Query 006912
Match_columns 626
No_of_seqs 210 out of 2026
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 12:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 100.0 1.6E-63 5.3E-68 556.7 61.7 581 4-619 2-582 (852)
2 2bpt_A Importin beta-1 subunit 100.0 8.4E-47 2.9E-51 424.4 54.1 549 15-618 4-609 (861)
3 1wa5_C Importin alpha RE-expor 100.0 2.1E-47 7.2E-52 430.1 43.6 565 14-618 4-653 (960)
4 1qgr_A Protein (importin beta 100.0 7.8E-46 2.7E-50 417.3 48.3 545 16-618 2-618 (876)
5 3m1i_C Exportin-1; heat repeat 100.0 3.3E-44 1.1E-48 407.3 42.7 571 11-617 12-699 (1049)
6 4hat_C Exportin-1; heat repeat 100.0 2.3E-42 7.8E-47 382.3 42.6 568 13-618 14-700 (1023)
7 2x19_B Importin-13; nuclear tr 100.0 1.1E-41 3.7E-46 386.1 45.7 556 13-618 22-695 (963)
8 2x1g_F Cadmus; transport prote 100.0 1.5E-41 5.2E-46 384.5 39.1 554 14-617 6-702 (971)
9 1ibr_B P95, importin beta-1 su 100.0 1.2E-40 4E-45 346.9 35.2 419 15-489 1-461 (462)
10 3gjx_A Exportin-1; transport, 100.0 7.2E-39 2.5E-43 351.7 39.8 566 13-616 26-724 (1073)
11 3ibv_A Exportin-T; karyopherin 100.0 2.8E-37 9.7E-42 341.9 39.7 558 13-617 4-710 (980)
12 1u6g_C TIP120 protein, CAND1; 100.0 7.1E-36 2.4E-40 346.4 42.6 558 15-617 6-621 (1230)
13 3a6p_A Exportin-5; exportin-5, 100.0 5.7E-34 1.9E-38 324.1 38.0 528 10-574 6-682 (1204)
14 2bpt_A Importin beta-1 subunit 100.0 1.5E-29 5E-34 284.2 52.4 548 17-617 225-836 (861)
15 4fdd_A Transportin-1; heat rep 100.0 1.8E-29 6.1E-34 281.8 52.6 537 6-617 79-681 (852)
16 1b3u_A Protein (protein phosph 100.0 2.2E-30 7.6E-35 278.0 38.6 514 14-615 47-567 (588)
17 1b3u_A Protein (protein phosph 100.0 4.8E-30 1.7E-34 275.4 36.4 514 13-618 8-531 (588)
18 1u6g_C TIP120 protein, CAND1; 100.0 9.3E-29 3.2E-33 286.8 45.3 525 20-617 53-661 (1230)
19 1qgr_A Protein (importin beta 100.0 2.9E-27 1E-31 266.0 51.1 547 17-617 218-853 (876)
20 1ibr_B P95, importin beta-1 su 99.9 7.6E-22 2.6E-26 204.8 37.0 402 54-529 4-460 (462)
21 2jdq_A Importin alpha-1 subuni 99.9 2.3E-19 8E-24 185.3 37.7 392 95-548 22-442 (450)
22 1wa5_C Importin alpha RE-expor 99.9 3.7E-18 1.3E-22 192.2 45.2 525 27-612 49-687 (960)
23 1wa5_B Importin alpha subunit; 99.9 3.1E-19 1.1E-23 188.0 32.2 393 95-548 89-509 (530)
24 2vgl_B AP-2 complex subunit be 99.9 3.9E-19 1.3E-23 188.7 32.3 437 20-547 54-530 (591)
25 2jdq_A Importin alpha-1 subuni 99.8 7.6E-19 2.6E-23 181.5 30.5 398 50-508 22-443 (450)
26 2x1g_F Cadmus; transport prote 99.8 7.6E-17 2.6E-21 182.5 43.5 534 15-618 85-746 (971)
27 4b8j_A Importin subunit alpha- 99.8 1.8E-17 6.3E-22 174.5 35.9 390 95-548 76-495 (528)
28 2vgl_B AP-2 complex subunit be 99.8 3.2E-17 1.1E-21 173.9 36.9 463 17-549 15-493 (591)
29 1wa5_B Importin alpha subunit; 99.8 5.9E-18 2E-22 178.2 30.7 402 47-509 86-511 (530)
30 2x19_B Importin-13; nuclear tr 99.8 4.3E-16 1.5E-20 176.4 44.6 534 15-617 103-737 (963)
31 4b8j_A Importin subunit alpha- 99.8 3E-17 1E-21 172.9 28.9 362 131-553 74-447 (528)
32 1w63_A Adapter-related protein 99.8 1.5E-15 5.2E-20 161.6 37.4 434 26-548 81-576 (618)
33 3now_A UNC-45 protein, SD10334 99.8 3.3E-15 1.1E-19 159.0 38.3 459 32-550 220-738 (810)
34 2z6g_A B-catenin; FULL-length, 99.8 1.3E-15 4.4E-20 166.5 35.2 462 15-552 153-666 (780)
35 3now_A UNC-45 protein, SD10334 99.7 6.7E-15 2.3E-19 156.6 37.0 450 26-550 258-783 (810)
36 2z6g_A B-catenin; FULL-length, 99.7 1.3E-15 4.4E-20 166.5 29.5 498 17-595 117-664 (780)
37 1jdh_A Beta-catenin; beta-cate 99.7 1.7E-15 5.9E-20 159.8 29.4 451 26-547 28-528 (529)
38 2z6h_A Catenin beta-1, beta-ca 99.7 7.2E-15 2.5E-19 158.2 34.7 457 14-551 16-529 (644)
39 1w63_A Adapter-related protein 99.7 3.2E-14 1.1E-18 151.4 38.6 438 15-596 34-492 (618)
40 2qk1_A Protein STU2; STU2P, XM 99.7 2.3E-16 7.9E-21 146.6 17.6 210 385-607 12-234 (249)
41 3ul1_B Importin subunit alpha- 99.7 1.4E-15 4.8E-20 158.5 25.5 360 133-552 59-433 (510)
42 3tpo_A Importin subunit alpha- 99.7 7.3E-15 2.5E-19 154.0 30.4 363 130-552 75-452 (529)
43 3ul1_B Importin subunit alpha- 99.7 2.2E-14 7.5E-19 149.4 32.3 386 17-508 59-478 (510)
44 3m1i_C Exportin-1; heat repeat 99.7 1.9E-13 6.7E-18 155.2 42.0 518 26-615 60-806 (1049)
45 2qk2_A LP04448P; mini spindles 99.7 1.5E-15 5.1E-20 141.9 18.2 216 385-618 11-230 (242)
46 3tpo_A Importin subunit alpha- 99.7 1E-13 3.5E-18 145.3 33.8 386 16-508 77-497 (529)
47 2vgl_A Adaptor protein complex 99.7 2E-12 6.8E-17 137.0 42.6 443 18-547 77-587 (621)
48 2z6h_A Catenin beta-1, beta-ca 99.7 1.9E-13 6.5E-18 147.1 34.3 375 94-531 15-405 (644)
49 3ibv_A Exportin-T; karyopherin 99.6 4.2E-12 1.4E-16 141.0 42.1 242 364-614 456-750 (980)
50 2qk2_A LP04448P; mini spindles 99.6 3.8E-14 1.3E-18 132.3 19.9 191 362-567 26-222 (242)
51 2vgl_A Adaptor protein complex 99.6 4.5E-11 1.5E-15 126.6 45.1 433 28-551 51-552 (621)
52 2qk1_A Protein STU2; STU2P, XM 99.6 2.3E-14 8E-19 133.0 16.9 195 362-564 27-234 (249)
53 1jdh_A Beta-catenin; beta-cate 99.6 4.6E-13 1.6E-17 141.1 29.0 384 92-538 16-415 (529)
54 4hat_C Exportin-1; heat repeat 99.6 8.4E-11 2.9E-15 130.7 45.7 474 32-574 116-699 (1023)
55 4hxt_A De novo protein OR329; 99.5 1.4E-11 4.9E-16 115.8 25.0 244 181-516 3-249 (252)
56 3l6x_A Catenin delta-1; cateni 99.4 2.4E-10 8.3E-15 117.7 31.3 362 126-548 42-475 (584)
57 1oyz_A Hypothetical protein YI 99.4 3.5E-11 1.2E-15 115.1 23.1 105 367-506 144-248 (280)
58 1xm9_A Plakophilin 1; armadill 99.4 7.9E-11 2.7E-15 120.6 26.7 375 133-548 4-448 (457)
59 4hxt_A De novo protein OR329; 99.4 1.3E-10 4.3E-15 109.3 24.9 239 132-465 3-244 (252)
60 3gjx_A Exportin-1; transport, 99.4 1.7E-08 5.7E-13 111.8 45.2 206 363-571 491-722 (1073)
61 4db8_A Armadillo-repeat protei 99.4 6.6E-11 2.2E-15 111.2 22.1 238 130-462 11-251 (252)
62 4db8_A Armadillo-repeat protei 99.4 2.8E-11 9.5E-16 113.8 18.4 235 47-291 11-251 (252)
63 3l6x_A Catenin delta-1; cateni 99.3 1.9E-09 6.3E-14 111.1 31.4 351 96-507 51-475 (584)
64 1oyz_A Hypothetical protein YI 99.3 8.1E-11 2.8E-15 112.5 19.8 103 367-504 175-278 (280)
65 1xm9_A Plakophilin 1; armadill 99.3 5.2E-10 1.8E-14 114.5 26.2 377 96-507 5-448 (457)
66 3ltm_A Alpha-REP4; protein eng 99.2 5.2E-10 1.8E-14 101.8 18.5 91 179-289 18-108 (211)
67 3ltj_A Alpharep-4; protein eng 99.2 9.1E-10 3.1E-14 99.3 19.2 88 391-506 109-196 (201)
68 3opb_A SWI5-dependent HO expre 99.2 5.1E-07 1.7E-11 94.6 41.1 357 130-550 295-729 (778)
69 3ltm_A Alpha-REP4; protein eng 99.2 9.8E-10 3.3E-14 100.0 18.3 122 130-289 18-139 (211)
70 2iw3_A Elongation factor 3A; a 99.2 3.4E-09 1.2E-13 114.7 25.2 276 235-576 28-307 (986)
71 3nmz_A APC variant protein; pr 99.2 8.1E-09 2.8E-13 103.9 25.6 311 145-511 96-453 (458)
72 3ltj_A Alpharep-4; protein eng 99.2 3.6E-09 1.2E-13 95.3 20.2 186 179-462 13-198 (201)
73 3nmz_A APC variant protein; pr 99.2 4.1E-08 1.4E-12 98.8 29.7 350 15-463 32-451 (458)
74 3opb_A SWI5-dependent HO expre 99.2 5.5E-07 1.9E-11 94.4 38.8 407 46-510 253-730 (778)
75 2iw3_A Elongation factor 3A; a 99.2 1.4E-07 4.6E-12 102.4 35.3 302 97-510 18-326 (986)
76 4db6_A Armadillo repeat protei 99.1 1.9E-09 6.5E-14 98.0 17.9 192 93-291 12-209 (210)
77 2db0_A 253AA long hypothetical 99.1 5.7E-08 2E-12 80.3 23.6 214 221-507 32-245 (253)
78 4db6_A Armadillo repeat protei 99.1 6.8E-09 2.3E-13 94.3 19.8 197 178-462 10-209 (210)
79 3a6p_A Exportin-5; exportin-5, 99.0 1.8E-06 6.1E-11 98.8 38.3 457 28-531 109-682 (1204)
80 4ady_A RPN2, 26S proteasome re 99.0 3.1E-06 1.1E-10 90.7 35.0 330 108-547 373-717 (963)
81 2db0_A 253AA long hypothetical 98.9 6.3E-07 2.1E-11 74.2 20.8 215 261-548 31-245 (253)
82 1xqr_A HSPBP1 protein; armadil 98.9 8.5E-07 2.9E-11 83.9 25.0 155 130-292 27-197 (296)
83 3nmw_A APC variant protein; AR 98.8 1.6E-07 5.4E-12 91.5 19.2 262 195-512 47-338 (354)
84 3tjz_B Coatomer subunit gamma; 98.8 1.7E-07 6E-12 90.0 18.8 312 99-505 31-350 (355)
85 1xqr_A HSPBP1 protein; armadil 98.8 6.9E-08 2.3E-12 91.5 15.6 175 368-550 57-239 (296)
86 3nmw_A APC variant protein; AR 98.8 1.7E-06 5.9E-11 84.2 23.9 249 32-292 48-335 (354)
87 4ady_A RPN2, 26S proteasome re 98.7 2.1E-05 7E-10 84.5 30.8 301 104-507 406-718 (963)
88 2of3_A ZYG-9; multifunctional 98.6 1.4E-06 4.8E-11 79.6 17.6 181 230-466 55-240 (266)
89 3tjz_B Coatomer subunit gamma; 98.6 1.5E-06 5E-11 83.6 18.7 290 84-457 59-348 (355)
90 3b2a_A TON_1937, putative unch 98.6 3.1E-05 1.1E-09 67.4 24.6 149 130-292 32-180 (265)
91 4ffb_C Protein STU2; tubulin f 98.6 1.7E-06 5.7E-11 82.0 17.2 180 362-554 20-217 (278)
92 2of3_A ZYG-9; multifunctional 98.5 8.9E-06 3.1E-10 74.3 19.9 205 393-617 50-259 (266)
93 3b2a_A TON_1937, putative unch 98.5 2.4E-05 8.2E-10 68.1 21.0 222 221-503 33-256 (265)
94 1vsy_5 Proteasome activator BL 98.5 5.8E-06 2E-10 91.1 19.6 426 46-551 461-968 (997)
95 4ffb_C Protein STU2; tubulin f 98.4 3.8E-06 1.3E-10 79.5 13.6 214 394-618 14-240 (278)
96 1te4_A Conserved protein MTH18 98.3 1.3E-07 4.3E-12 78.2 0.4 121 387-546 10-130 (131)
97 3oc3_A Helicase MOT1, MOT1; re 98.2 2.3E-05 7.9E-10 77.1 15.0 201 62-290 185-403 (800)
98 3oc3_A Helicase MOT1, MOT1; re 98.2 3.1E-05 1E-09 76.3 15.5 245 132-457 175-431 (800)
99 3grl_A General vesicular trans 98.2 0.0047 1.6E-07 63.3 31.8 203 90-292 18-242 (651)
100 1te4_A Conserved protein MTH18 98.1 3.3E-06 1.1E-10 69.6 6.4 87 391-505 44-130 (131)
101 3grl_A General vesicular trans 97.9 0.0068 2.3E-07 62.2 26.9 274 10-292 15-343 (651)
102 3l9t_A Putative uncharacterize 97.9 0.00028 9.5E-09 62.2 13.8 145 91-258 69-215 (240)
103 4gmo_A Putative uncharacterize 97.7 0.04 1.4E-06 59.0 30.9 152 131-292 35-215 (684)
104 4gmo_A Putative uncharacterize 97.7 0.06 2E-06 57.6 31.9 144 62-213 45-218 (684)
105 3tt9_A Plakophilin-2; cell adh 97.6 0.003 1E-07 56.9 16.5 174 132-315 9-204 (233)
106 3l9t_A Putative uncharacterize 97.5 0.0069 2.4E-07 53.4 16.5 172 16-216 41-214 (240)
107 3tt9_A Plakophilin-2; cell adh 97.4 0.019 6.4E-07 51.7 19.3 211 179-423 7-231 (233)
108 3u0r_A Apoptosis inhibitor 5; 97.4 0.12 4E-06 50.7 32.6 158 54-235 32-191 (507)
109 3u0r_A Apoptosis inhibitor 5; 97.4 0.12 4.1E-06 50.7 29.4 282 12-318 26-325 (507)
110 1vsy_5 Proteasome activator BL 97.3 0.022 7.6E-07 62.9 22.7 139 363-511 814-969 (997)
111 1lrv_A LRV, leucine-rich repea 97.3 0.00012 3.9E-09 66.7 3.2 186 100-458 57-242 (244)
112 1upk_A MO25 protein; transfera 96.9 0.25 8.7E-06 46.1 28.2 197 94-302 79-294 (341)
113 1lrv_A LRV, leucine-rich repea 96.3 0.001 3.5E-08 60.4 1.3 186 138-504 57-242 (244)
114 3gs3_A Symplekin, LD45768P; he 96.3 0.63 2.1E-05 42.2 23.4 170 87-257 47-250 (257)
115 4atg_A TAF6; transcription, TF 96.1 0.28 9.5E-06 42.2 15.5 127 374-506 28-160 (196)
116 3o2t_A Symplekin; heat repeat, 96.1 1.1 3.8E-05 43.2 23.4 175 384-571 58-272 (386)
117 1vsy_4 Proteasome activator BL 96.0 2.2 7.7E-05 45.8 33.6 122 85-212 327-458 (799)
118 1upk_A MO25 protein; transfera 96.0 1.1 3.7E-05 41.9 19.7 184 62-251 89-284 (341)
119 3gs3_A Symplekin, LD45768P; he 95.4 1.5 5E-05 39.8 24.0 129 109-249 31-172 (257)
120 1lsh_A Lipovitellin (LV-1N, LV 95.0 3.7 0.00013 46.2 23.6 157 105-292 407-577 (1056)
121 4atg_A TAF6; transcription, TF 94.4 1.1 3.9E-05 38.4 13.7 129 426-573 8-141 (196)
122 3ldz_A STAM-1, signal transduc 94.4 0.57 2E-05 38.0 11.4 79 476-554 39-119 (140)
123 3o2t_A Symplekin; heat repeat, 94.0 4.7 0.00016 38.8 24.0 177 87-264 57-270 (386)
124 1vsy_4 Proteasome activator BL 93.6 9.3 0.00032 41.1 39.4 365 85-509 16-456 (799)
125 1ho8_A Vacuolar ATP synthase s 93.4 6.7 0.00023 38.8 26.1 56 406-462 419-476 (480)
126 1lsh_A Lipovitellin (LV-1N, LV 93.2 1.9 6.5E-05 48.5 16.7 174 48-252 391-578 (1056)
127 3fga_B Serine/threonine-protei 93.0 6.8 0.00023 37.9 21.6 235 17-261 131-377 (403)
128 1x5b_A Signal transducing adap 92.2 1.1 3.8E-05 37.4 10.0 78 477-554 50-130 (163)
129 3g2s_A C-terminal fragment of 91.6 3.3 0.00011 33.9 11.9 78 476-553 45-130 (149)
130 1mhq_A ADP-ribosylation factor 91.1 2.1 7.1E-05 35.1 10.2 77 477-553 36-120 (148)
131 2npp_B PP2A, B subunit, serine 91.1 13 0.00043 36.7 20.8 228 16-258 163-407 (449)
132 1juq_A ADP-ribosylation factor 90.7 3.1 0.00011 35.0 11.2 96 406-512 31-132 (171)
133 1juq_A ADP-ribosylation factor 90.6 3.5 0.00012 34.7 11.5 77 477-553 48-132 (171)
134 3dad_A FH1/FH2 domain-containi 90.6 11 0.00038 35.3 15.7 150 396-553 125-290 (339)
135 1w9c_A CRM1 protein, exportin 90.6 11 0.00038 35.2 16.7 142 409-551 46-198 (321)
136 3jxy_A Alkylpurine DNA glycosy 89.9 10 0.00034 33.8 14.7 160 32-219 43-205 (232)
137 2fv2_A RCD1 required for cell 89.3 5.2 0.00018 35.7 11.7 186 15-210 3-225 (268)
138 3ldz_A STAM-1, signal transduc 88.6 6.5 0.00022 31.7 11.3 72 388-466 41-118 (140)
139 3dad_A FH1/FH2 domain-containi 88.1 17 0.00058 34.0 17.3 147 138-292 125-287 (339)
140 3g2s_A C-terminal fragment of 86.0 2.7 9.2E-05 34.4 7.5 81 127-213 44-130 (149)
141 1mhq_A ADP-ribosylation factor 85.7 2.9 9.9E-05 34.2 7.6 78 129-212 36-119 (148)
142 2npp_B PP2A, B subunit, serine 85.5 29 0.001 34.1 22.8 255 193-508 130-399 (449)
143 1x5b_A Signal transducing adap 83.8 15 0.00053 30.4 11.4 95 406-512 33-129 (163)
144 3zyq_A Hepatocyte growth facto 83.4 15 0.00052 32.5 11.9 78 477-554 43-123 (226)
145 3fga_B Serine/threonine-protei 82.7 36 0.0012 32.9 25.9 272 193-521 97-379 (403)
146 3jxy_A Alkylpurine DNA glycosy 81.6 13 0.00044 33.1 11.0 155 99-287 67-223 (232)
147 1elk_A Target of MYB1; superhe 81.2 20 0.00067 29.5 11.1 78 476-553 50-134 (157)
148 2b6c_A Hypothetical protein EF 79.8 31 0.0011 30.3 14.3 157 32-217 37-196 (220)
149 1dvp_A HRS, hepatocyte growth 79.3 15 0.00053 32.3 10.5 79 476-554 39-120 (220)
150 2b6c_A Hypothetical protein EF 79.0 33 0.0011 30.1 13.1 139 97-260 59-198 (220)
151 3qml_C Protein SLS1, nucleotid 78.0 31 0.0011 31.7 11.9 151 128-290 19-188 (315)
152 4flb_A Regulation of nuclear P 78.0 24 0.00082 27.9 11.0 104 430-547 5-110 (132)
153 3s4w_B Protein FACD2, fanconi 77.3 91 0.0031 35.4 17.8 223 17-251 312-550 (1323)
154 1elk_A Target of MYB1; superhe 75.7 26 0.00088 28.8 10.1 75 388-466 52-134 (157)
155 1vdy_A Hypothetical protein (R 73.9 18 0.00061 29.0 8.3 75 383-460 43-128 (140)
156 1w9c_A CRM1 protein, exportin 73.5 59 0.002 30.3 23.1 139 371-509 94-249 (321)
157 3zyq_A Hepatocyte growth facto 70.4 40 0.0014 29.7 10.8 95 406-512 26-122 (226)
158 3ebb_A Phospholipase A2-activa 69.4 72 0.0025 29.6 14.1 99 406-508 162-263 (304)
159 4fu3_A Regulation of nuclear P 68.8 39 0.0013 26.8 9.6 73 433-519 7-79 (135)
160 3d9j_A RNA-binding protein 16; 66.0 51 0.0017 26.6 10.2 102 438-548 10-118 (145)
161 2fv2_A RCD1 required for cell 65.9 50 0.0017 29.5 10.1 99 193-292 115-225 (268)
162 1vdy_A Hypothetical protein (R 64.4 29 0.00098 27.8 7.6 73 178-250 47-130 (140)
163 1dvp_A HRS, hepatocyte growth 61.4 69 0.0024 28.0 10.5 77 432-512 41-119 (220)
164 1t06_A Hypothetical protein; s 58.6 45 0.0016 29.6 8.9 74 389-465 108-183 (235)
165 1sz9_A PCF11 protein; RNA poly 58.6 70 0.0024 25.7 12.3 77 474-550 38-115 (144)
166 3rru_A TOM1L1 protein; structu 57.6 48 0.0016 27.0 8.1 79 476-554 50-135 (152)
167 2jak_A Serine/threonine-protei 54.4 1.6E+02 0.0053 28.4 14.4 199 406-618 143-350 (392)
168 3ut4_A CTHE_2751, putative unc 49.5 95 0.0032 24.5 11.3 101 85-207 23-128 (134)
169 1ho8_A Vacuolar ATP synthase s 48.6 2.1E+02 0.0073 28.3 31.4 58 445-508 417-476 (480)
170 3eg5_B Protein diaphanous homo 45.7 1.7E+02 0.0057 28.2 11.2 58 145-211 134-193 (383)
171 4flb_A Regulation of nuclear P 45.3 1.1E+02 0.0037 24.0 11.3 90 477-576 6-95 (132)
172 2km4_A Regulator of TY1 transp 44.7 1.2E+02 0.0041 24.2 15.0 124 433-573 6-136 (142)
173 3rru_A TOM1L1 protein; structu 40.6 45 0.0015 27.2 5.3 75 389-466 53-134 (152)
174 1t06_A Hypothetical protein; s 40.6 1.9E+02 0.0064 25.5 10.0 75 44-124 104-182 (235)
175 1sz9_A PCF11 protein; RNA poly 37.4 1.6E+02 0.0054 23.6 12.0 77 127-210 39-115 (144)
176 2jak_A Serine/threonine-protei 37.2 2.9E+02 0.0098 26.6 16.1 178 17-204 176-362 (392)
177 4fu3_A Regulation of nuclear P 27.8 2.2E+02 0.0074 22.3 8.6 63 481-552 9-71 (135)
178 3ebb_A Phospholipase A2-activa 27.3 3.7E+02 0.013 24.7 15.9 152 390-549 104-263 (304)
179 3tj1_A RNA polymerase I-specif 25.4 5.8E+02 0.02 26.4 21.1 183 32-228 74-261 (649)
180 3eg5_B Protein diaphanous homo 23.6 2.9E+02 0.0098 26.5 8.7 100 406-510 134-248 (383)
181 1zoq_C CREB-binding protein, i 20.5 1.3E+02 0.0045 18.2 3.3 36 16-54 2-37 (47)
182 2rg8_A Programmed cell death p 20.2 3.6E+02 0.012 22.1 8.6 102 387-507 10-114 (165)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.6e-63 Score=556.73 Aligned_cols=581 Identities=47% Similarity=0.854 Sum_probs=522.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh
Q 006912 4 SVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (626)
Q Consensus 4 ~~~~~~~~~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~ 83 (626)
||+|+|+++.++++.++|.+++|||++ +|++|+++|++++++|+++.++..++....+.++.+|++|++.|||.+.++|
T Consensus 2 ~~~w~~~~~~~~~l~~~l~~~~s~d~~-~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w 80 (852)
T 4fdd_A 2 EYEWKPDEQGLQQILQLLKESQSPDTT-IQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF 80 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTCSCHH-HHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSG
T ss_pred CCCCCCChhhHHHHHHHHHHHhCcCHH-HHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcc
Confidence 689999999999999999999999999 9999999999999999999999999974347889999999999999999999
Q ss_pred ccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhch
Q 006912 84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (626)
Q Consensus 84 ~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~ 163 (626)
..++++.+..||+.+++.|.++++.+|+.++.+++.|++.++++.||++++.+.+.++++++.+|++++.+|+.+++..+
T Consensus 81 ~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~ 160 (852)
T 4fdd_A 81 QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA 160 (852)
T ss_dssp GGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999988
Q ss_pred hccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006912 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (626)
Q Consensus 164 ~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 243 (626)
..+..... ......++|.++++++++++.+|..|++++..++...+..+.+.++.+++.++..++++++++|..+++
T Consensus 161 ~~~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~ 237 (852)
T 4fdd_A 161 EILDSDVL---DRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCR 237 (852)
T ss_dssp THHHHCSS---SSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHhchhhh---cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 76432110 134688999999999999999999999999988877777777778889999999999999999999999
Q ss_pred HHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhh
Q 006912 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (626)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~ 323 (626)
+|..+++..++.+.+|++.+++.++..+.+.++++|..|+++|..+++.....+.+++++..++|.++..|.+.++|.+|
T Consensus 238 ~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~ 317 (852)
T 4fdd_A 238 ALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIIL 317 (852)
T ss_dssp HHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHH
Confidence 99999999999999999999999999999999999999999999999875555667899999999999999998888887
Q ss_pred hhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCC
Q 006912 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGD 403 (626)
Q Consensus 324 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 403 (626)
++.|.++ |+++||....|++|++|..+++.++...|+.+++.+++.+.+.+++++
T Consensus 318 ~~~d~~e------------------------d~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~- 372 (852)
T 4fdd_A 318 LKGDVEG------------------------GSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE- 372 (852)
T ss_dssp HHC------------------------------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSS-
T ss_pred hcCCccc------------------------ccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCC-
Confidence 7544221 111122236799999999999999999999999999999999999988
Q ss_pred CChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHH
Q 006912 404 EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (626)
Q Consensus 404 ~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 483 (626)
|++|++|+.++|.+++++.+.+.++++.++|.++..+.|+++.||.+|+|++|+++++++.. ....++..+++.
T Consensus 373 --~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~~~~ll~~ 446 (852)
T 4fdd_A 373 --WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ----PPDTYLKPLMTE 446 (852)
T ss_dssp --HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS----CTTTTHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc----hHHHHHHHHHHH
Confidence 99999999999999999988778999999999999999999999999999999999988753 357889999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhh
Q 006912 484 LLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDI 563 (626)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~ 563 (626)
+++.+.|+++.||..|+++|+.+++.+++.+.||++.+++.|...++..+.+....++++++.++..+|..+.+++|++.
T Consensus 447 L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~ 526 (852)
T 4fdd_A 447 LLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQM 526 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHH
Confidence 99999999999999999999999999998899999999999999999888888888999999999999988877789999
Q ss_pred hhHHHHHHHhcCCCCCCccchHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Q 006912 564 LMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQ 619 (626)
Q Consensus 564 l~~~l~~~~~~~~~~~~~~~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~~l~~~~ 619 (626)
++|.+++.|....++++++..+++|++.+++.+|..|.||++++++.+++++.+..
T Consensus 527 l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l 582 (852)
T 4fdd_A 527 LMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTL 582 (852)
T ss_dssp HHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988776677777899999999999999999999999999999988764
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=8.4e-47 Score=424.39 Aligned_cols=549 Identities=18% Similarity=0.296 Sum_probs=465.5
Q ss_pred HHHHHHHHhh-cCCCCHHHHHHHHHHHHHHhcC--CChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH-----------
Q 006912 15 NEICRLLEQQ-ISPSSTADKSQIWQQLQQYSQF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR----------- 80 (626)
Q Consensus 15 ~~l~~~l~~~-~s~d~~~~r~~a~~~L~~~~~~--p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~----------- 80 (626)
+++.++|..+ +|||++ .|++|+++|++++++ |+++..|.+++.+ .+.++++|++|+++||+.+.
T Consensus 4 ~~l~~~L~~~~~s~d~~-~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~-~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~ 81 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQN-IRLTSETQLKKLSNDNFLQFAGLSSQVLID-ENTKLEGRILAALTLKNELVSKDSVKTQQFA 81 (861)
T ss_dssp HHHHHHHHHHHHCSSHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHTC-TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHH
T ss_pred HHHHHHHHHcccCcCHH-HHHHHHHHHHHHHhhCHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHhhccCcChHHHHHHH
Confidence 6889999999 999999 999999999998774 8999999999974 24689999999999999974
Q ss_pred Hhhcc-CChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc-CchHHHHHHHHHHhccC-ChhHHhHHHHHHHH
Q 006912 81 TAYKS-MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN-DINHMEGAMDALSK 157 (626)
Q Consensus 81 ~~~~~-l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~-~~~~~ll~~l~~~l~~~-~~~~r~~~l~~l~~ 157 (626)
++|.. ++++.+..||+.+++.+.++++.+|+.++.+++.|++.+++ +.||++++.+.+.+.++ ++.+|++++.+++.
T Consensus 82 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~ 161 (861)
T 2bpt_A 82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44786 99999999999999999999999999999999999999866 69999999999999998 99999999999999
Q ss_pred HhhhchhccccCCCCCccchhhhhHHHHHHhcCCC--ChHHHHHHHHHHHHHHhccchHHHH--hHHHHHHHHHHhcCCC
Q 006912 158 ICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLLSNDP 233 (626)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~ 233 (626)
+++..+.... .+......+++.+...+.++ +..||..+++++..++.+.+..+.. ....+++.+...+.++
T Consensus 162 l~~~~~~~~~-----~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 236 (861)
T 2bpt_A 162 MCESADPQSQ-----ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE 236 (861)
T ss_dssp HHHTSSTTSS-----TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS
T ss_pred HHHcCChhhh-----HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCC
Confidence 9987654321 12355788999999999987 8899999999999988776543321 1134577777888888
Q ss_pred CHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhccCCChHHHHHHHhHHHHhhccCC---------------cch
Q 006912 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL---------------PHE 297 (626)
Q Consensus 234 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~---------------~~~ 297 (626)
++++|..++++|..+++.+++.+.+++. .+++.+...+.+.++++|..++++|..+++... ..+
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHH
Confidence 9999999999999999999999999999 999999999999999999999999999887521 112
Q ss_pred hHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHH
Q 006912 298 NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV 377 (626)
Q Consensus 298 ~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~ 377 (626)
...+++..++|.++..+...++ ++ +.+.|++|..+..++..
T Consensus 317 ~~~~~~~~il~~ll~~l~~~~~-----------------------------------d~----~d~~~~~r~~a~~~L~~ 357 (861)
T 2bpt_A 317 FALSSIKDVVPNLLNLLTRQNE-----------------------------------DP----EDDDWNVSMSAGACLQL 357 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC-----------------------------------C-----CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc-----------------------------------cc----ccccCcHHHHHHHHHHH
Confidence 3456778888888877753211 00 11247899999999999
Q ss_pred HHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc-cchhhhHHHHHHHHhhhcCCCchHHHHHHHHH
Q 006912 378 LSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWT 456 (626)
Q Consensus 378 l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~ 456 (626)
++..+|+.+++.+++.+.+.+++++ |+.|++++.+++.+++++. +.+.++++.+++.++..+.|+++.||.+++++
T Consensus 358 l~~~~~~~~~~~l~~~l~~~l~~~~---~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~ 434 (861)
T 2bpt_A 358 FAQNCGNHILEPVLEFVEQNITADN---WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWC 434 (861)
T ss_dssp HHHHHGGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHccHhHHHHHHHHHHHHcCCCC---hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 9999998889999999999999888 9999999999999999885 66778999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc----ccccchHHHHHHHHHHHHhhh
Q 006912 457 LSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA----EELAPRLEIILQHLMMAFGKY 532 (626)
Q Consensus 457 l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~----~~~~~~l~~i~~~l~~~l~~~ 532 (626)
+|+++++++... ....++..+++.+++.++|+ +.||..|++++..+++.++ ..+.||++.+++.+...+...
T Consensus 435 l~~l~~~~~~~~---~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 510 (861)
T 2bpt_A 435 IGRIADSVAESI---DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510 (861)
T ss_dssp HHHHHHHHGGGS---CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhhhhc---CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc
Confidence 999999886421 13578999999999999886 9999999999999999986 568899999999999999854
Q ss_pred h--HHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcC--------CCCC----Ccc-chHHHHHHHHHHHhc
Q 006912 533 Q--RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL--------PNSD----KDL-FPLLECFTSIAQALG 597 (626)
Q Consensus 533 ~--~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~~~~----~~~-~~~l~~~~~l~~~~g 597 (626)
+ ..++..++++++.++...+.... +|+..++|.+++.+... ++++ ..+ ..++++++.+++.+|
T Consensus 511 d~~~~vr~~a~~al~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 588 (861)
T 2bpt_A 511 DNEFNARASAFSALTTMVEYATDTVA--ETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP 588 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHCCGGGH--HHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred CcchHHHHHHHHHHHHHHHHcchhhH--HHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 56777999999999999988764 69999999999888742 1001 112 378899999999999
Q ss_pred cccccchHHHHHHHHHHHHHH
Q 006912 598 AGFTQFAQPVFQRCINIIQTQ 618 (626)
Q Consensus 598 ~~f~~~~~~i~~~l~~~l~~~ 618 (626)
..+.||++.+++.+++.+++.
T Consensus 589 ~~~~~~~~~l~~~l~~~l~~~ 609 (861)
T 2bpt_A 589 SSVEPVADMLMGLFFRLLEKK 609 (861)
T ss_dssp GGTGGGHHHHHHHHHHHHHST
T ss_pred hhhHHHHHHHHHHHHHHHccC
Confidence 999999999999999998765
No 3
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=2.1e-47 Score=430.14 Aligned_cols=565 Identities=13% Similarity=0.181 Sum_probs=441.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhc------cCC
Q 006912 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK------SMS 87 (626)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~------~l~ 87 (626)
.+++.++|.+++|||++ .| |+++|++++++|+|+..|.+++.+ .+.+.++|++|++.|||.+.++|. .++
T Consensus 4 ~~~l~~~L~~~~spd~~-~r--Ae~~L~~~~~~p~~~~~L~~il~~-~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~ 79 (960)
T 1wa5_C 4 LETVAKFLAESVIASTA-KT--SERNLRQLETQDGFGLTLLHVIAS-TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLP 79 (960)
T ss_dssp HHHHHHHHHHTTSGGGH-HH--HHHHHHHHHTSTTHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSC
T ss_pred HHHHHHHHHHhcCCCHH-HH--HHHHHHHhhcCCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCC
Confidence 56899999999999998 88 999999999999999999999974 356889999999999999999998 789
Q ss_pred hhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccc
Q 006912 88 PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (626)
Q Consensus 88 ~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~ 167 (626)
++.+..||+.+++.+.+++..+|+.++.+++.|++.++++.||++++.+.+.++++++..+++++.++..+++.....+.
T Consensus 80 ~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~ 159 (960)
T 1wa5_C 80 ANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFR 159 (960)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999987779999999999999999998899999999999999998889999999999999987643211
Q ss_pred cC-CCCCccchhhhhHHHHHH-------hcCCCCh---------HHHHHHHHHHHHHH-hccchHHHHhHHHHHHHHHHh
Q 006912 168 SD-VPGLAECPINIFLPRLLQ-------FFQSPHT---------SLRKLSLGSVNQFI-MLMPSALFVSMDQYLQGLFLL 229 (626)
Q Consensus 168 ~~-~~~~~~~~~~~il~~l~~-------~l~~~~~---------~vr~~al~~l~~~~-~~~~~~~~~~~~~~l~~l~~~ 229 (626)
+. ...-+...+..+++.+++ .++++.. .++..+++++..+. ...|..+.+++..+++.+.+.
T Consensus 160 ~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (960)
T 1wa5_C 160 SDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKY 239 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 10 000000112333333332 3454321 23344667776655 345777777788888877765
Q ss_pred cCC------C--C-------HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcc-----CCChHHHHHHHhHHHHh
Q 006912 230 SND------P--S-------AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK-----DTDDDVALEACEFWHSY 289 (626)
Q Consensus 230 ~~~------~--~-------~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~v~~~a~~~l~~l 289 (626)
+.. . + +.+++.+++++..+.+.+++.+.+|++.+++.++..+. ..++.++..+++||.++
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~ 319 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV 319 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence 432 0 1 35789999999999999999999999999998887653 45678999999999999
Q ss_pred hccCCcchhHH--hhhhhhH-HHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCcccccccc
Q 006912 290 FEAQLPHENLK--EFLPRLV-PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (626)
Q Consensus 290 ~~~~~~~~~~~--~~l~~li-~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (626)
++.+.....++ +++..++ +.+++.|..+++|.+.|++|++| +++ ++. +..+.|+
T Consensus 320 ~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e-------~i~-----------~d~-----e~~d~~s 376 (960)
T 1wa5_C 320 TRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIE-------YIR-----------RDL-----EGSDTDT 376 (960)
T ss_dssp HTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHH-------HHH-----------HHH-----HC----C
T ss_pred hCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHH-------HHH-----------hcc-----CcccccC
Confidence 88644445554 8899999 78899999999888888766543 111 001 1123468
Q ss_pred HHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhc------CCCCCChhHHHHHHHHHHHHHccCc---cchhh-----hHH
Q 006912 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS------ASGDEAWKDREAAVLALGAIAEGCI---KGLYP-----HLS 432 (626)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~------~~~~~~~~~r~aal~~l~~l~~~~~---~~~~~-----~l~ 432 (626)
.|.+|..+++.++..+|+.+++.+++++.+.++ +++ |+.|+||+.++|.++++.. ..... .+.
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~---w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~ 453 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKN---WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV 453 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----C---HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred cHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchh---HHHHHHHHHHHHHHHHHhccccCCcccccccccHH
Confidence 999999999999999998888899999888887 556 9999999999999987531 11111 333
Q ss_pred HH-HHHHhhhcCCC---chHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 006912 433 EI-VAFLIPLLDDK---FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (626)
Q Consensus 433 ~l-~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (626)
.+ ...+++.+.|+ +|.||.+|+|++|++++++. +.++.++++.++..+.|+++.||.+|+.||.++++
T Consensus 454 ~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--------~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--------KAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--------HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 32 34566667777 99999999999999999763 46899999999999999899999999999999997
Q ss_pred H-----------hcccccchHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHH
Q 006912 509 E-----------AAEELAPRLEIILQHLMMAFGKYQ-----RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKW 572 (626)
Q Consensus 509 ~-----------~~~~~~~~l~~i~~~l~~~l~~~~-----~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~ 572 (626)
. .++.+.||++.+++.|..+++... ......++++++.++...+.++. +|+..+++.+...+
T Consensus 526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~--p~~~~l~~~L~~~l 603 (960)
T 1wa5_C 526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQ--PLFPQLLAQFIEIV 603 (960)
T ss_dssp CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTG--GGHHHHHHHHHHHH
T ss_pred cccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHH
Confidence 4 245689999999999999998851 22346889999999999998876 69999999999888
Q ss_pred hcCCCC--CCcc-chHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHH
Q 006912 573 QQLPNS--DKDL-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQ 618 (626)
Q Consensus 573 ~~~~~~--~~~~-~~~l~~~~~l~~~~g~-~f~~~~~~i~~~l~~~l~~~ 618 (626)
.....+ ++.. ..+++|++.++++.+. .+.++.+.++|.+..+|++.
T Consensus 604 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~ 653 (960)
T 1wa5_C 604 TIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED 653 (960)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhh
Confidence 764222 2223 3689999999998664 67789999999999888764
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=7.8e-46 Score=417.33 Aligned_cols=545 Identities=22% Similarity=0.334 Sum_probs=457.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--CChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH-----------HHh
Q 006912 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RTA 82 (626)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~--p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i-----------~~~ 82 (626)
++.++|..+.|||++ +|++|+++|++++++ |+++..|++++.+ .+.++.+|+.|+++||+.+ .++
T Consensus 2 ~l~~~L~~~~s~d~~-~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 2 ELITILEKTVSPDRL-ELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CHHHHHHGGGCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHH-HHHHHHHHHHHHHhcChhhHHHHHHHHHhC-CCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 578999999999999 999999999999875 8999999999974 2468999999999999986 467
Q ss_pred hccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc-CchHHHHHHHHHHhccC--ChhHHhHHHHHHHHHh
Q 006912 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN--DINHMEGAMDALSKIC 159 (626)
Q Consensus 83 ~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~-~~~~~ll~~l~~~l~~~--~~~~r~~~l~~l~~l~ 159 (626)
|..++++.+..||+.+++.+.++++.+ +.++.+++.+++.+++ ..|+++++.+.+.+.++ ++.+|+.++.+++.++
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 158 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999998887778 9999999999998755 89999999999999998 8999999999999999
Q ss_pred hhchhccccCCCCCccchhhhhHHHHHHhcCCC--ChHHHHHHHHHHHHHHhccchHHHHh--HHHHHHHHHHhcCCCCH
Q 006912 160 EDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVS--MDQYLQGLFLLSNDPSA 235 (626)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~ 235 (626)
+...... +......+++.+.+.+.++ +..+|..|++++..++.+.+..+... ...+++.+...+.++++
T Consensus 159 ~~~~~~~-------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 231 (876)
T 1qgr_A 159 QDIDPEQ-------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (876)
T ss_dssp HHSCHHH-------HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HhcCHhh-------HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH
Confidence 8763221 1245688999999999887 68999999999999987765433211 12357778888888899
Q ss_pred HHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhccCCChHHHHHHHhHHHHhhccC-------------------Cc
Q 006912 236 EVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-------------------LP 295 (626)
Q Consensus 236 ~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~-------------------~~ 295 (626)
++|..++++|..+++.+++.+.+++. .+++.++..+.+.++++|..++++|..+++.. ..
T Consensus 232 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (876)
T 1qgr_A 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (876)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchh
Confidence 99999999999999999999999999 99999999988999999999999999987641 11
Q ss_pred chhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHH
Q 006912 296 HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (626)
Q Consensus 296 ~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l 375 (626)
....++++..+++.++..+...++ + + ++..|++|.+|..++
T Consensus 312 ~~~~~~~~~~ll~~ll~~l~~~~~-----------------------------------d-~---~~~~~~~r~~a~~~l 352 (876)
T 1qgr_A 312 KFYAKGALQYLVPILTQTLTKQDE-----------------------------------N-D---DDDDWNPCKAAGVCL 352 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCS-----------------------------------S-C---CTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHhhcccc-----------------------------------c-c---cccccHHHHHHHHHH
Confidence 233445667778877776643211 0 0 123589999999999
Q ss_pred HHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc-cchhhhHHHHHHHHhhhcCCCchHHHHHHH
Q 006912 376 DVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISC 454 (626)
Q Consensus 376 ~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~ 454 (626)
..++..+|+.+++.+++.+...+++++ |++|++++.+++.+++++. +.+.++++.++|.++..+.|+++.||.+|+
T Consensus 353 ~~l~~~~~~~~~~~~l~~l~~~l~~~~---~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~ 429 (876)
T 1qgr_A 353 MLLATCCEDDIVPHVLPFIKEHIKNPD---WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429 (876)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHCcHhhHHHHHHHHHHHccCCC---hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999998889999999999999988 9999999999999999886 556788999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc--------------ccccchHHH
Q 006912 455 WTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA--------------EELAPRLEI 520 (626)
Q Consensus 455 ~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~--------------~~~~~~l~~ 520 (626)
++++++++.++... ...+++..+++.++..+.++ +.||..|+++|..+++.++ +.+.||++.
T Consensus 430 ~~l~~~~~~~~~~~---~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (876)
T 1qgr_A 430 WTVGRICELLPEAA---INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFEL 505 (876)
T ss_dssp HHHHHHHHHCGGGT---SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHH
T ss_pred HHHHHHHHhCchhc---ccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHH
Confidence 99999999876420 14678999999999999885 9999999999999999875 348899999
Q ss_pred HHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcC--------CCCCCc----c-ch
Q 006912 521 ILQHLMMAFGKYQ---RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL--------PNSDKD----L-FP 584 (626)
Q Consensus 521 i~~~l~~~l~~~~---~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~----~-~~ 584 (626)
+++.|...+...+ ...+..++++++.++..+|.+.. +|+..+++.++..|... +++++. + ..
T Consensus 506 il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~ 583 (876)
T 1qgr_A 506 IVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCY--PAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSL 583 (876)
T ss_dssp HHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTH--HHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhH--HHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHH
Confidence 9999999998753 34556899999999999997654 69999999999888752 223322 1 36
Q ss_pred HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHH
Q 006912 585 LLECFTSIAQALG-AGFTQFAQPVFQRCINIIQTQ 618 (626)
Q Consensus 585 ~l~~~~~l~~~~g-~~f~~~~~~i~~~l~~~l~~~ 618 (626)
++.+++.++..+| ..|.||++.+++.+++.+++.
T Consensus 584 ~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~ 618 (876)
T 1qgr_A 584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQST 618 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhc
Confidence 7899999999999 899999999999999998875
No 5
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=3.3e-44 Score=407.34 Aligned_cols=571 Identities=14% Similarity=0.237 Sum_probs=434.2
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhH
Q 006912 11 EQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN 90 (626)
Q Consensus 11 ~~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~ 90 (626)
+..++++.+++..+++|+++ .|++|+++|++++++|++|..+.++|.. +.++++|++|++.||+.|.++|..++++.
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~-~r~~Ae~~L~~~~~~p~~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~ 88 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDH 88 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHSTTGGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred cccHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHhCchHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence 45678999999999999999 9999999999999999999999999976 77999999999999999999999999999
Q ss_pred HHHHHHhHhhhhhCC---------cHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhh
Q 006912 91 QQYIKSELLPCLGAA---------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (626)
Q Consensus 91 ~~~i~~~L~~~l~~~---------~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~ 161 (626)
+..||+.++..+.+. ++.+|+.++.+++.|++.++++.||++++.+.+.++ .++..++.++.+|..+++.
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~ee 167 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEE 167 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHH
Confidence 999999999988642 378999999999999999989999999999999997 5666788999999999987
Q ss_pred chhccccCCC--------CCccchhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHH----
Q 006912 162 IPQVLDSDVP--------GLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL---- 228 (626)
Q Consensus 162 ~~~~~~~~~~--------~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~---- 228 (626)
+.+.-..... ..+......+++.+.+++++ ++..++..+++|+..++.+.|....-. ..+++.+++
T Consensus 168 v~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~-~~ll~~l~~~~l~ 246 (1049)
T 3m1i_C 168 VFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYE-TNILELLSTKFMT 246 (1049)
T ss_dssp HHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS-SSHHHHHHTHHHH
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhh-hhHHHHHHHHhCC
Confidence 6642110000 00112245556666666654 457899999999999988877322100 011111111
Q ss_pred --------------h--------------------------------------------cCCCCHHHHHHHHHHHHHHHh
Q 006912 229 --------------L--------------------------------------------SNDPSAEVRKLVCAAFNLLIE 250 (626)
Q Consensus 229 --------------~--------------------------------------------~~~~~~~~~~~~~~~l~~l~~ 250 (626)
. ..+.+.++....++.+..+.+
T Consensus 247 ~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~ 326 (1049)
T 3m1i_C 247 SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLA 326 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 0 011223333444444444433
Q ss_pred hCcc------chhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhc----cCCcchhHHhhhhhhHHHHhhhcccCchh
Q 006912 251 VRPS------FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE----AQLPHENLKEFLPRLVPVLLSNMIYADDD 320 (626)
Q Consensus 251 ~~~~------~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~----~~~~~~~~~~~l~~li~~l~~~l~~~~~d 320 (626)
.+.. .+.+++..++++++......+++++..+++||..+++ .+......++++.++++.++..|...+ |
T Consensus 327 ~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~e-d 405 (1049)
T 3m1i_C 327 RNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE-E 405 (1049)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCT-T
T ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCc-c
Confidence 2221 1345666777888887777888999999999999988 445667788999999999999997743 3
Q ss_pred hhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcC
Q 006912 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA 400 (626)
Q Consensus 321 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~ 400 (626)
.+|.++++.| +++. .. ++.+.|+.|+++..+|..++...|..+++.+.+.+.+.+++
T Consensus 406 ~~~~~dd~~e-------~~r~-----------~~-----~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~ 462 (1049)
T 3m1i_C 406 VLVVENDEGE-------IVRE-----------FV-----KESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDG 462 (1049)
T ss_dssp CCEEECTTSC-------EEEC-----------SS-----CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTS
T ss_pred eeeeeCCCCc-------chHh-----------hh-----ccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCC
Confidence 3332222111 1210 01 11234678999999999999888878888999999888864
Q ss_pred CCCCChhHHHHHHHHHHHHHccCccchh-hhHHHHHHHHhhhcC-----CCchHHHHHHHHHHHHHHHHHhhhcCCCchh
Q 006912 401 SGDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (626)
Q Consensus 401 ~~~~~~~~r~aal~~l~~l~~~~~~~~~-~~l~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 474 (626)
+ ..+|+.|+++++++|.+++++.+... ++++.+++.+..... |+++.||..++|++|++++++.. +.
T Consensus 463 ~-~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~------~~ 535 (1049)
T 3m1i_C 463 S-EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA------HW 535 (1049)
T ss_dssp S-SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH------CH
T ss_pred C-CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh------HH
Confidence 2 12399999999999999988764433 457888887766443 46788888899999999999874 46
Q ss_pred hhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhccccc--------chHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 006912 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELA--------PRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (626)
Q Consensus 475 ~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~--------~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~ 546 (626)
.++..+++.++..+.++++.|+.+||.||.++++.|+..+. ||++.++..+..++.+.+......++++++.
T Consensus 536 ~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ 615 (1049)
T 3m1i_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999987664 9999999999999988777777889999999
Q ss_pred HHHHhccccCChhhhhhhhHHHHHHHhcCCC------C---CC----ccchHHHHHHHHHHHhccccccchHHHHHHHHH
Q 006912 547 LADAVGFELNQPVYLDILMPPLIAKWQQLPN------S---DK----DLFPLLECFTSIAQALGAGFTQFAQPVFQRCIN 613 (626)
Q Consensus 547 i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~---~~----~~~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~ 613 (626)
++.+.+......+|+..+++++...|.+... + +. .+...++|+..+++.+|..|.|+++.+++.++.
T Consensus 616 ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~ 695 (1049)
T 3m1i_C 616 IISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQ 695 (1049)
T ss_dssp HHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9998873111236999999999888764210 0 11 134678999999999999999999999998887
Q ss_pred HHHH
Q 006912 614 IIQT 617 (626)
Q Consensus 614 ~l~~ 617 (626)
+++.
T Consensus 696 ~~~~ 699 (1049)
T 3m1i_C 696 LYRA 699 (1049)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 6
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=2.3e-42 Score=382.28 Aligned_cols=568 Identities=15% Similarity=0.254 Sum_probs=425.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHH
Q 006912 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (626)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~ 92 (626)
.++++.+++..+++|+++ .|++|+++|++++++|++|..+..+|.. +.++++|++|++.|++.|.++|..++++.+.
T Consensus 14 dv~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~--s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~ 90 (1023)
T 4hat_C 14 DIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHRI 90 (1023)
T ss_dssp CHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHH--CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred CHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Confidence 456788888888899999 9999999999999999999999999975 7789999999999999999999999999999
Q ss_pred HHHHhHhhhhhC----C-----cHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhch
Q 006912 93 YIKSELLPCLGA----A-----DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (626)
Q Consensus 93 ~i~~~L~~~l~~----~-----~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~ 163 (626)
.||+.++..+.. + .+.+|+.++.+++.|++.+++..||++++.+.+.++++ +..+..++.+|..+.+++.
T Consensus 91 ~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~ 169 (1023)
T 4hat_C 91 GIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVF 169 (1023)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHH
Confidence 999999998742 1 46788999999999999999999999999999999654 4567888999999888865
Q ss_pred hccccCCC--------CCccchhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHH-HhcCCC
Q 006912 164 QVLDSDVP--------GLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLF-LLSNDP 233 (626)
Q Consensus 164 ~~~~~~~~--------~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~ 233 (626)
.....+.. ..+....+.+++.+.+.+.+ .++.+...+++|+.++++|+|-...-. .++++.++ ..+.
T Consensus 170 ~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~-~~ll~~l~~~~L~-- 246 (1023)
T 4hat_C 170 DFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYE-TNILELLSTKFMT-- 246 (1023)
T ss_dssp TSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHS-SSHHHHHHTHHHH--
T ss_pred HhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcc-hhHHHHHHHHHcC--
Confidence 42111100 00112244555555555544 466788899999999999987432211 12344444 3332
Q ss_pred CHHHHHHHHHHHHHHHh---------------------------------------------------------------
Q 006912 234 SAEVRKLVCAAFNLLIE--------------------------------------------------------------- 250 (626)
Q Consensus 234 ~~~~~~~~~~~l~~l~~--------------------------------------------------------------- 250 (626)
+++.|..|++||..++.
T Consensus 247 ~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e 326 (1023)
T 4hat_C 247 SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLA 326 (1023)
T ss_dssp SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 33445555555555443
Q ss_pred hCccchh------hhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccC----CcchhHHhhhhhhHHHHhhhcccCchh
Q 006912 251 VRPSFLE------PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ----LPHENLKEFLPRLVPVLLSNMIYADDD 320 (626)
Q Consensus 251 ~~~~~~~------~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~----~~~~~~~~~l~~li~~l~~~l~~~~~d 320 (626)
.+...+. +.+...+.+++.+....+.++...+++||..+++.. ......+|++.++++.++..|...++.
T Consensus 327 ~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~ 406 (1023)
T 4hat_C 327 RNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEV 406 (1023)
T ss_dssp HHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTC
T ss_pred HHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 2221111 111111224444445567778888999999988751 235567899999999999999886632
Q ss_pred hhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcC
Q 006912 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA 400 (626)
Q Consensus 321 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~ 400 (626)
. .+++++.+ .++ +.. .+.|+...| +....+|..++...+.++++.+++.+.+.+.+
T Consensus 407 ~-ive~d~~~-------~~~-----------e~~--~d~d~~~~f---~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~ 462 (1023)
T 4hat_C 407 L-VVENDEGE-------IVR-----------EFV--KESDTIQLY---KSEREVLVYLTHLNVIDTEEIMISKLARQIDG 462 (1023)
T ss_dssp C-EEECTTSC-------EEE-----------CSS--CCGGGHHHH---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSS
T ss_pred c-cCCCCCcc-------HHH-----------Hhc--cchHHHHHH---HHHHHHHHHHhccCHHHHHHHHHHHHHHHhcC
Confidence 1 11111000 000 000 011111122 22237888888888888888889988888765
Q ss_pred CCCCChhHHHHHHHHHHHHHccCccc-hhhhHHHHHHHHhhhcC-----CCchHHHHHHHHHHHHHHHHHhhhcCCCchh
Q 006912 401 SGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (626)
Q Consensus 401 ~~~~~~~~r~aal~~l~~l~~~~~~~-~~~~l~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 474 (626)
+ ..+|+.|+|+++++|++++++.+. ..++++.+++.++..+. |+.+.||..++|++|++++|+.. +.
T Consensus 463 ~-~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~------~~ 535 (1023)
T 4hat_C 463 S-EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA------HW 535 (1023)
T ss_dssp T-TCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH------CH
T ss_pred C-CCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc------cH
Confidence 3 133999999999999999988643 56899999999988876 46788999999999999999973 58
Q ss_pred hhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccc--------cchHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 006912 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL--------APRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (626)
Q Consensus 475 ~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~--------~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~ 546 (626)
.+++++++.++..+.++++.|+.+||+||.++++.|+..+ .||++.++..+...+.+.+.+.+..++++++.
T Consensus 536 ~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~ 615 (1023)
T 4hat_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1023)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8999999999999998899999999999999999997655 58999999999999988888888899999999
Q ss_pred HHHHhccccCChhhhhhhhHHHHHHHhcCCC-------------CCCccchHHHHHHHHHHHhccccccchHHHHHHHHH
Q 006912 547 LADAVGFELNQPVYLDILMPPLIAKWQQLPN-------------SDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCIN 613 (626)
Q Consensus 547 i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------------~~~~~~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~ 613 (626)
++++.+....++.+++.+++++...|+++.. ..+++...++|+..++.++|..|.|++.++++.+++
T Consensus 616 vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~ 695 (1023)
T 4hat_C 616 IISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQ 695 (1023)
T ss_dssp HHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 9999986554457999999999988876431 012346889999999999999999999999999998
Q ss_pred HHHHH
Q 006912 614 IIQTQ 618 (626)
Q Consensus 614 ~l~~~ 618 (626)
+.+.-
T Consensus 696 ~y~~~ 700 (1023)
T 4hat_C 696 LYRAV 700 (1023)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 75543
No 7
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1.1e-41 Score=386.14 Aligned_cols=556 Identities=15% Similarity=0.198 Sum_probs=420.8
Q ss_pred HHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHH
Q 006912 13 GFNEICRLLEQ-QISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (626)
Q Consensus 13 ~~~~l~~~l~~-~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~ 91 (626)
.++++.+++.. ..++|++ .|++|+++|++++++|++|..+..+|.. +.++++|++|++.||+.|.++|..++++.+
T Consensus 22 ~~~~l~~~l~~l~~~~~~~-~r~~A~~~L~~~~~~p~~~~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~ 98 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIE-NKNLAQKWLMQAQVSPQAWHFSWQLLQP--DKVPEIQYFGASALHIKISRYWSDIPTDQY 98 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHSTTHHHHHHHHTST--TSCHHHHHHHHHHHHHHHHHCGGGSCGGGH
T ss_pred hHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHhcCHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHhCHHhCCHHHH
Confidence 46678888888 4468888 9999999999999999999999999875 788999999999999999999999999999
Q ss_pred HHHHHhHhhhhhC---CcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhcc-----CChhHHhHHHHHHHHHhhhch
Q 006912 92 QYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-----NDINHMEGAMDALSKICEDIP 163 (626)
Q Consensus 92 ~~i~~~L~~~l~~---~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~-----~~~~~r~~~l~~l~~l~~~~~ 163 (626)
..||+.+++.+.+ .++.+|+.++.+++.|++.+++..||++++.+.+.+++ +++..+..++.+|..++++..
T Consensus 99 ~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~ 178 (963)
T 2x19_B 99 ESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQ 178 (963)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHh
Confidence 9999999999865 36899999999999999999888999999999999976 366688999999999987643
Q ss_pred hc-c----ccCCCCCccchhhhhHHHHHHhcCCCC--hHHHHHHHHHHH-------------------------------
Q 006912 164 QV-L----DSDVPGLAECPINIFLPRLLQFFQSPH--TSLRKLSLGSVN------------------------------- 205 (626)
Q Consensus 164 ~~-~----~~~~~~~~~~~~~~il~~l~~~l~~~~--~~vr~~al~~l~------------------------------- 205 (626)
.. . .......+....+.+++.+.+.+++.. ..++..+++|+.
T Consensus 179 ~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~~ 258 (963)
T 2x19_B 179 TSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDS 258 (963)
T ss_dssp TCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHHH
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCchHHHH
Confidence 21 1 001111222345556655555555432 124555555554
Q ss_pred ------HHHhcc-chHHHHhHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHHhhCccchh------hhHHHHHH
Q 006912 206 ------QFIMLM-PSALFVSMDQYLQGLFL-------LSNDPSAEVRKLVCAAFNLLIEVRPSFLE------PHLRNLFE 265 (626)
Q Consensus 206 ------~~~~~~-~~~~~~~~~~~l~~l~~-------~~~~~~~~~~~~~~~~l~~l~~~~~~~~~------~~l~~l~~ 265 (626)
.++... +....+.+..+++.++. ...+.+.+.....++.+..+.+.++..+. +++..+++
T Consensus 259 a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~ 338 (963)
T 2x19_B 259 SVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVN 338 (963)
T ss_dssp HHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHH
Confidence 443321 11112223333333332 22334556777888888888877665553 56667788
Q ss_pred HHHhhccC-----CChHHHHHHHhHHHHhhcc---------CCcchhHHhhhhhhHHHHhhhcccCchh-hhhhhhhccC
Q 006912 266 YMLQVNKD-----TDDDVALEACEFWHSYFEA---------QLPHENLKEFLPRLVPVLLSNMIYADDD-ESLVEAEEDE 330 (626)
Q Consensus 266 ~~~~~~~~-----~~~~v~~~a~~~l~~l~~~---------~~~~~~~~~~l~~li~~l~~~l~~~~~d-~~~~~~~~~e 330 (626)
.++....+ .+++++..+++||..+++. +.....+++++.++++.++..+...+++ .+.|++|
T Consensus 339 ~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~d--- 415 (963)
T 2x19_B 339 MIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSD--- 415 (963)
T ss_dssp HHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHH---
T ss_pred HHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChh---
Confidence 88877664 4667889999999998873 1234456788999999998888643332 1112111
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCCCccccccc-cHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhh----cCCCCCC
Q 006912 331 SLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW-NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKL----SASGDEA 405 (626)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l----~~~~~~~ 405 (626)
+ ...| ..|+.+..++..++...|..+++.+++.+...+ .+++
T Consensus 416 -----------------------------e-~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~--- 462 (963)
T 2x19_B 416 -----------------------------E-KEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYS--- 462 (963)
T ss_dssp -----------------------------H-HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCC---
T ss_pred -----------------------------H-HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCc---
Confidence 0 1112 468899999999999999888888899888888 4555
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~ 485 (626)
|+.|+++++++|.+++++.+...++++.+++.+ ..+.++++.||..+++++|++++++.. +.+++..+++.++
T Consensus 463 w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~~~vr~~~~~~l~~~~~~l~~------~~~~l~~vl~~l~ 535 (963)
T 2x19_B 463 WQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISNVQLADTVMFTIGALSEWLAD------HPVMINSVLPLVL 535 (963)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCSHHHHHHHHHHHHHTHHHHHH------CHHHHTTTHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHh------CHHHHHHHHHHHH
Confidence 999999999999999998766667888888854 455667899999999999999999874 3588999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhc-cccCChhhhh
Q 006912 486 KRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVG-FELNQPVYLD 562 (626)
Q Consensus 486 ~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~--~~~~~~~~~~~l~~i~~~~~-~~~~~~~~~~ 562 (626)
..+++ +.|+..|+.+|.++++.++..+.||++.+++.+..++.+. +...+..++++++.++.+.+ .++. +|+.
T Consensus 536 ~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~--~~~~ 611 (963)
T 2x19_B 536 HALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL--KNLH 611 (963)
T ss_dssp HHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH--HHHH
T ss_pred HHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH--HHHH
Confidence 99976 8999999999999999999999999999999999998863 45667789999999998876 4443 6999
Q ss_pred hhhHHHHHHHhcCCCC--CCc----cchHHHHHHHHHHHhccc----------------------cccchHHHHHHHHHH
Q 006912 563 ILMPPLIAKWQQLPNS--DKD----LFPLLECFTSIAQALGAG----------------------FTQFAQPVFQRCINI 614 (626)
Q Consensus 563 ~l~~~l~~~~~~~~~~--~~~----~~~~l~~~~~l~~~~g~~----------------------f~~~~~~i~~~l~~~ 614 (626)
.+++++...|++...+ +.+ +...++|++.+++.++.. +.++.+.+++.+.++
T Consensus 612 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (963)
T 2x19_B 612 SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKV 691 (963)
T ss_dssp HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHH
Confidence 9999999988753211 111 247899999999998742 455788899998888
Q ss_pred HHHH
Q 006912 615 IQTQ 618 (626)
Q Consensus 615 l~~~ 618 (626)
+++.
T Consensus 692 l~~~ 695 (963)
T 2x19_B 692 LSKW 695 (963)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 8
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=1.5e-41 Score=384.48 Aligned_cols=554 Identities=13% Similarity=0.181 Sum_probs=400.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHH
Q 006912 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (626)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~ 93 (626)
++++.+++..+++||++ .|++|+++|++++++|++|.++.++|.. +.++++|++|++.|++.|..+|..++++.+..
T Consensus 6 ~~~l~~~l~~~~~~d~~-~r~~A~~~L~~~~~~p~~w~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ 82 (971)
T 2x1g_F 6 IARLEEAVVSFYRSNSQ-NQAITHEWLTDAEASPQAWQFSWQLMQL--GKSQEVQFFGAITLHSKLMKHWHEVPPENREE 82 (971)
T ss_dssp -----CTHHHHHTSTTT-C----CHHHHHTTTSTHHHHHHHHHTCT--TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHH
T ss_pred HHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHH
Confidence 45678888888899999 9999999999999999999999999975 77899999999999999999999999999999
Q ss_pred HHHhHhhhhhC---CcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccC------ChhHHhHHHHHHHHHhhhchh
Q 006912 94 IKSELLPCLGA---ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN------DINHMEGAMDALSKICEDIPQ 164 (626)
Q Consensus 94 i~~~L~~~l~~---~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~------~~~~r~~~l~~l~~l~~~~~~ 164 (626)
+|+.+++.+.+ .++.||+.++.+++.|++.+++ .||++++.+.+.++++ ++..++.++.+|..++++...
T Consensus 83 ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~ 161 (971)
T 2x1g_F 83 LKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQV 161 (971)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhc
Confidence 99999998864 3689999999999999999988 9999999999999875 567889999999999976432
Q ss_pred ccccCCC-----CCccchhhhhHHHHHHhcCCC-C-------hHHHHHHHHHHHHHHh--ccchH----HH---------
Q 006912 165 VLDSDVP-----GLAECPINIFLPRLLQFFQSP-H-------TSLRKLSLGSVNQFIM--LMPSA----LF--------- 216 (626)
Q Consensus 165 ~~~~~~~-----~~~~~~~~~il~~l~~~l~~~-~-------~~vr~~al~~l~~~~~--~~~~~----~~--------- 216 (626)
.- ...+ ..+....+.+++.+.+.+++. + ..++..+++|+..++. +.|.. +.
T Consensus 162 ~~-~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~L~~~ 240 (971)
T 2x1g_F 162 IH-TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHK 240 (971)
T ss_dssp CC-CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHH
T ss_pred cC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHhhhhh
Confidence 21 1100 001122445555555555431 1 2688899999988776 34421 00
Q ss_pred -----------------------------------------HhHHHHHHHHHH-------hcCCCC---HHHHHHHHHHH
Q 006912 217 -----------------------------------------VSMDQYLQGLFL-------LSNDPS---AEVRKLVCAAF 245 (626)
Q Consensus 217 -----------------------------------------~~~~~~l~~l~~-------~~~~~~---~~~~~~~~~~l 245 (626)
+.+..+++.+.. ...+.+ ++.....++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~ 320 (971)
T 2x1g_F 241 CYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLF 320 (971)
T ss_dssp HHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHH
T ss_pred hccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHH
Confidence 011122222222 123334 26777788888
Q ss_pred HHHHhhCccchh-----------hhHHHHHHHHHhhccC-----CChHHHHHHHhHHHHhhcc----------CCcchhH
Q 006912 246 NLLIEVRPSFLE-----------PHLRNLFEYMLQVNKD-----TDDDVALEACEFWHSYFEA----------QLPHENL 299 (626)
Q Consensus 246 ~~l~~~~~~~~~-----------~~l~~l~~~~~~~~~~-----~~~~v~~~a~~~l~~l~~~----------~~~~~~~ 299 (626)
..+.+.+...+. +++..+++.++..+.. .+++++..+++||.++++. .......
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~ 400 (971)
T 2x1g_F 321 VSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYI 400 (971)
T ss_dssp HHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 888876665543 4666777777776533 4778999999999998762 1123456
Q ss_pred HhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHH
Q 006912 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (626)
Q Consensus 300 ~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~ 379 (626)
++++.++++.++..+...+++ + | .+.+.++.....+.|+++..++..++
T Consensus 401 ~~~~~~ll~~l~~~~~~p~~~-~-~-----------------------------~~~d~~e~~~f~~~R~~~~~~l~~~~ 449 (971)
T 2x1g_F 401 KPLYAHLTRILVRKSEQPDEK-S-L-----------------------------AKWSSDDLECFRCYRQDISDTFMYCY 449 (971)
T ss_dssp HHHHHHHHHHHHHHTSCCCTT-T-T-----------------------------SCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcc-c-c-----------------------------cccCHhHHHHHHHHHHHHHHHHHHHH
Confidence 789999999998877543321 1 1 00011111222368999999999999
Q ss_pred hhcCcchHHhHHHHHHHhhcC-----CCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcC--CCchHHHHH
Q 006912 380 NVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD--DKFPLIRSI 452 (626)
Q Consensus 380 ~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~--d~~~~vr~~ 452 (626)
..+|+.+++.+++.+.+.+.+ ++ |+.|++++++++.+++++.+...++++.+++ ++..+. |+++.||..
T Consensus 450 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~---w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~ 525 (971)
T 2x1g_F 450 DVLNDYILEILAAMLDEAIADLQRHPTH---WTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGT 525 (971)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHCTTC---CHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHH
Confidence 999988888999998888765 45 9999999999999999997666688888888 445555 579999999
Q ss_pred HHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhh
Q 006912 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (626)
Q Consensus 453 a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~ 532 (626)
+++++|++++++.. ...++..+++.++..+ + +.|+.+|+.|+.++++.++..+.||++.+++.+..++.+.
T Consensus 526 a~~~l~~~~~~l~~------~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~ 596 (971)
T 2x1g_F 526 ALETMGSYCNWLME------NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTG 596 (971)
T ss_dssp HHHHHHHTHHHHC----------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhc------CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence 99999999999874 3578999999999999 4 7899999999999999999999999999999999999874
Q ss_pred --hHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCCCC---C----ccchHHHHHHHHHHHhcc-----
Q 006912 533 --QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSD---K----DLFPLLECFTSIAQALGA----- 598 (626)
Q Consensus 533 --~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---~----~~~~~l~~~~~l~~~~g~----- 598 (626)
+...+..++++++.++.+.+.+- ..+|+..+++++...|++...++ . .+..++++++.+.+.++.
T Consensus 597 ~~~~~~~~~~~~ai~~i~~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~ 675 (971)
T 2x1g_F 597 RMKNSDSVRLMFSIGKLMSLLRPEE-IPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQ 675 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCTTH-HHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred CCChHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcc
Confidence 46777899999999998876222 23699999999998887542211 1 124667777777776653
Q ss_pred --------ccccchHHHHHHHHHHHHH
Q 006912 599 --------GFTQFAQPVFQRCINIIQT 617 (626)
Q Consensus 599 --------~f~~~~~~i~~~l~~~l~~ 617 (626)
.+.++.+.+++.+.+++++
T Consensus 676 ~~~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 676 ATDQPIVQPVLLVMQRTMPIFKRIAEM 702 (971)
T ss_dssp --------CCHHHHHTTHHHHHHHHHH
T ss_pred cccccCCCchHHHHHHHHHHHHHHHHh
Confidence 4567888999999988875
No 9
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=100.00 E-value=1.2e-40 Score=346.91 Aligned_cols=419 Identities=23% Similarity=0.377 Sum_probs=353.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc--CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH-----------
Q 006912 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT----------- 81 (626)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~----------- 81 (626)
+++.++|.+++|||++ +|++|+++|+++++ .|+|+..|.+++.. .+.++.+|++|+++||+.+..
T Consensus 1 ~~l~~~L~~~~s~d~~-~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 1 MELITILEKTVSPDRL-ELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp -CHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHH-HHHHHHHHHHHHHhhChHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 3678999999999999 99999999999876 59999999999974 346899999999999999854
Q ss_pred hhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc-CchHHHHHHHHHHhccC--ChhHHhHHHHHHHHH
Q 006912 82 AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN--DINHMEGAMDALSKI 158 (626)
Q Consensus 82 ~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~-~~~~~ll~~l~~~l~~~--~~~~r~~~l~~l~~l 158 (626)
.|..++++.+..||..+++.+.++++.+ +.++.+++.|++.+++ ..|++++|.+.+.++++ ++.+|++++.+|+.+
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l 157 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3788999999999999999999888888 9999999999998765 59999999999999998 899999999999999
Q ss_pred hhhc-hhccccCCCCCccchhhhhHHHHHHhcCCC--ChHHHHHHHHHHHHHHhccchHHHHh-H-HHHHHHHHHhcCCC
Q 006912 159 CEDI-PQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVS-M-DQYLQGLFLLSNDP 233 (626)
Q Consensus 159 ~~~~-~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~~-~-~~~l~~l~~~~~~~ 233 (626)
++.. +..+ ......+++.+.++++++ ++.||..|++++..++.+..+..... . ..+++.+...+.++
T Consensus 158 ~~~~~~~~~--------~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 229 (462)
T 1ibr_B 158 CQDIDPEQL--------QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP 229 (462)
T ss_dssp HHHSCGGGT--------GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred HHhCCchhh--------HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence 9876 3322 245688999999999997 78999999999999887654332111 1 22467777778888
Q ss_pred CHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhccCCChHHHHHHHhHHHHhhccC-------------------
Q 006912 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ------------------- 293 (626)
Q Consensus 234 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~------------------- 293 (626)
++++|..++++|..+++.+++.+.+|+. .+++.++..+.+.++++|..++++|..+++..
T Consensus 230 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (462)
T 1ibr_B 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH 309 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccc
Confidence 9999999999999999999999999999 99999998899999999999999999998752
Q ss_pred CcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHH
Q 006912 294 LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAA 373 (626)
Q Consensus 294 ~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~ 373 (626)
.....+++++..++|.++..+...++ + +.+..|++|.+|..
T Consensus 310 ~~~~~~~~~~~~l~p~l~~~l~~~d~-----------------------------------d----~~~~~~~~r~~a~~ 350 (462)
T 1ibr_B 310 TSKFYAKGALQYLVPILTQTLTKQDE-----------------------------------N----DDDDDWNPCKAAGV 350 (462)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCCS-----------------------------------S----CCTTCCSHHHHHHH
T ss_pred hhHHHHHHHhhhccHHHHHHHHhccc-----------------------------------c----cccccchHHHHHHH
Confidence 22334556778888888776653211 0 11235899999999
Q ss_pred HHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc-cchhhhHHHHHHHHhhhcCCCchHHHHH
Q 006912 374 ALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSI 452 (626)
Q Consensus 374 ~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~ 452 (626)
+++.++..+|+.+++.+++.+...+++++ |++|++++.++|.+++++. +.+.++++.++|.+++.+.|+++.||.+
T Consensus 351 ~L~~l~~~~~~~~~~~~~~~l~~~l~~~~---~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~ 427 (462)
T 1ibr_B 351 CLMLLATCCEDDIVPHVLPFIKEHIKNPD---WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDT 427 (462)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 99999999998889999999999999988 9999999999999999886 5567888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhc
Q 006912 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (626)
Q Consensus 453 a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~ 489 (626)
|++++|++++++.+.+ ...++++++++.++++++
T Consensus 428 a~~~l~~~~~~~~~~~---~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 428 AAWTVGRICELLPEAA---INDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHHHHHHGGGGC---CSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHhc
Confidence 9999999999987531 135789999999987664
No 10
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=7.2e-39 Score=351.70 Aligned_cols=566 Identities=15% Similarity=0.227 Sum_probs=419.8
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHH
Q 006912 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (626)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~ 92 (626)
.++.+.+++..+++|+++ .|++|+++|++++++|++|..+..+|.. +.++.+|++|++.|++.|.++|..++++.+.
T Consensus 26 Dv~~Le~lv~~ly~p~~~-~r~qA~~~L~q~q~sp~aw~~~~~iL~~--s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~ 102 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGA-QQRMAQEVLTHLKEHPDAWTRVDTILEF--SQNMNTKYYGLQILENVIKTRWKILPRNQCE 102 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHH-HHHHHHHHHHTSSCCSCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred CHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHcCchHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHH
Confidence 467889999999999999 9999999999999999999999988865 7799999999999999999999999999999
Q ss_pred HHHHhHhhhhhC---------CcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhch
Q 006912 93 YIKSELLPCLGA---------ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (626)
Q Consensus 93 ~i~~~L~~~l~~---------~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~ 163 (626)
.||+.++..+.. .++.+++.++.+++.+++.+++..||++++.+.+.+++ ++..+..++.+|..+.+++.
T Consensus 103 ~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 103 GIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHH
Confidence 999999998742 35788899999999999999999999999999998865 45678889999999998854
Q ss_pred hcccc--------CCCCCccchhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHH-HHhcCCC
Q 006912 164 QVLDS--------DVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGL-FLLSNDP 233 (626)
Q Consensus 164 ~~~~~--------~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~ 233 (626)
+.-.. .....+......+++.+...+++ .++.+...+++++..+++|+|-...-. .++++.+ +..+.
T Consensus 182 d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~-~~ll~~L~~~~L~-- 258 (1073)
T 3gjx_A 182 DFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFE-TKLISTLIYKFLN-- 258 (1073)
T ss_dssp TSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS-SSHHHHHHHHTSS--
T ss_pred hcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhcc-chHHHHHHHHhcC--
Confidence 32100 00001112245555555555543 567888889999999999987443211 1345544 34443
Q ss_pred CHHHHHHHHHHHHHHHhhCccc----------------------------------------------------------
Q 006912 234 SAEVRKLVCAAFNLLIEVRPSF---------------------------------------------------------- 255 (626)
Q Consensus 234 ~~~~~~~~~~~l~~l~~~~~~~---------------------------------------------------------- 255 (626)
++++|..|++||..++....+.
T Consensus 259 ~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~l 338 (1073)
T 3gjx_A 259 VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQL 338 (1073)
T ss_dssp SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655431100
Q ss_pred ------hhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc---CC--------------------cchhHHhhhhhh
Q 006912 256 ------LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA---QL--------------------PHENLKEFLPRL 306 (626)
Q Consensus 256 ------~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~---~~--------------------~~~~~~~~l~~l 306 (626)
+...+...+.+++.+....+.++...++++|..+.+. +. ......+++.++
T Consensus 339 Ie~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L 418 (1073)
T 3gjx_A 339 LEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKV 418 (1073)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHH
T ss_pred HhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHH
Confidence 0111122223344455567788888999999887654 10 112356778888
Q ss_pred HHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcch
Q 006912 307 VPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI 386 (626)
Q Consensus 307 i~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 386 (626)
...++..|...++.. . .+.++++ .+|.+ . . +.++-+.++....++..++...+.++
T Consensus 419 ~~vlI~~m~~P~ev~--i-~e~e~ge-----~~re~---~--------~-----d~~~~~ly~~mrd~L~~lt~l~~~~~ 474 (1073)
T 3gjx_A 419 RLLMVSRMAKPEEVL--V-VENDQGE-----VVREF---M--------K-----DTDSINLYKNMRETLVYLTHLDYVDT 474 (1073)
T ss_dssp HHHHHHTCCCSCCEE--E-EECSSSC-----EEEEE---C--------S-----SCHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhcCCCcccc--c-cCcccch-----HHHHH---H--------h-----hcchHHHHHHHHHHHHHHhcCCHHHH
Confidence 888888887654321 0 0100000 01100 0 0 01112456677788877765556677
Q ss_pred HHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccc-hhhhHHHHHHHHhhhcCCC-----chHHHHHHHHHHHHH
Q 006912 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDK-----FPLIRSISCWTLSRF 460 (626)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~-~~~~l~~l~~~l~~~l~d~-----~~~vr~~a~~~l~~l 460 (626)
...+++.+.+.++.+ ..+|..++++++++|+++....+. -.++++.+++.++....++ .+.++...++++|+|
T Consensus 475 ~~i~~~~l~~~~~~~-~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY 553 (1073)
T 3gjx_A 475 EIIMTKKLQNQVNGT-EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQY 553 (1073)
T ss_dssp HHHHHHHHHHHHTSC-CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCC-CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhh
Confidence 778888887776543 344999999999999999665533 3588999999998877544 467788889999999
Q ss_pred HHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccc--------cchHHHHHHHHHHHHhhh
Q 006912 461 SKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL--------APRLEIILQHLMMAFGKY 532 (626)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~--------~~~l~~i~~~l~~~l~~~ 532 (626)
++|+.. +..++..++..++..+.++++.|+.+||.|+.++++.|+..+ .||++.++..+.....+.
T Consensus 554 ~~wl~~------h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l 627 (1073)
T 3gjx_A 554 PRFLRA------HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDL 627 (1073)
T ss_dssp HHHHHH------CHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTC
T ss_pred HHHHHh------CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhc
Confidence 999984 689999999999999999999999999999999999998654 579999999999998888
Q ss_pred hHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCCC---------CC----CccchHHHHHHHHHHHhccc
Q 006912 533 QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPN---------SD----KDLFPLLECFTSIAQALGAG 599 (626)
Q Consensus 533 ~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---------~~----~~~~~~l~~~~~l~~~~g~~ 599 (626)
+.+.....+++++.++.+.+.+..++.+++.+|++....|.++.. .| +++...++|...++.++|..
T Consensus 628 ~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~ 707 (1073)
T 3gjx_A 628 QPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHP 707 (1073)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchh
Confidence 889999999999999999997654457999999999999876531 01 23468899999999999999
Q ss_pred cccchHHHHHHHHHHHH
Q 006912 600 FTQFAQPVFQRCINIIQ 616 (626)
Q Consensus 600 f~~~~~~i~~~l~~~l~ 616 (626)
|.|++.++++.++++.+
T Consensus 708 f~~~~~~i~~~~l~~y~ 724 (1073)
T 3gjx_A 708 FVIQLGRIYLDMLNVYK 724 (1073)
T ss_dssp GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887754
No 11
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=2.8e-37 Score=341.86 Aligned_cols=558 Identities=15% Similarity=0.194 Sum_probs=396.7
Q ss_pred HHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChh-
Q 006912 13 GFNEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS- 89 (626)
Q Consensus 13 ~~~~l~~~l~~~~s~--d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~- 89 (626)
.++++.+++..+++| |++ .|++|+++|++++++|++|..+..+|......++++|++|++.|++.|+ .++++
T Consensus 4 ~~~~v~~Al~~~~~p~sd~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~ 78 (980)
T 3ibv_A 4 SAQDVENAVEAALDPSVGPI-IKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNES 78 (980)
T ss_dssp HHHHHHHHHHHHHCTTSCHH-HHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTT
T ss_pred CHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhh
Confidence 357889999888887 567 9999999999999999999999999975212389999999999999998 58888
Q ss_pred ---HHHHHHHhHhhhhhC-----CcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCCh-hHHhHHHHHHHHHhh
Q 006912 90 ---NQQYIKSELLPCLGA-----ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICE 160 (626)
Q Consensus 90 ---~~~~i~~~L~~~l~~-----~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~-~~r~~~l~~l~~l~~ 160 (626)
.+..||+.++..+.. ....+|+.++.+++.+++.+++..||++++.+.+.+++++. ......+.+|..+.+
T Consensus 79 ~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~E 158 (980)
T 3ibv_A 79 NLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGD 158 (980)
T ss_dssp SHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHH
Confidence 999999999998853 46789999999999999999999999999999999987544 233444555555545
Q ss_pred hchhccccCC----------CCCcc-chhhhhHHHHHHhc----CCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHH
Q 006912 161 DIPQVLDSDV----------PGLAE-CPINIFLPRLLQFF----QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG 225 (626)
Q Consensus 161 ~~~~~~~~~~----------~~~~~-~~~~~il~~l~~~l----~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~ 225 (626)
++.+...... ...+. ..+..+.+.+++.+ ..+++.++..+++|+.+++.|+|....-. ..+++.
T Consensus 159 Ev~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~ 237 (980)
T 3ibv_A 159 EIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-EPCMNL 237 (980)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHH
T ss_pred HHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHHH
Confidence 5433210000 00000 11233344444444 33678899999999999999988654433 456666
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhCcc---------------------------------------------------
Q 006912 226 LFLLSNDPSAEVRKLVCAAFNLLIEVRPS--------------------------------------------------- 254 (626)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~--------------------------------------------------- 254 (626)
+++.+.+ +++|..|++||..++.+...
T Consensus 238 l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~ 315 (980)
T 3ibv_A 238 LYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDP 315 (980)
T ss_dssp HHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 6666653 45666666665544432110
Q ss_pred ---------chhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc----C---CcchhHHhhhhhhHHHHhhhcccCc
Q 006912 255 ---------FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----Q---LPHENLKEFLPRLVPVLLSNMIYAD 318 (626)
Q Consensus 255 ---------~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~----~---~~~~~~~~~l~~li~~l~~~l~~~~ 318 (626)
...+++..+++.++.++.++++++...+++||..+.+. + ......++++.++++.++..+++.+
T Consensus 316 ~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~ 395 (980)
T 3ibv_A 316 SELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDE 395 (980)
T ss_dssp C--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCC
Confidence 01145557778888888899999999999999987653 1 1346677999999999999998866
Q ss_pred hhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHH----hHHHHH
Q 006912 319 DDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP----TLMPVI 394 (626)
Q Consensus 319 ~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~l~~~l 394 (626)
++. |++ ++|++|+...-..|+.....++.++...++.++. .+.+.+
T Consensus 396 d~~--~~~----------------------------~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l 445 (980)
T 3ibv_A 396 SQE--WDD----------------------------DPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSL 445 (980)
T ss_dssp TCC--CCC----------------------------CSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ccc--ccc----------------------------ccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 431 211 1111122223347777774444444444445566 566666
Q ss_pred HHhhc---CCCCCChhHHHHHHHHHHHHHccCccc------hhhhHHHHHHHHhhhcC-----CCchHHHHHHHHHHHHH
Q 006912 395 QAKLS---ASGDEAWKDREAAVLALGAIAEGCIKG------LYPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRF 460 (626)
Q Consensus 395 ~~~l~---~~~~~~~~~r~aal~~l~~l~~~~~~~------~~~~l~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l 460 (626)
.+.+. +.+ |+.+|+++++++.+++++... ..++++.+++.+...++ ++||.||..+++++|+|
T Consensus 446 ~~~l~~~~~~~---W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ry 522 (980)
T 3ibv_A 446 STAATLSPENS---WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRY 522 (980)
T ss_dssp HHHTTSCHHHH---HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHT
T ss_pred HHHhcccCCCC---HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 66663 345 999999999999999998631 12445556666655543 88999999999999999
Q ss_pred HHHHhhhcCCCchhhhHHHHHHHHHH--HhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhh----h-
Q 006912 461 SKFIVQDIGHQNGREQFEKVLMGLLK--RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY----Q- 533 (626)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~ll~~l~~--~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~----~- 533 (626)
++|+.. +..+++++++.++. ++.++++.||.+|+.++.++++.|+..+.||++.++..+..++... +
T Consensus 523 s~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~ 596 (980)
T 3ibv_A 523 ASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTD 596 (980)
T ss_dssp GGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC
T ss_pred HHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCc
Confidence 999974 56899999999999 9999999999999999999999999999999999999988777631 1
Q ss_pred ----------------HHHHHHHHHHHHHHHHHhcc-ccCChhhhhhhhHHHHHHHhcCCC---CC-Cc---cchHHHHH
Q 006912 534 ----------------RRNLRIVYDAIGTLADAVGF-ELNQPVYLDILMPPLIAKWQQLPN---SD-KD---LFPLLECF 589 (626)
Q Consensus 534 ----------------~~~~~~~~~~l~~i~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~---~~-~~---~~~~l~~~ 589 (626)
-+.+..+++++|.++...+. ...+..|++.+++++.+.+++.-. .. .+ +...+.++
T Consensus 597 ~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al 676 (980)
T 3ibv_A 597 MDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAI 676 (980)
T ss_dssp --CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHH
T ss_pred ccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHH
Confidence 12456799999999998762 112346999999999988774311 11 11 12456667
Q ss_pred HHHHHHhcc---c---cccchHHHHHHHHHHHHH
Q 006912 590 TSIAQALGA---G---FTQFAQPVFQRCINIIQT 617 (626)
Q Consensus 590 ~~l~~~~g~---~---f~~~~~~i~~~l~~~l~~ 617 (626)
+.+++.+.. . ....+.++++.++..|+.
T Consensus 677 ~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~ 710 (980)
T 3ibv_A 677 GNFAKGFPARGSEEVAWLASFNKASDEIFLILDR 710 (980)
T ss_dssp HHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHh
Confidence 777775532 1 223445666666666653
No 12
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=7.1e-36 Score=346.37 Aligned_cols=558 Identities=14% Similarity=0.170 Sum_probs=429.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC------C----hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 006912 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFP------D----FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (626)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p------~----~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~ 84 (626)
.++.++|+.+.|||++ .|++|+..|.+..+.+ . ++..++..+. +.++.+|..|+..|.+...
T Consensus 6 ~~l~~lL~~l~s~d~~-~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~---d~~~~vR~~A~~~L~~l~~---- 77 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKD-FRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE---DKNGEVQNLAVKCLGPLVS---- 77 (1230)
T ss_dssp HHHHHHHHHTTCSSHH-HHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHHT----
T ss_pred hHHHHHHHhcCCCCHh-HHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHH----
Confidence 3578899999999999 9999999998864422 2 2334444442 6789999999999976543
Q ss_pred cCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcC---------chHHHHHHHHHHhc-cCChhHHhHHHHH
Q 006912 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---------GWLELLQALVTCLD-SNDINHMEGAMDA 154 (626)
Q Consensus 85 ~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~---------~~~~ll~~l~~~l~-~~~~~~r~~~l~~ 154 (626)
.+++.....+++.++..+.++++.+|..++.+++.++...++. .|++++|.+.+.+. ++++.+|..++.+
T Consensus 78 ~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 78 KVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp TSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 4567788899999999999998899999999999999876554 59999999999998 5889999999999
Q ss_pred HHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCC-C
Q 006912 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND-P 233 (626)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~ 233 (626)
++.+++..+..+. .+...+++.++..+.++++.+|..|+.++..++...++.+.+. +++.+.+.+.+ .
T Consensus 158 l~~~~~~~~~~l~--------~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~---~l~~l~~~L~~~~ 226 (1230)
T 1u6g_C 158 MADMLSRQGGLLV--------NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVD---LIEHLLSELSKND 226 (1230)
T ss_dssp HHHHHHHTCSSCT--------TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTT---HHHHHHHHHHHTC
T ss_pred HHHHHHHhHhHHH--------HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHH---HHHHHHHHhccCC
Confidence 9999987766443 3468899999999999999999999999999998877654332 34444443322 2
Q ss_pred CHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhh
Q 006912 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (626)
Q Consensus 234 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~ 313 (626)
+..+|..+++++..++...++.+.+|++.+++.++..+.+.++++|..+++++..+++. ..+.+.++++.++|.++..
T Consensus 227 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~--~~~~~~~~l~~li~~ll~~ 304 (1230)
T 1u6g_C 227 SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR--CPKEVYPHVSTIINICLKY 304 (1230)
T ss_dssp SSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC--TTCCCHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--ChHHHHHhHHHHHHHHHHH
Confidence 34678889999999999988899999999999999999998999999999999998886 4456678999999999998
Q ss_pred cccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCC----CCCccccccccHHHHHHHHHHHHHhhcCc---ch
Q 006912 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE----DDDDDIVNVWNLRKCSAAALDVLSNVFGD---EI 386 (626)
Q Consensus 314 l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~ 386 (626)
+...++. ..+++++. .+..+. . .+.++.+ +..++.+..|.+|.+|..++..++...|+ ..
T Consensus 305 l~~d~~~--~~~~d~~~--~~~~~~-------~--~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~ 371 (1230)
T 1u6g_C 305 LTYDPNY--NYDDEDED--ENAMDA-------D--GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF 371 (1230)
T ss_dssp CCCC-------------------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred hCCCCCC--CCcccccc--cccccc-------c--ccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 8764321 01000000 000000 0 0000000 00112345799999999999999997774 45
Q ss_pred HHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc-------------------cchhhhHHHHHHHHhhhcCCCch
Q 006912 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-------------------KGLYPHLSEIVAFLIPLLDDKFP 447 (626)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-------------------~~~~~~l~~l~~~l~~~l~d~~~ 447 (626)
++.++|.+...+.+++ ..+|.+++.+++.+....+ ..+..+++.+++.+...++|+++
T Consensus 372 ~~~l~~~l~~~l~d~~---~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~ 448 (1230)
T 1u6g_C 372 YKTVSPALISRFKERE---ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 448 (1230)
T ss_dssp HTTTHHHHHSTTSCSS---SHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH
Confidence 6677888888888887 9999999999888775321 23356777788888888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHhcc-cccchHHHHHHH
Q 006912 448 LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK--RVQEAACSAFATLEEEAAE-ELAPRLEIILQH 524 (626)
Q Consensus 448 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~--~v~~~a~~al~~l~~~~~~-~~~~~l~~i~~~ 524 (626)
.+|.+++.+++.++..++. ...+++..+++.++..+.|+++ .++..++.++..+++..+. .+.||++.+++.
T Consensus 449 ~vr~~~~~~L~~l~~~~~~-----~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~ 523 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPG-----ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPP 523 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTT-----TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHchh-----hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHH
Confidence 9999999999999987653 3567899999999999998764 8999999999999987764 488999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcc-------ccCChhhhhhhhHHHHHHHhcCCCCCCcc-chHHHHHHHHHHHh
Q 006912 525 LMMAFGKYQRRNLRIVYDAIGTLADAVGF-------ELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQAL 596 (626)
Q Consensus 525 l~~~l~~~~~~~~~~~~~~l~~i~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~l~~~~~l~~~~ 596 (626)
+...+.+.+..++..++.+++.+++.++. .+. +|++.++|.++..+... +.+... ..++.|++.++...
T Consensus 524 L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~--~~~~~ll~~ll~~l~~~-d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 524 VVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT--PYIKDLFTCTIKRLKAA-DIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH--HHHHHHHHHHHHHHSCS-SSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchH--HHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHh
Confidence 99998887777777889999999998876 443 69999999999888632 223333 48899999999999
Q ss_pred ccccccchHHHHHHHHHHHHH
Q 006912 597 GAGFTQFAQPVFQRCINIIQT 617 (626)
Q Consensus 597 g~~f~~~~~~i~~~l~~~l~~ 617 (626)
|..+.++++.+++.+...+.+
T Consensus 601 g~~~~~~~~~~l~~L~~~l~~ 621 (1230)
T 1u6g_C 601 GDNLGSDLPNTLQIFLERLKN 621 (1230)
T ss_dssp GGGCCTHHHHHHHHHHHHTTS
T ss_pred CchhhhhHHHHHHHHHHHhcc
Confidence 999999999999998877653
No 13
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=5.7e-34 Score=324.05 Aligned_cols=528 Identities=15% Similarity=0.202 Sum_probs=379.5
Q ss_pred CHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCC
Q 006912 10 QEQGFNEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (626)
Q Consensus 10 ~~~~~~~l~~~l~~~~s~--d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~ 87 (626)
.++..+++.+++..+++| |++ .|++|+++|++++++|++|..+..+|. +.+.++.+|++|++.||+.|.++|..++
T Consensus 6 ~~~~~~~l~~~l~~~~~p~~~~~-~r~~Ae~~L~~~~~~p~~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~~~W~~l~ 83 (1204)
T 3a6p_A 6 VNALCEQLVKAVTVMMDPNSTQR-YRLEALKFCEEFKEKCPICVPCGLRLA-EKTQVAIVRHFGLQILEHVVKFRWNGMS 83 (1204)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHH-HHHHHHHHHHHHHHHCTTHHHHHHHHT-STTSCHHHHHHHHHHHHHHHHHSGGGSC
T ss_pred HHHHHHHHHHHHHHHhCCCCChH-HHHHHHHHHHHHHhCchHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 356778899999999998 555 799999999999999988888888786 3377899999999999999999999999
Q ss_pred hhHHHHHHHhHhhhhhC-------CcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhh
Q 006912 88 PSNQQYIKSELLPCLGA-------ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICE 160 (626)
Q Consensus 88 ~~~~~~i~~~L~~~l~~-------~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~ 160 (626)
++.+..||+.+++.+.. .+..+|+.++.+++.|++.++++.||++++.+.+.+++ ++..++.++.+|..+++
T Consensus 84 ~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 84 RLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 99999999999998852 46899999999999999999999999999999999876 56778999999999998
Q ss_pred hchhccc--cC----CCCCccchhhhhHHHHHHhcCC-------------------CChHHHHHHHHHHHHHHhccchHH
Q 006912 161 DIPQVLD--SD----VPGLAECPINIFLPRLLQFFQS-------------------PHTSLRKLSLGSVNQFIMLMPSAL 215 (626)
Q Consensus 161 ~~~~~~~--~~----~~~~~~~~~~~il~~l~~~l~~-------------------~~~~vr~~al~~l~~~~~~~~~~~ 215 (626)
+....-. .. ....+...+..+++.+.+.+++ ++..++..+++|+.+++.|.|...
T Consensus 163 ev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~ 242 (1204)
T 3a6p_A 163 DVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSH 242 (1204)
T ss_dssp HHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHH
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHH
Confidence 7543200 00 0000111233555555555533 123577788888888777766432
Q ss_pred H-HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhC------------------------------------------
Q 006912 216 F-VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR------------------------------------------ 252 (626)
Q Consensus 216 ~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~------------------------------------------ 252 (626)
. +.-..+++.++..+.+ +++|..|++||..++...
T Consensus 243 i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k 320 (1204)
T 3a6p_A 243 ITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLK 320 (1204)
T ss_dssp HHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHH
T ss_pred HHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHH
Confidence 1 1101233333333331 233344444443333221
Q ss_pred -------------cc--------chhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCC--cchhHHhhhhhhHHH
Q 006912 253 -------------PS--------FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL--PHENLKEFLPRLVPV 309 (626)
Q Consensus 253 -------------~~--------~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~l~~li~~ 309 (626)
.. ...+.+..+++.++..+.+.+.++...++++|..+.+... ....+.+++.++++.
T Consensus 321 ~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~v 400 (1204)
T 3a6p_A 321 RLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRA 400 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 10 1123445667777777788888899999999999877632 234577899999999
Q ss_pred H---hhhcccCchhh---hhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcC
Q 006912 310 L---LSNMIYADDDE---SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG 383 (626)
Q Consensus 310 l---~~~l~~~~~d~---~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~ 383 (626)
+ +..+.+.+++. ..|..++ .++++|++...|+.|+.....+..++...+
T Consensus 401 l~~~l~k~~yp~~~~~~~~~~~~~D-------------------------~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p 455 (1204)
T 3a6p_A 401 SMTNLVKMGFPSKTDSPSCEYSRFD-------------------------FDSDEDFNAFFNSSRAQQGEVMRLACRLDP 455 (1204)
T ss_dssp HHHHHSCCCCSSCCSSTHHHHHHHH-------------------------CSSHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHhcCccccCCcchhhhhcc-------------------------cCCcHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 8 66776655332 1232111 111222335568899999999999999998
Q ss_pred cchHHhHHHHHHHhhcCC----------------------CCCChhHHHHHHHHHHHHHccCccch-hh-----hHHHHH
Q 006912 384 DEILPTLMPVIQAKLSAS----------------------GDEAWKDREAAVLALGAIAEGCIKGL-YP-----HLSEIV 435 (626)
Q Consensus 384 ~~~~~~l~~~l~~~l~~~----------------------~~~~~~~r~aal~~l~~l~~~~~~~~-~~-----~l~~l~ 435 (626)
...++.+.+.+...+.+. .+..|...++....+..++.++.... .+ .++.++
T Consensus 456 ~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll 535 (1204)
T 3a6p_A 456 KTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELL 535 (1204)
T ss_dssp HHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 877777777775554431 11237788888888888887762211 12 233444
Q ss_pred HHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhcc------------CCHHHHHHHHHHH
Q 006912 436 AFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD------------TNKRVQEAACSAF 503 (626)
Q Consensus 436 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d------------~~~~v~~~a~~al 503 (626)
+.++. +...+|.+|..++.++|++++++.. +..++.++++.++..+.+ .+..+|.+|+.++
T Consensus 536 ~~ll~-~~~~~p~l~~~~i~~l~~l~~~~~~------~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al 608 (1204)
T 3a6p_A 536 QMVLN-FDTKDPLILSCVLTNVSALFPFVTY------RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSI 608 (1204)
T ss_dssp HHHHH-CCCSCHHHHHHHHHHHHHHGGGGGT------CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHh-CCCCChHHHHHHHHHHHHHHHHHhc------CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHH
Confidence 44332 1346889999999999999999863 578999999999998876 2358999999999
Q ss_pred HHHHHHhcccccchHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhc
Q 006912 504 ATLEEEAAEELAPRLEIILQHLMMAFGKYQ---RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQ 574 (626)
Q Consensus 504 ~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~---~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ 574 (626)
.++++.+++.+.||++.+...+..++...+ .+.+....++++.++..+++...++.|+..+++++++.|.+
T Consensus 609 ~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 609 IKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999887555 56677888999888655555443456899999999999874
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.5e-29 Score=284.23 Aligned_cols=548 Identities=12% Similarity=0.102 Sum_probs=416.7
Q ss_pred HHHHHHhhc-CCCCHHHHHHHHHHHHHHhc-CCC-hHH----HHHHHH-hhcCCCCHHHHHHHHHHHHHHHHHh------
Q 006912 17 ICRLLEQQI-SPSSTADKSQIWQQLQQYSQ-FPD-FNN----YLAFIL-ARAEGKSVEIRQAAGLLLKNNLRTA------ 82 (626)
Q Consensus 17 l~~~l~~~~-s~d~~~~r~~a~~~L~~~~~-~p~-~~~----~l~~il-~~~~~~~~~~r~~a~~~l~~~i~~~------ 82 (626)
+.+.|.... +++.. +|+.|.+.|..+.. .|+ +.+ .++.++ ....+.++.+|..|..++.......
T Consensus 225 ll~~l~~~~~~~~~~-~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 303 (861)
T 2bpt_A 225 LMQVVCEATQAEDIE-VQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYE 303 (861)
T ss_dssp HHHHHHHHHTCSCHH-HHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444444443 56667 99999999988643 332 111 222222 1223667899999998887665432
Q ss_pred ------hccCC----hhHHHHHHHhHhhhhhC-------CcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCCh
Q 006912 83 ------YKSMS----PSNQQYIKSELLPCLGA-------ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI 145 (626)
Q Consensus 83 ------~~~l~----~~~~~~i~~~L~~~l~~-------~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~ 145 (626)
|+... ......+...++..+.+ ++..+|..++.+++.++...+....+.+++.+.+.+++++|
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 383 (861)
T 2bpt_A 304 LAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNW 383 (861)
T ss_dssp HHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSH
T ss_pred hhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCCh
Confidence 11111 11224566667777753 24689999999999999877667789999999999999999
Q ss_pred hHHhHHHHHHHHHhhhch-hccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHH--HHhHHHH
Q 006912 146 NHMEGAMDALSKICEDIP-QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL--FVSMDQY 222 (626)
Q Consensus 146 ~~r~~~l~~l~~l~~~~~-~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~--~~~~~~~ 222 (626)
.+|++++.+++.+++... ..+. ..+..+++.+.+.+.++++.||..++.+++.++...+..+ .+++..+
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~--------~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 455 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRT--------YYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGV 455 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHH--------HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHH
T ss_pred hHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence 999999999999987654 3322 3467889999999999999999999999999998765433 3456778
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhCc----cchhhhHHHHHHHHHhhccC--CChHHHHHHHhHHHHhhccCCcc
Q 006912 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP----SFLEPHLRNLFEYMLQVNKD--TDDDVALEACEFWHSYFEAQLPH 296 (626)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~l~~l~~~~~~~~~~--~~~~v~~~a~~~l~~l~~~~~~~ 296 (626)
++.++..+.++ +.+|..++.++..+++..+ ..+.+|++.+++.++..+.+ .++.+|..+++.+..+++. ..
T Consensus 456 l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~--~~ 532 (861)
T 2bpt_A 456 VQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEY--AT 532 (861)
T ss_dssp HHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH--cc
Confidence 88888888876 8999999999999988653 67889999999999988874 3478999999999998876 33
Q ss_pred hhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHH
Q 006912 297 ENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALD 376 (626)
Q Consensus 297 ~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~ 376 (626)
....+++..++|.++..+...-.-.... .. +++......+|..+..++.
T Consensus 533 ~~~~~~~~~l~~~l~~~l~~~~~~~~~i-----------------------------~~--~~~~~~~~~~~~~~~~~l~ 581 (861)
T 2bpt_A 533 DTVAETSASISTFVMDKLGQTMSVDENQ-----------------------------LT--LEDAQSLQELQSNILTVLA 581 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTSCGGG-----------------------------CC--HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccc-----------------------------CC--hhhHHHHHHHHHHHHHHHH
Confidence 4566778888887766543210000000 00 0000111246788999999
Q ss_pred HHHhhcCcc---hHHhHHHHHHHhhcCCCCCCh-hHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHH
Q 006912 377 VLSNVFGDE---ILPTLMPVIQAKLSASGDEAW-KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSI 452 (626)
Q Consensus 377 ~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~~-~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~ 452 (626)
.++...|.. ..+.+++.+...+++.+ + .+|+.++.+++.++...+..+.++++.++|.+...++++++.+|..
T Consensus 582 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~---~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~ 658 (861)
T 2bpt_A 582 AVIRKSPSSVEPVADMLMGLFFRLLEKKD---SAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSIT 658 (861)
T ss_dssp HHHHHCGGGTGGGHHHHHHHHHHHHHSTT---GGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHccCC---CCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 999998873 45678888888888877 7 8999999999999998888888999999999999999889999999
Q ss_pred HHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHh
Q 006912 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN--KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFG 530 (626)
Q Consensus 453 a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~ 530 (626)
++.+++.+++.++. ...+++..+++.+++.+.+++ +.+|..++.+++.++..+++.+.||++.+++.+...+.
T Consensus 659 a~~~l~~l~~~~~~-----~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~ 733 (861)
T 2bpt_A 659 AVGFIADISNSLEE-----DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQN 733 (861)
T ss_dssp HHHHHHHHHHHTGG-----GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhch-----hccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 99999999988764 367899999999999998764 88999999999999999999999999999999999887
Q ss_pred hh-----------hHHHHHHHHHHHHHHHHHhc---cccCChhhhhhhhHHHHHHHhcCCCC-CCc-cchHHHHHHHHHH
Q 006912 531 KY-----------QRRNLRIVYDAIGTLADAVG---FELNQPVYLDILMPPLIAKWQQLPNS-DKD-LFPLLECFTSIAQ 594 (626)
Q Consensus 531 ~~-----------~~~~~~~~~~~l~~i~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~-~~~~l~~~~~l~~ 594 (626)
.. ....+..++++++.++..++ ..+. +|++.+++.+...+...... +.. ...++.+++.+++
T Consensus 734 ~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~--~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 734 TKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF--PYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp CCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG--GGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH--HHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 42 12345689999999999887 3343 58888887776655410000 222 3588999999999
Q ss_pred Hh-ccccccchH-HHHHHHHHHHHH
Q 006912 595 AL-GAGFTQFAQ-PVFQRCINIIQT 617 (626)
Q Consensus 595 ~~-g~~f~~~~~-~i~~~l~~~l~~ 617 (626)
++ |..|.+|++ .+++.+++.+..
T Consensus 812 ~~~g~~~~~~~~~~~~~~ll~~l~~ 836 (861)
T 2bpt_A 812 MFPDGSIKQFYGQDWVIDYIKRTRS 836 (861)
T ss_dssp HCTTSTTGGGTTCHHHHHHHHHHHH
T ss_pred HcCCchHHHHHhcHHHHHHHHHHhh
Confidence 99 899999999 999999999885
No 15
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.8e-29 Score=281.82 Aligned_cols=537 Identities=13% Similarity=0.089 Sum_probs=418.3
Q ss_pred CCCC-CHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHHh------cCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 006912 6 AWQP-QEQGFNEICRLLEQ-QISPSSTADKSQIWQQLQQYS------QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKN 77 (626)
Q Consensus 6 ~~~~-~~~~~~~l~~~l~~-~~s~d~~~~r~~a~~~L~~~~------~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~ 77 (626)
.|.. +++....+.+.+-. +.+++.. +|+++...+..+. ..|+.++.+...+. +.++.+|..|...|..
T Consensus 79 ~w~~~~~~~~~~ik~~ll~~l~~~~~~-vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~---~~~~~~r~~al~~L~~ 154 (852)
T 4fdd_A 79 HFQNFPNGVTDFIKSECLNNIGDSSPL-IRATVGILITTIASKGELQNWPDLLPKLCSLLD---SEDYNTCEGAFGALQK 154 (852)
T ss_dssp SGGGCCHHHHHHHHHHHHTTTTCSSHH-HHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHS---CSSHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 4654 45556666554444 4456667 9999999998863 24566666766664 5678999999988887
Q ss_pred HHHHhhccCC----hhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcC---cCchHHHHHHHHHHhccCChhHHhH
Q 006912 78 NLRTAYKSMS----PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSNDINHMEG 150 (626)
Q Consensus 78 ~i~~~~~~l~----~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~---~~~~~~ll~~l~~~l~~~~~~~r~~ 150 (626)
.....-..+. ......+...+++++.+++..+|..+..+++.++...+ ...++++++.+.+.++++++.+|..
T Consensus 155 i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~ 234 (852)
T 4fdd_A 155 ICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKN 234 (852)
T ss_dssp HHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 6644211111 11246678888889999999999999999987775432 2456789999999999999999999
Q ss_pred HHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhcc--chHHHHhHHHHHHHHHH
Q 006912 151 AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM--PSALFVSMDQYLQGLFL 228 (626)
Q Consensus 151 ~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~--~~~~~~~~~~~l~~l~~ 228 (626)
++.+|..+++..+..+. .++..+++.+...+++.++.+|..|++++..+++.. ...+.+.+..+++.++.
T Consensus 235 a~~~L~~l~~~~~~~~~--------~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~ 306 (852)
T 4fdd_A 235 VCRALVMLLEVRMDRLL--------PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVN 306 (852)
T ss_dssp HHHHHHHHHHHCHHHHG--------GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHH--------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 99999999998887654 346789999999999999999999999999887642 22334556677777777
Q ss_pred hc-----------CC-----------CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHH
Q 006912 229 LS-----------ND-----------PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (626)
Q Consensus 229 ~~-----------~~-----------~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l 286 (626)
.+ +| .+..+|+.+..++..++...++. .++.+++.+...+.+.++.+|..|+..+
T Consensus 307 ~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~~l~~~l~~~l~~~~~~~R~aa~~al 383 (852)
T 4fdd_A 307 GMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLPHILPLLKELLFHHEWVVKESGILVL 383 (852)
T ss_dssp HTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 65 33 23457999999999999877653 4456788888888888999999999999
Q ss_pred HHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCcccccccc
Q 006912 287 HSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (626)
Q Consensus 287 ~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (626)
+.+++. ....+.++++.+++.++..+.+. .+.
T Consensus 384 g~i~~~--~~~~~~~~l~~~l~~l~~~l~d~----------------------------------------------~~~ 415 (852)
T 4fdd_A 384 GAIAEG--CMQGMIPYLPELIPHLIQCLSDK----------------------------------------------KAL 415 (852)
T ss_dssp HHTTTT--THHHHGGGHHHHHHHHHHHTTCS----------------------------------------------SHH
T ss_pred HHHHhc--chHHHHHHHHHHHHHHHHHcCCC----------------------------------------------CHH
Confidence 999886 44566788899999888776432 135
Q ss_pred HHHHHHHHHHHHHhhcCc----chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhc
Q 006912 367 LRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL 442 (626)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l 442 (626)
+|..+..+++.++...+. ..+..+++.+.+.+.+++ +.+|.+|+.+++.+++.+...+.++++.+++.++..+
T Consensus 416 Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~---~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l 492 (852)
T 4fdd_A 416 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN---KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF 492 (852)
T ss_dssp HHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHH
Confidence 899999999999887643 456788888888898888 9999999999999999888778899999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhcccccchHH
Q 006912 443 DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLK---RILDTNKRVQEAACSAFATLEEEAAEELAPRLE 519 (626)
Q Consensus 443 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~---~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~ 519 (626)
++.+......++.+++.++...+... ....|++.++|.+++ .+.|.++.++ .++.+++.++...|..+.||++
T Consensus 493 ~~~~~~~~~~~~~ai~~l~~~~~~~~---~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~ 568 (852)
T 4fdd_A 493 SKYQHKNLLILYDAIGTLADSVGHHL---NKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCE 568 (852)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHGGGG---CCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHhhhhh---ccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHH
Confidence 87777777778889999988776431 235688999998885 4556677775 7899999999999999999999
Q ss_pred HHHHHHHHHHhhh-----------------hHHHHHHHHHHHHHHHHHhccccCChhhh--hhhhHHHHHHHhcCCCCCC
Q 006912 520 IILQHLMMAFGKY-----------------QRRNLRIVYDAIGTLADAVGFELNQPVYL--DILMPPLIAKWQQLPNSDK 580 (626)
Q Consensus 520 ~i~~~l~~~l~~~-----------------~~~~~~~~~~~l~~i~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~ 580 (626)
.+++.++..+... +...+..++++++.+++.+|.++. +|+ +.+++.+...+.. ...
T Consensus 569 ~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~--~~~~~~~~~~~l~~~l~~---~~~ 643 (852)
T 4fdd_A 569 PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE--QLVARSNILTLMYQCMQD---KMP 643 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGH--HHHHTCCHHHHHHHHTTC---SSH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHH--HHhcCCcHHHHHHHHhCC---CCh
Confidence 9999877776542 123455889999999999998875 577 7888887776643 222
Q ss_pred c-cchHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Q 006912 581 D-LFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQT 617 (626)
Q Consensus 581 ~-~~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~~l~~ 617 (626)
. ...++.+++.+++.+|..|.||++.++|.+.+.+..
T Consensus 644 ~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~ 681 (852)
T 4fdd_A 644 EVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNP 681 (852)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCc
Confidence 3 358889999999999999999999999999988743
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=2.2e-30 Score=278.00 Aligned_cols=514 Identities=16% Similarity=0.114 Sum_probs=377.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc---CCChHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhhccCChh
Q 006912 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (626)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~---~p~~~~~l~~il~~~-~~~~~~~r~~a~~~l~~~i~~~~~~l~~~ 89 (626)
..++.+.|....+++.+ +|..+.+.|..+.. .++++..++.+|... .+.++.+|..|+..|.+.... ++++
T Consensus 47 ~~~l~~~L~~~~d~~~~-vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~----~~~~ 121 (588)
T 1b3u_A 47 RSELLPFLTDTIYDEDE-VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE----HSPS 121 (588)
T ss_dssp HHTHHHHHHHTCCCCHH-HHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTT----SCHH
T ss_pred HHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH----CCHH
Confidence 34455566555555555 77777777665432 222323233322111 145677777777777654432 2222
Q ss_pred -HHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhcccc
Q 006912 90 -NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (626)
Q Consensus 90 -~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~ 168 (626)
.+..+.+.+.....+++..+|..++.+++.++...+...++.++|.+.+.++++++.+|..++.+++.+++..+..
T Consensus 122 ~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--- 198 (588)
T 1b3u_A 122 DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--- 198 (588)
T ss_dssp HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---
Confidence 2233444444444566778888888888888776655667889999999999999999999999999998876642
Q ss_pred CCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006912 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (626)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l 248 (626)
.....++|.+...++|+++.+|..|+.++..+....++.. ..+.+++.+...++|+++.+|..++.++..+
T Consensus 199 -------~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l 269 (588)
T 1b3u_A 199 -------NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED--LEALVMPTLRQAAEDKSWRVRYMVADKFTEL 269 (588)
T ss_dssp -------HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH--HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHH
T ss_pred -------hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 2247788999999999999999999999999988766432 2334577777888899999999999999999
Q ss_pred HhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhc
Q 006912 249 IEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEE 328 (626)
Q Consensus 249 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~ 328 (626)
....+.. .+...+++.+...++|.++++|..+...+..+++.-.......++++.++|.+...+.+
T Consensus 270 ~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d------------ 335 (588)
T 1b3u_A 270 QKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD------------ 335 (588)
T ss_dssp HHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC------------
T ss_pred HHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC------------
Confidence 8764432 23456788888888999999999999999998876222111224566677766543321
Q ss_pred cCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcc-hHHhHHHHHHHhhcCCCCCChh
Q 006912 329 DESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE-ILPTLMPVIQAKLSASGDEAWK 407 (626)
Q Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~ 407 (626)
..|.+|..+..++..++..+|.. ..+.++|.+...+++++ +.
T Consensus 336 ----------------------------------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~---~~ 378 (588)
T 1b3u_A 336 ----------------------------------ANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDEC---PE 378 (588)
T ss_dssp ----------------------------------SCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSC---HH
T ss_pred ----------------------------------CCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCc---hH
Confidence 13679999999999999998873 45788899999999888 99
Q ss_pred HHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHH
Q 006912 408 DREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKR 487 (626)
Q Consensus 408 ~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~ 487 (626)
+|.+++.+++.+....+. ..+.+.++|.+...+.|+++++|..++.+++.++..++.. .+.+.+++.++..
T Consensus 379 Vr~~a~~~l~~l~~~~~~--~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-------~~~~~l~~~l~~~ 449 (588)
T 1b3u_A 379 VRLNIISNLDCVNEVIGI--RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE-------FFDEKLNSLCMAW 449 (588)
T ss_dssp HHHHHHTTCHHHHHHSCH--HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG-------GCCHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH-------HHHHHHHHHHHHH
Confidence 999999999999876542 2345678888888899999999999999999999877532 2335688999999
Q ss_pred hccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHH
Q 006912 488 ILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPP 567 (626)
Q Consensus 488 l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~ 567 (626)
+.|+++.||..|+.+++.++..+++. .+++.+++.+..+..+.+..++..++.+++.++..++.+ .|.+.++|.
T Consensus 450 l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~ 523 (588)
T 1b3u_A 450 LVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPT 523 (588)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHH
Confidence 99999999999999999999988764 246778888777776667778889999999999998865 478889988
Q ss_pred HHHHHhcCCCCCCcc-chHHHHHHHHHHHhccccccchHHHHHHHHHHH
Q 006912 568 LIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINII 615 (626)
Q Consensus 568 l~~~~~~~~~~~~~~-~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~~l 615 (626)
+...+.. ++++. ..++.+++.++..+|..+.+ +.++|.+.+++
T Consensus 524 l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~~~p~l~~l~ 567 (588)
T 1b3u_A 524 VLRMAGD---PVANVRFNVAKSLQKIGPILDNSTLQ--SEVKPILEKLT 567 (588)
T ss_dssp HHHGGGC---SCHHHHHHHHHHHHHHGGGSCHHHHH--HHHHHHHHHHT
T ss_pred HHhhCCC---CCchHHHHHHHHHHHHHHHhchhhhH--HHHHHHHHHHc
Confidence 8776542 33443 58889999999888876532 56666666643
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.98 E-value=4.8e-30 Score=275.37 Aligned_cols=514 Identities=12% Similarity=0.083 Sum_probs=394.1
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc--CC-ChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChh
Q 006912 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ--FP-DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (626)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~--~p-~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~ 89 (626)
.+..+..++..+.|+|.. +|..|.+.|..+.. .| ..+..++..|....+.++++|..++..|.+..... . .++
T Consensus 8 ~~~~i~~l~~~l~s~~~~-~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~-~--~~~ 83 (588)
T 1b3u_A 8 SLYPIAVLIDELRNEDVQ-LRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLV-G--GPE 83 (588)
T ss_dssp SSHHHHHHHHHTTCSCHH-HHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGG-T--SGG
T ss_pred CcCcHHHHHHHhhcccHH-HHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcc-C--cHH
Confidence 345678889999999999 99999999988543 22 12333444443322557799999988886432210 0 122
Q ss_pred HHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc-CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhcccc
Q 006912 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (626)
Q Consensus 90 ~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~-~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~ 168 (626)
....+...|...+.+++..+|..++.+++.++...++ ..++.++|.+.+...++++..|..++.+++.+....+..
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--- 160 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--- 160 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---
Confidence 3344555566666788999999999999999987643 345677888888888888999999999999988766542
Q ss_pred CCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006912 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (626)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l 248 (626)
....++|.+.+.++|+++.||..++++++.++...+... ..+.+++.+..+++|+++.+|..++.++..+
T Consensus 161 --------~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l 230 (588)
T 1b3u_A 161 --------VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN--VKSEIIPMFSNLASDEQDSVRLLAVEACVNI 230 (588)
T ss_dssp --------HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH--HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHH
T ss_pred --------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 247788999999999999999999999999998876532 2345688888888999999999999999999
Q ss_pred HhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhc
Q 006912 249 IEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEE 328 (626)
Q Consensus 249 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~ 328 (626)
.+..+.. ...+.+++.+.....+.++.+|..+++.++.+++... . ..+...+++.++..+.+.
T Consensus 231 ~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~-~---~~~~~~l~~~l~~~l~d~----------- 293 (588)
T 1b3u_A 231 AQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG-P---EITKTDLVPAFQNLMKDC----------- 293 (588)
T ss_dssp HHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC-H---HHHHHTHHHHHHHHHTCS-----------
T ss_pred HHhCCHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC-c---ccchhHHHHHHHHHhCCC-----------
Confidence 8876542 2345677777777889999999999999999876411 1 123345666665554321
Q ss_pred cCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcc-----hHHhHHHHHHHhhcCCCC
Q 006912 329 DESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE-----ILPTLMPVIQAKLSASGD 403 (626)
Q Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~-----~~~~l~~~l~~~l~~~~~ 403 (626)
.+.+|..+..++..++..++.. ..+.++|.+...+++++
T Consensus 294 -----------------------------------~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~- 337 (588)
T 1b3u_A 294 -----------------------------------EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN- 337 (588)
T ss_dssp -----------------------------------SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-
T ss_pred -----------------------------------cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC-
Confidence 1358999999999999998764 56789999999999998
Q ss_pred CChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHH
Q 006912 404 EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (626)
Q Consensus 404 ~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 483 (626)
|.+|.+++.+++.++..+++. ...+.++|.+...++|+++.||..++.+++.++..++. ..+.+.++|.
T Consensus 338 --~~vR~~a~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-------~~~~~~~lp~ 406 (588)
T 1b3u_A 338 --QHVKSALASVIMGLSPILGKD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-------RQLSQSLLPA 406 (588)
T ss_dssp --HHHHHHHHTTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-------HHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHH
Confidence 999999999999998766532 23566889999999999999999999999999886642 3456788899
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhh
Q 006912 484 LLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDI 563 (626)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~ 563 (626)
+.+.+.|+++.+|..++.+++.+++.++..+ +.+.+++.+...+.+.+..+++.++.+++.++..+|.+ .+.+.
T Consensus 407 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~ 480 (588)
T 1b3u_A 407 IVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE----WAHAT 480 (588)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHH
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHH
Confidence 9999999999999999999999999887653 34667888888888888888999999999999998875 35678
Q ss_pred hhHHHHHHHhcCCCCCCc-cchHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Q 006912 564 LMPPLIAKWQQLPNSDKD-LFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQ 618 (626)
Q Consensus 564 l~~~l~~~~~~~~~~~~~-~~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~~l~~~ 618 (626)
++|.+...+. +.+.. ...++.+++.++..+|..+ |.+.++|.+++.+++.
T Consensus 481 llp~l~~~~~---~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~ 531 (588)
T 1b3u_A 481 IIPKVLAMSG---DPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDP 531 (588)
T ss_dssp THHHHHHTTT---CSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCS
T ss_pred HHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCC
Confidence 8887764332 12222 3478899999999988754 7888888888877553
No 18
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.97 E-value=9.3e-29 Score=286.82 Aligned_cols=525 Identities=13% Similarity=0.111 Sum_probs=406.7
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhc--CCChHHHHHHHH-hhcCCCCHHHHHHHHHHHHHHHHHhhcc-----CChhHH
Q 006912 20 LLEQQISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFIL-ARAEGKSVEIRQAAGLLLKNNLRTAYKS-----MSPSNQ 91 (626)
Q Consensus 20 ~l~~~~s~d~~~~r~~a~~~L~~~~~--~p~~~~~l~~il-~~~~~~~~~~r~~a~~~l~~~i~~~~~~-----l~~~~~ 91 (626)
+++.+.+++.. +|++|...|..+.. .+..+..++..+ ..-.+.++.+|..|+..++......+.. ......
T Consensus 53 Ll~~L~d~~~~-vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~ 131 (1230)
T 1u6g_C 53 ILKLLEDKNGE-VQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVC 131 (1230)
T ss_dssp HHHHTTCSSHH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHH
T ss_pred HHHHhcCCCHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHH
Confidence 44445567777 99999999988754 222333333332 2212567789999999998766543221 112356
Q ss_pred HHHHHhHhhhhh-CCcHHHHHHHHHHHHHHHhhcC---cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccc
Q 006912 92 QYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (626)
Q Consensus 92 ~~i~~~L~~~l~-~~~~~vr~~~~~~l~~i~~~~~---~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~ 167 (626)
..+...|+..+. +++..+|..+..+++.++...+ ....+.+++.+...+.++++.+|..++.+++.++...++..
T Consensus 132 ~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~- 210 (1230)
T 1u6g_C 132 KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV- 210 (1230)
T ss_dssp HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-
Confidence 788888888888 4788999999999999996532 24568999999999999999999999999999998776432
Q ss_pred cCCCCCccchhhhhHHHHHHhcCCC-ChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006912 168 SDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (626)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~ 246 (626)
...+++.+++.+.+. +..+|..++++++.++...|..+.+++..+++.+...++++++++|..++.++.
T Consensus 211 ----------~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~ 280 (1230)
T 1u6g_C 211 ----------FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFE 280 (1230)
T ss_dssp ----------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 355677777766543 357889999999999998888887888889999999999889999999999999
Q ss_pred HHHhhCccchhhhHHHHHHHHHhhccC-------------------------------------CChHHHHHHHhHHHHh
Q 006912 247 LLIEVRPSFLEPHLRNLFEYMLQVNKD-------------------------------------TDDDVALEACEFWHSY 289 (626)
Q Consensus 247 ~l~~~~~~~~~~~l~~l~~~~~~~~~~-------------------------------------~~~~v~~~a~~~l~~l 289 (626)
.++...++.+.+|++.+++.++..+.. ..+.+|..|+..+..+
T Consensus 281 ~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l 360 (1230)
T 1u6g_C 281 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV 360 (1230)
T ss_dssp HHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHH
Confidence 999999998999999999988776531 0135788999999988
Q ss_pred hccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHH
Q 006912 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (626)
Q Consensus 290 ~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 369 (626)
+.. ....+.++++.++|.++..+.+.+ ..+|.
T Consensus 361 ~~~--~~~~~~~~~~~l~~~l~~~l~d~~----------------------------------------------~~Vr~ 392 (1230)
T 1u6g_C 361 VST--RHEMLPEFYKTVSPALISRFKERE----------------------------------------------ENVKA 392 (1230)
T ss_dssp HTT--CCTTHHHHHTTTHHHHHSTTSCSS----------------------------------------------SHHHH
T ss_pred HHh--chhHHHHHHHHHHHHHHHHcCCCc----------------------------------------------hHHHH
Confidence 874 344677888888888766553211 14788
Q ss_pred HHHHHHHHHHhhcCc----------------------chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccch
Q 006912 370 CSAAALDVLSNVFGD----------------------EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL 427 (626)
Q Consensus 370 ~a~~~l~~l~~~~~~----------------------~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~ 427 (626)
.+..++..+....+. ..++.+++.+.+.+++++ |.+|.+++.+++.++..+++.+
T Consensus 393 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~---~~vr~~~~~~L~~l~~~~~~~l 469 (1230)
T 1u6g_C 393 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS---VKTRQCCFNMLTELVNVLPGAL 469 (1230)
T ss_dssp HHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHHSTTTT
T ss_pred HHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHchhhh
Confidence 899888888776542 346778888888899888 9999999999999999887777
Q ss_pred hhhHHHHHHHHhhhcCCCch--HHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 006912 428 YPHLSEIVAFLIPLLDDKFP--LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFAT 505 (626)
Q Consensus 428 ~~~l~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~ 505 (626)
.++++.+++.++..+.|+++ .+|..++..++.+.+.... ....+++..++|.++..++|.++.|+..|+.+++.
T Consensus 470 ~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~----~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~ 545 (1230)
T 1u6g_C 470 TQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP----QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQ 545 (1230)
T ss_dssp GGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG----GGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCH----HHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 89999999999999999875 8888888888877764432 23567899999999999999999999999999999
Q ss_pred HHHHhcc-------cccchHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHhcCC
Q 006912 506 LEEEAAE-------ELAPRLEIILQHLMMAF--GKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLP 576 (626)
Q Consensus 506 l~~~~~~-------~~~~~l~~i~~~l~~~l--~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 576 (626)
+++.+++ .+.||++.+++.++..+ .+.+..++..++.+++.++...|..+. ++++.+++.+...+.+
T Consensus 546 l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~--~~~~~~l~~L~~~l~~-- 621 (1230)
T 1u6g_C 546 LVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLG--SDLPNTLQIFLERLKN-- 621 (1230)
T ss_dssp HHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCC--THHHHHHHHHHHHTTS--
T ss_pred HHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhh--hhHHHHHHHHHHHhcc--
Confidence 9998876 78899999999999999 444567788999999999999998875 5889999887776652
Q ss_pred CCCCccchHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHH
Q 006912 577 NSDKDLFPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQT 617 (626)
Q Consensus 577 ~~~~~~~~~l~~~~~l~~~~g~-~f~~~~~~i~~~l~~~l~~ 617 (626)
+.....++.+++.++...+. ++.+|++.+++.+.+.+.+
T Consensus 622 --e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~ 661 (1230)
T 1u6g_C 622 --EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRK 661 (1230)
T ss_dssp --SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTS
T ss_pred --chhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHh
Confidence 22223566666666654433 6778889999988877643
No 19
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.97 E-value=2.9e-27 Score=265.98 Aligned_cols=547 Identities=14% Similarity=0.130 Sum_probs=402.6
Q ss_pred HHHHHHhhc-CCCCHHHHHHHHHHHHHHhc-CC---------ChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh--
Q 006912 17 ICRLLEQQI-SPSSTADKSQIWQQLQQYSQ-FP---------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY-- 83 (626)
Q Consensus 17 l~~~l~~~~-s~d~~~~r~~a~~~L~~~~~-~p---------~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~-- 83 (626)
+.+.+.... ++|.+ +|..|.+.|..+.. .| .++..++..+ .+.++.+|..|..++........
T Consensus 218 il~~l~~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~v~~~al~~l~~l~~~~~~~ 293 (876)
T 1qgr_A 218 IMQVVCEATQCPDTR-VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM---KSDIDEVALQGIEFWSNVCDEEMDL 293 (876)
T ss_dssp HHHHHHHHTTCSSHH-HHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH---TCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHHHHhH
Confidence 444444443 45666 99999999988643 33 3334333333 26678999999877766554310
Q ss_pred ---------------ccCCh---hHHHHHHHhHhhhhh-------CCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHH
Q 006912 84 ---------------KSMSP---SNQQYIKSELLPCLG-------AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVT 138 (626)
Q Consensus 84 ---------------~~l~~---~~~~~i~~~L~~~l~-------~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~ 138 (626)
..... .....+...+++.+. +.++.+|..++.+++.++...+....+.+++.+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~ 373 (876)
T 1qgr_A 294 AIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKE 373 (876)
T ss_dssp HHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred hhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHH
Confidence 00000 112445556666664 24578999999999999987766678899999999
Q ss_pred HhccCChhHHhHHHHHHHHHhhhch-hccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHH--
Q 006912 139 CLDSNDINHMEGAMDALSKICEDIP-QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-- 215 (626)
Q Consensus 139 ~l~~~~~~~r~~~l~~l~~l~~~~~-~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~-- 215 (626)
.+.+++|.+|.+++.+++.+.+..+ +.+. .....++|.++..++|+++.||..|+.+++.++...+...
T Consensus 374 ~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~--------~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 445 (876)
T 1qgr_A 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLK--------PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN 445 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHHHH--------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred HccCCChHHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhccc
Confidence 9999999999999999999988665 3222 3467899999999999999999999999999998876542
Q ss_pred HHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCc--------------cchhhhHHHHHHHHHhhccCC---ChHH
Q 006912 216 FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP--------------SFLEPHLRNLFEYMLQVNKDT---DDDV 278 (626)
Q Consensus 216 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--------------~~~~~~l~~l~~~~~~~~~~~---~~~v 278 (626)
.+++..+++.++..+.++ +.++..++.++..++...+ +.+.+|++.+++.+...+.+. +..+
T Consensus 446 ~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~ 524 (876)
T 1qgr_A 446 DVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNL 524 (876)
T ss_dssp TTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTH
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhH
Confidence 456778899999988875 8899999999999987643 457899999999999887654 3578
Q ss_pred HHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCC
Q 006912 279 ALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDD 358 (626)
Q Consensus 279 ~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (626)
|..+++.+..++.. ......+++..+++.++..+...-. .. .....+
T Consensus 525 r~~~~~~l~~l~~~--~~~~~~~~~~~l~~~l~~~l~~~~~----~~--------------------------~~~~~~- 571 (876)
T 1qgr_A 525 RSSAYESLMEIVKN--SAKDCYPAVQKTTLVIMERLQQVLQ----ME--------------------------SHIQST- 571 (876)
T ss_dssp HHHHHHHHHHHHHT--CCSTTHHHHHHHHHHHHHHHHHHHT----TT--------------------------TSCCST-
T ss_pred HHHHHHHHHHHHHH--CchhhHHHHHHHHHHHHHHHHHHHH----HH--------------------------hccCCh-
Confidence 88899999998876 2234567778888877655432100 00 000000
Q ss_pred ccccccccHHHHHHHHHHHHHhhcC-c---chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHH
Q 006912 359 DDIVNVWNLRKCSAAALDVLSNVFG-D---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEI 434 (626)
Q Consensus 359 ~~~~~~~~~r~~a~~~l~~l~~~~~-~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l 434 (626)
+|......+|..+..++..++..+| . ..++.+++.+...+++..+ .+.+|+.++.+++.++...+..+.++++.+
T Consensus 572 ~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 650 (876)
T 1qgr_A 572 SDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG-SGGVQEDALMAVSTLVEVLGGEFLKYMEAF 650 (876)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccC-CCCccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 0000011357788899999999888 4 4467788888888877521 157899999999999998877788999999
Q ss_pred HHHHhhhcCCC-chHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHhc
Q 006912 435 VAFLIPLLDDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD--TNKRVQEAACSAFATLEEEAA 511 (626)
Q Consensus 435 ~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d--~~~~v~~~a~~al~~l~~~~~ 511 (626)
+|.+...+.+. ++.||..|+++++.++..++. ...+++..+++.+++.+.+ .+..+|..++.+++.++..+|
T Consensus 651 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g 725 (876)
T 1qgr_A 651 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS-----NIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 725 (876)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG-----GGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhc
Confidence 99999999886 899999999999999988764 3678899999999999986 357899999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhhhh-----------HHHHHHHHHHHHHHHHHhccc---------cCChhhhhhhhHHHHHH
Q 006912 512 EELAPRLEIILQHLMMAFGKYQ-----------RRNLRIVYDAIGTLADAVGFE---------LNQPVYLDILMPPLIAK 571 (626)
Q Consensus 512 ~~~~~~l~~i~~~l~~~l~~~~-----------~~~~~~~~~~l~~i~~~~~~~---------~~~~~~~~~l~~~l~~~ 571 (626)
+.+.+|++.+++.+...+.... ...+..++++++.++...+.. ... +|++.+++.+...
T Consensus 726 ~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~ 804 (876)
T 1qgr_A 726 GEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQ-PRVEFILSFIDHI 804 (876)
T ss_dssp GGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSG-GGHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHH-HHHHHHHHHHHHH
Confidence 9999999999999988876331 134557889999998887642 223 4888887655444
Q ss_pred HhcCCCCCCc-cchHHHHHHHHHHHhcc-ccccc-hHHHHHHHHH-HHHH
Q 006912 572 WQQLPNSDKD-LFPLLECFTSIAQALGA-GFTQF-AQPVFQRCIN-IIQT 617 (626)
Q Consensus 572 ~~~~~~~~~~-~~~~l~~~~~l~~~~g~-~f~~~-~~~i~~~l~~-~l~~ 617 (626)
+.. ...+.. ...++.|++.++...|. .+.+| .+.+++.+++ .+++
T Consensus 805 ~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~ 853 (876)
T 1qgr_A 805 AGD-EDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRS 853 (876)
T ss_dssp HTC-SCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHC
T ss_pred hcC-CCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhc
Confidence 332 100222 35889999999999999 88888 6788888888 6643
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.92 E-value=7.6e-22 Score=204.84 Aligned_cols=402 Identities=14% Similarity=0.140 Sum_probs=295.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCC--cHHHHHHHHHHHHHHHhhcC------
Q 006912 54 AFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLGG------ 125 (626)
Q Consensus 54 ~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~--~~~vr~~~~~~l~~i~~~~~------ 125 (626)
.++|..-.+.+..+|..|-..|++.-.. ........|+..+.+. +..+|..++..+.++++..+
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~--------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~ 75 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVE--------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ 75 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHH
Confidence 3444332366789999999988753221 1234455666767543 78999999999999985432
Q ss_pred ---------cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCC--Ch
Q 006912 126 ---------IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HT 194 (626)
Q Consensus 126 ---------~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~ 194 (626)
++.-..+...+.+.+.++++.+ ..+..+++.++...... ...++++|.+.+.++++ ++
T Consensus 76 ~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~----------~~w~~ll~~L~~~l~~~~~~~ 144 (462)
T 1ibr_B 76 YQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV----------NQWPELIPQLVANVTNPNSTE 144 (462)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG----------TCCTTHHHHHHHHHHCTTCCH
T ss_pred HHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc----------cccHHHHHHHHHHhccCCCCH
Confidence 1122345566777888877778 88888898888764321 12478999999999988 89
Q ss_pred HHHHHHHHHHHHHHhcc-chHHHHhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhCccchhhh--HHHHHHHHHh
Q 006912 195 SLRKLSLGSVNQFIMLM-PSALFVSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLEPH--LRNLFEYMLQ 269 (626)
Q Consensus 195 ~vr~~al~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~--l~~l~~~~~~ 269 (626)
.+|..++.++..+++.. +..+.++.+.+++.+...++++ +..+|..+++++..++......+... ...+++.+..
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 224 (462)
T 1ibr_B 145 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE 224 (462)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 99999999999999765 5556667778899999988887 78999999999998765433222111 1224555556
Q ss_pred hccCCChHHHHHHHhHHHHhhccCCcchhHHhhhh-hhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccC
Q 006912 270 VNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRL 348 (626)
Q Consensus 270 ~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~-~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 348 (626)
...+.+.++|..+++++..+++. ....+.+++. .+++.++..+...++
T Consensus 225 ~~~~~~~~vr~~~~~~l~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~----------------------------- 273 (462)
T 1ibr_B 225 ATQCPDTRVRVAALQNLVKIMSL--YYQYMETYMGPALFAITIEAMKSDID----------------------------- 273 (462)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHH--CGGGCTTTTTTTHHHHHHHHHHCSSH-----------------------------
T ss_pred hcCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCch-----------------------------
Confidence 67788899999999999999886 4455667788 888877655432211
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHhhc-------------------C-cc----hHHhHHHHHHHhhcCC---
Q 006912 349 HGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF-------------------G-DE----ILPTLMPVIQAKLSAS--- 401 (626)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~-------------------~-~~----~~~~l~~~l~~~l~~~--- 401 (626)
.+|..+...+..++... . .. .++.++|.+.+.+.+.
T Consensus 274 -----------------~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d 336 (462)
T 1ibr_B 274 -----------------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEN 336 (462)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccc
Confidence 25666776666665542 0 01 2356777777666542
Q ss_pred -CCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHH
Q 006912 402 -GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKV 480 (626)
Q Consensus 402 -~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l 480 (626)
++.+|..|.+|..+++.++..+++ ..++.++|.+...+.++++.+|.+|+.++|.+++.+.. ....+++..+
T Consensus 337 ~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~----~~~~~~l~~~ 409 (462)
T 1ibr_B 337 DDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP----SQLKPLVIQA 409 (462)
T ss_dssp CCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT----TTTCTTTTTH
T ss_pred cccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH----HHHHHHHHHH
Confidence 134499999999999999998763 55677899999999999999999999999999975431 1245677889
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHH
Q 006912 481 LMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL--APRLEIILQHLMMAF 529 (626)
Q Consensus 481 l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~--~~~l~~i~~~l~~~l 529 (626)
+|.++..+.|+++.||.+|+++|+++++.+++.+ .+|++.+++.|+..+
T Consensus 410 ~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 410 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998765 589999999887655
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.88 E-value=2.3e-19 Score=185.32 Aligned_cols=392 Identities=10% Similarity=0.069 Sum_probs=283.6
Q ss_pred HHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCch-----H-HHHHHHHHHhccC-ChhHHhHHHHHHHHHhhhchhccc
Q 006912 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW-----L-ELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLD 167 (626)
Q Consensus 95 ~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~-----~-~ll~~l~~~l~~~-~~~~r~~~l~~l~~l~~~~~~~~~ 167 (626)
...+++.+.++++.+|..++..+..++.......+ . +++|.+.+.+.++ ++.+|..++.+|..++...++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45677788888999999999999998763222211 1 6789999999988 889999999999999875443221
Q ss_pred cCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhH-HHHHHHHHHhcCC-CCHHHHHHHHHHH
Q 006912 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSND-PSAEVRKLVCAAF 245 (626)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~~~~~~~l 245 (626)
. -.-...+|.+.+.++++++.+|..|+.+|..+....+..-...+ ...++.+..++.+ ++..+|..++.+|
T Consensus 102 ~-------~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L 174 (450)
T 2jdq_A 102 I-------VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWAL 174 (450)
T ss_dssp H-------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred H-------HHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 0 01256899999999999999999999999999876543211111 1457888888874 7899999999999
Q ss_pred HHHHhhC-ccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhh-hhhhHHHHhhhcccCchhhhh
Q 006912 246 NLLIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEF-LPRLVPVLLSNMIYADDDESL 323 (626)
Q Consensus 246 ~~l~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-l~~li~~l~~~l~~~~~d~~~ 323 (626)
..++... +..-...+..+++.+...+.+.++.++..++..+..++... ....... -..+++.++..+...
T Consensus 175 ~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~ll~~~------ 246 (450)
T 2jdq_A 175 SNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP--NDKIQAVIDAGVCRRLVELLMHN------ 246 (450)
T ss_dssp HHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS--HHHHHHHHHTTTHHHHHHHTTCS------
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC--cHHHHHHHHcCcHHHHHHHHCCC------
Confidence 9999754 33222333566777777788888999999999999998752 1112111 134666666655421
Q ss_pred hhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---chH-HhHHHHHHHhhc
Q 006912 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLS 399 (626)
Q Consensus 324 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~ 399 (626)
.+.+|..+..++..++...+. .++ ..+++.+...+.
T Consensus 247 ----------------------------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 286 (450)
T 2jdq_A 247 ----------------------------------------DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS 286 (450)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT
T ss_pred ----------------------------------------chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc
Confidence 134788899999888765432 112 247888888999
Q ss_pred CCCCCChhHHHHHHHHHHHHHccCccchhhhH-HHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhH-
Q 006912 400 ASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF- 477 (626)
Q Consensus 400 ~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~- 477 (626)
+++ +.+|..++.+++.++.+..+.....+ ..++|.++..+.++++.||..|++++++++...... .....+
T Consensus 287 ~~~---~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~l~~ 359 (450)
T 2jdq_A 287 SPK---ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAE----QIKYLVE 359 (450)
T ss_dssp CSS---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHH----HHHHHHH
T ss_pred CCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH----HHHHHHH
Confidence 888 99999999999999987654443333 257888999999999999999999999998752111 112222
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcc-------cccchHHHH-----HHHHHHHHhhhhHHHHHHHHHHHH
Q 006912 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-------ELAPRLEII-----LQHLMMAFGKYQRRNLRIVYDAIG 545 (626)
Q Consensus 478 ~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~-------~~~~~l~~i-----~~~l~~~l~~~~~~~~~~~~~~l~ 545 (626)
..+++.++..+.++++.++..|+.+|.+++..... .+.+|...+ ++.+..+....+..+++.++.+|.
T Consensus 360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~ 439 (450)
T 2jdq_A 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIE 439 (450)
T ss_dssp HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35889999999998999999999999999986532 245666666 456666666656666667777766
Q ss_pred HHH
Q 006912 546 TLA 548 (626)
Q Consensus 546 ~i~ 548 (626)
.+.
T Consensus 440 ~~~ 442 (450)
T 2jdq_A 440 HYF 442 (450)
T ss_dssp HHH
T ss_pred HHC
Confidence 654
No 22
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.86 E-value=3.7e-18 Score=192.24 Aligned_cols=525 Identities=10% Similarity=0.109 Sum_probs=333.1
Q ss_pred CCCHHHHHHHHHHHHHH-hc--C--------C-Ch----HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhH
Q 006912 27 PSSTADKSQIWQQLQQY-SQ--F--------P-DF----NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN 90 (626)
Q Consensus 27 ~d~~~~r~~a~~~L~~~-~~--~--------p-~~----~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~ 90 (626)
.+.+ +|..|...|++. .+ . | +- -..++..+.. .+..+|..++..+.......|. +.
T Consensus 49 ~~~~-vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~---~~~~ir~~l~~~ia~ia~~d~p----~~ 120 (960)
T 1wa5_C 49 LPLS-TRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADSDFP----DR 120 (960)
T ss_dssp SCHH-HHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHST----TT
T ss_pred CCHH-HHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhCc----cc
Confidence 3556 999999999874 21 1 1 11 2234554543 3488999999999877765443 23
Q ss_pred HHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc-----CchH-------HHHHHHHH-------HhccCCh---hHH
Q 006912 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-----AGWL-------ELLQALVT-------CLDSNDI---NHM 148 (626)
Q Consensus 91 ~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~-----~~~~-------~ll~~l~~-------~l~~~~~---~~r 148 (626)
...+...|++.+++++...+..+..++..+++.... +.++ .+++.+.+ .++++.. .++
T Consensus 121 Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~ 200 (960)
T 1wa5_C 121 WPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLN 200 (960)
T ss_dssp CTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHH
T ss_pred hhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 445778888888877777788888899999875311 1122 22222222 2443322 122
Q ss_pred hHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCC------C---------hHHHHHHHHHHHHHHhccch
Q 006912 149 EGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP------H---------TSLRKLSLGSVNQFIMLMPS 213 (626)
Q Consensus 149 ~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~------~---------~~vr~~al~~l~~~~~~~~~ 213 (626)
.++.++..+++.+......+.+..+...+..+++.+.+.+... + .++|+.+++++..+++..++
T Consensus 201 -~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~ 279 (960)
T 1wa5_C 201 -ILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYED 279 (960)
T ss_dssp -HHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHH
T ss_pred -HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222110000011001123466666666665321 1 35789999999999988888
Q ss_pred HHHHhHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHhhC--ccchh--hhHHHHH-HHHHhhcc----C------
Q 006912 214 ALFVSMDQYLQGLFLLSN-----DPSAEVRKLVCAAFNLLIEVR--PSFLE--PHLRNLF-EYMLQVNK----D------ 273 (626)
Q Consensus 214 ~~~~~~~~~l~~l~~~~~-----~~~~~~~~~~~~~l~~l~~~~--~~~~~--~~l~~l~-~~~~~~~~----~------ 273 (626)
.+.++++.+++.+++.+. ..++.++..+++.+..+++.. ...++ +++..++ ..++..+. +
T Consensus 280 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~ 359 (960)
T 1wa5_C 280 VFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFED 359 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhc
Confidence 888888888887777653 346788999999999887643 24454 7788777 44443321 1
Q ss_pred -------------CChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCC
Q 006912 274 -------------TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (626)
Q Consensus 274 -------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~ 340 (626)
..+..|..|..++..++.. ..+. .++.+++.+...+.....
T Consensus 360 dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~--~~~~---v~~~~l~~i~~~l~~~~~--------------------- 413 (960)
T 1wa5_C 360 DPIEYIRRDLEGSDTDTRRRACTDFLKELKEK--NEVL---VTNIFLAHMKGFVDQYMS--------------------- 413 (960)
T ss_dssp CHHHHHHHHHHC----CHHHHHHHHHHHHHHH--CHHH---HHHHHHHHHHHHHHHHHC---------------------
T ss_pred CHHHHHHhccCcccccCcHHHHHHHHHHHHHH--cchh---HHHHHHHHHHHHHHHhcc---------------------
Confidence 1124688888888888876 2222 223333333222211000
Q ss_pred cccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc-----Cc-------chHHhHHHHHHHhhcCCCCCChhH
Q 006912 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF-----GD-------EILPTLMPVIQAKLSASGDEAWKD 408 (626)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~-----~~-------~~~~~l~~~l~~~l~~~~~~~~~~ 408 (626)
+....|..|.+|..+++.++... |. ++.+.+...+...++++++..+.+
T Consensus 414 -------------------~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~v 474 (960)
T 1wa5_C 414 -------------------DPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIIL 474 (960)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHH
T ss_pred -------------------CcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCcee
Confidence 01234889999999999998642 11 233333444555566662112999
Q ss_pred HHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHh------hhcCCCchhhhHHHHHH
Q 006912 409 REAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV------QDIGHQNGREQFEKVLM 482 (626)
Q Consensus 409 r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~~~~~~~~ll~ 482 (626)
|.++++++|.+++... .+++..+++.++..+.|+++.||.+|++++.++++... .........+|++.+++
T Consensus 475 r~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~ 551 (960)
T 1wa5_C 475 RVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLK 551 (960)
T ss_dssp HHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHH
T ss_pred hHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHH
Confidence 9999999999998753 35788899999999999999999999999999987421 00011246789999999
Q ss_pred HHHHHhccCC---HH--HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhh----hHHH-HHHHHHHHHHHHHHhc
Q 006912 483 GLLKRILDTN---KR--VQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY----QRRN-LRIVYDAIGTLADAVG 552 (626)
Q Consensus 483 ~l~~~l~d~~---~~--v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~----~~~~-~~~~~~~l~~i~~~~~ 552 (626)
.++..++... +. ....+..+++.+++..++.+.||++.+++.+...+... ++.. ...++++++.++.+.+
T Consensus 552 ~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~ 631 (960)
T 1wa5_C 552 NLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ 631 (960)
T ss_dssp HHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 9999987641 12 45688999999999999999999999999999888763 1222 3468999999999866
Q ss_pred cccCChhhhhhhhHHHHHHHhcCCCCCCccchHHHHHHHHHHHhccccccchHHHHHHHH
Q 006912 553 FELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCI 612 (626)
Q Consensus 553 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~ 612 (626)
++.. .++.+.++|.+...+++.. ..-..++++.++.+.... ..|.+|+..+++.+.
T Consensus 632 ~~~~-~~~~~~~~p~~~~iL~~~~--~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~ 687 (960)
T 1wa5_C 632 RQNL-PLLVDSMMPTFLTVFSEDI--QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLL 687 (960)
T ss_dssp GGGH-HHHHHHHHHHHHHHHHTTC--TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHT
T ss_pred cchH-HHHHHHHHHHHHHHHHhhh--HhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHc
Confidence 5443 2588899998888777432 111235777777776654 566666666665555
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.86 E-value=3.1e-19 Score=187.96 Aligned_cols=393 Identities=11% Similarity=0.110 Sum_probs=281.3
Q ss_pred HHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCch-----HHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhhchhcccc
Q 006912 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW-----LELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDS 168 (626)
Q Consensus 95 ~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~-----~~ll~~l~~~l~~~-~~~~r~~~l~~l~~l~~~~~~~~~~ 168 (626)
...++..|.++++.+|..++..+..++.......+ .+++|.+.+.+.++ ++.+|..++.+|+.++...++....
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 45677778888899999999999999865422222 35689999999987 8999999999999998754432110
Q ss_pred CCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhH-HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006912 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (626)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 247 (626)
-.-...+|.++..+.++++.+|..|+.+|..++...+..-.... ...++.+..++.++++.++..++.+|..
T Consensus 169 -------~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 169 -------VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 241 (530)
T ss_dssp -------HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred -------HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 01256788999999999999999999999999876433211111 2468888898888889999999999999
Q ss_pred HHhhC-ccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhh-hhHHHHhhhcccCchhhhhhh
Q 006912 248 LIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDDESLVE 325 (626)
Q Consensus 248 l~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~-~li~~l~~~l~~~~~d~~~~~ 325 (626)
++... +..-......+++.++..+.+.++.++..++.++..++.. ........+. .+++.++..+...
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~-------- 311 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHE-------- 311 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCS--------
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHHHCCC--------
Confidence 99765 3332334456777888888888999999999999999875 2222222332 5667766655421
Q ss_pred hhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---chH-HhHHHHHHHhhcCC
Q 006912 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSAS 401 (626)
Q Consensus 326 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~ 401 (626)
.+.+|..|..++..++...+. .++ ..+++.+..++.++
T Consensus 312 --------------------------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 353 (530)
T 1wa5_B 312 --------------------------------------STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP 353 (530)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred --------------------------------------ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC
Confidence 135788888898888754332 111 35778888999998
Q ss_pred CCCChhHHHHHHHHHHHHHccCccchhhhH-HHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhH--H
Q 006912 402 GDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--E 478 (626)
Q Consensus 402 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~ 478 (626)
+ |.+|..|+++++.++.+..+.....+ ..++|.++..+.++++.+|..|+++|+.++...... +....++ .
T Consensus 354 ~---~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~---~~~~~~l~~~ 427 (530)
T 1wa5_B 354 K---ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR---PDIIRYLVSQ 427 (530)
T ss_dssp C---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC---THHHHHHHHT
T ss_pred C---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHC
Confidence 8 99999999999999987654433333 246788888888899999999999999998764210 0012222 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcc-------cccchHHHH-----HHHHHHHHhhhhHHHHHHHHHHHHH
Q 006912 479 KVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-------ELAPRLEII-----LQHLMMAFGKYQRRNLRIVYDAIGT 546 (626)
Q Consensus 479 ~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~-------~~~~~l~~i-----~~~l~~~l~~~~~~~~~~~~~~l~~ 546 (626)
.+++.++..+.++++.++..|+.+|.+++..... ...+|...+ ++.|..+..+.+..+.+.+..+|..
T Consensus 428 ~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~ 507 (530)
T 1wa5_B 428 GCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 507 (530)
T ss_dssp TCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4788999999998999999999999999987632 234454443 4455555555555566666666655
Q ss_pred HH
Q 006912 547 LA 548 (626)
Q Consensus 547 i~ 548 (626)
+.
T Consensus 508 ~~ 509 (530)
T 1wa5_B 508 YF 509 (530)
T ss_dssp HS
T ss_pred HC
Confidence 44
No 24
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.86 E-value=3.9e-19 Score=188.69 Aligned_cols=437 Identities=16% Similarity=0.164 Sum_probs=300.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHh
Q 006912 20 LLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILAR-AEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSE 97 (626)
Q Consensus 20 ~l~~~~s~d~~~~r~~a~~~L~~~~~-~p~~~~~l~~il~~-~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~ 97 (626)
+++.+.|+|.. .|+.+.-++..+.+ +|+......+.+.. ..+.++.+|..|...+.+. ..++..+.+...
T Consensus 54 vi~l~~s~~~~-~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i-------~~~~~~~~l~~~ 125 (591)
T 2vgl_B 54 VVNCMQTDNLE-LKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI-------RVDKITEYLCEP 125 (591)
T ss_dssp HHHTTSSSCHH-HHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC-------CSGGGHHHHHHH
T ss_pred HHHHhCCCCHH-HHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC-------ChHHHHHHHHHH
Confidence 33444566666 77777777777644 56654444444432 2356777777776555322 256677778888
Q ss_pred HhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchH--HHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhc--cc---cCC
Q 006912 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWL--ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV--LD---SDV 170 (626)
Q Consensus 98 L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~--~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~--~~---~~~ 170 (626)
+..++.++++.||+.++.++..+++.. ++.++ ++++.+.+++.++++.++.+|+.+|+.++...++. +. ..+
T Consensus 126 l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~ 204 (591)
T 2vgl_B 126 LRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNI 204 (591)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHH
Confidence 889999999999999999999999865 56665 68999999999999999999999999998765421 00 000
Q ss_pred CCCc-------------------------cchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhcc---chHHHHhHHHH
Q 006912 171 PGLA-------------------------ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM---PSALFVSMDQY 222 (626)
Q Consensus 171 ~~~~-------------------------~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~---~~~~~~~~~~~ 222 (626)
..++ ......+++.+...+++.++.|+.+|++++..+.... ++.+......+
T Consensus 205 ~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~ 284 (591)
T 2vgl_B 205 NKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKL 284 (591)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHT
T ss_pred HHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 0000 0122456677777788888999999999999887543 23333333445
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhh
Q 006912 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEF 302 (626)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 302 (626)
.+.+..+. ++++++|..++.++..++...|+.+.+++..+ . +..+.+..+|..+++.+..++....
T Consensus 285 ~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~----~-~~~~d~~~Ir~~al~~L~~l~~~~n-------- 350 (591)
T 2vgl_B 285 APPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVF----F-VKYNDPIYVKLEKLDIMIRLASQAN-------- 350 (591)
T ss_dssp HHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT----S-CCTTSCHHHHHHHHHHHHHTCCSST--------
T ss_pred HHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhh----e-eccCChHHHHHHHHHHHHHHCChhh--------
Confidence 56666554 47899999999999999999998887765533 1 3334448899999999999886521
Q ss_pred hhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc
Q 006912 303 LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF 382 (626)
Q Consensus 303 l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~ 382 (626)
+..+++.+..++... ++.+|..+..++..++..+
T Consensus 351 v~~iv~~L~~~l~~~----------------------------------------------d~~~r~~~v~aI~~la~~~ 384 (591)
T 2vgl_B 351 IAQVLAELKEYATEV----------------------------------------------DVDFVRKAVRAIGRCAIKV 384 (591)
T ss_dssp HHHHHHHHHHHTTSS----------------------------------------------CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcC----------------------------------------------CHHHHHHHHHHHHHHHHhC
Confidence 233444444443321 1247888999999998887
Q ss_pred CcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcC-CCchHHHHHHHHHHHHHH
Q 006912 383 GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFS 461 (626)
Q Consensus 383 ~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~ 461 (626)
+. ....+++.+.+++++.. ..++..++.+++.+....++.. ..+++.+...+. +..+.+|.+++|++|+++
T Consensus 385 ~~-~~~~~v~~Ll~ll~~~~---~~v~~e~i~~l~~ii~~~p~~~----~~~v~~L~~~l~~~~~~~~~~~~~wilGey~ 456 (591)
T 2vgl_B 385 EQ-SAERCVSTLLDLIQTKV---NYVVQEAIVVIRDIFRKYPNKY----ESIIATLCENLDSLDEPDARAAMIWIVGEYA 456 (591)
T ss_dssp HH-HHHHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHSCSSC----CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTC
T ss_pred hh-HHHHHHHHHHHHHcccc---hHHHHHHHHHHHHHHHHCcchH----HHHHHHHHHHHHhccCHHHHHHHHHHHHccc
Confidence 53 34567788888888877 7788888888888877654322 223556666665 467899999999999998
Q ss_pred HHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH-hh-hhHHHHHH
Q 006912 462 KFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAF-GK-YQRRNLRI 539 (626)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l-~~-~~~~~~~~ 539 (626)
....+ ...++..+++.+.+.++.||..++.|+.++....++...+ .+..++... .+ .+.+++..
T Consensus 457 ~~~~~----------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~----~i~~ll~~~~~d~~d~evrdR 522 (591)
T 2vgl_B 457 ERIDN----------ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQE----LVQQVLSLATQDSDNPDLRDR 522 (591)
T ss_dssp TTCTT----------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHH----HHHHHHHHHHTTCCCHHHHHH
T ss_pred ccccC----------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHH----HHHHHHHHhhhcCCChHHHHH
Confidence 76542 2456666777777778999999999999998766543323 333334333 33 34577777
Q ss_pred HHHHHHHH
Q 006912 540 VYDAIGTL 547 (626)
Q Consensus 540 ~~~~l~~i 547 (626)
+.+.+..+
T Consensus 523 A~~y~~ll 530 (591)
T 2vgl_B 523 GYIYWRLL 530 (591)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHH
Confidence 77766555
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.85 E-value=7.6e-19 Score=181.48 Aligned_cols=398 Identities=13% Similarity=0.092 Sum_probs=283.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhc-cCChhHHH-HHHHhHhhhhhCC-cHHHHHHHHHHHHHHHhhcCc
Q 006912 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK-SMSPSNQQ-YIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGI 126 (626)
Q Consensus 50 ~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~-~l~~~~~~-~i~~~L~~~l~~~-~~~vr~~~~~~l~~i~~~~~~ 126 (626)
++.++..+. +.++.+|..|+..|++.+...+. .+...... .+.+.|++.|.++ ++.+|..++.+++.++.....
T Consensus 22 l~~l~~~l~---s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~ 98 (450)
T 2jdq_A 22 TSDMIEMIF---SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL 98 (450)
T ss_dssp CHHHHHHHH---SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 566777674 66889999999999987764332 11111122 5777888888877 899999999999999974311
Q ss_pred --Cc--hHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCC-CChHHHHHHH
Q 006912 127 --AG--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSL 201 (626)
Q Consensus 127 --~~--~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al 201 (626)
.. ..+.+|.+.+.+.++++.+|..++.+|+.++...+..... -.-..+++.+.+.+.+ .+..+|..++
T Consensus 99 ~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~-------~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 99 QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY-------VLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH-------HHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHH-------HHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 11 2468999999999999999999999999998865432110 0114678899999985 7899999999
Q ss_pred HHHHHHHhcc-chHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHHHhhccCCChHHH
Q 006912 202 GSVNQFIMLM-PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVA 279 (626)
Q Consensus 202 ~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~v~ 279 (626)
.++..++... |......+..+++.+..++.++++.++..++.+|..+....++...... ..+++.++..+.+.+++++
T Consensus 172 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 251 (450)
T 2jdq_A 172 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVV 251 (450)
T ss_dssp HHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHH
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHH
Confidence 9999999654 3222222345688888888888999999999999999876544332222 2466677777888899999
Q ss_pred HHHHhHHHHhhccCCcchhHHhhh-hhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCC
Q 006912 280 LEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDD 358 (626)
Q Consensus 280 ~~a~~~l~~l~~~~~~~~~~~~~l-~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (626)
..++..+..++... .......+ ..+++.++..+...
T Consensus 252 ~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~ll~~~----------------------------------------- 288 (450)
T 2jdq_A 252 SPALRAVGNIVTGD--DIQTQVILNCSALQSLLHLLSSP----------------------------------------- 288 (450)
T ss_dssp HHHHHHHHHHTTSC--HHHHHHHHTTTHHHHHHHHTTCS-----------------------------------------
T ss_pred HHHHHHHHHHhhCC--hHHHHHHHHCccHHHHHHHHcCC-----------------------------------------
Confidence 99999999998752 22222222 24666666555421
Q ss_pred ccccccccHHHHHHHHHHHHHhhcCc---chH-HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccC-ccchhhhH-H
Q 006912 359 DDIVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-IKGLYPHL-S 432 (626)
Q Consensus 359 ~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~-~~~~~~~l-~ 432 (626)
.+.+|..|..++..++..... .++ ..++|.+...+.+++ +.+|..++.+++.++.+. .+.....+ .
T Consensus 289 -----~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~l~~~ 360 (450)
T 2jdq_A 289 -----KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE---FRTRKEAAWAITNATSGGSAEQIKYLVEL 360 (450)
T ss_dssp -----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 135789999999988764322 122 357788888888888 999999999999998763 23222222 2
Q ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhc--CCCchhhhHHHH-----HHHHHHHhccCCHHHHHHHHHHHHH
Q 006912 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI--GHQNGREQFEKV-----LMGLLKRILDTNKRVQEAACSAFAT 505 (626)
Q Consensus 433 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~~~~l-----l~~l~~~l~d~~~~v~~~a~~al~~ 505 (626)
.+++.++..+.++++.||..|+++++.++....... +.....++...+ ++.+.....++++.|+..|..+|.+
T Consensus 361 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 440 (450)
T 2jdq_A 361 GCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440 (450)
T ss_dssp TCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999998654310 000112344444 5666666677788999999999998
Q ss_pred HHH
Q 006912 506 LEE 508 (626)
Q Consensus 506 l~~ 508 (626)
+..
T Consensus 441 ~~~ 443 (450)
T 2jdq_A 441 YFG 443 (450)
T ss_dssp HHC
T ss_pred HCC
Confidence 873
No 26
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.83 E-value=7.6e-17 Score=182.45 Aligned_cols=534 Identities=10% Similarity=0.074 Sum_probs=331.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-----CCChHHHHHHHHhhcC--C-CCHHHHHHHHHHHHHHHHH--hhc
Q 006912 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ-----FPDFNNYLAFILARAE--G-KSVEIRQAAGLLLKNNLRT--AYK 84 (626)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~-----~p~~~~~l~~il~~~~--~-~~~~~r~~a~~~l~~~i~~--~~~ 84 (626)
..+.+.+....++... +|++....+..+.+ .|+++..+...+..+. . .++..+..+..+|+..-.. .|.
T Consensus 85 ~~ll~~l~~~~~~~~~-vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~ 163 (971)
T 2x1g_F 85 QKILESIVRFAGGPKI-VLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIH 163 (971)
T ss_dssp HHHHHHHHHHTTSCHH-HHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccC
Confidence 4455555554433456 99999999888532 3444445555443210 0 1455677777666644321 222
Q ss_pred cCChhHH-----------HHHHHhHhhhhhC-Cc-------HHHHHHHHHHHHHHHhh--cCcCchHHHHHHHHHHhc--
Q 006912 85 SMSPSNQ-----------QYIKSELLPCLGA-AD-------RHIRSTVGTIVSVVVQL--GGIAGWLELLQALVTCLD-- 141 (626)
Q Consensus 85 ~l~~~~~-----------~~i~~~L~~~l~~-~~-------~~vr~~~~~~l~~i~~~--~~~~~~~~ll~~l~~~l~-- 141 (626)
....+ ..+...+...+.+ .+ ..++..+..++...+.. .+......+++.+.+ +.
T Consensus 164 --~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~ 240 (971)
T 2x1g_F 164 --TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHK 240 (971)
T ss_dssp --CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHH
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhh
Confidence 11111 2233333344432 11 26888888898887773 333455677887777 51
Q ss_pred --------------cCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHH-------hcCCCCh---HHH
Q 006912 142 --------------SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ-------FFQSPHT---SLR 197 (626)
Q Consensus 142 --------------~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~-------~l~~~~~---~vr 197 (626)
++++..|..++.++..++...... +. ...+..++|.++. ...+.+. ...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~---~~----~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~ 313 (971)
T 2x1g_F 241 CYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCH---NY----PKTAFVLIKMFLDSLSEITKTEWKRENDNEDII 313 (971)
T ss_dssp HHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGG---GC----HHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHH
T ss_pred hccccccccccccCcCCcHHHHHHHHHHHHHHcCcccc---cc----HHHHHHHHHHHHHhHHHHHHHHhcccccchHHH
Confidence 145688999999999998753211 00 1233445554443 2244453 677
Q ss_pred HHHHHHHHHHHhccchHHH-----------HhHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHhhC---------
Q 006912 198 KLSLGSVNQFIMLMPSALF-----------VSMDQYLQGLFLLSND-----PSAEVRKLVCAAFNLLIEVR--------- 252 (626)
Q Consensus 198 ~~al~~l~~~~~~~~~~~~-----------~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~l~~l~~~~--------- 252 (626)
...++.+..+++..+..+. +.+..+++.++..+.. .+++++..++.++..+++..
T Consensus 314 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~ 393 (971)
T 2x1g_F 314 VHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQK 393 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccch
Confidence 7778888777754333322 3455677777776533 46778999999998876521
Q ss_pred ---ccchhhhHHHHHHHHHhhccCC--------C-------hHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhc
Q 006912 253 ---PSFLEPHLRNLFEYMLQVNKDT--------D-------DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNM 314 (626)
Q Consensus 253 ---~~~~~~~l~~l~~~~~~~~~~~--------~-------~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l 314 (626)
...+.+++..+++.++..+.-+ + ...|..+.+++..++.. ... ..++.+++.+-..+
T Consensus 394 ~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~--~~~---~~l~~~~~~l~~~l 468 (971)
T 2x1g_F 394 HKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDV--LND---YILEILAAMLDEAI 468 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTT--CTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHH--HhH---HHHHHHHHHHHHHH
Confidence 1345677777777777655211 1 13567777777777654 221 22222232222211
Q ss_pred ccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---chHHhHH
Q 006912 315 IYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLM 391 (626)
Q Consensus 315 ~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~ 391 (626)
..... ....|..|.++..++..++..+.. ..++.++
T Consensus 469 ~~~~~-----------------------------------------~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~ 507 (971)
T 2x1g_F 469 ADLQR-----------------------------------------HPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLM 507 (971)
T ss_dssp HHHHH-----------------------------------------CTTCCHHHHHHHHHHHHTTTC------CHHHHHH
T ss_pred HhccC-----------------------------------------CCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHH
Confidence 10000 013488899999999999887754 4456666
Q ss_pred HHHHHhhc-CCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCC
Q 006912 392 PVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (626)
Q Consensus 392 ~~l~~~l~-~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (626)
+.+..... +++ +.+|..++.++|.+++..... ..+++.+++.++..+ | +.|+..|++++.++++.+...
T Consensus 508 ~~l~~l~~~d~~---~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~--- 577 (971)
T 2x1g_F 508 RVLAEIPYEKLN---VKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQ--- 577 (971)
T ss_dssp HHHHHSCTTTSC---HHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHH---
T ss_pred HHHHhcCccccC---HHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHh---
Confidence 64443332 345 999999999999999866433 268888999999888 4 889999999999999887654
Q ss_pred CchhhhHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhh----h--hH---HHHH
Q 006912 471 QNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAA-EELAPRLEIILQHLMMAFGK----Y--QR---RNLR 538 (626)
Q Consensus 471 ~~~~~~~~~ll~~l~~~l~d~--~~~v~~~a~~al~~l~~~~~-~~~~~~l~~i~~~l~~~l~~----~--~~---~~~~ 538 (626)
..+|++.++..+...+..+ +...+..+..+++.++...+ +...+|+..+++.+...+.. . +. ....
T Consensus 578 --l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~ 655 (971)
T 2x1g_F 578 --LKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTI 655 (971)
T ss_dssp --HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHH
T ss_pred --ccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 6789999999999998873 57889999999999998764 56667777766666655542 2 11 1223
Q ss_pred HHHHHHHHHHHHhccc------------cCChhhhhhhhHHHHHHHhcCCCCCCccchHHHHHHHHHHHhccccccchHH
Q 006912 539 IVYDAIGTLADAVGFE------------LNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQP 606 (626)
Q Consensus 539 ~~~~~l~~i~~~~~~~------------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~l~~~~g~~f~~~~~~ 606 (626)
.++.+|+.++..++.. .. .+|++.+++.+...++....++.-...++.+++.++..+|..|.||++.
T Consensus 656 ~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~ 734 (971)
T 2x1g_F 656 FRLNMISTLFSSLNTDVDEQATDQPIVQPV-LLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQD 734 (971)
T ss_dssp HHHHHHHHHHHHHTC-------------CC-HHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHH
T ss_pred HHHHHHHHHHhhcCCCcCcccccccCCCch-HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHH
Confidence 5677777777766532 11 2588899998887776543222223588899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 006912 607 VFQRCINIIQTQ 618 (626)
Q Consensus 607 i~~~l~~~l~~~ 618 (626)
+++.++..++++
T Consensus 735 ~~~~l~~~~~~~ 746 (971)
T 2x1g_F 735 LCLFIVASFQTR 746 (971)
T ss_dssp HHHHHHHHCC--
T ss_pred HHHHHHHHHhcC
Confidence 999998776653
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.83 E-value=1.8e-17 Score=174.48 Aligned_cols=390 Identities=11% Similarity=0.097 Sum_probs=280.5
Q ss_pred HHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCch-----HHHHHHHHHHhccCC-hhHHhHHHHHHHHHhhhchhcccc
Q 006912 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW-----LELLQALVTCLDSND-INHMEGAMDALSKICEDIPQVLDS 168 (626)
Q Consensus 95 ~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~-----~~ll~~l~~~l~~~~-~~~r~~~l~~l~~l~~~~~~~~~~ 168 (626)
.+.|+..|.++++.+|..++..++.++........ .+++|.|.+.+.+++ +.+|..++.+|+.++...++....
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 45677778888999999999999999876532222 356899999999876 899999999999998864432210
Q ss_pred CCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHH--HHHHHHHHhc-CCCCHHHHHHHHHHH
Q 006912 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLS-NDPSAEVRKLVCAAF 245 (626)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~-~~~~~~~~~~~~~~l 245 (626)
-.-...+|.++..+.++++.+|..|+.+|..++...+.. ...+. ..++.++.++ .++++.++..++.+|
T Consensus 156 -------~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~-~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L 227 (528)
T 4b8j_A 156 -------VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC-RDLVLANGALLPLLAQLNEHTKLSMLRNATWTL 227 (528)
T ss_dssp -------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH-HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHH
T ss_pred -------HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh-HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 112468999999999999999999999999998654322 22221 3578888888 677899999999999
Q ss_pred HHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhh-hhhHHHHhhhcccCchhhhhh
Q 006912 246 NLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLV 324 (626)
Q Consensus 246 ~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l-~~li~~l~~~l~~~~~d~~~~ 324 (626)
..++...+..-......+++.+...+.+.+.+++..++..+..++.. ........+ ..+++.++..+...+
T Consensus 228 ~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~v~~Lv~lL~~~~------ 299 (528)
T 4b8j_A 228 SNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLLHPS------ 299 (528)
T ss_dssp HHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CHHHHHHHHHTTCHHHHHHHTTCSC------
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCHHHHHHHHHcCCC------
Confidence 99998765443344567788888888899999999999999999875 222222222 246666666554321
Q ss_pred hhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---chH-HhHHHHHHHhhcC
Q 006912 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSA 400 (626)
Q Consensus 325 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~ 400 (626)
+.++..|..+|..++...+. .++ ..+++.+...+.+
T Consensus 300 ----------------------------------------~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~ 339 (528)
T 4b8j_A 300 ----------------------------------------PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ 339 (528)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS
T ss_pred ----------------------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC
Confidence 24788888999888764332 111 3467888888888
Q ss_pred C-CCCChhHHHHHHHHHHHHHccCccchhhhHH-HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhH-
Q 006912 401 S-GDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF- 477 (626)
Q Consensus 401 ~-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~- 477 (626)
+ + +.+|..|+++++.++.+..+.....+. .++|.++..+.+.++.+|..|+++|+.++..... ....++
T Consensus 340 ~~~---~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~-----~~~~~l~ 411 (528)
T 4b8j_A 340 NLK---KSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSH-----DQIKYLV 411 (528)
T ss_dssp CCC---HHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCH-----HHHHHHH
T ss_pred CCc---HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH-----HHHHHHH
Confidence 7 7 999999999999999865433322222 4678888888888999999999999999976211 122333
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcc-------cccchHHHH-----HHHHHHHHhhhhHHHHHHHHHHH
Q 006912 478 -EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-------ELAPRLEII-----LQHLMMAFGKYQRRNLRIVYDAI 544 (626)
Q Consensus 478 -~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~-------~~~~~l~~i-----~~~l~~~l~~~~~~~~~~~~~~l 544 (626)
..+++.++..+.++++.++..++.+|.+++..... ...+|...+ ++.+..+....+..+.+.+..++
T Consensus 412 ~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il 491 (528)
T 4b8j_A 412 SEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKIL 491 (528)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35788999999999999999999999999976532 333444433 33444444445556666666666
Q ss_pred HHHH
Q 006912 545 GTLA 548 (626)
Q Consensus 545 ~~i~ 548 (626)
..+.
T Consensus 492 ~~~~ 495 (528)
T 4b8j_A 492 EAYW 495 (528)
T ss_dssp HHHC
T ss_pred HHHC
Confidence 6554
No 28
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.82 E-value=3.2e-17 Score=173.93 Aligned_cols=463 Identities=12% Similarity=0.109 Sum_probs=285.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHh-cC---CChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHH
Q 006912 17 ICRLLEQQISPSSTADKSQIWQQLQQYS-QF---PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (626)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~-~~---p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~ 92 (626)
+.++-+.+.|+|.. .|+.+-..+.-+. .. +.+...++.++ .+.+..+|+.+...+++.... .++...
T Consensus 15 ~~~i~~~L~~~~~~-~k~~~~~kli~~~~~G~d~~~~~~~vi~l~---~s~~~~~Krl~yl~l~~~~~~-----~~e~~~ 85 (591)
T 2vgl_B 15 IFELKAELNNEKKE-KRKEAVKKVIAAMTVGKDVSSLFPDVVNCM---QTDNLELKKLVYLYLMNYAKS-----QPDMAI 85 (591)
T ss_dssp HHHHHHHTTSSCHH-HHHHHHHHHHHHHHTTCCCGGGHHHHHHTT---SSSCHHHHHHHHHHHHHHHHH-----SHHHHH
T ss_pred HHHHHHHHcCCCHH-HHHHHHHHHHHHHHCCCChHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccc-----CchHHH
Confidence 33444444577877 8888777776542 22 22334444433 278899999999999865442 345555
Q ss_pred HHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCC
Q 006912 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (626)
Q Consensus 93 ~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~ 172 (626)
.+.+.+.+.++++++.+|..+..+++.+. .+..++.+++.+.+++.++++.+|..|+.++..++...++.+.
T Consensus 86 l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~----- 157 (591)
T 2vgl_B 86 MAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE----- 157 (591)
T ss_dssp TTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH-----
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc-----
Confidence 56677788888999999988776666554 5678899999999999999999999999999999986554321
Q ss_pred CccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchH-HHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 006912 173 LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA-LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (626)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (626)
-..+++.+.+.+.|+++.|+..|+.+|..+....|+. ........++.+++.+.+.++..+...++++..+...
T Consensus 158 -----~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~ 232 (591)
T 2vgl_B 158 -----DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK 232 (591)
T ss_dssp -----HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC
T ss_pred -----cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC
Confidence 1368899999999999999999999999998765533 2222334455566655666777777777766554432
Q ss_pred CccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccC-CcchhHHhhhhhhHHHHhhhcccCchhhhhh------
Q 006912 252 RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-LPHENLKEFLPRLVPVLLSNMIYADDDESLV------ 324 (626)
Q Consensus 252 ~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~------ 324 (626)
.+ .....+++.+...+++.+..|+..|+.++..+.... ...+.++....++.+.++..+. .+.++...
T Consensus 233 ~~----~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 233 DD----REAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp SH----HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred Ch----HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 22 334578888888889999999999999999987531 1223344445566665554332 22221110
Q ss_pred ---hhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCC
Q 006912 325 ---EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSAS 401 (626)
Q Consensus 325 ---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~ 401 (626)
...++-. ..+++.++. .. .+.+++|..+.+.+..++ .+.-+..+++.+..++.+.
T Consensus 308 ~i~~~~p~~~----~~~~~~~~~---------~~------~d~~~Ir~~al~~L~~l~---~~~nv~~iv~~L~~~l~~~ 365 (591)
T 2vgl_B 308 LIVQKRPEIL----KQEIKVFFV---------KY------NDPIYVKLEKLDIMIRLA---SQANIAQVLAELKEYATEV 365 (591)
T ss_dssp HHHHHCCSTT----TTCTTTTSC---------CT------TSCHHHHHHHHHHHHHTC---CSSTHHHHHHHHHHHTTSS
T ss_pred HHHHhChHHH----HHHHHhhee---------cc------CChHHHHHHHHHHHHHHC---ChhhHHHHHHHHHHHHhcC
Confidence 0001000 001111100 00 001346666554444332 2333455666666666666
Q ss_pred CCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHH
Q 006912 402 GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481 (626)
Q Consensus 402 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll 481 (626)
+ +..|..++.+++.++... .+.....++.++..+.+....|+..++.+++.+....+ .....++
T Consensus 366 d---~~~r~~~v~aI~~la~~~----~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p---------~~~~~~v 429 (591)
T 2vgl_B 366 D---VDFVRKAVRAIGRCAIKV----EQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP---------NKYESII 429 (591)
T ss_dssp C---HHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC---------SSCCTTH
T ss_pred C---HHHHHHHHHHHHHHHHhC----hhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc---------chHHHHH
Confidence 6 777777777777776653 24456667777777777777777766666666654432 1124456
Q ss_pred HHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 006912 482 MGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (626)
Q Consensus 482 ~~l~~~l~d-~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~ 549 (626)
+.+...+.+ ..+.++..+++.++.+.....+ .+.+++.+.+.+...+..++..++.++..+..
T Consensus 430 ~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 430 ATLCENLDSLDEPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFHDESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp HHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 666666653 3566677777777665433321 23444444433333344555566666666654
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.82 E-value=5.9e-18 Score=178.18 Aligned_cols=402 Identities=13% Similarity=0.103 Sum_probs=285.7
Q ss_pred CChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh-hccCChhHHHHHHHhHhhhhhCC-cHHHHHHHHHHHHHHHhhc
Q 006912 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA-YKSMSPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLG 124 (626)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~-~~~l~~~~~~~i~~~L~~~l~~~-~~~vr~~~~~~l~~i~~~~ 124 (626)
.+.++.++..|. +.++.+|..|+..|++.+... -..+..-....+.+.|+..|.++ ++.+|..++.+++.++...
T Consensus 86 ~~~i~~lv~~L~---s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 86 QQELPQMTQQLN---SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp -CCHHHHHHHHS---CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 345677777775 557899999999998776431 01111112234567788888876 8999999999999998743
Q ss_pred Cc--Cch--HHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHH
Q 006912 125 GI--AGW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLS 200 (626)
Q Consensus 125 ~~--~~~--~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~a 200 (626)
.. ..+ .+.++.+.+.+.++++.+|..++.+|+.++...+..-.. -....+++.++..+.+++..++..|
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~-------~~~~~~l~~L~~ll~~~~~~v~~~a 235 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY-------VLQCNAMEPILGLFNSNKPSLIRTA 235 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH-------HHHTTCHHHHHHGGGSCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH-------HHHcCcHHHHHHHhccCCHHHHHHH
Confidence 11 111 356889999999999999999999999998764332110 1124678999999999999999999
Q ss_pred HHHHHHHHhcc-chHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhccCCChHH
Q 006912 201 LGSVNQFIMLM-PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDV 278 (626)
Q Consensus 201 l~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v 278 (626)
+.+|..++... |.........+++.+..++.++++.++..++.+|..++...++.....+. .+++.++..+.+.++.+
T Consensus 236 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v 315 (530)
T 1wa5_B 236 TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV 315 (530)
T ss_dssp HHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhh
Confidence 99999999664 32222334466888999999999999999999999999776654443333 56777788888889999
Q ss_pred HHHHHhHHHHhhccCCcchhHHhhh-hhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCC
Q 006912 279 ALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (626)
Q Consensus 279 ~~~a~~~l~~l~~~~~~~~~~~~~l-~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (626)
+..|+.++..++.. ........+ ..+++.++..+...
T Consensus 316 ~~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~L~~lL~~~---------------------------------------- 353 (530)
T 1wa5_B 316 QTPALRAVGNIVTG--NDLQTQVVINAGVLPALRLLLSSP---------------------------------------- 353 (530)
T ss_dssp HHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCS----------------------------------------
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHcchHHHHHHHHcCC----------------------------------------
Confidence 99999999999865 222222222 25666666655421
Q ss_pred CccccccccHHHHHHHHHHHHHhhcCc---chH-HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCcc--chhhhH
Q 006912 358 DDDIVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK--GLYPHL 431 (626)
Q Consensus 358 ~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~--~~~~~l 431 (626)
.+.+|..|..+|..++...+. .++ ..+++.+...+.+++ +.+|..++.+|+.++.+... ....++
T Consensus 354 ------~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~aL~~l~~~~~~~~~~~~~l 424 (530)
T 1wa5_B 354 ------KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE---YKTKKEACWAISNASSGGLQRPDIIRYL 424 (530)
T ss_dssp ------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHTTTCTHHHHHH
T ss_pred ------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC---HHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 135889999999998764322 111 346777888888888 99999999999999886432 222233
Q ss_pred HH--HHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcC--CCchhhhHHH-----HHHHHHHHhccCCHHHHHHHHHH
Q 006912 432 SE--IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG--HQNGREQFEK-----VLMGLLKRILDTNKRVQEAACSA 502 (626)
Q Consensus 432 ~~--l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~~~~~-----ll~~l~~~l~d~~~~v~~~a~~a 502 (626)
.. +++.++..+.++++.||..++++|+.+......... .....++... .++.+.....++++.|+..|..+
T Consensus 425 ~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~i 504 (530)
T 1wa5_B 425 VSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 504 (530)
T ss_dssp HHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 22 788899999999999999999999999976543100 0001222222 36667777778899999999999
Q ss_pred HHHHHHH
Q 006912 503 FATLEEE 509 (626)
Q Consensus 503 l~~l~~~ 509 (626)
|.+++..
T Consensus 505 l~~~~~~ 511 (530)
T 1wa5_B 505 IETYFGE 511 (530)
T ss_dssp HHHHSSS
T ss_pred HHHHCCc
Confidence 9988754
No 30
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.81 E-value=4.3e-16 Score=176.42 Aligned_cols=534 Identities=13% Similarity=0.098 Sum_probs=337.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc------CCChHHHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHhhc-c
Q 006912 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ------FPDFNNYLAFILARAE--GKSVEIRQAAGLLLKNNLRTAYK-S 85 (626)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~------~p~~~~~l~~il~~~~--~~~~~~r~~a~~~l~~~i~~~~~-~ 85 (626)
..+.+.+....++... +|++....+..+.+ .|+++..+...+.... ..++..+..+..+|+........ .
T Consensus 103 ~~ll~~l~~~~~~~~~-ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~ 181 (963)
T 2x19_B 103 AQLFTQITRFASGSKI-VLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSR 181 (963)
T ss_dssp HHHHHHHHHTTTSCHH-HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhccc
Confidence 3455555543323456 89999988887532 4556666666553200 02455666666666644322110 0
Q ss_pred CC-----------hhHHHHHHHhHhhhhhCC--cHHHHHHHHHHHHHHHhhc-CcCchHHHHHHHHHHhccCChhHHhHH
Q 006912 86 MS-----------PSNQQYIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGA 151 (626)
Q Consensus 86 l~-----------~~~~~~i~~~L~~~l~~~--~~~vr~~~~~~l~~i~~~~-~~~~~~~ll~~l~~~l~~~~~~~r~~~ 151 (626)
.+ ......+...+...+.+. +..++..+..++...+... ....++.+++.+.+.+. ++..+..+
T Consensus 182 ~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~~~~~~a 259 (963)
T 2x19_B 182 LPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DSELFDSS 259 (963)
T ss_dssp C---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--STTTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--CchHHHHH
Confidence 11 122344555555566433 2247777777776665532 12345889999998884 56789999
Q ss_pred HHHHHHHhhhchhccccCCCCCccchhhhhHHHHHH-------hcCCCChHHHHHHHHHHHHHHhccchHHH------Hh
Q 006912 152 MDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ-------FFQSPHTSLRKLSLGSVNQFIMLMPSALF------VS 218 (626)
Q Consensus 152 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~-------~l~~~~~~vr~~al~~l~~~~~~~~~~~~------~~ 218 (626)
+.++..++........ ...+..+++.++. .+.+.+.......++.+..+++..+..+. +.
T Consensus 260 ~~~l~~i~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ 332 (963)
T 2x19_B 260 VEAIVNAISQPDAQRY-------VNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQS 332 (963)
T ss_dssp HHHHHHHHTCTTGGGC-------HHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHcccccccC-------HHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHH
Confidence 9999999875321100 1223344443333 23344556666677777777755443332 44
Q ss_pred HHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHhhC-----------ccchhhhHHHHHHHHHhhccCCCh------
Q 006912 219 MDQYLQGLFLLSND-----PSAEVRKLVCAAFNLLIEVR-----------PSFLEPHLRNLFEYMLQVNKDTDD------ 276 (626)
Q Consensus 219 ~~~~l~~l~~~~~~-----~~~~~~~~~~~~l~~l~~~~-----------~~~~~~~l~~l~~~~~~~~~~~~~------ 276 (626)
+..+++.+.....+ .++++...++..+..+++.. ...+.+++..+++.++..+..+++
T Consensus 333 ~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~ 412 (963)
T 2x19_B 333 FLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFW 412 (963)
T ss_dssp HHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCC
Confidence 55677777776654 35567788888888877621 234567777777777665532111
Q ss_pred ---------HHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCccccccc
Q 006912 277 ---------DVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSR 347 (626)
Q Consensus 277 ---------~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~ 347 (626)
+.|..+.+++..++.. ... ..++.+++.+...+..
T Consensus 413 ~~de~~~~~~~r~~~~~~L~~~~~~--~~~---~~l~~~~~~l~~~l~~------------------------------- 456 (963)
T 2x19_B 413 SSDEKEQFRIYRVDISDTLMYVYEM--LGA---ELLSNLYDKLGRLLTS------------------------------- 456 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH--HTH---HHHHHHHHHHHHHHHT-------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH--ccH---HHHHHHHHHHHHHHHh-------------------------------
Confidence 2245555666555543 111 1222222222111110
Q ss_pred CCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc
Q 006912 348 LHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (626)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~ 424 (626)
.. ....|..+.++..+++.++..+.. ..++.+++.+.. +.+++ +.+|..++.++|.+++...
T Consensus 457 ------~~-----~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~---~~vr~~~~~~l~~~~~~l~ 521 (963)
T 2x19_B 457 ------SE-----EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISN---VQLADTVMFTIGALSEWLA 521 (963)
T ss_dssp ------CC-----CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCS---HHHHHHHHHHHHHTHHHHH
T ss_pred ------cC-----CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCc---HHHHHHHHHHHHHHHHHHH
Confidence 00 122488899999999999988754 345555554432 23345 8999999999999987654
Q ss_pred cchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhcc--CCHHHHHHHHHH
Q 006912 425 KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD--TNKRVQEAACSA 502 (626)
Q Consensus 425 ~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d--~~~~v~~~a~~a 502 (626)
.. .++++.+++.++..+.+ +.|+..|++++.++++.+.. ...+|++.++..+...+.. -+...+..+..+
T Consensus 522 ~~-~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~-----~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~ea 593 (963)
T 2x19_B 522 DH-PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKY-----DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQA 593 (963)
T ss_dssp HC-HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG-----GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hC-HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 32 26777888888888866 88999999999999987764 3678999999999988875 357889999999
Q ss_pred HHHHHHHhc-ccccchHHHHHHHHHHHHhhh-----hHH---HHHHHHHHHHHHHHHhccccC-----------------
Q 006912 503 FATLEEEAA-EELAPRLEIILQHLMMAFGKY-----QRR---NLRIVYDAIGTLADAVGFELN----------------- 556 (626)
Q Consensus 503 l~~l~~~~~-~~~~~~l~~i~~~l~~~l~~~-----~~~---~~~~~~~~l~~i~~~~~~~~~----------------- 556 (626)
++.++...+ +...+|+..+++.+...+... +.+ ....++++|+.+++.++....
T Consensus 594 i~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (963)
T 2x19_B 594 LGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQG 673 (963)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------C
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCC
Confidence 999998775 677889999988887766531 122 223688999999998864210
Q ss_pred -C--hhhhhhhhHHHHHHHhcCCCCCCccchHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Q 006912 557 -Q--PVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQT 617 (626)
Q Consensus 557 -~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~~l~~ 617 (626)
. .++++.+++.+...++....+......++.++..++..+|..|.||++++++.++..+.+
T Consensus 674 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 737 (963)
T 2x19_B 674 PNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYST 737 (963)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHc
Confidence 0 136777888777666643322222347778899999999999999999999998887765
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.79 E-value=3e-17 Score=172.92 Aligned_cols=362 Identities=15% Similarity=0.092 Sum_probs=261.3
Q ss_pred HHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCC-hHHHHHHHHHHHHHHh
Q 006912 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGSVNQFIM 209 (626)
Q Consensus 131 ~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vr~~al~~l~~~~~ 209 (626)
+-+|.+.+.+.++++.++..|+..|..++......... .-.-..++|.+++.+.+++ +.+|..|+.+|..+..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~------~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~ 147 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIE------EVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIAS 147 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHH------HHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHH------HHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 34788889999999999999999999987654311000 0123578999999999886 8999999999999987
Q ss_pred ccchHHHHhHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhc-cCCChHHHHHHHhHH
Q 006912 210 LMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVN-KDTDDDVALEACEFW 286 (626)
Q Consensus 210 ~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~-~~~~~~v~~~a~~~l 286 (626)
..+......+. ..++.++.++.++++.++..++.+|..++...+..-...+. ..++.++..+ .+.+..++..++.++
T Consensus 148 ~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L 227 (528)
T 4b8j_A 148 GTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTL 227 (528)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 64433222222 46889999999999999999999999998765432211111 3566666776 567889999999999
Q ss_pred HHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCcccccccc
Q 006912 287 HSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (626)
Q Consensus 287 ~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (626)
..++..... ........+++.++..+...+ +.
T Consensus 228 ~~L~~~~~~--~~~~~~~~~l~~L~~lL~~~~----------------------------------------------~~ 259 (528)
T 4b8j_A 228 SNFCRGKPQ--PSFEQTRPALPALARLIHSND----------------------------------------------EE 259 (528)
T ss_dssp HHHHCSSSC--CCHHHHTTHHHHHHHHTTCCC----------------------------------------------HH
T ss_pred HHHHcCCCC--CcHHHHHHHHHHHHHHHCCCC----------------------------------------------HH
Confidence 999886311 122334667777766654221 23
Q ss_pred HHHHHHHHHHHHHhhcCcc---h-HHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH-HHHHHHHhhh
Q 006912 367 LRKCSAAALDVLSNVFGDE---I-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPL 441 (626)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~---~-~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~l~~~ 441 (626)
++..+..+|..++...+.. + -..+++.+...+.+++ +.++..|+.+|+.++.+........+ ..++|.++..
T Consensus 260 v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~---~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 336 (528)
T 4b8j_A 260 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS---PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSL 336 (528)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC---hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHH
Confidence 6788888888887543321 1 1246788889999988 99999999999999987643322222 2368888888
Q ss_pred cCCC-chHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchH--
Q 006912 442 LDDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL-- 518 (626)
Q Consensus 442 l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l-- 518 (626)
+.++ ++.+|..|+|+|++++...... ...-.-..+++.++..+.+.++.++..|+++|++++....+....++
T Consensus 337 L~~~~~~~v~~~A~~~L~nl~~~~~~~----~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 412 (528)
T 4b8j_A 337 LTQNLKKSIKKEACWTISNITAGNKDQ----IQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVS 412 (528)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHTSCHHH----HHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHHHHHHCCCHHH----HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 8888 9999999999999998632211 01111236678888888888999999999999999987543333333
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Q 006912 519 EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (626)
Q Consensus 519 ~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~ 553 (626)
..+++.|..++...+..++..++.+|..++...+.
T Consensus 413 ~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 413 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888999999999876543
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.77 E-value=1.5e-15 Score=161.60 Aligned_cols=434 Identities=12% Similarity=0.078 Sum_probs=248.4
Q ss_pred CCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhh
Q 006912 26 SPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILAR-AEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG 103 (626)
Q Consensus 26 s~d~~~~r~~a~~~L~~~~~-~p~~~~~l~~il~~-~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~ 103 (626)
|+|-+ .|+-+.-++..+.+ +|+.....++.+.+ ..+.++.+|..|...+.+.. .++..+.+...+..+|.
T Consensus 81 s~~~~-~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~~l~~~L~ 152 (618)
T 1w63_A 81 SQKFT-DKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLAGEVEKLLK 152 (618)
T ss_dssp SSSHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHH
T ss_pred CCchH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHc
Confidence 45555 55555555555432 44433333333321 12455566666555554321 34445566667777777
Q ss_pred CCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHH
Q 006912 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (626)
Q Consensus 104 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~ 183 (626)
++++.||+.++.+++.+.+.. ++..+.+++.+...+.+.++.++.+++.+|..++...++.. .....++|
T Consensus 153 ~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~---------~~~~~~v~ 222 (618)
T 1w63_A 153 TSNSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML---------AHFRKLVP 222 (618)
T ss_dssp SCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH---------HHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH---------HHHHHHHH
Confidence 778888888888888887764 33445666777777777777788888777777765443210 01122333
Q ss_pred HHHHhcC---------------CCChHHHHHHHHHHHHHHhccchH---HHH----------------------------
Q 006912 184 RLLQFFQ---------------SPHTSLRKLSLGSVNQFIMLMPSA---LFV---------------------------- 217 (626)
Q Consensus 184 ~l~~~l~---------------~~~~~vr~~al~~l~~~~~~~~~~---~~~---------------------------- 217 (626)
.+++.|. .+++-.+..+++++..+....|.. +.+
T Consensus 223 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~ 302 (618)
T 1w63_A 223 QLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIM 302 (618)
T ss_dssp HHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 3333222 124445555555555544332210 000
Q ss_pred -------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhh
Q 006912 218 -------SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (626)
Q Consensus 218 -------~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~ 290 (626)
......+.+..++.++++++|..++.+|..++...|..+.++...++ .++.+.+.++|..+++.+..++
T Consensus 303 ~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~----~~l~d~d~~Ir~~alelL~~l~ 378 (618)
T 1w63_A 303 DIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIV----DCLKDLDVSIKRRAMELSFALV 378 (618)
T ss_dssp HSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHH----HGGGSSCHHHHHHHHHHHHHHC
T ss_pred hcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHH----HHccCCChhHHHHHHHHHHHHc
Confidence 01123455666677778889999999999999888887777666544 4567889999999999999998
Q ss_pred ccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHH
Q 006912 291 EAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC 370 (626)
Q Consensus 291 ~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 370 (626)
.... +. .++..++.++...+ ..+|..
T Consensus 379 ~~~n----v~----~iv~eL~~~l~~~d----------------------------------------------~e~r~~ 404 (618)
T 1w63_A 379 NGNN----IR----GMMKELLYFLDSCE----------------------------------------------PEFKAD 404 (618)
T ss_dssp CSSS----TH----HHHHHHHHHHHHCC----------------------------------------------HHHHHH
T ss_pred cccc----HH----HHHHHHHHHHHhCC----------------------------------------------HHHHHH
Confidence 7532 22 23333333322110 137888
Q ss_pred HHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCC--CchH
Q 006912 371 SAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD--KFPL 448 (626)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d--~~~~ 448 (626)
+..++..++..+++. ....++.+.+.+.+.. ..++..++..+..+....++. . ..+++.+...+.+ .+..
T Consensus 405 ~v~~I~~la~k~~~~-~~~~v~~ll~lL~~~~---~~v~~~~~~~l~~ii~~~p~l-~---~~~v~~L~~~l~~~~~~~~ 476 (618)
T 1w63_A 405 CASGIFLAAEKYAPS-KRWHIDTIMRVLTTAG---SYVRDDAVPNLIQLITNSVEM-H---AYTVQRLYKAILGDYSQQP 476 (618)
T ss_dssp HHHHHHHHHHSSCCC-HHHHHHHHHHHHHHTG---GGSCSSHHHHHHHHHHHSCST-H---HHHHHHHHHHHHHCCSCSH
T ss_pred HHHHHHHHHHHhCcc-HHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHhcChhH-H---HHHHHHHHHHHhcccccHH
Confidence 999999999987643 2344555666666554 344555555666665544322 2 2234444444432 2334
Q ss_pred HHHHHHHHHHHHHHHHhhh-cC---C-CchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Q 006912 449 IRSISCWTLSRFSKFIVQD-IG---H-QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQ 523 (626)
Q Consensus 449 vr~~a~~~l~~l~~~~~~~-~~---~-~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~ 523 (626)
+...++|++|.++..+... .. + ...+.....++..+++.. ..++.+|..+.+|+.++....++ .. +.+..
T Consensus 477 ~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~~~~~-~~---~~l~~ 551 (618)
T 1w63_A 477 LVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIMKLSTRFTC-TV---NRIKK 551 (618)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHTTCSS-CH---HHHHH
T ss_pred HHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhCcc-hH---HHHHH
Confidence 4457899999999877430 00 0 001222333333343332 45899999999999999876543 22 23333
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Q 006912 524 HLMMAFGKYQRRNLRIVYDAIGTLA 548 (626)
Q Consensus 524 ~l~~~l~~~~~~~~~~~~~~l~~i~ 548 (626)
.|.....+.+.+++..+.+.+..+.
T Consensus 552 ~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 552 VVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 2333344455678888887766654
No 33
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.76 E-value=3.3e-15 Score=158.99 Aligned_cols=459 Identities=10% Similarity=-0.007 Sum_probs=306.9
Q ss_pred HHHHHHHHHHHHhcCC-------ChHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhhccCChhH-HHHHHHhHhhhh
Q 006912 32 DKSQIWQQLQQYSQFP-------DFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSN-QQYIKSELLPCL 102 (626)
Q Consensus 32 ~r~~a~~~L~~~~~~p-------~~~~~l~~il~~~-~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~-~~~i~~~L~~~l 102 (626)
.|..|.-.|.+++++- .|...+-..+... ...+..-+..|+..+.+.+...|..-..-. .+...+.++..+
T Consensus 220 ~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll 299 (810)
T 3now_A 220 SSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMA 299 (810)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHh
Confidence 8999999998876522 2332222222211 144445556666777666654443311111 235567888888
Q ss_pred hCCcHHHHHHHHHHHHHHHhhc-CcCc-hHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccc-cCCCCCccchhh
Q 006912 103 GAADRHIRSTVGTIVSVVVQLG-GIAG-WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD-SDVPGLAECPIN 179 (626)
Q Consensus 103 ~~~~~~vr~~~~~~l~~i~~~~-~~~~-~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~-~~~~~~~~~~~~ 179 (626)
.++++.++..+..+++.++... .... ...-+|.|...+.+++..+|..++.+|..+.......-. ..+. +..+.
T Consensus 300 ~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~---~g~i~ 376 (810)
T 3now_A 300 TTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFG---DGAAL 376 (810)
T ss_dssp HSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSST---TTHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchh---hccHH
Confidence 9999999999999999977542 1111 122248899999988888999999999888653321100 1110 12356
Q ss_pred hhHHHHHHhcCCC--ChHHHHHHHHHHHHHHhccchHHHHhH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCcc-
Q 006912 180 IFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS- 254 (626)
Q Consensus 180 ~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~- 254 (626)
.+++.+.++|.++ +.+++..|+++|..+....+.. .... ..+++.|+.++..++..+...+..+|..+...+..
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk-~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q 455 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECK-EKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQ 455 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHH-HHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHH-HHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhh
Confidence 7889999999887 8899999999999887542211 1111 36789999988888888999999999999874310
Q ss_pred ---------------------------chhhhHH-----HHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhh
Q 006912 255 ---------------------------FLEPHLR-----NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEF 302 (626)
Q Consensus 255 ---------------------------~~~~~l~-----~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 302 (626)
....... ..++.+...+.+.++.++..|...+..++........+ .
T Consensus 456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~V--v 533 (810)
T 3now_A 456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKV--V 533 (810)
T ss_dssp CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHH--H
T ss_pred hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHH--H
Confidence 0110011 35667778888889999999999999998652211111 1
Q ss_pred hhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc
Q 006912 303 LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF 382 (626)
Q Consensus 303 l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~ 382 (626)
-...+|.++..+.... ...+..|+++|..++...
T Consensus 534 ~~Gaip~Lv~LL~s~~----------------------------------------------~~~k~~Aa~AL~nL~~~~ 567 (810)
T 3now_A 534 QEGGVKALLRMALEGT----------------------------------------------EKGKRHATQALARIGITI 567 (810)
T ss_dssp HTTHHHHHHHHHHSSC----------------------------------------------HHHHHHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHccCC----------------------------------------------HHHHHHHHHHHHHHhcCC
Confidence 1245666665554211 125788999999987654
Q ss_pred Cc-ch-----HHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHH-HHHHHHhhhcCCCchHHHHHHHH
Q 006912 383 GD-EI-----LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCW 455 (626)
Q Consensus 383 ~~-~~-----~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~ 455 (626)
.+ .. ....+|.+..++.++. +...+..|+.+|+.++....+.....+. ..+|.+...+.++++.||..|++
T Consensus 568 ~p~~~~~~~~~~~aIppLv~LL~~~~--~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~ 645 (810)
T 3now_A 568 NPEVSFSGQRSLDVIRPLLNLLQQDC--TALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ 645 (810)
T ss_dssp CHHHHTTTHHHHHTHHHHHHTTSTTS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred ChhhhhcchhhhcHHHHHHHHhCCCC--cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 32 11 1236777888887542 1566778999999999875321111121 36788888888999999999999
Q ss_pred HHHHHHHHHhhhcCCCchhhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHHHhh
Q 006912 456 TLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK 531 (626)
Q Consensus 456 ~l~~l~~~~~~~~~~~~~~~~~--~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~i~~~l~~~l~~ 531 (626)
++++++..-.. ...+. ...++.++..+.+++..+|..|+++|+++...........+ ...++.|..++..
T Consensus 646 ~L~NLa~~~~~------~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s 719 (810)
T 3now_A 646 CLCNLVMSEDV------IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN 719 (810)
T ss_dssp HHHHHTTSHHH------HHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC
T ss_pred HHHHHhCChHH------HHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC
Confidence 99999863221 22223 24788899999988999999999999999974322222222 3577788888888
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 006912 532 YQRRNLRIVYDAIGTLADA 550 (626)
Q Consensus 532 ~~~~~~~~~~~~l~~i~~~ 550 (626)
.+.+.++.+..++.++...
T Consensus 720 ~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 720 PSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp SSHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 8889999999999998763
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.76 E-value=1.3e-15 Score=166.54 Aligned_cols=462 Identities=15% Similarity=0.087 Sum_probs=302.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc----------CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 006912 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ----------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (626)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~----------~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~ 84 (626)
..|+.+|. ++|.. +|..|...|..+.. .++.+..|+..|.. +.++.+|..|+..|++. ...-.
T Consensus 153 p~Lv~lL~---~~d~~-vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~--~~d~~vr~~Aa~aL~~L-s~~~~ 225 (780)
T 2z6g_A 153 PELTKLLN---DEDQV-VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTSGTLHNL-SHHRE 225 (780)
T ss_dssp HHHHHHHH---CSCHH-HHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHH-HTSHH
T ss_pred HHHHHHHC---CCCHH-HHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC--CCCHHHHHHHHHHHHHH-hCCch
Confidence 34444443 67777 99999999998754 34678888888875 56899999999999873 32111
Q ss_pred cCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcC--c--hHHHHHHHHHHhccCChhHHhHHHHHHHHHhh
Q 006912 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--G--WLELLQALVTCLDSNDINHMEGAMDALSKICE 160 (626)
Q Consensus 85 ~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~--~--~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~ 160 (626)
....-......+.|+..|.++++.+|..++.+|..++...... . -.+.++.+.+.+.++++.++..++.+|..++.
T Consensus 226 ~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 226 GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 0001111245567888888889999999999999999764221 1 13568899999999899999999999987775
Q ss_pred hchhccccCCCCCccchhhhhHHHHHHhcCCCCh-HHHHHHHHHHHHHHhccchHHHHhH--HHHHHHHHHhcCCCCHHH
Q 006912 161 DIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEV 237 (626)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~-~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~ 237 (626)
...+... . -.-...++.++..+.+.+. ..+..++.++..+... +.. ...+ ...++.|..++.+.+..+
T Consensus 306 ~~~e~~~-~------i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~-~~~i~~~g~l~~Ll~lL~~~~~~~ 376 (780)
T 2z6g_A 306 GNQESKL-I------ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSN-KPAIVEAGGMQALGLHLTDPSQRL 376 (780)
T ss_dssp TCHHHHH-H------HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTH-HHHHHHTTHHHHHGGGTTCSCHHH
T ss_pred CChHHHH-H------HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHH-HHHHHHhchHHHHHHHHcCCchHH
Confidence 3322110 0 0113557788888887654 4556778888877643 221 1211 145788888888888999
Q ss_pred HHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhh-hhhHHHHhhhccc
Q 006912 238 RKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIY 316 (626)
Q Consensus 238 ~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l-~~li~~l~~~l~~ 316 (626)
+..++.+|..++...+... ....+++.++..+.+.+++++..|+..+..++... ........ ...++.++..+..
T Consensus 377 ~~~a~~~L~~L~~~~~~~~--~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~--~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 377 VQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp HHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--HHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhhh--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHHc
Confidence 9999999999987655421 22567788888888899999999999999998752 11111111 2344555444432
Q ss_pred CchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-c-----h-HHh
Q 006912 317 ADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-E-----I-LPT 389 (626)
Q Consensus 317 ~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~-----~-~~~ 389 (626)
..+ . -.+|..|..+|..++...++ . + ...
T Consensus 453 ~~~----------------------------------~----------~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~ 488 (780)
T 2z6g_A 453 AGD----------------------------------R----------EDITEPAICALRHLTSRHQDAEMAQNAVRLHY 488 (780)
T ss_dssp HTT----------------------------------C----------HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTT
T ss_pred cCC----------------------------------H----------HHHHHHHHHHHHHHHhcCchHHHHHHHHHHcC
Confidence 100 0 03678888888888653332 1 1 124
Q ss_pred HHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH-HHHHHHHhhhcCCCc----------------------
Q 006912 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKF---------------------- 446 (626)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~l~~~l~d~~---------------------- 446 (626)
.++.+.+.+.+++. |.+|.+++.+|+.++.+.... .... ..+++.++..+.+.+
T Consensus 489 ~l~~L~~lL~~~~~--~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~ 565 (780)
T 2z6g_A 489 GLPVVVKLLHPPSH--WPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 565 (780)
T ss_dssp CHHHHHHTTSTTCC--HHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCH
T ss_pred CHHHHHHHhcCCCh--HHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccCh
Confidence 57778888877642 799999999999998643211 1111 124566666555443
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCchhhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHH--HH
Q 006912 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEI--IL 522 (626)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~--i~ 522 (626)
..++..++.+|+.++.... ....+ ..+++.|+..+.+.++.|+..|+.+|.+++.. +.....+.. .+
T Consensus 566 ~~v~~~a~~aL~~La~~~~-------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i 636 (780)
T 2z6g_A 566 EEIVEACTGALHILARDIH-------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGAT 636 (780)
T ss_dssp HHHHHHHHHHHHHHTTSHH-------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhcChh-------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCH
Confidence 3455566666666653211 11111 34578899999999999999999999998632 111122222 45
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Q 006912 523 QHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (626)
Q Consensus 523 ~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~ 552 (626)
+.|..++.+.+..+++.+..+|..+...-+
T Consensus 637 ~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 637 APLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 566777777778888899999998876443
No 35
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.75 E-value=6.7e-15 Score=156.64 Aligned_cols=450 Identities=13% Similarity=0.025 Sum_probs=306.2
Q ss_pred CCCCHHHHHHHHHHHHHHh-----------cCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHH---
Q 006912 26 SPSSTADKSQIWQQLQQYS-----------QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ--- 91 (626)
Q Consensus 26 s~d~~~~r~~a~~~L~~~~-----------~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~--- 91 (626)
+++.+ ..-.|...+..+. ..+++++.++.++. +.++.++..|.-.+.+.-.+ ++.+
T Consensus 258 ~~~~~-~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~---s~~~~~q~~A~~al~~aa~~------~~~R~~I 327 (810)
T 3now_A 258 APDME-SKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMAT---TDDELQQRVACECLIAASSK------KDKAKAL 327 (810)
T ss_dssp SCCHH-HHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHH---SSCHHHHHHHHHHHHHHTTS------HHHHHTT
T ss_pred cCChH-hHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhC---CCCHHHHHHHHHHHHHHcCC------cHHHHHH
Confidence 45656 6666677766542 25688888888886 56888888888888764321 2222
Q ss_pred --HHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhh---cCc------CchHHHHHHHHHHhccC--ChhHHhHHHHHHHHH
Q 006912 92 --QYIKSELLPCLGAADRHIRSTVGTIVSVVVQL---GGI------AGWLELLQALVTCLDSN--DINHMEGAMDALSKI 158 (626)
Q Consensus 92 --~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~---~~~------~~~~~ll~~l~~~l~~~--~~~~r~~~l~~l~~l 158 (626)
..+ +.|...+.+++..+|..++.+|..+... +++ +....+++.+.+++.++ ++++++.++.+|.++
T Consensus 328 ~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayL 406 (810)
T 3now_A 328 CEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYL 406 (810)
T ss_dssp HHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHH
T ss_pred HHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 233 6677777778888999999899988743 111 22467899999999887 889999999999999
Q ss_pred hhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccc------------------------hH
Q 006912 159 CEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP------------------------SA 214 (626)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~------------------------~~ 214 (626)
......... + ..-..++|.+++.+.+++..++..|+.+|.++....+ ..
T Consensus 407 S~~~~vk~~--l-----v~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld 479 (810)
T 3now_A 407 TLDAECKEK--L-----IEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELD 479 (810)
T ss_dssp TTSHHHHHH--H-----HHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHH
T ss_pred hCCcHHHHH--H-----HHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccc
Confidence 876543211 0 0015789999999999999999999999999996321 00
Q ss_pred HHHhHH---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHH--HHHHHHHhhccCCChHHHHHHH
Q 006912 215 LFVSMD---------QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNKDTDDDVALEAC 283 (626)
Q Consensus 215 ~~~~~~---------~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~~~~~~~v~~~a~ 283 (626)
..+... ..++.|..++..++++++..++.+|..++.. ++ ....+- ..++.++..+.+.+...+..|.
T Consensus 480 ~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~-~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa 557 (810)
T 3now_A 480 DVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KE-LRGKVVQEGGVKALLRMALEGTEKGKRHAT 557 (810)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH-HHHHHHHCCCHHHHHHHHccCCHHHHHHHH
Confidence 011111 4578899999999999999999999999854 32 222221 4566677777777888899999
Q ss_pred hHHHHhhccCCcchhHH-hhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCcccc
Q 006912 284 EFWHSYFEAQLPHENLK-EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIV 362 (626)
Q Consensus 284 ~~l~~l~~~~~~~~~~~-~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (626)
..|..++........+. ......+|.++..+......
T Consensus 558 ~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~------------------------------------------ 595 (810)
T 3now_A 558 QALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTA------------------------------------------ 595 (810)
T ss_dssp HHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCH------------------------------------------
T ss_pred HHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcH------------------------------------------
Confidence 99999876421111110 11223566666655321000
Q ss_pred ccccHHHHHHHHHHHHHhhcCc---chH-HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH--HHHHH
Q 006912 363 NVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVA 436 (626)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~l~~ 436 (626)
-.+..|..+|..++..-.+ .++ ...++.+..++.+++ ..++.+|+.+++.++.+- +....++ ...++
T Consensus 596 ---l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~---~~Vq~~A~~~L~NLa~~~-~~~~~~v~~~g~l~ 668 (810)
T 3now_A 596 ---LENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH---LYLTRAAAQCLCNLVMSE-DVIKMFEGNNDRVK 668 (810)
T ss_dssp ---HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC---TTHHHHHHHHHHHHTTSH-HHHHHHHSSSSHHH
T ss_pred ---HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC---HHHHHHHHHHHHHHhCCh-HHHHHHHhccCcHH
Confidence 0123466777777654321 222 245778888888888 899999999999998753 2222333 24788
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccc
Q 006912 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL 514 (626)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~ 514 (626)
.++..+..++..+|..|+|+|+.++...... ....+ ...++.|+..+.+++..+|..|++++.+++....+ .
T Consensus 669 ~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~-----~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e-~ 742 (810)
T 3now_A 669 FLALLCEDEDEETATACAGALAIITSVSVKC-----CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEE-I 742 (810)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHCHHH-----HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHH-H
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHH-H
Confidence 8999999999999999999999999742221 22233 35788889999999999999999999999863221 1
Q ss_pred cchH--HHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHH
Q 006912 515 APRL--EIILQHLMMAFGKY---QRRNLRIVYDAIGTLADA 550 (626)
Q Consensus 515 ~~~l--~~i~~~l~~~l~~~---~~~~~~~~~~~l~~i~~~ 550 (626)
..++ ...++.|..++... +.+..+.++++|..+...
T Consensus 743 ~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 743 AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 1111 14556666666543 456777899999888754
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.73 E-value=1.3e-15 Score=166.51 Aligned_cols=498 Identities=10% Similarity=0.019 Sum_probs=303.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhc---CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHH
Q 006912 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (626)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~~---~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~ 93 (626)
+..+++.+.+++.. .|..+.+.+..... ..+.++.|..+|. +.++.+|..|+..|.+.....-....-.....
T Consensus 117 i~~lv~~L~~~~~~-~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~---~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 117 HPTNVQRLAEPSQM-LKHAVVNLINYQDDAELATRAIPELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ---------CCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred HHHHHHHhcCccHH-HHHHHHHHHHhhhHHHHHhCCHHHHHHHHC---CCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 34566666778888 88887777754321 2456788888775 56889999999998765422100000000124
Q ss_pred HHHhHhhhhhC-CcHHHHHHHHHHHHHHHhhcCc-Cc--hHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccC
Q 006912 94 IKSELLPCLGA-ADRHIRSTVGTIVSVVVQLGGI-AG--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD 169 (626)
Q Consensus 94 i~~~L~~~l~~-~~~~vr~~~~~~l~~i~~~~~~-~~--~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~ 169 (626)
+...|+..|.+ .+..+|..++.++..++..... .. -.+.++.|.+.+.++++.++..++.+|..++...+....
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~-- 270 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM-- 270 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHH--
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHH--
Confidence 56677777764 4889999999999998754211 00 124689999999999999999999999999876543211
Q ss_pred CCCCccch-hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhH-HHHHHHHHHhcCCCCHH-HHHHHHHHHH
Q 006912 170 VPGLAECP-INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAE-VRKLVCAAFN 246 (626)
Q Consensus 170 ~~~~~~~~-~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~-~~~~~~~~l~ 246 (626)
.. -...++.++..+.+++..++..++.++..+....++.-.... ...++.+..++.+.+.+ .+..++.++.
T Consensus 271 ------~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~ 344 (780)
T 2z6g_A 271 ------AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 344 (780)
T ss_dssp ------HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ------HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11 256889999999999999999999999877643322111111 13466777777665544 4556677777
Q ss_pred HHHhhCccchhhhH-HHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhh
Q 006912 247 LLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVE 325 (626)
Q Consensus 247 ~l~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~ 325 (626)
.+... +......+ ...++.++..+.+.+..++..++.++..++....... ....+++.++..+...
T Consensus 345 ~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~----~~~~~i~~Lv~lL~~~-------- 411 (780)
T 2z6g_A 345 VLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE----GMEGLLGTLVQLLGSD-------- 411 (780)
T ss_dssp HHHTS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS----CCHHHHHHHHHHTTCS--------
T ss_pred HhhcC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh----hhhhHHHHHHHHHcCC--------
Confidence 77643 22211111 1456777788888888899999999999987632211 2345666665554321
Q ss_pred hhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---chH-HhHHHHHHHhhcC-
Q 006912 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSA- 400 (626)
Q Consensus 326 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~- 400 (626)
.+.+|..|..+|..++...+. .+. ...++.+.+.+.+
T Consensus 412 --------------------------------------d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 453 (780)
T 2z6g_A 412 --------------------------------------DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 453 (780)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred --------------------------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHcc
Confidence 134788899999988664321 111 2345666666655
Q ss_pred CCCCCh-hHHHHHHHHHHHHHccCccc--hhhhH--HHHHHHHhhhcCCCc-hHHHHHHHHHHHHHHHHHhhhcCCCchh
Q 006912 401 SGDEAW-KDREAAVLALGAIAEGCIKG--LYPHL--SEIVAFLIPLLDDKF-PLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (626)
Q Consensus 401 ~~~~~~-~~r~aal~~l~~l~~~~~~~--~~~~l--~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 474 (626)
.+ + .+|..++.+|+.++....+. ....+ ...++.++..+.+++ +.||..|+|+|++++..-.. ..
T Consensus 454 ~~---~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~------~~ 524 (780)
T 2z6g_A 454 GD---REDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN------HA 524 (780)
T ss_dssp TT---CHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH------HH
T ss_pred CC---HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH------HH
Confidence 33 4 89999999999997654321 11111 235788888888776 49999999999999853221 11
Q ss_pred hhH-HHHHHHHHHHhccCC----------------------HHHHHHHHHHHHHHHHHh--cccccchHHHHHHHHHHHH
Q 006912 475 EQF-EKVLMGLLKRILDTN----------------------KRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAF 529 (626)
Q Consensus 475 ~~~-~~ll~~l~~~l~d~~----------------------~~v~~~a~~al~~l~~~~--~~~~~~~l~~i~~~l~~~l 529 (626)
... ..+++.++..+.+.+ ..++..++.+|.+++... ...+. -...++.|..++
T Consensus 525 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~--~~~~i~~Lv~lL 602 (780)
T 2z6g_A 525 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIR--GLNTIPLFVQLL 602 (780)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHH--HTCCHHHHHHGG
T ss_pred HHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHH--HCCcHHHHHHHH
Confidence 111 235566666555432 346667777777765311 00110 023456677777
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhccccCChhhhhh--hhHHHHHHHhcCCCCCCcc-chHHHHHHHHHHH
Q 006912 530 GKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDI--LMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQA 595 (626)
Q Consensus 530 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~--l~~~l~~~~~~~~~~~~~~-~~~l~~~~~l~~~ 595 (626)
...+..++..+..+|..++.. ++.. ..+.. .++.|...+.. .+.++ ..+..++..++..
T Consensus 603 ~~~~~~v~~~a~~aL~~L~~~--~~~~--~~i~~~g~i~~L~~Ll~~---~~~~Vr~~A~~aL~~l~~~ 664 (780)
T 2z6g_A 603 YSPIENIQRVAAGVLCELAQD--KEAA--EAIEAEGATAPLTELLHS---RNEGVATYAAAVLFRMSED 664 (780)
T ss_dssp GCSCHHHHHHHHHHHHHHHTS--HHHH--HHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHhcC--HHHH--HHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHcC
Confidence 777778888888888887522 1111 11221 44555544432 23333 3566666666553
No 37
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.73 E-value=1.7e-15 Score=159.76 Aligned_cols=451 Identities=13% Similarity=0.051 Sum_probs=289.9
Q ss_pred CCCCHHHHHHHHHHHHHHhc----------CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHH---
Q 006912 26 SPSSTADKSQIWQQLQQYSQ----------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ--- 92 (626)
Q Consensus 26 s~d~~~~r~~a~~~L~~~~~----------~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~--- 92 (626)
++|.. +|..|...|..+.. .++.++.+...|.. +.++.+|..|+..|++... .++.+.
T Consensus 28 ~~~~~-v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~--~~~~~~~~~a~~~L~~ls~------~~~~~~~i~ 98 (529)
T 1jdh_A 28 DEDQV-VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTAGTLHNLSH------HREGLLAIF 98 (529)
T ss_dssp CSCHH-HHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTT------SHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhc--CCCHHHHHHHHHHHHHHHc------CchhHHHHH
Confidence 56777 99999999988753 23567778887864 5688899999999986422 122332
Q ss_pred --HHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcC--c--hHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhcc
Q 006912 93 --YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--G--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (626)
Q Consensus 93 --~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~--~--~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~ 166 (626)
...+.|+..+.++++.++..++.++..++...... . -.+.+|.+.+.+.++++.++..+..+|..++...++.-
T Consensus 99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 34457788888889999999999999999764221 1 15678999999999999999999899988876433211
Q ss_pred ccCCCCCccchhhhhHHHHHHhcCCCC-hHHHHHHHHHHHHHHhccchHHHHhH--HHHHHHHHHhcCCCCHHHHHHHHH
Q 006912 167 DSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCA 243 (626)
Q Consensus 167 ~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~ 243 (626)
. . -.-.+.++.++..+.+.+ ...+..++.++..+... +.. ...+ ...++.+..++.+++++++..++.
T Consensus 179 ~-~------i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~-~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 179 L-I------ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249 (529)
T ss_dssp H-H------HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTH-HHHHHHTTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred H-H------HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-ccc-HHHHHHCCCHHHHHHHHhCCChHHHHHHHH
Confidence 0 0 011345777888887654 45666778888877643 221 1221 256888999998889999999999
Q ss_pred HHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhh-hhhHHHHhhhcccCchhhh
Q 006912 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDES 322 (626)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l-~~li~~l~~~l~~~~~d~~ 322 (626)
+|..+....+... ....+++.++..+.+.+++++..++..+..++... ......+. ...++.++..+....+
T Consensus 250 ~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~v~~L~~ll~~~~~--- 322 (529)
T 1jdh_A 250 TLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGD--- 322 (529)
T ss_dssp HHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC--HHHHHHHHHTTHHHHHHHHHHHHTT---
T ss_pred HHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHHHHccCC---
Confidence 9999987654422 23467788888888899999999999999997752 11111111 1234444444331100
Q ss_pred hhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc------chH-HhHHHHHH
Q 006912 323 LVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD------EIL-PTLMPVIQ 395 (626)
Q Consensus 323 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~------~~~-~~l~~~l~ 395 (626)
.+.++..+..+|..++...+. .+. ...++.+.
T Consensus 323 -----------------------------------------~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~ 361 (529)
T 1jdh_A 323 -----------------------------------------REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361 (529)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHH
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHH
Confidence 024778888888888654332 111 13567788
Q ss_pred HhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH-HHHHHHHhhhcCCCchHHHHHHHHHHHH--HH-----------
Q 006912 396 AKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSR--FS----------- 461 (626)
Q Consensus 396 ~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~~l~~--l~----------- 461 (626)
+.+.+++. |.++..++.+++.++.+.... .... ..++|.++..+.+.++.+|..|+|++++ +.
T Consensus 362 ~lL~~~~~--~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~ 438 (529)
T 1jdh_A 362 KLLHPPSH--WPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 438 (529)
T ss_dssp HTTSTTCC--HHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHH
T ss_pred HHhccccc--hHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHH
Confidence 88887641 799999999999998754321 2222 2368888888888889999988888775 11
Q ss_pred --HHHhhhcCCCchhhh--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHHHhhhhHH
Q 006912 462 --KFIVQDIGHQNGREQ--FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQRR 535 (626)
Q Consensus 462 --~~~~~~~~~~~~~~~--~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~ 535 (626)
..+............ -..+++.++..+.++++.++..|+.+|.++... +.....+ ...++.|..++.+.+..
T Consensus 439 ~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~l~~~~~~~ 516 (529)
T 1jdh_A 439 CTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEG 516 (529)
T ss_dssp HHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGGCSSHH
T ss_pred HHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHhcCCCHH
Confidence 111100000000000 123467888899999999999999999998632 1111111 12345566666676777
Q ss_pred HHHHHHHHHHHH
Q 006912 536 NLRIVYDAIGTL 547 (626)
Q Consensus 536 ~~~~~~~~l~~i 547 (626)
++..+..+|..+
T Consensus 517 v~~~a~~aL~~l 528 (529)
T 1jdh_A 517 VATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 777777777654
No 38
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.73 E-value=7.2e-15 Score=158.15 Aligned_cols=457 Identities=14% Similarity=0.068 Sum_probs=302.7
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC----------ChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh
Q 006912 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFP----------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (626)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p----------~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~ 83 (626)
+..|+.+|. ++|.. +|..|...|.++...+ +.+..++..|.. +.++.+|..|+..|++....
T Consensus 16 i~~Lv~lL~---~~~~~-vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~--~~~~~~~~~A~~~L~~Ls~~-- 87 (644)
T 2z6h_A 16 IPELTKLLN---DEDQV-VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTAGTLHNLSHH-- 87 (644)
T ss_dssp HHHHHHHHT---CSCHH-HHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHc---CCCHH-HHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc--CCCHHHHHHHHHHHHHHhcC--
Confidence 444444443 57777 9999999999986532 346677777764 56889999999888753221
Q ss_pred ccCChhHHH-----HHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCc----hHHHHHHHHHHhccCChhHHhHHHHH
Q 006912 84 KSMSPSNQQ-----YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG----WLELLQALVTCLDSNDINHMEGAMDA 154 (626)
Q Consensus 84 ~~l~~~~~~-----~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~----~~~ll~~l~~~l~~~~~~~r~~~l~~ 154 (626)
++.+. .....|+..|.++++.+|..++.++..++....... -.+.++.+.+.+.+++++++..++.+
T Consensus 88 ----~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 163 (644)
T 2z6h_A 88 ----REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 163 (644)
T ss_dssp ----HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred ----hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHH
Confidence 22222 345677888888899999999999999997642211 14578999999999998888888889
Q ss_pred HHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCC-hHHHHHHHHHHHHHHhccchHHHHhH--HHHHHHHHHhcC
Q 006912 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSN 231 (626)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~ 231 (626)
|..++...++.-. . -.-...++.++..+.+.+ ..++..++.+|..+... +. ....+ ...++.+..++.
T Consensus 164 L~~La~~~~~~~~-~------i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~-~~~~l~~~g~l~~L~~ll~ 234 (644)
T 2z6h_A 164 LQILAYGNQESKL-I------ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SS-NKPAIVEAGGMQALGLHLT 234 (644)
T ss_dssp HHHHHTTCHHHHH-H------HHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TT-HHHHHHHTTHHHHHHTTTT
T ss_pred HHHHHhcCcHHHH-H------HHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cc-cHHHHHHCCCHHHHHHHHh
Confidence 9888864332210 0 012456788888888754 57788889998888753 22 12222 146888999998
Q ss_pred CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhh-hhhHHHH
Q 006912 232 DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVL 310 (626)
Q Consensus 232 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l-~~li~~l 310 (626)
+++..++..++.+|..++...+.. .....+++.++..+.+.+.+++..++..+..++.... ....... ...++.+
T Consensus 235 ~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~--~~~~~v~~~g~v~~L 310 (644)
T 2z6h_A 235 DPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY--KNKMMVCQVGGIEAL 310 (644)
T ss_dssp CSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH--HHHHHHHHcCCHHHH
Confidence 889999999999999998765442 2234678888888888899999999999999987521 1111111 2245555
Q ss_pred hhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-c----
Q 006912 311 LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-E---- 385 (626)
Q Consensus 311 ~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~---- 385 (626)
+..+....+ ...++..|..+|..++...+. .
T Consensus 311 v~lL~~~~~--------------------------------------------~~~v~~~a~~aL~nL~~~~~~~~~~q~ 346 (644)
T 2z6h_A 311 VRTVLRAGD--------------------------------------------REDITEPAICALRHLTSRHQEAEMAQN 346 (644)
T ss_dssp HHHHHHHTT--------------------------------------------CHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred HHHHHccCC--------------------------------------------cHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 544432110 013788888999888654332 1
Q ss_pred -hH-HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH-HHHHHHHhhhcCCCchHHHH-----------
Q 006912 386 -IL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRS----------- 451 (626)
Q Consensus 386 -~~-~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~----------- 451 (626)
+. ...++.+.+.+.+++ ++.++.+++.+++.++.+.... .... ..++|.++..+.+.++.+|.
T Consensus 347 ~v~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~ 423 (644)
T 2z6h_A 347 AVRLHYGLPVVVKLLHPPS--HWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 423 (644)
T ss_dssp HHHHTTHHHHHHHTTSTTC--CHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHccChHHHHHHhCccC--chHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchh
Confidence 11 246788888888753 1899999999999998754321 1111 13566666666665544444
Q ss_pred -----------HHHHHHHHHHHHHhhhcCCCchhhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchH
Q 006912 452 -----------ISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL 518 (626)
Q Consensus 452 -----------~a~~~l~~l~~~~~~~~~~~~~~~~~--~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l 518 (626)
.++.+|+.++.... ....+ ...++.++..+.+.++.++..|+.+|.+++.. +.....+
T Consensus 424 ~~~~~~~~v~~~a~~aL~~La~~~~-------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i 494 (644)
T 2z6h_A 424 VEGVRMEEIVEGCTGALHILARDVH-------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAI 494 (644)
T ss_dssp CCSSCHHHHHHHHHHHHHHHTTSHH-------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhcCHH-------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHH
Confidence 44555554443211 11111 34678899999999999999999999998742 1111111
Q ss_pred H--HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 006912 519 E--IILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (626)
Q Consensus 519 ~--~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~ 551 (626)
. ..++.|..++.+.+..++..+..+|+.+....
T Consensus 495 ~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 495 EAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred HHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 1 23456677777777888888888888876543
No 39
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.72 E-value=3.2e-14 Score=151.38 Aligned_cols=438 Identities=10% Similarity=0.014 Sum_probs=262.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc--CC--ChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhH
Q 006912 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ--FP--DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN 90 (626)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~--~p--~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~ 90 (626)
.++.++-+...++|.. .|+.+-..|.-+.- .+ ......+..+. +.+...|+.+-..+.+.. .-+++.
T Consensus 34 ~e~~~ir~~l~~~~~~-~k~~~l~kli~~~~~G~d~~~~~~~vik~~~---s~~~~~Krl~Yl~~~~~~-----~~~~e~ 104 (618)
T 1w63_A 34 KECAAIRSSFREEDNT-YRCRNVAKLLYMHMLGYPAHFGQLECLKLIA---SQKFTDKRIGYLGAMLLL-----DERQDV 104 (618)
T ss_dssp HHHHHHHHHHTTTCTT-THHHHHHHHHHHHHTTCCCGGGHHHHHHHHH---SSSHHHHHHHHHHHHHHC-----CCCHHH
T ss_pred HHHHHHHHHhhCCCHH-HHHHHHHHHHHHHHcCCCCcchHHHHHHHHc---CCchHHHHHHHHHHHHHh-----CCCcHH
Confidence 3344444444555666 66666665554321 11 12233444443 677888888888775432 235666
Q ss_pred HHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCC
Q 006912 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (626)
Q Consensus 91 ~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~ 170 (626)
...+.+.+.+-|+++++.+|..+..+++.+.. +...+.+++.+.+++.++++.+|..|+.+++.++...++.
T Consensus 105 ~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~----- 176 (618)
T 1w63_A 105 HLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL----- 176 (618)
T ss_dssp HHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG-----
T ss_pred HHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH-----
Confidence 66777888888999999999999999998873 3445778999999999999999999999999999977653
Q ss_pred CCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccch---HHHHhHHHHHHHHHHhcC-----------CCCHH
Q 006912 171 PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS---ALFVSMDQYLQGLFLLSN-----------DPSAE 236 (626)
Q Consensus 171 ~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~---~~~~~~~~~l~~l~~~~~-----------~~~~~ 236 (626)
+..+++.+...+.|.++.|+..|+.++..+....|+ .+...++.++..|.+... .+++.
T Consensus 177 -------v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 249 (618)
T 1w63_A 177 -------MEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPF 249 (618)
T ss_dssp -------GGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHH
T ss_pred -------HHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCCh
Confidence 246677788889999999999999999998876543 222223333443333211 23566
Q ss_pred HHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhh---ccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhh
Q 006912 237 VRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV---NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (626)
Q Consensus 237 ~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~---~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~ 313 (626)
.+..++++|..+....++.-.. +.+++..+... .++....+...|+.++..+..
T Consensus 250 ~q~~il~~L~~l~~~~~~~~~~-~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---------------------- 306 (618)
T 1w63_A 250 LQVRILRLLRILGRNDDDSSEA-MNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---------------------- 306 (618)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHT-THHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC----------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC----------------------
Confidence 6666667766665543321111 11111111111 011112223333322222110
Q ss_pred cccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHH
Q 006912 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPV 393 (626)
Q Consensus 314 l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~ 393 (626)
.........+.
T Consensus 307 ---------------------------------------------------------------------~~~l~~~a~~~ 317 (618)
T 1w63_A 307 ---------------------------------------------------------------------ESGLRVLAINI 317 (618)
T ss_dssp ---------------------------------------------------------------------CHHHHHHHHHH
T ss_pred ---------------------------------------------------------------------CHHHHHHHHHH
Confidence 00111223445
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCch
Q 006912 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (626)
Q Consensus 394 l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 473 (626)
+..++.+++ ..+|+.|+.+++.++...+..+.++ .+.++.++.|+++.||..|+.++..++.
T Consensus 318 L~~~L~~~d---~~vr~~aL~~L~~i~~~~p~~~~~~----~~~i~~~l~d~d~~Ir~~alelL~~l~~----------- 379 (618)
T 1w63_A 318 LGRFLLNND---KNIRYVALTSLLKTVQTDHNAVQRH----RSTIVDCLKDLDVSIKRRAMELSFALVN----------- 379 (618)
T ss_dssp HHHHHTCSS---TTTHHHHHHHHHHHHHHHHHHHGGG----HHHHHHGGGSSCHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHhCCC---CchHHHHHHHHHHHHhhCHHHHHHH----HHHHHHHccCCChhHHHHHHHHHHHHcc-----------
Confidence 555677777 8899999999998887654444444 3456677788889999999888887764
Q ss_pred hhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Q 006912 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (626)
Q Consensus 474 ~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~ 553 (626)
...+..++..+...+.+.+..+|..++.+|+.++....+....|++.++ .++......+...++.++..++...+
T Consensus 380 ~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll----~lL~~~~~~v~~~~~~~l~~ii~~~p- 454 (618)
T 1w63_A 380 GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIM----RVLTTAGSYVRDDAVPNLIQLITNSV- 454 (618)
T ss_dssp SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHH----HHHHHTGGGSCSSHHHHHHHHHHHSC-
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH----HHHHhccchhHHHHHHHHHHHHhcCh-
Confidence 1224556777777777778889999999999998876655555555444 44444433333334445555554432
Q ss_pred ccCChhhhhhhhHHHHHHHhcCCCCCCccchHHHHHHHHHHHh
Q 006912 554 ELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQAL 596 (626)
Q Consensus 554 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~l~~~~ 596 (626)
+ .-...+..+...+......++....++.++|..+..+
T Consensus 455 ~-----l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i 492 (618)
T 1w63_A 455 E-----MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLL 492 (618)
T ss_dssp S-----THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHH
T ss_pred h-----HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHh
Confidence 1 2223344444454432111222234555666665544
No 40
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.3e-16 Score=146.57 Aligned_cols=210 Identities=17% Similarity=0.160 Sum_probs=173.7
Q ss_pred chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHH-HHccCccch--hhhHHHHHHHHhhhc-CCCchHHHHHHHHHHHHH
Q 006912 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGA-IAEGCIKGL--YPHLSEIVAFLIPLL-DDKFPLIRSISCWTLSRF 460 (626)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~-l~~~~~~~~--~~~l~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l 460 (626)
++++.+-+-+.+.+++++ |+.|.+|+..++. +.+++++.. ...+..++..+...+ +|+|+.||..|+.+++.+
T Consensus 12 ~i~~kl~~~f~~~l~s~~---w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~l 88 (249)
T 2qk1_A 12 TILDKLPKDFQERITSSK---WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELI 88 (249)
T ss_dssp CCGGGSCTTHHHHHTCSS---HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred hhhhhCChhHHHHhhcCC---HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 344444445677788888 9999999999999 988765543 334457788899999 799999999999999999
Q ss_pred HHHHh-hhcCCCchh-hhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHHHhhhhHHHH
Q 006912 461 SKFIV-QDIGHQNGR-EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL-APRLEIILQHLMMAFGKYQRRNL 537 (626)
Q Consensus 461 ~~~~~-~~~~~~~~~-~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~-~~~l~~i~~~l~~~l~~~~~~~~ 537 (626)
++.+. + ... +|...++|.++..++|..+.|+.++..|+..+++.+.+.. .+|++.+++.+...+++.++.++
T Consensus 89 a~~l~~~-----~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk 163 (249)
T 2qk1_A 89 CDKLKTP-----GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIR 163 (249)
T ss_dssp HHHHCTT-----TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHH
T ss_pred HHhcccc-----cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHH
Confidence 98886 4 356 8999999999999999999999999999999999986533 24599999999999998888888
Q ss_pred HHHHHHHHHHHHHhcc---ccCChhhh-hhhhHHHHHHHhcCCCCCCcc-chHHHHHHHHHHHhcc-ccccchHHH
Q 006912 538 RIVYDAIGTLADAVGF---ELNQPVYL-DILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGA-GFTQFAQPV 607 (626)
Q Consensus 538 ~~~~~~l~~i~~~~~~---~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~-~~~l~~~~~l~~~~g~-~f~~~~~~i 607 (626)
..++.+|+.++...+. .+. +|+ +.++|.+.+.+.. .++.. ..+.+|++.+++.+|. .|.||++.+
T Consensus 164 ~~al~~l~~~~~~~~~~~~~l~--~~l~~~iip~l~~~l~D---~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 164 MECTQLFNASMKEEKDGYSTLQ--RYLKDEVVPIVIQIVND---TQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHHHHHHHCCSCSHHHH--HHHTTTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCcchhHH--HHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 8999999999998873 343 588 9999998887753 34444 5899999999999998 588888875
No 41
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.71 E-value=1.4e-15 Score=158.47 Aligned_cols=360 Identities=15% Similarity=0.147 Sum_probs=246.2
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCC-ChHHHHHHHHHHHHHHhcc
Q 006912 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLM 211 (626)
Q Consensus 133 l~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vr~~al~~l~~~~~~~ 211 (626)
++.+.+.+.++++..+..|+..++++...-...-.. .-.-.+++|.|+++|.+. ++.++..|+.+|..++...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~------~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPID------NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHH------HHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHH------HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 788899999999999999999999886533211000 011256899999999764 5899999999999998765
Q ss_pred chHHHHhHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhccCCC-----hHHHHHHHh
Q 006912 212 PSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTD-----DDVALEACE 284 (626)
Q Consensus 212 ~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~-----~~v~~~a~~ 284 (626)
++.....+. ..++.|+.++.+++.+++..++.+|..++...+..-...+. ..++.++..+...+ ..+...+..
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 543332222 46899999999999999999999999998765542111111 23344444444332 345666777
Q ss_pred HHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCcccccc
Q 006912 285 FWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364 (626)
Q Consensus 285 ~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (626)
.+..++....... .......++|.+...+...++
T Consensus 213 ~L~nl~~~~~~~~-~~~~~~~~lp~L~~LL~~~~~--------------------------------------------- 246 (510)
T 3ul1_B 213 TLSNLCRNKNPAP-PLDAVEQILPTLVRLLHHNDP--------------------------------------------- 246 (510)
T ss_dssp HHHHHHCCCSSCC-CHHHHHHHHHHHHHHTTCSCH---------------------------------------------
T ss_pred HHHHHhhcccchh-HHHHHHhHHHHHHHHHhcCCH---------------------------------------------
Confidence 7888877532211 112345566776665543211
Q ss_pred ccHHHHHHHHHHHHHhhcCc--ch--HHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH-HHHHHHHh
Q 006912 365 WNLRKCSAAALDVLSNVFGD--EI--LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLI 439 (626)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~--~~--~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~l~ 439 (626)
.++..+..+|..++..... .. -..+++.+.+++.+++ +.++..++.+++.++.+........+ ...++.+.
T Consensus 247 -~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~ 322 (510)
T 3ul1_B 247 -EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE---LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP 322 (510)
T ss_dssp -HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC
T ss_pred -HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC---hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHH
Confidence 2677788888887654322 11 1246788888999988 99999999999999876543221111 12567778
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchH-
Q 006912 440 PLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL- 518 (626)
Q Consensus 440 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l- 518 (626)
..+.++++.+|..|+|++++++..-... ...-.-..+++.++..+.+.+..+|..|+++|.+++.........++
T Consensus 323 ~LL~~~~~~v~~~A~~aL~nl~a~~~~~----~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~ 398 (510)
T 3ul1_B 323 SLLTNPKTNIQKEATWTMSNITAGRQDQ----IQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV 398 (510)
T ss_dssp -CTTCSSHHHHHHHHHHHHHHTTSCHHH----HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCcHHH----HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 8888999999999999999998543221 01111235788899999999999999999999999976543222222
Q ss_pred -HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Q 006912 519 -EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (626)
Q Consensus 519 -~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~ 552 (626)
..+++.|..++...+.+.+..++++|.++.+...
T Consensus 399 ~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 399 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 2456777888888888888899999999987654
No 42
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.71 E-value=7.3e-15 Score=154.00 Aligned_cols=363 Identities=15% Similarity=0.141 Sum_probs=248.8
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHH
Q 006912 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFI 208 (626)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~ 208 (626)
...++.+.+.+.++++..+..++..++.+...-...... .-.-.+++|.|+++|.. .++.++..|+.+|..++
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~------~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia 148 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPID------NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIA 148 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHH------HHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHH------HHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 334788888999999999999999998876432211000 01125789999999975 56899999999999998
Q ss_pred hccchHHHHhHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhccCCC-----hHHHHH
Q 006912 209 MLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTD-----DDVALE 281 (626)
Q Consensus 209 ~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~-----~~v~~~ 281 (626)
...+......+. ..++.|+.++.+++.+++..|+.+|..++...+..-...+. ..++.++..+...+ ..+...
T Consensus 149 ~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~ 228 (529)
T 3tpo_A 149 SGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 228 (529)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHH
Confidence 775543322222 46889999999999999999999999998765542211111 23444555554332 345666
Q ss_pred HHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccc
Q 006912 282 ACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361 (626)
Q Consensus 282 a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (626)
+...+..++....... .......++|.+...+...++
T Consensus 229 a~~~L~nl~~~~~~~~-~~~~~~~~lp~L~~LL~~~~~------------------------------------------ 265 (529)
T 3tpo_A 229 LTWTLSNLCRNKNPAP-PLDAVEQILPTLVRLLHHNDP------------------------------------------ 265 (529)
T ss_dssp HHHHHHHHHCCCTTCC-CHHHHHHHHHHHHHHTTSSCH------------------------------------------
T ss_pred HHHHHHHHHhcccchh-hHHHHhhHHHHHHHHhcCCcH------------------------------------------
Confidence 7777888877532111 112345566777665543221
Q ss_pred cccccHHHHHHHHHHHHHhhcCc--ch--HHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH-HHHHH
Q 006912 362 VNVWNLRKCSAAALDVLSNVFGD--EI--LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVA 436 (626)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~--~~--~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~ 436 (626)
.++..+..+|..++..... .. -..+++.+..++.+++ +.++..++.+++.++.+........+ ...++
T Consensus 266 ----~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~---~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~ 338 (529)
T 3tpo_A 266 ----EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE---LPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 338 (529)
T ss_dssp ----HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred ----HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC---hhHHHHHHHHHHHHHccchHHHHHHhhcccHH
Confidence 2567788888888764432 11 1346788888899988 99999999999999876543221111 23567
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccc
Q 006912 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAP 516 (626)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~ 516 (626)
.+...+.++++.+|..|+|+|++++..-... ...-.-..+++.++..+.+.+..+|..|+++|.+++......-..
T Consensus 339 ~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~----~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~ 414 (529)
T 3tpo_A 339 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQ----IQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIV 414 (529)
T ss_dssp GHHHHTTCSSHHHHHHHHHHHHHHHTSCHHH----HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcccHHH----HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 7888889999999999999999998643221 011112357888999999999999999999999998765432222
Q ss_pred hH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Q 006912 517 RL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (626)
Q Consensus 517 ~l--~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~ 552 (626)
++ ..+++.|..++...+.+.+..++++|..+.....
T Consensus 415 ~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 415 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 22 2356777888888888888899999999887653
No 43
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.70 E-value=2.2e-14 Score=149.40 Aligned_cols=386 Identities=13% Similarity=0.095 Sum_probs=259.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHh---cCC--------ChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhcc
Q 006912 17 ICRLLEQQISPSSTADKSQIWQQLQQYS---QFP--------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (626)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~---~~p--------~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~ 85 (626)
+.++++.+.|.|.+ .+.+|.+.+.++. .+| +.++.|..+|.. +.++.++..|+-.|.|...
T Consensus 59 i~~~v~~l~s~d~~-~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~--~~~~~lq~~Aa~aL~nias----- 130 (510)
T 3ul1_B 59 VEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK--TDCSPIQFESAWALTNIAS----- 130 (510)
T ss_dssp HHHHHHHHTSSCHH-HHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHhcCCCHH-HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC--CCCHHHHHHHHHHHHHHhc-----
Confidence 56777888899999 9999999998863 244 457788888864 6678999999999987643
Q ss_pred CChhHHHH-----HHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcC--c--hHHHHHHHHHHhccCCh-----hHHhHH
Q 006912 86 MSPSNQQY-----IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--G--WLELLQALVTCLDSNDI-----NHMEGA 151 (626)
Q Consensus 86 l~~~~~~~-----i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~--~--~~~ll~~l~~~l~~~~~-----~~r~~~ 151 (626)
-+++.+.. ..+.|+..|.+++..+|..++.+|++|+...+.. . -.+.++.+...+.+++. ..+..+
T Consensus 131 ~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a 210 (510)
T 3ul1_B 131 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210 (510)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHH
Confidence 23344333 3457888889999999999999999999653111 0 12346778888876543 244556
Q ss_pred HHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhH-HHHHHHHHHhc
Q 006912 152 MDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLS 230 (626)
Q Consensus 152 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~ 230 (626)
..++..++........ ......++|.+.+.+.+++.+++..|+.+|..+....+....... ..+++.+..++
T Consensus 211 ~~~L~nl~~~~~~~~~-------~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 283 (510)
T 3ul1_B 211 TWTLSNLCRNKNPAPP-------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283 (510)
T ss_dssp HHHHHHHHCCCSSCCC-------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhhcccchhH-------HHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh
Confidence 6677766654322110 123477899999999999999999999999998865433221111 14578888889
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHH
Q 006912 231 NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPV 309 (626)
Q Consensus 231 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~ 309 (626)
.+++..++..++.++..++..........+. ..++.+...+.+.+++++..|+..+..++... ....
T Consensus 284 ~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~--~~~~---------- 351 (510)
T 3ul1_B 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR--QDQI---------- 351 (510)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC--HHHH----------
T ss_pred cCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc--HHHH----------
Confidence 9999999999999999987655432221111 23344445566677777777777777765430 0000
Q ss_pred HhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHh
Q 006912 310 LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPT 389 (626)
Q Consensus 310 l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 389 (626)
.. + .-..
T Consensus 352 -----------------------------------------------------------~~-------v-------~~~g 358 (510)
T 3ul1_B 352 -----------------------------------------------------------QQ-------V-------VNHG 358 (510)
T ss_dssp -----------------------------------------------------------HH-------H-------HHTT
T ss_pred -----------------------------------------------------------HH-------H-------HhcC
Confidence 00 0 0013
Q ss_pred HHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHH--HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhh
Q 006912 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (626)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (626)
++|.+...+.+.+ +.+|..|+++|+.++.+.......++. .+++.++..+.++++.++..++++|.++.......
T Consensus 359 ~i~~Lv~lL~~~~---~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~ 435 (510)
T 3ul1_B 359 LVPFLVGVLSKAD---FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 435 (510)
T ss_dssp HHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCC---HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc
Confidence 5667777788888 999999999999998765322222222 25788889999999999999999999998765432
Q ss_pred cCCCchhhh---HH--HHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 006912 468 IGHQNGREQ---FE--KVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (626)
Q Consensus 468 ~~~~~~~~~---~~--~ll~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (626)
+ ....+ +. ..+..+-....+++..|+..|...|.+++.
T Consensus 436 -~--~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 436 -G--ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp -T--CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred -c--chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 0 11111 11 123344444446789999999998888763
No 44
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.69 E-value=1.9e-13 Score=155.21 Aligned_cols=518 Identities=12% Similarity=0.109 Sum_probs=302.6
Q ss_pred CCCCHHHHHHHHHHHHHH-hc-----CCC----hHHHHHHHHhhcC-CC-----CHHHHHHHHHHHHHHHHHhhccCChh
Q 006912 26 SPSSTADKSQIWQQLQQY-SQ-----FPD----FNNYLAFILARAE-GK-----SVEIRQAAGLLLKNNLRTAYKSMSPS 89 (626)
Q Consensus 26 s~d~~~~r~~a~~~L~~~-~~-----~p~----~~~~l~~il~~~~-~~-----~~~~r~~a~~~l~~~i~~~~~~l~~~ 89 (626)
+.+.. +|..|...|+.. .+ .++ .-..++..+.... +. ++.+|...+..+....+..|..
T Consensus 60 s~~~~-vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---- 134 (1049)
T 3m1i_C 60 STNPQ-SKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---- 134 (1049)
T ss_dssp CSCHH-HHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT----
T ss_pred CCCHH-HHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc----
Confidence 45666 999999999873 22 122 2234555554311 11 3678888888887777765542
Q ss_pred HHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcC-------------------cCchHHHHHHHHHHhcc-CChhHHh
Q 006912 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG-------------------IAGWLELLQALVTCLDS-NDINHME 149 (626)
Q Consensus 90 ~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~-------------------~~~~~~ll~~l~~~l~~-~~~~~r~ 149 (626)
....+...++..++ .+...+..+..++..+..... ....+.+++.+.+.+.+ ++..++.
T Consensus 135 ~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~ 213 (1049)
T 3m1i_C 135 NWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIV 213 (1049)
T ss_dssp TCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 22234555555554 344445555555555553210 11235555666666654 3567888
Q ss_pred HHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhcc-ch---------------
Q 006912 150 GAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM-PS--------------- 213 (626)
Q Consensus 150 ~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~-~~--------------- 213 (626)
.++.++..++...+.... ....+++.+++.+. +++.+|..|++||..++..- ++
T Consensus 214 ~aL~~l~~~l~wi~~~~~---------~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~ 283 (1049)
T 3m1i_C 214 ATLESLLRYLHWIPYRYI---------YETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQN 283 (1049)
T ss_dssp HHHHHHHHHTTTSCTHHH---------HSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHH---------hhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH
Confidence 888888877665442110 00223333332111 14455555555554444220 00
Q ss_pred -----------------------------------------------------HHHHhHHHHHHHHHHhcCCCCHHHHHH
Q 006912 214 -----------------------------------------------------ALFVSMDQYLQGLFLLSNDPSAEVRKL 240 (626)
Q Consensus 214 -----------------------------------------------------~~~~~~~~~l~~l~~~~~~~~~~~~~~ 240 (626)
...+.+..+++.++.....++.+++..
T Consensus 284 ~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~ 363 (1049)
T 3m1i_C 284 TLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKT 363 (1049)
T ss_dssp HHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 012223334555555556678889999
Q ss_pred HHHHHHHHHh------hCccchhhhHHHHHHHHHhhccCC-------------------Ch---HHHHHHHhHHHHhhcc
Q 006912 241 VCAAFNLLIE------VRPSFLEPHLRNLFEYMLQVNKDT-------------------DD---DVALEACEFWHSYFEA 292 (626)
Q Consensus 241 ~~~~l~~l~~------~~~~~~~~~l~~l~~~~~~~~~~~-------------------~~---~v~~~a~~~l~~l~~~ 292 (626)
+++.+..+++ .....+.+++..+++.++..+..+ +. ..+..+.+++..++..
T Consensus 364 ~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~ 443 (1049)
T 3m1i_C 364 TLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL 443 (1049)
T ss_dssp HHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHcc
Confidence 9999988877 234567788888888877654211 10 2244555566666543
Q ss_pred CCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHH
Q 006912 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (626)
Q Consensus 293 ~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~ 372 (626)
... +.+..+.+.+-..+.. ....|..|.++.
T Consensus 444 --~~~---~~l~~v~~~l~~~l~~--------------------------------------------~~~~W~~~eaal 474 (1049)
T 3m1i_C 444 --NVI---DTEEIMISKLARQIDG--------------------------------------------SEWSWHNINTLS 474 (1049)
T ss_dssp --CHH---HHHHHHHHHHHHHHTS--------------------------------------------SSCCHHHHHHHH
T ss_pred --CHH---HHHHHHHHHHHHHhCC--------------------------------------------CCCCHHHHHHHH
Confidence 111 1122222222111110 123488899999
Q ss_pred HHHHHHHhhcCcc----hHHhHHHHHHHhhcC-----CCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcC
Q 006912 373 AALDVLSNVFGDE----ILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD 443 (626)
Q Consensus 373 ~~l~~l~~~~~~~----~~~~l~~~l~~~l~~-----~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~ 443 (626)
.+++.++..+++. +++.+++.+...... ++ +.+|..++.++|.+++..... ..+++.+++.++..+.
T Consensus 475 ~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~---~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~ 550 (1049)
T 3m1i_C 475 WAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNK---AVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMH 550 (1049)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHH---HHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccch---HHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhc
Confidence 9999887766542 356666666554322 23 555656888999887654332 3678889999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhc---CCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc--ccccchH
Q 006912 444 DKFPLIRSISCWTLSRFSKFIVQDI---GHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA--EELAPRL 518 (626)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~--~~~~~~l 518 (626)
|+++.|+..|++++.++++.+.... .+....+|++.++..+...+.+....-......+++.++...+ +...+|+
T Consensus 551 ~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~ 630 (1049)
T 3m1i_C 551 ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLL 630 (1049)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999876431 1112248899999999888887666667788999999998776 2456777
Q ss_pred HHHHHHHHHHHhhh------------hHH---HHHHHHHHHHHHHHHhccccCChhhhhhhhHHH---------------
Q 006912 519 EIILQHLMMAFGKY------------QRR---NLRIVYDAIGTLADAVGFELNQPVYLDILMPPL--------------- 568 (626)
Q Consensus 519 ~~i~~~l~~~l~~~------------~~~---~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l--------------- 568 (626)
..+++.+...+... +.+ .....+++++.++.++|..|. ++++.+++.+
T Consensus 631 ~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~--p~~~~i~~~~l~~~~~~~~~~~~~~ 708 (1049)
T 3m1i_C 631 SDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFY--PQLGHIYYNMLQLYRAVSSMISAQV 708 (1049)
T ss_dssp HHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666554433211 011 112345666666666665553 2333333222
Q ss_pred ----------------------------------------------------HHHHhcCCCCCCccchHHHHHHHHHHHh
Q 006912 569 ----------------------------------------------------IAKWQQLPNSDKDLFPLLECFTSIAQAL 596 (626)
Q Consensus 569 ----------------------------------------------------~~~~~~~~~~~~~~~~~l~~~~~l~~~~ 596 (626)
+..+.+.. ........+.+++.++..+
T Consensus 709 ~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~-~~~~~~~~l~l~~~ii~~~ 787 (1049)
T 3m1i_C 709 AAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNV-PDARDAEVLNCMTTVVEKV 787 (1049)
T ss_dssp HHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSC-GGGCCTHHHHHHHHHHHHH
T ss_pred HccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC-cccccHHHHHHHHHHHHHH
Confidence 22221100 0000124788889999999
Q ss_pred ccccccchHHHHHHHHHHH
Q 006912 597 GAGFTQFAQPVFQRCINII 615 (626)
Q Consensus 597 g~~f~~~~~~i~~~l~~~l 615 (626)
|..+.||++.+++.+++..
T Consensus 788 ~~~~~~~l~~i~~~l~~~~ 806 (1049)
T 3m1i_C 788 GHMIPQGVILILQSVFECT 806 (1049)
T ss_dssp GGGCHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHH
Confidence 9999999999888887774
No 45
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=1.5e-15 Score=141.91 Aligned_cols=216 Identities=15% Similarity=0.129 Sum_probs=175.4
Q ss_pred chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcC-CCchHHHHHHHHHHHHHHHH
Q 006912 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKF 463 (626)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~ 463 (626)
++.+.+.+.+.+.+++.+ |..|.+|+..+..+++++++.....+.++++.+...+. |+++.||..|+.+++.++..
T Consensus 11 di~~~l~~~l~~~l~s~~---w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 11 DILSKMPKDFYDKLEEKK---WTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp CCGGGSCTTHHHHHTCSS---HHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHhhhccCC---HHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 444455556777888888 99999999999999988654334455788999999995 99999999999999999998
Q ss_pred HhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006912 464 IVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDA 543 (626)
Q Consensus 464 ~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~ 543 (626)
++.. ..+|...++|.++..+.|+++.||.+|+.++..+++..+ ++.+++.+...+++.++.++..++..
T Consensus 88 l~~~-----~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~ 156 (242)
T 2qk2_A 88 LAKR-----FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALF 156 (242)
T ss_dssp HGGG-----GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred Hhhh-----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 8653 678999999999999999999999999999999987542 57788888888888888888899999
Q ss_pred HHHHHHHhccc-cCChhhhhhhhHHHHHHHhcCCCCCCc-cchHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHH
Q 006912 544 IGTLADAVGFE-LNQPVYLDILMPPLIAKWQQLPNSDKD-LFPLLECFTSIAQALGAG-FTQFAQPVFQRCINIIQTQ 618 (626)
Q Consensus 544 l~~i~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~l~~~~~l~~~~g~~-f~~~~~~i~~~l~~~l~~~ 618 (626)
|+.++...+++ .. .+|++.++|.+...+.. ...+ ...+.+|++.++..+|.. |.||++.+-+.-...+...
T Consensus 157 l~~~l~~~~~~~~~-~~~l~~l~p~l~~~l~D---~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~ 230 (242)
T 2qk2_A 157 IARALTRTQPTALN-KKLLKLLTTSLVKTLNE---PDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKEC 230 (242)
T ss_dssp HHHHHTTCCGGGCC-HHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcc-HHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHH
Confidence 99988887644 32 25899999999888752 2333 358899999999999985 8899888766555555443
No 46
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.67 E-value=1e-13 Score=145.27 Aligned_cols=386 Identities=13% Similarity=0.095 Sum_probs=258.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHh---cCC--------ChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhc
Q 006912 16 EICRLLEQQISPSSTADKSQIWQQLQQYS---QFP--------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (626)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~a~~~L~~~~---~~p--------~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~ 84 (626)
.+.++++.+.|+|.+ .+.+|.+.+.++. .+| +.++.|+.+|.. +.++.++..|+-.|.+....
T Consensus 77 ~l~~lv~~l~s~d~~-~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~--~~~~~~q~~Aa~aL~nia~~--- 150 (529)
T 3tpo_A 77 SVEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK--TDCSPIQFESAWALTNIASG--- 150 (529)
T ss_dssp CHHHHHHHHTSSCHH-HHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC--TTCHHHHHHHHHHHHHHHTS---
T ss_pred HHHHHHHHhcCCCHH-HHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC--CCCHHHHHHHHHHHHHHHcC---
Confidence 356778888899988 9999999988753 244 456778888864 67789999999999876432
Q ss_pred cCChhHH-----HHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcC--c--hHHHHHHHHHHhccCCh-----hHHhH
Q 006912 85 SMSPSNQ-----QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--G--WLELLQALVTCLDSNDI-----NHMEG 150 (626)
Q Consensus 85 ~l~~~~~-----~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~--~--~~~ll~~l~~~l~~~~~-----~~r~~ 150 (626)
+++.. ....+.|+.+|.+++..+|..++.+|++|+...+.. . -.+.++.+...+.+++. .....
T Consensus 151 --~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~ 228 (529)
T 3tpo_A 151 --TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 228 (529)
T ss_dssp --CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHH
T ss_pred --CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHH
Confidence 22222 234567888889999999999999999999653111 0 02346778888876543 34556
Q ss_pred HHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhH-HHHHHHHHHh
Q 006912 151 AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLL 229 (626)
Q Consensus 151 ~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~ 229 (626)
+..++..++........ ......++|.+...+.+++++++..|+.+|..+....+....... ..+++.+..+
T Consensus 229 a~~~L~nl~~~~~~~~~-------~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~l 301 (529)
T 3tpo_A 229 LTWTLSNLCRNKNPAPP-------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 301 (529)
T ss_dssp HHHHHHHHHCCCTTCCC-------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHhcccchhh-------HHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHH
Confidence 66777777654332111 123477899999999999999999999999998876433221111 2457888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHH
Q 006912 230 SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVP 308 (626)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~ 308 (626)
+.+++..++..++.++..++..........+. ..++.+...+.+.+++++..|+..+..++... ....
T Consensus 302 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~--~~~~--------- 370 (529)
T 3tpo_A 302 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR--QDQI--------- 370 (529)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSC--HHHH---------
T ss_pred hcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhccc--HHHH---------
Confidence 99999999999999999988654432221111 23444555566667777777777777765431 0000
Q ss_pred HHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHH
Q 006912 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP 388 (626)
Q Consensus 309 ~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 388 (626)
.. + . -.
T Consensus 371 ------------------------------------------------------------~~-------v---~----~~ 376 (529)
T 3tpo_A 371 ------------------------------------------------------------QQ-------V---V----NH 376 (529)
T ss_dssp ------------------------------------------------------------HH-------H---H----HT
T ss_pred ------------------------------------------------------------HH-------H---H----hc
Confidence 00 0 0 01
Q ss_pred hHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHH--HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhh
Q 006912 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ 466 (626)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 466 (626)
.++|.+...+.+++ +.+|..|+++|+.++.+.......++. .+++.++..+.++++.++..++++|..+......
T Consensus 377 g~i~~Lv~lL~~~~---~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~ 453 (529)
T 3tpo_A 377 GLVPFLVGVLSKAD---FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 453 (529)
T ss_dssp THHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHhcCCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh
Confidence 35666777788888 999999999999998765322222222 2578889999999999999999999998865442
Q ss_pred hcCCCchhhhHHHH------HHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 006912 467 DIGHQNGREQFEKV------LMGLLKRILDTNKRVQEAACSAFATLEE 508 (626)
Q Consensus 467 ~~~~~~~~~~~~~l------l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (626)
. .....+... +..+.....+++..|+..|...|.+++.
T Consensus 454 ~----~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 454 L----GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp T----TCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred c----cChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 2 111112222 3334334446789999999999888764
No 47
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.66 E-value=2e-12 Score=136.99 Aligned_cols=443 Identities=11% Similarity=0.072 Sum_probs=265.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHH
Q 006912 18 CRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (626)
Q Consensus 18 ~~~l~~~~s~d~~~~r~~a~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~ 95 (626)
.++++.+.|+|.+ .|+.+.-++..+.+ +|+.....++.+.++ .+.++.+|-.|...+.+. ..++..+.+.
T Consensus 77 ~~vvkl~~s~~~~-~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i-------~~~e~~~~l~ 148 (621)
T 2vgl_A 77 MEAVNLLSSNRYT-EKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANV-------GSREMAEAFA 148 (621)
T ss_dssp HHHHHGGGCSCHH-HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH-------CCHHHHHHHT
T ss_pred HHHHHHhcCCCHH-HHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc-------CCHHHHHHHH
Confidence 3455555677777 88888888877644 566655555555432 366788888887777543 2466677788
Q ss_pred HhHhhhh--hCCcHHHHHHHHHHHHHHHhhcCcCchH--HHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCC
Q 006912 96 SELLPCL--GAADRHIRSTVGTIVSVVVQLGGIAGWL--ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (626)
Q Consensus 96 ~~L~~~l--~~~~~~vr~~~~~~l~~i~~~~~~~~~~--~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~ 171 (626)
..+.+++ .+.++.||+.|+.++..+.+.++ +..+ ++++.+.+++.+.++.++.+++.++..++...+....
T Consensus 149 ~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~---- 223 (621)
T 2vgl_A 149 GEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK---- 223 (621)
T ss_dssp THHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT----
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH----
Confidence 8888888 88999999999999999998753 3333 6677888888899999999999999999887664321
Q ss_pred CCccchhhhhHHHHHHhcCCC-------------ChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCC-C----
Q 006912 172 GLAECPINIFLPRLLQFFQSP-------------HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND-P---- 233 (626)
Q Consensus 172 ~~~~~~~~~il~~l~~~l~~~-------------~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~---- 233 (626)
...+.++..+.+.+..+ ++-.+...++.+..+....++.....+.+++..+++.+.+ +
T Consensus 224 ----~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~ 299 (621)
T 2vgl_A 224 ----TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKK 299 (621)
T ss_dssp ----THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSS
T ss_pred ----HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccc
Confidence 22344444444443221 4567777777776665432233444444555555543321 1
Q ss_pred ----C--HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhH
Q 006912 234 ----S--AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLV 307 (626)
Q Consensus 234 ----~--~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li 307 (626)
+ ..+..++++++..+. + ....+...+..+...+.+.+..+|..++..+..++........+.++...++
T Consensus 300 l~~~n~~~aVl~ea~~~i~~l~---~--~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~ 374 (621)
T 2vgl_A 300 VQHSNAKNAVLFEAISLIIHHD---S--EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVI 374 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---C--CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhcC---C--cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 1 245555555555542 1 1233344555555666778889999999999998765221233333333333
Q ss_pred HHHhhhcc-cCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcch
Q 006912 308 PVLLSNMI-YADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI 386 (626)
Q Consensus 308 ~~l~~~l~-~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 386 (626)
. .+. +.+ .++|..+.+.+..+ ..+.-
T Consensus 375 ~----~L~~d~d----------------------------------------------~~Ir~~aL~lL~~l---~~~~N 401 (621)
T 2vgl_A 375 N----ALKTERD----------------------------------------------VSVRQRAVDLLYAM---CDRSN 401 (621)
T ss_dssp H----HHTTCCC----------------------------------------------HHHHHHHHHHHHHH---CCHHH
T ss_pred H----HhccCCC----------------------------------------------HhHHHHHHHHHHHH---cChhh
Confidence 3 222 111 13555544444433 33333
Q ss_pred HHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHH---------------------------------H
Q 006912 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS---------------------------------E 433 (626)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~---------------------------------~ 433 (626)
+..++..+.+++.+.+ ...|..++.+++.++.........++. .
T Consensus 402 v~~Iv~eL~~yl~~~d---~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~ 478 (621)
T 2vgl_A 402 AQQIVAEMLSYLETAD---YSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGY 478 (621)
T ss_dssp HHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHH
Confidence 4566666666666666 677777777777766543222111111 1
Q ss_pred HHHHHhhhcCCCc--hHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc
Q 006912 434 IVAFLIPLLDDKF--PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (626)
Q Consensus 434 l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~ 511 (626)
.+..+...+.++. ..+...++|.+|.++..+.+. .... -..++..+.+.+.+.++.||..+..|+.++....+
T Consensus 479 ~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~---~~~~--p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p 553 (621)
T 2vgl_A 479 AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGD---PRSS--PLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP 553 (621)
T ss_dssp HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSS---TTSC--HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhccc---CCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh
Confidence 2233444455442 345567779999999877642 0000 12445566677777889999999999999987653
Q ss_pred ccccchHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHH
Q 006912 512 EELAPRLEIILQHLMMAFG--KYQRRNLRIVYDAIGTL 547 (626)
Q Consensus 512 ~~~~~~l~~i~~~l~~~l~--~~~~~~~~~~~~~l~~i 547 (626)
+ ..+.+..+ +..... +.+.+++..+.+....+
T Consensus 554 ~-~~~~i~~~---l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 554 E-VKATIQDV---LRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp G-GHHHHHHH---HSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHH---HHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 2 22222222 222222 44567777777776655
No 48
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.65 E-value=1.9e-13 Score=147.10 Aligned_cols=375 Identities=11% Similarity=0.053 Sum_probs=250.3
Q ss_pred HHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcC----chHHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhhchhcccc
Q 006912 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA----GWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDS 168 (626)
Q Consensus 94 i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~----~~~~ll~~l~~~l~~~-~~~~r~~~l~~l~~l~~~~~~~~~~ 168 (626)
....|+..|.++++.+|..++.+++.++...... .-++.++.+.+.+.++ ++.++..++.+|..++...... .
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~-~- 92 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-L- 92 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH-H-
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH-H-
Confidence 4566777888899999999999999999764211 1257788999998864 7899999999999877653211 0
Q ss_pred CCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhH-HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006912 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (626)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 247 (626)
. -.-...++.+++.++++++.++..|+.+|..+....+....... ...++.+..++.++++.++..++.+|..
T Consensus 93 ~------i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 93 A------IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp H------HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred H------HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 0 11146889999999999999999999999999876433222221 2568999999998888888888899988
Q ss_pred HHhhCccchhhhH-HHHHHHHHhhccCC-ChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhh
Q 006912 248 LIEVRPSFLEPHL-RNLFEYMLQVNKDT-DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVE 325 (626)
Q Consensus 248 l~~~~~~~~~~~l-~~l~~~~~~~~~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~ 325 (626)
++...++.-.... ...++.++..+.+. .+.++..++..+..++..+.....+. -...++.++..+....
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~--~~g~l~~L~~ll~~~~------- 237 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV--EAGGMQALGLHLTDPS------- 237 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHH--HTTHHHHHHTTTTCSC-------
T ss_pred HHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHH--HCCCHHHHHHHHhcCC-------
Confidence 8864332211111 13344555555443 45677788888888876532222111 1235666655543211
Q ss_pred hhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-chHHhHHHHHHHhhcCCCCC
Q 006912 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDE 404 (626)
Q Consensus 326 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~ 404 (626)
-.++..+..+|..++...+. .....+++.+.+.+.+++
T Consensus 238 ---------------------------------------~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d-- 276 (644)
T 2z6h_A 238 ---------------------------------------QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-- 276 (644)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSC--
T ss_pred ---------------------------------------HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCC--
Confidence 13678888999998876544 445578889999999888
Q ss_pred ChhHHHHHHHHHHHHHccCccchhhhH-HHHHHHHhhhcCCC--chHHHHHHHHHHHHHHHHHhhhcCCCchh--hhHHH
Q 006912 405 AWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDK--FPLIRSISCWTLSRFSKFIVQDIGHQNGR--EQFEK 479 (626)
Q Consensus 405 ~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~ 479 (626)
+.+|..++.+|+.++.+..+...... ...++.++..+.+. .+.||..|+++|++++...+.. .... -....
T Consensus 277 -~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~---~~~q~~v~~~~ 352 (644)
T 2z6h_A 277 -INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA---EMAQNAVRLHY 352 (644)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH---HHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchH---HHHHHHHHHcc
Confidence 99999999999999886432211111 12567777777652 3799999999999997422110 0001 11234
Q ss_pred HHHHHHHHhccCC-HHHHHHHHHHHHHHHHHhcccccch-HHHHHHHHHHHHhh
Q 006912 480 VLMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPR-LEIILQHLMMAFGK 531 (626)
Q Consensus 480 ll~~l~~~l~d~~-~~v~~~a~~al~~l~~~~~~~~~~~-l~~i~~~l~~~l~~ 531 (626)
.++.+.+.+.+++ +.++..|+++|.+++..-... ... -..+++.|..++..
T Consensus 353 ~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~ 405 (644)
T 2z6h_A 353 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVR 405 (644)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHH
T ss_pred ChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhc
Confidence 6888889888765 799999999999987532111 111 12345555555554
No 49
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.63 E-value=4.2e-12 Score=141.04 Aligned_cols=242 Identities=10% Similarity=0.010 Sum_probs=173.2
Q ss_pred cccHHHHHHHHHHHHHhhcCc---------chHHhHHHHHHHhhc-----CCCCCChhHHHHHHHHHHHHHccCccchhh
Q 006912 364 VWNLRKCSAAALDVLSNVFGD---------EILPTLMPVIQAKLS-----ASGDEAWKDREAAVLALGAIAEGCIKGLYP 429 (626)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~---------~~~~~l~~~l~~~l~-----~~~~~~~~~r~aal~~l~~l~~~~~~~~~~ 429 (626)
.|..+.++.-++..++..+.. ..++.+++.+...++ .++ +.+|..++.+++..++..... ..
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~h---p~V~~~~~~~l~rys~~~~~~-~~ 531 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPH---PLVQLLYMEILVRYASFFDYE-SA 531 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCC---HHHHHHHHHHHHHTGGGGGTC-CT
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHHHHHHHHHhcC-ch
Confidence 488899999999999888653 346678888887776 455 999999999999999877532 36
Q ss_pred hHHHHHHHHhh--hcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccC----------------
Q 006912 430 HLSEIVAFLIP--LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT---------------- 491 (626)
Q Consensus 430 ~l~~l~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~---------------- 491 (626)
+++.+++.++. ++.|+++.||.+|+.++.++++.+... ..+|++.++..+-..+.-.
T Consensus 532 ~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~-----L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 532 AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ-----VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT-----CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH-----hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence 88999999999 999999999999999999999988754 5678888888776665521
Q ss_pred -----CHHHHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHhh----hhH----H-HHHHHHHHHHHHHHHhccc
Q 006912 492 -----NKRVQEAACSAFATLEEEAAE---ELAPRLEIILQHLMMAFGK----YQR----R-NLRIVYDAIGTLADAVGFE 554 (626)
Q Consensus 492 -----~~~v~~~a~~al~~l~~~~~~---~~~~~l~~i~~~l~~~l~~----~~~----~-~~~~~~~~l~~i~~~~~~~ 554 (626)
...-+.....+++.++...+. ....|+..+++.+..-++. ... . .....+.+++.+++.....
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~ 686 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPAR 686 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSC
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcc
Confidence 012467789999999987642 3345666665555444432 211 1 2225677888888765321
Q ss_pred cC--Ch--hhhhhhhHHHHHHHhcCCCCCCccchHHHHHHHHHHHhccccccchHHHHHHHHHH
Q 006912 555 LN--QP--VYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINI 614 (626)
Q Consensus 555 ~~--~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~~ 614 (626)
-. .| ..+.+.++.++..+.....+..-+.++..++.++..++|..+.|+++.++..++..
T Consensus 687 ~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~ 750 (980)
T 3ibv_A 687 GSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNS 750 (980)
T ss_dssp C-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhc
Confidence 00 01 24456666666666655422222357889999999999999999999999998854
No 50
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=3.8e-14 Score=132.33 Aligned_cols=191 Identities=17% Similarity=0.132 Sum_probs=164.6
Q ss_pred cccccHHHHHHHHHHHHHhhcCc---chHHhHHHHHHHhhc-CCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHH
Q 006912 362 VNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAF 437 (626)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~ 437 (626)
+..|..|..|...+..+....+. ..+..+++.+...+. +++ ..+|.+|+.+++.++...+..+.+++..++|.
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~---~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ 102 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN---VVLVAMAGKCLALLAKGLAKRFSNYASACVPS 102 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44699999999999999887432 234678888999995 888 99999999999999998888888999999999
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcc--ccc
Q 006912 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE--ELA 515 (626)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~--~~~ 515 (626)
++..+.|+++.||.+|+.++..++... .+..+++.+...+++.++.+|..++..|+.++...++ .+.
T Consensus 103 ll~~l~d~~~~vr~~a~~aL~~~~~~~-----------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 103 LLEKFKEKKPNVVTALREAIDAIYAST-----------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHTTS-----------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 999999999999999999999887632 2467889999999999999999999999999888753 467
Q ss_pred chHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHH
Q 006912 516 PRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPP 567 (626)
Q Consensus 516 ~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~ 567 (626)
+|++.+++.+..++.+.+.+++..+.++++.+...+|.+.+. +|++.+=+.
T Consensus 172 ~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~-~~l~~L~~~ 222 (242)
T 2qk2_A 172 KLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVT-PLLADVDPL 222 (242)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHG-GGGTTSCHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHH-HHHHhcCHH
Confidence 899999999999999999999999999999999999987433 477766443
No 51
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.60 E-value=4.5e-11 Score=126.61 Aligned_cols=433 Identities=12% Similarity=0.061 Sum_probs=274.5
Q ss_pred CCHHHHHHHHHHHHHHh---c-CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhh
Q 006912 28 SSTADKSQIWQQLQQYS---Q-FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG 103 (626)
Q Consensus 28 d~~~~r~~a~~~L~~~~---~-~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~ 103 (626)
|.. .|+.+-..|.-+. . -+......+.++. +.+...|+.+-+.+.... .-+++...-+.+.+.+-++
T Consensus 51 ~~~-~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~---s~~~~~Krl~YL~l~~~~-----~~~~e~~~L~iN~l~kDl~ 121 (621)
T 2vgl_A 51 DGY-SKKKYVCKLLFIFLLGHDIDFGHMEAVNLLS---SNRYTEKQIGYLFISVLV-----NSNSELIRLINNAIKNDLA 121 (621)
T ss_dssp CHH-HHHHHHHHHHHHHHHSCCCCSCHHHHHHGGG---CSCHHHHHHHHHHHHHSC-----CCCHHHHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHHHHHHcCCCCchhHHHHHHHhc---CCCHHHHHHHHHHHHHHc-----cCCcHHHHHHHHHHHHhcC
Confidence 444 5555555554432 1 1112233444332 678889999888886433 3456666666778888889
Q ss_pred CCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHh--ccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhh
Q 006912 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL--DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (626)
Q Consensus 104 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l--~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~i 181 (626)
++++.+|-.+..+++.+.. +...+.+.+.+.+++ .+.++.+|..|+.++..+++..++.+.. ..+
T Consensus 122 ~~n~~ir~lALr~L~~i~~---~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~----------~~~ 188 (621)
T 2vgl_A 122 SRNPTFMGLALHCIANVGS---REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM----------GDW 188 (621)
T ss_dssp SCCHHHHHHHHHHHHHHCC---HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC----------CSC
T ss_pred CCCHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc----------hhH
Confidence 9999999999999888853 456788999999999 8899999999999999999977754321 367
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCC-------------CCHHHHHHHHHHHHHH
Q 006912 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND-------------PSAEVRKLVCAAFNLL 248 (626)
Q Consensus 182 l~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-------------~~~~~~~~~~~~l~~l 248 (626)
++.+.+.+.|+++.|+.+|+.++..+....|..+.+.++.+++.+.+++.. +++-.+...++.+..+
T Consensus 189 ~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~ 268 (621)
T 2vgl_A 189 TSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCY 268 (621)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGS
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHh
Confidence 888999999999999999999999998876665544555555555544321 1466677777776665
Q ss_pred HhhCccchhhhHHHHHHHHHhhcc---------CC--ChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccC
Q 006912 249 IEVRPSFLEPHLRNLFEYMLQVNK---------DT--DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA 317 (626)
Q Consensus 249 ~~~~~~~~~~~l~~l~~~~~~~~~---------~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~ 317 (626)
...........+.+++..++..+. +. ...|...|+.++..+.. .. +.....+..+...+...
T Consensus 269 ~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~---~~----~~~~~~~~~L~~~L~~~ 341 (621)
T 2vgl_A 269 PPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS---EP----NLLVRACNQLGQFLQHR 341 (621)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC---CH----HHHHHHHHHHHHHSSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC---cH----HHHHHHHHHHHHHhcCC
Confidence 543222223333334443333221 11 22567777777666632 11 23334444444443321
Q ss_pred chhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-chHHhHHHHHHH
Q 006912 318 DDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQA 396 (626)
Q Consensus 318 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~ 396 (626)
+ -++|..+..++..++...+. ..+....+.+..
T Consensus 342 ~----------------------------------------------~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~ 375 (621)
T 2vgl_A 342 E----------------------------------------------TNLRYLALESMCTLASSEFSHEAVKTHIETVIN 375 (621)
T ss_dssp C----------------------------------------------HHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHH
T ss_pred C----------------------------------------------cchHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 1 14788899999988877653 455566667777
Q ss_pred hhc-CCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhh
Q 006912 397 KLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGRE 475 (626)
Q Consensus 397 ~l~-~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 475 (626)
.+. +++ ..+|..++..+..++.. ..+..++..+...+.+.+...|..++..++.++..+++. ...
T Consensus 376 ~L~~d~d---~~Ir~~aL~lL~~l~~~------~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~-----~~~ 441 (621)
T 2vgl_A 376 ALKTERD---VSVRQRAVDLLYAMCDR------SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD-----YTW 441 (621)
T ss_dssp HHTTCCC---HHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS-----THH
T ss_pred HhccCCC---HhHHHHHHHHHHHHcCh------hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc-----HHH
Confidence 777 888 99999999999888753 345666777777777778888988889999888655421 111
Q ss_pred hH---------------------------------HHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHhccc--ccchH
Q 006912 476 QF---------------------------------EKVLMGLLKRILDTN--KRVQEAACSAFATLEEEAAEE--LAPRL 518 (626)
Q Consensus 476 ~~---------------------------------~~ll~~l~~~l~d~~--~~v~~~a~~al~~l~~~~~~~--~~~~l 518 (626)
++ ...+..++..+.++. ..+-..++|.+|.+.....+. +.|
T Consensus 442 ~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p-- 519 (621)
T 2vgl_A 442 YVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSP-- 519 (621)
T ss_dssp HHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCH--
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCH--
Confidence 11 122333444455432 234455667777776554321 111
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 006912 519 EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (626)
Q Consensus 519 ~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~ 551 (626)
..++..+...+...+..++..++.++..+....
T Consensus 520 ~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~ 552 (621)
T 2vgl_A 520 LIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF 552 (621)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC
Confidence 233444454455555667778888887776543
No 52
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.3e-14 Score=133.03 Aligned_cols=195 Identities=13% Similarity=0.126 Sum_probs=165.0
Q ss_pred cccccHHHHHHHHHHH-HHhhcCc-----chHHhHHHHHHHhh-cCCCCCChhHHHHHHHHHHHHHccCc-cchh-hhHH
Q 006912 362 VNVWNLRKCSAAALDV-LSNVFGD-----EILPTLMPVIQAKL-SASGDEAWKDREAAVLALGAIAEGCI-KGLY-PHLS 432 (626)
Q Consensus 362 ~~~~~~r~~a~~~l~~-l~~~~~~-----~~~~~l~~~l~~~l-~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~-~~l~ 432 (626)
+..|..|+.|...+.. +....+. .-...++..+.+.+ ++++ ..+|.+|+.+++.++.++. +.+. +|..
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n---~~v~~~A~~al~~la~~l~~~~f~~~y~~ 103 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN---IQAVALAAQSVELICDKLKTPGFSKDYVS 103 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHHHHHCTTTSCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHHHHhcccccccHHHHH
Confidence 4569999999999988 7654322 12346788888888 6888 9999999999999999988 7888 9999
Q ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc-
Q 006912 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA- 511 (626)
Q Consensus 433 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~- 511 (626)
.++|.++..++|..+.||.++..++..+++.+.+. ....+++.+++.++..+++.++.+|..++.+|..+++..+
T Consensus 104 ~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~----~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 104 LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL----ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT----CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc----ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999876422 1223488899999999999999999999999999999987
Q ss_pred --ccccchH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccCChhhhhhh
Q 006912 512 --EELAPRL-EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDIL 564 (626)
Q Consensus 512 --~~~~~~l-~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l 564 (626)
..+.+|+ +.+++.+..++.+.+..++..++++++.+...+|++-+. +|++.+
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~-p~l~~L 234 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFV-KTLEHL 234 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGH-HHHHHS
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHH
Confidence 4578999 999999999999999999999999999999999986332 366554
No 53
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.59 E-value=4.6e-13 Score=141.13 Aligned_cols=384 Identities=11% Similarity=0.053 Sum_probs=252.3
Q ss_pred HHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcC----chHHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhhchhcc
Q 006912 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA----GWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVL 166 (626)
Q Consensus 92 ~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~----~~~~ll~~l~~~l~~~-~~~~r~~~l~~l~~l~~~~~~~~ 166 (626)
....+.|+..|.++++.+|..++.++..++...... .-++.++.+.+.+.++ ++.++..++.+|..+......
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~-- 93 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG-- 93 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH--
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh--
Confidence 345667788888899999999999999999654211 1246788888888754 889999999999998764221
Q ss_pred ccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHh-HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006912 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDPSAEVRKLVCAAF 245 (626)
Q Consensus 167 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~l 245 (626)
... -.-.+.+|.+.+.++++++.++..|+.+|..+....+..-... -...++.+..++.+++++++..++.+|
T Consensus 94 ~~~------i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 94 LLA------IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167 (529)
T ss_dssp HHH------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred HHH------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 100 1124688999999999999999999999999987644322111 135688999999988999999999999
Q ss_pred HHHHhhCccchhhhHH-HHHHHHHhhccCC-ChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhh
Q 006912 246 NLLIEVRPSFLEPHLR-NLFEYMLQVNKDT-DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (626)
Q Consensus 246 ~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~ 323 (626)
..+....++.-..... ..++.++..+.+. .+..+..+...+..++..+.....+. -...++.++..+...+
T Consensus 168 ~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~g~~~~L~~ll~~~~----- 240 (529)
T 1jdh_A 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV--EAGGMQALGLHLTDPS----- 240 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHH--HTTHHHHHHTTTTSSC-----
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHH--HCCCHHHHHHHHhCCC-----
Confidence 8887644322111111 2334444444433 34556667778888876532222111 1245666655543211
Q ss_pred hhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-chHHhHHHHHHHhhcCCC
Q 006912 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASG 402 (626)
Q Consensus 324 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~ 402 (626)
..++..+..++..++...+. .....++|.+.+++.+++
T Consensus 241 -----------------------------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~ 279 (529)
T 1jdh_A 241 -----------------------------------------QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD 279 (529)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC
T ss_pred -----------------------------------------hHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCC
Confidence 13677788999998877654 445578888999998888
Q ss_pred CCChhHHHHHHHHHHHHHccCccchhhhH-HHHHHHHhhhcCC--CchHHHHHHHHHHHHHHHHHhhhcCCCch--hhhH
Q 006912 403 DEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDD--KFPLIRSISCWTLSRFSKFIVQDIGHQNG--REQF 477 (626)
Q Consensus 403 ~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~ 477 (626)
+.+|..++.+++.++.+..+...... ...++.++..+.+ +++.+|..|+++++.++...+.. ... .-.-
T Consensus 280 ---~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~i~~ 353 (529)
T 1jdh_A 280 ---INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA---EMAQNAVRL 353 (529)
T ss_dssp ---HHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH---HHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchH---HHHHHHHHH
Confidence 99999999999999876432221111 1256777777754 45899999999999997532110 000 1111
Q ss_pred HHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHhcccccchH-HHHHHHHHHHHhhhhHHHHH
Q 006912 478 EKVLMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPRL-EIILQHLMMAFGKYQRRNLR 538 (626)
Q Consensus 478 ~~ll~~l~~~l~d~~-~~v~~~a~~al~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~~~ 538 (626)
...++.+...+.+++ +.++..++++|.+++..-... .... ..+++.|...+...+..+++
T Consensus 354 ~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~ 415 (529)
T 1jdh_A 354 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQR 415 (529)
T ss_dssp TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred cCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHHhHHHHH
Confidence 235788888888776 699999999999998532111 1111 24566667766655444443
No 54
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.57 E-value=8.4e-11 Score=130.73 Aligned_cols=474 Identities=11% Similarity=0.070 Sum_probs=286.7
Q ss_pred HHHHHHHHHHHHh------cCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh--h--ccCChhHHHHHHH-----
Q 006912 32 DKSQIWQQLQQYS------QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA--Y--KSMSPSNQQYIKS----- 96 (626)
Q Consensus 32 ~r~~a~~~L~~~~------~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~--~--~~l~~~~~~~i~~----- 96 (626)
+|++....+..+. ..|+++..+...+. .++..+..+..+|+...... + ..+....+..++.
T Consensus 116 i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~----~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~ 191 (1023)
T 4hat_C 116 LINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE 191 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTT----TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhchHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 5555666666542 24555555555443 24455555555555433322 2 2234433333433
Q ss_pred ------hHhhhhh-CCcHHHHHHHHHHHHHHHhhcCcCch--HHHHHHHH-HHhccCChhHHhHHHHHHHHHhhh-c-hh
Q 006912 97 ------ELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGW--LELLQALV-TCLDSNDINHMEGAMDALSKICED-I-PQ 164 (626)
Q Consensus 97 ------~L~~~l~-~~~~~vr~~~~~~l~~i~~~~~~~~~--~~ll~~l~-~~l~~~~~~~r~~~l~~l~~l~~~-~-~~ 164 (626)
.+...+. ..+..+...+.++++....+.+.+.. +.+++.+. +.+. ++..|..|+.||..++.. . ++
T Consensus 192 ~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~ 269 (1023)
T 4hat_C 192 FEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQD 269 (1023)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSS
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCc
Confidence 2333443 34556667777788777765432211 35777777 7664 567999999999999862 2 11
Q ss_pred --ccccCCCCCccchhhhhHHHHHHhc------------------CCCChHHHHHHHHHHHHHHhccc------hHHHHh
Q 006912 165 --VLDSDVPGLAECPINIFLPRLLQFF------------------QSPHTSLRKLSLGSVNQFIMLMP------SALFVS 218 (626)
Q Consensus 165 --~~~~~~~~~~~~~~~~il~~l~~~l------------------~~~~~~vr~~al~~l~~~~~~~~------~~~~~~ 218 (626)
... ..+..+++.++..+ .+.+.+....-++.+..+.+.-. +.+.+.
T Consensus 270 ~~~~~--------~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~ 341 (1023)
T 4hat_C 270 NDLIK--------RQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLREL 341 (1023)
T ss_dssp CHHHH--------HHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHH
T ss_pred hHHHH--------HHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHH
Confidence 010 11222222222111 12234444445555555443311 122333
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhC------ccchhhhHHHHHHHHHhhccCCC-----------------
Q 006912 219 MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR------PSFLEPHLRNLFEYMLQVNKDTD----------------- 275 (626)
Q Consensus 219 ~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~~~l~~l~~~~~~~~~~~~----------------- 275 (626)
+...+..++.....++.++.+.+++.+..+.+.. ...+.+++..++..++..+.-++
T Consensus 342 l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~ 421 (1023)
T 4hat_C 342 LLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFV 421 (1023)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSS
T ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhc
Confidence 3334556777777778899999999998887642 24577888888888887654322
Q ss_pred ---hH-HHHHHH-hHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCC
Q 006912 276 ---DD-VALEAC-EFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHG 350 (626)
Q Consensus 276 ---~~-v~~~a~-~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 350 (626)
++ ...... ++|..++.. ... ..+..+++.+...+..
T Consensus 422 ~d~d~~~~f~~~Rd~L~~l~~l--~~~---~~~~~~~~~l~~~l~~---------------------------------- 462 (1023)
T 4hat_C 422 KESDTIQLYKSEREVLVYLTHL--NVI---DTEEIMISKLARQIDG---------------------------------- 462 (1023)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHH--CHH---HHHHHHHHHHHHHHSS----------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHhcc--CHH---HHHHHHHHHHHHHhcC----------------------------------
Confidence 00 000000 222222211 000 1111122222111100
Q ss_pred CCCCCCCCccccccccHHHHHHHHHHHHHhhcCc----chHHhHHHHHHHhhcC-----CCCCChhHHHHHHHHHHHHHc
Q 006912 351 SENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAE 421 (626)
Q Consensus 351 ~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~-----~~~~~~~~r~aal~~l~~l~~ 421 (626)
....|..|.++..+++.++....+ .+++.+++.+..+..+ +. ..+|..+++++|++++
T Consensus 463 ----------~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k---~~v~~t~~~~lGry~~ 529 (1023)
T 4hat_C 463 ----------SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNK---AVVASDIMYVVGQYPR 529 (1023)
T ss_dssp ----------TTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHH---HHHHHHHHHHHHTCHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcch---HHHHHHHHHHHHHHHH
Confidence 113489999999999999887753 4577888888877764 33 5567778899998887
Q ss_pred cCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhc---CCCchhhhHHHHHHHHHHHhccCCHHHHHH
Q 006912 422 GCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI---GHQNGREQFEKVLMGLLKRILDTNKRVQEA 498 (626)
Q Consensus 422 ~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~ 498 (626)
.+... ..+++.+++.++..+.++++.|+.+||+++..+++.+.... ++....+|+..++..+.....+-.+.-+..
T Consensus 530 wl~~~-~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~ 608 (1023)
T 4hat_C 530 FLKAH-WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1023)
T ss_dssp HHHHC-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HHhcc-HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 65322 36788899999999999999999999999999999887532 112235689999998888887767777889
Q ss_pred HHHHHHHHHHHhccc--ccchHHHHHHHHHHHHhhhh---------------HHHHHHHHHHHHHHHHHhccccCChhhh
Q 006912 499 ACSAFATLEEEAAEE--LAPRLEIILQHLMMAFGKYQ---------------RRNLRIVYDAIGTLADAVGFELNQPVYL 561 (626)
Q Consensus 499 a~~al~~l~~~~~~~--~~~~l~~i~~~l~~~l~~~~---------------~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 561 (626)
+..+++.+++..+.. ...++..+++.+...++.-. .+.+...+++++.++.++|..|. +++
T Consensus 609 lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~--~~~ 686 (1023)
T 4hat_C 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFY--PQL 686 (1023)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGH--HHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHH--HHH
Confidence 999999999987632 33456555555544443311 12334789999999999999887 689
Q ss_pred hhhhHHHHHHHhc
Q 006912 562 DILMPPLIAKWQQ 574 (626)
Q Consensus 562 ~~l~~~l~~~~~~ 574 (626)
..+++.+++.++.
T Consensus 687 ~~i~~~~l~~y~~ 699 (1023)
T 4hat_C 687 GHIYYNMLQLYRA 699 (1023)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877654
No 55
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.47 E-value=1.4e-11 Score=115.78 Aligned_cols=244 Identities=17% Similarity=0.116 Sum_probs=176.4
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhh
Q 006912 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (626)
Q Consensus 181 il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 259 (626)
.+|.+++.+.++++.+|..|+.++..+....++....... ..++.+.+++.+++++++..++.+|..+....++.-...
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 4678999999999999999999999998775533222222 568899999999999999999999999987655433222
Q ss_pred HH-HHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCC
Q 006912 260 LR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (626)
Q Consensus 260 l~-~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~ 338 (626)
.. ..++.++..+.+.+.+++..++..+..++... ..
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~--~~----------------------------------------- 119 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--DE----------------------------------------- 119 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC--HH-----------------------------------------
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HH-----------------------------------------
Confidence 22 45667777777888889999998888887531 00
Q ss_pred CCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHH
Q 006912 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGA 418 (626)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~ 418 (626)
.+.. +.. ...++.+.+.+.+++ +.+|..++.+++.
T Consensus 120 ----------------------------~~~~-------~~~-------~~~i~~L~~~l~~~~---~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 120 ----------------------------AIKA-------IVD-------AGGVEVLVKLLTSTD---SEVQKEAARALAN 154 (252)
T ss_dssp ----------------------------HHHH-------HHH-------TTHHHHHHHHTTCSC---HHHHHHHHHHHHH
T ss_pred ----------------------------HHHH-------HHH-------CCCHHHHHHHHcCCC---HHHHHHHHHHHHH
Confidence 0000 000 134566777787888 9999999999999
Q ss_pred HHccCccchhhhH-HHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHH
Q 006912 419 IAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQE 497 (626)
Q Consensus 419 l~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~ 497 (626)
++........... ..+++.++..+.++++.+|..|+++++.++...+.. ...-.-..+++.+...++++++.+|.
T Consensus 155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~l~~~~~i~~L~~ll~~~~~~v~~ 230 (252)
T 4hxt_A 155 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA----IKAIVDAGGVEVLQKLLTSTDSEVQK 230 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH----HHHHHHTTHHHHHHHGGGCSCHHHHH
T ss_pred HHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH----HHHHHHCCCHHHHHHHHCCCcHHHHH
Confidence 9886543221111 347889999999999999999999999998632211 00111245788899999999999999
Q ss_pred HHHHHHHHHHHHhcccccc
Q 006912 498 AACSAFATLEEEAAEELAP 516 (626)
Q Consensus 498 ~a~~al~~l~~~~~~~~~~ 516 (626)
.|+++|.++....+....+
T Consensus 231 ~a~~~L~~l~~~~~~~~~~ 249 (252)
T 4hxt_A 231 EAQRALENIKSGGWLEHHH 249 (252)
T ss_dssp HHHHHHHHHHHTCBCCC--
T ss_pred HHHHHHHHHHcCCCccccc
Confidence 9999999999876554443
No 56
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.42 E-value=2.4e-10 Score=117.65 Aligned_cols=362 Identities=13% Similarity=0.105 Sum_probs=228.4
Q ss_pred cCch-HHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHH
Q 006912 126 IAGW-LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (626)
Q Consensus 126 ~~~~-~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l 204 (626)
...| ..-+|.+.+.+.++++.++..|..+|..++....+.-. . -.-...+|.|++.|.+++..++..|+.+|
T Consensus 42 ~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~-~------V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL 114 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKT-D------VRKLKGIPVLVGLLDHPKKEVHLGACGAL 114 (584)
T ss_dssp CCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH-H------HHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHH-H------HHHcCCcHHHHHHHCCCCHHHHHHHHHHH
Confidence 3445 33488899999999999999999999988864433210 0 01245789999999999999999999999
Q ss_pred HHHHhccchHHHHhHH--HHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhCc---cchhhhHHHHHHHHHh---h-----
Q 006912 205 NQFIMLMPSALFVSMD--QYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRP---SFLEPHLRNLFEYMLQ---V----- 270 (626)
Q Consensus 205 ~~~~~~~~~~~~~~~~--~~l~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~---~~~~~~l~~l~~~~~~---~----- 270 (626)
..+...........+. ..++.|+.++.. .+.+++..+..+|..+..... ......++.++..+.. .
T Consensus 115 ~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~ 194 (584)
T 3l6x_A 115 KNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREP 194 (584)
T ss_dssp HHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC---
T ss_pred HHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccc
Confidence 9998642222222221 457788887764 577889999999998876322 1222333444443321 0
Q ss_pred ------ccCCChHHHHHHHhHHHHhhccCCc-chhHHhhhhhhHHHHhhhcccC----chhhhhhhhhccCCCCCCCCCC
Q 006912 271 ------NKDTDDDVALEACEFWHSYFEAQLP-HENLKEFLPRLVPVLLSNMIYA----DDDESLVEAEEDESLPDRDQDL 339 (626)
Q Consensus 271 ------~~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~l~~li~~l~~~l~~~----~~d~~~~~~~~~e~~~~~~~~~ 339 (626)
....+.+++..|..+|..++..... ...+.. ...+++.|+..+... ..+.
T Consensus 195 ~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~------------------ 255 (584)
T 3l6x_A 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDS------------------ 255 (584)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTTCCSC------------------
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcccCccH------------------
Confidence 1123578999999999999875211 222221 233444444443311 0000
Q ss_pred CcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhh--------------------------cCc-ch--HHhH
Q 006912 340 KPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV--------------------------FGD-EI--LPTL 390 (626)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~--------------------------~~~-~~--~~~l 390 (626)
.....+..+|..++.. .++ +. -+..
T Consensus 256 --------------------------~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~ 309 (584)
T 3l6x_A 256 --------------------------KLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEV 309 (584)
T ss_dssp --------------------------HHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHH
T ss_pred --------------------------HHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccH
Confidence 0111122222222211 111 11 1345
Q ss_pred HHHHHHhhcC-CCCCChhHHHHHHHHHHHHHccCcc---chhhhH--HHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHH
Q 006912 391 MPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIK---GLYPHL--SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (626)
Q Consensus 391 ~~~l~~~l~~-~~~~~~~~r~aal~~l~~l~~~~~~---~~~~~l--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (626)
++.+...+.. .+ +.++++|+.+|..++.+-.. .+...+ ...+|.|+..+.++++.|+..|+++|+.++..-
T Consensus 310 v~~Ll~LL~~s~~---~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 310 VRIYISLLKESKT---PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp HHHHHHHHHHCCC---HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCCC---HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence 6677777754 45 89999999999999876421 122222 356899999999999999999999999999743
Q ss_pred hhhcCCCchhhhHHHHHHHHHHHhccC--------CHHHHHHHHHHHHHHHHHhcccccch-HHHHHHHHHHHHhhh--h
Q 006912 465 VQDIGHQNGREQFEKVLMGLLKRILDT--------NKRVQEAACSAFATLEEEAAEELAPR-LEIILQHLMMAFGKY--Q 533 (626)
Q Consensus 465 ~~~~~~~~~~~~~~~ll~~l~~~l~d~--------~~~v~~~a~~al~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~--~ 533 (626)
. .....-...++.|+..|.+. +..++..||.+|.+++....+.-... -...++.|..++... .
T Consensus 387 ~------~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~ 460 (584)
T 3l6x_A 387 R------NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRS 460 (584)
T ss_dssp S------CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSC
T ss_pred h------HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCC
Confidence 2 22334467889999988765 35788899999999974322211111 125667777777764 5
Q ss_pred HHHHHHHHHHHHHHH
Q 006912 534 RRNLRIVYDAIGTLA 548 (626)
Q Consensus 534 ~~~~~~~~~~l~~i~ 548 (626)
.+..+.+..+|.++.
T Consensus 461 ~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 461 EKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 677778888888875
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.41 E-value=3.5e-11 Score=115.07 Aligned_cols=105 Identities=22% Similarity=0.255 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCc
Q 006912 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF 446 (626)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~ 446 (626)
+|..+..++..+.. +..++.+...+.+++ +.+|..++.+++.+.... +.+++.+...+.|++
T Consensus 144 vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~---~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~ 205 (280)
T 1oyz_A 144 VRRATAFAISVIND-------KATIPLLINLLKDPN---GDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKN 205 (280)
T ss_dssp HHHHHHHHHHTC----------CCHHHHHHHHTCSS---HHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhcCC-------HHHHHHHHHHHcCCC---HHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCC
Confidence 55555555553321 123455555666666 777777777777663211 234566666677777
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 006912 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (626)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l 506 (626)
+.||..|+++|+.+.. . ..++.+...+.|++ ||..|..+|+.+
T Consensus 206 ~~vR~~A~~aL~~~~~-----------~----~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 206 EEVRIEAIIGLSYRKD-----------K----RVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp HHHHHHHHHHHHHTTC-----------G----GGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-----------H----hhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 7777777777776641 1 13445555555533 666777776664
No 58
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.41 E-value=7.9e-11 Score=120.56 Aligned_cols=375 Identities=13% Similarity=0.101 Sum_probs=221.3
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccc
Q 006912 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (626)
Q Consensus 133 l~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (626)
+|.+.+.+.++++.++..++.+|..++...+.. ... -.-...+|.+++.+.++++.++..|+.+|..+....+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~-~~~------i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~ 76 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESA-KQQ------VYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST 76 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSH-HHH------HHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHH-HHH------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 678888899999999999999999988543221 000 1125679999999999999999999999999987533
Q ss_pred hHHHHhH--HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhCccchhh-hHHHHHHHHHhhc--------cC-------
Q 006912 213 SALFVSM--DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEP-HLRNLFEYMLQVN--------KD------- 273 (626)
Q Consensus 213 ~~~~~~~--~~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~-~l~~l~~~~~~~~--------~~------- 273 (626)
+ ....+ ...++.|.+++. +++++++..++.+|..++.. ++ .+. .+...++.++..+ .+
T Consensus 77 ~-~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~-~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 77 T-NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp H-HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS-THHHHHHHHHHHHHHHTTHHHHTCC---------
T ss_pred H-HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HH-hHHHHHhccHHHHHHHHhccccccccCccchhcc
Confidence 2 22222 145788888888 77899999999999999876 22 221 1224455555554 11
Q ss_pred -CChHHHHHHHhHHHHhhccCCcchhHHhhh--hhhHHHHhhhcccC------chh-hh-------hhhhhccCCCCCCC
Q 006912 274 -TDDDVALEACEFWHSYFEAQLPHENLKEFL--PRLVPVLLSNMIYA------DDD-ES-------LVEAEEDESLPDRD 336 (626)
Q Consensus 274 -~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l--~~li~~l~~~l~~~------~~d-~~-------~~~~~~~e~~~~~~ 336 (626)
.+.++...|...+..++..+ +...... +..++.++..+... ++. .+ ......+...+.+.
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~~---~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~ 230 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSAD---AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY 230 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTSH---HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHH
T ss_pred cccHHHHHHHHHHHHHHccCH---HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchh
Confidence 24567779999999998752 2112222 14556555544321 000 00 00000000000000
Q ss_pred CCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhh-------c----------Ccch--HHhHHHHHHHh
Q 006912 337 QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV-------F----------GDEI--LPTLMPVIQAK 397 (626)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~-------~----------~~~~--~~~l~~~l~~~ 397 (626)
..+.+... .... ......|+...... . +.+. -...++.+...
T Consensus 231 ~~~~~~~~-------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~l 291 (457)
T 1xm9_A 231 RQLEYNAR-------NAYT------------EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNL 291 (457)
T ss_dssp HHHHHTC-----------------------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHH
T ss_pred hhcccccc-------cccc------------cccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHH
Confidence 00000000 0000 00001111111000 0 0011 13455666666
Q ss_pred hcCC-CCCChhHHHHHHHHHHHHHccCcc---ch-hhhH--HHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCC
Q 006912 398 LSAS-GDEAWKDREAAVLALGAIAEGCIK---GL-YPHL--SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (626)
Q Consensus 398 l~~~-~~~~~~~r~aal~~l~~l~~~~~~---~~-~~~l--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (626)
+.++ + ...+++|+.+|+.++.+... .+ ...+ ...+|.++..+.+++..|+..|+|+|+.++..-.
T Consensus 292 L~~~~~---~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~----- 363 (457)
T 1xm9_A 292 MGKSKK---DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL----- 363 (457)
T ss_dssp HHHCCC---HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG-----
T ss_pred HhhcCC---HHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH-----
Confidence 6654 4 89999999999999876532 11 1122 2467899999999999999999999999987432
Q ss_pred CchhhhHHHHHHHHHHHhccCC------HHHHHHHHHHHHHHHHHhcccccch-HHHHHHHHHHHHhhh-hHHHHHHHHH
Q 006912 471 QNGREQFEKVLMGLLKRILDTN------KRVQEAACSAFATLEEEAAEELAPR-LEIILQHLMMAFGKY-QRRNLRIVYD 542 (626)
Q Consensus 471 ~~~~~~~~~ll~~l~~~l~d~~------~~v~~~a~~al~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~-~~~~~~~~~~ 542 (626)
.....-...++.++..+...+ ..+...++.+|.+++....+..... -...++.|..++... +.+..+.+..
T Consensus 364 -~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~ 442 (457)
T 1xm9_A 364 -LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442 (457)
T ss_dssp -GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHH
Confidence 123334568888999888653 3578889999999885432211111 125667777777776 6777777777
Q ss_pred HHHHHH
Q 006912 543 AIGTLA 548 (626)
Q Consensus 543 ~l~~i~ 548 (626)
.|.++.
T Consensus 443 ~L~~~~ 448 (457)
T 1xm9_A 443 LLSDMW 448 (457)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 776554
No 59
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.39 E-value=1.3e-10 Score=109.26 Aligned_cols=239 Identities=17% Similarity=0.112 Sum_probs=175.0
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhcc
Q 006912 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (626)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (626)
-++.+.+.+.++++.+|..++.+|..++...++.... -.-...++.+.+.+.+++..+|..++.+|..+....
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~-------~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 75 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKA-------IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 75 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHH-------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH-------HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 3678889999989999999999999998776532110 112468999999999999999999999999998654
Q ss_pred chHHHHhHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhccCCChHHHHHHHhHHHHh
Q 006912 212 PSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSY 289 (626)
Q Consensus 212 ~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l~~l 289 (626)
+........ ..++.+..++.+++++++..++.+|..+....++....... ..++.++..+.+.++.++..++.++..+
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 155 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 332221111 46888999999999999999999999999755543322222 4667777778888888899998888888
Q ss_pred hccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHH
Q 006912 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (626)
Q Consensus 290 ~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 369 (626)
+... ... +.
T Consensus 156 ~~~~--~~~---------------------------------------------------------------------~~ 164 (252)
T 4hxt_A 156 ASGP--DEA---------------------------------------------------------------------IK 164 (252)
T ss_dssp TTSC--HHH---------------------------------------------------------------------HH
T ss_pred HcCC--HHH---------------------------------------------------------------------HH
Confidence 7631 000 00
Q ss_pred HHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH-HHHHHHHhhhcCCCchH
Q 006912 370 CSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPL 448 (626)
Q Consensus 370 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~ 448 (626)
.+. -...++.+...+.+++ +.+|..++.+++.++.+......... ..+++.++..+.++++.
T Consensus 165 -------~~~-------~~~~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 227 (252)
T 4hxt_A 165 -------AIV-------DAGGVEVLVKLLTSTD---SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSE 227 (252)
T ss_dssp -------HHH-------HTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHH
T ss_pred -------HHH-------HCcCHHHHHHHHCCCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHH
Confidence 000 0135566777788887 99999999999999875433222221 23688999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006912 449 IRSISCWTLSRFSKFIV 465 (626)
Q Consensus 449 vr~~a~~~l~~l~~~~~ 465 (626)
+|..|+++|++++....
T Consensus 228 v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 228 VQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999997654
No 60
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.39 E-value=1.7e-08 Score=111.84 Aligned_cols=206 Identities=11% Similarity=0.116 Sum_probs=141.2
Q ss_pred ccccHHHHHHHHHHHHHhhcCc----chHHhHHHHHHHhhcCCCCCChhH--HHHHHHHHHHHHccCccchhhhHHHHHH
Q 006912 363 NVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAWKD--REAAVLALGAIAEGCIKGLYPHLSEIVA 436 (626)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~--r~aal~~l~~l~~~~~~~~~~~l~~l~~ 436 (626)
.+|..+.++..+++.++....+ .+++.+++.+..+...+.+++.+. +...++.+|+..+-.... .++++.++.
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L~~vl~ 569 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFLKTVVN 569 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHHHHHHH
Confidence 3588999999999999876653 568888888887776653211333 333446777776654322 467888999
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcC---CCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhccc
Q 006912 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG---HQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE 513 (626)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~ 513 (626)
.++..+.++++.|+.+|+.++..+++.+..... +....+++.+++..+.....+-.+.-...-..+++.++...+..
T Consensus 570 ~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 570 KLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999876421 12345688999888888777666777778889999999887653
Q ss_pred c--cchHHHHHHHHHHHHhhh------------hH---HHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHH
Q 006912 514 L--APRLEIILQHLMMAFGKY------------QR---RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (626)
Q Consensus 514 ~--~~~l~~i~~~l~~~l~~~------------~~---~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~ 571 (626)
. ..++..+++......+.- +. +....++++...++.++|..|. +++..+.+.+++.
T Consensus 650 ~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~--~~~~~i~~~~l~~ 722 (1073)
T 3gjx_A 650 TVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFV--IQLGRIYLDMLNV 722 (1073)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHH--HHHHHHHHHHHHH
Confidence 2 345555554444333221 11 2233677777777777777665 4555555544443
No 61
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.37 E-value=6.6e-11 Score=111.23 Aligned_cols=238 Identities=16% Similarity=0.138 Sum_probs=172.2
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 006912 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (626)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (626)
+..++.+...+.++++.++..++.+|..++....+... . -.-...+|.+++.++++++.+|..|+.+|..+..
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~-~------~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQ-A------VIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHH-H------HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHH-H------HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 33477888888899999999999999776655222111 0 1125688999999999999999999999999987
Q ss_pred ccchHHHHhHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhccCCChHHHHHHHhHHH
Q 006912 210 LMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWH 287 (626)
Q Consensus 210 ~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l~ 287 (626)
..++....... ..++.+..++.++++.++..++.+|..+............. ..++.++..+.+.+..++..++..+.
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 54433222221 46889999999999999999999999998765543222222 46777777888888888998988888
Q ss_pred HhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccH
Q 006912 288 SYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (626)
Q Consensus 288 ~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (626)
.++... ....
T Consensus 164 ~l~~~~--~~~~-------------------------------------------------------------------- 173 (252)
T 4db8_A 164 NIASGG--NEQI-------------------------------------------------------------------- 173 (252)
T ss_dssp HHTTSC--HHHH--------------------------------------------------------------------
T ss_pred HHHcCC--hHHH--------------------------------------------------------------------
Confidence 887641 0000
Q ss_pred HHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHH-HHHHHHhhhcCCCc
Q 006912 368 RKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKF 446 (626)
Q Consensus 368 r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~l~~~l~~~l~d~~ 446 (626)
. .+. -..+++.+.+.+.+++ +.+|..++.+|+.++.+..+....... .+++.++..+.+.+
T Consensus 174 -~-------~~~-------~~~~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 235 (252)
T 4db8_A 174 -Q-------AVI-------DAGALPALVQLLSSPN---EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 235 (252)
T ss_dssp -H-------HHH-------HTTCHHHHHHGGGCSS---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSS
T ss_pred -H-------HHH-------HCCCHHHHHHHHCCCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCC
Confidence 0 000 0134566777788887 999999999999998755433322222 37889999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 006912 447 PLIRSISCWTLSRFSK 462 (626)
Q Consensus 447 ~~vr~~a~~~l~~l~~ 462 (626)
+.+|..|+++|++++.
T Consensus 236 ~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 236 EKIQKEAQEALEKLQS 251 (252)
T ss_dssp SHHHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998864
No 62
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.36 E-value=2.8e-11 Score=113.81 Aligned_cols=235 Identities=15% Similarity=0.095 Sum_probs=175.1
Q ss_pred CChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc
Q 006912 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126 (626)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~ 126 (626)
+..+..+...|. +.++++|..|+..|++.+...-.....-......+.|+..|.++++.+|..++.+++.++.....
T Consensus 11 ~~~~~~~~~~L~---s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 11 GSELPQMTQQLN---SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp TCSHHHHHHHHH---SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cchHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 445677888786 66788999999999887765211111112234557788888888899999999999999864211
Q ss_pred C--c--hHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHH
Q 006912 127 A--G--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLG 202 (626)
Q Consensus 127 ~--~--~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~ 202 (626)
. . -.+.++.+.+.+.++++.+|..++.+|+.++........ .-.-...+|.+.+.+.++++.+|..|+.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~-------~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 160 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ-------AVIDAGALPALVQLLSSPNEQILQEALW 160 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH-------HHHHTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH-------HHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 1 1 134689999999999999999999999999876543211 0112468899999999999999999999
Q ss_pred HHHHHHhccchHHHHhH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhccCCChHHHH
Q 006912 203 SVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVAL 280 (626)
Q Consensus 203 ~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v~~ 280 (626)
+|..+....+....... ...++.+..++.++++.++..++.+|..++...+......+. ..++.+...+.+.+++++.
T Consensus 161 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~ 240 (252)
T 4db8_A 161 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQK 240 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHH
T ss_pred HHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHH
Confidence 99999876543322211 256888999999999999999999999998766554433333 4777888888888999999
Q ss_pred HHHhHHHHhhc
Q 006912 281 EACEFWHSYFE 291 (626)
Q Consensus 281 ~a~~~l~~l~~ 291 (626)
.|+.++..+++
T Consensus 241 ~A~~~L~~l~~ 251 (252)
T 4db8_A 241 EAQEALEKLQS 251 (252)
T ss_dssp THHHHHHTTC-
T ss_pred HHHHHHHHHhc
Confidence 99999988864
No 63
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.33 E-value=1.9e-09 Score=111.13 Aligned_cols=351 Identities=15% Similarity=0.048 Sum_probs=224.6
Q ss_pred HhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCc--h--HHHHHHHHHHhccCChhHHhHHHHHHHHHhhhc-hhccccCC
Q 006912 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG--W--LELLQALVTCLDSNDINHMEGAMDALSKICEDI-PQVLDSDV 170 (626)
Q Consensus 96 ~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~--~--~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~-~~~~~~~~ 170 (626)
..|+..|.++++.++..++.++..++....... . .+.+|.|.+++.++++.+++.|+.+|..++... .+. ...
T Consensus 51 ~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n-k~~- 128 (584)
T 3l6x_A 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN-KIA- 128 (584)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH-HHH-
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH-HHH-
Confidence 466778888889999999999999986432211 1 235899999999999999999999999998631 221 100
Q ss_pred CCCccchhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhc------------------C
Q 006912 171 PGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS------------------N 231 (626)
Q Consensus 171 ~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~------------------~ 231 (626)
-.-...+|.|+..|.+ ++..++..+..+|..+... ++.-...+...++.|.+++ .
T Consensus 129 -----I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 129 -----IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp -----HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred -----HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence 0125678999999986 6788999999999988763 2211111122344444432 1
Q ss_pred CCCHHHHHHHHHHHHHHHhhCcc---chh---hhHHHHHHHHHhhc--cCCChHHHHHHHhHHHHhhccC-----Ccchh
Q 006912 232 DPSAEVRKLVCAAFNLLIEVRPS---FLE---PHLRNLFEYMLQVN--KDTDDDVALEACEFWHSYFEAQ-----LPHEN 298 (626)
Q Consensus 232 ~~~~~~~~~~~~~l~~l~~~~~~---~~~---~~l~~l~~~~~~~~--~~~~~~v~~~a~~~l~~l~~~~-----~~~~~ 298 (626)
.++++++..+..+|..+....++ .+. ..++.++.++-..+ .+.+......|+..|..++..- .....
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~ 282 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY 282 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence 23578999999999999865432 111 22334444443332 2345567788888887776430 00000
Q ss_pred HH-----------------hhh--hhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCc
Q 006912 299 LK-----------------EFL--PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (626)
Q Consensus 299 ~~-----------------~~l--~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (626)
.. +.+ ...++.++..+..
T Consensus 283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~------------------------------------------- 319 (584)
T 3l6x_A 283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE------------------------------------------- 319 (584)
T ss_dssp -------------CCCCGGGGGGSHHHHHHHHHHHHH-------------------------------------------
T ss_pred hhhcccccccccccCchhHHHHhcccHHHHHHHHHcc-------------------------------------------
Confidence 00 000 0111122211110
Q ss_pred cccccccHHHHHHHHHHHHHhhcCc---c---hH--HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhH
Q 006912 360 DIVNVWNLRKCSAAALDVLSNVFGD---E---IL--PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL 431 (626)
Q Consensus 360 ~~~~~~~~r~~a~~~l~~l~~~~~~---~---~~--~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l 431 (626)
.....++..|+.+|..++..-+. . .+ ...+|.+.+++.+++ ..++..++.+|+.++.+.... ...-
T Consensus 320 --s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~---~~v~~~A~~aL~nLs~~~~~~-~~I~ 393 (584)
T 3l6x_A 320 --SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH---ERVVKAASGALRNLAVDARNK-ELIG 393 (584)
T ss_dssp --CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC---HHHHHHHHHHHHHHHTTCSCH-HHHH
T ss_pred --CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHHHHHHhCChhHH-HHHH
Confidence 00124678899999988754321 1 12 356889999999998 999999999999999865311 1223
Q ss_pred HHHHHHHhhhcCCC--------chHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccC--CHHHHHHHHH
Q 006912 432 SEIVAFLIPLLDDK--------FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACS 501 (626)
Q Consensus 432 ~~l~~~l~~~l~d~--------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~--~~~v~~~a~~ 501 (626)
...+|.++..|.+. +..++..|+++|++++..-... ...-.-...++.|+..+.+. ++.++..|+.
T Consensus 394 ~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~----~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~ 469 (584)
T 3l6x_A 394 KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA----AKKLRETQGIEKLVLINKSGNRSEKEVRAAAL 469 (584)
T ss_dssp HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH----HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHH
T ss_pred hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH----HHHHHHCCChHHHHHHHhCCCCChHHHHHHHH
Confidence 45789999999865 4678899999999987432211 01111235688888888875 7899999999
Q ss_pred HHHHHH
Q 006912 502 AFATLE 507 (626)
Q Consensus 502 al~~l~ 507 (626)
+|.++.
T Consensus 470 vL~nl~ 475 (584)
T 3l6x_A 470 VLQTIW 475 (584)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999997
No 64
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.33 E-value=8.1e-11 Score=112.48 Aligned_cols=103 Identities=12% Similarity=0.111 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCc
Q 006912 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF 446 (626)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~ 446 (626)
+|..+..++..+... -+..++.+...+++++ +.+|..++.+|+.+... ..++.++..+.|++
T Consensus 175 vr~~a~~aL~~~~~~-----~~~~~~~L~~~l~d~~---~~vR~~A~~aL~~~~~~----------~~~~~L~~~l~d~~ 236 (280)
T 1oyz_A 175 VRNWAAFAININKYD-----NSDIRDCFVEMLQDKN---EEVRIEAIIGLSYRKDK----------RVLSVLCDELKKNT 236 (280)
T ss_dssp HHHHHHHHHHHHTCC-----CHHHHHHHHHHTTCSC---HHHHHHHHHHHHHTTCG----------GGHHHHHHHHTSSS
T ss_pred HHHHHHHHHHhhccC-----cHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhCCH----------hhHHHHHHHhcCcc
Confidence 555555555544110 1234455666666666 77777777777766521 13455555555544
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhcc-CCHHHHHHHHHHHH
Q 006912 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD-TNKRVQEAACSAFA 504 (626)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d-~~~~v~~~a~~al~ 504 (626)
||..|+++++.+.. . .+++.+.+.+.+ +++.++..+..++.
T Consensus 237 --vr~~a~~aL~~i~~-----------~----~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 237 --VYDDIIEAAGELGD-----------K----TLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp --CCHHHHHHHHHHCC-----------G----GGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred --HHHHHHHHHHhcCc-----------h----hhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 67777777766542 1 234555555543 34555555555543
No 65
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.31 E-value=5.2e-10 Score=114.48 Aligned_cols=377 Identities=14% Similarity=0.040 Sum_probs=221.7
Q ss_pred HhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCch-----HHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCC
Q 006912 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW-----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (626)
Q Consensus 96 ~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~-----~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~ 170 (626)
+.++..|.++++.++..++.++..++... ++.+ .+.+|.|.+++.++++.++..+..+|..++...++.-. .
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~-~- 81 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL-E- 81 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH-H-
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH-H-
Confidence 45777888888999999999999998543 2223 34589999999999999999999999999875332210 0
Q ss_pred CCCccchhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhc--------CC--------C
Q 006912 171 PGLAECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS--------ND--------P 233 (626)
Q Consensus 171 ~~~~~~~~~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~--------~~--------~ 233 (626)
-.-.+.+|.+++.|. +++++++..++.+|..+... ++.-...+...++.|..++ .+ .
T Consensus 82 -----i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 82 -----TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp -----HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred -----HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 012567899999999 78899999999999999876 3211111226677777777 22 2
Q ss_pred CHHHHHHHHHHHHHHHhhCccchh------hhHHHHHHHHHhhc--cCCChHHHHHHHhHHHHhhcc-----CCcchhHH
Q 006912 234 SAEVRKLVCAAFNLLIEVRPSFLE------PHLRNLFEYMLQVN--KDTDDDVALEACEFWHSYFEA-----QLPHENLK 300 (626)
Q Consensus 234 ~~~~~~~~~~~l~~l~~~~~~~~~------~~l~~l~~~~~~~~--~~~~~~v~~~a~~~l~~l~~~-----~~~~~~~~ 300 (626)
++++...++.+|..++.. ++... ..++.++..+.... .+.+..+...++..+..++.. +.......
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 456677999999998865 33211 23344444433321 113444566676666666422 00000000
Q ss_pred hhhhhhH-----HHHhhhcccCchhhhhhhhh-ccC-CCCCCCCC------CCcccccccCCCCCCCCCCCccccccccH
Q 006912 301 EFLPRLV-----PVLLSNMIYADDDESLVEAE-EDE-SLPDRDQD------LKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (626)
Q Consensus 301 ~~l~~li-----~~l~~~l~~~~~d~~~~~~~-~~e-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (626)
+...... ..++........ ...++.. .++ ..+.+.+. +++...... ....-.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~-------------~~~~~~~ 300 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMM-NNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG-------------KSKKDAT 300 (457)
T ss_dssp HTC-----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHH-------------HCCCHHH
T ss_pred cccccccccccccchhhccchhhh-hccccCCccccccCchHHHHHhCcchHHHHHHHHh-------------hcCCHHH
Confidence 0000000 000000000000 0000000 000 00000000 000000000 0000136
Q ss_pred HHHHHHHHHHHHhhcCc---c----hH--HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhh-hHHHHHHH
Q 006912 368 RKCSAAALDVLSNVFGD---E----IL--PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYP-HLSEIVAF 437 (626)
Q Consensus 368 r~~a~~~l~~l~~~~~~---~----~~--~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~-~l~~l~~~ 437 (626)
+..|..+|..++..-+. . .+ ...+|.+.+++.+++ ..++..|+.+++.++... .... .-...+|.
T Consensus 301 ~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~---~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~ 375 (457)
T 1xm9_A 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN---SDVVRSGASLLSNMSRHP--LLHRVMGNQVFPE 375 (457)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC---HHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHH
T ss_pred HHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC---HhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHH
Confidence 77788888888754332 1 12 256788999999998 999999999999998753 2221 22357888
Q ss_pred HhhhcCCCc------hHHHHHHHHHHHHHHHHHhhhcCCCchhhhH--HHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Q 006912 438 LIPLLDDKF------PLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDT-NKRVQEAACSAFATLE 507 (626)
Q Consensus 438 l~~~l~d~~------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~ll~~l~~~l~d~-~~~v~~~a~~al~~l~ 507 (626)
++..+.+.+ +.+...++++++.+...-.+ ....+ ...++.+...+.+. +..++..|++.|.+++
T Consensus 376 Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 888887653 46888999999988753221 11222 36788888888888 8999999999998876
No 66
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.23 E-value=5.2e-10 Score=101.79 Aligned_cols=91 Identities=15% Similarity=0.093 Sum_probs=50.7
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhh
Q 006912 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (626)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 258 (626)
...++.+.+.+.++++.+|..++.+|..+.. +..++.+...+.++++.+|..++.+|..+...
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~------- 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE------- 80 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------
Confidence 4456667777777777777777777766532 12244555566666667777666666654321
Q ss_pred hHHHHHHHHHhhccCCChHHHHHHHhHHHHh
Q 006912 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (626)
Q Consensus 259 ~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l 289 (626)
..++.+...+.+.++.+|..++..+..+
T Consensus 81 ---~~~~~L~~~l~~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 81 ---RAVEPLIKALKDEDGWVRQSAAVALGQI 108 (211)
T ss_dssp ---GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 1222333334455555555555544444
No 67
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.21 E-value=9.1e-10 Score=99.29 Aligned_cols=88 Identities=24% Similarity=0.242 Sum_probs=51.8
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCC
Q 006912 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (626)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (626)
++.+.+.+.+++ +.+|.+++.+++.+... ..++.+...+.|+++.||..|+++++.+..
T Consensus 109 ~~~L~~~l~d~~---~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-------- 167 (201)
T 3ltj_A 109 VEPLIKALKDED---WFVRIAAAFALGEIGDE----------RAVEPLIKALKDEDGWVRQSAADALGEIGG-------- 167 (201)
T ss_dssp HHHHHHHTTCSS---HHHHHHHHHHHHHHTCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHHhCCH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------
Confidence 344455555665 67777777776666431 134555566666677777777776666531
Q ss_pred CchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 006912 471 QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (626)
Q Consensus 471 ~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l 506 (626)
...++.+...++|+++.||..|..+|.++
T Consensus 168 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 168 -------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp -------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred -------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 12344455555666677777777666654
No 68
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.20 E-value=5.1e-07 Score=94.63 Aligned_cols=357 Identities=11% Similarity=0.063 Sum_probs=226.9
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 006912 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (626)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (626)
...++.|.+.+++ ..+|..++.+|.++-...... ...+..+.+.+.+.+.+++.+.+..|++.|..+..
T Consensus 295 ~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~---------~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl 363 (778)
T 3opb_A 295 ENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLT---------CINLKQLSEIFINAISRRIVPKVEMSVEALAYLSL 363 (778)
T ss_dssp HHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCT---------TCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCC---------cCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 4556777777755 467777777777765543321 12356788889999988777679999999987754
Q ss_pred ccc--hHHHHhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhCccc---------hhh-------------------
Q 006912 210 LMP--SALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSF---------LEP------------------- 258 (626)
Q Consensus 210 ~~~--~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~---------~~~------------------- 258 (626)
... +.+... ..+++.|+..+.. .+..+...+..+|..+....+.. +++
T Consensus 364 ~~~VKe~L~~d-~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~ 442 (778)
T 3opb_A 364 KASVKIMIRSN-ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAK 442 (778)
T ss_dssp SSHHHHHHHHC-HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHH
T ss_pred CHHHHHHHHhC-HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccch
Confidence 321 222222 3567888887774 55667778888887776543321 000
Q ss_pred -hHH----------HHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhh
Q 006912 259 -HLR----------NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAE 327 (626)
Q Consensus 259 -~l~----------~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~ 327 (626)
++. ..++.+.....+.++.++..++..+..++........+. -...++.++..+....+
T Consensus 443 ~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lv--qqGal~~LL~lL~s~~~-------- 512 (778)
T 3opb_A 443 EDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLA--QQGAVKIILEYLANKQD-------- 512 (778)
T ss_dssp HHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHH--HTTHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HCCCHHHHHHHHhcCCC--------
Confidence 100 234445556677788899999999999987633222221 12445555554432110
Q ss_pred ccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc------Cc-chHHhHHHHHHHhhcC
Q 006912 328 EDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF------GD-EILPTLMPVIQAKLSA 400 (626)
Q Consensus 328 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~------~~-~~~~~l~~~l~~~l~~ 400 (626)
.. -..|..|+.+|..+.... +. ... ..++.+.+++..
T Consensus 513 -------------------------~~----------~~~k~~AA~ALArLlis~np~~~f~~~~~~-~aI~pLv~LL~~ 556 (778)
T 3opb_A 513 -------------------------IG----------EPIRILGCRALTRMLIFTNPGLIFKKYSAL-NAIPFLFELLPR 556 (778)
T ss_dssp --------------------------C----------CHHHHHHHHHHHHHHHTSCHHHHSSSSCST-THHHHHHHTSCC
T ss_pred -------------------------cc----------hHHHHHHHHHHHHHHhcCCHHHHcCCCccc-cchHHHHHHcCC
Confidence 00 025788999999887533 22 222 566777777762
Q ss_pred -CCCC----------ChhHHHHHHHHHHHHHccCc---cchh-hhHH--HHHHHHhhhcCCCchHHHHHHHHHHHHHHHH
Q 006912 401 -SGDE----------AWKDREAAVLALGAIAEGCI---KGLY-PHLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (626)
Q Consensus 401 -~~~~----------~~~~r~aal~~l~~l~~~~~---~~~~-~~l~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (626)
+... .-..+..|+.+|+.++.... +... ..+. ..+|.+...+.++++.||.+|++++..++..
T Consensus 557 ~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~ 636 (778)
T 3opb_A 557 STPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH 636 (778)
T ss_dssp SSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred CCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 2211 01458899999999998752 2232 2333 3789999999999999999999999999963
Q ss_pred HhhhcCCCchhhhH-------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc---ccccchHHHHHHHHHHHHhh--
Q 006912 464 IVQDIGHQNGREQF-------EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA---EELAPRLEIILQHLMMAFGK-- 531 (626)
Q Consensus 464 ~~~~~~~~~~~~~~-------~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~---~~~~~~l~~i~~~l~~~l~~-- 531 (626)
-... ...++ ..-++.++..++..+..+|.+|+++|+++....+ ..+.. .+..++.++.++..
T Consensus 637 ~e~i-----~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~-~~~gi~~Ll~lL~~~~ 710 (778)
T 3opb_A 637 PLTI-----AAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLT-KKELIENAIQVFADQI 710 (778)
T ss_dssp GGGT-----GGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTT-CHHHHHHHHHHHHHTT
T ss_pred cHHH-----HHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHH-ccccHHHHHHHHhccC
Confidence 3210 01111 1236778888888899999999999999975332 11111 13566777777777
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 006912 532 YQRRNLRIVYDAIGTLADA 550 (626)
Q Consensus 532 ~~~~~~~~~~~~l~~i~~~ 550 (626)
.+...+..++-++.++++.
T Consensus 711 ~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 711 DDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp TCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 5667777888899999863
No 69
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.19 E-value=9.8e-10 Score=99.96 Aligned_cols=122 Identities=17% Similarity=0.134 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 006912 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (626)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (626)
++.++.+.+.+.++++.+|..++..|+.+.. ...++.+.+.+.++++.+|..++.+|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 5678888899999999999999999987532 3557788899999999999999999988743
Q ss_pred ccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHh
Q 006912 210 LMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (626)
Q Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l 289 (626)
. ..++.+...+.++++.+|..++.+|..+... ..++.+...+.+.++.+|..++..+..+
T Consensus 80 ~----------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 80 E----------RAVEPLIKALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp G----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 1 2356677778899999999999999877431 1233444455666677777776666555
No 70
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.19 E-value=3.4e-09 Score=114.71 Aligned_cols=276 Identities=15% Similarity=0.223 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHHHhhCc-cchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhh
Q 006912 235 AEVRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (626)
Q Consensus 235 ~~~~~~~~~~l~~l~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~ 313 (626)
..-++.+...+..++.... ....+ ..++..+.+...+.... ..|+..+..+++.........|++-.++|.++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 103 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEHDVP--EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTN 103 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 3344666667777665432 22222 25666677676665443 7788888999977444445578888888888765
Q ss_pred cccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHH
Q 006912 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPV 393 (626)
Q Consensus 314 l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~ 393 (626)
..+.. -.+|.+|..+...+...++...+..++|.
T Consensus 104 ~~dk~----------------------------------------------~~v~~aa~~~~~~~~~~~~~~a~~~~~~~ 137 (986)
T 2iw3_A 104 AGNKD----------------------------------------------KEIQSVASETLISIVNAVNPVAIKALLPH 137 (986)
T ss_dssp TTCSS----------------------------------------------HHHHHHHHHHHHHHHHHSCGGGHHHHHHH
T ss_pred hcCCc----------------------------------------------hHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 54322 14899999999999999998777899999
Q ss_pred HHHhhcCC-CCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCc
Q 006912 394 IQAKLSAS-GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN 472 (626)
Q Consensus 394 l~~~l~~~-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 472 (626)
+...+.+. . |+.+.+|+.+++.+++..++.+...+++++|.+...+.|..+.|..+|..++..+|..+.+. +
T Consensus 138 ~~~~~~~~~k---w~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~----d 210 (986)
T 2iw3_A 138 LTNAIVETNK---WQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK----D 210 (986)
T ss_dssp HHHHHHHCCC---HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT----T
T ss_pred HHHHhccccc---hHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc----c
Confidence 99888764 6 99999999999999998888888999999999999999999999999999999999876532 3
Q ss_pred hhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh--cccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006912 473 GREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (626)
Q Consensus 473 ~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~--~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~ 550 (626)
+.+.+|.+++++.+++. | ..+. ..+.... .+-=.|-+.-++|.|.+-+........+.+.-.+.+++.-
T Consensus 211 ----~~~~~~~~~~~~~~p~~-~-~~~~---~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~l 281 (986)
T 2iw3_A 211 ----IERFIPSLIQCIADPTE-V-PETV---HLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKL 281 (986)
T ss_dssp ----TGGGHHHHHHHHHCTTH-H-HHHH---HHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTT
T ss_pred ----hhhhHHHHHHHhcChhh-h-HHHH---HHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhh
Confidence 45566888888887643 2 2333 3333222 2233578888999999988877776777777888888877
Q ss_pred hccccCChhhhhhhhHHHHHHHhcCC
Q 006912 551 VGFELNQPVYLDILMPPLIAKWQQLP 576 (626)
Q Consensus 551 ~~~~~~~~~~~~~l~~~l~~~~~~~~ 576 (626)
+.....-.+|++.++|.+.+..+..+
T Consensus 282 v~~~~~~~~f~~~l~p~~~~~~~~~~ 307 (986)
T 2iw3_A 282 VEDPQVIAPFLGKLLPGLKSNFATIA 307 (986)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHTTTCC
T ss_pred cCCHHHHhhhhhhhhhHHHHHhhccC
Confidence 65432223699999998877666554
No 71
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.17 E-value=8.1e-09 Score=103.89 Aligned_cols=311 Identities=14% Similarity=0.051 Sum_probs=189.6
Q ss_pred hhHHhHHHHHHHHHhhhchhccccCCC-CCc--cchhhhhHHHHHHhcCCCC--hH-----HHH-------HHHHHHHHH
Q 006912 145 INHMEGAMDALSKICEDIPQVLDSDVP-GLA--ECPINIFLPRLLQFFQSPH--TS-----LRK-------LSLGSVNQF 207 (626)
Q Consensus 145 ~~~r~~~l~~l~~l~~~~~~~~~~~~~-~~~--~~~~~~il~~l~~~l~~~~--~~-----vr~-------~al~~l~~~ 207 (626)
+.++..+..+|..++..-++....... ++. -.......+.+++.+.... .+ ++. .|+++|..+
T Consensus 96 ~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nl 175 (458)
T 3nmz_A 96 KEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL 175 (458)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHh
Confidence 567777777777777665543321000 000 0001122234455554431 11 555 888999888
Q ss_pred HhccchHHHHhHH--HHHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHhhCccchhhh---HHHHHHHHHhhc
Q 006912 208 IMLMPSALFVSMD--QYLQGLFLLSN-----------DPSAEVRKLVCAAFNLLIEVRPSFLEPH---LRNLFEYMLQVN 271 (626)
Q Consensus 208 ~~~~~~~~~~~~~--~~l~~l~~~~~-----------~~~~~~~~~~~~~l~~l~~~~~~~~~~~---l~~l~~~~~~~~ 271 (626)
... + .....+. ..++.|..++. ..++.++..++.+|..++...... +.. ....++.++..+
T Consensus 176 s~~-~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~-k~~i~~~~GaIp~LV~LL 252 (458)
T 3nmz_A 176 SFD-E-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN-KATLCSMKGCMRALVAQL 252 (458)
T ss_dssp TTS-H-HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHCHHHHHHHHHGG
T ss_pred cCC-H-HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCccc-HHHHHHcCCcHHHHHHHH
Confidence 543 2 2333322 34555555542 124668899999999998655421 111 235678888888
Q ss_pred cCCChHHHHHHHhHHHHhhccCCcchhHHhhh--hhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCC
Q 006912 272 KDTDDDVALEACEFWHSYFEAQLPHENLKEFL--PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (626)
Q Consensus 272 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l--~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 349 (626)
.+.+++++..|+..|..++..... ..+..+ ...+|.++..+....+
T Consensus 253 ~s~~~~v~~~A~~aL~nLs~~~~~--~~k~~I~~~GaI~~LV~lLl~s~~------------------------------ 300 (458)
T 3nmz_A 253 KSESEDLQQVIASVLRNLSWRADV--NSKKTLREVGSVKALMECALEVKK------------------------------ 300 (458)
T ss_dssp GCSCHHHHHHHHHHHHHHTSSCCH--HHHHHHHHTTHHHHHHHHHTTCCS------------------------------
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCH--HHHHHHHHcCCHHHHHHHHhcCCC------------------------------
Confidence 888999999999999998763111 111111 2445666554321110
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---chH--HhHHHHHHHhhcCCCCC-ChhHHHHHHHHHHHHHc--
Q 006912 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EIL--PTLMPVIQAKLSASGDE-AWKDREAAVLALGAIAE-- 421 (626)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~--~~l~~~l~~~l~~~~~~-~~~~r~aal~~l~~l~~-- 421 (626)
..++..+..++..++....+ .+. ...+|.+.+.+.+.+.. +..+++.++.+|..++.
T Consensus 301 ---------------~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~ 365 (458)
T 3nmz_A 301 ---------------ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365 (458)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 12566777888888773311 222 35778888888775421 12588889999998886
Q ss_pred -cCccchhhhH-HHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhH--HHHHHHHHHHhccCCHHHHH
Q 006912 422 -GCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQE 497 (626)
Q Consensus 422 -~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~ll~~l~~~l~d~~~~v~~ 497 (626)
+..+...... ...+|.++..+.+.+..++..|+++|++++..-.+ ....+ ...++.|+..+.+.++.++.
T Consensus 366 a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~------~~~~i~~~G~I~~Lv~LL~s~~~~v~~ 439 (458)
T 3nmz_A 366 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK------DQEALWDMGAVSMLKNLIHSKHKMIAM 439 (458)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH------HHHHHHHHTHHHHHHTTTTCSSHHHHH
T ss_pred cCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH------HHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 3332221211 23688999999999999999999999999842221 12222 45689999999888999999
Q ss_pred HHHHHHHHHHHHhc
Q 006912 498 AACSAFATLEEEAA 511 (626)
Q Consensus 498 ~a~~al~~l~~~~~ 511 (626)
.|+.+|.+++..-+
T Consensus 440 ~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 440 GSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHcCCH
Confidence 99999999987543
No 72
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.15 E-value=3.6e-09 Score=95.31 Aligned_cols=186 Identities=18% Similarity=0.136 Sum_probs=111.8
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhh
Q 006912 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (626)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 258 (626)
....+.+++.+.++++.+|..|+.+|..+... ..++.+...+.++++.+|..++.+|..+...
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIGDE------- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------
Confidence 45556666666676777777776666654321 1244455555666666666666666654321
Q ss_pred hHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCC
Q 006912 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (626)
Q Consensus 259 ~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~ 338 (626)
..++.+...+.+.++.+|..++..+..+... ..++.+...+...
T Consensus 76 ---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d~--------------------- 119 (201)
T 3ltj_A 76 ---RAVEPLIKALKDEDGWVRQSAAVALGQIGDE------------RAVEPLIKALKDE--------------------- 119 (201)
T ss_dssp ---GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCS---------------------
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHcCC---------------------
Confidence 1223334445566666777777666665331 1222332222110
Q ss_pred CCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHH
Q 006912 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGA 418 (626)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~ 418 (626)
++.+|..+..++..+.. +..++.+...+.+++ +.+|.+++.+++.
T Consensus 120 -------------------------~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~---~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 120 -------------------------DWFVRIAAAFALGEIGD-------ERAVEPLIKALKDED---GWVRQSAADALGE 164 (201)
T ss_dssp -------------------------SHHHHHHHHHHHHHHTC-------GGGHHHHHHHTTCSS---HHHHHHHHHHHHH
T ss_pred -------------------------CHHHHHHHHHHHHHhCC-------HHHHHHHHHHHcCCC---HHHHHHHHHHHHH
Confidence 12467777777766531 245566777777777 8889998888888
Q ss_pred HHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHH
Q 006912 419 IAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (626)
Q Consensus 419 l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (626)
+.. +..++.+...+.|+++.||..|..+|+++..
T Consensus 165 ~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 165 IGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred hCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 832 2356666677778888899998888887653
No 73
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.15 E-value=4.1e-08 Score=98.76 Aligned_cols=350 Identities=13% Similarity=0.032 Sum_probs=198.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC---------hHHHHHHHHhhcCC---------CCHHHHHHHHHHHH
Q 006912 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPD---------FNNYLAFILARAEG---------KSVEIRQAAGLLLK 76 (626)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~---------~~~~l~~il~~~~~---------~~~~~r~~a~~~l~ 76 (626)
+.+..++..+.+.|.. . ....|..+..+|+ .++.|+++|..... .++++|.-|+-.|.
T Consensus 32 ~~~~~l~~~~~~~~~~-~---~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ 107 (458)
T 3nmz_A 32 EMVYSLLSMLGTHDKD-D---MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALH 107 (458)
T ss_dssp -------------CCH-H---HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHH-H---HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHH
Confidence 4445555555555655 2 5556667766664 46678888864211 34799999999999
Q ss_pred HHHHHhhccCChhHHHHHH----------HhHhhhhhCCc-------HHHHH-------HHHHHHHHHHhhcC-cCch--
Q 006912 77 NNLRTAYKSMSPSNQQYIK----------SELLPCLGAAD-------RHIRS-------TVGTIVSVVVQLGG-IAGW-- 129 (626)
Q Consensus 77 ~~i~~~~~~l~~~~~~~i~----------~~L~~~l~~~~-------~~vr~-------~~~~~l~~i~~~~~-~~~~-- 129 (626)
|.+...-+.........+. ..+++++.... ..+|. ++..+|++++.... ....
T Consensus 108 ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~ 187 (458)
T 3nmz_A 108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNE 187 (458)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9887642221110011111 22344443221 11443 66667777643210 0111
Q ss_pred HHHHHHHHHHhcc-----------CChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHH
Q 006912 130 LELLQALVTCLDS-----------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRK 198 (626)
Q Consensus 130 ~~ll~~l~~~l~~-----------~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~ 198 (626)
.+.++.|...+.. .++.+++.+..+|..++..-...-. .+ ......+|.|++.|.+++.+++.
T Consensus 188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~-~i-----~~~~GaIp~LV~LL~s~~~~v~~ 261 (458)
T 3nmz_A 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA-TL-----CSMKGCMRALVAQLKSESEDLQQ 261 (458)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHH-HH-----HHCHHHHHHHHHGGGCSCHHHHH
T ss_pred CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHH-HH-----HHcCCcHHHHHHHHhCCCHHHHH
Confidence 2345666666631 2456888999999999875442210 00 01256799999999999999999
Q ss_pred HHHHHHHHHHhccchHHHHhHH--HHHHHHHHh-cCCCCHHHHHHHHHHHHHHHhhCccchhhhH--HHHHHHHHhhccC
Q 006912 199 LSLGSVNQFIMLMPSALFVSMD--QYLQGLFLL-SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL--RNLFEYMLQVNKD 273 (626)
Q Consensus 199 ~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~l~~~~~~~~~~ 273 (626)
.|+.+|..+...........+. ..++.|+.+ ....++.++..++.+|..+.....+.-.... ...++.+...+.+
T Consensus 262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~ 341 (458)
T 3nmz_A 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341 (458)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence 9999999986532222222222 457888886 4556788999999999888874432111100 1233333333332
Q ss_pred CCh----HHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCC
Q 006912 274 TDD----DVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (626)
Q Consensus 274 ~~~----~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 349 (626)
.++ +++..|..+|..++..-.
T Consensus 342 ~~~~~~~~v~~~A~~aL~nLs~~~a------------------------------------------------------- 366 (458)
T 3nmz_A 342 RSQTNTLAIIESGGGILRNVSSLIA------------------------------------------------------- 366 (458)
T ss_dssp CCSSSTTHHHHHHHHHHHHHHHHHT-------------------------------------------------------
T ss_pred CCCcchHHHHHHHHHHHHHHHhccc-------------------------------------------------------
Confidence 221 244444444444332000
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---chH-HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCcc
Q 006912 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK 425 (626)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~ 425 (626)
..++ .+. ...+|.+...+.+.+ ..+++.|+.+|+.++.+..+
T Consensus 367 -------------------------------~~~~~~~~i~~~G~i~~Lv~LL~~~~---~~v~~~A~~aL~nLa~~~~~ 412 (458)
T 3nmz_A 367 -------------------------------TNEDHRQILRENNCLQTLLQHLKSHS---LTIVSNACGTLWNLSARNPK 412 (458)
T ss_dssp -------------------------------TCHHHHHHHHHTTHHHHHHHHSSCSC---HHHHHHHHHHHHHHHSSCHH
T ss_pred -------------------------------CCHHHHHHHHHcccHHHHHHHHcCCC---hHHHHHHHHHHHHHHcCCHH
Confidence 0000 000 135677778888887 89999999999999976544
Q ss_pred chhhhHH-HHHHHHhhhcCCCchHHHHHHHHHHHHHHHH
Q 006912 426 GLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (626)
Q Consensus 426 ~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (626)
....... ..+|.++..+.+.++.+|..|+++|..++..
T Consensus 413 ~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 413 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 3322222 3689999999999999999999999999865
No 74
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.15 E-value=5.5e-07 Score=94.37 Aligned_cols=407 Identities=10% Similarity=0.075 Sum_probs=246.0
Q ss_pred CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhC--CcHHHHHHHHHHHHHHHhh
Q 006912 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQL 123 (626)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~--~~~~vr~~~~~~l~~i~~~ 123 (626)
+.+|.+.+...+.. ..+..+.....-+|... -++...|+.|.+..++.|.+ .+..+|..++.++..+...
T Consensus 253 ~e~~~~~l~~~~~~--~~~~~~~~a~L~lLsaA------Ci~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~ 324 (778)
T 3opb_A 253 TKGLSKLFKKRVFE--EQDLQFTKELLRLLSSA------CIDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSF 324 (778)
T ss_dssp TTTHHHHHHHHHHS--SCCHHHHHHHHHHHHHH------CCSHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGG
T ss_pred cccHHHHHHHHHhc--ccchHHHHHHHHHHHHH------hCCcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 45555555554432 33344333333333211 14556666666666555532 2357888888888887765
Q ss_pred cC--cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhch--hccccCCCCCccchhhhhHHHHHHhcCC-CChHHHH
Q 006912 124 GG--IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP--QVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRK 198 (626)
Q Consensus 124 ~~--~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~--~~~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~ 198 (626)
.. .....++.+.+.+.+.+++...++.++..|.++..... +.+.. -..+++.+++.+.+ .+..+..
T Consensus 325 ~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~---------d~~~L~~Lv~llk~~~d~s~~Y 395 (778)
T 3opb_A 325 TKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRS---------NESFTEILLTMIKSQKMTHCLY 395 (778)
T ss_dssp GTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHH---------CHHHHHHHHHHHTTTCCTTHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHh---------CHHHHHHHHHHHhCCCCchHHH
Confidence 42 24457788999999988776679999999999865432 22221 15567788888875 5667788
Q ss_pred HHHHHHHHHHhccchH---------------------------HH--HhHH----------HHHHHHHHhcCCCCHHHHH
Q 006912 199 LSLGSVNQFIMLMPSA---------------------------LF--VSMD----------QYLQGLFLLSNDPSAEVRK 239 (626)
Q Consensus 199 ~al~~l~~~~~~~~~~---------------------------~~--~~~~----------~~l~~l~~~~~~~~~~~~~ 239 (626)
.++..|.++..+.|.. .. ..+. ..++.|..++..+++.+|.
T Consensus 396 gal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re 475 (778)
T 3opb_A 396 GLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQ 475 (778)
T ss_dssp HHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHH
T ss_pred HHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHH
Confidence 8888888877654310 00 0110 3467788888888899999
Q ss_pred HHHHHHHHHHhhCccchhhhH-HHHHHHHHhhccCCC---hHHHHHHHhHHHHhhccCCcchhHHh-hhhhhHHHHhhhc
Q 006912 240 LVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTD---DDVALEACEFWHSYFEAQLPHENLKE-FLPRLVPVLLSNM 314 (626)
Q Consensus 240 ~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~~---~~v~~~a~~~l~~l~~~~~~~~~~~~-~l~~li~~l~~~l 314 (626)
.++++|..+....... ...+ ...++.++..+.... ...|..|...|..+.-.......+.. .....++.|+..+
T Consensus 476 ~A~~aL~nLS~d~~~R-~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL 554 (778)
T 3opb_A 476 QVVRIIYNITRSKNFI-PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELL 554 (778)
T ss_dssp HHHHHHHHHHTSGGGH-HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTS
T ss_pred HHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHc
Confidence 9999999997552211 1111 133444555544432 23788898888887643111111110 0125666666666
Q ss_pred ccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcC-------cchH
Q 006912 315 IYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG-------DEIL 387 (626)
Q Consensus 315 ~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~-------~~~~ 387 (626)
...... . + ....++ + ...--.+..|..+|..++..-+ ..++
T Consensus 555 ~~~~~~-~------------~----------------~~l~~~--~-~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii 602 (778)
T 3opb_A 555 PRSTPV-D------------D----------------NPLHND--E-QIKLTDNYEALLALTNLASSETSDGEEVCKHIV 602 (778)
T ss_dssp CCSSSC-S------------S----------------CC---C--C-CCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred CCCCCc-c------------c----------------cccccc--c-cccHHHHHHHHHHHHHHhcCCcccchHHHHHHH
Confidence 521100 0 0 000000 0 0000114458888888887642 1244
Q ss_pred H--hHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCcc---chhhh-HHH---HHHHHhhhcCCCchHHHHHHHHHHH
Q 006912 388 P--TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK---GLYPH-LSE---IVAFLIPLLDDKFPLIRSISCWTLS 458 (626)
Q Consensus 388 ~--~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~---~~~~~-l~~---l~~~l~~~l~d~~~~vr~~a~~~l~ 458 (626)
. ..++.+..++.+++ ..+|.+|+.++..++..... .+... -+. -++.++..+...+..+|.+|+++++
T Consensus 603 ~~~ga~~~L~~LL~s~n---~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALA 679 (778)
T 3opb_A 603 STKVYWSTIENLMLDEN---VPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFA 679 (778)
T ss_dssp HSHHHHHHHHHGGGCSS---HHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHhCCC---HHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4 37888999998888 99999999999999974421 22111 111 3778888888899999999999999
Q ss_pred HHHHHHhhhcCCCchhhhH--HHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHh
Q 006912 459 RFSKFIVQDIGHQNGREQF--EKVLMGLLKRILD--TNKRVQEAACSAFATLEEEA 510 (626)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~--~~ll~~l~~~l~d--~~~~v~~~a~~al~~l~~~~ 510 (626)
.++...+.. ....+ ...+..++..+++ +++.+|.+++.++.++++..
T Consensus 680 nLts~~~~i-----a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 680 NIATTIPLI-----AKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHCHHH-----HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HhcCCChHH-----HHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 996433211 01111 3466677777777 78999999999999999743
No 75
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.15 E-value=1.4e-07 Score=102.39 Aligned_cols=302 Identities=14% Similarity=0.153 Sum_probs=220.9
Q ss_pred hHhhhhhCCcHHHHHHHHHHHHHHHhhc---CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCC
Q 006912 97 ELLPCLGAADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (626)
Q Consensus 97 ~L~~~l~~~~~~vr~~~~~~l~~i~~~~---~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~ 173 (626)
.+++.+...+..-++.++..++.+.... ..-.| .++..+.+.+.+.... ++|+.++..+++..+..-.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~------ 88 (986)
T 2iw3_A 18 ELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPS------ 88 (986)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTT------
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCC------
Confidence 3666665433444566777777777643 12234 6888898888876444 9999999999987654211
Q ss_pred ccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhC
Q 006912 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP-SAEVRKLVCAAFNLLIEVR 252 (626)
Q Consensus 174 ~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~ 252 (626)
.+.++-.++|.++..+.|....||.+|-.+...++..++..-. ..++|.++..+... .+..+..++.++..+++..
T Consensus 89 ~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~ 165 (986)
T 2iw3_A 89 VEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI---KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA 165 (986)
T ss_dssp THHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 1355667889999999999999999999999999988776443 34477777766533 6899999999999999998
Q ss_pred ccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCC
Q 006912 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESL 332 (626)
Q Consensus 253 ~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~ 332 (626)
++.+...+++++|.+..++.|...+|...|...+..+|..- ....+.
T Consensus 166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~-~n~d~~-------------------------------- 212 (986)
T 2iw3_A 166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETV-DNKDIE-------------------------------- 212 (986)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC-CCTTTG--------------------------------
T ss_pred HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcC-CCcchh--------------------------------
Confidence 99999999999999999999999999999999988888751 111111
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHH
Q 006912 333 PDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAA 412 (626)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa 412 (626)
..+|.+.+.+.+|+ . --.
T Consensus 213 --------------------------------------------------------~~~~~~~~~~~~p~----~-~~~- 230 (986)
T 2iw3_A 213 --------------------------------------------------------RFIPSLIQCIADPT----E-VPE- 230 (986)
T ss_dssp --------------------------------------------------------GGHHHHHHHHHCTT----H-HHH-
T ss_pred --------------------------------------------------------hhHHHHHHHhcChh----h-hHH-
Confidence 33444555555543 1 111
Q ss_pred HHHHHHHHccC-c-cchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhcc
Q 006912 413 VLALGAIAEGC-I-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD 490 (626)
Q Consensus 413 l~~l~~l~~~~-~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d 490 (626)
|+..++..- . +--.|-+.-++|.+...|.+....+++.++..+.+||+...+ |....+|++.++|.+-+....
T Consensus 231 --~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~---~~~~~~f~~~l~p~~~~~~~~ 305 (986)
T 2iw3_A 231 --TVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED---PQVIAPFLGKLLPGLKSNFAT 305 (986)
T ss_dssp --HHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC---HHHHHHHHTTTHHHHHHHTTT
T ss_pred --HHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC---HHHHhhhhhhhhhHHHHHhhc
Confidence 222222211 1 112467778899999999999999999999999999987653 235678888899998887664
Q ss_pred -CCHHHHHHHHHHHHHHHHHh
Q 006912 491 -TNKRVQEAACSAFATLEEEA 510 (626)
Q Consensus 491 -~~~~v~~~a~~al~~l~~~~ 510 (626)
.+|.+|..|..|+..+.+..
T Consensus 306 ~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 306 IADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp CCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhh
Confidence 46999999999999998764
No 76
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.14 E-value=1.9e-09 Score=97.96 Aligned_cols=192 Identities=17% Similarity=0.130 Sum_probs=147.0
Q ss_pred HHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcC--ch--HHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhcccc
Q 006912 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--GW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (626)
Q Consensus 93 ~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~--~~--~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~ 168 (626)
.....|..+|.++++.+|..++.+++.++...... .. .+.++.+.+.+.++++.+|..++.+|+.++...+.....
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 44457777888999999999999999998643111 11 246899999999999999999999999998654432110
Q ss_pred CCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhH-HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006912 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (626)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 247 (626)
-.-...+|.++..+.++++.+|..|+.++..+....+......+ ...++.+..++.+++++++..++.+|..
T Consensus 92 -------i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 92 -------VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (210)
T ss_dssp -------HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -------HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 11245789999999999999999999999999876544332222 2568999999999999999999999999
Q ss_pred HHhhCccchhhhHH-HHHHHHHhhccCCChHHHHHHHhHHHHhhc
Q 006912 248 LIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (626)
Q Consensus 248 l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~ 291 (626)
++...++....... ..++.+...+.+.+.+++..|+.+|..+++
T Consensus 165 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 165 IASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 99865543322222 467778888888999999999999998875
No 77
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.13 E-value=5.7e-08 Score=80.30 Aligned_cols=214 Identities=20% Similarity=0.296 Sum_probs=162.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHH
Q 006912 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (626)
Q Consensus 221 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 300 (626)
.++..++..+.|+-+-++++++..+..++..+++...|.+..++..+- +++.-..-......++.++.. .+
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~---ksEaIpltqeIa~a~G~la~i--~P---- 102 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKE--KP---- 102 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---HCCSHHHHHHHHHHHHHHHHH--CH----
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hcccCchHHHHHHHHhHHHHh--CH----
Confidence 568889999999889999999999999999999999887777765432 222222233444556776654 22
Q ss_pred hhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh
Q 006912 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (626)
Q Consensus 301 ~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~ 380 (626)
+.+..++|.++......++ ..|-....+|..+++
T Consensus 103 e~v~~vVp~lfanyrigd~----------------------------------------------kikIn~~yaLeeIar 136 (253)
T 2db0_A 103 ELVKSMIPVLFANYRIGDE----------------------------------------------KTKINVSYALEEIAK 136 (253)
T ss_dssp HHHHHHHHHHHHHSCCCSH----------------------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHhcCCc----------------------------------------------cceecHHHHHHHHHH
Confidence 3455677777654432211 356667788888888
Q ss_pred hcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHH
Q 006912 381 VFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (626)
Q Consensus 381 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (626)
..|. .++.+..-+..++++++ -..|-+++..++.++++..+...|+ +|.+...+.|.+..||..|..+++.+
T Consensus 137 anP~-l~~~v~rdi~smltskd---~~Dkl~aLnFi~alGen~~~yv~Pf----LprL~aLL~D~deiVRaSaVEtL~~l 208 (253)
T 2db0_A 137 ANPM-LMASIVRDFMSMLSSKN---REDKLTALNFIEAMGENSFKYVNPF----LPRIINLLHDGDEIVRASAVEALVHL 208 (253)
T ss_dssp HCHH-HHHHHHHHHHHHTSCSS---HHHHHHHHHHHHTCCTTTHHHHGGG----HHHHHGGGGCSSHHHHHHHHHHHHHH
T ss_pred hChH-HHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHhccCccccCcc----hHHHHHHHcCcchhhhHHHHHHHHHH
Confidence 8764 44566667778888888 8999999999999988776655666 57778899999999999999999999
Q ss_pred HHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 006912 461 SKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (626)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (626)
++. .+.+..++...++-++|++..|+...-.+|++++
T Consensus 209 A~~----------npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 209 ATL----------NDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HTS----------CHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HHc----------CHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 863 3347788888889999999999999999999876
No 78
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.10 E-value=6.8e-09 Score=94.26 Aligned_cols=197 Identities=15% Similarity=0.126 Sum_probs=141.6
Q ss_pred hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccch
Q 006912 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (626)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 256 (626)
.....+.+...+.++++.+|..|+.+|..+....++....... ..++.+.+++.+++++++..++.+|..++...+...
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 3567788999999999999999999999998654433222221 568899999999999999999999999986554432
Q ss_pred hhhH-HHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCC
Q 006912 257 EPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDR 335 (626)
Q Consensus 257 ~~~l-~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~ 335 (626)
...+ ...++.++..+.+.+..++..|+..+..++.. .....
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~------------------------------------ 131 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQI------------------------------------ 131 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHH------------------------------------
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC--CHHHH------------------------------------
Confidence 2222 13566777778888888898888888888753 10000
Q ss_pred CCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHH
Q 006912 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLA 415 (626)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~ 415 (626)
. .+. -...++.+.+.+.+++ ..+|..++.+
T Consensus 132 ---------------------------------~-------~~~-------~~~~i~~L~~ll~~~~---~~v~~~a~~a 161 (210)
T 4db6_A 132 ---------------------------------Q-------AVI-------DAGALPALVQLLSSPN---EQILQEALWA 161 (210)
T ss_dssp ---------------------------------H-------HHH-------HTTHHHHHHHHTTCSC---HHHHHHHHHH
T ss_pred ---------------------------------H-------HHH-------HcCcHHHHHHHHcCCC---HHHHHHHHHH
Confidence 0 000 0135666777777877 9999999999
Q ss_pred HHHHHccCccchhhhH-HHHHHHHhhhcCCCchHHHHHHHHHHHHHHH
Q 006912 416 LGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (626)
Q Consensus 416 l~~l~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (626)
++.++....+...... ...++.+...+.++++.+|..|+++|++++.
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999986543322222 2378889999999999999999999998864
No 79
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.00 E-value=1.8e-06 Score=98.78 Aligned_cols=457 Identities=11% Similarity=0.039 Sum_probs=239.1
Q ss_pred CCHHHHHHHHHHHHHHh------cCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh--hccCChhHHHHHH----
Q 006912 28 SSTADKSQIWQQLQQYS------QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA--YKSMSPSNQQYIK---- 95 (626)
Q Consensus 28 d~~~~r~~a~~~L~~~~------~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~--~~~l~~~~~~~i~---- 95 (626)
+.. +|++..+.+..+. +.|+++..+...+. + ++..+..+..+|+...... +..+....+..++
T Consensus 109 ~~~-vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~---~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~ 183 (1204)
T 3a6p_A 109 ENH-IKDALSRIVVEMIKREWPQHWPDMLIELDTLSK---Q-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLT 183 (1204)
T ss_dssp CHH-HHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHH---T-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHH
T ss_pred cHH-HHHHHHHHHHHHHHHhCcccchHHHHHHHHHhc---C-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 455 8888888887742 24566666666553 2 4566777777777654321 2233332222222
Q ss_pred -------HhHhhhhhC-------------------CcHHHHHHHHHHHHHHHhhcCcCch----HHHHHHHHHHhccCCh
Q 006912 96 -------SELLPCLGA-------------------ADRHIRSTVGTIVSVVVQLGGIAGW----LELLQALVTCLDSNDI 145 (626)
Q Consensus 96 -------~~L~~~l~~-------------------~~~~vr~~~~~~l~~i~~~~~~~~~----~~ll~~l~~~l~~~~~ 145 (626)
..+...+.+ .+..++..+..++.....+.+.+.. ..+++.+...+. ++
T Consensus 184 ~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~--~~ 261 (1204)
T 3a6p_A 184 QNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLN--EQ 261 (1204)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGG--CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcC--CH
Confidence 222222322 1122333434444333322211111 236777776655 46
Q ss_pred hHHhHHHHHHHHHhhhch--hccccCCCCCccchhhhhHHHHHHhc--------CCCChHHHHHHHHHHHHHHhccch--
Q 006912 146 NHMEGAMDALSKICEDIP--QVLDSDVPGLAECPINIFLPRLLQFF--------QSPHTSLRKLSLGSVNQFIMLMPS-- 213 (626)
Q Consensus 146 ~~r~~~l~~l~~l~~~~~--~~~~~~~~~~~~~~~~~il~~l~~~l--------~~~~~~vr~~al~~l~~~~~~~~~-- 213 (626)
.+|..|+.||..++.... ..... ++.......+..+++.. .+.+.++++..++.+..+......
T Consensus 262 ~lr~~A~ecL~~i~s~~~~~~~~~~----li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~ 337 (1204)
T 3a6p_A 262 ELQLGAAECLLIAVSRKGKLEDRKP----LMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALL 337 (1204)
T ss_dssp TTHHHHHHHHHHHHTCCSCHHHHGG----GGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHH----HHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999987542 11110 00011111233344433 122356666666666665532211
Q ss_pred ------HHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhC----ccchhhhHHHHHHHH---HhhccCCC-----
Q 006912 214 ------ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR----PSFLEPHLRNLFEYM---LQVNKDTD----- 275 (626)
Q Consensus 214 ------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~l~~l~~~~---~~~~~~~~----- 275 (626)
...+.+..+++.++..+.+++..+...++..+..+.+.. ...+.+++..+++.+ +..+..++
T Consensus 338 ~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~ 417 (1204)
T 3a6p_A 338 GADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSP 417 (1204)
T ss_dssp HTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSST
T ss_pred hccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCc
Confidence 122346688999999999999999999999998887653 244677888888887 43332111
Q ss_pred -------------------hHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCC
Q 006912 276 -------------------DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRD 336 (626)
Q Consensus 276 -------------------~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~ 336 (626)
.+.|....+++..++.. .+...-+++ .+.+...+...-+...-|.
T Consensus 418 ~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v--~p~~~l~~v---~~~l~~~l~~~l~~~~~~~----------- 481 (1204)
T 3a6p_A 418 SCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRL--DPKTSFQMA---GEWLKYQLSTFLDAGSVNS----------- 481 (1204)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHH---HHHHHHHHTCC-------------------
T ss_pred chhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHH---HHHHHHHHhhhhccccccc-----------
Confidence 01244444444444432 111111111 1222111111000000000
Q ss_pred CCCCcccccccCCCCC-CCCCCCccccccccHHHHHHHHHHHHHhhc---C--cchHHhHHHHHHHh-hc--CCCCCChh
Q 006912 337 QDLKPRFHSSRLHGSE-NPEDDDDDIVNVWNLRKCSAAALDVLSNVF---G--DEILPTLMPVIQAK-LS--ASGDEAWK 407 (626)
Q Consensus 337 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~---~--~~~~~~l~~~l~~~-l~--~~~~~~~~ 407 (626)
.++... +.. ... .....|....+....++.+...+ . +.....+.+.+... ++ ..+ +.
T Consensus 482 -----~~~~~~--~~~~~~~----~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~---p~ 547 (1204)
T 3a6p_A 482 -----CSAVGT--GEGSLCS----VFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKD---PL 547 (1204)
T ss_dssp ----------------CCSC----SSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSC---HH
T ss_pred -----cccccc--ccccccC----cCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCC---hH
Confidence 000000 000 000 01223555566556666555544 1 11111223333333 32 235 89
Q ss_pred HHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCC------------CchHHHHHHHHHHHHHHHHHhhhcCCCchhh
Q 006912 408 DREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD------------KFPLIRSISCWTLSRFSKFIVQDIGHQNGRE 475 (626)
Q Consensus 408 ~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 475 (626)
.|...+.+++.+....... ..+++.++..++..+.+ .+..||.+|+.++.++++.+++. ..+
T Consensus 548 l~~~~i~~l~~l~~~~~~~-p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~-----L~p 621 (1204)
T 3a6p_A 548 ILSCVLTNVSALFPFVTYR-PEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQL-----VLP 621 (1204)
T ss_dssp HHHHHHHHHHHHGGGGGTC-GGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHH-----HGG
T ss_pred HHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHH-----HHH
Confidence 9999999999988876422 35777788888777655 34589999999999999988764 678
Q ss_pred hHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHhh
Q 006912 476 QFEKVLMGLLKRILDTN---KRVQEAACSAFATLEEEAAE--ELAPRLEIILQHLMMAFGK 531 (626)
Q Consensus 476 ~~~~ll~~l~~~l~d~~---~~v~~~a~~al~~l~~~~~~--~~~~~l~~i~~~l~~~l~~ 531 (626)
+++.+...+-..+.... ..-+..-..++..++...++ ....|+..+++.+.+.+..
T Consensus 622 ~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 622 NFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp GHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 88888888877765332 45556667777776444332 2234566666666655543
No 80
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.95 E-value=3.1e-06 Score=90.72 Aligned_cols=330 Identities=15% Similarity=0.077 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhc---cCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHH
Q 006912 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD---SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR 184 (626)
Q Consensus 108 ~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~---~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~ 184 (626)
..+..+...+|.|-.... .+-+..|...+. ++++.++.+|+..+|.+...... ..+..
T Consensus 373 ~~k~sA~aSLGlIh~g~~----~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---------------~~~~l 433 (963)
T 4ady_A 373 WAKFTATASLGVIHKGNL----LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---------------DTTDY 433 (963)
T ss_dssp HHHHHHHHHHHHHTSSCT----TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---------------HHHHH
T ss_pred HHHHHHHHHhhhhccCch----HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---------------HHHHH
Confidence 345555556666654432 233555555555 56788999999999887654432 23445
Q ss_pred HHHhcCCCC--------hHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccch
Q 006912 185 LLQFFQSPH--------TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (626)
Q Consensus 185 l~~~l~~~~--------~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 256 (626)
|...+.+++ +.+|..|+-.|+.+.-.... +.+++.|...+.+++..++..+.-+|+.+.-..+.
T Consensus 434 L~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-- 505 (963)
T 4ady_A 434 LKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-- 505 (963)
T ss_dssp HHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC--
T ss_pred HHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC--
Confidence 555555433 67888888888876432211 12344555555555666676777777665432222
Q ss_pred hhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCC
Q 006912 257 EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRD 336 (626)
Q Consensus 257 ~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~ 336 (626)
...+..++..+. .+.++.+|+.+...|+-+.-. ..+. .+.++..+..
T Consensus 506 ~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~~g--~~e~----~~~li~~L~~------------------------ 552 (963)
T 4ady_A 506 PEAIHDMFTYSQ---ETQHGNITRGLAVGLALINYG--RQEL----ADDLITKMLA------------------------ 552 (963)
T ss_dssp HHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTT--CGGG----GHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhhCC--ChHH----HHHHHHHHHh------------------------
Confidence 122334444433 355677888877777665322 1121 2222222210
Q ss_pred CCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-chHHhHHHHHHHhhcCCCCCChhHHHHHHHH
Q 006912 337 QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLA 415 (626)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~ 415 (626)
..++.+|..+..+++.-....|. ..++.++. ....+.+ ..+|.+|+.+
T Consensus 553 -------------------------~~dp~vRygaa~alglAyaGTGn~~aIq~LL~---~~~~d~~---d~VRraAVia 601 (963)
T 4ady_A 553 -------------------------SDESLLRYGGAFTIALAYAGTGNNSAVKRLLH---VAVSDSN---DDVRRAAVIA 601 (963)
T ss_dssp -------------------------CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH---HHHHCSC---HHHHHHHHHH
T ss_pred -------------------------CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH---HhccCCc---HHHHHHHHHH
Confidence 01134787777777655555555 33333333 3345666 7899999999
Q ss_pred HHHHHccCccchhhhHHHHHHHHhhhc-CCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHH
Q 006912 416 LGAIAEGCIKGLYPHLSEIVAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKR 494 (626)
Q Consensus 416 l~~l~~~~~~~~~~~l~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~ 494 (626)
||.+..+-.+ .++.++..+ ++.++.||+.|+.++|.++-.-+ ...++..|....+|++..
T Consensus 602 LGlI~~g~~e--------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~-----------~~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 602 LGFVLLRDYT--------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG-----------LQSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp HHHHTSSSCS--------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC-----------CHHHHHHHHHHHTCSSHH
T ss_pred HHhhccCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC-----------cHHHHHHHHHHccCCCHH
Confidence 9998766432 244455533 57889999999999998874211 145666677778899999
Q ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHH
Q 006912 495 VQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ--RRNLRIVYDAIGTL 547 (626)
Q Consensus 495 v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~--~~~~~~~~~~l~~i 547 (626)
||..|+.+|+.+.....+...|.+..++..|.....+.+ ...+-.+.-+.|.+
T Consensus 663 Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 663 VRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 999999999998776667777889999998888886533 23344555555555
No 81
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.89 E-value=6.3e-07 Score=74.21 Aligned_cols=215 Identities=15% Similarity=0.169 Sum_probs=160.9
Q ss_pred HHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCC
Q 006912 261 RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (626)
Q Consensus 261 ~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~ 340 (626)
..++.-++..+.|.-+.|+.+|+..+.++++. ..+...|.+.+++..+-+ ++
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~--~~el~epl~~kL~vm~~k----sE---------------------- 82 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKT--REDLYEPMLKKLFSLLKK----SE---------------------- 82 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHHH----CC----------------------
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHH--hHHHHHHHHHHHHHHHhh----cc----------------------
Confidence 35666677788888899999999999999886 666677777666554421 11
Q ss_pred cccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHH
Q 006912 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (626)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~ 420 (626)
..........+++.++..-| +.+..++|.+.....-.+ ++.|...-.+++.++
T Consensus 83 -----------------------aIpltqeIa~a~G~la~i~P-e~v~~vVp~lfanyrigd---~kikIn~~yaLeeIa 135 (253)
T 2db0_A 83 -----------------------AIPLTQEIAKAFGQMAKEKP-ELVKSMIPVLFANYRIGD---EKTKINVSYALEEIA 135 (253)
T ss_dssp -----------------------SHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHSCCCS---HHHHHHHHHHHHHHH
T ss_pred -----------------------cCchHHHHHHHHhHHHHhCH-HHHHhhHHHHHHHHhcCC---ccceecHHHHHHHHH
Confidence 00123345667777776665 455677888887777778 999999999999998
Q ss_pred ccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHH
Q 006912 421 EGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAAC 500 (626)
Q Consensus 421 ~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~ 500 (626)
...+. .++.++.-+...+.+++..=|.+|+.+++.+++ .+..|..+.+|.++..+.|.+.-||..|.
T Consensus 136 ranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe---------n~~~yv~PfLprL~aLL~D~deiVRaSaV 202 (253)
T 2db0_A 136 KANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGE---------NSFKYVNPFLPRIINLLHDGDEIVRASAV 202 (253)
T ss_dssp HHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT---------TTHHHHGGGHHHHHGGGGCSSHHHHHHHH
T ss_pred HhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc---------cCccccCcchHHHHHHHcCcchhhhHHHH
Confidence 86653 455567777778889998888999888887776 35688889999999999999999999999
Q ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 006912 501 SAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (626)
Q Consensus 501 ~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~ 548 (626)
.+|..++..- |-+..++..-+.-+++.++.++..+-++++.+.
T Consensus 203 EtL~~lA~~n-----pklRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 203 EALVHLATLN-----DKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHHHTSC-----HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 9999997642 334555555555666777777778888888775
No 82
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.88 E-value=8.5e-07 Score=83.94 Aligned_cols=155 Identities=15% Similarity=0.200 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhccCC------------hhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHH-hcCCCChHH
Q 006912 130 LELLQALVTCLDSND------------INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ-FFQSPHTSL 196 (626)
Q Consensus 130 ~~ll~~l~~~l~~~~------------~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~-~l~~~~~~v 196 (626)
++.++...+.+.++. ...|..++..|..+++....... -.-...+|.++. .|.++++.+
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~--------~~~~G~l~~Lv~~lL~s~~~~v 98 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAAD--------FCQLSGMHLLVGRYLEAGAAGL 98 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHH--------HHHTTHHHHHHHTTTTCSSHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHH--------HHHcCCHHHHHHHHHcCCCHHH
Confidence 455666666666542 24677788888888876543210 011356788999 999999999
Q ss_pred HHHHHHHHHHHHhccchHHHHhHH-HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhccC
Q 006912 197 RKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKD 273 (626)
Q Consensus 197 r~~al~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~ 273 (626)
|..|+.+++.++...|..-...+. ..++.|+.++. +++..+++.++.+|..++...+........ ..++.+...+.+
T Consensus 99 r~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~ 178 (296)
T 1xqr_A 99 RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 178 (296)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC
Confidence 999999999998765532211111 45788888776 457899999999999999876653333222 456667777777
Q ss_pred CChHHHHHHHhHHHHhhcc
Q 006912 274 TDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 274 ~~~~v~~~a~~~l~~l~~~ 292 (626)
.+..++..|+..+..++..
T Consensus 179 ~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 179 QVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 7888888888888887653
No 83
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.84 E-value=1.6e-07 Score=91.55 Aligned_cols=262 Identities=14% Similarity=0.039 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHhHH--HHHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHhhCccchhhh--
Q 006912 195 SLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSN-----------DPSAEVRKLVCAAFNLLIEVRPSFLEPH-- 259 (626)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~-----------~~~~~~~~~~~~~l~~l~~~~~~~~~~~-- 259 (626)
.....|+++|..+... + .....+. ..++.|..++. ..++.++..++.+|..++...... +..
T Consensus 47 ~~~~~A~~aL~nls~d-~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~-k~~i~ 123 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-E-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN-KATLC 123 (354)
T ss_dssp GTHHHHHHHHHHHHTS-H-HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCC-H-HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHH-HHHHH
Confidence 4555778888887654 2 2232221 23455555442 124678999999999998654321 111
Q ss_pred -HHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCC--cchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCC
Q 006912 260 -LRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL--PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRD 336 (626)
Q Consensus 260 -l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~ 336 (626)
....++.++..+.+.+++++..|...|..++.... ....+. -...+|.++..+....+
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~--~~G~Ip~Lv~lL~~~~~----------------- 184 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR--EVGSVKALMECALEVKK----------------- 184 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHH--HTTHHHHHHHHHHHCCC-----------------
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHH--HCCCHHHHHHHHhcCCC-----------------
Confidence 23567888888888899999999999999976311 111111 12345555554321110
Q ss_pred CCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---chH--HhHHHHHHHhhcCCCCC-ChhHHH
Q 006912 337 QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EIL--PTLMPVIQAKLSASGDE-AWKDRE 410 (626)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~--~~l~~~l~~~l~~~~~~-~~~~r~ 410 (626)
..++..|..+|..++....+ .+. ...+|.+.+.+.+++.. +..+++
T Consensus 185 ----------------------------~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~ 236 (354)
T 3nmw_A 185 ----------------------------ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 236 (354)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHH
Confidence 12566777888888763321 222 35778888888775421 125888
Q ss_pred HHHHHHHHHHc---cCccchhhhH-HHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhH--HHHHHHH
Q 006912 411 AAVLALGAIAE---GCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGL 484 (626)
Q Consensus 411 aal~~l~~l~~---~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~ll~~l 484 (626)
.+..+|..++. +..+...... ...+|.++..+.+.+..++..|+++|++++....+ ....+ ...++.|
T Consensus 237 ~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~------~~~~i~~~G~i~~L 310 (354)
T 3nmw_A 237 SGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK------DQEALWDMGAVSML 310 (354)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH------HHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH------HHHHHHHCCCHHHH
Confidence 89999998886 3332211111 13688999999999999999999999999842221 12222 4568899
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhcc
Q 006912 485 LKRILDTNKRVQEAACSAFATLEEEAAE 512 (626)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~~ 512 (626)
+..+.+.++.++..|+.+|.+++..-+.
T Consensus 311 v~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 311 KNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999988999999999999999976543
No 84
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.84 E-value=1.7e-07 Score=90.02 Aligned_cols=312 Identities=13% Similarity=0.060 Sum_probs=173.1
Q ss_pred hhhhhCC--c-HHHHHHHHHHHHHHHhhc--CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCC
Q 006912 99 LPCLGAA--D-RHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (626)
Q Consensus 99 ~~~l~~~--~-~~vr~~~~~~l~~i~~~~--~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~ 173 (626)
.+.++++ + ...|..+.+++..+...+ +......+++.+.+++++++...|+.+...+..+.+. ++
T Consensus 31 ~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~--------- 100 (355)
T 3tjz_B 31 ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AE--------- 100 (355)
T ss_dssp GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SS---------
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HH---------
Confidence 4677764 3 344567777777777553 2234578899999999999999999888888777665 21
Q ss_pred ccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCc
Q 006912 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (626)
Q Consensus 174 ~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 253 (626)
..+ -+...+.+-++++++-+|-.|+++++.+... +.++.+.+.+-+.+.|.++.||+.|+-+...+....|
T Consensus 101 --e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~------~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p 171 (355)
T 3tjz_B 101 --DVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDS------TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF 171 (355)
T ss_dssp --CGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH
T ss_pred --HHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH
Confidence 112 4566788889999999999999999998642 1334557788888999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCC
Q 006912 254 SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLP 333 (626)
Q Consensus 254 ~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~ 333 (626)
+.++.+ ++.+...+.+.+..|...|+..+..+.+. . +..+.++++.+... ..
T Consensus 172 e~v~~~----~~~l~~ll~d~n~~V~~~Al~lL~ei~~~--d----~~a~~kLv~~l~~~-~l----------------- 223 (355)
T 3tjz_B 172 DVVKRW----VNEAQEAASSDNIMVQYHALGLLYHVRKN--D----RLAVSKMISKFTRH-GL----------------- 223 (355)
T ss_dssp HHHHTT----HHHHHHHTTCSSHHHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHSS-CC-----------------
T ss_pred HHHHHH----HHHHHHHhcCCCccHHHHHHHHHHHHHhh--c----hHHHHHHHHHHhcC-CC-----------------
Confidence 877654 44445567788888999999988888764 2 12344444443210 00
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---chHHhHHHHHHHhhcCCCCCChhHHH
Q 006912 334 DRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDRE 410 (626)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~ 410 (626)
...|. -...+..+....++ ..-..+++.+...+++.+ ..+..
T Consensus 224 ----------------------------~~~~~----q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~---~aVvy 268 (355)
T 3tjz_B 224 ----------------------------KSPFA----YCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKH---EMVVY 268 (355)
T ss_dssp ----------------------------SCHHH----HHHHHHHHTCC-----------------CCCCCSS---HHHHH
T ss_pred ----------------------------cChHH----HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCC---hHHHH
Confidence 00111 11222222222222 223467777888888877 88998
Q ss_pred HHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhcc
Q 006912 411 AAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD 490 (626)
Q Consensus 411 aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d 490 (626)
.|+.++-.+...... .+...++.+...+.++++.+|..|+..|..+....+ ..+...-..+..++.|
T Consensus 269 Ea~k~I~~l~~~~~~----~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P---------~~v~~~n~~ie~li~d 335 (355)
T 3tjz_B 269 EAASAIVNLPGCSAK----ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP---------SAVTACNLDLENLVTD 335 (355)
T ss_dssp HHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------
T ss_pred HHHHHHHhccCCCHH----HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc---------HHHHHHHHHHHHHccC
Confidence 888888776442211 122223444455667889999999999988887543 3345555667788888
Q ss_pred CCHHHHHHHHHHHHH
Q 006912 491 TNKRVQEAACSAFAT 505 (626)
Q Consensus 491 ~~~~v~~~a~~al~~ 505 (626)
++..++..|..+|-+
T Consensus 336 ~n~sI~t~Aittllk 350 (355)
T 3tjz_B 336 ANRSIATLAITTLLK 350 (355)
T ss_dssp ---------------
T ss_pred CcHhHHHHHHHHhhh
Confidence 887776666655543
No 85
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.83 E-value=6.9e-08 Score=91.46 Aligned_cols=175 Identities=14% Similarity=0.082 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhhcCc--chH-HhHHHHHHH-hhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHH-HHHHHHhhhc
Q 006912 368 RKCSAAALDVLSNVFGD--EIL-PTLMPVIQA-KLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLL 442 (626)
Q Consensus 368 r~~a~~~l~~l~~~~~~--~~~-~~l~~~l~~-~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~l~~~l~~~l 442 (626)
|..|...|..++..... .+. .-.+|.+.. ++.+++ ..+|..|+++++.++.+.+..-...+. ..+|.++..+
T Consensus 57 k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~---~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 57 REGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA---AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSS---HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCC---HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 55666777766664432 221 134566777 888888 999999999999999865432111221 3678888888
Q ss_pred C-CCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchH-H
Q 006912 443 D-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL-E 519 (626)
Q Consensus 443 ~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l-~ 519 (626)
. ++++.+|..|+|+|+.++...++. ...+. ...++.++..++++++.++..|+++|.+++....+...... .
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~-----~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~ 208 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAG-----LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM 208 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHH-----HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHH-----HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHc
Confidence 7 468999999999999998654321 12222 35788899999999999999999999999986333222222 2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006912 520 IILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (626)
Q Consensus 520 ~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~ 550 (626)
.+++.|..++...+..+++.++.+|++++..
T Consensus 209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 5778888888888888999999999999865
No 86
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.77 E-value=1.7e-06 Score=84.25 Aligned_cols=249 Identities=13% Similarity=0.138 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHhcC---------CChHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHHHHHhhccCChhHHH--
Q 006912 32 DKSQIWQQLQQYSQF---------PDFNNYLAFILARA--------EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ-- 92 (626)
Q Consensus 32 ~r~~a~~~L~~~~~~---------p~~~~~l~~il~~~--------~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~-- 92 (626)
...+|...|.++..+ -+.++.|+.+|..+ ...++.+|..|+-.|.+.-.. +++.+.
T Consensus 48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~-----~~~~k~~i 122 (354)
T 3nmw_A 48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG-----DVANKATL 122 (354)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSS-----CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcC-----CHHHHHHH
Confidence 455566666655432 35677788888531 123467899999999876422 222333
Q ss_pred ----HHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcC---ch--HHHHHHHHHHh-ccCChhHHhHHHHHHHHHhhhc
Q 006912 93 ----YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---GW--LELLQALVTCL-DSNDINHMEGAMDALSKICEDI 162 (626)
Q Consensus 93 ----~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~---~~--~~ll~~l~~~l-~~~~~~~r~~~l~~l~~l~~~~ 162 (626)
...+.|+..|.++++.++..++.+|.+++...... .. .+.+|.|.+.+ .++++.+++.++.+|..+....
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 34567888888999999999999999998642111 11 23478888864 5678889999999999988744
Q ss_pred hhccccCCCCCccchhhhhHHHHHHhcCCCCh----HHHHHHHHHHHHHHhc---cchHHHHhHH--HHHHHHHHhcCCC
Q 006912 163 PQVLDSDVPGLAECPINIFLPRLLQFFQSPHT----SLRKLSLGSVNQFIML---MPSALFVSMD--QYLQGLFLLSNDP 233 (626)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~----~vr~~al~~l~~~~~~---~~~~~~~~~~--~~l~~l~~~~~~~ 233 (626)
.+. ...+ ......+|.|.+.+.+++. .++..|+.+|..+... .++ ....+. ..++.|..++.++
T Consensus 203 ~~n-k~~i-----~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~-~~~~i~~~g~i~~Lv~lL~~~ 275 (354)
T 3nmw_A 203 TEN-KADI-----CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED-HRQILRENNCLQTLLQHLKSH 275 (354)
T ss_dssp HHH-HHHH-----HHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHTTTHHHHHHHHTTCS
T ss_pred hhh-hHHH-----HHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHH-HHHHHHHcCCHHHHHHHHcCC
Confidence 321 0000 0025788999999987654 5899999999888752 222 222221 4588999999999
Q ss_pred CHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 234 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
+..+++.++.+|..++...++.....++ ..++.+...+.+.++.++..|...|..++..
T Consensus 276 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 276 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999998654443322222 4677888888888999999999999999876
No 87
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.70 E-value=2.1e-05 Score=84.48 Aligned_cols=301 Identities=14% Similarity=0.103 Sum_probs=191.5
Q ss_pred CCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCC--------hhHHhHHHHHHHHHhhhchhccccCCCCCcc
Q 006912 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND--------INHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (626)
Q Consensus 104 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~--------~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~ 175 (626)
+.++.+|..++..+|.+..... .+.+..|...+.+++ +.+|.+|...||.+.-...
T Consensus 406 s~~~~ik~GAllaLGli~ag~~----~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~------------ 469 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFG----RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA------------ 469 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTT----HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC------------
T ss_pred CCcHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC------------
Confidence 4578899999999998875432 245666777676544 6788899888887643222
Q ss_pred chhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhcc-chHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCcc
Q 006912 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM-PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (626)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 254 (626)
-.+++..|.+.+.+.+..+|..|.-+++.+.-.. .... +..++..+. .+.++.+|..+...|..+.-..++
T Consensus 470 --~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a---i~~LL~~~~---e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 470 --NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA---IHDMFTYSQ---ETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp --CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH---HHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred --CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH---HHHHHHHHh---ccCcHHHHHHHHHHHHhhhCCChH
Confidence 1466777888887777778888888888764322 2222 222233333 345678999888888887666665
Q ss_pred chhhhHHHHHHHHHhhccCCChHHHHHHHhHHHH-hhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCC
Q 006912 255 FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS-YFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLP 333 (626)
Q Consensus 255 ~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~-l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~ 333 (626)
... .++..+. .+.++.+|..+.-.++- .+.. ... ..++.++..+..
T Consensus 542 ~~~----~li~~L~---~~~dp~vRygaa~alglAyaGT-Gn~----~aIq~LL~~~~~--------------------- 588 (963)
T 4ady_A 542 LAD----DLITKML---ASDESLLRYGGAFTIALAYAGT-GNN----SAVKRLLHVAVS--------------------- 588 (963)
T ss_dssp GGH----HHHHHHH---HCSCHHHHHHHHHHHHHHTTTS-CCH----HHHHHHHHHHHH---------------------
T ss_pred HHH----HHHHHHH---hCCCHHHHHHHHHHHHHHhcCC-CCH----HHHHHHHHHhcc---------------------
Confidence 443 3333322 35678888887765543 2322 122 223334443321
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHH
Q 006912 334 DRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAV 413 (626)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal 413 (626)
+.. ..+|++|..+|+.+...-+ +.++. .+..+.++.+ |.+|.++.
T Consensus 589 ------------------d~~----------d~VRraAViaLGlI~~g~~-e~v~r---lv~~L~~~~d---~~VR~gAa 633 (963)
T 4ady_A 589 ------------------DSN----------DDVRRAAVIALGFVLLRDY-TTVPR---IVQLLSKSHN---AHVRCGTA 633 (963)
T ss_dssp ------------------CSC----------HHHHHHHHHHHHHHTSSSC-SSHHH---HTTTGGGCSC---HHHHHHHH
T ss_pred ------------------CCc----------HHHHHHHHHHHHhhccCCH-HHHHH---HHHHHHhcCC---HHHHHHHH
Confidence 000 0378888888887643332 33322 2223344566 99999999
Q ss_pred HHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhcc--C
Q 006912 414 LALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD--T 491 (626)
Q Consensus 414 ~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d--~ 491 (626)
.++|.+..+.+. ..++..|.....|++..||..|+.++|.+...-.+ ...+.+..++..+.+...| .
T Consensus 634 lALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn-----a~~~rva~~l~~L~~~~~dk~~ 702 (963)
T 4ady_A 634 FALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE-----KLNPQVADINKNFLSVITNKHQ 702 (963)
T ss_dssp HHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT-----TTCTTHHHHHHHHHHHHHCSSS
T ss_pred HHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc-----ccchHHHHHHHHHHHHHhcccc
Confidence 999999876542 34566777778899999999999999988753221 1234677778888887765 4
Q ss_pred CHHHHHHHHHHHHHHH
Q 006912 492 NKRVQEAACSAFATLE 507 (626)
Q Consensus 492 ~~~v~~~a~~al~~l~ 507 (626)
++..+-.+.-|.+-+-
T Consensus 703 d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 703 EGLAKFGACVAQGIMN 718 (963)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHh
Confidence 5777877777777664
No 88
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.65 E-value=1.4e-06 Score=79.59 Aligned_cols=181 Identities=18% Similarity=0.183 Sum_probs=133.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccC-CcchhHHh-hhhhhH
Q 006912 230 SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-LPHENLKE-FLPRLV 307 (626)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~-~l~~li 307 (626)
+-+.+...+..+++.|...++..++.+...++-++.++.-.+.+.+..+...+++++..+...- .....+.+ -...++
T Consensus 55 lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~l 134 (266)
T 2of3_A 55 LFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFV 134 (266)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3445788888999999998888777766777777887765666778889999999988875431 01111222 235677
Q ss_pred HHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchH
Q 006912 308 PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL 387 (626)
Q Consensus 308 ~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 387 (626)
|.++..+-+..+ .+|..+...+..+...++..
T Consensus 135 P~LveKlGd~k~----------------------------------------------~vR~~~r~il~~l~~v~~~~-- 166 (266)
T 2of3_A 135 PYLLLKTGEAKD----------------------------------------------NMRTSVRDIVNVLSDVVGPL-- 166 (266)
T ss_dssp HHHHHGGGCSSH----------------------------------------------HHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHhCCChH----------------------------------------------HHHHHHHHHHHHHHHHCCHH--
Confidence 777665543221 48999999999888877653
Q ss_pred HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHH---HHHhhhcCCCchHHHHHHHHHHHHHHHHH
Q 006912 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIV---AFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (626)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~---~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (626)
.+++.+.+.+.+.+ |+.|+.++..++.+.+..+-. + ...+ |.+...+.|++..||.+|+.++..+....
T Consensus 167 -~v~~~l~~g~ksKN---~R~R~e~l~~l~~li~~~G~~--~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 167 -KMTPMLLDALKSKN---ARQRSECLLVIEYYITNAGIS--P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp -HHHHHHHHGGGCSC---HHHHHHHHHHHHHHHHHHCSG--G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHccCC---HHHHHHHHHHHHHHHHhcCCC--c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 46677777888887 999999999999998765422 1 2246 89999999999999999999998888776
Q ss_pred hh
Q 006912 465 VQ 466 (626)
Q Consensus 465 ~~ 466 (626)
++
T Consensus 239 Gd 240 (266)
T 2of3_A 239 GD 240 (266)
T ss_dssp TT
T ss_pred hH
Confidence 53
No 89
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.65 E-value=1.5e-06 Score=83.61 Aligned_cols=290 Identities=12% Similarity=-0.007 Sum_probs=155.0
Q ss_pred ccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhch
Q 006912 84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (626)
Q Consensus 84 ~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~ 163 (626)
..++......+.-.+++.+.+++..+|+..-..+..+++. +.... -..+.+.+-++++++-+|-.|+.+++.+...
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~-- 134 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDS-- 134 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--
Confidence 4566666677888888899999999999888777776665 33333 5678899999999999999999999887541
Q ss_pred hccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006912 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (626)
Q Consensus 164 ~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 243 (626)
..+..+.+.+.+++.|.++.||+.|+-|..++....|+.. ..|++.+..++.+.++.+...++.
T Consensus 135 ------------~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~~~~~~l~~ll~d~n~~V~~~Al~ 198 (355)
T 3tjz_B 135 ------------TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----KRWVNEAQEAASSDNIMVQYHALG 198 (355)
T ss_dssp ------------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----HTTHHHHHHHTTCSSHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----HHHHHHHHHHhcCCCccHHHHHHH
Confidence 2357888899999999999999999999999988776644 346788888889999999888888
Q ss_pred HHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhh
Q 006912 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (626)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~ 323 (626)
++..+.+..+..+ ..+++.+... .-.++-....-++++..++.. . ....-..+++.+.++++...
T Consensus 199 lL~ei~~~d~~a~----~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~--d---~~~~~~~~~~~l~~~L~~~~----- 263 (355)
T 3tjz_B 199 LLYHVRKNDRLAV----SKMISKFTRH-GLKSPFAYCMMIRVASRQLED--E---DGSRDSPLFDFIESCLRNKH----- 263 (355)
T ss_dssp HHHHHHTTCHHHH----HHHHHHHHSS-CCSCHHHHHHHHHHHTCC----------------------CCCCCSS-----
T ss_pred HHHHHHhhchHHH----HHHHHHHhcC-CCcChHHHHHHHHHHHHhccc--c---chhhHHHHHHHHHHHHcCCC-----
Confidence 8888876543322 2333332221 011111111222222222221 0 00011122222222222110
Q ss_pred hhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCC
Q 006912 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGD 403 (626)
Q Consensus 324 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 403 (626)
-.+-..|+.++-.+.. .+...+......+..++.+++
T Consensus 264 -----------------------------------------~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~fLss~d- 300 (355)
T 3tjz_B 264 -----------------------------------------EMVVYEAASAIVNLPG-CSAKELAPAVSVLQLFCSSPK- 300 (355)
T ss_dssp -----------------------------------------HHHHHHHHHHHTC------------CCCTHHHHHHSSS-
T ss_pred -----------------------------------------hHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHcCCC-
Confidence 1233334444444433 222333444566777888888
Q ss_pred CChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHH
Q 006912 404 EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (626)
Q Consensus 404 ~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l 457 (626)
+..|++|+..+..++...++.+..+ -..+...+.|++..++..|+.+|
T Consensus 301 --~niryvaLr~L~~l~~~~P~~v~~~----n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 301 --AALRYAAVRTLNKVAMKHPSAVTAC----NLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp --SSSHHHHHHCC-----------------------------------------
T ss_pred --chHHHHHHHHHHHHHHHCcHHHHHH----HHHHHHHccCCcHhHHHHHHHHh
Confidence 9999999999999988765444333 34566788899988888776655
No 90
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.64 E-value=3.1e-05 Score=67.40 Aligned_cols=149 Identities=12% Similarity=0.116 Sum_probs=119.6
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 006912 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (626)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (626)
.+.+..+..++.+.|+.++..++.++..+.+..+..+.. ..+..+++.++..+.+.+.++...|++|+..++.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~-------~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe 104 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRM-------MVLERHLDVFINALSQENEKVTIKALRALGYLVK 104 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHH-------HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccH-------HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 557788889999999999999999999999998765542 4578999999999999999999999999999998
Q ss_pred ccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHh
Q 006912 210 LMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (626)
Q Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l 289 (626)
..|-.- +.+..+...+......+++-.+..+.+.+..+ .+- ...+.+..++.+.+.+.+.+++..++.++.++
T Consensus 105 ~vpL~~-~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl---kv~---~~~~~V~~~l~sLl~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 105 DVPMGS-KTFLKAAKTLVSLLESPDDMMRIETIDVLSKL---QPL---EDSKLVRTYINELVVSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp TCCBCH-HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC---CBS---CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCCCCH-HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC---Ccc---cchHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 876322 22334577777777888888999999999888 111 12245667777777888999999999998888
Q ss_pred hcc
Q 006912 290 FEA 292 (626)
Q Consensus 290 ~~~ 292 (626)
+..
T Consensus 178 a~~ 180 (265)
T 3b2a_A 178 LNS 180 (265)
T ss_dssp GGG
T ss_pred hcc
Confidence 765
No 91
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.7e-06 Score=81.99 Aligned_cols=180 Identities=13% Similarity=0.090 Sum_probs=137.5
Q ss_pred cccccHHHHHHHHHHHHHhhcCc-----c---hHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccc------h
Q 006912 362 VNVWNLRKCSAAALDVLSNVFGD-----E---ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG------L 427 (626)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~-----~---~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~------~ 427 (626)
+..|..|..|...+..+....+. . .+..+.+.+.+.+.+.+ ..+...++.++..++..+... .
T Consensus 20 sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN---~~v~~~al~~l~~~~~~~~~~~~~~~~~ 96 (278)
T 4ffb_C 20 YKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN---VVAQEQAIVALNSLIDAFASSSLKNAHN 96 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS---HHHHHHHHHHHHHHHTTCC---CCHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHhhhhhcccchh
Confidence 55799999999888776654422 1 13345677888888888 999999999999998866421 2
Q ss_pred hhhHHHHHHHHhhh-cCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 006912 428 YPHLSEIVAFLIPL-LDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (626)
Q Consensus 428 ~~~l~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l 506 (626)
..+...++|.++.. +.|..+.+|..+..++-.+++... ....+++.+...+++.+|.++..++..|..+
T Consensus 97 ~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~----------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 97 ITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT----------SITQSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS----------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 34566788888765 789999999999998877776432 1244567777888999999999999999999
Q ss_pred HHHhcccc---cchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc
Q 006912 507 EEEAAEEL---APRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (626)
Q Consensus 507 ~~~~~~~~---~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~ 554 (626)
++.+|... .+.++.+++.+..++.+.+..++..+..+++.+-..+|..
T Consensus 167 l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred HHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 99987543 4567888889999999999999999999999998877753
No 92
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.55 E-value=8.9e-06 Score=74.32 Aligned_cols=205 Identities=10% Similarity=0.050 Sum_probs=148.5
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCc
Q 006912 393 VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN 472 (626)
Q Consensus 393 ~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 472 (626)
.+...+-+.+ |+.|.+|+..+....+...+.+...++-+++.+.-.+.|+|+.|-..++..+..+...+... ...
T Consensus 50 ~~~~~lfs~d---~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~--~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKD---FKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT--ETP 124 (266)
T ss_dssp HHHHHHTCSC---HHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred HHHHHhcCCC---HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc--ccc
Confidence 3555566777 99999999999887776655555566667777766777999999999999999988777642 112
Q ss_pred hhhh-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 006912 473 GREQ-FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (626)
Q Consensus 473 ~~~~-~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~ 551 (626)
..++ ...++|.++.-+.|+...||..+-..+..+.+.++. ..+.+.+...+...+++.+..++..++.+++..
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP------LKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 3333 578999999999999999999999999888765432 335666667777778888899999999999999
Q ss_pred ccccCChhhhhhhh---HHHHHHHhcCCCCCCcc-chHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Q 006912 552 GFELNQPVYLDILM---PPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQT 617 (626)
Q Consensus 552 ~~~~~~~~~~~~l~---~~l~~~~~~~~~~~~~~-~~~l~~~~~l~~~~g~~f~~~~~~i~~~l~~~l~~ 617 (626)
|... ...+ |.+.+.+. +.|... ..++.|+..+-+..|+.+..+++.+=+.-.+.+++
T Consensus 199 G~~~------~~~l~~~~~ia~ll~---D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~e 259 (266)
T 2of3_A 199 GISP------LKSLSVEKTVAPFVG---DKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEE 259 (266)
T ss_dssp CSGG------GGGGCHHHHHGGGGG---CSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHH
T ss_pred CCCc------cccccchHHHHHHHc---CCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHH
Confidence 8752 1234 54444433 234333 48899999999999998766665544444444443
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.54 E-value=2.4e-05 Score=68.08 Aligned_cols=222 Identities=14% Similarity=0.075 Sum_probs=153.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchh-hhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhH
Q 006912 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE-PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL 299 (626)
Q Consensus 221 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 299 (626)
..+..+..++.+.++.++..++.++..+.+..+..+. ..++.+++-++..+.+.++.+...|++++..+.+.....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~--- 109 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG--- 109 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC---
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC---
Confidence 4577888899999999999999999999998765544 355688888888999999999999999999998863222
Q ss_pred HhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHH
Q 006912 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (626)
Q Consensus 300 ~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~ 379 (626)
..-+..++..+...++. .++ -.+..++..++.+
T Consensus 110 ~~~y~Kl~~aL~dlik~-~~~---------------------------------------------il~~eaae~Lgkl- 142 (265)
T 3b2a_A 110 SKTFLKAAKTLVSLLES-PDD---------------------------------------------MMRIETIDVLSKL- 142 (265)
T ss_dssp HHHHHHHHHHHHHHTTS-CCH---------------------------------------------HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcC-CCc---------------------------------------------hHHHHHHHHhCcC-
Confidence 23344555555444441 111 1355577777766
Q ss_pred hhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHH
Q 006912 380 NVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSR 459 (626)
Q Consensus 380 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 459 (626)
-.-...+.++.++.+.+.+.+ .+++.+|+.++..++....+. ..+..++..+-..+++.++.++..|+.++-.
T Consensus 143 --kv~~~~~~V~~~l~sLl~Skd---~~vK~agl~~L~eia~~S~D~--~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ 215 (265)
T 3b2a_A 143 --QPLEDSKLVRTYINELVVSPD---LYTKVAGFCLFLNMLNSSADS--GHLTLILDEIPSLLQNDNEFIVELALDVLEK 215 (265)
T ss_dssp --CBSCCCHHHHHHHHHHHTCSS---HHHHHHHHHHHHHHGGGCSSC--CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHH
T ss_pred --CcccchHHHHHHHHHHHhCCC---hhHHHHHHHHHHHhhcccCCH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 222445688889999998888 999999999999999876431 3344456666667788899999999999888
Q ss_pred HHHHHhhhcCCCchhhhHHHHHHHHHHHh-ccCCHHHHHHHHHHH
Q 006912 460 FSKFIVQDIGHQNGREQFEKVLMGLLKRI-LDTNKRVQEAACSAF 503 (626)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~ll~~l~~~l-~d~~~~v~~~a~~al 503 (626)
+...-- .....+-+..+...+-... -...|.+|..|-...
T Consensus 216 ils~pi----~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 216 ALSFPL----LENVKIELLKISRIVDGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp HTTSCC----CSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred HHcCcc----cHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 875421 0122333333333333333 345677877765433
No 94
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.47 E-value=5.8e-06 Score=91.05 Aligned_cols=426 Identities=11% Similarity=0.049 Sum_probs=220.1
Q ss_pred CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH---HhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHh
Q 006912 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR---TAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQ 122 (626)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~---~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~ 122 (626)
+++++..++..+..++...+..+..-+.+++..+. +.+. +...+.++..+-.++.+.++.-...++++++.+.+
T Consensus 461 ~~~~~~~l~~~l~qe~~~~~~F~~~~v~l~k~lf~l~~rn~~---~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~ 537 (997)
T 1vsy_5 461 TREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLISSGFC---ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVC 537 (997)
T ss_dssp CHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTTTTC---CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHhhccccCccccchHHHHHHHHHHHhcccc---hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 47888877766654334444445555666666653 2333 23334455555556667788888899999999986
Q ss_pred hc--C-----cCchHHHHHHHHHHhc-cCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHh---c--
Q 006912 123 LG--G-----IAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF---F-- 189 (626)
Q Consensus 123 ~~--~-----~~~~~~ll~~l~~~l~-~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~---l-- 189 (626)
.. + ...|.-+.|.+.+.+. +-+++....=..++..++.. .++ .....++..+... +
T Consensus 538 gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~----~Dp-------rR~~~L~e~l~~~~~~l~~ 606 (997)
T 1vsy_5 538 GSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAV----VDL-------RRSKTFFCHFINADGMFDR 606 (997)
T ss_dssp CCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHH----SCG-------GGCHHHHHHHTCCCCCCCC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcC----CCh-------hhhHHHHHHHHHhhcccCC
Confidence 53 2 1357788999999998 44544333222223333322 211 1123344434221 0
Q ss_pred CCCC---hHHHHHHHHHHHHHHhc-cchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHH
Q 006912 190 QSPH---TSLRKLSLGSVNQFIML-MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFE 265 (626)
Q Consensus 190 ~~~~---~~vr~~al~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~ 265 (626)
++.+ ..-|...++.+..-..+ .+. . ..++..+. ++++...+|..+...|..+.......--+..+.+++
T Consensus 607 ~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~----~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~ 679 (997)
T 1vsy_5 607 ESDAATHQTSKIYMLRSILMSMEFRAPD-V----GKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLE 679 (997)
T ss_dssp CSSCCCCCCSSHHHHHHHHHHHTTSSCC-C----HHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhcccccc-H----HHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH
Confidence 1111 12334444433332333 222 2 23344444 677888899988888877765442100011122221
Q ss_pred H-----------------------------HHhhcc---C--C-----ChHH--HHHHHhHHHHhhccCCcchhHHhhhh
Q 006912 266 Y-----------------------------MLQVNK---D--T-----DDDV--ALEACEFWHSYFEAQLPHENLKEFLP 304 (626)
Q Consensus 266 ~-----------------------------~~~~~~---~--~-----~~~v--~~~a~~~l~~l~~~~~~~~~~~~~l~ 304 (626)
. +-.... . . +... ....+..+...... .....+.+++.
T Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~-~~~~~l~~~~~ 758 (997)
T 1vsy_5 680 AERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARG-PNKVLLVPYLV 758 (997)
T ss_dssp HHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSG-GGHHHHHHHHT
T ss_pred hhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcC-CCccchhhhhH
Confidence 1 111100 0 0 0000 01111111111111 01122333333
Q ss_pred h-hHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHH-HHHHHHHHHhhc
Q 006912 305 R-LVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC-SAAALDVLSNVF 382 (626)
Q Consensus 305 ~-li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-a~~~l~~l~~~~ 382 (626)
. ++|.++......++ ++ +... +..++..++...
T Consensus 759 ~~llP~ll~l~~~~d~---------------------------------------~e------L~~~~a~~~l~~ls~~~ 793 (997)
T 1vsy_5 759 DYVLPFLIGLVKHKDV---------------------------------------CA------LASLDPVRLYAGLGYMP 793 (997)
T ss_dssp TTTTTTTCTTSSCSHH---------------------------------------HH------HTTCCSHHHHHHTSSSC
T ss_pred HHHHHHHHHHhhcCcH---------------------------------------HH------HHhhHHHHHHHHHhcCC
Confidence 3 33333222111100 00 2222 445566665443
Q ss_pred -CcchHHhHHHHHHHhhc-CCCCCChhHHHHHHHHHHHHHccCccch-hhhHHHHHHHHhhhcCCCc-hHHHHHHHHHHH
Q 006912 383 -GDEILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLDDKF-PLIRSISCWTLS 458 (626)
Q Consensus 383 -~~~~~~~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~l~~~~~~~~-~~~l~~l~~~l~~~l~d~~-~~vr~~a~~~l~ 458 (626)
+.+.++.++..+.+... +++ | .|.+++..+..+.-.-.-.+ ......+...++..|.|++ ..||..|..+|+
T Consensus 794 ~~~~~~~~~l~~l~~~~~~s~s---W-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLs 869 (997)
T 1vsy_5 794 IRKNHVAAIVDYVCSSNVALSS---N-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILS 869 (997)
T ss_dssp CCHHHHHHHHHHSSCTTTTSCS---S-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCc---H-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 33556666666655554 345 9 99999888766544211011 1233568889999999999 999999999999
Q ss_pred HHHHHH-hhhcCCCchhhhHHHHHHHHHHHhcc------------CCHHHHHHHHHHHHHHHHHhcccc--cchHHHHHH
Q 006912 459 RFSKFI-VQDIGHQNGREQFEKVLMGLLKRILD------------TNKRVQEAACSAFATLEEEAAEEL--APRLEIILQ 523 (626)
Q Consensus 459 ~l~~~~-~~~~~~~~~~~~~~~ll~~l~~~l~d------------~~~~v~~~a~~al~~l~~~~~~~~--~~~l~~i~~ 523 (626)
-+.... . ......++..+.+.+.. .+...|-+|.-+|+.++...+-.+ .+++|.++.
T Consensus 870 gll~c~~~--------~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~ 941 (997)
T 1vsy_5 870 DIVHNWKE--------EQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLS 941 (997)
T ss_dssp HHHHSCCS--------HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHH
T ss_pred HHHHcCCc--------hhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHH
Confidence 886533 1 01122333333333311 011456788999999999988776 689999988
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 006912 524 HLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (626)
Q Consensus 524 ~l~~~l~~~~~~~~~~~~~~l~~i~~~~ 551 (626)
.|.....+++ .+...+-++++.+-+..
T Consensus 942 ~La~~~~~~~-~i~~tvk~tlseFkrTH 968 (997)
T 1vsy_5 942 NLSSWARTSG-MTGNAAKNTISEFKKVR 968 (997)
T ss_dssp HHHTTSSSCS-SHHHHTHHHHHHHHHHT
T ss_pred HHHHHhCCCC-chHHHHHHHHHHHHhcc
Confidence 7766555532 34456666777765544
No 95
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.38 E-value=3.8e-06 Score=79.50 Aligned_cols=214 Identities=10% Similarity=0.084 Sum_probs=141.1
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHHHHccCccc-----hhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhc
Q 006912 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-----LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI 468 (626)
Q Consensus 394 l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~-----~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 468 (626)
+.+.+.+.+ |+.|..|+..+..+....... ....+..+.+.+...+.|.|..|...++.++..++..+....
T Consensus 14 l~e~l~sk~---WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 14 LEERLTYKL---WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp HHHHTTCSS---HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHhcccCc---HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 557788888 999999999998877654321 111233345666778899999999999999999887543210
Q ss_pred C-CCchhhhHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 006912 469 G-HQNGREQFEKVLMGLLK-RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (626)
Q Consensus 469 ~-~~~~~~~~~~ll~~l~~-~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~ 546 (626)
+ ......+...+++.++. ++.|..+.++..|..++..+++.+.. ...+++.+...+...+.+++..++..|..
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 0 00123456778888885 47888899999999999998875432 24455666666777778888889999999
Q ss_pred HHHHhccccCCh-hhhhhhhHHHHHHHhcCCCCCCcc-chHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHH
Q 006912 547 LADAVGFELNQP-VYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGF----TQFAQPVFQRCINIIQTQ 618 (626)
Q Consensus 547 i~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~-~~~l~~~~~l~~~~g~~f----~~~~~~i~~~l~~~l~~~ 618 (626)
++...|.....+ +.++.+++.+...+.. .++.. ..++++++.+-+.+|..+ .++++.+=|..++-|+..
T Consensus 166 ~l~~fg~~~~~~k~~l~~i~~~l~k~l~d---~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~ 240 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLPELLKHVPQLAGH---GDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKL 240 (278)
T ss_dssp HHHHHTTTTCCHHHHHHHHGGGHHHHHTC---SSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHH
T ss_pred HHHHhCCCcCCchhHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHH
Confidence 998887654321 2455666666666653 34443 488899999988888643 235444445555555443
No 96
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.27 E-value=1.3e-07 Score=78.23 Aligned_cols=121 Identities=14% Similarity=0.148 Sum_probs=82.0
Q ss_pred HHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhh
Q 006912 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ 466 (626)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 466 (626)
.+.-.+.+...+++++ +.+|..|+.+++.+... . ++.++..+.|+++.||..|++++|++..
T Consensus 10 ~~~~~~~l~~~L~~~~---~~vR~~A~~~L~~~~~~-------~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~---- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADEN---KWVRRDVSTALSRMGDE-------A----FEPLLESLSNEDWRIRGAAAWIIGNFQD---- 71 (131)
T ss_dssp -----------CCSSC---CCSSSSCCSSTTSCSST-------T----HHHHHHGGGCSCHHHHHHHHHHHGGGCS----
T ss_pred ccccHHHHHHHhcCCC---HHHHHHHHHHHHHhCch-------H----HHHHHHHHcCCCHHHHHHHHHHHHhcCC----
Confidence 3455677788888888 89999988887755321 1 3777788889999999999999887752
Q ss_pred hcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 006912 467 DIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (626)
Q Consensus 467 ~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~ 546 (626)
...++.+.+.+.|+++.||..|+.+|+.+-. +..++.|...+.+.+..++..+..+|+.
T Consensus 72 -----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2245667777788899999999999998631 3456667777776666777777777653
No 97
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.22 E-value=2.3e-05 Score=77.10 Aligned_cols=201 Identities=12% Similarity=0.117 Sum_probs=128.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhc------cCChhHHHHHHHhH-----hhhhhC-----CcHHHHHHHHHHHHHHHhhcC
Q 006912 62 GKSVEIRQAAGLLLKNNLRTAYK------SMSPSNQQYIKSEL-----LPCLGA-----ADRHIRSTVGTIVSVVVQLGG 125 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~~~~~------~l~~~~~~~i~~~L-----~~~l~~-----~~~~vr~~~~~~l~~i~~~~~ 125 (626)
+..=++|+-||..|+..++.+-. ..+. .+--.+ ++.++| .-..||.++|++++.+ ...+
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~----DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp 259 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS----KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLI 259 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCT----THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTS
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccH----HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCC
Confidence 44558999999999998876531 1222 222222 223333 2568999999999999 6654
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHH
Q 006912 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (626)
Q Consensus 126 ~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~ 205 (626)
+. -.++..+...+..+.|.+|++|+..|..+ .+.+. . ++.+++.++.+|+|.+.+||..|..+|.
T Consensus 260 ~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~--------~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLi 324 (800)
T 3oc3_A 260 GP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVE--------D-KDGLCRKLVSLLSSPDEDIKLLSAELLC 324 (800)
T ss_dssp CS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCC--------C-HHHHHHHHHHHTTCSSHHHHHHHHHHHT
T ss_pred hh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHH--------H-HHHHHHHHHhhcCCcccHHHHHHHHHhh
Confidence 44 23444444555778999999999999887 22111 1 6889999999999999999999999998
Q ss_pred HHHhccchHHHHhHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHH
Q 006912 206 QFIMLMPSALFVSMDQYLQGLFLLSNDPS--AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEAC 283 (626)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~ 283 (626)
-++ .|.. ++.++..++..+.+-+ ..--..++..|..++...+..-.. +.++|-++..+.+.-.+||.+++
T Consensus 325 PIA--~p~~----l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~d--p~LVPRL~PFLRHtITSVR~AVL 396 (800)
T 3oc3_A 325 HFP--ITDS----LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIP--PERLKDIFPCFTSPVPEVRTSIL 396 (800)
T ss_dssp TSC--CSST----HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCC--SGGGGGTGGGGTCSSHHHHHHHH
T ss_pred hhc--chhh----HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccC--hHHHHHHHhhhcCCcHHHHHHHH
Confidence 777 3333 3344555555443211 112234555556655544321111 24555556667777777888887
Q ss_pred hHHHHhh
Q 006912 284 EFWHSYF 290 (626)
Q Consensus 284 ~~l~~l~ 290 (626)
+.+.++.
T Consensus 397 ~TL~tfL 403 (800)
T 3oc3_A 397 NMVKNLS 403 (800)
T ss_dssp HHTTTCC
T ss_pred HHHHHHH
Confidence 7766654
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.21 E-value=3.1e-05 Score=76.29 Aligned_cols=245 Identities=13% Similarity=0.116 Sum_probs=155.5
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHh-----cC----CC-ChHHHHHHH
Q 006912 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF-----FQ----SP-HTSLRKLSL 201 (626)
Q Consensus 132 ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~-----l~----~~-~~~vr~~al 201 (626)
+...|..-+-++.|.+|++|..+|+++++..+...... ... + . .+.-.++-. +. |+ -.-||..+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-~~~--N-~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaA 249 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-IRV--D-S-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAA 249 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-CCC--C-T-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-ccc--c-H-HHHHHHHHHHHhccccccccCeeeeehHHHHH
Confidence 77888888889999999999999999999876422111 000 1 1 333222222 22 22 246999999
Q ss_pred HHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHH
Q 006912 202 GSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALE 281 (626)
Q Consensus 202 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~ 281 (626)
++|+.+ ..+|+.. .++..++..+..+.+++|..++-.|-.+ .+.+.. ++.+++.++.++.|.+++||..
T Consensus 250 QtLGaL-~hLp~e~-----~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAV 318 (800)
T 3oc3_A 250 YLLSRI-YPLIGPN-----DIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPDEDIKLL 318 (800)
T ss_dssp HHHHHH-TTTSCSC-----CHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHH-HhCChhH-----HHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHhhcCCcccHHHHH
Confidence 999999 7777661 2344555566778899999998888877 333322 7889999999999999999999
Q ss_pred HHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccc
Q 006912 282 ACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361 (626)
Q Consensus 282 a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (626)
|.+.|.-++.. ..+..++..+-..+..- |+.
T Consensus 319 AAetLiPIA~p--------~~l~~LL~iLWd~L~~L----------------------------------DDL------- 349 (800)
T 3oc3_A 319 SAELLCHFPIT--------DSLDLVLEKCWKNIESE----------------------------------ELI------- 349 (800)
T ss_dssp HHHHHTTSCCS--------STHHHHHHHHHHHHHTC----------------------------------CSC-------
T ss_pred HHHHhhhhcch--------hhHHHHHHHHHHHhhhh----------------------------------ccc-------
Confidence 99998888721 22334444432222211 000
Q ss_pred cccccHHHHHHHHHHHHHhhcCc-chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhh
Q 006912 362 VNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP 440 (626)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~ 440 (626)
...-....+.|..+...-.. ...+.++|.+-.++.++- ..+|.+++.++..+. ...+++.+.+
T Consensus 350 ---SASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtI---TSVR~AVL~TL~tfL----------~~~~LRLIFQ 413 (800)
T 3oc3_A 350 ---SVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPV---PEVRTSILNMVKNLS----------EESIDFLVAE 413 (800)
T ss_dssp ---CTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSS---HHHHHHHHHHTTTCC----------CHHHHHHHHH
T ss_pred ---chhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCc---HHHHHHHHHHHHHHH----------hhhHHHHHHH
Confidence 01122334455554443322 223477777888888887 999999999987665 1223443333
Q ss_pred -hcCCCchHHHHHHHHHH
Q 006912 441 -LLDDKFPLIRSISCWTL 457 (626)
Q Consensus 441 -~l~d~~~~vr~~a~~~l 457 (626)
.+-.+++.|+..+..+-
T Consensus 414 NILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 414 VVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp HHHHCSCHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHH
Confidence 23467788888776665
No 99
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.19 E-value=0.0047 Score=63.29 Aligned_cols=203 Identities=10% Similarity=0.064 Sum_probs=131.8
Q ss_pred HHHHHHHhHhhhhh-CCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhcc--CChhHHhHHHHHHHHHhhhchhcc
Q 006912 90 NQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS--NDINHMEGAMDALSKICEDIPQVL 166 (626)
Q Consensus 90 ~~~~i~~~L~~~l~-~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~--~~~~~r~~~l~~l~~l~~~~~~~~ 166 (626)
....-.+.|...+. ..-..=|+.|...+..+++.+....-..-++.++..++. .|.+....++.+|..++...++.-
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE 97 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence 33445556666664 344555888888888887654222223336777777764 366777888888876655433210
Q ss_pred c----cC-CCC--C-c-cc--hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHH---HHHHHHHHhcCC
Q 006912 167 D----SD-VPG--L-A-EC--PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD---QYLQGLFLLSND 232 (626)
Q Consensus 167 ~----~~-~~~--~-~-~~--~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~---~~l~~l~~~~~~ 232 (626)
. +. ... + + +. .-.+-++.++..+++.+..+|..++++|..++..-|....+.+- .-++.|+.++.|
T Consensus 98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d 177 (651)
T 3grl_A 98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD 177 (651)
T ss_dssp ----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC
T ss_pred ccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC
Confidence 0 00 000 0 0 00 01445778899999999999999999999999887776555443 347889999999
Q ss_pred CCHHHHHHHHHHHHHHHhhCccc-----hhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 233 PSAEVRKLVCAAFNLLIEVRPSF-----LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 233 ~~~~~~~~~~~~l~~l~~~~~~~-----~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
+.+.+|.+++..|..+....++. |+.-++.++..+-.--.-....+...|+.++..+.+.
T Consensus 178 ~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 178 SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc
Confidence 99999999999999999887753 3333444554443322223456788889999998886
No 100
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.14 E-value=3.3e-06 Score=69.57 Aligned_cols=87 Identities=24% Similarity=0.313 Sum_probs=71.4
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCC
Q 006912 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (626)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (626)
++.+.+.+++++ |.+|..++.+++.+.. +..++.+...+.|+++.||..|+++++++..
T Consensus 44 ~~~L~~~L~d~~---~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------- 102 (131)
T 1te4_A 44 FEPLLESLSNED---WRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------- 102 (131)
T ss_dssp HHHHHHGGGCSC---HHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------
Confidence 377778888888 9999999999988753 2346777778889999999999999998752
Q ss_pred CchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 006912 471 QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFAT 505 (626)
Q Consensus 471 ~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~ 505 (626)
...++.+.+.++|+++.||..|+.+|++
T Consensus 103 -------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 -------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2346777888889999999999999875
No 101
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.92 E-value=0.0068 Score=62.16 Aligned_cols=274 Identities=14% Similarity=0.048 Sum_probs=158.9
Q ss_pred CHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHHhc-CCCh-----HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 006912 10 QEQGFNEICRLLEQ-QISPSSTADKSQIWQQLQQYSQ-FPDF-----NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA 82 (626)
Q Consensus 10 ~~~~~~~l~~~l~~-~~s~d~~~~r~~a~~~L~~~~~-~p~~-----~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~ 82 (626)
+++...+-++.|-. +.++.--+-|++|-..|+.+.+ .|.. ...|+.+|..+ ..+.++-..+.-.|.+.+...
T Consensus 15 ~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d-~~D~e~v~~~LetL~~l~~~~ 93 (651)
T 3grl_A 15 PQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTD-RSDSEIIGYALDTLYNIISND 93 (651)
T ss_dssp ---CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcc-cccHHHHHHHHHHHHHHhCCC
Confidence 34444443333333 3333333499999999999865 5543 56788888764 455565555666665544211
Q ss_pred hc-c---C----Chh----------HHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchH------HHHHHHHH
Q 006912 83 YK-S---M----SPS----------NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWL------ELLQALVT 138 (626)
Q Consensus 83 ~~-~---l----~~~----------~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~------~ll~~l~~ 138 (626)
-. . . .++ .+..-...|+..|.+.+..+|..+.+++..++...+...|. .-++.|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp --------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence 00 0 0 000 01122346777888899999999999999999776444453 44688999
Q ss_pred HhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCC----ChHHHHHHHHHHHHHHhccchH
Q 006912 139 CLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP----HTSLRKLSLGSVNQFIMLMPSA 214 (626)
Q Consensus 139 ~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~----~~~vr~~al~~l~~~~~~~~~~ 214 (626)
.+.++...+|.-++..|..+.+..++.-. + -.....++.++..+... ...+..-++.++..+++..+..
T Consensus 174 lL~d~rE~iRneallLL~~Lt~~n~~iQk-----l--VAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN 246 (651)
T 3grl_A 174 LLADSREVIRNDGVLLLQALTRSNGAIQK-----I--VAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN 246 (651)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTTCHHHHH-----H--HHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhCchHHHHHHHHHHHHHHhcCCHHHHH-----H--HHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH
Confidence 99998889999999999999987665310 0 11345677777777653 3367778888888888775421
Q ss_pred HHHhHH--HHHHHHHHhcCCCCH------HHHHH---HHHHHHHHHhhCccc--hhh---hH--HHHHHHHHhhcc--CC
Q 006912 215 LFVSMD--QYLQGLFLLSNDPSA------EVRKL---VCAAFNLLIEVRPSF--LEP---HL--RNLFEYMLQVNK--DT 274 (626)
Q Consensus 215 ~~~~~~--~~l~~l~~~~~~~~~------~~~~~---~~~~l~~l~~~~~~~--~~~---~l--~~l~~~~~~~~~--~~ 274 (626)
...+. ..++.+..++..+++ ..... +..++..++...... ... .+ ..++..+++... ..
T Consensus 247 -Q~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~ 325 (651)
T 3grl_A 247 -QNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGV 325 (651)
T ss_dssp -HHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSC
T ss_pred -HHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCC
Confidence 11111 234555555542211 12222 445555555442210 000 00 123344444432 33
Q ss_pred ChHHHHHHHhHHHHhhcc
Q 006912 275 DDDVALEACEFWHSYFEA 292 (626)
Q Consensus 275 ~~~v~~~a~~~l~~l~~~ 292 (626)
...++..|+..+..+++.
T Consensus 326 p~~i~~~Al~tla~~irg 343 (651)
T 3grl_A 326 PADILTETINTVSEVIRG 343 (651)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 577889999888887765
No 102
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.88 E-value=0.00028 Score=62.21 Aligned_cols=145 Identities=17% Similarity=0.155 Sum_probs=111.1
Q ss_pred HHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHH-HhccCChhHHhHHHHHHHHHhh-hchhcccc
Q 006912 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVT-CLDSNDINHMEGAMDALSKICE-DIPQVLDS 168 (626)
Q Consensus 91 ~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~-~l~~~~~~~r~~~l~~l~~l~~-~~~~~~~~ 168 (626)
.+.+......+.+++...+|-.++.+++.. . ..++.++.+.. ...++++.+|+.+..+++.++. ..+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p----- 137 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY----- 137 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH-----
Confidence 344555555556788889999999987766 2 23788999998 6678899999999999998886 333
Q ss_pred CCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006912 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (626)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l 248 (626)
...++.+..-..|++..||..|.+.+.-+... | .+...-..+++.+-.+..|++..||+.+...|..+
T Consensus 138 ----------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~ 205 (240)
T 3l9t_A 138 ----------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDI 205 (240)
T ss_dssp ----------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 22456777888999999999999887554432 2 22333445688888888999999999999999999
Q ss_pred HhhCccchhh
Q 006912 249 IEVRPSFLEP 258 (626)
Q Consensus 249 ~~~~~~~~~~ 258 (626)
.+..|+.+..
T Consensus 206 SK~~Pd~V~~ 215 (240)
T 3l9t_A 206 SKKFPDLVKI 215 (240)
T ss_dssp HTTCHHHHHH
T ss_pred hhhCHHHHHH
Confidence 9999987654
No 103
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.74 E-value=0.04 Score=59.00 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=91.2
Q ss_pred HHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHH-HHHHhcCCCChHHHHHHHHHHHHHHh
Q 006912 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP-RLLQFFQSPHTSLRKLSLGSVNQFIM 209 (626)
Q Consensus 131 ~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~-~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (626)
.++|.+ +.++++++..|..|+.+|..++......-. -....++. .+...+.|++..||.+|..+|..++.
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l--------~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKL--------LLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHH--------HHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHH--------HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 345554 458999999999999999999974322100 11234444 45677999999999999999999886
Q ss_pred ccchHHHHhHH--HHHHHHHHhcC--------------CCC-------HHHHHHHHHHHHHHHhhCccchhh-----hHH
Q 006912 210 LMPSALFVSMD--QYLQGLFLLSN--------------DPS-------AEVRKLVCAAFNLLIEVRPSFLEP-----HLR 261 (626)
Q Consensus 210 ~~~~~~~~~~~--~~l~~l~~~~~--------------~~~-------~~~~~~~~~~l~~l~~~~~~~~~~-----~l~ 261 (626)
..+.....++- ++++.|..++. ... .++...++.+|..+++...+.+.. .++
T Consensus 106 ~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~ 185 (684)
T 4gmo_A 106 EEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTIL 185 (684)
T ss_dssp HSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHH
T ss_pred hcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHH
Confidence 54433332211 23333333211 011 123345666777777766554432 223
Q ss_pred HHHHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 262 NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 262 ~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
.++..+... .....+++..+++++..+++.
T Consensus 186 ~l~~~L~~~-~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 186 RLLFRLISA-DIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHHHHHHH-CCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc-CCCcHHHHHHHHHHHHHHhcc
Confidence 333333222 223467899999999999886
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.72 E-value=0.06 Score=57.63 Aligned_cols=144 Identities=11% Similarity=0.022 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhHHHH-HHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCc---------CchHH
Q 006912 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY-IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI---------AGWLE 131 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~-i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~---------~~~~~ 131 (626)
+.++..|..|+..|.+.+.+.-. ..--.++. +...+.++|.+++..||..++.++++++...+. +.|+.
T Consensus 45 S~~~~~r~~A~~al~~l~~~~~~-~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~ 123 (684)
T 4gmo_A 45 SPDAKSRTTAAGAIANIVQDAKC-RKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTA 123 (684)
T ss_dssp SSCCSHHHHHHHHHHHHTTSHHH-HHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCcHH-HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHH
Confidence 77899999999999987632100 00111122 223344567889999999999999999865432 34444
Q ss_pred HHHHHHHHh---ccC-------C-------hhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCC---
Q 006912 132 LLQALVTCL---DSN-------D-------INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--- 191 (626)
Q Consensus 132 ll~~l~~~l---~~~-------~-------~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--- 191 (626)
+...+.+.. ... . +.+....+.+|..+++.....+.. -.....++.++..+.+
T Consensus 124 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~-------v~~~~~l~~l~~~L~~~~~ 196 (684)
T 4gmo_A 124 IEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEA-------VATKQTILRLLFRLISADI 196 (684)
T ss_dssp HHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-------HHTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH-------HHhcccHHHHHHHHHhcCC
Confidence 444433322 111 0 112234556666666655443211 0113556666666643
Q ss_pred CChHHHHHHHHHHHHHHhccch
Q 006912 192 PHTSLRKLSLGSVNQFIMLMPS 213 (626)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~ 213 (626)
...+++..|+.||..+.+..++
T Consensus 197 ~~~~v~~~a~~~L~~ls~dn~~ 218 (684)
T 4gmo_A 197 APQDIYEEAISCLTTLSEDNLK 218 (684)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHH
T ss_pred CcHHHHHHHHHHHHHHhccCHH
Confidence 3468999999999999877554
No 105
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.59 E-value=0.003 Score=56.86 Aligned_cols=174 Identities=10% Similarity=0.085 Sum_probs=112.1
Q ss_pred HHHHHHHHhccCCh--hHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 006912 132 LLQALVTCLDSNDI--NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (626)
Q Consensus 132 ll~~l~~~l~~~~~--~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (626)
.+|.+.+.+.++++ .++..+..++..++...++.-. . -.-...+|.|++.|.+++..++..|+.+|..+..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~-~------I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARK-R------VNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHH-H------HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHH-H------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 36888899998877 7888888888888865443211 0 0124568999999999999999999999999986
Q ss_pred ccchHHHHhH--HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhc-------c-------
Q 006912 210 LMPSALFVSM--DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN-------K------- 272 (626)
Q Consensus 210 ~~~~~~~~~~--~~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~-------~------- 272 (626)
..++. ...+ ...++.|++++. .++.++++.+..+|..+.....-.. .....-++.+...+ .
T Consensus 82 ~~~~n-k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~ 159 (233)
T 3tt9_A 82 EDNDN-KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYPKA 159 (233)
T ss_dssp TCHHH-HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCC
T ss_pred CCHHH-HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccccc
Confidence 43321 1111 145788888876 4688999999999988875432110 11112233333221 1
Q ss_pred --CCChHHHHHHHhHHHHhhccC-CcchhHHhhhhhhHHHHhhhcc
Q 006912 273 --DTDDDVALEACEFWHSYFEAQ-LPHENLKEFLPRLVPVLLSNMI 315 (626)
Q Consensus 273 --~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~l~~li~~l~~~l~ 315 (626)
..+.+++..|..+|..++... .....++. ...+++.++..+.
T Consensus 160 ~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~-~~Gli~~Lv~~l~ 204 (233)
T 3tt9_A 160 NGLLDFDIFYNVTGCLRNMSSAGADGRKAMRR-CDGLIDSLVHYVR 204 (233)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHT-STTHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCCcHHHHHHHHH
Confidence 135689999999999997642 22333332 2346666665554
No 106
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.47 E-value=0.0069 Score=53.45 Aligned_cols=172 Identities=10% Similarity=0.100 Sum_probs=113.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHH
Q 006912 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (626)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~ 95 (626)
++.+-+..+-+.-.. +-+.|...+..+. .+.+..+..-|.. +..+++|..|+-+|... . -.+ .+.
T Consensus 41 ~~~~~~~~~~~gf~~-~~~~a~~~~~~~~--~~~~~~la~~L~~--~~~deVR~~Av~lLg~~--~----~~~----~~L 105 (240)
T 3l9t_A 41 RLEKDFSLIEHGFKE-EEQRALTDYKSND--GEYIKKLAFLAYQ--SDVYQVRMYAVFLFGYL--S----KDK----EIL 105 (240)
T ss_dssp HHHHHHTC-----CH-HHHHHHHHHHHSC--HHHHHHHHHHHHT--CSSHHHHHHHHHHHHHT--T----TSH----HHH
T ss_pred HHHHHHHHhhcccHH-HHHHHHHHHHhCC--HHHHHHHHHHHHh--CcchHHHHHHHHHHHhc--c----CcH----HHH
Confidence 333444444445555 5666665555544 2233345555544 66689999998877644 1 112 344
Q ss_pred HhHhh-hhhCCcHHHHHHHHHHHHHHHh-hcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCC
Q 006912 96 SELLP-CLGAADRHIRSTVGTIVSVVVQ-LGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (626)
Q Consensus 96 ~~L~~-~l~~~~~~vr~~~~~~l~~i~~-~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~ 173 (626)
..+.. .-.++...||..++.+++.++. .++ + ..++.+.....+++..+|..+...+...+.. +. .
T Consensus 106 ~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p-e---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~-~------- 172 (240)
T 3l9t_A 106 IFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY-K---KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PY-F------- 172 (240)
T ss_dssp HHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT-T---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TT-T-------
T ss_pred HHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH-H---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-ch-h-------
Confidence 44444 3358899999999999999997 443 3 2667888999999999999998887653332 11 1
Q ss_pred ccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHH
Q 006912 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF 216 (626)
Q Consensus 174 ~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~ 216 (626)
......++|.+-....|++.-||+++-..|..+....|+...
T Consensus 173 -k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~ 214 (240)
T 3l9t_A 173 -KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVK 214 (240)
T ss_dssp -TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHH
Confidence 133467888888888999999999999999999887765544
No 107
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.42 E-value=0.019 Score=51.66 Aligned_cols=211 Identities=14% Similarity=0.076 Sum_probs=125.0
Q ss_pred hhhHHHHHHhcCCCCh--HHHHHHHHHHHHHHhccchHHHHhH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccc
Q 006912 179 NIFLPRLLQFFQSPHT--SLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (626)
Q Consensus 179 ~~il~~l~~~l~~~~~--~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 255 (626)
..-+|.+++.|+++++ .++..|..++..+....++.-.... ...++.|+.++..++++++..++.+|..+....++.
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 4457889999999887 8888888899887754332211111 145799999999999999999999999998754432
Q ss_pred hhhhH-HHHHHHHHhhcc-CCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCC
Q 006912 256 LEPHL-RNLFEYMLQVNK-DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLP 333 (626)
Q Consensus 256 ~~~~l-~~l~~~~~~~~~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~ 333 (626)
-.... ..-++.++..+. ..+.+++..+...|..++........ +...-+|.++..+...... |.+.+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~---i~~~~i~~Lv~ll~~p~sG---~~~~~----- 155 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL---MITEALLTLTENIIIPFSG---WPEGD----- 155 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHH---HHHHHHHHHCCCCCHHHHC---CCGGG-----
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHH---HHhccHHHHHHHHhccccC---Ccccc-----
Confidence 11111 134556666665 46788999998888888765322222 2233455555433210000 00000
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---------chHHhHHHHHHHhhcCCCCC
Q 006912 334 DRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---------EILPTLMPVIQAKLSASGDE 404 (626)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---------~~~~~l~~~l~~~l~~~~~~ 404 (626)
+-+ + . ....-.++..|..+|..++..-.+ -.++.++.++.....+.+ .
T Consensus 156 ----~~~-----------~-~------~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~-~ 212 (233)
T 3tt9_A 156 ----YPK-----------A-N------GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQ-P 212 (233)
T ss_dssp ----CCC-----------C-C------TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTC-T
T ss_pred ----ccc-----------c-c------ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhccc-c
Confidence 000 0 0 001124778888999888763211 134555555555544322 1
Q ss_pred ChhHHHHHHHHHHHHHccC
Q 006912 405 AWKDREAAVLALGAIAEGC 423 (626)
Q Consensus 405 ~~~~r~aal~~l~~l~~~~ 423 (626)
+.+.++-++.+|..++..+
T Consensus 213 ~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 213 DDKATENCVCILHNLSYQL 231 (233)
T ss_dssp TCHHHHHHHHHHHHHCCCC
T ss_pred hhHHHHHHHHHHHHHHhhh
Confidence 1577888888888887653
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.40 E-value=0.12 Score=50.70 Aligned_cols=158 Identities=14% Similarity=0.101 Sum_probs=106.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHH
Q 006912 54 AFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELL 133 (626)
Q Consensus 54 ~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll 133 (626)
..||... ..++..+..|++++.+. |.. -|+..+.-.+.++++..+++..||..+.+.+..+++. ...+.+.
T Consensus 32 ~~Il~~~-kg~~k~K~LaaQ~I~kf----fk~-FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kia 102 (507)
T 3u0r_A 32 QVILDGV-KGGTKEKRLAAQFIPKF----FKH-FPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVA 102 (507)
T ss_dssp HHHHHGG-GSCHHHHHHHHHHHHHH----GGG-CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHH
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHH----Hhh-ChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHH
Confidence 3345433 44689999999998644 443 3446666667888888999999999999998888875 4578899
Q ss_pred HHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccch
Q 006912 134 QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS 213 (626)
Q Consensus 134 ~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~ 213 (626)
..|.|+++.+++..+...=++|..+.+.-+. ..+..++..+..+++.+|..+++-+..-+..++.
T Consensus 103 DvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk---------------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~ 167 (507)
T 3u0r_A 103 DILTQLLQTDDSAEFNLVNNALLSIFKMDAK---------------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPD 167 (507)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH---------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcChH---------------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcch
Confidence 9999999998887777766777777765543 2233333333335789999999888776655543
Q ss_pred H-HHHhHHH-HHHHHHHhcCCCCH
Q 006912 214 A-LFVSMDQ-YLQGLFLLSNDPSA 235 (626)
Q Consensus 214 ~-~~~~~~~-~l~~l~~~~~~~~~ 235 (626)
. +...+.. +...+.+.+.|-..
T Consensus 168 ~~l~~E~E~~i~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 168 EVLTKEVEELILTESKKVLEDVTG 191 (507)
T ss_dssp TTSCHHHHHHHHHHHHHHTTSCCH
T ss_pred hhccHHHHHHHHHHHHHHhccccH
Confidence 2 2222332 24445556665443
No 109
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.39 E-value=0.12 Score=50.66 Aligned_cols=282 Identities=14% Similarity=0.097 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH-hcCCCh----HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccC
Q 006912 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQY-SQFPDF----NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM 86 (626)
Q Consensus 12 ~~~~~l~~~l~~~~s~d~~~~r~~a~~~L~~~-~~~p~~----~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l 86 (626)
+....-..+|.+.-. +.. .++-|.+++-.| +..|+. +..++.++. +.+..||..|.--|-.. .
T Consensus 26 ~~~~~y~~Il~~~kg-~~k-~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcE---Ded~~IR~qaik~Lp~~-------c 93 (507)
T 3u0r_A 26 QHKDAYQVILDGVKG-GTK-EKRLAAQFIPKFFKHFPELADSAINAQLDLCE---DEDVSIRRQAIKELPQF-------A 93 (507)
T ss_dssp GGHHHHHHHHHGGGS-CHH-HHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHT---CSSHHHHHHHHHHGGGG-------C
T ss_pred ccHHHHHHHHHhcCC-CHH-HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh---cccHHHHHHHHHhhHHH-------h
Confidence 344555666666544 466 788888898886 558874 444555443 77888998775444211 1
Q ss_pred ChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhcc
Q 006912 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (626)
Q Consensus 87 ~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~ 166 (626)
..+....+-..|.++|+.+++.-+..+-.++..+.+.++......++..+.. ++..+|+..+..|..=+...+..+
T Consensus 94 k~~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~~ 169 (507)
T 3u0r_A 94 TGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDEV 169 (507)
T ss_dssp CTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTTT
T ss_pred hhhhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc----cchHHHHHHHHHHHHHHhhcchhh
Confidence 1144566778889999988888888888899999998866655555555554 567899998888876666555433
Q ss_pred ccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHh------cCCCCHHHHHH
Q 006912 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLL------SNDPSAEVRKL 240 (626)
Q Consensus 167 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~~~~~ 240 (626)
.. +..-..+...+.+.++|.+..=-...+..|.++--. .. ......+++.+... +...+.+....
T Consensus 170 l~------~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~-~t--~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdR 240 (507)
T 3u0r_A 170 LT------KEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSL-QT--VSGRQQLVELVAEQADLEQTFNPSDPDCVDR 240 (507)
T ss_dssp SC------HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGG-SS--HHHHHHHHHHHHHHHTTTSCCCSSCHHHHHH
T ss_pred cc------HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccc-cC--chHHHHHHHHHHHHHhccCCCCCcCHHHHHH
Confidence 21 122244556677778776554333333333222111 11 11122334444443 22235565566
Q ss_pred HHHHHHHHHhhCc------cchhhhHHHHHHHHHhhccC-CChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhh
Q 006912 241 VCAAFNLLIEVRP------SFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (626)
Q Consensus 241 ~~~~l~~l~~~~~------~~~~~~l~~l~~~~~~~~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~ 313 (626)
.+.|+..-.-... .++.-+...++|.+-..... .+++.+...+..+..++..-...+.....++.+...++.+
T Consensus 241 lI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~y 320 (507)
T 3u0r_A 241 LLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEY 320 (507)
T ss_dssp HHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHH
Confidence 6666654432211 23333334444422222221 2223566677777777665333466677888888888888
Q ss_pred cccCc
Q 006912 314 MIYAD 318 (626)
Q Consensus 314 l~~~~ 318 (626)
|...+
T Consensus 321 mP~~p 325 (507)
T 3u0r_A 321 MPLPP 325 (507)
T ss_dssp SCCCC
T ss_pred CCCCc
Confidence 87654
No 110
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.35 E-value=0.022 Score=62.90 Aligned_cols=139 Identities=14% Similarity=0.013 Sum_probs=93.4
Q ss_pred ccccHHHHHHHHHHHHHh-hc---CcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccC-ccchhhhHHHHHHH
Q 006912 363 NVWNLRKCSAAALDVLSN-VF---GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-IKGLYPHLSEIVAF 437 (626)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~-~~---~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~-~~~~~~~l~~l~~~ 437 (626)
.+| .|..+...+..+.- .+ .......+...+..++.++.- .++|+.|..+|+.+..+. .. .....++..
T Consensus 814 ~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~--~EVRe~Aa~tLsgll~c~~~~---~~~~~li~~ 887 (997)
T 1vsy_5 814 SSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQF--VEVRVRAASILSDIVHNWKEE---QPLLSLIER 887 (997)
T ss_dssp CSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSC--HHHHHHHHHHHHHHHHSCCSH---HHHHHHHHH
T ss_pred CcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHHHHcCCch---hhHHHHHHH
Confidence 469 89888888765533 22 333345677777777776531 679999999999998765 31 122234454
Q ss_pred HhhhcCC------------CchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 006912 438 LIPLLDD------------KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFAT 505 (626)
Q Consensus 438 l~~~l~d------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~ 505 (626)
+...+.. .....|.+|+-.|+.+...++..+ ..++.+++++..|.....++.+ |+..+-++|+.
T Consensus 888 f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~v---P~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlse 963 (997)
T 1vsy_5 888 FAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVF---PLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISE 963 (997)
T ss_dssp HTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCS---SCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHH
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCC---CCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHH
Confidence 5444422 112567888889999988776430 0268899999888777777544 89999999999
Q ss_pred HHHHhc
Q 006912 506 LEEEAA 511 (626)
Q Consensus 506 l~~~~~ 511 (626)
+-+.-.
T Consensus 964 FkrTH~ 969 (997)
T 1vsy_5 964 FKKVRA 969 (997)
T ss_dssp HHHHTS
T ss_pred HHhccc
Confidence 876543
No 111
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.28 E-value=0.00012 Score=66.66 Aligned_cols=186 Identities=20% Similarity=0.173 Sum_probs=122.2
Q ss_pred hhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhh
Q 006912 100 PCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPIN 179 (626)
Q Consensus 100 ~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~ 179 (626)
..++++++.||..++..+ + ...+..+++++++.+|..+...| +.
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~-------~~~l~~L~~D~~~~VR~~aA~~L-------~~--------------- 100 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------P-------VEALTPLIRDSDEVVRRAVAYRL-------PR--------------- 100 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------C-------GGGGGGGTTCSSHHHHHHHHTTS-------CS---------------
T ss_pred HHhcCCCHHHHHHHHHhC-------C-------HHHHHHHccCcCHHHHHHHHHHC-------CH---------------
Confidence 345789999999988743 1 12366677899999998887532 10
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhh
Q 006912 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (626)
Q Consensus 180 ~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 259 (626)
+.+...++|+++.||..+...+ +. ..+..+++|+++.||..+...+ .+
T Consensus 101 ---~~L~~ll~D~d~~VR~~aA~~l-------~~----------~~L~~L~~D~d~~VR~~aA~~l------~~------ 148 (244)
T 1lrv_A 101 ---EQLSALMFDEDREVRITVADRL-------PL----------EQLEQMAADRDYLVRAYVVQRI------PP------ 148 (244)
T ss_dssp ---GGGGGTTTCSCHHHHHHHHHHS-------CT----------GGGGGGTTCSSHHHHHHHHHHS------CG------
T ss_pred ---HHHHHHHcCCCHHHHHHHHHhC-------CH----------HHHHHHHcCCCHHHHHHHHHhc------CH------
Confidence 1355678899999999988743 21 1244567899999999888732 11
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCC
Q 006912 260 LRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDL 339 (626)
Q Consensus 260 l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~ 339 (626)
+.+....+|.++.||..+... +.. + ++..+.
T Consensus 149 -----~~l~~l~~D~d~~VR~~aa~~---l~~---------~--------ll~~ll------------------------ 179 (244)
T 1lrv_A 149 -----GRLFRFMRDEDRQVRKLVAKR---LPE---------E--------SLGLMT------------------------ 179 (244)
T ss_dssp -----GGGGGTTTCSCHHHHHHHHHH---SCG---------G--------GGGGST------------------------
T ss_pred -----HHHHHHHcCCCHHHHHHHHHc---CCH---------H--------HHHHHH------------------------
Confidence 123356788999999988763 110 0 110000
Q ss_pred CcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHH
Q 006912 340 KPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAI 419 (626)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l 419 (626)
.+.+|.+|..++..+ +. +.+..++++++ |.+|.++...++
T Consensus 180 ---------------------~D~d~~VR~aaa~~l-------~~-------~~L~~Ll~D~d---~~VR~~aa~~l~-- 219 (244)
T 1lrv_A 180 ---------------------QDPEPEVRRIVASRL-------RG-------DDLLELLHDPD---WTVRLAAVEHAS-- 219 (244)
T ss_dssp ---------------------TCSSHHHHHHHHHHC-------CG-------GGGGGGGGCSS---HHHHHHHHHHSC--
T ss_pred ---------------------cCCCHHHHHHHHHhC-------CH-------HHHHHHHcCCC---HHHHHHHHHcCC--
Confidence 112367898887652 22 34566688998 999999988754
Q ss_pred HccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHH
Q 006912 420 AEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLS 458 (626)
Q Consensus 420 ~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~ 458 (626)
.+.+... +|+++.||.++...||
T Consensus 220 ---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 ---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred ---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 1344444 9999999999976554
No 112
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.95 E-value=0.25 Score=46.07 Aligned_cols=197 Identities=10% Similarity=0.127 Sum_probs=133.0
Q ss_pred HHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcC---------chHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhch-
Q 006912 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---------GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP- 163 (626)
Q Consensus 94 i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~---------~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~- 163 (626)
+...|+..|..-+-.-|+.++.++..+.+..... ..|+++..+..+..+++... .+-.+|+.+++.-.
T Consensus 79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl--~~G~mLRecir~e~l 156 (341)
T 1upk_A 79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL--NCGIMLRECIRHEPL 156 (341)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH--HHHHHHHHHHTSHHH
T ss_pred HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHh--HHHHHHHHHHHhHHH
Confidence 4445666666666777788888877777653211 24788888888887665322 22223333333211
Q ss_pred -hccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccc----hHHHHhHHHHHHHHHHhcCCCCHHHH
Q 006912 164 -QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP----SALFVSMDQYLQGLFLLSNDPSAEVR 238 (626)
Q Consensus 164 -~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~ 238 (626)
..+- -...+..+++..+.++-++..-|+..+..+...-+ +.+..+.+.++...-+++..++--+|
T Consensus 157 a~~iL----------~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk 226 (341)
T 1upk_A 157 AKIIL----------WSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK 226 (341)
T ss_dssp HHHHH----------HSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHh----------ccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence 0000 12234467788899999999999999988875432 34455666777777788888888899
Q ss_pred HHHHHHHHHHHhh--CccchhhhHH--HHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhh
Q 006912 239 KLVCAAFNLLIEV--RPSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEF 302 (626)
Q Consensus 239 ~~~~~~l~~l~~~--~~~~~~~~l~--~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 302 (626)
..++..|+.++-. ....+..|+. +-+..++..+.+....++..|+.+.--++-.+.....+..+
T Consensus 227 RQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~I 294 (341)
T 1upk_A 227 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDI 294 (341)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHH
Confidence 9999999998864 4456666764 56667888899999999999999888777665554444433
No 113
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.30 E-value=0.001 Score=60.41 Aligned_cols=186 Identities=18% Similarity=0.086 Sum_probs=117.3
Q ss_pred HHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHH
Q 006912 138 TCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV 217 (626)
Q Consensus 138 ~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~ 217 (626)
+.+.++++.+|..+...+ +. . .+...++|+++.||..+.+.+ +.
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~~--------------~----~l~~L~~D~~~~VR~~aA~~L-------~~---- 100 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------PV--------------E----ALTPLIRDSDEVVRRAVAYRL-------PR---- 100 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------CG--------------G----GGGGGTTCSSHHHHHHHHTTS-------CS----
T ss_pred HHhcCCCHHHHHHHHHhC-------CH--------------H----HHHHHccCcCHHHHHHHHHHC-------CH----
Confidence 445778888888776642 10 0 145567888899998888652 21
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhccCCcch
Q 006912 218 SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHE 297 (626)
Q Consensus 218 ~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~ 297 (626)
+.+..+++|+++.||..+...+ .+ +.+....+|.+..||..+..- +..
T Consensus 101 ------~~L~~ll~D~d~~VR~~aA~~l------~~-----------~~L~~L~~D~d~~VR~~aA~~---l~~------ 148 (244)
T 1lrv_A 101 ------EQLSALMFDEDREVRITVADRL------PL-----------EQLEQMAADRDYLVRAYVVQR---IPP------ 148 (244)
T ss_dssp ------GGGGGTTTCSCHHHHHHHHHHS------CT-----------GGGGGGTTCSSHHHHHHHHHH---SCG------
T ss_pred ------HHHHHHHcCCCHHHHHHHHHhC------CH-----------HHHHHHHcCCCHHHHHHHHHh---cCH------
Confidence 2355677888899988877743 11 123445678888888887751 110
Q ss_pred hHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHH
Q 006912 298 NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV 377 (626)
Q Consensus 298 ~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~ 377 (626)
+ ++..+. .+.+|.+|..+...
T Consensus 149 ---~--------~l~~l~---------------------------------------------~D~d~~VR~~aa~~--- 169 (244)
T 1lrv_A 149 ---G--------RLFRFM---------------------------------------------RDEDRQVRKLVAKR--- 169 (244)
T ss_dssp ---G--------GGGGTT---------------------------------------------TCSCHHHHHHHHHH---
T ss_pred ---H--------HHHHHH---------------------------------------------cCCCHHHHHHHHHc---
Confidence 0 000000 01124688887664
Q ss_pred HHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHH
Q 006912 378 LSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (626)
Q Consensus 378 l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l 457 (626)
.+. +.+..++++++ |.+|.++...+ . .+.+...+.|+++.||.+++..+
T Consensus 170 ----l~~-------~ll~~ll~D~d---~~VR~aaa~~l-------~----------~~~L~~Ll~D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 170 ----LPE-------ESLGLMTQDPE---PEVRRIVASRL-------R----------GDDLLELLHDPDWTVRLAAVEHA 218 (244)
T ss_dssp ----SCG-------GGGGGSTTCSS---HHHHHHHHHHC-------C----------GGGGGGGGGCSSHHHHHHHHHHS
T ss_pred ----CCH-------HHHHHHHcCCC---HHHHHHHHHhC-------C----------HHHHHHHHcCCCHHHHHHHHHcC
Confidence 332 23446778888 99999988652 1 14577778999999999997654
Q ss_pred HHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 006912 458 SRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFA 504 (626)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~ 504 (626)
+ .+.+.. |+|+++.||..+..+|+
T Consensus 219 ~----------------------~~~L~~-L~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 219 S----------------------LEALRE-LDEPDPEVRLAIAGRLG 242 (244)
T ss_dssp C----------------------HHHHHH-CCCCCHHHHHHHHCCC-
T ss_pred C----------------------HHHHHH-ccCCCHHHHHHHHHHhC
Confidence 3 123333 48999999999887654
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.28 E-value=0.63 Score=42.24 Aligned_cols=170 Identities=14% Similarity=0.168 Sum_probs=114.7
Q ss_pred ChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhcc
Q 006912 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (626)
Q Consensus 87 ~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~ 166 (626)
+++...++.+.+++...+.+..+|+..+..+...++.. +...+..++.|..++.+.++.+.+.++.+...+....-..+
T Consensus 47 dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i 125 (257)
T 3gs3_A 47 CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYL 125 (257)
T ss_dssp TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888767888999999999999999764 56778899999999999999999998888887776654433
Q ss_pred ccCCCC-----CccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhc--cc-------------------------hH
Q 006912 167 DSDVPG-----LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML--MP-------------------------SA 214 (626)
Q Consensus 167 ~~~~~~-----~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~--~~-------------------------~~ 214 (626)
...-.. -....+..+=..+++.+.+.+..+|..++|.+-.++.. .+ ..
T Consensus 126 ~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~ 205 (257)
T 3gs3_A 126 CSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREK 205 (257)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHH
T ss_pred hcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHH
Confidence 221000 00122333444566667778899999999999887732 11 01
Q ss_pred HHHhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhCccchh
Q 006912 215 LFVSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLE 257 (626)
Q Consensus 215 ~~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~ 257 (626)
+..--..++..|+..+.++ +.-.-..++.+|..++...|.+..
T Consensus 206 Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~ 250 (257)
T 3gs3_A 206 LQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMG 250 (257)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHH
Confidence 1111224566666655543 333455777888888888887654
No 115
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.14 E-value=0.28 Score=42.18 Aligned_cols=127 Identities=16% Similarity=0.102 Sum_probs=88.5
Q ss_pred HHHHHHhhcCc-chHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCC---CchHH
Q 006912 374 ALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD---KFPLI 449 (626)
Q Consensus 374 ~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d---~~~~v 449 (626)
++..+..-.|= .++|.++.++.+.+... ..++..-...+....++..+-.-.+.+|+.+++|.++.++-. ....+
T Consensus 28 aL~sL~~D~gL~~LlPyf~~fI~~~v~~n-l~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~L 106 (196)
T 4atg_A 28 AIECLEKESGLQQLVPYFIQHISELILKS-FKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDV 106 (196)
T ss_dssp HHHHHHHCSSCTTTHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHH
T ss_pred HHHHHhcCCChhhhHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 45555555553 56666666666555442 123777777788888888876667789999999998887632 12289
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCC--HHHHHHHHHHHHHH
Q 006912 450 RSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN--KRVQEAACSAFATL 506 (626)
Q Consensus 450 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~--~~v~~~a~~al~~l 506 (626)
|..|+..++.++..+... ....-+.++..+.+.+.|++ .....-|...|..+
T Consensus 107 Rd~AA~lL~~I~~~~~~~-----y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 107 RKMSADIVKYIYDTYSRS-----YKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHHHHHHHHHHHHTTT-----STTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcc-----CchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 999999999999988753 34556788888888888764 45555666666654
No 116
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.09 E-value=1.1 Score=43.24 Aligned_cols=175 Identities=13% Similarity=0.135 Sum_probs=120.5
Q ss_pred cchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHH
Q 006912 384 DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (626)
Q Consensus 384 ~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (626)
..+++.+++.+.++..+++ ..+|.-....+...+.. -.+++..+++.+...+.|.++.|...++.+.+.+...
T Consensus 58 psLl~~fl~~il~f~~d~~---~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl 130 (386)
T 3o2t_A 58 PTLLDNFLDEIIAFQADKS---IEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKV 130 (386)
T ss_dssp GGGGGGGHHHHHGGGGCSC---HHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCc---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4678888998988888887 89998888888776642 2356788888888889999999999998888876632
Q ss_pred Hhh-hc-CCC------chhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcc-------------cc----c---
Q 006912 464 IVQ-DI-GHQ------NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-------------EL----A--- 515 (626)
Q Consensus 464 ~~~-~~-~~~------~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~-------------~~----~--- 515 (626)
.-. .. .+. .....+..+-..++..+.+.+..||..|.+.+..++-.... ++ .
T Consensus 131 ~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~n 210 (386)
T 3o2t_A 131 ALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRD 210 (386)
T ss_dssp HHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTT
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCC
Confidence 111 10 111 23455666777788888888999999999999999854310 10 0
Q ss_pred -c---------hHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHH
Q 006912 516 -P---------RLEIILQHLMMAFGKYQ--RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (626)
Q Consensus 516 -~---------~l~~i~~~l~~~l~~~~--~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~ 571 (626)
| -...++..|+..+.... +.....++.+|+.+++. +|.|+..+++.+...
T Consensus 211 Hp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~------RP~~~~rIl~aL~~l 272 (386)
T 3o2t_A 211 HPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQ------RPMFMSEVIQAYETL 272 (386)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHH------SGGGHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHhh
Confidence 1 13466677777776532 23344677777777755 346888888877643
No 117
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=95.98 E-value=2.2 Score=45.84 Aligned_cols=122 Identities=13% Similarity=0.138 Sum_probs=90.7
Q ss_pred cCChhHHHHHHHhHhh----hhhCCcHHHHHHHHHHHHHHHhhcC---cCchHHHHHHHHHHhcc---CChhHHhHHHHH
Q 006912 85 SMSPSNQQYIKSELLP----CLGAADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDS---NDINHMEGAMDA 154 (626)
Q Consensus 85 ~l~~~~~~~i~~~L~~----~l~~~~~~vr~~~~~~l~~i~~~~~---~~~~~~ll~~l~~~l~~---~~~~~r~~~l~~ 154 (626)
.++++.+..+.+.+.+ ++-+.+..+...+..++..++-..| .-..|.++..+...+.+ .++....+++.+
T Consensus 327 ~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~ 406 (799)
T 1vsy_4 327 CLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQ 406 (799)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHH
Confidence 3677777777766655 3457889999999999999998876 66678888888888877 455555677888
Q ss_pred HHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccc
Q 006912 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (626)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (626)
+..++..+... ..+..++..++..++.++.-+|+.--..+++.+..++..+|
T Consensus 407 l~~~~r~lv~~------~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 407 FTRVIRFIVMD------KLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp HHTTHHHHTTS------TTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhcC------cccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 87776655432 11224566777777788888888888889999999988876
No 118
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.95 E-value=1.1 Score=41.94 Aligned_cols=184 Identities=14% Similarity=0.195 Sum_probs=113.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCh-----hHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCc---hHHHH
Q 006912 62 GKSVEIRQAAGLLLKNNLRTAYKSMSP-----SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG---WLELL 133 (626)
Q Consensus 62 ~~~~~~r~~a~~~l~~~i~~~~~~l~~-----~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~---~~~ll 133 (626)
.-+-+.|+-++.++.+.++..-..-.+ ..+..+...|+.+... +.+--..+.++...++.+.-.. +.+.+
T Consensus 89 ~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~--~diAl~~G~mLRecir~e~la~~iL~~~~f 166 (341)
T 1upk_A 89 LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES--PEIALNCGIMLRECIRHEPLAKIILWSEQF 166 (341)
T ss_dssp GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS--TTTHHHHHHHHHHHHTSHHHHHHHHHSGGG
T ss_pred cCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhcc--chhHhHHHHHHHHHHHhHHHHHHHhccHHH
Confidence 456677777777776665432111111 0123334444444433 3333445555665555421000 01122
Q ss_pred HHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccch
Q 006912 134 QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS 213 (626)
Q Consensus 134 ~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~ 213 (626)
-.+.+.++.++.++-..|...+..+.......... ++....+.++..+-+++++++.-.|..+++.|+.++..-+.
T Consensus 167 ~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvae----fL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N 242 (341)
T 1upk_A 167 YDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAE----FLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHN 242 (341)
T ss_dssp GHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHH----HHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHH----HHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchH
Confidence 24556788888888888888888887765443221 11244567788888889999999999999999999865321
Q ss_pred --HHHHhH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 006912 214 --ALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (626)
Q Consensus 214 --~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (626)
....++ +.-+..+..++.|++..++-+|+.++-.++.+
T Consensus 243 ~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 243 FTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 222222 24578888999999999999999999888864
No 119
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.43 E-value=1.5 Score=39.80 Aligned_cols=129 Identities=5% Similarity=0.050 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHh
Q 006912 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (626)
Q Consensus 109 vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 188 (626)
.+-....-+..++-...+..++++++.+.....+.+..+|......+...+..-. .....+++.+...
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~------------~l~~~~l~~L~~L 98 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV------------ELLPHVINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG------------GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Confidence 4443333444444333466889999999998888888999999999988885433 3467888889999
Q ss_pred cCCCChHHHHHHHHHHHHHHhc-------cc------hHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006912 189 FQSPHTSLRKLSLGSVNQFIML-------MP------SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (626)
Q Consensus 189 l~~~~~~vr~~al~~l~~~~~~-------~~------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 249 (626)
+++.++.|.+.++.|..++... .| +..-+.+..+=..+++.....+..+|..+++++..++
T Consensus 99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 9999999998888877665432 12 1233445455566777777788999999999998776
No 120
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.97 E-value=3.7 Score=46.15 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=99.1
Q ss_pred CcHHHHHHHHHHHHHHHhhc-------CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccch
Q 006912 105 ADRHIRSTVGTIVSVVVQLG-------GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECP 177 (626)
Q Consensus 105 ~~~~vr~~~~~~l~~i~~~~-------~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~ 177 (626)
.++.+|..+..+++.++... +....+.+...+.+.+...+...+..++.+|+.+-.
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------------- 469 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------------- 469 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------------
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-----------------
Confidence 46788998888888888653 123356677777777777777778888888887643
Q ss_pred hhhhHHHHHHhcCC-------CChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 006912 178 INIFLPRLLQFFQS-------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (626)
Q Consensus 178 ~~~il~~l~~~l~~-------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~ 250 (626)
...++.+.+++.. ....+|.+|+.+|..+....|....+.+ ++.+.+. ..++++|..|+..|. +
T Consensus 470 -p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il---~~i~~n~--~e~~EvRiaA~~~Lm---~ 540 (1056)
T 1lsh_A 470 -PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIV---LPIFLNV--AIKSELRIRSCIVFF---E 540 (1056)
T ss_dssp -GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHH---HHHHHCT--TSCHHHHHHHHHHHH---H
T ss_pred -hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHH---HHHhcCC--CCChHHHHHHHHHHH---H
Confidence 2334455555432 2457899999999888765554443322 3333222 346789988877664 3
Q ss_pred hCccchhhhHHHHHHHHHhhccCCChHHHHHHHhHHHHhhcc
Q 006912 251 VRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 251 ~~~~~~~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
..|.. ..+..+... ...+.+.+|+......+.++++.
T Consensus 541 t~P~~--~~l~~ia~~---l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 541 SKPSV--ALVSMVAVR---LRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp TCCCH--HHHHHHHHH---HTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HCcCH--HHHHHHHHH---HhhCchHHHHHHHHHHHHHHHhc
Confidence 33331 112222222 23446788888888888888876
No 121
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.40 E-value=1.1 Score=38.38 Aligned_cols=129 Identities=14% Similarity=0.161 Sum_probs=75.7
Q ss_pred chhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccC--CHHHHHHHHHHH
Q 006912 426 GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACSAF 503 (626)
Q Consensus 426 ~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~--~~~v~~~a~~al 503 (626)
+...|+..+...+.. ..|.+|+..+..=. ...+.++-++..+.+.+... +...-...+...
T Consensus 8 Elq~yf~~It~a~~~-------~~r~~aL~sL~~D~----------gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~ 70 (196)
T 4atg_A 8 ELQLYFDKILSMIKS-------DMKDIAIECLEKES----------GLQQLVPYFIQHISELILKSFKEAEVLKTCIALY 70 (196)
T ss_dssp HHHHHHHHHHHHHTS-------TTHHHHHHHHHHCS----------SCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-------HHHHHHHHHHhcCC----------ChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 344566666665554 34777765543211 12223333333333322211 344444445555
Q ss_pred HHHHHHhcccccchHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHh
Q 006912 504 ATLEEEAAEELAPRLEIILQHLMMAFGKYQ---RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQ 573 (626)
Q Consensus 504 ~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~---~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~ 573 (626)
..++++-.-.+.||+..+++.+++++-..+ ...++.+...++.++...+.... ..-+.++..+.+.|.
T Consensus 71 ~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~--~L~~RI~~tl~k~l~ 141 (196)
T 4atg_A 71 FSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYK--TLAPRVLKTLKGVWM 141 (196)
T ss_dssp HHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTST--THHHHHHHHHHHHHT
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCc--hHHHHHHHHHHHHHc
Confidence 555555445678999999999999886432 24556899999999999987542 455667666666665
No 122
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=94.40 E-value=0.57 Score=38.03 Aligned_cols=79 Identities=8% Similarity=0.061 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Q 006912 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (626)
Q Consensus 476 ~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~ 553 (626)
.-...+..+.+.+.+.++.++..|+..|..++++||..+...+ ..++..+..++.+.+..++..+++.+.....+.+.
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3456778888889999999999999999999999997654322 44555556666666778888999999988888765
Q ss_pred c
Q 006912 554 E 554 (626)
Q Consensus 554 ~ 554 (626)
+
T Consensus 119 ~ 119 (140)
T 3ldz_A 119 D 119 (140)
T ss_dssp C
T ss_pred C
Confidence 4
No 123
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.95 E-value=4.7 Score=38.85 Aligned_cols=177 Identities=14% Similarity=0.188 Sum_probs=116.1
Q ss_pred ChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhcc
Q 006912 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (626)
Q Consensus 87 ~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~ 166 (626)
+++...++...++..-.+.+..+|+.++..+...++.. .+..+..++.|..++.+.++.+.+.++.+...+....-..+
T Consensus 57 dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 57 DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-IELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666777667888999999999999999764 45568899999999999999999888888877765433322
Q ss_pred ccCCC-C----CccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhcc-c-----h----------------------
Q 006912 167 DSDVP-G----LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM-P-----S---------------------- 213 (626)
Q Consensus 167 ~~~~~-~----~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~-~-----~---------------------- 213 (626)
...-. . -....+..+-..++..+.+.+..+|..+++.+-.++... + .
T Consensus 136 ~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~ 215 (386)
T 3o2t_A 136 VKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQ 215 (386)
T ss_dssp HHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSC
T ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCC
Confidence 11000 0 001223444445666677788999999999998777321 0 0
Q ss_pred --HHHHhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhCccchhhhHHHHH
Q 006912 214 --ALFVSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLF 264 (626)
Q Consensus 214 --~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~ 264 (626)
.+..--..++..|+..+..+ +.-.-..++.+|..++...|.+....++.+.
T Consensus 216 ~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~ 270 (386)
T 3o2t_A 216 YNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYE 270 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 01111235677777777642 3334456788888899999887655444443
No 124
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=93.61 E-value=9.3 Score=41.10 Aligned_cols=365 Identities=12% Similarity=0.056 Sum_probs=193.2
Q ss_pred cCChhHHHHHHHhHhhhhhC--CcHHHHHHHHHHHHHHHhh--------------cCcCchHHHHHHHHHHhccCChhH-
Q 006912 85 SMSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQL--------------GGIAGWLELLQALVTCLDSNDINH- 147 (626)
Q Consensus 85 ~l~~~~~~~i~~~L~~~l~~--~~~~vr~~~~~~l~~i~~~--------------~~~~~~~~ll~~l~~~l~~~~~~~- 147 (626)
.++.+.+..+...+...+.. .+..+ ...+.++..+.+. +-.-.|..+...+.+.+-..+...
T Consensus 16 ~~~~~~~~~Lv~l~Y~l~~~~g~~~~~-~~~~~~l~~Ll~~~~~~~~~~~ll~~~dL~LdWrPLy~~l~~~~~~~~~~~~ 94 (799)
T 1vsy_4 16 DFPVALRKSLATVYYYLSLVQGQKVYR-QMHVDMFERLVSLDDDRTQFTELLQKQGLLLDHQIMLNFLCEFLPYPDPDYA 94 (799)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCSSCCCH-HHHHHHHHHHSCSCBTTBCHHHHHHHTTCCCCHHHHHHHHTTTSCCSSTTTC
T ss_pred CCCHHHHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHHhcCcccccchhhccccccceeccHHHHHHHHHhCCCcCcccc
Confidence 47788888888888776532 23333 5566777666542 234578888877766654332221
Q ss_pred ------Hh--HHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhH
Q 006912 148 ------ME--GAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (626)
Q Consensus 148 ------r~--~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 219 (626)
++ .....+..++..+...+.... .....+++..+...+. ++.. ..++..+..++...... ..+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~l~~~ar~fF~~~~----~~~~~eil~e~~p~l~-p~s~--~~~~~~l~~fLP~~~~~-~~~~ 166 (799)
T 1vsy_4 95 RYELSSKEDLQLFRLLLKHAHNAKPFFDKSK----ESLLVDTMNFLLSSLA-PSTM--MAVMPIVTSVVPYHYHI-HSKI 166 (799)
T ss_dssp CCCTTSTTTHHHHHHHHHHHHHTSTTSCTTC----GGGHHHHHHHHGGGCS-TTTH--HHHHHHHHHHSCCCCCS-SCCS
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHcCCCCC----ccHHHHHHHHHHHhcC-chhH--HHHHHHHHHHcCCCCCc-hhhh
Confidence 11 456777777766655444110 0235777777777775 3211 13333333333221110 0112
Q ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhC--------------ccchhhh-------HHHHHHHHHhhccCCC-
Q 006912 220 DQYLQGLFLLSN--DPSAEVRKLVCAAFNLLIEVR--------------PSFLEPH-------LRNLFEYMLQVNKDTD- 275 (626)
Q Consensus 220 ~~~l~~l~~~~~--~~~~~~~~~~~~~l~~l~~~~--------------~~~~~~~-------l~~l~~~~~~~~~~~~- 275 (626)
..+++.++.+-. +.+...-......+..++... .-.+++| ++.++..++..+.+..
T Consensus 167 ~~w~~~~f~lW~~~~~s~~wd~~~~~l~~rla~~~~~~~~~~~~~~~~g~idw~~~gift~~q~~~iFt~~lr~l~~~~~ 246 (799)
T 1vsy_4 167 IDYFPFCYSIWSSVSANVAIDTHMYDFVGSISKDVHNKILSSEHEKDVVGVEFGEFGIFTDDQMTFMFNRLQGHLRTDGQ 246 (799)
T ss_dssp GGGHHHHHHHBTTBCSCHHHHHHHHHHHHHHHHHHHHHHSSSCSCTTCCCSCCCSSTTCCHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhHHHHHHHHHhcccCchHHHHHHHHHHHHHHHhhhhhcccccccCCCccchHhhCcccHHHHHHHHHHHHHhccCcCC
Confidence 245566665432 123333344445555555431 1124556 7777777776654211
Q ss_pred -hHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCC
Q 006912 276 -DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENP 354 (626)
Q Consensus 276 -~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 354 (626)
......| ..+...... .....+..++++++..+-.+.--+.
T Consensus 247 ~~~~~~~a-~~IV~sl~~-~~~~~~~~~L~~Li~~iesy~HPSN------------------------------------ 288 (799)
T 1vsy_4 247 IHSYSRTV-KPFVYAING-SKKDRFFEKLVSLAKAIETFIHPSN------------------------------------ 288 (799)
T ss_dssp CSSHHHHH-HHHHTTCCT-TSCTTTHHHHHHHHHHHHHHHSTTC------------------------------------
T ss_pred ccchHHHH-HHHHHHcCC-CCchHHHHHHHHHHHHHhcccCCCC------------------------------------
Confidence 1111222 222222211 1123344556666555533322111
Q ss_pred CCCCccccccccH------HHHHHHHHHHHHhh-------cC----------cchHHhHHHHHHHhhcCCCCCChhHHHH
Q 006912 355 EDDDDDIVNVWNL------RKCSAAALDVLSNV-------FG----------DEILPTLMPVIQAKLSASGDEAWKDREA 411 (626)
Q Consensus 355 ~~~~~~~~~~~~~------r~~a~~~l~~l~~~-------~~----------~~~~~~l~~~l~~~l~~~~~~~~~~r~a 411 (626)
.+.|+. +........++.+. .| ..++..+.|.+...+.+.+ ..+..-
T Consensus 289 -------~G~Wt~~L~~Fl~~L~~~f~kR~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~g~fSK~---~~~~~~ 358 (799)
T 1vsy_4 289 -------NGFWTKPNAKFVHAFIKSYHGRVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIISLGSQNKN---PDIANY 358 (799)
T ss_dssp -------CSTTHHHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHHHHHTCSS---HHHHHH
T ss_pred -------CCccHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHHHHhCcCC---cchHHH
Confidence 111211 11111122222211 11 1335567777777777777 788888
Q ss_pred HHHHHHHHHccCccchhhhHHHHHHHHhhhcCC---CchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHh
Q 006912 412 AVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD---KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI 488 (626)
Q Consensus 412 al~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l 488 (626)
+..++..++.-.+..-.-.++.++..+.+.++. ..+.=..+|+.++..++..+... .....++.+++..++..+
T Consensus 359 ~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~---~~yr~hl~~lL~l~LpgI 435 (799)
T 1vsy_4 359 YISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMD---KLYRVHITNVLSMLVSKL 435 (799)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTS---TTGGGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcC---cccHHHHHHHHHHHhccC
Confidence 888998888855522223455556666666665 44554556788888888777542 234678889999999998
Q ss_pred ccCCHHHHHHHHHHHHHHHHH
Q 006912 489 LDTNKRVQEAACSAFATLEEE 509 (626)
Q Consensus 489 ~d~~~~v~~~a~~al~~l~~~ 509 (626)
+-+++.--..+...+..++..
T Consensus 436 D~ND~~KT~~tl~fi~~i~s~ 456 (799)
T 1vsy_4 436 DMNDTNLTSNLINGIVSIAAF 456 (799)
T ss_dssp CSSCHHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHHHh
Confidence 877777777788888888764
No 125
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=93.38 E-value=6.7 Score=38.79 Aligned_cols=56 Identities=11% Similarity=-0.041 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHH--HHHHHhhhcCCCchHHHHHHHHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~--l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (626)
+.+-..||.=+|.++...+... ..+.+ .=..+...+.|+++.||+.|+.|++.+..
T Consensus 419 ~~~laVAc~Digefvr~~P~gr-~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 419 KIIIQVALNDITHVVELLPESI-DVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHH-HHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred cceEEeecccHHHHHHHCcchh-HHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7777788888899888765432 22222 34567788899999999999999988764
No 126
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.22 E-value=1.9 Score=48.50 Aligned_cols=174 Identities=16% Similarity=0.057 Sum_probs=112.5
Q ss_pred ChHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhhc---cCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhh
Q 006912 48 DFNNYLAFILARAE-GKSVEIRQAAGLLLKNNLRTAYK---SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQL 123 (626)
Q Consensus 48 ~~~~~l~~il~~~~-~~~~~~r~~a~~~l~~~i~~~~~---~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~ 123 (626)
+.+..+..++...+ ..++.+|..+.+.+...+.+... ..+++....+.+.+.+.+...+..-+..+.++||++..
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~- 469 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ- 469 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence 35666666665321 35678898888888887765432 23456567788888888877777777777888888774
Q ss_pred cCcCchHHHHHHHHHHhcc-------CChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCC--CCh
Q 006912 124 GGIAGWLELLQALVTCLDS-------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHT 194 (626)
Q Consensus 124 ~~~~~~~~ll~~l~~~l~~-------~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--~~~ 194 (626)
|..++.+.+++.. ...++|..|+.+|..+....+ ..+-+.+++.+.+ .++
T Consensus 470 ------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---------------~~v~~il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 470 ------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---------------RKVQEIVLPIFLNVAIKS 528 (1056)
T ss_dssp ------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---------------HHHHHHHHHHHHCTTSCH
T ss_pred ------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---------------HHHHHHHHHHhcCCCCCh
Confidence 2345566665531 234688889999887765443 2334456667644 678
Q ss_pred HHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhC
Q 006912 195 SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVR 252 (626)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~ 252 (626)
++|.+|+..|. ...|+. ..+..+...+ .+++.+|+.-+...|..+.+..
T Consensus 529 EvRiaA~~~Lm---~t~P~~------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 529 ELRIRSCIVFF---ESKPSV------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHH---HTCCCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHH---HHCcCH------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 99999988773 333321 1234444433 4577888877777777777654
No 127
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=93.05 E-value=6.8 Score=37.88 Aligned_cols=235 Identities=14% Similarity=0.130 Sum_probs=133.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHh-cCCC---hHH-HHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHhhccCCh
Q 006912 17 ICRLLEQQISPSSTADKSQIWQQLQQYS-QFPD---FNN-YLAFILAR---AEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (626)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~-~~p~---~~~-~l~~il~~---~~~~~~~~r~~a~~~l~~~i~~~~~~l~~ 88 (626)
+.+++.-..|+|+. .|......|..++ +..+ ++. ..-+++.. ..+.--.+-. ..-+++..+...-..+.+
T Consensus 131 i~~Ll~lfdSeDpr-ER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIae-LLeilgsIinGfa~PLke 208 (403)
T 3fga_B 131 VLQLLELFDSEDPR-ERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAE-LLEILGSIINGFALPLKE 208 (403)
T ss_dssp HHHHHHGGGCSCHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHH-HHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHcCCCChH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHH-HHHHHHHHHcccCCCchH
Confidence 56777777788888 8888888887754 2222 111 11111111 0011111110 011222222232224667
Q ss_pred hHHHHHHHhHhhhhhCC-cHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccc
Q 006912 89 SNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (626)
Q Consensus 89 ~~~~~i~~~L~~~l~~~-~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~ 167 (626)
+-+..+...|+++-+.. -...-..++.|+..++..++ ..-..++..+++.---.++.-...-+.-+..+++..+..-
T Consensus 209 ehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp-~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~- 286 (403)
T 3fga_B 209 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS-TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSE- 286 (403)
T ss_dssp HHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCG-GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHH-
T ss_pred HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCc-hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHH-
Confidence 77777888888877654 23344677888888888763 3345556666665544454444445566666766554321
Q ss_pred cCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHH--HHHhccchHHHHhHHHHHHHHHHhcC-CCCHHHHHHHHHH
Q 006912 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN--QFIMLMPSALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAA 244 (626)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~--~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~ 244 (626)
+......++..+..++++++..|...|+.... .++..+.+.....++-+++.+.+... +=+..++..++.+
T Consensus 287 ------f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~v 360 (403)
T 3fga_B 287 ------FVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNA 360 (403)
T ss_dssp ------HHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 02345667777888889999999998885542 12222111111222333455555433 3367899999999
Q ss_pred HHHHHhhCccchhhhHH
Q 006912 245 FNLLIEVRPSFLEPHLR 261 (626)
Q Consensus 245 l~~l~~~~~~~~~~~l~ 261 (626)
+..+.+..+..+.....
T Consensus 361 lk~l~e~d~~lF~~~~~ 377 (403)
T 3fga_B 361 LKLFMEMNQKLFDDCTQ 377 (403)
T ss_dssp HHHHHTTSCCCCCTTHH
T ss_pred HHHHHHhCHHHHHHHHH
Confidence 99999999988775443
No 128
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=92.19 E-value=1.1 Score=37.40 Aligned_cols=78 Identities=6% Similarity=0.041 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhcc
Q 006912 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAVGF 553 (626)
Q Consensus 477 ~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~i~~~l~~~l~~-~~~~~~~~~~~~l~~i~~~~~~ 553 (626)
-...+..+.+.+++.++.++..|+..|..++++||..|...+ ..+++.+..++.. .+..+++.+++.|.....+++.
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 456677888889999999999999999999999997654221 3455555555554 4567788899999988888775
Q ss_pred c
Q 006912 554 E 554 (626)
Q Consensus 554 ~ 554 (626)
.
T Consensus 130 ~ 130 (163)
T 1x5b_A 130 D 130 (163)
T ss_dssp C
T ss_pred C
Confidence 4
No 129
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=91.56 E-value=3.3 Score=33.88 Aligned_cols=78 Identities=8% Similarity=-0.025 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccc--hHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHH
Q 006912 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAP--RLEIILQHLMMAFGK------YQRRNLRIVYDAIGTL 547 (626)
Q Consensus 476 ~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~--~l~~i~~~l~~~l~~------~~~~~~~~~~~~l~~i 547 (626)
.-...+..+.+.+++.++.++..|+..|..++++||..|.. --..++..|.+++.. .+..++..+++.+...
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 34567788888899999999999999999999999976532 123556666666643 3457788999999999
Q ss_pred HHHhcc
Q 006912 548 ADAVGF 553 (626)
Q Consensus 548 ~~~~~~ 553 (626)
..+++.
T Consensus 125 ~~~f~~ 130 (149)
T 3g2s_A 125 TVGLPE 130 (149)
T ss_dssp HHHCTT
T ss_pred HHHhCC
Confidence 888764
No 130
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=91.06 E-value=2.1 Score=35.05 Aligned_cols=77 Identities=9% Similarity=-0.026 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccch--HHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHH
Q 006912 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGK------YQRRNLRIVYDAIGTLA 548 (626)
Q Consensus 477 ~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~--l~~i~~~l~~~l~~------~~~~~~~~~~~~l~~i~ 548 (626)
-...+..+.+.+++.++.++..|+..|..++++||..|... -..++..|..++.. ....++..+++.+....
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45667788888999999999999999999999999766332 24666666666653 24577889999999988
Q ss_pred HHhcc
Q 006912 549 DAVGF 553 (626)
Q Consensus 549 ~~~~~ 553 (626)
.+++.
T Consensus 116 ~~f~~ 120 (148)
T 1mhq_A 116 VWFPE 120 (148)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 88754
No 131
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=91.06 E-value=13 Score=36.68 Aligned_cols=228 Identities=14% Similarity=0.157 Sum_probs=127.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHh-cCCChHHHH----HHHHhh---cCCCCHHHHHHHHHHHHHHHHHhhc-cC
Q 006912 16 EICRLLEQQISPSSTADKSQIWQQLQQYS-QFPDFNNYL----AFILAR---AEGKSVEIRQAAGLLLKNNLRTAYK-SM 86 (626)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~a~~~L~~~~-~~p~~~~~l----~~il~~---~~~~~~~~r~~a~~~l~~~i~~~~~-~l 86 (626)
-+.++++-..|+|+. .|......|..++ +..+.-..+ -+++.. ..+..-.+-. ..-+++. |.+-+. .+
T Consensus 163 Fi~~Ll~lfdSeDpR-ERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIae-LLeilgS-IinGfa~PL 239 (449)
T 2npp_B 163 FVLQLLELFDSEDPR-ERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAE-LLEILGS-IINGFALPL 239 (449)
T ss_dssp HHHHHHHTTTSSTHH-HHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHH-HHHHHHH-HHSSCCSSC
T ss_pred HHHHHHHHcCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHH-HHHHHHH-HHhccCCCC
Confidence 356677777778888 8888888777653 333321111 111110 0011111100 0111221 222222 35
Q ss_pred ChhHHHHHHHhHhhhhhCC-cHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhc
Q 006912 87 SPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (626)
Q Consensus 87 ~~~~~~~i~~~L~~~l~~~-~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~ 165 (626)
.++.+..+...|+++.+.. -...-..++.|+..++..++ .--..++..|++.---.+..-...-+.-+..+++..+..
T Consensus 240 Keehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp-~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ 318 (449)
T 2npp_B 240 KEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS-TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPS 318 (449)
T ss_dssp CHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCG-GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHH
T ss_pred cHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCc-HhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHH
Confidence 6777777777888877643 23334577888888887763 333455666666554444433334555666666655432
Q ss_pred cccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHH--HHHhccchHHHHhHHHHHHHHHHhc----C-CCCHHHH
Q 006912 166 LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN--QFIMLMPSALFVSMDQYLQGLFLLS----N-DPSAEVR 238 (626)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~--~~~~~~~~~~~~~~~~~l~~l~~~~----~-~~~~~~~ 238 (626)
- +......++..+..++++++..|...|+..+. .++.. +.++...++|.++..+ . +=+..++
T Consensus 319 e-------f~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~l----i~~n~~~IlPii~p~L~~~s~~HWn~~V~ 387 (449)
T 2npp_B 319 E-------FVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSL----ISDNAAKILPIMFPSLYRNSKTHWNKTIH 387 (449)
T ss_dssp H-------HHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHH----HHTTHHHHHHHHHHHHTSCTTCCSSTTHH
T ss_pred H-------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHH----HHhchhhhHHhhHHHHHHHHHHhcCHHHH
Confidence 1 12445667778888899999999999886553 12222 1223334556555543 2 2245799
Q ss_pred HHHHHHHHHHHhhCccchhh
Q 006912 239 KLVCAAFNLLIEVRPSFLEP 258 (626)
Q Consensus 239 ~~~~~~l~~l~~~~~~~~~~ 258 (626)
..+..++..+.+..+..+..
T Consensus 388 ~la~~vlk~l~e~d~~lf~~ 407 (449)
T 2npp_B 388 GLIYNALKLFMEMNQKLFDD 407 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHH
Confidence 99999999888888876654
No 132
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=90.66 E-value=3.1 Score=34.99 Aligned_cols=96 Identities=11% Similarity=0.010 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~ 485 (626)
|..-...+..+..-.. --.+.+..|...+++.++.|+..|+..+..+.+.++... +.+-.-..++..+.
T Consensus 31 w~~ileicD~I~~~~~--------~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~F---h~evas~~Fl~eL~ 99 (171)
T 1juq_A 31 WEYIIGFCDQINKELE--------GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRF---HNEVGKFRFLNELI 99 (171)
T ss_dssp HHHHHHHHHHHHHSTT--------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHH---HHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCc--------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHH---HHHHhhHHHHHHHH
Confidence 8766655555443211 224467788889999999999999999999998876431 11111244556666
Q ss_pred HHhcc------CCHHHHHHHHHHHHHHHHHhcc
Q 006912 486 KRILD------TNKRVQEAACSAFATLEEEAAE 512 (626)
Q Consensus 486 ~~l~d------~~~~v~~~a~~al~~l~~~~~~ 512 (626)
+.+.. .++.|+..++..+......++.
T Consensus 100 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 100 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 66642 3589999999999999988764
No 133
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=90.59 E-value=3.5 Score=34.66 Aligned_cols=77 Identities=9% Similarity=0.005 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccch--HHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHH
Q 006912 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGK------YQRRNLRIVYDAIGTLA 548 (626)
Q Consensus 477 ~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~--l~~i~~~l~~~l~~------~~~~~~~~~~~~l~~i~ 548 (626)
-...+..|.+.+++.++.++..|+..|..++++||..|... -..++..|..++.. ....++..+++.|....
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45667788888999999999999999999999998765421 23556666666642 24577889999999998
Q ss_pred HHhcc
Q 006912 549 DAVGF 553 (626)
Q Consensus 549 ~~~~~ 553 (626)
.+++.
T Consensus 128 ~~f~~ 132 (171)
T 1juq_A 128 MALPE 132 (171)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 88764
No 134
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=90.59 E-value=11 Score=35.29 Aligned_cols=150 Identities=13% Similarity=0.007 Sum_probs=91.3
Q ss_pred HhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHH-HHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchh
Q 006912 396 AKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (626)
Q Consensus 396 ~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 474 (626)
+.+.+.+ .+.+.-+++.|..+...-.+...+|+.. -+..++....+.+......++.+++++..+...- ..-
T Consensus 125 ekL~~~~---~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm----~gv 197 (339)
T 3dad_A 125 EKLYSSS---GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGM----LGV 197 (339)
T ss_dssp HHHHHCC---HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHH----HHH
T ss_pred HHHhcCC---cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccc----cch
Confidence 3444555 6778888888887443322223333321 3455556666678888999999999988763321 000
Q ss_pred hhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHH------------HHHHHHHHh---hhhHHHHHH
Q 006912 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEII------------LQHLMMAFG---KYQRRNLRI 539 (626)
Q Consensus 475 ~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i------------~~~l~~~l~---~~~~~~~~~ 539 (626)
-....++..+...+.+....|...|...|..+++....... .+..- .+.++..++ ..+.+.+..
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~-lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAP-LFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccch-HHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 01245666666766777788989999999999877532211 11111 234455555 334566668
Q ss_pred HHHHHHHHHHHhcc
Q 006912 540 VYDAIGTLADAVGF 553 (626)
Q Consensus 540 ~~~~l~~i~~~~~~ 553 (626)
++..|..+...++.
T Consensus 277 amtLIN~lL~~apd 290 (339)
T 3dad_A 277 TVTLINKTLAALPD 290 (339)
T ss_dssp HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHhcCCC
Confidence 88888888887764
No 135
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=90.58 E-value=11 Score=35.16 Aligned_cols=142 Identities=11% Similarity=0.088 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHccCcc--c-hhhhHHHHHHHHhhhcCCCchHHHHH-HHHHHHHHHHHHhhhcCCCchhhhHHHHHHHH
Q 006912 409 REAAVLALGAIAEGCIK--G-LYPHLSEIVAFLIPLLDDKFPLIRSI-SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (626)
Q Consensus 409 r~aal~~l~~l~~~~~~--~-~~~~l~~l~~~l~~~l~d~~~~vr~~-a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l 484 (626)
|...+..+..+.....+ . ...+++.++..++.-.++..|..|.. .+.+++.++..+.+.+ .+..+..++.++...
T Consensus 46 KkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i-~~~vp~Il~~VFe~T 124 (321)
T 1w9c_A 46 KRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHI-TAEIPQIFDAVFECT 124 (321)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGG-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 34444444444444321 1 13455556665555555555555542 3334444454444321 012444555555556
Q ss_pred HHHhcc---CCHHHHHHHHHHHHHHHHHhccccc----chHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 006912 485 LKRILD---TNKRVQEAACSAFATLEEEAAEELA----PRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (626)
Q Consensus 485 ~~~l~d---~~~~v~~~a~~al~~l~~~~~~~~~----~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~ 551 (626)
+.++++ +.|..|..=...|..+...|-+.+. +....++..++..++.....+-+..+.++..+.+.+
T Consensus 125 L~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~ 198 (321)
T 1w9c_A 125 LNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNV 198 (321)
T ss_dssp HHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 666764 4699999999999999999865432 356778888888888777766665555555555544
No 136
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=89.86 E-value=10 Score=33.82 Aligned_cols=160 Identities=9% Similarity=-0.004 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhcC-CChH-HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHH
Q 006912 32 DKSQIWQQLQQYSQF-PDFN-NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHI 109 (626)
Q Consensus 32 ~r~~a~~~L~~~~~~-p~~~-~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~v 109 (626)
.|+-|.+........ ..-+ ..+..+.. +..-+.|.+|..+++ .....++++....+...+. .-.+..+
T Consensus 43 lR~laK~~~k~~~~~~~~~~~~~~~~L~~---~~~~E~r~~ai~~l~----~~~k~~~~~~l~~~~~~l~---~~~nWd~ 112 (232)
T 3jxy_A 43 RRQLLKDIIQIHTLPDQKDFQIIIRELWD---LPEREFQAAALDIMQ----KYKKHINETHIPFLEELIV---TKSWWDS 112 (232)
T ss_dssp HHHHHHHHHHHHCCCCGGGHHHHHHHHHT---SSBHHHHHHHHHHHH----HTGGGCCGGGHHHHHHHHT---SSCCHHH
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHhc---CcHHHHHHHHHHHHH----HHHHhCCHHHHHHHHHHHc---cCCChHH
Confidence 455555444444331 1123 33444443 456678888888886 2334466666665554332 2456666
Q ss_pred HHHH-HHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHh
Q 006912 110 RSTV-GTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (626)
Q Consensus 110 r~~~-~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 188 (626)
--.. .++++.+++..+.. +.+.+.+.+.|++.-+|..|+.++... ... .....+++.+...
T Consensus 113 ~D~~a~~~~g~~~~~~p~~----~~~~l~~W~~s~~~w~rR~ai~~~l~~------~~~--------~d~~~~~~~i~~~ 174 (232)
T 3jxy_A 113 VDSIVPTFLGDIFLKHPEL----ISAYIPKWIASDNIWLQRAAILFQLKY------KQK--------MDEELLFWIIGQL 174 (232)
T ss_dssp HHHHTTTHHHHHHHHCGGG----GGGTHHHHHHSSCHHHHHHHHHTTTTC------GGG--------CCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHCHHH----HHHHHHHHhcCCchHHHHHHHHHHHHH------HhC--------CCHHHHHHHHHHh
Confidence 5555 46778887764321 445778888999988888887664211 111 1235566677778
Q ss_pred cCCCChHHHHHHHHHHHHHHhccchHHHHhH
Q 006912 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (626)
Q Consensus 189 l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 219 (626)
+.|++.-|+.++-.+|..+....|+...+.+
T Consensus 175 ~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl 205 (232)
T 3jxy_A 175 HSSKEFFIQKAIGWVLREYAKTNPDVVWEYV 205 (232)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 8899999999999999999887776655444
No 137
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=89.30 E-value=5.2 Score=35.71 Aligned_cols=186 Identities=15% Similarity=0.120 Sum_probs=106.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-----------CCChHHHHHH-HHhhcCC-------CCHHHHHHHHHHH
Q 006912 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ-----------FPDFNNYLAF-ILARAEG-------KSVEIRQAAGLLL 75 (626)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~-----------~p~~~~~l~~-il~~~~~-------~~~~~r~~a~~~l 75 (626)
+.+.|....+.+|+ .|..|-..|.+-.+ +++.+..|++ |+.--+. ....-|-..+..|
T Consensus 3 ~~i~qli~~L~~p~---~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaL 79 (268)
T 2fv2_A 3 EKIYQWINELSSPE---TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALAL 79 (268)
T ss_dssp HHHHHHHHHTSSTT---THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCch---hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHH
Confidence 45678888888887 88888877766433 3344444433 3221110 1122355556666
Q ss_pred HHHHHHhhccCChhHHH-HHHHh----HhhhhhC-----CcHHHHHHHHHHHHHHHhhcCcCc-----hHHHHHHHHHHh
Q 006912 76 KNNLRTAYKSMSPSNQQ-YIKSE----LLPCLGA-----ADRHIRSTVGTIVSVVVQLGGIAG-----WLELLQALVTCL 140 (626)
Q Consensus 76 ~~~i~~~~~~l~~~~~~-~i~~~----L~~~l~~-----~~~~vr~~~~~~l~~i~~~~~~~~-----~~~ll~~l~~~l 140 (626)
-..+..+ |+.+. .++.. |.+.|+- +.+.+|-+...++|.+++.+.++. ..+++|...+.+
T Consensus 80 lQcvAsh-----petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim 154 (268)
T 2fv2_A 80 LQCVASH-----PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM 154 (268)
T ss_dssp HHHHHHC-----TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHcC-----cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence 6666543 44443 33333 3334431 357899999999999998764322 156788888888
Q ss_pred ccCChhHHhHHHHHHHHHhhhchhccccCCCCCc--cchhhhhHHHHH-HhcCCCChHHHHHHHHHHHHHHhc
Q 006912 141 DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA--ECPINIFLPRLL-QFFQSPHTSLRKLSLGSVNQFIML 210 (626)
Q Consensus 141 ~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~--~~~~~~il~~l~-~~l~~~~~~vr~~al~~l~~~~~~ 210 (626)
..++.-.+..|..++.++...-..-. ++=+.. -..+..++..++ +..+++++.+.+.+++|...+.+.
T Consensus 155 e~GselSKtvAtfIlqKIL~dd~GL~--YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 155 ESGSELSKTVATFILQKILLDDTGLA--YICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHSCHHHHHHHHHHHHHHHHSHHHHH--HHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred hhccHHHHHHHHHHHHHHhccchhHH--HHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 88888888888888877765432110 000000 011233333333 334456777777777777776554
No 138
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=88.60 E-value=6.5 Score=31.74 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=55.2
Q ss_pred HhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchh------hhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHH
Q 006912 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY------PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (626)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~------~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (626)
...+..+.+.+++.+ +.+..-|+..+..+..+|+..+. .++..+.. .+...++.|+..++..+..++
T Consensus 41 k~a~rai~Krl~~~n---~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~----l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKD---PHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSN----VLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH----HhccCCHHHHHHHHHHHHHHH
Confidence 366778888898887 88888899999999999976543 34444433 333468999999999999999
Q ss_pred HHHhh
Q 006912 462 KFIVQ 466 (626)
Q Consensus 462 ~~~~~ 466 (626)
..+++
T Consensus 114 ~~f~~ 118 (140)
T 3ldz_A 114 DEFKN 118 (140)
T ss_dssp HHHTT
T ss_pred HHhCC
Confidence 88864
No 139
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=88.15 E-value=17 Score=34.03 Aligned_cols=147 Identities=13% Similarity=0.166 Sum_probs=88.2
Q ss_pred HHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccch--HH
Q 006912 138 TCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS--AL 215 (626)
Q Consensus 138 ~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~--~~ 215 (626)
..+.+.+...+..++.-|..++..-.+... +....+-+..++....+.+......++.+|..++.+... .+
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~-------EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVP-------EFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTCTTHHH-------HHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcchHHHH-------HHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence 334445555566666666664432111110 011233455677777777888899999999998876321 12
Q ss_pred HHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHH-----------HHHHHhhcc---CCChHHHHH
Q 006912 216 FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL-----------FEYMLQVNK---DTDDDVALE 281 (626)
Q Consensus 216 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l-----------~~~~~~~~~---~~~~~v~~~ 281 (626)
.. -+.++..+..+++..+..+.+.+++.|..++...+....-....+ ...++..++ ..+.++...
T Consensus 198 vs-~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 198 VA-HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hC-CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 22 235678888888877888999999999988877653322111111 223334444 467778888
Q ss_pred HHhHHHHhhcc
Q 006912 282 ACEFWHSYFEA 292 (626)
Q Consensus 282 a~~~l~~l~~~ 292 (626)
|+..+..+...
T Consensus 277 amtLIN~lL~~ 287 (339)
T 3dad_A 277 TVTLINKTLAA 287 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88777775444
No 140
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=85.98 E-value=2.7 Score=34.39 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=63.3
Q ss_pred CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCC------CChHHHHHH
Q 006912 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS------PHTSLRKLS 200 (626)
Q Consensus 127 ~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~------~~~~vr~~a 200 (626)
..-.+.+..|.+.+++.++.+...++.+|..+++.++..+..++. -..++..+...+.+ ++..||..+
T Consensus 44 ~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eia------s~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki 117 (149)
T 3g2s_A 44 EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVG------KFRFLNELIKVVSPKYLGSRTSEKVKNKI 117 (149)
T ss_dssp SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHT------SHHHHHHHHHHHCTTTTGGGSCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHh------hHHHHHHHHHHHcccccCCCCCHHHHHHH
Confidence 334567888889999999999999999999999999886543221 26677777777753 578999999
Q ss_pred HHHHHHHHhccch
Q 006912 201 LGSVNQFIMLMPS 213 (626)
Q Consensus 201 l~~l~~~~~~~~~ 213 (626)
+..+..+....+.
T Consensus 118 l~li~~W~~~f~~ 130 (149)
T 3g2s_A 118 LELLYSWTVGLPE 130 (149)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999876543
No 141
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=85.67 E-value=2.9 Score=34.19 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCC------CChHHHHHHHH
Q 006912 129 WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS------PHTSLRKLSLG 202 (626)
Q Consensus 129 ~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~------~~~~vr~~al~ 202 (626)
-.+.+..|.+.+++.++.+...|+.+|..+++.++..+..++. -..++..+...+.. .+..|+..++.
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~eva------s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~ 109 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVA------KFRFLNELIKVLSPKYLGSWATGKVKGRVIE 109 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHT------SHHHHHHHHHTTCCSTTSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHh------hHHHHHHHHHHHccccCCCCCCHHHHHHHHH
Confidence 3566788888899999999999999999999999876543221 26777788877764 47899999999
Q ss_pred HHHHHHhccc
Q 006912 203 SVNQFIMLMP 212 (626)
Q Consensus 203 ~l~~~~~~~~ 212 (626)
.+..+....+
T Consensus 110 li~~W~~~f~ 119 (148)
T 1mhq_A 110 ILFSWTVWFP 119 (148)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHcC
Confidence 9999887654
No 142
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=85.53 E-value=29 Score=34.11 Aligned_cols=255 Identities=11% Similarity=0.067 Sum_probs=131.5
Q ss_pred ChHHHHHHHHHHHHHHhc---cchHHHHhHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCcc---chhhhHHHHHH
Q 006912 193 HTSLRKLSLGSVNQFIML---MPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS---FLEPHLRNLFE 265 (626)
Q Consensus 193 ~~~vr~~al~~l~~~~~~---~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~l~~l~~ 265 (626)
++.=-..+.+.|..++.. .|.....+++ .++..|+.++..+|+.-|.....+|..+..+... .+...+..++.
T Consensus 130 sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~ 209 (449)
T 2npp_B 130 AWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFY 209 (449)
T ss_dssp THHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555666666543 1222222222 4677888888888888888888888877766433 23333333332
Q ss_pred HHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCccccc
Q 006912 266 YMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHS 345 (626)
Q Consensus 266 ~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~ 345 (626)
-.+....... -....+++++++......+ .-.+|..-+..++++..+...
T Consensus 210 ~fi~e~e~~n--GIaeLLeilgSIinGfa~P-LKeehk~fl~~vLlPLhk~~~--------------------------- 259 (449)
T 2npp_B 210 RFIYETEHHN--GIAELLEILGSIINGFALP-LKEEHKIFLLKVLLPLHKVKS--------------------------- 259 (449)
T ss_dssp HHHHTCSCCS--CHHHHHHHHHHHHSSCCSS-CCHHHHHHHHHTTGGGGGSSC---------------------------
T ss_pred HHhcccCCCC--CHHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHHHHccch---------------------------
Confidence 2222211111 1345677788877652111 001222222233333322110
Q ss_pred ccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc-
Q 006912 346 SRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI- 424 (626)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~- 424 (626)
. ......-..|+..+...-+ .....++..+.++-=-.+ ......-+.-+..+.+.+.
T Consensus 260 ----------------l--~~y~~qL~ycv~qf~eKDp-~L~~~vi~~LLk~WP~tn---s~KevlFL~eleeile~~~~ 317 (449)
T 2npp_B 260 ----------------L--SVYHPQLAYCVVQFLEKDS-TLTEPVVMALLKYWPKTH---SPKEVMFLNELEEILDVIEP 317 (449)
T ss_dssp ----------------G--GGTHHHHHHHHHHHHHHCG-GGHHHHHHHHHHTCCSSC---HHHHHHHHHHHHHHHTTCCH
T ss_pred ----------------h--HHhHHHHHHHHHHHHhcCc-HhHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHHhCCH
Confidence 0 0011223344444443333 222233333332222222 3333344556777777663
Q ss_pred cchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHH--HHHHHhhhcCCCchhhhHHHHHHHHHHHhccC-----CHHHHH
Q 006912 425 KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSR--FSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-----NKRVQE 497 (626)
Q Consensus 425 ~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~-----~~~v~~ 497 (626)
..+......++..+..++.++|..|...|+....+ +...+ .++...++|.++..+... +..||.
T Consensus 318 ~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li---------~~n~~~IlPii~p~L~~~s~~HWn~~V~~ 388 (449)
T 2npp_B 318 SEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI---------SDNAAKILPIMFPSLYRNSKTHWNKTIHG 388 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH---------HTTHHHHHHHHHHHHTSCTTCCSSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHH---------HhchhhhHHhhHHHHHHHHHHhcCHHHHH
Confidence 45566777788899999999999999998765432 22222 233445556666655322 578999
Q ss_pred HHHHHHHHHHH
Q 006912 498 AACSAFATLEE 508 (626)
Q Consensus 498 ~a~~al~~l~~ 508 (626)
.|..++..+.+
T Consensus 389 la~~vlk~l~e 399 (449)
T 2npp_B 389 LIYNALKLFME 399 (449)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999886654
No 143
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=83.79 E-value=15 Score=30.41 Aligned_cols=95 Identities=13% Similarity=0.046 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhh-HHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-FEKVLMGL 484 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~ll~~l 484 (626)
|..-...+..+..-. ..-.+.+..|...+++.++.++..|+..+..+.+.++.. .+... -..++..+
T Consensus 33 w~~~leicD~I~~~~--------~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~----Fh~evas~~Fl~el 100 (163)
T 1x5b_A 33 WSLIMDICDKVGSTP--------NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKI----FHLEVCSRDFATEV 100 (163)
T ss_dssp HHHHHHHHHHHHHSS--------SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH----HHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--------ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH----HHHHHhhHHHHHHH
Confidence 876655555443311 123446778888889999999999999999999887542 12111 13344444
Q ss_pred HHHhcc-CCHHHHHHHHHHHHHHHHHhcc
Q 006912 485 LKRILD-TNKRVQEAACSAFATLEEEAAE 512 (626)
Q Consensus 485 ~~~l~d-~~~~v~~~a~~al~~l~~~~~~ 512 (626)
.+.+.. .++.|+..+...+......++.
T Consensus 101 ~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 101 RAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 444443 5689999999999999988764
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=83.36 E-value=15 Score=32.47 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccch--HHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhcc
Q 006912 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAVGF 553 (626)
Q Consensus 477 ~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~--l~~i~~~l~~~l~~-~~~~~~~~~~~~l~~i~~~~~~ 553 (626)
-...+..|.+.+++.++.++..|+..|..++++||..+..- -..+++.|..++.. .+..+++.+++.|.....+++.
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 36677888889999999999999999999999998754321 12344444444443 3456788999999999888865
Q ss_pred c
Q 006912 554 E 554 (626)
Q Consensus 554 ~ 554 (626)
+
T Consensus 123 ~ 123 (226)
T 3zyq_A 123 E 123 (226)
T ss_dssp C
T ss_pred C
Confidence 4
No 145
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=82.72 E-value=36 Score=32.90 Aligned_cols=272 Identities=10% Similarity=0.055 Sum_probs=139.3
Q ss_pred ChHHHHHHHHHHHHHHhc---cchHHHHhHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCcc---chhhhHHHHHH
Q 006912 193 HTSLRKLSLGSVNQFIML---MPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS---FLEPHLRNLFE 265 (626)
Q Consensus 193 ~~~vr~~al~~l~~~~~~---~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~l~~l~~ 265 (626)
++.=...+.+.|..++.. .|.....+++ .++..|+.++..+|+.-|...-.+|..+..+... .+...+..++.
T Consensus 97 sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~ 176 (403)
T 3fga_B 97 AWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFY 176 (403)
T ss_dssp THHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 333344555555555543 1222222222 3577788888989999888888888887766553 23333333332
Q ss_pred HHHhhccCCChHHHHHHHhHHHHhhccCCcchhHHhhhhhhHHHHhhhcccCchhhhhhhhhccCCCCCCCCCCCccccc
Q 006912 266 YMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHS 345 (626)
Q Consensus 266 ~~~~~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~l~~li~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~ 345 (626)
..+..... ... ....+++++++......+- -.+|..-+..++++..+...
T Consensus 177 ~fiye~e~-~~G-IaeLLeilgsIinGfa~PL-keehk~fl~~vLlPLHk~~~--------------------------- 226 (403)
T 3fga_B 177 RFIYETEH-HNG-IAELLEILGSIINGFALPL-KEEHKIFLLKVLLPLHKVKS--------------------------- 226 (403)
T ss_dssp HHHHTTCC-CTT-HHHHHHHHHHHHHHCCSSC-CHHHHHHHHHTTTGGGGSTT---------------------------
T ss_pred HHhcCccc-CCC-HHHHHHHHHHHHcccCCCc-hHHHHHHHHHHHHHHHcCCc---------------------------
Confidence 22221111 111 2346677777765521110 01122222233333222100
Q ss_pred ccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc-
Q 006912 346 SRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI- 424 (626)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~- 424 (626)
. ......-..|+..+...-+. ....++..+.+.-=..+ ......-+.-+..+.+.+.
T Consensus 227 ----------------~--~~y~~qL~ycv~qf~eKDp~-L~~~vi~~LLk~WP~tn---s~KevlFL~Ele~iLe~~~~ 284 (403)
T 3fga_B 227 ----------------L--SVYHPQLAYCVVQFLEKDST-LTEPVVMALLKYWPKTH---SPKEVMFLNELEEILDVIEP 284 (403)
T ss_dssp ----------------G--GGTHHHHHHHHHHHHHHCGG-GHHHHHHHHHHTCCSSC---HHHHHHHHHHHHHHHTTCCH
T ss_pred ----------------c--hhhHHHHHHHHHHHHHhCch-hHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHHHHhCCH
Confidence 0 01112234444444433332 22223333322222222 3334444555777777664
Q ss_pred cchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHH--HHHHHhhhcCCCchhhhHHHHHHHHHHHhccC-CHHHHHHHHH
Q 006912 425 KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSR--FSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NKRVQEAACS 501 (626)
Q Consensus 425 ~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~-~~~v~~~a~~ 501 (626)
..+......++..+..++.++|..|...|+....+ +...+.+ .....++-+++.+.+..... +..|+..+..
T Consensus 285 ~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~-----n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~ 359 (403)
T 3fga_B 285 SEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD-----NAAKILPIMFPSLYRNSKTHWNKTIHGLIYN 359 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT-----THHHHHHHHHHHHHHTTSCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 45567777788889999999999999988765422 2222221 12344455555555544433 6899999999
Q ss_pred HHHHHHHHhcccccchHHHH
Q 006912 502 AFATLEEEAAEELAPRLEII 521 (626)
Q Consensus 502 al~~l~~~~~~~~~~~l~~i 521 (626)
++..+.+--+..+.......
T Consensus 360 vlk~l~e~d~~lF~~~~~~~ 379 (403)
T 3fga_B 360 ALKLFMEMNQKLFDDCTQQF 379 (403)
T ss_dssp HHHHHHTTSCCCCCTTHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHH
Confidence 99988765555555554443
No 146
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=81.63 E-value=13 Score=33.09 Aligned_cols=155 Identities=9% Similarity=0.019 Sum_probs=91.6
Q ss_pred hhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhc-cCChhHHhHH-HHHHHHHhhhchhccccCCCCCccc
Q 006912 99 LPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD-SNDINHMEGA-MDALSKICEDIPQVLDSDVPGLAEC 176 (626)
Q Consensus 99 ~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~-~~~~~~r~~~-l~~l~~l~~~~~~~~~~~~~~~~~~ 176 (626)
..+..++....|-.+...+....+...+.. ++.+...+. -++|.+.... -.+++.++...+..
T Consensus 67 ~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~----l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~~----------- 131 (232)
T 3jxy_A 67 RELWDLPEREFQAAALDIMQKYKKHINETH----IPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPEL----------- 131 (232)
T ss_dssp HHHHTSSBHHHHHHHHHHHHHTGGGCCGGG----HHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGGG-----------
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHHH-----------
Confidence 334455666677766665543332222222 333334443 3677766543 35556666654431
Q ss_pred hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccch
Q 006912 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (626)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 256 (626)
..+.+..-..+++.-+|..|+.++.... .......++..+...+.+++.-+++.+-.+|..+....++.+
T Consensus 132 ----~~~~l~~W~~s~~~w~rR~ai~~~l~~~------~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v 201 (232)
T 3jxy_A 132 ----ISAYIPKWIASDNIWLQRAAILFQLKYK------QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVV 201 (232)
T ss_dssp ----GGGTHHHHHHSSCHHHHHHHHHTTTTCG------GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ----HHHHHHHHhcCCchHHHHHHHHHHHHHH------hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 2334666778888888888876653221 112223445666677888999999999999999999998877
Q ss_pred hhhHHHHHHHHHhhccCCChHHHHHHHhHHH
Q 006912 257 EPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (626)
Q Consensus 257 ~~~l~~l~~~~~~~~~~~~~~v~~~a~~~l~ 287 (626)
.+++.. - .-++-+...|++.+.
T Consensus 202 ~~fl~~-------~--~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 202 WEYVQN-------N--ELAPLSKREAIKHIK 223 (232)
T ss_dssp HHHHHH-------S--CCCHHHHHHHTTTTH
T ss_pred HHHHHH-------C--CCCHHHHHHHHHhcc
Confidence 666543 1 233445666665543
No 147
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=81.20 E-value=20 Score=29.54 Aligned_cols=78 Identities=18% Similarity=0.107 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhcccccchH--HHHHHH-HHHHHh-h--hhHHHHHHHHHHHHHHH
Q 006912 476 QFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQH-LMMAFG-K--YQRRNLRIVYDAIGTLA 548 (626)
Q Consensus 476 ~~~~ll~~l~~~l~-d~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~i~~~-l~~~l~-~--~~~~~~~~~~~~l~~i~ 548 (626)
.-...+..+.+.++ +.++.++..|+..|..++++||..+...+ ..+++. |...+. + ....+++.+++.+....
T Consensus 50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 34567778888887 57899999999999999999987654321 245554 455553 2 23467778899998888
Q ss_pred HHhcc
Q 006912 549 DAVGF 553 (626)
Q Consensus 549 ~~~~~ 553 (626)
.+++.
T Consensus 130 ~~f~~ 134 (157)
T 1elk_A 130 DAFRS 134 (157)
T ss_dssp HHHTT
T ss_pred HHcCC
Confidence 88764
No 148
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=79.78 E-value=31 Score=30.27 Aligned_cols=157 Identities=12% Similarity=0.015 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhcCCC--hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhhhh-CCcHH
Q 006912 32 DKSQIWQQLQQYSQFPD--FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-AADRH 108 (626)
Q Consensus 32 ~r~~a~~~L~~~~~~p~--~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~-~~~~~ 108 (626)
.|+-|.+........|. -+..+..+.. +..-+.|..|+.++...- ..+.++....+. ..+. -....
T Consensus 37 lR~laK~~~k~~~~~~~~~~~~~~~~L~~---s~~~E~r~la~~~l~~~~----~~~~~~~l~~~~----~~l~~~~nWd 105 (220)
T 2b6c_A 37 RQALSKQLLKESHTWPKEKLCQEIEAYYQ---KTEREYQYVAIDLALQNV----QRFSLEEVVAFK----AYVPQKAWWD 105 (220)
T ss_dssp HHHHTHHHHHHHTTSCHHHHHHHHHHHHT---SSSHHHHHHHHHHHHHTG----GGCCHHHHHHGG----GGTTTTCSHH
T ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHc---CchhHHHHHHHHHHHHHH----hhCCHHHHHHHH----HHhccCCcHH
Confidence 56666655544322231 2233333332 556788999988886432 233443332222 2222 45667
Q ss_pred HHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHh
Q 006912 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (626)
Q Consensus 109 vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 188 (626)
+--..|.+++.++...+ ..+.+.+.+.+.|++.-+|..|+.++... .. ......+++.+...
T Consensus 106 ~~D~~a~~~~~~~~~~~----~~~~~~i~~W~~s~~~w~rR~ai~~~l~~----~~----------~~~~~~~~~i~~~~ 167 (220)
T 2b6c_A 106 SVDAWRKFFGSWVALHL----TELPTIFALFYGAENFWNRRVALNLQLML----KE----------KTNQDLLKKAIIYD 167 (220)
T ss_dssp HHHHHHHHHHHHHHHSG----GGHHHHHHHHTTCSSHHHHHHHHHTTTTC----GG----------GCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCh----HHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HH----------CCCHHHHHHHHHHh
Confidence 77777777888876532 12456788899999988888887755211 11 12235667767778
Q ss_pred cCCCChHHHHHHHHHHHHHHhccchHHHH
Q 006912 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFV 217 (626)
Q Consensus 189 l~~~~~~vr~~al~~l~~~~~~~~~~~~~ 217 (626)
+.|++.-|++++-.+|..+....|+...+
T Consensus 168 ~~d~~~yV~kavgW~Lr~~~k~~~~~v~~ 196 (220)
T 2b6c_A 168 RTTEEFFIQKAIGWSLRQYSKTNPQWVEE 196 (220)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 89999999999999999998776655443
No 149
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=79.27 E-value=15 Score=32.28 Aligned_cols=79 Identities=6% Similarity=0.011 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccch--HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhc
Q 006912 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGKY-QRRNLRIVYDAIGTLADAVG 552 (626)
Q Consensus 476 ~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~--l~~i~~~l~~~l~~~-~~~~~~~~~~~l~~i~~~~~ 552 (626)
.-...+..|.+.+++.++.++..|+..|..++++||..+... -..+++.|..++.+. ...++..+++.+.....+.+
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 345667778888999999999999999999999998654321 123444444445433 45677789999999888876
Q ss_pred cc
Q 006912 553 FE 554 (626)
Q Consensus 553 ~~ 554 (626)
..
T Consensus 119 ~~ 120 (220)
T 1dvp_A 119 SS 120 (220)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 150
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=79.05 E-value=33 Score=30.11 Aligned_cols=139 Identities=10% Similarity=0.029 Sum_probs=91.3
Q ss_pred hHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhcc-CChhHHhHHHHHHHHHhhhchhccccCCCCCcc
Q 006912 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (626)
Q Consensus 97 ~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~-~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~ 175 (626)
.+..+..++....|..++.+++...+.. .++-++.+...+.. ++|.+......+++.++...+
T Consensus 59 ~~~~L~~s~~~E~r~la~~~l~~~~~~~----~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~------------ 122 (220)
T 2b6c_A 59 EIEAYYQKTEREYQYVAIDLALQNVQRF----SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL------------ 122 (220)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHTGGGC----CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG------------
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHhhC----CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh------------
Confidence 3334445566777777777776544321 24556666666654 577777655556666665433
Q ss_pred chhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCccc
Q 006912 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (626)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 255 (626)
..+.+.+..-..+++.-+|..|+.++..... ......+++.+-..+.|++.-+++.+...|..+....++.
T Consensus 123 ---~~~~~~i~~W~~s~~~w~rR~ai~~~l~~~~------~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~ 193 (220)
T 2b6c_A 123 ---TELPTIFALFYGAENFWNRRVALNLQLMLKE------KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQW 193 (220)
T ss_dssp ---GGHHHHHHHHTTCSSHHHHHHHHHTTTTCGG------GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHH
Confidence 2345567788899999899988875532221 1223344666666888999999999999999999998887
Q ss_pred hhhhH
Q 006912 256 LEPHL 260 (626)
Q Consensus 256 ~~~~l 260 (626)
+.+++
T Consensus 194 v~~fl 198 (220)
T 2b6c_A 194 VEELM 198 (220)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66555
No 151
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=77.97 E-value=31 Score=31.74 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=80.9
Q ss_pred chHHHHHHHHHHhccC------ChhHHhHHHHHHHHHhhhchhccccCCCCCccchhh---hhHHHHHHhcCCCChHHHH
Q 006912 128 GWLELLQALVTCLDSN------DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPIN---IFLPRLLQFFQSPHTSLRK 198 (626)
Q Consensus 128 ~~~~ll~~l~~~l~~~------~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~---~il~~l~~~l~~~~~~vr~ 198 (626)
.+..=+..+...+.++ +......++..|..+...+...+ +.+. .++..+. +.....+.+|.
T Consensus 19 eFs~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~---------KI~~~ef~lL~nL~-~~~~~~~~~rE 88 (315)
T 3qml_C 19 EFSSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGY---------KIITHEFALLANLS-LNENLPLTLRE 88 (315)
T ss_dssp TTHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHH---------HHHHHHHHHHHHHH-HCTTSCHHHHH
T ss_pred chHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhh---------HHHhCcHHHHHHHH-hhccCChhHHH
Confidence 3444444555555544 33344566666655554443321 1112 2233333 33445678999
Q ss_pred HHHHHHHHHHhccchHHHH---hHHHHHHHHH----HhcCC---CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHH
Q 006912 199 LSLGSVNQFIMLMPSALFV---SMDQYLQGLF----LLSND---PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYML 268 (626)
Q Consensus 199 ~al~~l~~~~~~~~~~~~~---~~~~~l~~l~----~~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~ 268 (626)
.|...+++.++..|+.+.. ..+.++..++ ..... ...-+.+..+.+|..++.....+....+..+...+-
T Consensus 89 ~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~~~~m~~L~~ly~ 168 (315)
T 3qml_C 89 LSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLPIYSTVVLQNVYE 168 (315)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhhhccHHHHHHHHc
Confidence 9999999999998865442 2223333333 33222 233566777788888877654443333344444332
Q ss_pred hhccCCChHHHHHHHhHHHHhh
Q 006912 269 QVNKDTDDDVALEACEFWHSYF 290 (626)
Q Consensus 269 ~~~~~~~~~v~~~a~~~l~~l~ 290 (626)
.. ..+..++..+++++..+-
T Consensus 169 -~~-~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 169 -RN-NKDKQLQIKVLELISKIL 188 (315)
T ss_dssp -HT-TTCHHHHHHHHHHHHHHH
T ss_pred -cC-CCCHHHHHHHHHHHHHHc
Confidence 22 446777777777766654
No 152
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=77.97 E-value=24 Score=27.95 Aligned_cols=104 Identities=9% Similarity=0.044 Sum_probs=63.2
Q ss_pred hHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 006912 430 HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (626)
Q Consensus 430 ~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (626)
.++..+...+..|.++...++..+.|++. +..+-..++..+.+.+....+.-|...+..+..++.+
T Consensus 5 ~~e~~l~~~L~~L~~s~~sI~~~s~w~l~--------------h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~n 70 (132)
T 4flb_A 5 ALESSLDRKFQSVTNTMESIQGLSSWCIE--------------NKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQN 70 (132)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHH--------------TGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Confidence 34455666777777777778877777653 2344566777777777777788889999999999998
Q ss_pred hccc-ccchHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Q 006912 510 AAEE-LAPRLEIILQHLMMAFGKY-QRRNLRIVYDAIGTL 547 (626)
Q Consensus 510 ~~~~-~~~~l~~i~~~l~~~l~~~-~~~~~~~~~~~l~~i 547 (626)
++.. ...|.+.+-+.+...+... +++.+..+..++...
T Consensus 71 s~~~~~~~f~~~f~~~l~~~~~~~~~~~~~~kl~~ll~iW 110 (132)
T 4flb_A 71 CKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERIFKIW 110 (132)
T ss_dssp TTTTTCTHHHHHHHTTHHHHHHTTCSTTTHHHHHHHHHHH
T ss_pred hcccChHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8532 2234444444444333332 222333444444443
No 153
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=77.27 E-value=91 Score=35.44 Aligned_cols=223 Identities=9% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhc--CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH-------------HH
Q 006912 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-------------RT 81 (626)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i-------------~~ 81 (626)
+...+.....-.+. +-.+=.+.+..... .......++-++.- +.+...|..|-..+++.| -.
T Consensus 312 ild~lks~l~~~k~-i~eAwlK~I~~~~~~~~hk~~Dl~vLlii~--s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~ 388 (1323)
T 3s4w_B 312 VFDVIKSAIRYEKT-ISEAWFKAIERIESAAEHKSLDVVMLLIIY--STSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFS 388 (1323)
T ss_dssp HHHHHHHHHHHCHH-HHHHHHHHHHHGGGSTTCCTHHHHHHHHHH--HHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhcChH-HHHHHHHHHhCCCcccccchhHHHHHHHHH--cCCchhHHHHHHHHHHHHHcCCchHHHHHHHHH
Q ss_pred hhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhh
Q 006912 82 AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (626)
Q Consensus 82 ~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~ 161 (626)
.+..+-.+.-..+....-.++.+.++.+|..++.+...+++.....+-++++..|...+.+++......|+.+|..+++.
T Consensus 389 ~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~ 468 (1323)
T 3s4w_B 389 THYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVL 468 (1323)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhc
Q ss_pred chhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHH-hcCCCCHHHHHH
Q 006912 162 IPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL-LSNDPSAEVRKL 240 (626)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~ 240 (626)
.+..+.+. ..++..++..+.+-+..--...+..|+.++-..+..-...+.+=+..+++ .+..++..+++.
T Consensus 469 ~~~~l~~~---------a~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~Kri 539 (1323)
T 3s4w_B 469 NASAMRLN---------AAFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLI 539 (1323)
T ss_dssp CHHHHHHT---------HHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred CHHHHhHH---------HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhh
Q ss_pred HHHHHHHHHhh
Q 006912 241 VCAAFNLLIEV 251 (626)
Q Consensus 241 ~~~~l~~l~~~ 251 (626)
.+-.-..++..
T Consensus 540 GIIGav~~v~~ 550 (1323)
T 3s4w_B 540 GIIGAVTMAGI 550 (1323)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
No 154
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=75.70 E-value=26 Score=28.85 Aligned_cols=75 Identities=7% Similarity=0.197 Sum_probs=53.6
Q ss_pred HhHHHHHHHhhcC-CCCCChhHHHHHHHHHHHHHccCccchh------hhHHH-HHHHHhhhcCCCchHHHHHHHHHHHH
Q 006912 388 PTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLY------PHLSE-IVAFLIPLLDDKFPLIRSISCWTLSR 459 (626)
Q Consensus 388 ~~l~~~l~~~l~~-~~~~~~~~r~aal~~l~~l~~~~~~~~~------~~l~~-l~~~l~~~l~d~~~~vr~~a~~~l~~ 459 (626)
...+..+.+.+++ .+ +.+..-|+..+..+..+|+..+. +++.. ++..+.+ -.+++..||..++..+..
T Consensus 52 k~a~ral~krl~~~~n---~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~-k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 52 KDALRAVKKRIVGNKN---FHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILP-KNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp HHHHHHHHHHHTTCCC---HHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHST-TTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC---HHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHH
Confidence 3566778888874 66 88999999999999999976553 24444 2322211 124567999999999999
Q ss_pred HHHHHhh
Q 006912 460 FSKFIVQ 466 (626)
Q Consensus 460 l~~~~~~ 466 (626)
++..+..
T Consensus 128 W~~~f~~ 134 (157)
T 1elk_A 128 WADAFRS 134 (157)
T ss_dssp HHHHHTT
T ss_pred HHHHcCC
Confidence 9988763
No 155
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=73.90 E-value=18 Score=28.99 Aligned_cols=75 Identities=12% Similarity=0.037 Sum_probs=49.0
Q ss_pred CcchHHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcC-----C------CchHHHH
Q 006912 383 GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-----D------KFPLIRS 451 (626)
Q Consensus 383 ~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~-----d------~~~~vr~ 451 (626)
.......+++++.+.+++.+ |.++.-++.+|..++....+.+...+..=...|-.+.. | ....||.
T Consensus 43 ~~~~~~eim~~L~kRL~~k~---~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~ 119 (140)
T 1vdy_A 43 HVSIVKEFSEFILKRLDNKS---PIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRE 119 (140)
T ss_dssp CHHHHHHHHHHHHHHHTSSS---HHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHH
T ss_pred chhHHHHHHHHHHHHhcCCC---cceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHH
Confidence 33556789999999999988 99999999999999876654443333322222222211 2 2268888
Q ss_pred HHHHHHHHH
Q 006912 452 ISCWTLSRF 460 (626)
Q Consensus 452 ~a~~~l~~l 460 (626)
.|-.++.-+
T Consensus 120 ~AkEl~~ll 128 (140)
T 1vdy_A 120 TAHETISAI 128 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 886655443
No 156
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=73.54 E-value=59 Score=30.29 Aligned_cols=139 Identities=14% Similarity=0.218 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhcCcch---HHhH----HHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccch----hhhHHHHHHHHh
Q 006912 371 SAAALDVLSNVFGDEI---LPTL----MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL----YPHLSEIVAFLI 439 (626)
Q Consensus 371 a~~~l~~l~~~~~~~~---~~~l----~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~----~~~l~~l~~~l~ 439 (626)
...++..+...+++.+ +|.+ ...-..+++..-.+-|..|.+-...+..+..+|...+ .+.+..++..++
T Consensus 94 VL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsii 173 (321)
T 1w9c_A 94 VLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSII 173 (321)
T ss_dssp HHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH
Confidence 4455666666665533 2222 2223345554323448999999999999998886543 255677889999
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHhhh--cCCCchhhhHHHHHHHHHHHhccCCH----HHHHHHHHHHHHHHHH
Q 006912 440 PLLDDKFPLIRSISCWTLSRFSKFIVQD--IGHQNGREQFEKVLMGLLKRILDTNK----RVQEAACSAFATLEEE 509 (626)
Q Consensus 440 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~~~~ll~~l~~~l~d~~~----~v~~~a~~al~~l~~~ 509 (626)
..++|+++.|...++.++-.+...+... ........|...++..++..+.|+.+ ..+.....-|-.+++.
T Consensus 174 Wa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~ 249 (321)
T 1w9c_A 174 WAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 249 (321)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHHc
Confidence 9999999999999999888877766421 01112456778888888888888742 2333334444444443
No 157
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=70.44 E-value=40 Score=29.72 Aligned_cols=95 Identities=12% Similarity=0.090 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhc-CCCchhhhHHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI-GHQNGREQFEKVLMGL 484 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~ll~~l 484 (626)
|..-...+..+.. . . ..-.+.+..|...+++.++.++..|+..+..+.++++... ......++++ .+
T Consensus 26 w~~ileicD~I~~---~-~----~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~----~l 93 (226)
T 3zyq_A 26 WESILQICDLIRQ---G-D----TQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTME----EL 93 (226)
T ss_dssp HHHHHHHHHHHHT---T-S----SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHH----HH
T ss_pred HHHHHHHHHHHhC---C-C----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHH----HH
Confidence 7766555555432 1 1 1124567888889999999999999999999998876521 0001233333 33
Q ss_pred HHHhc-cCCHHHHHHHHHHHHHHHHHhcc
Q 006912 485 LKRIL-DTNKRVQEAACSAFATLEEEAAE 512 (626)
Q Consensus 485 ~~~l~-d~~~~v~~~a~~al~~l~~~~~~ 512 (626)
.+.++ ..++.|+..++..|......++.
T Consensus 94 ~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 94 KDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 33333 34689999999999999988754
No 158
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=69.39 E-value=72 Score=29.58 Aligned_cols=99 Identities=13% Similarity=-0.007 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHccCc--cchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHH
Q 006912 406 WKDREAAVLALGAIAEGCI--KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~--~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 483 (626)
+..+..+++++..+...-. ..+......+++.+...+.+++..+|.++...+-+++-..... ...+....++..
T Consensus 162 p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~----~~~~~~~~ll~~ 237 (304)
T 3ebb_A 162 PANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD----HNIEGKAQCLSL 237 (304)
T ss_dssp HHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS----CCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc----CCchHHHHHHHH
Confidence 5556666666666555432 1223456678888888877889999999999988888776542 111233444554
Q ss_pred HHHHhcc-CCHHHHHHHHHHHHHHHH
Q 006912 484 LLKRILD-TNKRVQEAACSAFATLEE 508 (626)
Q Consensus 484 l~~~l~d-~~~~v~~~a~~al~~l~~ 508 (626)
+.+.+.. .++....+++-||++++.
T Consensus 238 l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 238 ISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 5454442 467788888888888874
No 159
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=68.80 E-value=39 Score=26.75 Aligned_cols=73 Identities=5% Similarity=0.057 Sum_probs=48.6
Q ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcc
Q 006912 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (626)
Q Consensus 433 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~ 512 (626)
+.+...+..|.++.+.++..+.|++. +..+...++..+.+.+....+.-|...+..+..++.++..
T Consensus 7 ~~l~~~L~~L~~s~~sI~~~s~w~l~--------------~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~ 72 (135)
T 4fu3_A 7 SALEKKLSELSNSQQSVQTLSLWLIH--------------HRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKR 72 (135)
T ss_dssp HHHHHHHHHCCSSTTHHHHHHHHHHH--------------TGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHh
Confidence 34555566777777888888777763 2334456666667777665666688899999999988854
Q ss_pred cccchHH
Q 006912 513 ELAPRLE 519 (626)
Q Consensus 513 ~~~~~l~ 519 (626)
.-.+|..
T Consensus 73 ~~~~y~~ 79 (135)
T 4fu3_A 73 KGPEFTR 79 (135)
T ss_dssp TCSHHHH
T ss_pred cCHHHHH
Confidence 3333433
No 160
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=65.99 E-value=51 Score=26.58 Aligned_cols=102 Identities=8% Similarity=0.061 Sum_probs=58.6
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhccc----
Q 006912 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE---- 513 (626)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~---- 513 (626)
-+..|.|..+.+-...+..|+.+|.. ...+...++..+.+.+....+.-+..++..+..++++++..
T Consensus 10 ~L~~L~~~k~~~S~~~I~~LT~~a~~---------~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~ 80 (145)
T 3d9j_A 10 ELYSLNDYKPPISKAKMTQITKAAIK---------AIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQE 80 (145)
T ss_dssp HHHGGGGSCSSCCHHHHHHHHHHHHH---------TGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCc
Confidence 34444443322333444445555542 23455667777777777667788899999999999888642
Q ss_pred ccchHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHH
Q 006912 514 LAPRLEIILQHLMMAFGK---YQRRNLRIVYDAIGTLA 548 (626)
Q Consensus 514 ~~~~l~~i~~~l~~~l~~---~~~~~~~~~~~~l~~i~ 548 (626)
..+|.+.+.+.|...+.. ..+..+..+.+.+.+.-
T Consensus 81 ~~~f~~~F~~~L~~~f~~~~~~~~~~r~kl~rLl~iW~ 118 (145)
T 3d9j_A 81 KDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQ 118 (145)
T ss_dssp TCSHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 236666666655554432 12334444555555543
No 161
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=65.87 E-value=50 Score=29.50 Aligned_cols=99 Identities=9% Similarity=0.103 Sum_probs=65.8
Q ss_pred ChHHHHHHHHHHHHHHhccchHHHHhH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhC---------ccchhhhHH
Q 006912 193 HTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR---------PSFLEPHLR 261 (626)
Q Consensus 193 ~~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~---------~~~~~~~l~ 261 (626)
.+.+|..++..++.++.....+...++ .+++|...+.+..+++-.+..|.-.+.++.... ++.|.. +.
T Consensus 115 fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~a-v~ 193 (268)
T 2fv2_A 115 FEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSH-VA 193 (268)
T ss_dssp HHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHH-HH
T ss_pred chhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHH-HH
Confidence 468999999999999987655555443 257888888887777777776766666655432 233322 22
Q ss_pred HHHHHHH-hhccCCChHHHHHHHhHHHHhhcc
Q 006912 262 NLFEYML-QVNKDTDDDVALEACEFWHSYFEA 292 (626)
Q Consensus 262 ~l~~~~~-~~~~~~~~~v~~~a~~~l~~l~~~ 292 (626)
.++..++ ...++.+.......+.+...++++
T Consensus 194 ~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 194 MILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 3333333 345567777788888988888886
No 162
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=64.40 E-value=29 Score=27.81 Aligned_cols=73 Identities=14% Similarity=0.213 Sum_probs=51.5
Q ss_pred hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhccchHHHHhHHH---HHHHHHHhcCCCC--------HHHHHHHHHHHH
Q 006912 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQ---YLQGLFLLSNDPS--------AEVRKLVCAAFN 246 (626)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~---~l~~l~~~~~~~~--------~~~~~~~~~~l~ 246 (626)
...++..|.+-|++.++.++..|+++|..++..-++.+...+.. +++.+.++-..++ ..||..|-+++.
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 47888999999999999999999999999998777766655442 2333333222112 468888777776
Q ss_pred HHHh
Q 006912 247 LLIE 250 (626)
Q Consensus 247 ~l~~ 250 (626)
.+..
T Consensus 127 ll~d 130 (140)
T 1vdy_A 127 AIFS 130 (140)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 6654
No 163
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=61.44 E-value=69 Score=28.00 Aligned_cols=77 Identities=12% Similarity=0.021 Sum_probs=54.2
Q ss_pred HHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhc-CCCchhhhHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Q 006912 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI-GHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEE 509 (626)
Q Consensus 432 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~ll~~l~~~l~-d~~~~v~~~a~~al~~l~~~ 509 (626)
.+.+..|...+++.++.++..|+..+..+.++++... ......++++ .+.+.+. ..++.|+..+...+......
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~----~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCE----MFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHH----HHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHH----HHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 4567778888899999999999999999998875421 0001223333 3334333 34689999999999999888
Q ss_pred hcc
Q 006912 510 AAE 512 (626)
Q Consensus 510 ~~~ 512 (626)
++.
T Consensus 117 f~~ 119 (220)
T 1dvp_A 117 FRS 119 (220)
T ss_dssp TTT
T ss_pred hcc
Confidence 754
No 164
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=58.61 E-value=45 Score=29.56 Aligned_cols=74 Identities=8% Similarity=-0.022 Sum_probs=49.9
Q ss_pred hHHHHHHHhhcCCCCCChhHHHHHHHHHH-HHHccCccch-hhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHh
Q 006912 389 TLMPVIQAKLSASGDEAWKDREAAVLALG-AIAEGCIKGL-YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (626)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~-~l~~~~~~~~-~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (626)
...+.+...+.|++ .-.|.+++.+-+ .++....+.+ ...+..++..+...+.|++..|+.+..|+|..++...+
T Consensus 108 ~~~~~~~~W~~s~~---~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 108 IAQDVADKWIASGD---ELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp SHHHHHHHHHHSCC---HHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHcCcH---HHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCH
Confidence 45667778888877 444555555221 1122222221 35777788888889999999999999999998887643
No 165
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=58.57 E-value=70 Score=25.71 Aligned_cols=77 Identities=5% Similarity=-0.026 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006912 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLE-IILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (626)
Q Consensus 474 ~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~ 550 (626)
..+-..++..+.+.+....|.-+..++..+..+++++|..+.+++. .+.+.+.......++..+..+.+.+.+.-+.
T Consensus 38 ~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 38 ISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 4556777777777777778899999999999999999864433222 2222233333333455556666776666544
No 166
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=57.58 E-value=48 Score=27.00 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcccccchH--HHHHHH-HHHHHhhh---hHHHHHHHHHHHHHHH
Q 006912 476 QFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRL--EIILQH-LMMAFGKY---QRRNLRIVYDAIGTLA 548 (626)
Q Consensus 476 ~~~~ll~~l~~~l~d-~~~~v~~~a~~al~~l~~~~~~~~~~~l--~~i~~~-l~~~l~~~---~~~~~~~~~~~l~~i~ 548 (626)
.-...+..+.+.++. .++.++..|+..|..++++||..|...+ ..++.. |..++... ...++..+++.|....
T Consensus 50 ~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 50 GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 346677888888874 5888999999999999999997653222 244432 34444332 2357778888888888
Q ss_pred HHhccc
Q 006912 549 DAVGFE 554 (626)
Q Consensus 549 ~~~~~~ 554 (626)
.+++..
T Consensus 130 ~~F~~~ 135 (152)
T 3rru_A 130 QGFPGG 135 (152)
T ss_dssp TCCSSS
T ss_pred HHhCCC
Confidence 777643
No 167
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=54.42 E-value=1.6e+02 Score=28.41 Aligned_cols=199 Identities=15% Similarity=0.169 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHHHHHccC--c-cchhhhHH-HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHH
Q 006912 406 WKDREAAVLALGAIAEGC--I-KGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~--~-~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll 481 (626)
|..-......+..+.... . .....++. ..+-.++..+..++++=|.....++.++-..+.. ...++...+
T Consensus 143 WpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~------~R~~Irk~i 216 (392)
T 2jak_A 143 WPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG------LRAYIRKQI 216 (392)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGG------GHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 665555555555544331 1 11122222 3566788889999999999998888877665442 455555555
Q ss_pred HHHHHHh-ccC-CHHHHHHHHHHHHHHHHHhcccccchHHHH-HHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhccccCC
Q 006912 482 MGLLKRI-LDT-NKRVQEAACSAFATLEEEAAEELAPRLEII-LQHLMMAFGKYQRRN-LRIVYDAIGTLADAVGFELNQ 557 (626)
Q Consensus 482 ~~l~~~l-~d~-~~~v~~~a~~al~~l~~~~~~~~~~~l~~i-~~~l~~~l~~~~~~~-~~~~~~~l~~i~~~~~~~~~~ 557 (626)
..++-.+ .+. ...--...+..++.++....-.+.+--..+ ...|+.+.....-.. ......|+..+++. +
T Consensus 217 ~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK------D 290 (392)
T 2jak_A 217 NNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK------D 290 (392)
T ss_dssp HHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH------C
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc------C
Confidence 5544333 322 222234577788888877654444333332 233333332222111 12344555555543 2
Q ss_pred hhhhhhhhHHHHHHHhcCCCCCCccchHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHH
Q 006912 558 PVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQ 618 (626)
Q Consensus 558 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~l~~~~g~-~f~~~~~~i~~~l~~~l~~~ 618 (626)
|.....++..+++-|=... ..++. -.++-+..+...++. .|.....+++..+.+.++++
T Consensus 291 p~L~~~vi~~LLk~WP~tn-s~Kev-lFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~ 350 (392)
T 2jak_A 291 STLTEPVVMALLKYWPKTH-SPKEV-MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP 350 (392)
T ss_dssp GGGHHHHHHHHHHSSCSSC-CTTHH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred chhHHHHHHHHHHhCCCCC-chHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455666666666664322 33432 223444455555544 67777777777777777654
No 168
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=49.53 E-value=95 Score=24.52 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=69.5
Q ss_pred cCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchh
Q 006912 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (626)
Q Consensus 85 ~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~ 164 (626)
.++.+....+...|+..|+|.+..+...++..+..+- ..++|.+.+.+.++|..= -..++..++...+.
T Consensus 23 ~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~--------~~l~p~I~~vl~s~D~~W---~ywil~~lv~~~~~ 91 (134)
T 3ut4_A 23 KLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ--------SIAMPHILTILQGNDIMW---KYWVIKLMIPYLIY 91 (134)
T ss_dssp TCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH--------HHHHHHHHHHHHSSCHHH---HHHHHHHHGGGCCH
T ss_pred hCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc--------HhhHHHHHHHHHcCChHH---HHHHHHHHHHcCCH
Confidence 4677778888899999999999998887776666432 578888888887776532 33455555555554
Q ss_pred ccccCCCCCccchhhhhHHHHHHhcCCCC-----hHHHHHHHHHHHHH
Q 006912 165 VLDSDVPGLAECPINIFLPRLLQFFQSPH-----TSLRKLSLGSVNQF 207 (626)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~-----~~vr~~al~~l~~~ 207 (626)
. ....+.+.+.+...++. .++...|-+.|..+
T Consensus 92 ~-----------~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 92 P-----------NKQLVKSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp H-----------HHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred H-----------HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 2 24677777888777752 35666666666555
No 169
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=48.64 E-value=2.1e+02 Score=28.30 Aligned_cols=58 Identities=10% Similarity=0.163 Sum_probs=45.3
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHH--HHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 006912 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK--VLMGLLKRILDTNKRVQEAACSAFATLEE 508 (626)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--ll~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (626)
.++.+-..||.=+|.++++.+. ....+.. .=..+++.|.++++.||..|..|+.++..
T Consensus 417 ~d~~~laVAc~Digefvr~~P~------gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPE------SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT------HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcc------hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4688899999999999998763 2333332 34566788889999999999999999864
No 170
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=45.70 E-value=1.7e+02 Score=28.20 Aligned_cols=58 Identities=5% Similarity=-0.001 Sum_probs=41.1
Q ss_pred hhHHhHHHHHHHHHhhhchhc--cccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHhcc
Q 006912 145 INHMEGAMDALSKICEDIPQV--LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (626)
Q Consensus 145 ~~~r~~~l~~l~~l~~~~~~~--~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (626)
.......+.||..+...-... +.. -+..+..+..++.++.+.+|..|++.|..++.+.
T Consensus 134 ~~~q~~~l~CLkalmN~~~G~~~vl~---------~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~ 193 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNNKFGIKTMLE---------TEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 193 (383)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHT---------CSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHc---------ChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCc
Confidence 355667788888776543221 111 1456778888899999999999999998888664
No 171
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=45.33 E-value=1.1e+02 Score=24.00 Aligned_cols=90 Identities=9% Similarity=0.045 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccC
Q 006912 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELN 556 (626)
Q Consensus 477 ~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~ 556 (626)
.+..+...+..+......++..+.+++.. ..+.+.++..+.+.+.......+-..+-.+..++..++....
T Consensus 6 ~e~~l~~~L~~L~~s~~sI~~~s~w~l~h---------~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~ 76 (132)
T 4flb_A 6 LESSLDRKFQSVTNTMESIQGLSSWCIEN---------KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNA 76 (132)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHHHT---------GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccCh
Confidence 44555666666766556677766666654 245677777777777766555555788888889888765432
Q ss_pred ChhhhhhhhHHHHHHHhcCC
Q 006912 557 QPVYLDILMPPLIAKWQQLP 576 (626)
Q Consensus 557 ~~~~~~~l~~~l~~~~~~~~ 576 (626)
+.|...+-+.+...+....
T Consensus 77 -~~f~~~f~~~l~~~~~~~~ 95 (132)
T 4flb_A 77 -IIFRESFADVLPEAAALVK 95 (132)
T ss_dssp -THHHHHHHTTHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHHHHHhC
Confidence 2355555555556666543
No 172
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=44.71 E-value=1.2e+02 Score=24.25 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=70.4
Q ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHh
Q 006912 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEA 510 (626)
Q Consensus 433 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~d~--~~~v~~~a~~al~~l~~~~ 510 (626)
+.+...+..|.++...|...+.|++. +..+...++..+.+.+... .+.-|......+..++..+
T Consensus 6 ~~l~~kL~~L~~sq~sIq~~s~W~l~--------------h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqns 71 (142)
T 2km4_A 6 EQFTTKLNTLEDSQESISSASKWLLL--------------QYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQA 71 (142)
T ss_dssp HHHHHHHHTCCSCHHHHHHHHHHHHT--------------CGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHH--------------hhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHH
Confidence 34556667777777777777777662 3455677788888888765 5677888899999999887
Q ss_pred ccc-ccchHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHhccccCChhhhhhhhHHHHHHHh
Q 006912 511 AEE-LAPRLEIILQHLMMAFG----KYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQ 573 (626)
Q Consensus 511 ~~~-~~~~l~~i~~~l~~~l~----~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~ 573 (626)
... -.+|...+-+.|..++. ..+++.+..+..++...-+. ..+.++++..+-..+...++
T Consensus 72 k~k~~~~f~~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iWeer---~vf~~~~i~~L~~~l~~~~~ 136 (142)
T 2km4_A 72 KGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKER---NIFSKQVVNDIERSLAAALE 136 (142)
T ss_dssp GGGTCCHHHHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH---TCSCHHHHHHHHHHHHHHHC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc---CCcCHHHHHHHHHHHHhHHh
Confidence 431 22333333322222221 12344445555555555433 12223455555444444443
No 173
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=40.64 E-value=45 Score=27.18 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=50.4
Q ss_pred hHHHHHHHhhcC-CCCCChhHHHHHHHHHHHHHccCccchhhhHH--HHHHH-HhhhcCC---CchHHHHHHHHHHHHHH
Q 006912 389 TLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAF-LIPLLDD---KFPLIRSISCWTLSRFS 461 (626)
Q Consensus 389 ~l~~~l~~~l~~-~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~l~~~-l~~~l~d---~~~~vr~~a~~~l~~l~ 461 (626)
..+..+.+.++. ++ +.+..-|+..+..+..+|+..+...+. +.+.. +...+.+ .+..||..++..+..++
T Consensus 53 eA~ral~KRl~~~~n---~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 53 DAVKALKKRISKNYN---HKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp HHHHHHHHHHTTCCB---HHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC---hHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 566777777874 34 766667899999999999765532221 23332 3344442 34579999999999999
Q ss_pred HHHhh
Q 006912 462 KFIVQ 466 (626)
Q Consensus 462 ~~~~~ 466 (626)
..++.
T Consensus 130 ~~F~~ 134 (152)
T 3rru_A 130 QGFPG 134 (152)
T ss_dssp TCCSS
T ss_pred HHhCC
Confidence 87764
No 174
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=40.62 E-value=1.9e+02 Score=25.50 Aligned_cols=75 Identities=12% Similarity=-0.013 Sum_probs=52.1
Q ss_pred hcCCChHHHHHHHHhhcCCCCHHHHHHHHH----HHHHHHHHhhccCChhHHHHHHHhHhhhhhCCcHHHHHHHHHHHHH
Q 006912 44 SQFPDFNNYLAFILARAEGKSVEIRQAAGL----LLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSV 119 (626)
Q Consensus 44 ~~~p~~~~~l~~il~~~~~~~~~~r~~a~~----~l~~~i~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~~~~~l~~ 119 (626)
...|.....+..-+ . +.+.-.|..|.. ++.+ ...+.++......+...+-..+.++...|+++++-+|..
T Consensus 104 ~~~~~~~~~~~~W~-~--s~~~w~rR~ai~~q~~ll~~---~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~ 177 (235)
T 1t06_A 104 SESNIAQDVADKWI-A--SGDELKMSAGWSCYCWLLGN---RKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNT 177 (235)
T ss_dssp TTSSSHHHHHHHHH-H--SCCHHHHHHHHHHHHHHHHH---SCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHH-c--CcHHHHHHHHHHHHHHHHhh---ccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHH
Confidence 34555555444433 3 677788888777 4443 122245666777777777778889999999999999999
Q ss_pred HHhhc
Q 006912 120 VVQLG 124 (626)
Q Consensus 120 i~~~~ 124 (626)
+.+.+
T Consensus 178 ~gk~~ 182 (235)
T 1t06_A 178 VAISY 182 (235)
T ss_dssp HHHHC
T ss_pred HHhhC
Confidence 99875
No 175
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=37.43 E-value=1.6e+02 Score=23.61 Aligned_cols=77 Identities=9% Similarity=0.044 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHHHH
Q 006912 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (626)
Q Consensus 127 ~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~ 206 (626)
..-+.+...+.+.+....+..+-.++.++..+++..+..... .....+.+.+...+...++..|....+.+.-
T Consensus 39 ~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~-------~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~ 111 (144)
T 1sz9_A 39 SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTI-------YFSRNLFNLYKRTYLLVDNTTRTKLINMFKL 111 (144)
T ss_dssp GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHH-------HHHTTHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHH-------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455778888888888788899999999999999987754321 1224444555556666788999999999988
Q ss_pred HHhc
Q 006912 207 FIML 210 (626)
Q Consensus 207 ~~~~ 210 (626)
+-+.
T Consensus 112 W~~~ 115 (144)
T 1sz9_A 112 WLNP 115 (144)
T ss_dssp HTSG
T ss_pred HhCc
Confidence 8755
No 176
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=37.25 E-value=2.9e+02 Score=26.55 Aligned_cols=178 Identities=14% Similarity=0.117 Sum_probs=93.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHh-cCCChHHH----HHHHHhh---cCCCCHHHHHHHHHHHHHHHHHhhccCCh
Q 006912 17 ICRLLEQQISPSSTADKSQIWQQLQQYS-QFPDFNNY----LAFILAR---AEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (626)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~a~~~L~~~~-~~p~~~~~----l~~il~~---~~~~~~~~r~~a~~~l~~~i~~~~~~l~~ 88 (626)
+.+++.-..|+|+. .|......|..++ +..+.-.. .-+++.. ..+..-.+-. ..-++...+...-..+.+
T Consensus 176 i~~Ll~lfdSeDpR-ERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIae-LLeilgsIIngfa~PLKe 253 (392)
T 2jak_A 176 VLQLLELFDSEDPR-ERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAE-LLEILGSIINGFALPLKE 253 (392)
T ss_dssp HHHHHHHTTCSCHH-HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHH-HHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHcCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhccCCCCcH
Confidence 55666666777777 7777777776643 23332111 1111111 0011111110 111222222222123566
Q ss_pred hHHHHHHHhHhhhhhCCc-HHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccc
Q 006912 89 SNQQYIKSELLPCLGAAD-RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (626)
Q Consensus 89 ~~~~~i~~~L~~~l~~~~-~~vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~ 167 (626)
+.+..+...|+++.+... ...-..++.|+..++..++ .--..++..+.+..--.+..-...-+.-+..+++..+..-
T Consensus 254 ehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp-~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~- 331 (392)
T 2jak_A 254 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS-TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSE- 331 (392)
T ss_dssp HHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCG-GGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHH-
T ss_pred HHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCc-hhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHH-
Confidence 777777777777776432 2334567778888887763 3334455555555433332222334555666666554321
Q ss_pred cCCCCCccchhhhhHHHHHHhcCCCChHHHHHHHHHH
Q 006912 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (626)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l 204 (626)
+......++..+..++++++..|...|+..+
T Consensus 332 ------f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 332 ------FVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp ------HHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred ------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 0234567777788888999999988887554
No 177
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=27.80 E-value=2.2e+02 Score=22.26 Aligned_cols=63 Identities=10% Similarity=-0.004 Sum_probs=41.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Q 006912 481 LMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (626)
Q Consensus 481 l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~l~~i~~~~~ 552 (626)
+...+..|......++..+.+++.. ..+.+.++..+.+.+.......+-..+-.+..++..+.
T Consensus 9 l~~~L~~L~~s~~sI~~~s~w~l~~---------~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~ 71 (135)
T 4fu3_A 9 LEKKLSELSNSQQSVQTLSLWLIHH---------RKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSK 71 (135)
T ss_dssp HHHHHHHCCSSTTHHHHHHHHHHHT---------GGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHccccHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 3444555665567777777777754 24567777777777766555545577778888877764
No 178
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=27.30 E-value=3.7e+02 Score=24.74 Aligned_cols=152 Identities=12% Similarity=0.004 Sum_probs=86.2
Q ss_pred HHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCc--cch--hhhHHHHHHHHhhhcCC-CchHHHHHHHHHHHHHHHHH
Q 006912 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI--KGL--YPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFI 464 (626)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~--~~~--~~~l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~ 464 (626)
-+..+.+.++=| ...|..++..+...+-... ..+ ...-..++..++..+.+ ..+..+..+++++.++...-
T Consensus 104 ~l~~l~kil~WP----~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~ 179 (304)
T 3ebb_A 104 QLQILWKAINCP----EDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQ 179 (304)
T ss_dssp HHHHHHHHHTSC----TTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSH
T ss_pred HHHHHHHHHcCC----HHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCc
Confidence 445555555111 3467888888877654321 111 11223455566666643 35666777777776665432
Q ss_pred hhhcCCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHhhh-hHHHHHHHH
Q 006912 465 VQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA--EELAPRLEIILQHLMMAFGKY-QRRNLRIVY 541 (626)
Q Consensus 465 ~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v~~~a~~al~~l~~~~~--~~~~~~l~~i~~~l~~~l~~~-~~~~~~~~~ 541 (626)
... .........++..+...+.+++..+|.++++.+-++.-... ..+ +-...++..+...++.. +.+..-.++
T Consensus 180 ~g~---~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~-~~~~~ll~~l~~il~~~~d~EalyR~L 255 (304)
T 3ebb_A 180 AGQ---KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI-EGKAQCLSLISTILEVVQDLEATFRLL 255 (304)
T ss_dssp HHH---HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hhH---HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 210 01223456777777777777789999999999998875441 111 22333444444555443 345555777
Q ss_pred HHHHHHHH
Q 006912 542 DAIGTLAD 549 (626)
Q Consensus 542 ~~l~~i~~ 549 (626)
-|+|+++.
T Consensus 256 vALGtL~~ 263 (304)
T 3ebb_A 256 VALGTLIS 263 (304)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88888874
No 179
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=25.43 E-value=5.8e+02 Score=26.41 Aligned_cols=183 Identities=11% Similarity=0.065 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhc-CCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHhhh--hhCCcHH
Q 006912 32 DKSQIWQQLQQYSQ-FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPC--LGAADRH 108 (626)
Q Consensus 32 ~r~~a~~~L~~~~~-~p~~~~~l~~il~~~~~~~~~~r~~a~~~l~~~i~~~~~~l~~~~~~~i~~~L~~~--l~~~~~~ 108 (626)
.|.-...+|+++.+ +.+-...|...+......++.+...-...+-..+..+=..|+...-..+...++.. -...++.
T Consensus 74 ~~~~V~~AL~~~~~Gd~~~Yd~L~~~~~~~~~~~d~~~~~~L~~~L~aLs~~Vs~Ld~~~~~~LV~aIL~~~~W~~r~~~ 153 (649)
T 3tj1_A 74 YSRFVKSALDDLDKNDSTQIGIIANQVALPSKNPERINDKNLNILLDILSSNINRIESSRGTFLIQSIINFEKWWELPPH 153 (649)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHSCTTCTTSCCHHHHHHHHHHHHHTGGGGCSGGGHHHHHHHHTCTTGGGSCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCcCcCcCCHHHHHHHHHHHHhhhhhcCchhHHHHHHHHhCCchhccCCHH
Confidence 56666777777655 44445667777764322222221111111111222332335432334555555544 1233556
Q ss_pred HHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhhchhccccCCCCCccchhhhhHHHHHHh
Q 006912 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (626)
Q Consensus 109 vr~~~~~~l~~i~~~~~~~~~~~ll~~l~~~l~~~~~~~r~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 188 (626)
+.......++.++..- +..|...+..|.+.+..+... ....=.+|..+++.+|.. ...+.+.+.+.
T Consensus 154 ~v~~Y~~FL~~LvSa~-~~yl~~vl~mLV~~F~~~~~~-~~~~H~~L~~Il~lvP~s------------~~~L~~iL~~~ 219 (649)
T 3tj1_A 154 TLSKYIYFIKILCSSI-PKWWQDVSMILVSCFILPIKQ-TVCHHDMLKYFLRMIPSS------------MGFIDTYLAKF 219 (649)
T ss_dssp HHHHHHHHHHHHHHHC-GGGHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHHHCGGG------------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhccCCCcc-cHHHHHHHHHHHHHcCCC------------HHHHHHHHHHh
Confidence 6666677778777654 467888999988888754222 122345666666666643 25556666666
Q ss_pred cCCC--ChHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHH
Q 006912 189 FQSP--HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL 228 (626)
Q Consensus 189 l~~~--~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~ 228 (626)
+-.. +......=++.+..+..+.|.--...+.-++..+++
T Consensus 220 FP~~~~s~~~~~~Yv~NLLrl~~Y~PeL~~~Il~LIierlik 261 (649)
T 3tj1_A 220 FPNKNDTRRKLVNYTSNLLKLRGYCSELGFQIWSLLIEKIIS 261 (649)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred CCCCCCchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 5442 333334445555566666663333333333344433
No 180
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=23.64 E-value=2.9e+02 Score=26.52 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHHHHccCc--cchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhcCCCc-hhhhHHHH--
Q 006912 406 WKDREAAVLALGAIAEGCI--KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN-GREQFEKV-- 480 (626)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~--~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~l-- 480 (626)
......++.|+..+...-. +.+.. -+..+..+..++..+++.+|..++..|+.+|.+-.+. . +...+..+
T Consensus 134 ~~~q~~~l~CLkalmN~~~G~~~vl~-~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~----gG~~~VL~Al~~ 208 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNNKFGIKTMLE-TEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPE----DMNERVLEAMTE 208 (383)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHT-CSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSST----THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHc-ChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcC----CcHHHHHHHHHH
Confidence 5667888899998876531 11111 1235677888888999999999999998888653200 1 11111111
Q ss_pred ---------HHHHHHHhcc-CCHHHHHHHHHHHHHHHHHh
Q 006912 481 ---------LMGLLKRILD-TNKRVQEAACSAFATLEEEA 510 (626)
Q Consensus 481 ---------l~~l~~~l~d-~~~~v~~~a~~al~~l~~~~ 510 (626)
+..++..+.+ .+...+.++...+..++...
T Consensus 209 ~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~ 248 (383)
T 3eg5_B 209 RAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPA 248 (383)
T ss_dssp HHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC
Confidence 3344555654 35666666666666666543
No 181
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=20.54 E-value=1.3e+02 Score=18.23 Aligned_cols=36 Identities=28% Similarity=0.239 Sum_probs=20.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHH
Q 006912 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLA 54 (626)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~a~~~L~~~~~~p~~~~~l~ 54 (626)
.|.+++..+.||.+. .+-.+.|..++.+|..+..++
T Consensus 2 aLqqLl~tlksp~sp---~qqqqvl~ILksnPqLMAAfI 37 (47)
T 1zoq_C 2 ALQDLLRTLKSPSSP---QQQQQVLNILKSNPQLMAAFI 37 (47)
T ss_dssp HHHHHHHTCCSCCCH---HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCH---HHHHHHHHHHHcCHHHHHHHH
Confidence 356777777777755 222344555666776554443
No 182
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.18 E-value=3.6e+02 Score=22.07 Aligned_cols=102 Identities=18% Similarity=0.132 Sum_probs=54.8
Q ss_pred HHhHHHHHHHhhcCCCCCChhHHHHHHHHHHHHHccCccchhhhHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHhh
Q 006912 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ 466 (626)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 466 (626)
...+.+.+.+++.+.| -..++.++..+.. + .+.+.++..++..--|.+..-|..+...+..+....
T Consensus 10 ~kk~~~ii~EYf~~~D------~~Ea~~~l~eL~~--p----~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~~~-- 75 (165)
T 2rg8_A 10 EKTLTPIIQEYFEHGD------TNEVAEMLRDLNL--G----EMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTV-- 75 (165)
T ss_dssp HHHHHHHHHHHHHHCC------HHHHHHHHHHHTC--S----GGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBTTT--
T ss_pred HHHHHHHHHHHHcCCC------HHHHHHHHHHhCC--c----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCC--
Confidence 3455667788888776 3445556655542 2 133334555544444667778888888888775321
Q ss_pred hcCCCchhhhHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHH
Q 006912 467 DIGHQNGREQFEKVLMGLLKRILDT---NKRVQEAACSAFATLE 507 (626)
Q Consensus 467 ~~~~~~~~~~~~~ll~~l~~~l~d~---~~~v~~~a~~al~~l~ 507 (626)
.....+..-+..++..+.|- .|.+.......+++.+
T Consensus 76 -----ls~~~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav 114 (165)
T 2rg8_A 76 -----MSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAV 114 (165)
T ss_dssp -----BCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHhChhhcccccchHHHHHHHHHHHH
Confidence 12333344444444444432 4555554444444443
Done!