHHHHhhcC
Q ss_pred CCCCCcc------chHHHHHHHHHH-Hhcc--ccccchHHHHHHHHHHHH
Q 006912 576 PNSDKDL------FPLLECFTSIAQ-ALGA--GFTQFAQPVFQRCINIIQ 616 (626)
Q Consensus 576 ~~~~~~~------~~~l~~~~~l~~-~~g~--~f~~~~~~i~~~l~~~l~ 616 (626)
+.++... ..++..+..+.. +.|. ...|.+.+++..++.++.
T Consensus 385 ~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~Gvir 434 (661)
T KOG2256|consen 385 NKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIR 434 (661)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhh
No 378
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=47.95 E-value=4.3e+02 Score=29.39 Aligned_cols=243 Identities=13% Similarity=0.090 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHhhcCc---chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccc--h---hhhHHHHHHHHhh
Q 006912 369 KCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG--L---YPHLSEIVAFLIP 440 (626)
Q Consensus 369 ~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~--~---~~~l~~l~~~l~~ 440 (626)
..|..+++.+...+.+ .+...++..+.+++.+.. ...+..++.++-.++....+. . .+++..-+..+..
T Consensus 74 ~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~---~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~h 150 (819)
T KOG1877|consen 74 KIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNN---DEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCH 150 (819)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC---CceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhh
Confidence 4478888888888765 456677888888888876 888888888888887654321 1 1222222333333
Q ss_pred hcCCC--chHHHHHHHHHHHHHHHHHhh-hcC-CCchhhhHHHHHHHHHHHhccCC--------HHH-------------
Q 006912 441 LLDDK--FPLIRSISCWTLSRFSKFIVQ-DIG-HQNGREQFEKVLMGLLKRILDTN--------KRV------------- 495 (626)
Q Consensus 441 ~l~d~--~~~vr~~a~~~l~~l~~~~~~-~~~-~~~~~~~~~~ll~~l~~~l~d~~--------~~v------------- 495 (626)
...++ -..+|.+-+.+|..+.-.... .+. ......+.+.++|.+...++..+ ...
T Consensus 151 e~~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~~~~~~S~s~~~~~~~~~a~~~~~ 230 (819)
T KOG1877|consen 151 ERGDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIENLGKRESDSRIRTFSLLAAGDKTS 230 (819)
T ss_pred cccchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhhcccccCcccccCccccccCCccc
Confidence 33332 245666666666554432210 000 00112346666776665554221 000
Q ss_pred --HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhh-HHHH-HHHHHHHHHHHHHhccccCChhhhhhhhHHHHHH
Q 006912 496 --QEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ-RRNL-RIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (626)
Q Consensus 496 --~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~-~~~~-~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~ 571 (626)
..-|-.++.++.+.. .+...+..+++.++.-++... +..- ..++.++..++-....+... .+.+.++..|.+.
T Consensus 231 ~p~vla~~cl~~l~~~A--~~g~~iR~~l~pl~~~~d~h~~w~p~n~fav~~~~~vi~~iq~q~s~-~v~~~li~hLd~~ 307 (819)
T KOG1877|consen 231 DPKVLAERCLRELLGRA--KFGTNIRNALKPLLSHLDFHELWTPPNGFAVHVFKIVIYLIQRQYSY-FVIQELINHLDNK 307 (819)
T ss_pred CcchhHHHHHHHhhccc--cccchHHHHHHHHHhccccceeecCCCccchHHHHHHHHHHhhccch-HHHHHHHHHHHhh
Confidence 111233333333322 222244555555554444322 2221 23444444444433333211 3556777766655
Q ss_pred HhcCCCCCCccc-hHH-HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhh
Q 006912 572 WQQLPNSDKDLF-PLL-ECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAK 622 (626)
Q Consensus 572 ~~~~~~~~~~~~-~~l-~~~~~l~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~ 622 (626)
.... ...++. ..+ -++..++. ....|++-.++..++..|+...-+.
T Consensus 308 ~~~~--~~~r~~~~iv~~~~~~i~~---~~v~ps~l~i~n~l~rhLR~si~~s 355 (819)
T KOG1877|consen 308 KLVA--KKPRLGLSIVLVSIALIAA---TSVGPSVLIIFNDLLRHLRKSISFS 355 (819)
T ss_pred cccc--cCccccchhHHHHHHHHHh---cccchHHHHHHHHHHHHHHhhcccc
Confidence 4322 233332 333 23323322 2778888888999999888775443
No 379
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=47.89 E-value=42 Score=21.69 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=23.5
Q ss_pred HHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhc
Q 006912 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (626)
Q Consensus 90 ~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~ 124 (626)
..+++|+.+++.|...++..|..+..+++.+.+..
T Consensus 4 ~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 4 NLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 45778888888887777777887778888777654
No 380
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=47.42 E-value=1.1e+02 Score=24.60 Aligned_cols=80 Identities=24% Similarity=0.306 Sum_probs=44.2
Q ss_pred HHHHHHhcCCC--ChHHHHHHHHHHHHHHhccch---HHHHhHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhCccc
Q 006912 182 LPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPS---ALFVSMDQYLQGLFLLSNDPS-AEVRKLVCAAFNLLIEVRPSF 255 (626)
Q Consensus 182 l~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~ 255 (626)
+..++..|... +.+-...|+++...++..-+. ++..+..+++..++.+-+.-+ ++.-..-.+++..++-..|..
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~~ 84 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPEK 84 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhHH
Confidence 44566666633 577778999999999987666 777777777888877644221 222233445566666666766
Q ss_pred hhhhHH
Q 006912 256 LEPHLR 261 (626)
Q Consensus 256 ~~~~l~ 261 (626)
..+|+-
T Consensus 85 ~~~~L~ 90 (114)
T PF10193_consen 85 VAPYLT 90 (114)
T ss_dssp HHH-HH
T ss_pred HHHHHH
Confidence 655443
No 381
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=46.72 E-value=3.9e+02 Score=28.54 Aligned_cols=79 Identities=11% Similarity=0.240 Sum_probs=58.3
Q ss_pred chhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHH--------HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006912 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF--------VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (626)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~--------~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 247 (626)
..+..++..+++++...+..|+..||..+..+++.+|-++. +.+..+++.+.....|-.+.-.....++.+.
T Consensus 566 ~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~ 645 (1053)
T COG5101 566 SFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGM 645 (1053)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhH
Confidence 44667777888888889999999999999999998875543 2344556666666677677766777777777
Q ss_pred HHhhCcc
Q 006912 248 LIEVRPS 254 (626)
Q Consensus 248 l~~~~~~ 254 (626)
++...|.
T Consensus 646 vIse~p~ 652 (1053)
T COG5101 646 VISEVPK 652 (1053)
T ss_pred HHhccch
Confidence 7765553
No 382
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.06 E-value=6.6e+02 Score=30.37 Aligned_cols=140 Identities=13% Similarity=-0.020 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhh-hcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP-LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l 484 (626)
.....+++.+.+.+.-+... ....+.++..+.. ...+..+.||.+++..+..+.-.-. + ...+...+.+-..+
T Consensus 1501 d~a~~~a~~~~~lm~~~~~~--~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~-F---v~~~~~r~dI~~l~ 1574 (1710)
T KOG1851|consen 1501 DLAKNSALLCHSLMSLSWIG--HHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNI-F---VSQELRRDDIRKLL 1574 (1710)
T ss_pred hHHHHHHHHHHHHHHhhccc--hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-h---cccchhHHHHHHHH
Confidence 34455555555555444321 1122334444443 3345678999998877765542211 1 02455667777778
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hhhHHHHH-HHHHHHHHHHHHhccc
Q 006912 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFG-KYQRRNLR-IVYDAIGTLADAVGFE 554 (626)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~-~~~~~~~~-~~~~~l~~i~~~~~~~ 554 (626)
...+.|....||..|+.+|+-+.....-.+.+ ........-.. ...+..+. .+..++++++-+++-.
T Consensus 1575 ~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~ 1643 (1710)
T KOG1851|consen 1575 ESLLNDDQIEVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYV 1643 (1710)
T ss_pred HHHHcchHHHHHHHHHHHHHHHHhccccccch---HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhcccc
Confidence 88888887889999999999998754333333 11111111111 22233443 7899999999888643
No 383
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=43.16 E-value=2e+02 Score=24.16 Aligned_cols=81 Identities=19% Similarity=0.237 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCC
Q 006912 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQ 557 (626)
Q Consensus 478 ~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 557 (626)
+.+...+...+.++++.||..|..||-.+-. +.+.||-+ .|.+++++ ...+ +.|..+...-+....+
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l~pY~d----~L~~Lldd---~~fr---deL~~f~~~~~~~~I~ 82 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD---PYLTPYKD----NLENLLDD---KTFR---DELTTFNLSDESSVIE 82 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHhHHH----HHHHHcCc---chHH---HHHHhhcccCCcCCCC
Confidence 4455556677888999999999999988633 34455543 34444443 2222 2233332222211122
Q ss_pred hhhhhhhhHHHHHH
Q 006912 558 PVYLDILMPPLIAK 571 (626)
Q Consensus 558 ~~~~~~l~~~l~~~ 571 (626)
+..-+.+||.++..
T Consensus 83 ~ehR~~l~pvvlRI 96 (141)
T PF07539_consen 83 EEHRPELMPVVLRI 96 (141)
T ss_pred HHHHhHHHHHHHHH
Confidence 34556677766655
No 384
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=42.33 E-value=3e+02 Score=25.89 Aligned_cols=138 Identities=12% Similarity=0.145 Sum_probs=73.0
Q ss_pred hhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHhccc----hHHHHhHHHHHHHHHHhcCCC-CH---HHHHHH-H-HHHH
Q 006912 178 INIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMP----SALFVSMDQYLQGLFLLSNDP-SA---EVRKLV-C-AAFN 246 (626)
Q Consensus 178 ~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~-~~---~~~~~~-~-~~l~ 246 (626)
+..+-..++..|.. .+...-..+..+|..++..+- +.+...-..|+..++..+... .. -.|..+ + -++.
T Consensus 94 i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~ 173 (255)
T PF10350_consen 94 IEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLIL 173 (255)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHH
Confidence 44444455544433 344444555555555554322 333333446777777766654 11 234332 1 1223
Q ss_pred HHHhhCccchhhhHHHHHHHHHhhccCC--------ChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcc
Q 006912 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDT--------DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMI 315 (626)
Q Consensus 247 ~l~~~~~~~~~~~l~~l~~~~~~~~~~~--------~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~ 315 (626)
.++...+..-.+.++..+..+++....+ .+..+..|+.++..+...........+|+...+...+..+.
T Consensus 174 aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~ 250 (255)
T PF10350_consen 174 AILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFS 250 (255)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC
Confidence 3333333221133344444444443221 13578999999999988766677788888887777666544
No 385
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=41.85 E-value=2.3e+02 Score=24.52 Aligned_cols=118 Identities=13% Similarity=0.124 Sum_probs=65.1
Q ss_pred CCCCHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhcc
Q 006912 7 WQPQEQGFNEICRLLEQQ-ISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (626)
Q Consensus 7 ~~~~~~~~~~l~~~l~~~-~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~ 85 (626)
-+|.++...+|..++..- ...=+++.|+---+.=..+.++|.+.+.++.-.. =.++....-+..++ ..|..
T Consensus 4 ~~P~~~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~p~aL~~~L~sv~---W~~~~e~~e~~~lL-----~~W~~ 75 (166)
T cd00870 4 LKPNSKERKELNKILKYPPTTKLTDEEKDLIWKFRFYLTNNKKALTKFLKSVN---WSDEQEVKQALELM-----PKWAK 75 (166)
T ss_pred CCcCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHHhhCcHHHHHHhhhCC---CCCHHHHHHHHHHH-----hcCCC
Confidence 467777777777666542 1111111333333322223457777665543221 23343333343444 46988
Q ss_pred CChhHHHHHHHhHhhhhhC--CcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccC
Q 006912 86 MSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN 143 (626)
Q Consensus 86 l~~~~~~~i~~~L~~~l~~--~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~ 143 (626)
++++..- ++|.. .+..||..|..++... +.+.+-.+++.|.|++.-.
T Consensus 76 i~~~~aL-------eLL~~~f~~~~VR~yAV~~L~~~----sd~eL~~yL~QLVQaLKyE 124 (166)
T cd00870 76 IDIEDAL-------ELLSPYFTNPVVRKYAVSRLKLA----SDEELLLYLLQLVQALKYE 124 (166)
T ss_pred CCHHHHH-------HHcCccCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHhc
Confidence 7774433 33332 4689999988887753 3456778888888888644
No 386
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=41.75 E-value=5.1e+02 Score=28.48 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHh-hccCC
Q 006912 219 MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY-FEAQL 294 (626)
Q Consensus 219 ~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l-~~~~~ 294 (626)
+..+++.|-.+..++=++++..++..+..+....|+-= ..++..++..+.|.+..+...|-..|..+ +.++.
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCc
Confidence 34556666666677778899999999988887777532 24666667778888877777776666665 55543
No 387
>PHA02836 putative transmembrane protein; Provisional
Probab=41.44 E-value=18 Score=28.98 Aligned_cols=42 Identities=19% Similarity=0.371 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHhhhc
Q 006912 583 FPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVS 624 (626)
Q Consensus 583 ~~~l~~~~~l~~~~g~-~f~~~~~~i~~~l~~~l~~~~~~~~~ 624 (626)
..++..+++++...|. +...|++.+||.+.+.|+++..+|.+
T Consensus 105 LtLiG~~gyise~wGk~k~~kYI~~im~l~fnfl~dnilf~~r 147 (153)
T PHA02836 105 LTLIGIIGYISECCGKYGLEKYIQDLLLLLFNFLDDNILFKLR 147 (153)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHcccceeeeeE
Confidence 4678889999999998 67789999999999999988777653
No 388
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=41.26 E-value=4.7e+02 Score=27.91 Aligned_cols=103 Identities=18% Similarity=0.159 Sum_probs=69.3
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHh-ccccc-chHHHH
Q 006912 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEA-AEELA-PRLEII 521 (626)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d-~~~~v~~~a~~al~~l~~~~-~~~~~-~~l~~i 521 (626)
..+.++......++-++-..+.. ....+.+++..+-..+.. +...++.+.+..++.+.+.. ++... +.++.+
T Consensus 450 ~~~~l~~~~~~lL~l~~~~~~~l-----~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~L 524 (559)
T PF14868_consen 450 SQPYLQQTLSLLLSLLSFFIQLL-----DPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPAL 524 (559)
T ss_pred cchHHHHHHHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHH
Confidence 34666666655555555444332 456678888888777754 34467888888888876544 33333 455666
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Q 006912 522 LQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (626)
Q Consensus 522 ~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~ 552 (626)
-.....++.+.++-....++++++.+++.+.
T Consensus 525 s~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 525 SELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 6666667777788888999999999988764
No 389
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=40.89 E-value=4.1e+02 Score=29.04 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHH-hcCCC--hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 006912 10 QEQGFNEICRLLEQQI--SPSSTADKSQIWQQLQQY-SQFPD--FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (626)
Q Consensus 10 ~~~~~~~l~~~l~~~~--s~d~~~~r~~a~~~L~~~-~~~p~--~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~ 84 (626)
+...+..+.|.|.... +|+.. .|+.+...+..+ ...|+ -...+.++|.. ...+.+|-.+...+|..+...|.
T Consensus 435 ~~~~~~~~~q~L~~i~~~~p~~~-lR~~~~~ll~~iL~~~p~~~rf~~i~dlLe~--c~~~~~k~~~I~~lKd~i~~a~~ 511 (633)
T PF08568_consen 435 PSEVFMQFLQALLLISVYCPSPE-LRKIAFTLLTRILHLFPEETRFKFIRDLLEN--CPFESLKASAIGWLKDEILKALQ 511 (633)
T ss_pred CHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHCCcHhHHHHHHHHHhc--CCCHhHHHHHHHHHHHHHHHHhc
Confidence 4567778888777664 78888 999999999985 44554 34456777765 78899999999999999876655
Q ss_pred c
Q 006912 85 S 85 (626)
Q Consensus 85 ~ 85 (626)
.
T Consensus 512 ~ 512 (633)
T PF08568_consen 512 S 512 (633)
T ss_pred c
Confidence 4
No 390
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=39.98 E-value=6e+02 Score=28.76 Aligned_cols=107 Identities=20% Similarity=0.095 Sum_probs=61.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhccchHH-HHhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhCccchhhhHH
Q 006912 184 RLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-FVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLR 261 (626)
Q Consensus 184 ~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~-~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 261 (626)
.+++.++..+...+..|+.-|..+. .|..+ .+.+-+.+..++..+. +....+|....+....+.+...+.+.++++
T Consensus 48 vIvKnLqKRDivTK~rALqDLiq~n--D~sQF~NeqFLna~avlfprLsIev~~~~rl~~~qf~s~L~~~l~KKi~k~lk 125 (1525)
T COG5219 48 VIVKNLQKRDIVTKCRALQDLIQWN--DPSQFDNEQFLNALAVLFPRLSIEVEMNPRLEGLQFDSRLYEILSKKIGKRLK 125 (1525)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcc--CHhhhcHHHHHHHHHHHhhheeeeeeeccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444443 23332 2233333444444333 234457788888888888877777888888
Q ss_pred HHHHHHHhhccCCChHHHHHHH-hHHHHhhcc
Q 006912 262 NLFEYMLQVNKDTDDDVALEAC-EFWHSYFEA 292 (626)
Q Consensus 262 ~l~~~~~~~~~~~~~~v~~~a~-~~l~~l~~~ 292 (626)
..++..+-++.+.+..|...|. ++...+.+.
T Consensus 126 ~~i~~~llg~~d~d~sVsv~a~~~~~~~~~ed 157 (1525)
T COG5219 126 KTILRGLLGLKDVDDTVSVEANIDTLLEIVED 157 (1525)
T ss_pred hhhhHHHHhhcchhhhcccccchHHHHHHhhh
Confidence 7777777677777766655553 334444443
No 391
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=39.76 E-value=2e+02 Score=23.10 Aligned_cols=98 Identities=10% Similarity=0.047 Sum_probs=53.6
Q ss_pred hhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchh
Q 006912 99 LPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI 178 (626)
Q Consensus 99 ~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 178 (626)
++.|..+...++....-++...-. -+++...+.+.+....+..|-..+.++..++.......... ..
T Consensus 6 L~~L~~s~~~I~~lt~~~~~~~~~------a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~-------f~ 72 (121)
T smart00582 6 LESLNNSQESIQTLTKWAIEHASH------AKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSE-------FG 72 (121)
T ss_pred HHhccccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHH-------HH
Confidence 334444555555555544443321 24566666666666556677778888888877665431111 11
Q ss_pred hhhHHHHHHhc----CCCChHHHHHHHHHHHHHHh
Q 006912 179 NIFLPRLLQFF----QSPHTSLRKLSLGSVNQFIM 209 (626)
Q Consensus 179 ~~il~~l~~~l----~~~~~~vr~~al~~l~~~~~ 209 (626)
..+.|.+...+ ...++.+|....+.+.-+-+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~ 107 (121)
T smart00582 73 DELGPVFQDALRDVLGAANDETKKKIRRLLNIWEE 107 (121)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 22222222222 23346788888888887765
No 392
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=39.44 E-value=61 Score=24.64 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcc
Q 006912 448 LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (626)
Q Consensus 448 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~ 512 (626)
.-|.+++..|+.+...++. ..+++++.++..|.....| ...|+..+-.+|+.+-+.-.+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py-----~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D 62 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPY-----DVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S-------SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHcCC-----CCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcc
Confidence 3467788888888887765 4678999999988777765 567888899999998766443
No 393
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=38.99 E-value=2e+02 Score=23.03 Aligned_cols=62 Identities=8% Similarity=0.135 Sum_probs=38.7
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhccc
Q 006912 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE 513 (626)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~ 513 (626)
.+..|..+...++....|++... .+-..++..+.+.+....+.-+......+..++.+++..
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~--------------~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~ 66 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHA--------------SHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRK 66 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhc
Confidence 34455566667777776665422 223446666666666555556777888888888887543
No 394
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=38.80 E-value=56 Score=21.13 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=25.8
Q ss_pred HHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhc
Q 006912 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (626)
Q Consensus 90 ~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~ 124 (626)
..+++|+.+++.|...+.. |..+..+++.+.+..
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 3568889999988766555 888888888887664
No 395
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=37.79 E-value=5.4e+02 Score=27.55 Aligned_cols=154 Identities=11% Similarity=0.149 Sum_probs=81.6
Q ss_pred HHHhHhhhhhCC--cHHHHHHHHHHHHHHHh----h---c-CcCchHHHHHHHHHHhcc--CChhHHhHHHHHHHHHhhh
Q 006912 94 IKSELLPCLGAA--DRHIRSTVGTIVSVVVQ----L---G-GIAGWLELLQALVTCLDS--NDINHMEGAMDALSKICED 161 (626)
Q Consensus 94 i~~~L~~~l~~~--~~~vr~~~~~~l~~i~~----~---~-~~~~~~~ll~~l~~~l~~--~~~~~r~~~l~~l~~l~~~ 161 (626)
....+-+.+.+. +..++.+.|+++..|.. . + ....|.+.+..+...+.. ..++....+.-....+...
T Consensus 130 Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~khw~~afPL~t~lLCv 209 (552)
T PF14222_consen 130 FMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKHWNVAFPLVTTLLCV 209 (552)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHhc
Confidence 334444445433 55699998888777753 2 1 235788877666554432 2255666676666666555
Q ss_pred chhccccCCCCCccchhh-hhHHHHHHhcCCCChHHHHHHHHHHHHHHh-cc----c---hHHHHhHHHHHHHHHHhcC-
Q 006912 162 IPQVLDSDVPGLAECPIN-IFLPRLLQFFQSPHTSLRKLSLGSVNQFIM-LM----P---SALFVSMDQYLQGLFLLSN- 231 (626)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~-~il~~l~~~l~~~~~~vr~~al~~l~~~~~-~~----~---~~~~~~~~~~l~~l~~~~~- 231 (626)
.+.++ |..... .++..+..-+++. ..|..++.|+..++- ++ + ......+..+++.++..-+
T Consensus 210 S~~e~-------F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk 280 (552)
T PF14222_consen 210 SPKEF-------FLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKK 280 (552)
T ss_pred CcHHH-------HHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCC
Confidence 54421 112233 3444444445554 778888888887662 22 2 2233445555666654211
Q ss_pred ---CCCHHHHHHHHHHHHHHHhhCccch
Q 006912 232 ---DPSAEVRKLVCAAFNLLIEVRPSFL 256 (626)
Q Consensus 232 ---~~~~~~~~~~~~~l~~l~~~~~~~~ 256 (626)
..|.......++.+..+...++++.
T Consensus 281 ~~i~~D~~~~~~lv~ii~~I~~~~~df~ 308 (552)
T PF14222_consen 281 GWIPRDPEPLNPLVQIIRFIGYKHLDFA 308 (552)
T ss_pred cccCCChhhhhhHHHHHHhHhhhCcchH
Confidence 1222344444555555555666543
No 396
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=37.28 E-value=1.5e+02 Score=30.84 Aligned_cols=134 Identities=13% Similarity=0.026 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhhcC---c-chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchh-hhH-HHHHHHHhhh
Q 006912 368 RKCSAAALDVLSNVFG---D-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY-PHL-SEIVAFLIPL 441 (626)
Q Consensus 368 r~~a~~~l~~l~~~~~---~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~-~~l-~~l~~~l~~~ 441 (626)
..++..+|..+++... . -.-..+.+.+.+.+.+|+ ..+...+...+....-... .+. .++ ..++..+...
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pe---imi~~~~t~~icn~vv~fs-nL~~~fL~~~iIdvl~~~ 481 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPE---IMIEFPDTIDICNKVVPFS-NLGAGFLEKSIIDVLVNL 481 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCcc---ceeeccchhhhhheeeecc-chHHHHHHhhHHHHHHHH
Confidence 3556677777766541 1 111245666777777876 5555444433333222111 111 122 2255666666
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 006912 442 LDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (626)
Q Consensus 442 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (626)
+...+..+|....|++..+.-.+++.. ..+..-.--+..++...+|+...|+..+...+.++.-
T Consensus 482 v~sKDdaLqans~wvlrHlmyncq~~e---kf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 482 VMSKDDALQANSEWVLRHLMYNCQKNE---KFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhcchhhhhhcchhhhhhhhhcCcchh---hhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 666677889999999987776655320 1122222336778888889999999999999999864
No 397
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=35.93 E-value=6.6e+02 Score=28.06 Aligned_cols=161 Identities=9% Similarity=0.008 Sum_probs=82.7
Q ss_pred hHHHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhc--
Q 006912 49 FNNYLAFILARAE--GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-- 124 (626)
Q Consensus 49 ~~~~l~~il~~~~--~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~-- 124 (626)
....+.++|.+.. ..++.+|..=-..++....+.--.+. ..+.+.+...|-++++..|.=|...+..+.+..
T Consensus 78 ~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~~~~----~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~ 153 (727)
T PF12726_consen 78 LLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPLKLP----KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYS 153 (727)
T ss_pred HHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCcccc----ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccC
Confidence 4455666675421 23444555433333332221111111 344456666677889999999999988887641
Q ss_pred -CcCchH-----HHHHHHHHHhcc--CChhHHhHHHHHHHHHhhhchhcc-ccCCCCCccchhhhhHHHHHHhcCCCChH
Q 006912 125 -GIAGWL-----ELLQALVTCLDS--NDINHMEGAMDALSKICEDIPQVL-DSDVPGLAECPINIFLPRLLQFFQSPHTS 195 (626)
Q Consensus 125 -~~~~~~-----~ll~~l~~~l~~--~~~~~r~~~l~~l~~l~~~~~~~~-~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 195 (626)
....|. ++...+... +. .++.....--..+..+++.++... ....++ ..+..++..++..+.++...
T Consensus 154 ~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~---~~~~~i~~L~~~hL~~~~~~ 229 (727)
T PF12726_consen 154 ITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRA---LELDPIYRLLLNHLSSNLSP 229 (727)
T ss_pred CchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhc---cccchHHHHHHHHhhcccch
Confidence 233342 233333333 22 123222223333444444443321 111110 01222666778888887566
Q ss_pred HHHHHHHHHHHHHhccchHHHH
Q 006912 196 LRKLSLGSVNQFIMLMPSALFV 217 (626)
Q Consensus 196 vr~~al~~l~~~~~~~~~~~~~ 217 (626)
.-...++|+..+++..|..+-.
T Consensus 230 ~l~~lL~~l~~lL~k~~~~FW~ 251 (727)
T PF12726_consen 230 PLPILLRCLSILLEKLGSDFWD 251 (727)
T ss_pred hHHHHHHHHHHHHHhCHHHHhc
Confidence 6778889999999887765543
No 398
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=35.82 E-value=1.6e+02 Score=25.46 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=34.5
Q ss_pred CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhcc
Q 006912 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (626)
Q Consensus 127 ~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~ 166 (626)
+....++|.+..+++|........|+..+..+++.+.+.+
T Consensus 65 d~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I 104 (164)
T PF13925_consen 65 DLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVI 104 (164)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3448899999999999999999999999999988777543
No 399
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=35.13 E-value=3.8e+02 Score=25.05 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCC--HHHHHHHHHHHHHHHhhCcc---chhhhHHHHHHH
Q 006912 223 LQGLFLLSNDPS--AEVRKLVCAAFNLLIEVRPS---FLEPHLRNLFEY 266 (626)
Q Consensus 223 l~~l~~~~~~~~--~~~~~~~~~~l~~l~~~~~~---~~~~~l~~l~~~ 266 (626)
++.+...+.+++ +-+|..++.++..++...+. .+..|+..++..
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNY 161 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 344555556554 56899999999999887664 344444555443
No 400
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=34.65 E-value=4.8e+02 Score=26.09 Aligned_cols=264 Identities=11% Similarity=0.039 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHH-hh-
Q 006912 235 AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVL-LS- 312 (626)
Q Consensus 235 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l-~~- 312 (626)
...+..+.+.+..+..+.|+.-.. -+..-+.+..|.|-.+|..|+.-|-.+|.. .....+.+.+.+++.-. +.
T Consensus 38 ~k~k~lasq~ip~~fk~fp~la~~----a~da~~d~~ed~d~~ir~qaik~lp~fc~~-d~~~rv~d~l~qLLnk~sl~~ 112 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSLADE----AIDAQLDLCEDDDVGIRRQAIKGLPLFCKG-DALSRVNDVLVQLLNKASLTG 112 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchhhhH----HHHhhhccccccchhhHHHHHhccchhccC-chhhhhHHHHHHHHHHHHHHH
Confidence 344566777777777777665433 333444567888889999999998888886 22222333333333211 00
Q ss_pred hcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-----chH
Q 006912 313 NMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-----EIL 387 (626)
Q Consensus 313 ~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-----~~~ 387 (626)
.+...+ . . |+ .+|.-+...+..=...+++ ++-
T Consensus 113 Lf~~~~----------------------------------~---~-D~-----~irek~l~fi~tKl~~l~~e~L~kevE 149 (460)
T KOG2213|consen 113 LFGQIE----------------------------------V---G-DE-----QIREKVLKFIRTKLITLKGEVLTKEVE 149 (460)
T ss_pred HHhhhh----------------------------------h---h-hH-----HHHHHHHHHHHHHhhcccHHHhhhHHH
Confidence 000000 0 0 00 2454444333321112222 333
Q ss_pred HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhh-----cCCCchHHHHHHHHHHHHHHH
Q 006912 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPL-----LDDKFPLIRSISCWTLSRFSK 462 (626)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~-----l~d~~~~vr~~a~~~l~~l~~ 462 (626)
..++..+.+.+.+-. -..-...+..|+.+...-...-...+..++...-.. +.-+++.+...-+.|+..-..
T Consensus 150 ~~iv~eikkal~dVt---geef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvP 226 (460)
T KOG2213|consen 150 RHIVDEIKKALEDVT---GEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVP 226 (460)
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhh
Confidence 456666667776654 343444444455544332222233444444433221 232445555555555544444
Q ss_pred HHhhhcCCCchhhhHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhhhh--HHHHH
Q 006912 463 FIVQDIGHQNGREQFEKVLMGLLKR-ILDTNKRVQEAACSAFATLEEEAA-EELAPRLEIILQHLMMAFGKYQ--RRNLR 538 (626)
Q Consensus 463 ~~~~~~~~~~~~~~~~~ll~~l~~~-l~d~~~~v~~~a~~al~~l~~~~~-~~~~~~l~~i~~~l~~~l~~~~--~~~~~ 538 (626)
++... .....|+.-+-..++.. ........+..-+++|+.+...+. +.....++.+++.|...+...+ .+...
T Consensus 227 fFarg---apSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~ee~~f 303 (460)
T KOG2213|consen 227 FFARG---APSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGEEMQF 303 (460)
T ss_pred hhhcC---CchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccHHHHH
Confidence 44321 12223333333333322 111124456666777776665542 3445567777777766665543 23333
Q ss_pred HHHHHHHHHHHHhc
Q 006912 539 IVYDAIGTLADAVG 552 (626)
Q Consensus 539 ~~~~~l~~i~~~~~ 552 (626)
.-.+|+-.+....|
T Consensus 304 syvEClly~~h~Lg 317 (460)
T KOG2213|consen 304 SYVECLLYALHHLG 317 (460)
T ss_pred HHHHHHHHHHHHHh
Confidence 44455544444433
No 401
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=33.23 E-value=1.9e+02 Score=25.50 Aligned_cols=115 Identities=19% Similarity=0.225 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 006912 8 QPQEQGFNEICRLLEQQISPSST---ADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (626)
Q Consensus 8 ~~~~~~~~~l~~~l~~~~s~d~~---~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~ 84 (626)
.|+++..++|..++.. .|-.. +.|..--+.=..+.+.|.+.+.++.-+. -.++....-+..++ ..|.
T Consensus 4 ~p~~~~~~~L~~i~~~--~p~~~L~~~ek~~lW~~R~~l~~~p~aL~~~L~sv~---w~~~~~~~~~~~ll-----~~W~ 73 (184)
T PF00613_consen 4 KPNEEERDQLEAIINK--DPLQELTEEEKELLWKYRYYLMNNPEALPKLLRSVD---WWNPEEVSEAYQLL-----LQWP 73 (184)
T ss_dssp ---HHHHHHHHHHHTS---TTSSS-HHHHHHHHHTHHHHTTSGGGHHHHHTTST---TTSHHHHHHHHHHH-----HTSH
T ss_pred CcCHHHHHHHHHHHhc--CCCccCCHHHHHHHHHCCHHhhhCchHHHHHHhhCC---CCchhhHHHHHHHH-----HcCC
Confidence 4667777777777653 22222 1232222222223457887775554221 33444333444444 4699
Q ss_pred cCChhHHHHHHHhHhhhhhC--CcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccC
Q 006912 85 SMSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN 143 (626)
Q Consensus 85 ~l~~~~~~~i~~~L~~~l~~--~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~ 143 (626)
.+++... +..|.. +++.||..|...+..+ +.+..-.++|.|.|.+.-+
T Consensus 74 ~~~p~~A-------L~LL~~~f~~~~VR~yAv~~L~~~----~d~~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 74 PISPEDA-------LELLSPNFPDPFVRQYAVRRLESL----SDEELLFYLPQLVQALRYE 123 (184)
T ss_dssp CTTHHHH-------HHCTSTT---HHHHHHHHHHHCTS-----HHHHHHHHHHHHHHGGGS
T ss_pred CCCHHHH-------HHHHHhhccHHHHHHHHHHHHHHc----CchHHHHHHHHHHHHheec
Confidence 8877442 334432 3589999988877552 3456677889999988754
No 402
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=32.44 E-value=7.7e+02 Score=27.79 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHH
Q 006912 476 QFEKVLMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR-----RNLRIVYDAIGTLAD 549 (626)
Q Consensus 476 ~~~~ll~~l~~~l~d~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~-----~~~~~~~~~l~~i~~ 549 (626)
..++++-.+.+.+..++ ..-+.....++++++...++.+.|....+++.+.++...... ...+..++.++.++.
T Consensus 530 ~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~~ 609 (947)
T COG5657 530 LLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALVF 609 (947)
T ss_pred cHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 34556656666666543 566888999999999988888999888888888777654321 224466777776665
Q ss_pred HhccccCChhhhhhhhHHHHHHHh
Q 006912 550 AVGFELNQPVYLDILMPPLIAKWQ 573 (626)
Q Consensus 550 ~~~~~~~~~~~~~~l~~~l~~~~~ 573 (626)
... ..+++.+|.++..+.
T Consensus 610 ~~~------~~~~~~ip~l~~~l~ 627 (947)
T COG5657 610 LKS------GMCEITIPTLVLALV 627 (947)
T ss_pred hhh------cccccchHHHHHhhC
Confidence 442 245566666665554
No 403
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=32.43 E-value=3.8e+02 Score=24.22 Aligned_cols=166 Identities=13% Similarity=0.077 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhc
Q 006912 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~ 141 (626)
=..|..|..|-..++ ..+.+....+...+-.+..++....|..+...+....+... ++-++.+...+.
T Consensus 23 v~~P~~R~lak~~~~--------~~~~~~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~----~~~~~~~~~~l~ 90 (208)
T cd07064 23 IKTPERRALSKPFLK--------ESKLPDKEELWELVLELWQQPEREYQYVAIDLLRKYKKFLT----PEDLPLLEELIT 90 (208)
T ss_pred CChHHHHHHHHHHHH--------HcCCCcHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHc
Confidence 345666766644443 12222233344344445556666677776665555433322 223445555555
Q ss_pred c-CChhHHhH-HHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhH
Q 006912 142 S-NDINHMEG-AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (626)
Q Consensus 142 ~-~~~~~r~~-~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 219 (626)
. +++++... +-.+++.+.... +...+.+..-..+.+.=+|..|+-+...+.... ..
T Consensus 91 ~~~~Wd~vD~~~~~i~g~~~~~~----------------~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~------~~ 148 (208)
T cd07064 91 TKSWWDTVDSLAKVVGGILLADY----------------PEFEPVMDEWSTDENFWLRRTAILHQLKYKEKT------DT 148 (208)
T ss_pred CCchHHHHHHHHHHHhHHHHhCC----------------hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc------CH
Confidence 4 45655443 333334433221 223456777778888778888876654444321 12
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHH
Q 006912 220 DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR 261 (626)
Q Consensus 220 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 261 (626)
..+...+...+.|++.-+++.+-..|-.+....++.+..++.
T Consensus 149 ~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~ 190 (208)
T cd07064 149 DLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFVA 190 (208)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 233455556677777778888888999999888887666554
No 404
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=32.27 E-value=2e+02 Score=25.21 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=38.4
Q ss_pred ChhHHhHHHHHHHHHhhhchhc--cccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 006912 144 DINHMEGAMDALSKICEDIPQV--LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (626)
Q Consensus 144 ~~~~r~~~l~~l~~l~~~~~~~--~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (626)
+......++.|+..++..-... +.. .+..+..+...+.+++..+|..+++.|..++
T Consensus 129 ~~~~~~~~l~Clkal~n~~~G~~~v~~---------~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 129 DIDIEHECLRCLKALMNTKYGLEAVLS---------HPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHC---------SSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccHHHHHHHHc---------CcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3456667788888777654321 111 2567788999999999999999999998764
No 405
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.07 E-value=2.3e+02 Score=21.32 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHHhc---CCCh-HHHHHHHHhhcCCCCHHHHHHHHHHH
Q 006912 8 QPQEQGFNEICRLLEQQISPSS--TADKSQIWQQLQQYSQ---FPDF-NNYLAFILARAEGKSVEIRQAAGLLL 75 (626)
Q Consensus 8 ~~~~~~~~~l~~~l~~~~s~d~--~~~r~~a~~~L~~~~~---~p~~-~~~l~~il~~~~~~~~~~r~~a~~~l 75 (626)
...++.+.+..++|..+.+.++ -++|++|++....+.+ .|.. ....+.+|.. -+++|++=.++-..+
T Consensus 9 ~d~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLee-isnDPNmP~h~RT~i 81 (93)
T COG1698 9 NDSEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEE-ISNDPNMPLHARTLI 81 (93)
T ss_pred hhhHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHH-HhcCCCCchHHHHHH
Confidence 3467788888898888654321 1489999999888765 3332 1223444432 144555544444444
No 406
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=31.05 E-value=2.9e+02 Score=22.41 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=40.6
Q ss_pred HHHHHHHHhhcCc-chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH
Q 006912 372 AAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL 431 (626)
Q Consensus 372 ~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l 431 (626)
...+..++...-+ .-...++..+.+.+...+..+|+...-|+..+..+..+.++.+...+
T Consensus 21 ~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~ 81 (125)
T PF01417_consen 21 GKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDEL 81 (125)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3455566665433 55678889998888333334499999999999998887765554433
No 407
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=30.52 E-value=4.7e+02 Score=24.65 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHccCc--cchhhhHH-HHHHHHhhhcCCC---chHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHH
Q 006912 406 WKDREAAVLALGAIAEGCI--KGLYPHLS-EIVAFLIPLLDDK---FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK 479 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~--~~~~~~l~-~l~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 479 (626)
...+.-+++++..+...-. ..+..+.. .++..+....... +..+|.+++..+-+++-+..... ...+....
T Consensus 124 ~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~---~~~~~~~~ 200 (268)
T PF08324_consen 124 PANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNR---SDEEWQSE 200 (268)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCT---S-CCHHHH
T ss_pred HHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcC---CChHHHHH
Confidence 6667777777777665432 22233444 4555554444443 89999999999999988776531 12334445
Q ss_pred HHHHHHHHhcc--CCHHHHHHHHHHHHHHH
Q 006912 480 VLMGLLKRILD--TNKRVQEAACSAFATLE 507 (626)
Q Consensus 480 ll~~l~~~l~d--~~~~v~~~a~~al~~l~ 507 (626)
++..+.+.+.. .++.+..+++-|+++++
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 66777764332 47889999999999998
No 408
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=30.05 E-value=7.6e+02 Score=26.97 Aligned_cols=143 Identities=13% Similarity=0.050 Sum_probs=77.3
Q ss_pred CCCCCHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHH-hc-CCChHH-HHHHHHhhcCCCCHHHHHHHH-HHHHHHH
Q 006912 6 AWQPQEQGFNEICRLLEQ--QISPSSTADKSQIWQQLQQY-SQ-FPDFNN-YLAFILARAEGKSVEIRQAAG-LLLKNNL 79 (626)
Q Consensus 6 ~~~~~~~~~~~l~~~l~~--~~s~d~~~~r~~a~~~L~~~-~~-~p~~~~-~l~~il~~~~~~~~~~r~~a~-~~l~~~i 79 (626)
|.+.+++.-..|..+|-+ ..+|.-. +|..|.+.|.+. .. .|..+. .++.++. .....|...+ -.+++.+
T Consensus 376 S~s~~~~lqt~L~hll~~~alFDpel~-vRr~a~Aal~E~iGR~~s~a~g~~lIslIN----~~sv~r~s~csg~~~r~~ 450 (993)
T COG5234 376 SKSAIEGLQTNLIHLLLQTALFDPELN-VRRAATAALFEVIGRHASIADGLSLISLIN----YVSVTRISNCSGDLCRKV 450 (993)
T ss_pred ccccchhHHHHHHHHHHhhhhcCchhh-hhhHHHHHHHHHhccCCCcccchhhhhhcc----ceecchhhhcchHHHHHh
Confidence 445566644445555544 4577777 999999999985 33 344432 3444441 1111122111 2233333
Q ss_pred HHhhccC-ChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHH
Q 006912 80 RTAYKSM-SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKI 158 (626)
Q Consensus 80 ~~~~~~l-~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l 158 (626)
.+++++ +.+ ...+..|++-|.+-++.++...+.++..+.+. +...|-++|.+..-+.++- -.+..++..+
T Consensus 451 -~~~~k~~~Ce--dVF~diLl~Nl~H~~~~~k~~~~y~l~~liK~--~~~~p~yl~~Il~k~~sdf----i~~~~il~~~ 521 (993)
T COG5234 451 -AHFPKFRSCE--DVFQDILLTNLQHWDVKVKQLSAYSLRQLIKY--PKELPIYLPPILDKLSSDF----IFGYTILASI 521 (993)
T ss_pred -cCccccchHH--HHHHHHHHhhhhccchhhhhhccccHHHHhcC--cccCchhhhHHhhhCchhh----hcchhhHHHH
Confidence 233322 222 44455577777777888899999999988764 3445556666655554321 1233445555
Q ss_pred hhhc
Q 006912 159 CEDI 162 (626)
Q Consensus 159 ~~~~ 162 (626)
.+.+
T Consensus 522 ~k~F 525 (993)
T COG5234 522 IKGF 525 (993)
T ss_pred HHHh
Confidence 5544
No 409
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=29.72 E-value=1.6e+02 Score=25.78 Aligned_cols=55 Identities=15% Similarity=0.072 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHccCccchhh--hHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYP--HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~--~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (626)
...-..++.|+..+...-.+ +.. .-+..+..+...+.++++.+|..++..|+.+|
T Consensus 130 ~~~~~~~l~Clkal~n~~~G-~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTKYG-LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHTSSHHH-HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHH-HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 56778889999888875421 111 12346788888898999999999999988776
No 410
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=29.55 E-value=2.2e+02 Score=22.61 Aligned_cols=71 Identities=11% Similarity=0.131 Sum_probs=47.1
Q ss_pred HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHH-HHHHhhhcCCCchHHHHHHHHHHHHHH
Q 006912 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEI-VAFLIPLLDDKFPLIRSISCWTLSRFS 461 (626)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l-~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (626)
..++..+.+.+.... +..|-.++..+..++..++.....++... .+.+.......++.+|......+..+.
T Consensus 36 ~~iv~~i~~~i~~~~---~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW~ 107 (114)
T cd03562 36 KEIVEIIEKHIKKCP---PEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIWE 107 (114)
T ss_pred HHHHHHHHHHHHhCC---cccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 456667777777766 78899999999999998865443333332 444444555667777776666655544
No 411
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=28.62 E-value=1e+02 Score=22.31 Aligned_cols=31 Identities=19% Similarity=0.075 Sum_probs=27.1
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhhch
Q 006912 133 LQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (626)
Q Consensus 133 l~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~ 163 (626)
++.+..+..|..+..|..|+.+|+.++....
T Consensus 41 i~El~~L~RSsv~~QR~~al~~L~~Il~~~~ 71 (73)
T PF08620_consen 41 IQELFHLSRSSVPSQRCIALQTLGRILYRAG 71 (73)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 7888999999999999999999999887543
No 412
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=27.84 E-value=5e+02 Score=24.17 Aligned_cols=139 Identities=19% Similarity=0.217 Sum_probs=84.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHh-cCCCh----HHH------HH-HHHhh-----cC--CCCHHHHHHHHHHH
Q 006912 15 NEICRLLEQQISPSSTADKSQIWQQLQQYS-QFPDF----NNY------LA-FILAR-----AE--GKSVEIRQAAGLLL 75 (626)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~-~~p~~----~~~------l~-~il~~-----~~--~~~~~~r~~a~~~l 75 (626)
+.+.|..-...+|. .|..|...|-+-. ..|+. |.+ ++ +++.- .. +....-|..-+..|
T Consensus 26 dk~~~~i~~l~~~p---~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~L 102 (293)
T KOG3036|consen 26 DKAYQLILSLVSPP---TREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALAL 102 (293)
T ss_pred cchhhHHHHhhCCc---hHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHH
Confidence 34556666666666 7777777776643 34442 221 22 22211 00 22234466666666
Q ss_pred HHHHHHhhccCChhHH-HHHHH----hHhhhhh-----CCcHHHHHHHHHHHHHHHhhcCcC-----chHHHHHHHHHHh
Q 006912 76 KNNLRTAYKSMSPSNQ-QYIKS----ELLPCLG-----AADRHIRSTVGTIVSVVVQLGGIA-----GWLELLQALVTCL 140 (626)
Q Consensus 76 ~~~i~~~~~~l~~~~~-~~i~~----~L~~~l~-----~~~~~vr~~~~~~l~~i~~~~~~~-----~~~~ll~~l~~~l 140 (626)
-..+..+ |+.+ ..++. .+...|. .+.+.+|-.+..+|+.+++.+..+ .|.+++|...+.+
T Consensus 103 lQcvASH-----pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim 177 (293)
T KOG3036|consen 103 LQCVASH-----PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM 177 (293)
T ss_pred HHHHhcC-----cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Confidence 6666654 2333 23332 2333332 357899999999999999886432 4578889999999
Q ss_pred ccCChhHHhHHHHHHHHHhhh
Q 006912 141 DSNDINHMEGAMDALSKICED 161 (626)
Q Consensus 141 ~~~~~~~r~~~l~~l~~l~~~ 161 (626)
.+++...+..|..++.++.-.
T Consensus 178 e~GSelSKtvA~fIlqKIlld 198 (293)
T KOG3036|consen 178 ESGSELSKTVATFILQKILLD 198 (293)
T ss_pred hcccHHHHHHHHHHHHHHhhc
Confidence 988887888888888777543
No 413
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.78 E-value=6.9e+02 Score=25.78 Aligned_cols=53 Identities=9% Similarity=0.074 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhh
Q 006912 238 RKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (626)
Q Consensus 238 ~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~ 290 (626)
...++-.|..+++...-.++-.-..++..+++++.-...+.-...+.|+..++
T Consensus 280 Lrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLS 332 (791)
T KOG1222|consen 280 LRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLS 332 (791)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhh
Confidence 33445555555555443333334567777777776666666667777766653
No 414
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=27.07 E-value=1.5e+02 Score=23.70 Aligned_cols=75 Identities=23% Similarity=0.208 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh---cccccchHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHh
Q 006912 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA---AEELAPRLEIILQHLMMAFGKYQRRNLR-IVYDAIGTLADAV 551 (626)
Q Consensus 476 ~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~---~~~~~~~l~~i~~~l~~~l~~~~~~~~~-~~~~~l~~i~~~~ 551 (626)
|+..++..+... +.++.-...|..+...+++.- |.++..+...++..|+.+=++.+.+..+ .-..|+-.++-..
T Consensus 4 YlrDll~~L~~~--~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~ 81 (114)
T PF10193_consen 4 YLRDLLEYLRSD--DEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAA 81 (114)
T ss_dssp -HHHHHHHHT--------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHhcC--cCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHh
Confidence 444444444321 125777788999999999765 4488899999999988877766543321 2234444454444
Q ss_pred c
Q 006912 552 G 552 (626)
Q Consensus 552 ~ 552 (626)
+
T Consensus 82 P 82 (114)
T PF10193_consen 82 P 82 (114)
T ss_dssp G
T ss_pred h
Confidence 3
No 415
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=25.79 E-value=6.5e+02 Score=25.76 Aligned_cols=172 Identities=13% Similarity=0.002 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHH
Q 006912 29 STADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRH 108 (626)
Q Consensus 29 ~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~ 108 (626)
.. +-....+.|-.+-...+....|+.++... +....+|..|+.+|...+... ..+.-.+..+...+.-.=..+...
T Consensus 162 ~a-V~~evAq~LCD~iR~~~~lD~Llrmf~aP-n~et~vRve~~rlLEq~~~ae--N~d~va~~~~~~Il~lAK~~e~~e 237 (832)
T KOG3678|consen 162 AA-VGREVAQGLCDAIRLDGGLDLLLRMFQAP-NLETSVRVEAARLLEQILVAE--NRDRVARIGLGVILNLAKEREPVE 237 (832)
T ss_pred hh-hhHHHHHhhhhHhhccchHHHHHHHHhCC-chhHHHHHHHHHHHHHHHhhh--hhhHHhhccchhhhhhhhhcCcHH
Q ss_pred HHHHHHHHHHHHHhhcCcCch----HHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHH
Q 006912 109 IRSTVGTIVSVVVQLGGIAGW----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR 184 (626)
Q Consensus 109 vr~~~~~~l~~i~~~~~~~~~----~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~ 184 (626)
..+..+.++..++++...... .+.+..++-.+.-.+|.....+..+|+.+.-.-.......... +.+-.-
T Consensus 238 ~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmve------Kr~~EW 311 (832)
T KOG3678|consen 238 LARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVE------KRAAEW 311 (832)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHH------hhhhhh
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhc
Q 006912 185 LLQFFQSPHTSLRKLSLGSVNQFIML 210 (626)
Q Consensus 185 l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (626)
++.+..+.+.-.|..|+-+...++..
T Consensus 312 LF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 312 LFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred hhhhhcchHHHHHHHHHHHHhhhhhh
No 416
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=25.61 E-value=1.8e+02 Score=20.56 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=28.2
Q ss_pred HhhccCChhHHHHHHHhHhhhhhCCcHH-HHHHHHHHHHH
Q 006912 81 TAYKSMSPSNQQYIKSELLPCLGAADRH-IRSTVGTIVSV 119 (626)
Q Consensus 81 ~~~~~l~~~~~~~i~~~L~~~l~~~~~~-vr~~~~~~l~~ 119 (626)
..|..++++.++.+...+...|..-... |+......+..
T Consensus 15 ~ly~~l~~~er~~lv~nia~~l~~v~~~~i~~r~l~~f~~ 54 (68)
T PF06628_consen 15 DLYRVLSDEERERLVENIAGHLSGVSDEEIQERVLAYFYK 54 (68)
T ss_dssp HHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHH
Confidence 3477788999999999998888776555 77765544443
No 417
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=25.26 E-value=4.4e+02 Score=22.62 Aligned_cols=121 Identities=15% Similarity=0.088 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCC
Q 006912 112 TVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (626)
Q Consensus 112 ~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~ 191 (626)
....++..+++.. ...-++++..+.+.+.+........-..+|+.++...+-.+.+. ..-+..++..+..
T Consensus 37 LG~~IL~~~fk~h-~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~---------~~~l~~~ld~l~~ 106 (158)
T PF14676_consen 37 LGIQILLELFKVH-EMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLEC---------SSKLKELLDYLSF 106 (158)
T ss_dssp HHHHHHHHHHHH--GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S----------HHHHGGGGGTTT
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHH---------HHHHHHHHHHHHh
Confidence 4455666666553 23335666666665543322212234788888888887655322 1222334444444
Q ss_pred CChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006912 192 PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (626)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~ 246 (626)
-..++...-++++.-++..- ..+.++ ++-.+.+.+-..+.+.|..|...+.
T Consensus 107 lp~~~a~~ll~Al~PLi~~s-~~lrd~---lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 107 LPGDVAIGLLRALLPLIKFS-PSLRDS---LILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp S-HHHHHHHHHHHHHHHTT--HHHHHH---HHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcC-HHHHHH---HHHHHHHHHccccHHHHHHHHHHhc
Confidence 45566666666776666542 233333 3566667766677888888776553
No 418
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=24.99 E-value=7.3e+02 Score=25.09 Aligned_cols=238 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhcc---
Q 006912 9 PQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS--- 85 (626)
Q Consensus 9 ~~~~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~--- 85 (626)
|....++.+..++--.+.+..- .++-|.+++.+ .|+--|+.++. +.+|.-|.+--..|.+.-.+.-..
T Consensus 144 ~awphLqlvye~~Lrf~~sp~~-d~~vaK~yid~-----~FvlkLLdLFd---SEDpRERe~LKT~LhrIygKfl~~r~f 214 (457)
T KOG2085|consen 144 PAWPHLQLVYEFLLRFLESPDF-DPSVAKKYIDQ-----KFVLKLLDLFD---SEDPREREFLKTILHRIYGKFLVHRPF 214 (457)
T ss_pred CCchHHHHHHHHHHHHHhCccc-CHHHHHHHhhH-----HHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHhhhHHH
Q ss_pred ---------------------------------------CChhHHHHHHHhHhhhhh-CCcHHHHHHHHHHHHHHHhhcC
Q 006912 86 ---------------------------------------MSPSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGG 125 (626)
Q Consensus 86 ---------------------------------------l~~~~~~~i~~~L~~~l~-~~~~~vr~~~~~~l~~i~~~~~ 125 (626)
+-++-+-.+...|+++=. ..-..-..+++.|+..+.+.+
T Consensus 215 irk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd- 293 (457)
T KOG2085|consen 215 IRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKD- 293 (457)
T ss_pred HHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCccccccccceeeeeeeccC-
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHH
Q 006912 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (626)
Q Consensus 126 ~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~ 205 (626)
+.--+.++..+.+..--.+..-...-+.-+..+.+......= ......++..+..++++++-.|...|+....
T Consensus 294 ~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eF-------qk~~~PLf~qia~c~sS~HFQVAEraL~~wn 366 (457)
T KOG2085|consen 294 PKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEF-------QKIMVPLFRQIARCVSSPHFQVAERALYLWN 366 (457)
T ss_pred ccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHH-------HHHhHHHHHHHHHHcCChhHHHHHHHHHHHh
Q ss_pred HH--HhccchHHHHhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhCccchhhhHHHH
Q 006912 206 QF--IMLMPSALFVSMDQYLQGLFLLSNDP-SAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (626)
Q Consensus 206 ~~--~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l 263 (626)
.= ...+.......++-+.+.|.+..+.- +..+...++.++..+.+..+..|.......
T Consensus 367 Ne~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~~y 427 (457)
T KOG2085|consen 367 NEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLALY 427 (457)
T ss_pred hHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
No 419
>KOG4346 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.83 E-value=6.6e+02 Score=27.32 Aligned_cols=113 Identities=18% Similarity=0.099 Sum_probs=67.4
Q ss_pred hhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHh
Q 006912 473 GREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIV-YDAIGTLADAV 551 (626)
Q Consensus 473 ~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~-~~~l~~i~~~~ 551 (626)
.+.|+..++..+. ..++..+.++|..++.+++...+..+..+...+++.++.+=++......... ..|+..+.-+.
T Consensus 506 ~PaYV~Dl~emL~---~~E~yE~~eaAL~nae~LI~r~pt~~rq~A~eLlq~lLhLqn~f~~~~F~etq~~aiVa~~vT~ 582 (849)
T KOG4346|consen 506 PPAYVADLFEMLL---EKEKYEVFEAALFNAENLINRRPTGFRQIAEELLQRLLHLQNNFGTPKFKETQVDAIVAACVTQ 582 (849)
T ss_pred CchHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHHHhcC
Confidence 3455555555442 2356899999999999999988888888888888888776665543333322 34444443333
Q ss_pred ccccCChhhhhhhhHHHHHHHhcCCCCCC---ccchHHHHHHHHHHHhcc
Q 006912 552 GFELNQPVYLDILMPPLIAKWQQLPNSDK---DLFPLLECFTSIAQALGA 598 (626)
Q Consensus 552 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~~l~~~~~l~~~~g~ 598 (626)
... +.|.+..++-..+ ... +..-.++|+..-|..++.
T Consensus 583 p~p---------capylcrqf~a~n-~~YS~rQRiliL~vi~lAA~els~ 622 (849)
T KOG4346|consen 583 PPP---------CAPYLCRQFIAPN-QGYSIRQRILILSVIHLAADELSA 622 (849)
T ss_pred CCc---------chhHHHHHhhcCC-CcccHHHHHHHHHHHHHHHHHhCc
Confidence 322 2234444443221 112 223567788887777765
No 420
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=24.41 E-value=6.7e+02 Score=24.47 Aligned_cols=84 Identities=11% Similarity=0.135 Sum_probs=47.1
Q ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcc
Q 006912 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (626)
Q Consensus 433 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~ 512 (626)
+.+..=+..|.++..-++..+.|++- +..+...|+..-.+.+......-+..-++....++.+++.
T Consensus 7 e~l~~kL~~L~~TQeSIqtlS~Wli~--------------hkk~a~~IV~~Wl~~~~~~~~~~Kl~llYLaNDVvQnskr 72 (325)
T KOG2669|consen 7 EALEKKLAELSNTQESIQTLSLWLIH--------------HKKHARLIVDVWLKELKKSSVNHKLTLLYLANDVVQNSKR 72 (325)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHH--------------HhhhhhHHHHHHHHHHhccCCCceeeehhhhHHHHHHhhh
Confidence 34444445556666666666666542 3455577777777777755443344456666666666655
Q ss_pred cccchHHHHHHHHHHHHh
Q 006912 513 ELAPRLEIILQHLMMAFG 530 (626)
Q Consensus 513 ~~~~~l~~i~~~l~~~l~ 530 (626)
...+|.+.+-+.+...+.
T Consensus 73 k~~ef~~ef~~v~~~a~~ 90 (325)
T KOG2669|consen 73 KGPEFVDEFWPVVLKAFA 90 (325)
T ss_pred cCchhHHHHHHHHHHHHH
Confidence 545555554444444443
No 421
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=23.44 E-value=1e+03 Score=26.16 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhccccC--ChhhhhhhhHHHHHHHhcCCCC--CCccchHHHHHHHHHH
Q 006912 541 YDAIGTLADAVGFELN--QPVYLDILMPPLIAKWQQLPNS--DKDLFPLLECFTSIAQ 594 (626)
Q Consensus 541 ~~~l~~i~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~l~~~~~l~~ 594 (626)
+++|-.++..+|..+. .|.-+..++..+...+.....+ .+++...++++..+-.
T Consensus 461 ve~ll~ii~~~G~~LRkDDp~alk~~i~eiq~~a~~a~~s~~~pR~rFmleti~aLKn 518 (822)
T KOG2141|consen 461 VEALLTIIANCGFSLRKDDPLALKDIITEIQSKAASAKISAISPRLRFMLETISALKN 518 (822)
T ss_pred HHHHHHHHHHccchhcCCChHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHhc
Confidence 4555666666665553 3556666666666666544322 3334456666655543
No 422
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=23.34 E-value=1.6e+02 Score=23.67 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhcCCCchHHHHHHHHHHHHHHH
Q 006912 431 LSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (626)
Q Consensus 431 l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (626)
-...++.++..+.|+++.|+..|+..|-..|.
T Consensus 6 ~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 6 EDWGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 34468889999999999999999888877765
No 423
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=23.31 E-value=4.8e+02 Score=22.42 Aligned_cols=97 Identities=15% Similarity=0.357 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhc--CcCchH----HHHHHHHHHhccC--ChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhH
Q 006912 111 STVGTIVSVVVQLG--GIAGWL----ELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (626)
Q Consensus 111 ~~~~~~l~~i~~~~--~~~~~~----~ll~~l~~~l~~~--~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il 182 (626)
..++.++..+.... +.-.|. .++..+....+.+ +..+.+.++..|..++...+.... .+. -+--+
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~-~V~------~evt~ 104 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQ-LVE------QEVTL 104 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHH-HHh------ccCCH
Confidence 33444444444332 334564 4455555555543 578888999999988886654211 000 02235
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhccchH
Q 006912 183 PRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA 214 (626)
Q Consensus 183 ~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~ 214 (626)
+.+...|+.+++.++..++-.+..+....|+.
T Consensus 105 ~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 105 ESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 67888888899999999998888887666544
No 424
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=23.22 E-value=1.9e+02 Score=23.14 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 006912 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (626)
Q Consensus 476 ~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (626)
+-.-.++.++..+.|+++.|...|...|...|..
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 3455678888999999999999998888887754
No 425
>PLN03205 ATR interacting protein; Provisional
Probab=22.64 E-value=7.9e+02 Score=24.64 Aligned_cols=139 Identities=16% Similarity=0.171 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhc-CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhc
Q 006912 111 STVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (626)
Q Consensus 111 ~~~~~~l~~i~~~~-~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 189 (626)
..+.++...+.+.. +.-..+.++..|+.++.-++..+...++.+|..+.+..-..-. .+..-++..+..++....+..
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~-~~~~~~~~NWvsLfElm~QiA 380 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEK-RFEASWDANWHSLFELMNQIA 380 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcc-cccccccccHHHHHHHHHHHH
Confidence 45556666666553 3456789999999999988888888899998888776543211 111112233455555444443
Q ss_pred -CCCChHHHHHHHHHHHHHHhccchHH-HHhH--HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHh
Q 006912 190 -QSPHTSLRKLSLGSVNQFIMLMPSAL-FVSM--DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIE 250 (626)
Q Consensus 190 -~~~~~~vr~~al~~l~~~~~~~~~~~-~~~~--~~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~ 250 (626)
.++...||..|+..+..++....... .+.+ ..+++.+.+++. +....|++.++..|-.+..
T Consensus 381 v~~TEE~VrLEAvSIMnVIlmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 381 SIRTEEDVKLEALSIMNIIVMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred hccchhheeeehhhhhHHhhhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 34566899999988877764432111 1111 134555555544 2234567777666654443
No 426
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=22.31 E-value=5.5e+02 Score=22.70 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (626)
|......-.+...+..-. .....+.+..+...+. ++.||..|+..+..+..
T Consensus 55 W~~~~e~~e~~~ll~~W~----~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L~~~~d 105 (184)
T smart00145 55 WSDADEVAQALSLLKKWA----PLDPEDALELLSPKFP--DPFVRAYAVERLESASD 105 (184)
T ss_pred CCCHHHHHHHHHHHHcCC----CCCHHHHHHHhCccCC--CHHHHHHHHHHHHhCCH
Confidence 665554444444333322 1233445665555554 68999999988876654
No 427
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=21.78 E-value=4.7e+02 Score=28.43 Aligned_cols=148 Identities=15% Similarity=0.119 Sum_probs=77.3
Q ss_pred HHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHh---------cc------CChhHHhHHHHHHH
Q 006912 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL---------DS------NDINHMEGAMDALS 156 (626)
Q Consensus 92 ~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l---------~~------~~~~~r~~~l~~l~ 156 (626)
+.+.+.+...+.+.+..+|..+++-++.+++..+.+.-..++. +.+.. ++ .++-+..+++..++
T Consensus 245 ~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~-ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a 323 (993)
T COG5234 245 EVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID-IIELMTENMFLSPLENTCDIIITNELVWHGAILFFA 323 (993)
T ss_pred HHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH-HHHhcccccchhhhhCccceeecchHHHHHHHHHHH
Confidence 3444444444456678899999999999998764333333333 22221 11 23334444444443
Q ss_pred HHhhhchhccccCCCCCccchhhhhHHHHHHhcCC--------CChHHHHHHHHHHHHHHhccchHHHHhHHH-HHHHHH
Q 006912 157 KICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQ-YLQGLF 227 (626)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~-~l~~l~ 227 (626)
+....+-.... .-+.+.+..++.= ....+|..++-.+.++...-+....+.++. +.-.++
T Consensus 324 -la~~~~id~~d----------~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~ 392 (993)
T COG5234 324 -LAGAGLIDYSD----------CLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLL 392 (993)
T ss_pred -Hhhccccchhh----------hhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHH
Confidence 33322221110 1134444444431 223577777765555554433333333332 233344
Q ss_pred H-hcCCCCHHHHHHHHHHHHHHHhh
Q 006912 228 L-LSNDPSAEVRKLVCAAFNLLIEV 251 (626)
Q Consensus 228 ~-~~~~~~~~~~~~~~~~l~~l~~~ 251 (626)
+ .+-||+-.+|..+..++.+++..
T Consensus 393 ~~alFDpel~vRr~a~Aal~E~iGR 417 (993)
T COG5234 393 QTALFDPELNVRRAATAALFEVIGR 417 (993)
T ss_pred hhhhcCchhhhhhHHHHHHHHHhcc
Confidence 4 56688889999999988777765
No 428
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=21.24 E-value=1.1e+03 Score=25.72 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=47.2
Q ss_pred HHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHH
Q 006912 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (626)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (626)
.+..+...+.=.+ +..|.+.=.|++-+....+. -.++..+-+...|.+..|..+++.++|-+..
T Consensus 641 ~lR~f~h~l~yge---~~iRravPLal~llsvSNPq------~~vlDtLsk~shd~D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 641 VLRHFGHLLHYGE---PHIRRAVPLALGLLSVSNPQ------VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGA 704 (878)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHhhhccCCCc------chHHHHHHHhccCcchHHHHHHHHHhccccC
Confidence 3445555555556 88999999999888775542 1367777778889999999999998886653
No 429
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=21.21 E-value=7.8e+02 Score=24.06 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=44.7
Q ss_pred cCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHH-HHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHH
Q 006912 382 FGDEILPTLMPVIQAKLSASGDEAWKDREAAVLAL-GAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (626)
Q Consensus 382 ~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l-~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (626)
.|+.-+..++..+...+.... +...+..+.++ ..++...-+.....--+++..+.....+++| +|......+-.+
T Consensus 58 ~~ekdle~vlnsi~sLi~~~~---~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~d~~~~-aR~~Vy~~lv~l 133 (378)
T KOG2753|consen 58 IPEKDLECVLNSIVSLIKNAP---PEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGVDKPTP-ARYQVYMSLVTL 133 (378)
T ss_pred CCcchHHHHHHHHHHHHHhCC---HHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhccCCCch-HHHHHHHHHHHH
Confidence 344446677777777776654 55555544433 3344332222112333456666667666666 888877777666
Q ss_pred HHHH
Q 006912 461 SKFI 464 (626)
Q Consensus 461 ~~~~ 464 (626)
+..+
T Consensus 134 a~~~ 137 (378)
T KOG2753|consen 134 AASC 137 (378)
T ss_pred Hhhc
Confidence 6544
No 430
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=21.00 E-value=1.3e+03 Score=26.73 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=67.4
Q ss_pred hhHHHHHHhcCCCC-hHHHHHHHHHHHHHHhccch-HHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchh
Q 006912 180 IFLPRLLQFFQSPH-TSLRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (626)
Q Consensus 180 ~il~~l~~~l~~~~-~~vr~~al~~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (626)
.+...+.++++-.- ..|....++...-+.+.++. .+...+.-|.++++.+....+-.++...++.+...+-..|..++
T Consensus 62 lvsrrL~~cLsP~LPaGVH~KTLEvY~yIFe~Ig~eTL~~e~n~w~~Gl~pf~~~~si~v~s~~i~li~~yiv~Lg~~vr 141 (1618)
T COG5221 62 LVSRRLNQCLSPVLPAGVHNKTLEVYSYIFERIGRETLLKEFNFWTLGLFPFSAHCSILVVSSFIDLIERYIVPLGKDVR 141 (1618)
T ss_pred HHHHHHHhhcCCcCCcchhhhhhhHHHHHHHHHhHHHHHhhhhhhhcchhhhhhhhhhHhHHHHHHHHHhheeecCccHH
Confidence 34445555665432 36777788877777776653 34555666778888877666666666666665555555566677
Q ss_pred hhHHHHHHHHHhhccCCChHHHHHHHhHHHHh
Q 006912 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (626)
Q Consensus 258 ~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l 289 (626)
++...++-.++.++.++..+.-......+.++
T Consensus 142 ~~~~~i~isLLpg~e~es~e~~~l~~hLi~tl 173 (1618)
T COG5221 142 SYCTSILISLLPGMEFESGEYYSLRAHLIITL 173 (1618)
T ss_pred HHHHHHHHHhCCCccccccchHHHHHHHHHHH
Confidence 77777777777777665544333333333333
No 431
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=20.48 E-value=6.6e+02 Score=22.96 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHHHHHHhccchHHHHhH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006912 192 PHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (626)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 249 (626)
+.+.+|..++..++.++...+......+ .+++|.+.+....+++--+..++..+..++
T Consensus 158 ~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil 217 (315)
T COG5209 158 KFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKIL 217 (315)
T ss_pred ccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 4567999999999999988766655443 266777777776665554455555555444
No 432
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=20.40 E-value=5.4e+02 Score=21.89 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcCcchHHhHHHHHHHhhcC----CCCCChhHHHHH-HHHHHHHHccCccchhhhHHHHHHHHhhhcC
Q 006912 369 KCSAAALDVLSNVFGDEILPTLMPVIQAKLSA----SGDEAWKDREAA-VLALGAIAEGCIKGLYPHLSEIVAFLIPLLD 443 (626)
Q Consensus 369 ~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~----~~~~~~~~r~aa-l~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~ 443 (626)
..+.+++-.++..+.+..+.++.-.+..+-.. .+......|..+ ...+..+++....-+.+|...+++.....|+
T Consensus 39 ~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~ 118 (153)
T PF08146_consen 39 SSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLK 118 (153)
T ss_pred HHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777788775555555555555432 111113444444 4556677777766667777777776666554
No 433
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=20.23 E-value=5.8e+02 Score=23.70 Aligned_cols=57 Identities=25% Similarity=0.198 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHHHHhhcCc----------chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccC
Q 006912 365 WNLRKCSAAALDVLSNVFGD----------EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC 423 (626)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~----------~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~ 423 (626)
.+.|+.|.+++..++..-.+ .-+..+...+.+++.... +...|+-|+..+..++.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e--~~v~REfAvvlL~~La~~~ 204 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMRE--DQVCREFAVVLLSNLAQGD 204 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcccc--chhHHHHHHHHHHHHhccc
Confidence 46788888888888764322 225567777888887643 2888999999999998765
No 434
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.01 E-value=7.3e+02 Score=23.24 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=44.1
Q ss_pred HHHHHHhcCCCC--hHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhh
Q 006912 182 LPRLLQFFQSPH--TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (626)
Q Consensus 182 l~~l~~~l~~~~--~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 259 (626)
.+.+.+.+.+++ .-+|.+|++++..++..-|.. .+.+..++..++...-..+++. .--..++.++..++..+.+.
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~-Re~vi~~f~~ll~~~l~~~~~~--~~~~Lv~~~~dL~~~EL~~~ 189 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVHEGPIS-REEVIQYFRELLNYFLERNPSF--LWGSLVADICDLYPEELLPE 189 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhccCchH--HHHHHHHHHHhcCHHHhHHH
Confidence 445666677764 579999999999998765432 2223334444444322223332 11222345555666666565
Q ss_pred HHHHHH
Q 006912 260 LRNLFE 265 (626)
Q Consensus 260 l~~l~~ 265 (626)
+...+.
T Consensus 190 I~~~f~ 195 (249)
T PF06685_consen 190 IRKAFE 195 (249)
T ss_pred HHHHHH
Confidence 555544
Done!