BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006913
(626 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LFS2|GEX3_ARATH Protein GAMETE EXPRESSED 3 OS=Arabidopsis thaliana GN=GEX3 PE=2
SV=1
Length = 641
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 254/597 (42%), Positives = 341/597 (57%), Gaps = 70/597 (11%)
Query: 33 RRSAFRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVY 92
++S LSK LIG+DG++YACS+ F+FESNG+IAWS+ ++F CN APV+ G ++
Sbjct: 37 KKSVRILSKILIGDDGRVYACSDNDFFSFESNGSIAWSVHMNFKCNTDFAPVYSGFNQML 96
Query: 93 IVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALF 152
++AENR+L+V + GT +S ++F+ G I G AVS SSSSVYI VK L+
Sbjct: 97 LLAENRILRVIFPRNGT-KSEPELFFDPGE------TILGFAVSVSSSSVYITVKNHGLY 149
Query: 153 AFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLS 212
A+ Q LW A P +++ GYR GC K +C F S PVID CEGSIYISN +GELYSLS
Sbjct: 150 AYNMFRQQLWIAEPKIERFGYRLGCRKDFDNCTFNSRPVIDSCEGSIYISNNEGELYSLS 209
Query: 213 AHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGS 272
Y+ WIQD S D+ FT+TPGNNG +YV P+++LV ALD+ SG+ILW K++GPL
Sbjct: 210 LRGTYYQWIQDFSLVDRFFTVTPGNNGLVYVVFPIKSLVFALDSFSGDILWQKTIGPLAE 269
Query: 273 AEYA-PVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYW--------- 322
+ PV+DSN W S+GSLDG LYSFS +G L K K+ +DSVIQ P
Sbjct: 270 TSASDPVIDSNSWASIGSLDGTLYSFSRTGDLYKIPKNAETDSVIQIEPLLDCSGYAVYV 329
Query: 323 ---------------FHLLGPSIGLKAILCLMV------------VGQFSSLLSKSDLQH 355
+ + A+ L+V Q LL DLQH
Sbjct: 330 SQTKFEGMIDRVIEDYTYVSAKKPETAVFSLVVPETRSIYWSQSYSDQIPGLLLDEDLQH 389
Query: 356 FVLDESLVLAFLTAS-----------NQKLVASCSQTRPKLPSIYTGNERAILLFLFFES 404
FVLDE + LAF+ AS ++KL +SCS P+ IY GNERAI+ FL FE
Sbjct: 390 FVLDERIALAFVAASSSGNPFRCRSKHEKLSSSCSFAEPEHLDIYIGNERAIIWFLLFEF 449
Query: 405 VVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKAFDRSITELE-----KKV 459
V++++ A LVRFC IFW+KKKLQ + FL+KRR L K + D++IT L+ +
Sbjct: 450 VIMVLFAALVRFCFIFWKKKKLQDRPFSTFLDKRRLLHRKSREIDKTITRLQNESTANES 509
Query: 460 AEDAVANEVIKK--------SVVCLGRDEAAASSESKSFP-PVYDAKSRSYSFQGAKKES 510
A D + + + K+ S LGRD + S+ K + P+Y SRS+S++ + ES
Sbjct: 510 AVDKIGDLIQKRENVKRKLSSTYSLGRDIDESKSKLKDYVLPLYGGSSRSFSYRNRENES 569
Query: 511 VTIFHTLSATSSAESSSERETSWVSEDKDQSTAKAKAKAKAKAPIKAE-SSSDGDGI 566
+TIF T S SS+E S E D + K K K +E SS+DGDGI
Sbjct: 570 ITIFQTPSDESSSEESYRDEHYDDVADDEHDEDDLDRKQKGKLLAHSEGSSNDGDGI 626
>sp|P42111|YXAL_BACSU Uncharacterized protein YxaL OS=Bacillus subtilis (strain 168)
GN=yxaL PE=1 SV=3
Length = 410
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 115/276 (41%), Gaps = 56/276 (20%)
Query: 43 LIGEDGKIYACS-EKTLFAFESNGTIAWSLDLDFTCNIG----TAPVHGGTGEVYIVAEN 97
+I DG +Y S + + AF +G++ W T N+G +PV G G +Y+ + +
Sbjct: 103 VIDGDGTVYLHSRDGEMKAFNPDGSVKW-----VTGNLGKTYTQSPVLGTNGVIYLASYD 157
Query: 98 RVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH 157
+ K+ + T E T V +G + V S ++Y + + A
Sbjct: 158 K--KIYFIDKETGEILTTVPL--------SGGPSSETVIGSDGTLYFSTLDNYVHAIKPT 207
Query: 158 GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPY 217
+ W+ K + +SVPV+ + G++Y+ Y++++ +
Sbjct: 208 SKSTWTE------------RWKLKTNGVVSSVPVLAK-NGTVYVGTYNYVFYAINSGTGQ 254
Query: 218 FNWIQDLSS-------FDKAFTLTPGN-NGYLYVTIPVRALVLALDTSSGNILWHKSVGP 269
W + S+ DK + GN +G LY TS+G++ W P
Sbjct: 255 VKWSRTTSNAFKGYPVIDKDGNIYAGNQDGQLYAY-----------TSTGSLKW---TFP 300
Query: 270 L-GSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLN 304
L G + +P +D NG I +GS G L+S S +G +N
Sbjct: 301 LNGFSSSSPAIDHNGNIYIGSGSGELFSISKNGDMN 336
>sp|F4K1G2|AEE19_ARATH Putative acyl-activating enzyme 19 OS=Arabidopsis thaliana
GN=At5g35930 PE=2 SV=1
Length = 1040
Score = 41.2 bits (95), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 17/159 (10%)
Query: 156 THGQLLW--SAGPVLDQLGYRQGCTKTDVDC---YFTSVPVIDQCEGSIYISNTQGELYS 210
T QL+W S L L YR C + C F S P ID+ S+Y+++T G + +
Sbjct: 785 TSSQLIWCGSHDHTLYALDYRSQCCVYKLQCGGSIFAS-PAIDEGHSSLYVASTSGRVIA 843
Query: 211 LSAHSPYFN--WIQDLSS-FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILW-HKS 266
+S F+ W+ +L + + +TP + + + + + + SG I+W +++
Sbjct: 844 VSIKDSPFHTLWLFELEAPIFGSLCITPSTQNVICCLVDGQVIAM---SPSGTIIWRYRT 900
Query: 267 VGPLGSAE-YAPVVDSNGWISVGSLDGLLYSFSP-SGVL 303
GP+ + + V+ S + V +G +YS P SG L
Sbjct: 901 GGPIFAGPCMSHVLPSQ--VLVCCRNGCVYSLEPESGCL 937
>sp|P54742|AFSK_STRGR Serine/threonine-protein kinase AfsK OS=Streptomyces griseus
GN=afsK PE=3 SV=1
Length = 807
Score = 37.4 bits (85), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 190 PVIDQCEGSIYISNTQGELYSLSAHSPYFNW---IQDLSSFDK-AFTLTPGNNGYLYVTI 245
PVI +G++Y+ L +L A + W I D +S +TP +GY+YV
Sbjct: 565 PVIH--DGTVYLWQ-DARLRALDARTGLERWSYPIGDAASCGGVPVRVTPATDGYVYVAA 621
Query: 246 PVRALVLALDTSSGNILWH 264
R VLA++T SG + WH
Sbjct: 622 GTR--VLAVETGSGPVRWH 638
>sp|Q5E769|BAMB_VIBF1 Outer membrane protein assembly factor BamB OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=bamB PE=3 SV=1
Length = 385
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 19/158 (12%)
Query: 135 VSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ 194
VS S + GR A ++ GQLLW PV G +G T+ D + P+I
Sbjct: 193 VSISGGVFWGMSNGRLAAALISKGQLLWQQ-PV----GTPKGATEIDRLVDVDASPLI-- 245
Query: 195 CEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLAL 254
+Y G+L +L + W ++ SS + ++G + + V+A+
Sbjct: 246 LGSRLYTVGYNGQLIALDLRTGQPVWKRNYSS-----AMNMSSDGKRLFLVTEKDHVVAV 300
Query: 255 DTSSGNILW-------HKSVGPLGSAEYAPVVDSNGWI 285
D SG LW + P+ Y + DS G++
Sbjct: 301 DARSGTELWSNEELEYRQLTSPMIIDSYIVLADSEGYL 338
>sp|B7IIW6|MAF_BACC2 Septum formation protein Maf OS=Bacillus cereus (strain G9842)
GN=maf PE=3 SV=1
Length = 191
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 177 CTKTDVDCYFTSVPVID-------QCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFD 228
T+ ++D Y TS +D Q +GSI++ N QG+ YS+ P +++L FD
Sbjct: 128 LTEEEIDTYVTSKEPLDKAGSYGIQGKGSIFVQNIQGDYYSVVGL-PIARLVRELKQFD 185
>sp|A1C8D8|VPS10_ASPCL Vacuolar protein sorting/targeting protein 10 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=vps10 PE=3 SV=1
Length = 1486
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 243 VTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGV 302
V +PV+ LD+S+ + H ++G L AEY ++ SN +G LY+ S
Sbjct: 924 VDVPVKTAFTVLDSSTHAVFLHLTMGVLKGAEYGSIIKSNS-------NGTLYTVS---- 972
Query: 303 LNKFSKSD 310
LN S+ D
Sbjct: 973 LNAASRDD 980
>sp|P0CX22|YRF18_YEAST Y' element ATP-dependent helicase protein 1 copy 8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YRF1-8 PE=2
SV=1
Length = 1796
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 12/169 (7%)
Query: 434 FLEKRRSLQLKKKAFDRSITELEKKVAEDAVANEVIKKSVVCLGRDEAAASSESKSFPPV 493
FL + ++ F + + EL K + E +++ ++ LGR + E+ +
Sbjct: 617 FLNTAKGCLVEYATFRQYMRELPKNAPQKLNFRE-MRQGLIALGRHCVGSRFETDLYESA 675
Query: 494 YDAKSRSYSFQ------GAKKESVTIFHTLSATSSAESSSERETSWVSEDKDQSTAKAKA 547
++S Q G S+T +AT E +SER W+ + D + +
Sbjct: 676 TSELMANHSVQTGRNIYGVDSFSLTSVSGTTATLLQERASERWIQWLGLESDYHCSFSST 735
Query: 548 KAKAKAPIKAESSSDGDGIMDKEYRRSPSEPASSSRGFINPLLLKQEKL 596
+ +SSD D + + R+ P EP S+ N +L+ +KL
Sbjct: 736 RNAEDVVAGEAASSDHDQKISRVTRKRPREPKST-----NDILVAGQKL 779
>sp|P0CX21|YRF15_YEAST Y' element ATP-dependent helicase protein 1 copy 5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YRF1-5 PE=2
SV=1
Length = 1796
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 12/169 (7%)
Query: 434 FLEKRRSLQLKKKAFDRSITELEKKVAEDAVANEVIKKSVVCLGRDEAAASSESKSFPPV 493
FL + ++ F + + EL K + E +++ ++ LGR + E+ +
Sbjct: 617 FLNTAKGCLVEYATFRQYMRELPKNAPQKLNFRE-MRQGLIALGRHCVGSRFETDLYESA 675
Query: 494 YDAKSRSYSFQ------GAKKESVTIFHTLSATSSAESSSERETSWVSEDKDQSTAKAKA 547
++S Q G S+T +AT E +SER W+ + D + +
Sbjct: 676 TSELMANHSVQTGRNIYGVDSFSLTSVSGTTATLLQERASERWIQWLGLESDYHCSFSST 735
Query: 548 KAKAKAPIKAESSSDGDGIMDKEYRRSPSEPASSSRGFINPLLLKQEKL 596
+ +SSD D + + R+ P EP S+ N +L+ +KL
Sbjct: 736 RNAEDVVAGEAASSDHDQKISRVTRKRPREPKST-----NDILVAGQKL 779
>sp|P0CX20|YRF11_YEAST Y' element ATP-dependent helicase protein 1 copy 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YRF1-1 PE=2
SV=1
Length = 1796
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 12/169 (7%)
Query: 434 FLEKRRSLQLKKKAFDRSITELEKKVAEDAVANEVIKKSVVCLGRDEAAASSESKSFPPV 493
FL + ++ F + + EL K + E +++ ++ LGR + E+ +
Sbjct: 617 FLNTAKGCLVEYATFRQYMRELPKNAPQKLNFRE-MRQGLIALGRHCVGSRFETDLYESA 675
Query: 494 YDAKSRSYSFQ------GAKKESVTIFHTLSATSSAESSSERETSWVSEDKDQSTAKAKA 547
++S Q G S+T +AT E +SER W+ + D + +
Sbjct: 676 TSELMANHSVQTGRNIYGVDSFSLTSVSGTTATLLQERASERWIQWLGLESDYHCSFSST 735
Query: 548 KAKAKAPIKAESSSDGDGIMDKEYRRSPSEPASSSRGFINPLLLKQEKL 596
+ +SSD D + + R+ P EP S+ N +L+ +KL
Sbjct: 736 RNAEDVVAGEAASSDHDQKISRVTRKRPREPKST-----NDILVAGQKL 779
>sp|Q27991|MYH10_BOVIN Myosin-10 OS=Bos taurus GN=MYH10 PE=2 SV=2
Length = 1976
Score = 33.1 bits (74), Expect = 6.0, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 438 RRSLQLKKKAFDRSITELEKKVAEDAVANEVIKKSVVCLGRDEAAASSESKSFPPVYDA- 496
RRSL+ + +A +T+ +KKV +D E ++++ L +D S + YD
Sbjct: 1359 RRSLEKQLQALQAQLTDTKKKVDDDLGTIENLEEAKKKLLKDVEVLSQRLEEKALAYDKL 1418
Query: 497 -KSRSYSFQGAKKESVTIFHTLSATSSAESSSERETSWVSEDKDQSTAKAKAKAKAKAPI 555
K+++ Q V + H S+ E ++ ++E+K+ S A+ + +A+A
Sbjct: 1419 EKTKTRLQQELDDLLVDLDHQRQIVSNLEKKQKKFDQLLAEEKNISARYAEERDRAEAEA 1478
Query: 556 KAESS 560
+ + +
Sbjct: 1479 REKET 1483
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,385,436
Number of Sequences: 539616
Number of extensions: 9081424
Number of successful extensions: 31301
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 149
Number of HSP's that attempted gapping in prelim test: 29971
Number of HSP's gapped (non-prelim): 949
length of query: 626
length of database: 191,569,459
effective HSP length: 124
effective length of query: 502
effective length of database: 124,657,075
effective search space: 62577851650
effective search space used: 62577851650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)