Query 006913
Match_columns 626
No_of_seqs 230 out of 1803
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 16:17:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11138 outer membrane biogen 99.8 2.1E-16 4.5E-21 172.1 32.7 265 39-337 113-383 (394)
2 PRK11138 outer membrane biogen 99.8 5.6E-16 1.2E-20 168.7 35.0 235 40-308 63-321 (394)
3 TIGR03300 assembly_YfgL outer 99.8 2.8E-15 6E-20 162.0 35.6 233 40-308 59-306 (377)
4 TIGR03300 assembly_YfgL outer 99.7 2.9E-15 6.3E-20 161.8 33.8 275 29-337 86-368 (377)
5 cd00216 PQQ_DH Dehydrogenases 99.7 1.6E-13 3.6E-18 153.7 32.8 267 46-340 108-458 (488)
6 cd00216 PQQ_DH Dehydrogenases 99.6 3E-13 6.5E-18 151.6 33.9 259 36-308 51-383 (488)
7 COG3292 Predicted periplasmic 99.6 1.1E-14 2.4E-19 157.4 20.7 268 36-338 164-437 (671)
8 PF13360 PQQ_2: PQQ-like domai 99.5 1.8E-11 3.8E-16 122.8 29.1 220 55-306 2-237 (238)
9 TIGR03075 PQQ_enz_alc_DH PQQ-d 99.5 9.3E-11 2E-15 132.5 34.7 178 37-223 60-288 (527)
10 COG1520 FOG: WD40-like repeat 99.5 6.1E-11 1.3E-15 128.3 31.9 272 38-339 14-305 (370)
11 COG1520 FOG: WD40-like repeat 99.5 1.2E-10 2.6E-15 125.9 32.3 249 35-308 55-331 (370)
12 COG3292 Predicted periplasmic 99.4 7.9E-12 1.7E-16 135.7 19.1 271 37-339 206-483 (671)
13 PF13360 PQQ_2: PQQ-like domai 99.4 3.2E-10 6.8E-15 113.7 27.4 198 46-265 35-238 (238)
14 TIGR03075 PQQ_enz_alc_DH PQQ-d 99.2 8.9E-09 1.9E-13 116.5 27.4 223 64-305 46-339 (527)
15 TIGR03074 PQQ_membr_DH membran 99.1 3.5E-08 7.5E-13 115.4 26.4 221 37-265 185-485 (764)
16 KOG4649 PQQ (pyrrolo-quinoline 99.1 2.1E-08 4.6E-13 100.3 21.0 206 68-308 2-215 (354)
17 TIGR03074 PQQ_membr_DH membran 99.0 2.5E-07 5.3E-12 108.3 28.2 234 65-307 164-485 (764)
18 PF08450 SGL: SMP-30/Gluconola 98.9 1.4E-06 3.1E-11 88.6 28.8 221 40-290 3-245 (246)
19 COG4257 Vgb Streptogramin lyas 98.9 3.4E-07 7.3E-12 92.6 23.2 231 43-304 68-309 (353)
20 KOG4649 PQQ (pyrrolo-quinoline 98.9 6.1E-07 1.3E-11 90.0 24.4 240 29-300 86-351 (354)
21 PF08450 SGL: SMP-30/Gluconola 98.9 3.2E-06 7E-11 86.0 30.3 219 82-337 4-244 (246)
22 COG4257 Vgb Streptogramin lyas 98.8 6.6E-07 1.4E-11 90.5 20.4 230 84-347 68-302 (353)
23 COG3386 Gluconolactonase [Carb 98.0 0.003 6.4E-08 67.0 25.7 197 81-308 28-251 (307)
24 PLN02919 haloacid dehalogenase 97.9 0.024 5.2E-07 69.7 34.6 252 41-300 572-888 (1057)
25 COG4993 Gcd Glucose dehydrogen 97.9 0.00064 1.4E-08 75.8 18.4 178 134-314 209-449 (773)
26 COG3386 Gluconolactonase [Carb 97.9 0.0085 1.8E-07 63.5 25.7 229 33-291 21-276 (307)
27 cd00200 WD40 WD40 domain, foun 97.8 0.039 8.5E-07 54.1 33.8 254 39-334 12-276 (289)
28 cd00200 WD40 WD40 domain, foun 97.7 0.066 1.4E-06 52.5 28.4 223 43-297 58-288 (289)
29 PLN02919 haloacid dehalogenase 97.6 0.094 2E-06 64.6 32.9 245 83-336 573-875 (1057)
30 COG4993 Gcd Glucose dehydrogen 97.5 0.01 2.2E-07 66.6 20.1 215 38-263 206-494 (773)
31 PF14870 PSII_BNR: Photosynthe 96.9 0.42 9E-06 50.7 24.5 178 138-337 70-250 (302)
32 TIGR03866 PQQ_ABC_repeats PQQ- 96.7 0.91 2E-05 46.0 34.1 221 49-304 2-242 (300)
33 TIGR02604 Piru_Ver_Nterm putat 96.6 1.1 2.5E-05 48.5 26.0 61 41-103 18-96 (367)
34 PLN00033 photosystem II stabil 96.5 1.5 3.2E-05 48.3 26.3 143 136-297 246-396 (398)
35 PF14870 PSII_BNR: Photosynthe 96.5 0.92 2E-05 48.1 23.5 223 46-297 70-301 (302)
36 COG4946 Uncharacterized protei 96.2 2.7 5.9E-05 46.4 27.6 199 37-263 226-437 (668)
37 PRK13684 Ycf48-like protein; P 96.1 2.5 5.3E-05 45.4 30.0 255 46-335 55-318 (334)
38 PF13570 PQQ_3: PQQ-like domai 96.1 0.012 2.5E-07 42.7 4.9 39 259-300 1-39 (40)
39 KOG0278 Serine/threonine kinas 96.0 0.45 9.8E-06 48.4 17.0 146 128-294 144-291 (334)
40 PF05096 Glu_cyclase_2: Glutam 95.8 2.8 6E-05 43.5 22.9 177 82-289 49-249 (264)
41 PF07494 Reg_prop: Two compone 95.7 0.014 3.1E-07 37.7 3.5 22 317-338 2-23 (24)
42 PF13570 PQQ_3: PQQ-like domai 95.5 0.032 6.8E-07 40.4 5.1 28 186-215 13-40 (40)
43 TIGR03866 PQQ_ABC_repeats PQQ- 95.5 3.2 7E-05 41.9 32.3 230 41-305 35-285 (300)
44 PF05935 Arylsulfotrans: Aryls 95.4 0.96 2.1E-05 51.0 19.1 157 56-224 128-311 (477)
45 PF06977 SdiA-regulated: SdiA- 95.4 3.9 8.4E-05 42.2 24.9 203 37-254 22-247 (248)
46 KOG1446 Histone H3 (Lys4) meth 95.2 4.9 0.00011 42.2 32.1 246 28-305 7-268 (311)
47 PF05935 Arylsulfotrans: Aryls 94.8 1.8 3.8E-05 48.9 18.9 150 139-308 113-310 (477)
48 PRK13684 Ycf48-like protein; P 94.8 6.9 0.00015 42.0 24.2 104 190-299 220-330 (334)
49 PF01011 PQQ: PQQ enzyme repea 94.7 0.072 1.6E-06 38.2 4.9 29 197-225 1-29 (38)
50 KOG2048 WD40 repeat protein [G 94.6 11 0.00024 43.3 27.0 194 80-301 72-276 (691)
51 smart00564 PQQ beta-propeller 94.5 0.087 1.9E-06 36.0 4.8 27 196-222 6-32 (33)
52 PF07995 GSDH: Glucose / Sorbo 94.4 8.4 0.00018 41.3 26.0 60 237-296 269-331 (331)
53 KOG0316 Conserved WD40 repeat- 94.4 6.5 0.00014 40.0 19.4 177 96-305 80-263 (307)
54 PF05096 Glu_cyclase_2: Glutam 94.3 5.2 0.00011 41.5 19.1 100 196-300 55-157 (264)
55 KOG2055 WD40 repeat protein [G 94.0 2.5 5.4E-05 46.4 16.6 138 198-347 272-414 (514)
56 KOG0646 WD40 repeat protein [G 93.8 3 6.4E-05 45.8 16.6 188 46-259 91-309 (476)
57 PF14269 Arylsulfotran_2: Aryl 93.5 12 0.00026 39.7 23.7 199 57-266 26-297 (299)
58 PF01011 PQQ: PQQ enzyme repea 93.4 0.18 3.8E-06 36.2 4.7 29 239-268 1-29 (38)
59 TIGR02604 Piru_Ver_Nterm putat 93.4 3.6 7.8E-05 44.6 17.1 136 189-336 18-200 (367)
60 smart00564 PQQ beta-propeller 93.3 0.17 3.7E-06 34.5 4.3 29 43-71 2-32 (33)
61 PF07494 Reg_prop: Two compone 93.3 0.11 2.3E-06 33.6 3.0 20 272-291 5-24 (24)
62 KOG1520 Predicted alkaloid syn 93.3 7.5 0.00016 42.1 18.6 34 127-160 114-147 (376)
63 KOG2048 WD40 repeat protein [G 93.1 21 0.00045 41.2 26.6 191 88-304 37-238 (691)
64 TIGR02658 TTQ_MADH_Hv methylam 93.1 15 0.00033 39.8 29.8 232 47-306 57-337 (352)
65 COG4946 Uncharacterized protei 92.5 20 0.00044 39.8 21.3 103 196-303 331-435 (668)
66 PLN00033 photosystem II stabil 92.5 20 0.00044 39.6 31.4 132 196-335 249-386 (398)
67 KOG0318 WD40 repeat stress pro 92.3 23 0.0005 39.8 32.6 247 24-299 174-433 (603)
68 PF02239 Cytochrom_D1: Cytochr 92.2 20 0.00044 39.0 24.0 134 148-299 15-157 (369)
69 KOG4499 Ca2+-binding protein R 91.3 5.1 0.00011 40.8 13.5 44 276-327 216-261 (310)
70 KOG0639 Transducin-like enhanc 91.3 5.4 0.00012 44.4 14.7 131 196-338 520-652 (705)
71 PHA02713 hypothetical protein; 91.1 34 0.00075 39.4 25.6 90 207-301 433-534 (557)
72 PHA02713 hypothetical protein; 90.2 40 0.00087 38.8 23.5 183 46-259 302-535 (557)
73 KOG1520 Predicted alkaloid syn 89.9 33 0.00071 37.4 20.4 32 77-108 114-147 (376)
74 KOG0278 Serine/threonine kinas 89.8 12 0.00027 38.3 14.7 135 196-344 155-291 (334)
75 KOG0310 Conserved WD40 repeat- 89.4 33 0.00072 38.2 18.7 140 139-298 166-307 (487)
76 PF10282 Lactonase: Lactonase, 89.1 21 0.00045 38.3 17.3 137 198-334 1-158 (345)
77 PF02239 Cytochrom_D1: Cytochr 88.9 39 0.00084 36.8 23.7 191 55-268 15-213 (369)
78 KOG4499 Ca2+-binding protein R 88.7 1.7 3.7E-05 44.1 7.8 55 233-289 217-273 (310)
79 KOG1273 WD40 repeat protein [G 88.5 37 0.0008 36.1 19.6 268 43-339 30-322 (405)
80 KOG1446 Histone H3 (Lys4) meth 88.2 38 0.00082 35.8 25.5 198 79-307 16-225 (311)
81 PF08693 SKG6: Transmembrane a 87.4 0.22 4.9E-06 36.2 0.6 18 408-425 23-40 (40)
82 PF06977 SdiA-regulated: SdiA- 86.7 41 0.0009 34.6 22.7 200 80-297 24-247 (248)
83 PRK11028 6-phosphogluconolacto 85.8 50 0.0011 34.7 29.2 223 49-298 3-256 (330)
84 KOG1036 Mitotic spindle checkp 85.7 52 0.0011 34.8 25.9 183 81-296 17-203 (323)
85 PF03022 MRJP: Major royal jel 85.6 51 0.0011 34.6 25.4 68 41-108 5-99 (287)
86 KOG0318 WD40 repeat stress pro 85.5 71 0.0015 36.2 25.5 101 196-299 290-391 (603)
87 KOG1274 WD40 repeat protein [G 85.4 92 0.002 37.4 24.8 152 190-349 102-261 (933)
88 PF08553 VID27: VID27 cytoplas 84.5 82 0.0018 37.9 19.9 196 34-255 428-645 (794)
89 KOG1036 Mitotic spindle checkp 84.0 62 0.0013 34.2 24.4 232 36-300 13-262 (323)
90 KOG0310 Conserved WD40 repeat- 83.3 83 0.0018 35.2 20.6 222 80-337 71-298 (487)
91 PF10282 Lactonase: Lactonase, 83.0 70 0.0015 34.2 29.9 242 41-297 41-319 (345)
92 PF07433 DUF1513: Protein of u 82.1 75 0.0016 33.8 21.7 107 188-300 166-285 (305)
93 PRK04922 tolB translocation pr 81.4 92 0.002 34.4 23.8 109 190-304 297-415 (433)
94 PRK11028 6-phosphogluconolacto 81.3 75 0.0016 33.3 26.9 237 40-297 38-301 (330)
95 KOG2106 Uncharacterized conser 81.3 1E+02 0.0022 34.8 30.8 188 80-302 249-438 (626)
96 KOG2321 WD40 repeat protein [G 81.2 52 0.0011 37.6 15.5 117 89-223 146-267 (703)
97 KOG0285 Pleiotropic regulator 80.7 90 0.0019 33.8 24.0 135 196-334 289-424 (460)
98 KOG0639 Transducin-like enhanc 80.7 13 0.00027 41.6 10.4 115 185-302 467-584 (705)
99 COG3391 Uncharacterized conser 80.6 84 0.0018 34.3 17.3 105 196-305 85-195 (381)
100 PRK04792 tolB translocation pr 80.5 1E+02 0.0022 34.4 24.9 110 190-305 311-430 (448)
101 KOG0646 WD40 repeat protein [G 80.3 1E+02 0.0022 34.3 17.8 146 130-299 83-246 (476)
102 PF07995 GSDH: Glucose / Sorbo 79.6 91 0.002 33.3 16.9 112 189-302 6-158 (331)
103 PF08553 VID27: VID27 cytoplas 79.3 32 0.0007 41.2 14.1 132 196-337 492-636 (794)
104 PF02333 Phytase: Phytase; In 78.9 1.1E+02 0.0023 33.7 20.1 147 137-300 65-237 (381)
105 PF03022 MRJP: Major royal jel 78.6 91 0.002 32.7 25.4 76 189-266 5-104 (287)
106 KOG2395 Protein involved in va 78.5 1.2E+02 0.0027 34.5 17.2 148 137-299 342-499 (644)
107 KOG2055 WD40 repeat protein [G 77.9 1.2E+02 0.0027 33.8 19.4 146 85-256 265-416 (514)
108 KOG2106 Uncharacterized conser 77.4 1.3E+02 0.0029 34.0 25.7 229 37-304 247-483 (626)
109 PF12273 RCR: Chitin synthesis 75.7 0.7 1.5E-05 42.7 -0.7 30 399-431 2-31 (130)
110 KOG0293 WD40 repeat-containing 75.6 1.4E+02 0.0029 33.1 18.8 151 136-305 321-476 (519)
111 KOG4441 Proteins containing BT 75.4 1.7E+02 0.0036 34.1 22.0 101 196-302 380-501 (571)
112 TIGR03606 non_repeat_PQQ dehyd 74.8 1.5E+02 0.0033 33.3 18.4 102 190-293 35-167 (454)
113 PRK05137 tolB translocation pr 73.9 1.5E+02 0.0032 32.8 24.1 107 190-302 295-414 (435)
114 COG3823 Glutamine cyclotransfe 73.1 85 0.0018 31.8 12.9 100 196-300 55-158 (262)
115 PF06433 Me-amine-dh_H: Methyl 72.9 1.4E+02 0.0031 32.2 21.9 123 137-265 193-328 (342)
116 KOG2321 WD40 repeat protein [G 72.5 1.9E+02 0.0041 33.3 20.9 108 141-265 147-266 (703)
117 PF14269 Arylsulfotran_2: Aryl 72.2 83 0.0018 33.3 13.8 30 43-72 150-182 (299)
118 PLN00181 protein SPA1-RELATED; 70.6 2.4E+02 0.0052 33.9 30.6 141 140-300 546-690 (793)
119 PRK03629 tolB translocation pr 70.6 1.8E+02 0.0038 32.3 24.9 109 190-304 292-410 (429)
120 KOG0315 G-protein beta subunit 70.4 1.4E+02 0.003 31.0 23.3 216 57-301 21-246 (311)
121 KOG4659 Uncharacterized conser 68.5 3.3E+02 0.0072 34.6 25.1 203 42-248 370-613 (1899)
122 PHA02790 Kelch-like protein; P 68.4 2.1E+02 0.0045 32.3 24.2 166 88-289 271-453 (480)
123 PF15102 TMEM154: TMEM154 prot 67.9 3.4 7.3E-05 38.8 1.9 37 392-429 53-89 (146)
124 PF11770 GAPT: GRB2-binding ad 67.1 6.4 0.00014 37.0 3.5 29 412-440 24-52 (158)
125 KOG2395 Protein involved in va 66.7 2.4E+02 0.0052 32.3 17.2 151 84-255 340-498 (644)
126 KOG0296 Angio-associated migra 64.7 2.1E+02 0.0047 31.0 20.8 27 196-222 202-228 (399)
127 KOG0649 WD40 repeat protein [G 64.3 97 0.0021 32.0 11.4 74 188-263 118-192 (325)
128 PRK00888 ftsB cell division pr 64.3 7.8 0.00017 34.5 3.5 64 405-472 4-75 (105)
129 PRK00178 tolB translocation pr 64.0 2.3E+02 0.0049 31.1 25.7 108 190-303 292-409 (430)
130 PF09910 DUF2139: Uncharacteri 63.3 2.1E+02 0.0046 30.5 15.6 114 188-306 109-237 (339)
131 KOG0301 Phospholipase A2-activ 61.5 3.3E+02 0.0071 32.1 19.8 99 196-300 190-288 (745)
132 TIGR02658 TTQ_MADH_Hv methylam 61.3 2.5E+02 0.0054 30.6 23.7 73 191-265 254-338 (352)
133 COG2706 3-carboxymuconate cycl 60.3 2.5E+02 0.0054 30.3 22.6 164 83-262 150-328 (346)
134 KOG0266 WD40 repeat-containing 59.4 2.9E+02 0.0063 30.8 27.2 193 80-300 206-409 (456)
135 KOG1539 WD repeat protein [Gen 59.4 3.9E+02 0.0084 32.2 28.3 108 189-299 453-563 (910)
136 KOG0285 Pleiotropic regulator 59.4 2.7E+02 0.0058 30.4 21.8 188 80-298 154-346 (460)
137 COG4880 Secreted protein conta 58.7 3E+02 0.0065 30.7 15.1 61 89-164 112-175 (603)
138 KOG0274 Cdc4 and related F-box 58.4 3.4E+02 0.0074 31.3 21.6 183 88-302 218-402 (537)
139 KOG0299 U3 snoRNP-associated p 57.9 3.1E+02 0.0067 30.7 18.9 109 85-222 253-364 (479)
140 PF14517 Tachylectin: Tachylec 57.5 1.3E+02 0.0028 30.7 11.2 20 83-102 39-58 (229)
141 KOG4441 Proteins containing BT 56.9 3.7E+02 0.008 31.2 22.5 181 46-259 331-548 (571)
142 PF09425 CCT_2: Divergent CCT 55.9 5.6 0.00012 26.6 0.8 12 428-439 5-16 (27)
143 PF07889 DUF1664: Protein of u 55.7 25 0.00054 32.4 5.3 51 409-459 13-77 (126)
144 TIGR03606 non_repeat_PQQ dehyd 55.3 3.5E+02 0.0076 30.5 17.5 19 320-338 405-424 (454)
145 KOG0275 Conserved WD40 repeat- 54.4 2.4E+02 0.0053 30.2 12.7 109 196-306 360-474 (508)
146 PF01436 NHL: NHL repeat; Int 53.7 40 0.00087 22.3 4.7 23 230-252 4-26 (28)
147 PF13449 Phytase-like: Esteras 52.8 2E+02 0.0043 30.6 12.5 97 190-288 90-231 (326)
148 KOG0282 mRNA splicing factor [ 50.8 85 0.0018 35.1 9.2 92 196-290 270-361 (503)
149 PLN00181 protein SPA1-RELATED; 50.7 5.2E+02 0.011 31.1 36.4 175 96-300 554-738 (793)
150 KOG0296 Angio-associated migra 50.6 3.7E+02 0.008 29.3 28.3 58 248-308 307-365 (399)
151 PF14517 Tachylectin: Tachylec 49.8 1.3E+02 0.0029 30.6 9.9 65 38-102 82-155 (229)
152 PHA03098 kelch-like protein; P 49.3 4.4E+02 0.0095 29.8 19.8 106 46-164 341-470 (534)
153 KOG0266 WD40 repeat-containing 47.1 4.5E+02 0.0098 29.3 21.0 190 46-262 213-414 (456)
154 COG3391 Uncharacterized conser 46.8 4.2E+02 0.009 28.8 24.9 189 48-263 86-289 (381)
155 PRK02889 tolB translocation pr 46.8 4.3E+02 0.0094 29.1 26.7 109 190-304 289-407 (427)
156 COG3823 Glutamine cyclotransfe 46.5 3.3E+02 0.0072 27.7 16.6 152 87-268 54-215 (262)
157 KOG1539 WD repeat protein [Gen 44.9 6.4E+02 0.014 30.5 25.0 110 138-265 171-283 (910)
158 KOG1273 WD40 repeat protein [G 44.8 3.2E+02 0.0068 29.4 11.8 149 237-405 33-185 (405)
159 KOG0279 G protein beta subunit 44.6 4E+02 0.0088 28.1 23.9 193 79-300 65-262 (315)
160 PTZ00420 coronin; Provisional 43.9 5.8E+02 0.013 29.7 20.8 63 201-265 143-205 (568)
161 PF14779 BBS1: Ciliary BBSome 43.3 79 0.0017 32.8 7.3 58 197-255 196-256 (257)
162 PF14991 MLANA: Protein melan- 43.1 8 0.00017 34.7 0.0 36 405-440 31-74 (118)
163 TIGR02800 propeller_TolB tol-p 42.0 4.7E+02 0.01 28.1 25.8 64 196-261 289-358 (417)
164 PTZ00421 coronin; Provisional 40.4 6E+02 0.013 28.9 25.3 144 140-300 139-290 (493)
165 PHA03098 kelch-like protein; P 40.1 6E+02 0.013 28.7 24.3 184 46-264 293-516 (534)
166 KOG1027 Serine/threonine prote 39.9 1.3E+02 0.0029 36.1 9.1 106 134-266 102-210 (903)
167 KOG1274 WD40 repeat protein [G 38.7 8.1E+02 0.018 29.9 20.4 198 35-257 55-262 (933)
168 KOG0283 WD40 repeat-containing 37.7 7.8E+02 0.017 29.4 15.2 111 186-299 411-531 (712)
169 PF14779 BBS1: Ciliary BBSome 37.4 1.3E+02 0.0029 31.2 7.8 57 240-297 197-255 (257)
170 PTZ00421 coronin; Provisional 37.0 6.8E+02 0.015 28.5 27.9 68 197-265 139-206 (493)
171 KOG0275 Conserved WD40 repeat- 36.0 4.1E+02 0.0088 28.6 11.0 63 91-161 408-472 (508)
172 KOG0308 Conserved WD40 repeat- 34.8 8.1E+02 0.018 28.8 13.9 109 188-299 121-242 (735)
173 KOG0303 Actin-binding protein 34.2 6.9E+02 0.015 27.7 14.3 59 205-265 153-211 (472)
174 PRK04922 tolB translocation pr 34.0 6.7E+02 0.015 27.6 21.1 110 190-304 253-373 (433)
175 PF04478 Mid2: Mid2 like cell 33.7 46 0.00099 31.7 3.4 17 408-424 63-79 (154)
176 KOG0289 mRNA splicing factor [ 33.3 7.4E+02 0.016 27.8 14.9 173 230-416 306-484 (506)
177 PF02333 Phytase: Phytase; In 33.2 6.7E+02 0.014 27.7 12.7 102 237-344 66-183 (381)
178 PF10883 DUF2681: Protein of u 33.2 15 0.00033 31.6 0.2 18 412-429 14-31 (87)
179 PF08097 Toxin_26: Conotoxin T 32.9 16 0.00035 18.8 0.2 6 413-418 5-10 (11)
180 KOG0649 WD40 repeat protein [G 32.8 5.9E+02 0.013 26.5 16.7 75 130-220 116-192 (325)
181 PHA02790 Kelch-like protein; P 32.6 7.6E+02 0.016 27.7 24.4 165 46-245 270-453 (480)
182 KOG0308 Conserved WD40 repeat- 32.4 8.9E+02 0.019 28.5 16.1 102 196-299 182-284 (735)
183 KOG0282 mRNA splicing factor [ 31.5 8.1E+02 0.018 27.7 13.8 102 47-162 226-336 (503)
184 PF13449 Phytase-like: Esteras 31.1 6.6E+02 0.014 26.6 17.6 58 232-290 89-166 (326)
185 COG5399 Uncharacterized protei 31.1 28 0.00062 31.6 1.5 49 443-495 13-87 (139)
186 KOG0640 mRNA cleavage stimulat 30.4 3.3E+02 0.0071 29.2 9.2 101 188-289 220-323 (430)
187 PF03178 CPSF_A: CPSF A subuni 30.2 6.5E+02 0.014 26.3 15.3 69 229-302 90-161 (321)
188 KOG0273 Beta-transducin family 29.6 8.7E+02 0.019 27.5 16.0 193 196-420 246-446 (524)
189 PF13334 DUF4094: Domain of un 29.0 58 0.0012 28.5 3.1 15 447-461 77-91 (95)
190 PF14583 Pectate_lyase22: Olig 28.9 5.3E+02 0.011 28.5 11.0 82 205-289 59-142 (386)
191 COG4880 Secreted protein conta 28.9 4.2E+02 0.0091 29.7 10.0 47 196-246 149-196 (603)
192 PF05787 DUF839: Bacterial pro 27.7 4.9E+02 0.011 29.9 11.2 17 232-248 440-456 (524)
193 KOG1240 Protein kinase contain 27.7 1.4E+03 0.03 29.2 18.1 63 141-217 1165-1228(1431)
194 TIGR02976 phageshock_pspB phag 26.3 37 0.0008 28.4 1.3 62 398-460 4-66 (75)
195 PRK14471 F0F1 ATP synthase sub 26.1 30 0.00065 33.0 0.9 28 412-439 14-41 (164)
196 PF03088 Str_synth: Strictosid 25.8 4.3E+02 0.0094 22.7 8.0 48 205-254 36-84 (89)
197 TIGR02276 beta_rpt_yvtn 40-res 25.5 2.3E+02 0.005 19.5 5.4 31 238-268 3-33 (42)
198 PF05454 DAG1: Dystroglycan (D 25.5 23 0.0005 37.3 0.0 30 410-445 161-190 (290)
199 KOG0288 WD40 repeat protein Ti 25.5 9.7E+02 0.021 26.7 14.5 103 202-307 318-425 (459)
200 PF09340 NuA4: Histone acetylt 24.6 70 0.0015 27.1 2.7 33 429-461 2-34 (80)
201 KOG4659 Uncharacterized conser 24.2 7E+02 0.015 32.0 11.6 109 191-303 371-505 (1899)
202 TIGR02800 propeller_TolB tol-p 24.1 9.1E+02 0.02 25.9 23.9 69 36-107 189-268 (417)
203 PRK01742 tolB translocation pr 23.4 1E+03 0.022 26.1 23.0 92 189-292 296-393 (429)
204 KOG0286 G-protein beta subunit 22.8 9.5E+02 0.021 25.6 30.0 252 55-339 76-334 (343)
205 KOG2110 Uncharacterized conser 22.3 1.1E+03 0.023 26.0 12.5 93 205-298 152-246 (391)
206 TIGR03142 cytochro_ccmI cytoch 22.1 50 0.0011 29.8 1.5 26 444-469 37-62 (117)
207 KOG0271 Notchless-like WD40 re 22.0 1.1E+03 0.024 26.1 14.7 109 190-302 163-279 (480)
208 KOG4234 TPR repeat-containing 21.8 1E+02 0.0022 31.0 3.6 60 445-508 201-268 (271)
209 KOG0283 WD40 repeat-containing 21.2 1.5E+03 0.032 27.2 13.4 111 187-299 454-575 (712)
210 PRK05137 tolB translocation pr 21.2 1.1E+03 0.024 25.8 23.4 72 33-107 198-280 (435)
211 PF10940 DUF2618: Protein of u 21.1 34 0.00075 24.5 0.2 22 9-30 17-38 (40)
212 COG2706 3-carboxymuconate cycl 20.4 1.1E+03 0.024 25.6 29.8 244 43-304 46-328 (346)
213 KOG0643 Translation initiation 20.3 1E+03 0.022 25.1 21.7 73 193-265 156-228 (327)
No 1
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.78 E-value=2.1e-16 Score=172.11 Aligned_cols=265 Identities=21% Similarity=0.279 Sum_probs=180.7
Q ss_pred eeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeE
Q 006913 39 LSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQ 115 (626)
Q Consensus 39 ~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~ 115 (626)
.++|++ .++.||+++ ++.|+++|. +|+.+|+..... ....+|++. ++.+++++ ++.|+++|+++++ ..
T Consensus 113 ~~~~~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~-----~~ 183 (394)
T PRK11138 113 SGGVTV-AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG--EALSRPVVS-DGLVLVHTSNGMLQALNESDGA-----VK 183 (394)
T ss_pred ccccEE-ECCEEEEEcCCCEEEEEECCCCCCcccccCCC--ceecCCEEE-CCEEEEECCCCEEEEEEccCCC-----Ee
Confidence 355777 678999987 567999998 999999887653 345677774 67899988 6789999999886 35
Q ss_pred EEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCC-CCCccccceEEE
Q 006913 116 VFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTD-VDCYFTSVPVID 193 (626)
Q Consensus 116 ~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l-~~~~i~sspviD 193 (626)
|.+...... ........+ ...++.+++++.++.++++|. +|+.+|..... ...+ . ... .-..+..+|++.
T Consensus 184 W~~~~~~~~-~~~~~~~sP-~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~-~~~~----~-~~~~~~~~~~~sP~v~ 255 (394)
T PRK11138 184 WTVNLDVPS-LTLRGESAP-ATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRIS-QPTG----A-TEIDRLVDVDTTPVVV 255 (394)
T ss_pred eeecCCCCc-ccccCCCCC-EEECCEEEEEcCCCEEEEEEccCChhhheeccc-cCCC----c-cchhcccccCCCcEEE
Confidence 654322100 000001122 234678999998889999997 49999975110 0000 0 000 000123567777
Q ss_pred cCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCc
Q 006913 194 QCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSA 273 (626)
Q Consensus 194 ~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~ 273 (626)
++.||+++.+|.++++|..+|+..|....+.. ..+.. .+|+||+++. .+.++++|..+|+.+|...... ...
T Consensus 256 --~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~---~~~~~-~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~-~~~ 327 (394)
T PRK11138 256 --GGVVYALAYNGNLVALDLRSGQIVWKREYGSV---NDFAV-DGGRIYLVDQ-NDRVYALDTRGGVELWSQSDLL-HRL 327 (394)
T ss_pred --CCEEEEEEcCCeEEEEECCCCCEEEeecCCCc---cCcEE-ECCEEEEEcC-CCeEEEEECCCCcEEEcccccC-CCc
Confidence 78999999999999999999999998765431 12233 4789999985 5799999999999999754321 123
Q ss_pred eeeEEEeeCCeEEEEEcCCeEEEEcC-CCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEE
Q 006913 274 EYAPVVDSNGWISVGSLDGLLYSFSP-SGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILC 337 (626)
Q Consensus 274 ~sspvvD~dG~IWVGT~~gGLy~~d~-~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T 337 (626)
..+|++. +|.||+++.+|.|+++|+ +|+.+|..+... .. +.++|.+ .+|.||+.+
T Consensus 328 ~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~-~~-~~s~P~~------~~~~l~v~t 383 (394)
T PRK11138 328 LTAPVLY-NGYLVVGDSEGYLHWINREDGRFVAQQKVDS-SG-FLSEPVV------ADDKLLIQA 383 (394)
T ss_pred ccCCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcCC-Cc-ceeCCEE------ECCEEEEEe
Confidence 4567765 899999999999999997 599988765311 11 3445543 356777654
No 2
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.78 E-value=5.6e-16 Score=168.74 Aligned_cols=235 Identities=21% Similarity=0.265 Sum_probs=167.0
Q ss_pred eeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCC---------CcccCeEEecCCeEEEEE-CCeEEEEECCCC
Q 006913 40 SKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTC---------NIGTAPVHGGTGEVYIVA-ENRVLKVDLLKI 107 (626)
Q Consensus 40 Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~---------~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~ 107 (626)
++|++ .+|.||+++ ++.|+++|. +|+.+|++...... ....+|++ .++.||+++ ++.|+++|.+++
T Consensus 63 ~sPvv-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~v~v~~~~g~l~ald~~tG 140 (394)
T PRK11138 63 LHPAV-AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV-AGGKVYIGSEKGQVYALNAEDG 140 (394)
T ss_pred eccEE-ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE-ECCEEEEEcCCCEEEEEECCCC
Confidence 47888 678999987 578999998 89999998764310 11234565 468999998 688999999988
Q ss_pred ccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCcc
Q 006913 108 GTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYF 186 (626)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i 186 (626)
+. .|..... + .+...+...++.|++++.++.|+++|+ +|+.+|.+.... + ... ...
T Consensus 141 ~~-----~W~~~~~------~-~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---------~-~~~-~~~ 197 (394)
T PRK11138 141 EV-----AWQTKVA------G-EALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDV---------P-SLT-LRG 197 (394)
T ss_pred CC-----cccccCC------C-ceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCC---------C-ccc-ccC
Confidence 64 4543221 1 122233345789999988888999998 599999862100 0 000 001
Q ss_pred ccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCC----------CcceeeeeecCCeEEEEEcCCCEEEEEEC
Q 006913 187 TSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSF----------DKAFTLTPGNNGYLYVTIPVRALVLALDT 256 (626)
Q Consensus 187 ~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~----------~~v~sI~~D~dG~LwVGT~~gG~l~alD~ 256 (626)
..+|+++ ++.+++++.+|.++++|..+|+..|....... ....++.. .++.+|+++. ++.++++|.
T Consensus 198 ~~sP~v~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~-~g~l~ald~ 273 (394)
T PRK11138 198 ESAPATA--FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALAY-NGNLVALDL 273 (394)
T ss_pred CCCCEEE--CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEEc-CCeEEEEEC
Confidence 2467777 67899999999999999999999998643210 00122333 3789999885 579999999
Q ss_pred CCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEEee
Q 006913 257 SSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKFSK 308 (626)
Q Consensus 257 ~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~~~ 308 (626)
.+|+.+|....+. ...++.+ +|+||+++.++.|+++|.. |+..|...
T Consensus 274 ~tG~~~W~~~~~~----~~~~~~~-~~~vy~~~~~g~l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 274 RSGQIVWKREYGS----VNDFAVD-GGRIYLVDQNDRVYALDTRGGVELWSQS 321 (394)
T ss_pred CCCCEEEeecCCC----ccCcEEE-CCEEEEEcCCCeEEEEECCCCcEEEccc
Confidence 9999999876542 1235555 8999999999999999984 88888644
No 3
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.76 E-value=2.8e-15 Score=161.96 Aligned_cols=233 Identities=22% Similarity=0.312 Sum_probs=167.5
Q ss_pred eeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEE
Q 006913 40 SKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQV 116 (626)
Q Consensus 40 Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~ 116 (626)
++|++ .++.||+++ ++.|+++|. +|+.+|++.+.. ....+|+++ ++.+|+++ ++.|+++|..+++ ..|
T Consensus 59 ~~p~v-~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~--~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~-----~~W 129 (377)
T TIGR03300 59 LQPAV-AGGKVYAADADGTVVALDAETGKRLWRVDLDE--RLSGGVGAD-GGLVFVGTEKGEVIALDAEDGK-----ELW 129 (377)
T ss_pred cceEE-ECCEEEEECCCCeEEEEEccCCcEeeeecCCC--CcccceEEc-CCEEEEEcCCCEEEEEECCCCc-----Eee
Confidence 68888 578999998 568999997 999999987754 244567764 68999998 7899999998875 355
Q ss_pred EecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEEcC
Q 006913 117 FYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC 195 (626)
Q Consensus 117 ~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~ 195 (626)
..... + .+...+...++.+++++.++.|+++|. +|+.+|.+...... .... ...+|++.
T Consensus 130 ~~~~~------~-~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~--------~~~~---~~~sp~~~-- 189 (377)
T TIGR03300 130 RAKLS------S-EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA--------LTLR---GSASPVIA-- 189 (377)
T ss_pred eeccC------c-eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc--------eeec---CCCCCEEE--
Confidence 43221 1 122333345789999988888999997 59999986210000 0000 02456776
Q ss_pred CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCC----------CcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEE
Q 006913 196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSF----------DKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHK 265 (626)
Q Consensus 196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~----------~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~ 265 (626)
++.+++++.++.++++|+++|+..|....... ....++.. .++.+|+++. ++.++++|..+|+..|..
T Consensus 190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~-~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSY-QGRVAALDLRSGRVLWKR 267 (377)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEc-CCEEEEEECCCCcEEEee
Confidence 67899999889999999999999997543210 01112223 3789999885 579999999999999987
Q ss_pred ecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcC-CCCEEEEee
Q 006913 266 SVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSP-SGVLNKFSK 308 (626)
Q Consensus 266 ~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~-~g~~~~~~~ 308 (626)
.... ...|+++ +++||+++.++.|+++|. +|+.+|...
T Consensus 268 ~~~~----~~~p~~~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~ 306 (377)
T TIGR03300 268 DASS----YQGPAVD-DNRLYVTDADGVVVALDRRSGSELWKND 306 (377)
T ss_pred ccCC----ccCceEe-CCEEEEECCCCeEEEEECCCCcEEEccc
Confidence 6432 3456666 799999999999999998 488888653
No 4
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.75 E-value=2.9e-15 Score=161.82 Aligned_cols=275 Identities=23% Similarity=0.297 Sum_probs=182.5
Q ss_pred ccccc--cCCceeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEE
Q 006913 29 KVPYR--RSAFRLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVD 103 (626)
Q Consensus 29 ~~~~~--~~~~~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id 103 (626)
++.|. -...+.++|++ .++.+|+++ ++.|+++|. +|+.+|...... ....+|+++ ++.+++++ ++.|+++|
T Consensus 86 ~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~p~v~-~~~v~v~~~~g~l~a~d 161 (377)
T TIGR03300 86 KRLWRVDLDERLSGGVGA-DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS--EVLSPPLVA-NGLVVVRTNDGRLTALD 161 (377)
T ss_pred cEeeeecCCCCcccceEE-cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc--eeecCCEEE-CCEEEEECCCCeEEEEE
Confidence 44553 33456678888 578999987 678999998 999999887653 244566664 57888887 78899999
Q ss_pred CCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCC
Q 006913 104 LLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDV 182 (626)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~ 182 (626)
+.+++. .|.+........ ... ...+...++.+++++.++.++++|+ +|+.+|.... ....+......
T Consensus 162 ~~tG~~-----~W~~~~~~~~~~-~~~-~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~-----~~~~g~~~~~~ 229 (377)
T TIGR03300 162 AATGER-----LWTYSRVTPALT-LRG-SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRV-----ALPKGRTELER 229 (377)
T ss_pred cCCCce-----eeEEccCCCcee-ecC-CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecc-----ccCCCCCchhh
Confidence 988753 554432111000 000 1112234578999988889999997 5999997411 00000000000
Q ss_pred CCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEE
Q 006913 183 DCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNIL 262 (626)
Q Consensus 183 ~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~ 262 (626)
-..+..+|+++ ++.||+++.+|.++++|.++|++.|...... ..++.. .+++||+++. .+.++++|..+|+.+
T Consensus 230 ~~~~~~~p~~~--~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~---~~~p~~-~~~~vyv~~~-~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 230 LVDVDGDPVVD--GGQVYAVSYQGRVAALDLRSGRVLWKRDASS---YQGPAV-DDNRLYVTDA-DGVVVALDRRSGSEL 302 (377)
T ss_pred hhccCCccEEE--CCEEEEEEcCCEEEEEECCCCcEEEeeccCC---ccCceE-eCCEEEEECC-CCeEEEEECCCCcEE
Confidence 00123457776 7899999999999999999999999876432 122333 3789999984 579999999999999
Q ss_pred EEEe-cCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEE
Q 006913 263 WHKS-VGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILC 337 (626)
Q Consensus 263 w~~~-~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T 337 (626)
|... .. .....+|++. ++.||+++.+|.|+++|+. |+.+|..+.. ...+..+|.+ .++.||+.+
T Consensus 303 W~~~~~~--~~~~ssp~i~-g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~--~~~~~~sp~~------~~~~l~v~~ 368 (377)
T TIGR03300 303 WKNDELK--YRQLTAPAVV-GGYLVVGDFEGYLHWLSREDGSFVARLKTD--GSGIASPPVV------VGDGLLVQT 368 (377)
T ss_pred Ecccccc--CCccccCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcC--CCccccCCEE------ECCEEEEEe
Confidence 9763 22 2234567665 7899999999999999985 8998866521 1113445543 345676554
No 5
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.65 E-value=1.6e-13 Score=153.66 Aligned_cols=267 Identities=17% Similarity=0.199 Sum_probs=172.0
Q ss_pred eC-CEEEEEe-CCcEEEEcC-CCCEEEEEeCCCC----CCcccCeEEecCCeEEEEE----------CCeEEEEECCCCc
Q 006913 46 ED-GKIYACS-EKTLFAFES-NGTIAWSLDLDFT----CNIGTAPVHGGTGEVYIVA----------ENRVLKVDLLKIG 108 (626)
Q Consensus 46 ~d-G~IwIgS-dggL~a~d~-~G~~~W~~~~~~~----~~i~~sp~iD~dG~IwVgT----------~ggL~~id~~~~~ 108 (626)
.+ +.||+++ ++.|+++|. +|+.+|.+..... ..+..+|.++. +.+|+++ ++.|+++|..+++
T Consensus 108 ~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 108 WDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred ccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCc
Confidence 35 8999988 678999998 9999999876431 01356777754 8888886 3579999999986
Q ss_pred cccceeEEEecCCCCC---------------CCCCCeeEEEEEE-cCCeEEEEEcCC------------------eEEEE
Q 006913 109 TSESATQVFYGTGSGK---------------GGTGAIAGIAVST-SSSSVYINVKGR------------------ALFAF 154 (626)
Q Consensus 109 ~~~~~~~~~~~~~~~~---------------~~~~~~I~s~~~d-~dG~LwIgT~~g------------------GL~a~ 154 (626)
. .|.+...... ...+.+...+..+ .++.||+++.++ .|+++
T Consensus 187 ~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Al 261 (488)
T cd00216 187 L-----LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVAL 261 (488)
T ss_pred e-----eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEE
Confidence 4 5544321100 0001122234444 578999997543 59999
Q ss_pred eCC-CcEEEEECCcccccccccccccCCCCCccccceEEEc---CCC----eEEEEcCCCeEEEEeCCCCeEEEEEcCCC
Q 006913 155 MTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ---CEG----SIYISNTQGELYSLSAHSPYFNWIQDLSS 226 (626)
Q Consensus 155 d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~---~dG----~LwIGT~~GgL~~ld~~tg~~~w~~~~~s 226 (626)
|.. |+.+|.+.... ...-.....++|.+.. -++ .|++++.+|.|++||.++|+..|......
T Consensus 262 d~~tG~~~W~~~~~~----------~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~ 331 (488)
T cd00216 262 DADTGKVKWFYQTTP----------HDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE 331 (488)
T ss_pred cCCCCCEEEEeeCCC----------CCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec
Confidence 984 99999862100 0000000112233210 022 48999999999999999999999865431
Q ss_pred CCcceeeeeecCCeEEEEEc-----------------CCCEEEEEECCCCcEEEEEecCCC-------CCceeeEEEeeC
Q 006913 227 FDKAFTLTPGNNGYLYVTIP-----------------VRALVLALDTSSGNILWHKSVGPL-------GSAEYAPVVDSN 282 (626)
Q Consensus 227 ~~~v~sI~~D~dG~LwVGT~-----------------~gG~l~alD~~tG~~~w~~~~~~l-------~~~~sspvvD~d 282 (626)
. .+..+ .+.+|+++. ..+.++++|..+|+.+|+...... .....++....+
T Consensus 332 ~----~~~~~-~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g 406 (488)
T cd00216 332 Q----PMAYD-PGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAG 406 (488)
T ss_pred c----ccccC-CceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecC
Confidence 1 11222 267777531 246899999999999999866510 011223333347
Q ss_pred CeEEEEEcCCeEEEEcC-CCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeee
Q 006913 283 GWISVGSLDGLLYSFSP-SGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMV 340 (626)
Q Consensus 283 G~IWVGT~~gGLy~~d~-~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~ 340 (626)
+.||+|+.+|.||++|. +|+.+|..+. ...+..+|.+ ...+|.+||++...
T Consensus 407 ~~v~~g~~dG~l~ald~~tG~~lW~~~~---~~~~~a~P~~----~~~~g~~yv~~~~g 458 (488)
T cd00216 407 NLVFAGAADGYFRAFDATTGKELWKFRT---PSGIQATPMT----YEVNGKQYVGVMVG 458 (488)
T ss_pred CeEEEECCCCeEEEEECCCCceeeEEEC---CCCceEcCEE----EEeCCEEEEEEEec
Confidence 89999999999999997 5999998662 2223455542 34579999988764
No 6
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.64 E-value=3e-13 Score=151.58 Aligned_cols=259 Identities=18% Similarity=0.275 Sum_probs=163.7
Q ss_pred CceeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCC-----CCccc-CeEEecCCeEEEEE-CCeEEEEECCC
Q 006913 36 AFRLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFT-----CNIGT-APVHGGTGEVYIVA-ENRVLKVDLLK 106 (626)
Q Consensus 36 ~~~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~-----~~i~~-sp~iD~dG~IwVgT-~ggL~~id~~~ 106 (626)
..+.++|++ .+|.||+++ ++.|+++|. +|+.+|++..... ..... .+.+..++.||+++ ++.|+++|.++
T Consensus 51 ~~~~~sPvv-~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~T 129 (488)
T cd00216 51 RGQEGTPLV-VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAET 129 (488)
T ss_pred CCcccCCEE-ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCC
Confidence 468889999 688999997 678999998 9999998866421 01111 12222238999998 78999999998
Q ss_pred CccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc---------CCeEEEEeC-CCcEEEEECCcccc-ccccc
Q 006913 107 IGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK---------GRALFAFMT-HGQLLWSAGPVLDQ-LGYRQ 175 (626)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~---------~gGL~a~d~-~G~~~w~~~~~~~~-~~~~~ 175 (626)
++ ..|.+....... ....+...+...++.+++++. .+.|+++|. +|+.+|.+...... ...+.
T Consensus 130 G~-----~~W~~~~~~~~~-~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~ 203 (488)
T cd00216 130 GK-----QVWKFGNNDQVP-PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPT 203 (488)
T ss_pred CC-----EeeeecCCCCcC-cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCC
Confidence 86 466554322100 011122333334588888863 467999998 59999986221000 00000
Q ss_pred c-cc---cCCCCCccccceEEEcCCCeEEEEcCCC------------------eEEEEeCCCCeEEEEEcCCCC-----C
Q 006913 176 G-CT---KTDVDCYFTSVPVIDQCEGSIYISNTQG------------------ELYSLSAHSPYFNWIQDLSSF-----D 228 (626)
Q Consensus 176 ~-~~---~~l~~~~i~sspviD~~dG~LwIGT~~G------------------gL~~ld~~tg~~~w~~~~~s~-----~ 228 (626)
. .. ....+..+..+|++|..++.||+++.++ .|++||.++|+..|.+..... .
T Consensus 204 ~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~ 283 (488)
T cd00216 204 WGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYD 283 (488)
T ss_pred CCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccc
Confidence 0 00 0001122345688874368899998654 699999999999998654311 1
Q ss_pred c--ceeee--eecCC----eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEE-----------
Q 006913 229 K--AFTLT--PGNNG----YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGS----------- 289 (626)
Q Consensus 229 ~--v~sI~--~D~dG----~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT----------- 289 (626)
. ...+. .+.+| .+++++. +|.++++|..+|+.+|...... ..+..+ .+.+|+++
T Consensus 284 ~~s~p~~~~~~~~~g~~~~~V~~g~~-~G~l~ald~~tG~~~W~~~~~~-----~~~~~~-~~~vyv~~~~~~~~~~~~~ 356 (488)
T cd00216 284 GPNQPSLADIKPKDGKPVPAIVHAPK-NGFFYVLDRTTGKLISARPEVE-----QPMAYD-PGLVYLGAFHIPLGLPPQK 356 (488)
T ss_pred cCCCCeEEeccccCCCeeEEEEEECC-CceEEEEECCCCcEeeEeEeec-----cccccC-CceEEEccccccccCcccc
Confidence 1 11111 11344 3888874 5799999999999999875431 112223 36777754
Q ss_pred -------cCCeEEEEcC-CCCEEEEee
Q 006913 290 -------LDGLLYSFSP-SGVLNKFSK 308 (626)
Q Consensus 290 -------~~gGLy~~d~-~g~~~~~~~ 308 (626)
.++.|+++|. +|+.+|...
T Consensus 357 ~~~~~~~~~G~l~AlD~~tG~~~W~~~ 383 (488)
T cd00216 357 KKRCKKPGKGGLAALDPKTGKVVWEKR 383 (488)
T ss_pred cCCCCCCCceEEEEEeCCCCcEeeEee
Confidence 3578999997 599999765
No 7
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.64 E-value=1.1e-14 Score=157.44 Aligned_cols=268 Identities=11% Similarity=0.028 Sum_probs=166.6
Q ss_pred CceeeeeEEeeCCEEEEEeCCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEECCeEEEEECCCCcccccee
Q 006913 36 AFRLSKPLIGEDGKIYACSEKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESAT 114 (626)
Q Consensus 36 ~~~~Sspvid~dG~IwIgSdggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT~ggL~~id~~~~~~~~~~~ 114 (626)
.-.....+.|.+|.+||||++||++||. .|+..- ...+.....+..++.|.+|++||||+.|+++.++.+..+ .
T Consensus 164 d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalq-l~s~~~dk~I~al~~d~qg~LWVGTdqGv~~~e~~G~~~----s 238 (671)
T COG3292 164 DTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQ-LASPPLDKAINALIADVQGRLWVGTDQGVYLQEAEGWRA----S 238 (671)
T ss_pred CccceeeeeeccCcEEEecCCcceEEccccceEEE-cCCCcchhhHHHHHHHhcCcEEEEeccceEEEchhhccc----c
Confidence 3445667889999999999999999998 887642 221111123556677889999999999999999877321 1
Q ss_pred EEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEE
Q 006913 115 QVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVID 193 (626)
Q Consensus 115 ~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD 193 (626)
.+. ...+...|.....|.+|.+||||. +|+..+.. ++.+.... . +. | ..-.. ..+...|
T Consensus 239 n~~------~~lp~~~I~ll~qD~qG~lWiGTe-nGl~r~~l~rq~Lq~~~-~-------~~-~---l~~S~-vnsL~~D 298 (671)
T COG3292 239 NWG------PMLPSGNILLLVQDAQGELWIGTE-NGLWRTRLPRQGLQIPL-S-------KM-H---LGVST-VNSLWLD 298 (671)
T ss_pred ccC------CCCcchheeeeecccCCCEEEeec-ccceeEecCCCCccccc-c-------cc-C---Ccccc-ccceeec
Confidence 111 122334677888899999999997 57877764 44332211 0 00 0 00001 2445678
Q ss_pred cCCCeEEEEcCCCeEEEEeCCCCeEE-EEEcCCC--CCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEE-EecCC
Q 006913 194 QCEGSIYISNTQGELYSLSAHSPYFN-WIQDLSS--FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWH-KSVGP 269 (626)
Q Consensus 194 ~~dG~LwIGT~~GgL~~ld~~tg~~~-w~~~~~s--~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~-~~~~~ 269 (626)
. +|.||++++++ +..|....-... ...+..+ ...........+..++..+. .+.+...+..+|..... +...+
T Consensus 299 ~-dGsLWv~t~~g-iv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns-~g~L~van~stG~~v~sv~q~Rg 375 (671)
T COG3292 299 T-DGSLWVGTYGG-IVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS-IGELMVANGSTGELVRSVHQLRG 375 (671)
T ss_pred c-CCCEeeeccCc-eEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc-cceEEEecCCCCcEEEEeeeccc
Confidence 5 99999999775 566644321110 1112211 11111111223567787764 45777788888876543 22221
Q ss_pred CCCceeeEEEeeCCeEEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEe
Q 006913 270 LGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCL 338 (626)
Q Consensus 270 l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~ 338 (626)
..++...+|++|.+|+||.+.||-+++.+. .|-.- ...++ +++..|.+|++|.++++||+|.
T Consensus 376 --~nit~~~~d~~g~lWlgs~q~GLsrl~n~n--~~avl-de~ag--l~ss~V~aived~dnsLWIGTs 437 (671)
T COG3292 376 --MNITTTLEDSRGRLWLGSMQNGLSRLDNKN--EWAVL-DEDAG--LPSSEVSAIVEDPDNSLWIGTS 437 (671)
T ss_pred --cccchhhhccCCcEEEEecccchhhhccCC--ccccc-ccccC--CcccceeeeeecCCCCEEEecc
Confidence 234555678899999999999999997643 22111 11233 5667788999999999999875
No 8
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.51 E-value=1.8e-11 Score=122.81 Aligned_cols=220 Identities=23% Similarity=0.348 Sum_probs=148.7
Q ss_pred CCcEEEEcC-CCCEEEEEeCCCC-CCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCee
Q 006913 55 EKTLFAFES-NGTIAWSLDLDFT-CNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIA 131 (626)
Q Consensus 55 dggL~a~d~-~G~~~W~~~~~~~-~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I 131 (626)
++.|.++|. +|+.+|...+... ......++ ..++.+|+++ ++.|+++|..+++ ..|.+.... .+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~l~~~d~~tG~-----~~W~~~~~~-------~~ 68 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVYVASGDGNLYALDAKTGK-----VLWRFDLPG-------PI 68 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEEEEETTSEEEEEETTTSE-----EEEEEECSS-------CG
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEEEEcCCCEEEEEECCCCC-----EEEEeeccc-------cc
Confidence 356899998 9999999876321 11122233 3578999997 8999999998875 456543311 11
Q ss_pred EEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEE-ECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEE
Q 006913 132 GIAVSTSSSSVYINVKGRALFAFMT-HGQLLWS-AGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELY 209 (626)
Q Consensus 132 ~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~-~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~ 209 (626)
...+...++.|++++.++.|+++|. +|+++|. ..... ... .......+.++ ++.+++++.++.|+
T Consensus 69 ~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~----------~~~-~~~~~~~~~~~--~~~~~~~~~~g~l~ 135 (238)
T PF13360_consen 69 SGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS----------PPA-GVRSSSSPAVD--GDRLYVGTSSGKLV 135 (238)
T ss_dssp GSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS----------CTC-STB--SEEEEE--TTEEEEEETCSEEE
T ss_pred cceeeecccccccccceeeeEecccCCcceeeeeccccc----------ccc-ccccccCceEe--cCEEEEEeccCcEE
Confidence 1123567889999998788999995 6999998 31100 000 01112335555 78899998889999
Q ss_pred EEeCCCCeEEEEEcCCCCC--c--------ceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEE
Q 006913 210 SLSAHSPYFNWIQDLSSFD--K--------AFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVV 279 (626)
Q Consensus 210 ~ld~~tg~~~w~~~~~s~~--~--------v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvv 279 (626)
++|+++|+..|........ . ...+.. .+|.+|+++.. +.++++|..+|+.+|..... .....+..
T Consensus 136 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~-g~~~~~d~~tg~~~w~~~~~---~~~~~~~~ 210 (238)
T PF13360_consen 136 ALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDGRVYVSSGD-GRVVAVDLATGEKLWSKPIS---GIYSLPSV 210 (238)
T ss_dssp EEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTTEEEEECCT-SSEEEEETTTTEEEEEECSS----ECECEEC
T ss_pred EEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECCEEEEEcCC-CeEEEEECCCCCEEEEecCC---CccCCcee
Confidence 9999999999998653211 0 122223 35699998854 44677799999988965533 22232444
Q ss_pred eeCCeEEEEEcCCeEEEEcCC-CCEEEE
Q 006913 280 DSNGWISVGSLDGLLYSFSPS-GVLNKF 306 (626)
Q Consensus 280 D~dG~IWVGT~~gGLy~~d~~-g~~~~~ 306 (626)
+ ++.||+++.++.|+++|.. |+..|.
T Consensus 211 ~-~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 211 D-GGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp C-CTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred e-CCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 4 8999999988999999974 888885
No 9
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=99.48 E-value=9.3e-11 Score=132.48 Aligned_cols=178 Identities=17% Similarity=0.241 Sum_probs=115.2
Q ss_pred ceeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCc---------ccCeEEecCCeEEEEE-CCeEEEEEC
Q 006913 37 FRLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNI---------GTAPVHGGTGEVYIVA-ENRVLKVDL 104 (626)
Q Consensus 37 ~~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i---------~~sp~iD~dG~IwVgT-~ggL~~id~ 104 (626)
.+.++|++ .+|.||+++ ++.|+++|. +|+.+|++........ ...+.+ .++.||+++ ++.|+++|.
T Consensus 60 g~~stPvv-~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av-~~~~v~v~t~dg~l~ALDa 137 (527)
T TIGR03075 60 GQESQPLV-VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL-YDGKVFFGTLDARLVALDA 137 (527)
T ss_pred CcccCCEE-ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE-ECCEEEEEcCCCEEEEEEC
Confidence 36789999 689999987 678999998 9999999865321001 122344 457899998 899999999
Q ss_pred CCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc------CCeEEEEeC-CCcEEEEECCcccccc-----
Q 006913 105 LKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK------GRALFAFMT-HGQLLWSAGPVLDQLG----- 172 (626)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~------~gGL~a~d~-~G~~~w~~~~~~~~~~----- 172 (626)
.+++. .|........ ....+...+...++.|++++. .+.|+++|. +|+.+|.+........
T Consensus 138 ~TGk~-----~W~~~~~~~~--~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~ 210 (527)
T TIGR03075 138 KTGKV-----VWSKKNGDYK--AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKA 210 (527)
T ss_pred CCCCE-----Eeeccccccc--ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccc
Confidence 99863 5544321111 011223334445789999864 467999998 5999998633211100
Q ss_pred -----cccc------cccCCCCCccccceEEEcCCCeEEEEcCC-----C-----------eEEEEeCCCCeEEEEEc
Q 006913 173 -----YRQG------CTKTDVDCYFTSVPVIDQCEGSIYISNTQ-----G-----------ELYSLSAHSPYFNWIQD 223 (626)
Q Consensus 173 -----~~~~------~~~~l~~~~i~sspviD~~dG~LwIGT~~-----G-----------gL~~ld~~tg~~~w~~~ 223 (626)
...+ ......+.++...+.+|...|.||+++.+ + .|+++|.+||+++|.+.
T Consensus 211 ~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q 288 (527)
T TIGR03075 211 DKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQ 288 (527)
T ss_pred ccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeee
Confidence 0000 00001123455667888657889999843 2 68999999999999854
No 10
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=99.48 E-value=6.1e-11 Score=128.25 Aligned_cols=272 Identities=22% Similarity=0.342 Sum_probs=174.4
Q ss_pred eeeeeEEeeCCEEEEEe-C-Cc-EEEEcCCCCEEEEEeCCCC-CCcccCeE-EecCCeEEEEE-CCeEEEEECCCCcccc
Q 006913 38 RLSKPLIGEDGKIYACS-E-KT-LFAFESNGTIAWSLDLDFT-CNIGTAPV-HGGTGEVYIVA-ENRVLKVDLLKIGTSE 111 (626)
Q Consensus 38 ~~Sspvid~dG~IwIgS-d-gg-L~a~d~~G~~~W~~~~~~~-~~i~~sp~-iD~dG~IwVgT-~ggL~~id~~~~~~~~ 111 (626)
+.+.|+. ..+..|... . +. .+....+|..+|....... ......+. .+.+|++|+++ ++.|+++|++++..
T Consensus 14 ~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~dg~v~~~~~~G~i~A~d~~~g~~-- 90 (370)
T COG1520 14 LGATPVL-AAGTDYLVAVGADLVAVANNTSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTRDGNIFALNPDTGLV-- 90 (370)
T ss_pred EEeeeec-CCCceEEeeccCCceEEEcccCcceeeeeecccCccceEeccccEeeCCeEEEecCCCcEEEEeCCCCcE--
Confidence 3344444 444666664 2 22 3333348999998654321 12344553 67899999998 67799999999752
Q ss_pred ceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccce
Q 006913 112 SATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVP 190 (626)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ssp 190 (626)
.|...... ....+.......+|+||+++.++-++|+|. +|+.+|.+.. + . . -.+...+
T Consensus 91 ---~W~~~~~~----~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~-----~------~--~-~~~~~~~ 149 (370)
T COG1520 91 ---KWSYPLLG----AVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNV-----G------G--S-PYYASPP 149 (370)
T ss_pred ---EecccCcC----cceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEec-----C------C--C-eEEecCc
Confidence 45432211 012334444455999999998777999998 6999998611 0 0 0 0122334
Q ss_pred EEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC---CCcceeeeeecCCeEEEEEcC-CCEEEEEECCCCcEEEEE-
Q 006913 191 VIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS---FDKAFTLTPGNNGYLYVTIPV-RALVLALDTSSGNILWHK- 265 (626)
Q Consensus 191 viD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s---~~~v~sI~~D~dG~LwVGT~~-gG~l~alD~~tG~~~w~~- 265 (626)
+.. ++.+|+++.++.++++|.++|...|...... ......+. ..++.+|++... .+.++++|+.+|.+.|..
T Consensus 150 v~~--~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 150 VVG--DGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred EEc--CcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 554 7999999878899999999999999965432 11111122 468899999852 458999999999999984
Q ss_pred ---ecCCCC----CceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEE
Q 006913 266 ---SVGPLG----SAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILC 337 (626)
Q Consensus 266 ---~~~~l~----~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T 337 (626)
..+... ..+....+..++.+|.+..++.++|++.. |+.+|..... ..+..++.+.+-....+|.+|++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~---~~~~~~~~~~~~~~~~dG~v~~~~ 303 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG---GSVQGSGLYTTPVAGADGKVYIGF 303 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc---cEeccCCeeEEeecCCCccEEEEE
Confidence 222110 11222334447888999988899999974 9999987632 112334433333445799999886
Q ss_pred ee
Q 006913 338 LM 339 (626)
Q Consensus 338 ~t 339 (626)
..
T Consensus 304 ~~ 305 (370)
T COG1520 304 TD 305 (370)
T ss_pred ec
Confidence 54
No 11
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=99.46 E-value=1.2e-10 Score=125.92 Aligned_cols=249 Identities=21% Similarity=0.373 Sum_probs=169.9
Q ss_pred CCceeeeeE-EeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccc
Q 006913 35 SAFRLSKPL-IGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTS 110 (626)
Q Consensus 35 ~~~~~Sspv-id~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~ 110 (626)
....++.|. ++.+|+||+++ ++.++++|. +|+.+|.............|....+|+||+++ ++.++++|..++.
T Consensus 55 ~~~~~~~~~~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~-- 132 (370)
T COG1520 55 GGGIYAGPAPADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGT-- 132 (370)
T ss_pred ccceEeccccEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCc--
Confidence 446788884 77999999997 567999999 88889987664311245567776799999999 4559999997664
Q ss_pred cceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccc
Q 006913 111 ESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSV 189 (626)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ss 189 (626)
..|.+.... . ..+...+...++.+|+++.++-++++|.+ |+.+|.++.... +. ..+..+
T Consensus 133 ---~~W~~~~~~----~-~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~-----------~~~~~~ 192 (370)
T COG1520 133 ---LVWSRNVGG----S-PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LS-----------LSIYGS 192 (370)
T ss_pred ---EEEEEecCC----C-eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-cc-----------cccccC
Confidence 356543321 0 23444566788999999877889999986 999998622100 01 112244
Q ss_pred eEEEcCCCeEEEEcC--CCeEEEEeCCCCeEEEEEc----CCCC-----CcceeeeeecCCeEEEEEcCCCEEEEEECCC
Q 006913 190 PVIDQCEGSIYISNT--QGELYSLSAHSPYFNWIQD----LSSF-----DKAFTLTPGNNGYLYVTIPVRALVLALDTSS 258 (626)
Q Consensus 190 pviD~~dG~LwIGT~--~GgL~~ld~~tg~~~w~~~----~~s~-----~~v~sI~~D~dG~LwVGT~~gG~l~alD~~t 258 (626)
+.+. ++.+|+++. ++.++++|+++|.+.|... .+.. ..+..-.+..++.+|.+.. ++.++++|..+
T Consensus 193 ~~~~--~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~-~g~~~~l~~~~ 269 (370)
T COG1520 193 PAIA--SGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSY-GGKLLCLDADT 269 (370)
T ss_pred ceee--cceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEec-CCeEEEEEcCC
Confidence 5543 789999987 5679999999999999842 2211 0111122344667777774 46799999999
Q ss_pred CcEEEEEecC---CCCCceeeEEEeeCCeEEEEEcC------CeEEEEcC-CCCE--EEEee
Q 006913 259 GNILWHKSVG---PLGSAEYAPVVDSNGWISVGSLD------GLLYSFSP-SGVL--NKFSK 308 (626)
Q Consensus 259 G~~~w~~~~~---~l~~~~sspvvD~dG~IWVGT~~------gGLy~~d~-~g~~--~~~~~ 308 (626)
|+..|.+... .............+|.++++... +.+++++. .+.. .|+..
T Consensus 270 G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~w~~~ 331 (370)
T COG1520 270 GELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLYALADVPGGTLLKWSYP 331 (370)
T ss_pred CceEEEEecccEeccCCeeEEeecCCCccEEEEEeccccccccceEEEeccCCCeeEEEEEe
Confidence 9999998774 11223444455568999998742 45788886 4555 67655
No 12
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.41 E-value=7.9e-12 Score=135.66 Aligned_cols=271 Identities=16% Similarity=0.152 Sum_probs=161.9
Q ss_pred ceeeeeEEeeCCEEEEEeCCcEEEEcCCCCEEEEEeCCC---CCCcccCeEEecCCeEEEEECCeEEEEECCCCccccce
Q 006913 37 FRLSKPLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDF---TCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESA 113 (626)
Q Consensus 37 ~~~Sspvid~dG~IwIgSdggL~a~d~~G~~~W~~~~~~---~~~i~~sp~iD~dG~IwVgT~ggL~~id~~~~~~~~~~ 113 (626)
......+.|..|++||||+.|++..+..| |...-.. ....+.....|.+|.+|+||++|+.++....+..
T Consensus 206 k~I~al~~d~qg~LWVGTdqGv~~~e~~G---~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~L---- 278 (671)
T COG3292 206 KAINALIADVQGRLWVGTDQGVYLQEAEG---WRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGL---- 278 (671)
T ss_pred hhHHHHHHHhcCcEEEEeccceEEEchhh---ccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCc----
Confidence 34445566778999999999999999876 3222111 0123556677999999999999988776554421
Q ss_pred eEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEE
Q 006913 114 TQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVID 193 (626)
Q Consensus 114 ~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD 193 (626)
.+ ...+. ...-..+.....|.+|.||+++.+ |+..|.... |.....++. .. .....+...++..+
T Consensus 279 -q~--~~~~~-~l~~S~vnsL~~D~dGsLWv~t~~-giv~~~~a~---w~~ma~in~---~d----G~v~~~~~~a~~ll 343 (671)
T COG3292 279 -QI--PLSKM-HLGVSTVNSLWLDTDGSLWVGTYG-GIVRYLTAD---WKRMAVIND---SD----GGVSQYEAVAPALL 343 (671)
T ss_pred -cc--ccccc-CCccccccceeeccCCCEeeeccC-ceEEEecch---hhheeeeec---CC----CchhhhhccCchhc
Confidence 11 11110 111123455678999999999975 566665421 221000000 00 01111122334444
Q ss_pred cCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEE---ecCCC
Q 006913 194 QCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHK---SVGPL 270 (626)
Q Consensus 194 ~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~---~~~~l 270 (626)
+..++..+..|-+...+..+|........--...+...+.|.+|.+|+|+.. .++..++.++ .|.. ..+.+
T Consensus 344 --~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q-~GLsrl~n~n---~~avlde~agl~ 417 (671)
T COG3292 344 --SWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQ-NGLSRLDNKN---EWAVLDEDAGLP 417 (671)
T ss_pred --ccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEecc-cchhhhccCC---cccccccccCCc
Confidence 5678888888888888888886644322111123455667889999999964 3555566444 3321 12222
Q ss_pred CCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEee
Q 006913 271 GSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLM 339 (626)
Q Consensus 271 ~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t 339 (626)
...++.+++|.++++||||. +||...++. ++....... .+. ......+..|-.+.+|.+|++.+.
T Consensus 418 ss~V~aived~dnsLWIGTs-~Glvk~~pe~~~v~n~ln~--~~~-~l~~s~~~~lg~~~~g~Lw~a~g~ 483 (671)
T COG3292 418 SSEVSAIVEDPDNSLWIGTS-GGLVKRDPESGRVLNLLNP--GSH-GLDGSRVEQLGLGPDGRLWLAAGS 483 (671)
T ss_pred ccceeeeeecCCCCEEEecc-CCeEecCccccchhccccc--ccC-cCCcchhhhhccCCCCceEEEecc
Confidence 34467789999999999995 688888876 444433221 111 133344566778899999988754
No 13
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.38 E-value=3.2e-10 Score=113.71 Aligned_cols=198 Identities=25% Similarity=0.467 Sum_probs=132.4
Q ss_pred eCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEe-cCC
Q 006913 46 EDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFY-GTG 121 (626)
Q Consensus 46 ~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~-~~~ 121 (626)
.+|.+|+++ ++.|+++|. +|+.+|++..+. .....|.. .++.+|+++ ++.|+++|..++. ..|.. ...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~--~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~-----~~W~~~~~~ 106 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG--PISGAPVV-DGGRVYVGTSDGSLYALDAKTGK-----VLWSIYLTS 106 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSS--CGGSGEEE-ETTEEEEEETTSEEEEEETTTSC-----EEEEEEE-S
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc--cccceeee-cccccccccceeeeEecccCCcc-----eeeeecccc
Confidence 789999996 778999998 999999998743 23334544 568899998 6789999988876 35552 211
Q ss_pred CCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCC-CCCccccceEEEcCCCeE
Q 006913 122 SGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTD-VDCYFTSVPVIDQCEGSI 199 (626)
Q Consensus 122 ~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l-~~~~i~sspviD~~dG~L 199 (626)
. ... .......+...++.++++..++.|+++|+ +|+++|.+.. ..... .... ........++++ ++.|
T Consensus 107 ~-~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-----~~~~~-~~~~~~~~~~~~~~~~~--~~~v 176 (238)
T PF13360_consen 107 S-PPA-GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV-----GEPRG-SSPISSFSDINGSPVIS--DGRV 176 (238)
T ss_dssp S-CTC-STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES-----STT-S-S--EEEETTEEEEEECC--TTEE
T ss_pred c-ccc-ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec-----CCCCC-CcceeeecccccceEEE--CCEE
Confidence 1 000 11112223334788999988899999997 5999998611 10000 0000 000112345555 5699
Q ss_pred EEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEE
Q 006913 200 YISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHK 265 (626)
Q Consensus 200 wIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~ 265 (626)
|+++.++.++++|..+++..|..+... ........++.||+++ ..+.++++|++||++.|++
T Consensus 177 ~~~~~~g~~~~~d~~tg~~~w~~~~~~---~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~~W~~ 238 (238)
T PF13360_consen 177 YVSSGDGRVVAVDLATGEKLWSKPISG---IYSLPSVDGGTLYVTS-SDGRLYALDLKTGKVVWQQ 238 (238)
T ss_dssp EEECCTSSEEEEETTTTEEEEEECSS----ECECEECCCTEEEEEE-TTTEEEEEETTTTEEEEEE
T ss_pred EEEcCCCeEEEEECCCCCEEEEecCCC---ccCCceeeCCEEEEEe-CCCEEEEEECCCCCEEeEC
Confidence 999988878889999999889554222 2232334578999998 5689999999999999963
No 14
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=99.18 E-value=8.9e-09 Score=116.50 Aligned_cols=223 Identities=17% Similarity=0.263 Sum_probs=143.4
Q ss_pred CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCC----CCCeeEEEEEEc
Q 006913 64 NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGG----TGAIAGIAVSTS 138 (626)
Q Consensus 64 ~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~----~~~~I~s~~~d~ 138 (626)
+.++.|.+..+......++|++. +|.||+++ .+.|+++|..+++ ..|.+........ ....+...+...
T Consensus 46 ~L~~~W~~~~g~~~g~~stPvv~-~g~vyv~s~~g~v~AlDa~TGk-----~lW~~~~~~~~~~~~~~~~~~~~rg~av~ 119 (527)
T TIGR03075 46 KLQPAWTFSLGKLRGQESQPLVV-DGVMYVTTSYSRVYALDAKTGK-----ELWKYDPKLPDDVIPVMCCDVVNRGVALY 119 (527)
T ss_pred cceEEEEEECCCCCCcccCCEEE-CCEEEEECCCCcEEEEECCCCc-----eeeEecCCCCcccccccccccccccceEE
Confidence 35678988775321245678874 68999987 7889999999986 3565543211000 000111112345
Q ss_pred CCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC------CCeEEEE
Q 006913 139 SSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT------QGELYSL 211 (626)
Q Consensus 139 dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~------~GgL~~l 211 (626)
+++||+++.++.|+++|. +|+++|.... ... .. ...+.++|++. ++.|+++.. +|.|+++
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~--~~~------~~---~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~Al 186 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKN--GDY------KA---GYTITAAPLVV--KGKVITGISGGEFGVRGYVTAY 186 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeccc--ccc------cc---cccccCCcEEE--CCEEEEeecccccCCCcEEEEE
Confidence 789999999999999998 5999998521 000 00 11234668887 789999864 5789999
Q ss_pred eCCCCeEEEEEcCCC-C------------------------------Ccceeeeeec-CCeEEEEEcC------------
Q 006913 212 SAHSPYFNWIQDLSS-F------------------------------DKAFTLTPGN-NGYLYVTIPV------------ 247 (626)
Q Consensus 212 d~~tg~~~w~~~~~s-~------------------------------~~v~sI~~D~-dG~LwVGT~~------------ 247 (626)
|.++|+..|..+... . ..-..+..|. .|.||+++..
T Consensus 187 D~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gd 266 (527)
T TIGR03075 187 DAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGD 266 (527)
T ss_pred ECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCC
Confidence 999999999854311 0 0001235563 6789999822
Q ss_pred ---CCEEEEEECCCCcEEEEEecCCCC----Cc-eeeEEEe--eCCe----EEEEEcCCeEEEEcCC-CCEEE
Q 006913 248 ---RALVLALDTSSGNILWHKSVGPLG----SA-EYAPVVD--SNGW----ISVGSLDGLLYSFSPS-GVLNK 305 (626)
Q Consensus 248 ---gG~l~alD~~tG~~~w~~~~~~l~----~~-~sspvvD--~dG~----IWVGT~~gGLy~~d~~-g~~~~ 305 (626)
...++++|.+||++.|+++..+.. .. ...+++| .+|. |-.++.+|-+|.+|+. |+.++
T Consensus 267 nl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 267 NLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred CccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 126899999999999998654311 01 1112333 3554 5578889999999985 87764
No 15
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=99.07 E-value=3.5e-08 Score=115.37 Aligned_cols=221 Identities=19% Similarity=0.254 Sum_probs=137.5
Q ss_pred ceeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCc------------c------------cCeEEecCCe
Q 006913 37 FRLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNI------------G------------TAPVHGGTGE 90 (626)
Q Consensus 37 ~~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i------------~------------~sp~iD~dG~ 90 (626)
...++|++ .+|.||+|+ .+.++++|. +|+.+|++........ . .+|.. .+++
T Consensus 185 ~~e~TPlv-vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~-~~~r 262 (764)
T TIGR03074 185 TFQATPLK-VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPAD-CARR 262 (764)
T ss_pred ccccCCEE-ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccc-cCCE
Confidence 45788999 789999998 578999998 9999999876421000 0 01112 3468
Q ss_pred EEEEE-CCeEEEEECCCCccccceeEEEecCCC---CCCC-----CC-CeeEEEEEEcCCeEEEEEc----------CCe
Q 006913 91 VYIVA-ENRVLKVDLLKIGTSESATQVFYGTGS---GKGG-----TG-AIAGIAVSTSSSSVYINVK----------GRA 150 (626)
Q Consensus 91 IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~---~~~~-----~~-~~I~s~~~d~dG~LwIgT~----------~gG 150 (626)
||+++ ++.|+++|..+++. .|.++... +... .+ -.+.+.+...++.|++|.. .+-
T Consensus 263 V~~~T~Dg~LiALDA~TGk~-----~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 263 IILPTSDARLIALDADTGKL-----CEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred EEEecCCCeEEEEECCCCCE-----EEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 99998 89999999999863 45443211 1100 00 1123445556889999853 356
Q ss_pred EEEEeC-CCcEEEEECCcccccc--cccccccCCCCCccccceEEEcCCCeEEEEcC------------------CCeEE
Q 006913 151 LFAFMT-HGQLLWSAGPVLDQLG--YRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT------------------QGELY 209 (626)
Q Consensus 151 L~a~d~-~G~~~w~~~~~~~~~~--~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~------------------~GgL~ 209 (626)
|.+||. +|+++|.+...-.... ...+..-.....+....+.+|...|.+|+++. .+.|+
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 899997 5999998632100000 00000000011222345677765678888663 35789
Q ss_pred EEeCCCCeEEEEEcCCC-----CCcc-eeeeee---cCC----eEEEEEcCCCEEEEEECCCCcEEEEE
Q 006913 210 SLSAHSPYFNWIQDLSS-----FDKA-FTLTPG---NNG----YLYVTIPVRALVLALDTSSGNILWHK 265 (626)
Q Consensus 210 ~ld~~tg~~~w~~~~~s-----~~~v-~sI~~D---~dG----~LwVGT~~gG~l~alD~~tG~~~w~~ 265 (626)
++|.+||+++|.+.... .+.. ..+..| .+| .+++++ .+|.++++|++||+.+|..
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT-KQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEEC-CCCEEEEEECCCCCEEeec
Confidence 99999999999875421 1111 111222 266 577777 5689999999999999964
No 16
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.07 E-value=2.1e-08 Score=100.32 Aligned_cols=206 Identities=19% Similarity=0.223 Sum_probs=137.2
Q ss_pred EEEEeCCCCCCcccCeEE---ecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEE
Q 006913 68 AWSLDLDFTCNIGTAPVH---GGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVY 143 (626)
Q Consensus 68 ~W~~~~~~~~~i~~sp~i---D~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~Lw 143 (626)
+|..++.. -+..+|++ |..-.+++|+ .+.+.++|+.+++. .|.. ..+..+.......++.+.
T Consensus 2 rW~vd~~k--CVDaspLVV~~dskT~v~igSHs~~~~avd~~sG~~-----~We~-------ilg~RiE~sa~vvgdfVV 67 (354)
T KOG4649|consen 2 RWAVDLRK--CVDASPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNL-----IWEA-------ILGVRIECSAIVVGDFVV 67 (354)
T ss_pred ceeccchh--hccCCcEEEecCCceEEEEecCCceEEEecCCCCcE-----Eeeh-------hhCceeeeeeEEECCEEE
Confidence 46555432 12334432 3345688888 78899999999853 4432 123344444455677899
Q ss_pred EEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEE
Q 006913 144 INVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQ 222 (626)
Q Consensus 144 IgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~ 222 (626)
+|-+.++||.++- +|...|.+.. + ..+...+..|...|-||+|+.++.+|++|+++..-.|..
T Consensus 68 ~GCy~g~lYfl~~~tGs~~w~f~~----------~------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 68 LGCYSGGLYFLCVKTGSQIWNFVI----------L------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred EEEccCcEEEEEecchhheeeeee----------h------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 9999999999996 5988897511 0 012234556654788999999999999999998888875
Q ss_pred cCCCCC-cceeeeeecCCeEEEEEcCCCEEEEEECCCC--cEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcC
Q 006913 223 DLSSFD-KAFTLTPGNNGYLYVTIPVRALVLALDTSSG--NILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSP 299 (626)
Q Consensus 223 ~~~s~~-~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG--~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~ 299 (626)
.-++.. ..+.+.+ .++.||+++. +|.+.++.++++ +.+|..... +.++.+|..- .-.+-++|-+|-|.+|++
T Consensus 132 kcgG~~f~sP~i~~-g~~sly~a~t-~G~vlavt~~~~~~~~~w~~~~~--~PiF~splcv-~~sv~i~~VdG~l~~f~~ 206 (354)
T KOG4649|consen 132 KCGGGTFVSPVIAP-GDGSLYAAIT-AGAVLAVTKNPYSSTEFWAATRF--GPIFASPLCV-GSSVIITTVDGVLTSFDE 206 (354)
T ss_pred ccCCceeccceecC-CCceEEEEec-cceEEEEccCCCCcceehhhhcC--CccccCceec-cceEEEEEeccEEEEEcC
Confidence 443311 1223333 2889999985 578999988887 567754333 2245555433 346778888999999999
Q ss_pred CCCEEEEee
Q 006913 300 SGVLNKFSK 308 (626)
Q Consensus 300 ~g~~~~~~~ 308 (626)
.|+..|.+.
T Consensus 207 sG~qvwr~~ 215 (354)
T KOG4649|consen 207 SGRQVWRPA 215 (354)
T ss_pred CCcEEEeec
Confidence 899888554
No 17
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=98.97 E-value=2.5e-07 Score=108.34 Aligned_cols=234 Identities=16% Similarity=0.227 Sum_probs=143.7
Q ss_pred CCEEEEEeCCCC--------CCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCC-----CCCe
Q 006913 65 GTIAWSLDLDFT--------CNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGG-----TGAI 130 (626)
Q Consensus 65 G~~~W~~~~~~~--------~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 130 (626)
-+..|.+..+.. .....+|++ .+|.||+++ .+.|+++|..+++ ..|.+........ ...-
T Consensus 164 L~~aWt~~tGd~~~~~~~~~~~~e~TPlv-vgg~lYv~t~~~~V~ALDa~TGk-----~lW~~d~~~~~~~~~~~~~cRG 237 (764)
T TIGR03074 164 LKVAWTYHTGDLKTPDDPGEATFQATPLK-VGDTLYLCTPHNKVIALDAATGK-----EKWKFDPKLKTEAGRQHQTCRG 237 (764)
T ss_pred ceEEEEEECCCccccccccccccccCCEE-ECCEEEEECCCCeEEEEECCCCc-----EEEEEcCCCCcccccccccccc
Confidence 467799876421 113456777 468999998 7899999999986 4666554321100 0000
Q ss_pred eEE--------------EEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCC-CCCccccceEEEc
Q 006913 131 AGI--------------AVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTD-VDCYFTSVPVIDQ 194 (626)
Q Consensus 131 I~s--------------~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l-~~~~i~sspviD~ 194 (626)
+.. .+...+++||+++.++.|+++|. +|+.+|.++..- ......+..... ....+.++|++.
T Consensus 238 vay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~- 315 (764)
T TIGR03074 238 VSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVA- 315 (764)
T ss_pred eEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEE-
Confidence 000 01124569999999999999997 499999862200 000000000000 011234678887
Q ss_pred CCCeEEEEcC----------CCeEEEEeCCCCeEEEEEcCCC--------C--------Ccc-eeeeee-cCCeEEEEEc
Q 006913 195 CEGSIYISNT----------QGELYSLSAHSPYFNWIQDLSS--------F--------DKA-FTLTPG-NNGYLYVTIP 246 (626)
Q Consensus 195 ~dG~LwIGT~----------~GgL~~ld~~tg~~~w~~~~~s--------~--------~~v-~sI~~D-~dG~LwVGT~ 246 (626)
++.|++|.. .|.|++||.++|++.|..+... . ..+ ..+..| ..|.+|+++.
T Consensus 316 -~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptG 394 (764)
T TIGR03074 316 -GTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMG 394 (764)
T ss_pred -CCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCC
Confidence 789999853 5779999999999999865320 0 000 123444 3467888651
Q ss_pred -----------------CCCEEEEEECCCCcEEEEEecCCC---C-CceeeEE-Ee---eCC----eEEEEEcCCeEEEE
Q 006913 247 -----------------VRALVLALDTSSGNILWHKSVGPL---G-SAEYAPV-VD---SNG----WISVGSLDGLLYSF 297 (626)
Q Consensus 247 -----------------~gG~l~alD~~tG~~~w~~~~~~l---~-~~~sspv-vD---~dG----~IWVGT~~gGLy~~ 297 (626)
..+.++++|..||+..|+++..+. . .....|+ +| .+| .|+.++.+|.+|++
T Consensus 395 n~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vl 474 (764)
T TIGR03074 395 NQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVL 474 (764)
T ss_pred CccccccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEE
Confidence 124688999999999998865320 0 1111122 22 156 79999999999999
Q ss_pred cCC-CCEEEEe
Q 006913 298 SPS-GVLNKFS 307 (626)
Q Consensus 298 d~~-g~~~~~~ 307 (626)
|+. |+.+|-.
T Consensus 475 Dr~tG~~l~~~ 485 (764)
T TIGR03074 475 DRRTGEPIVPV 485 (764)
T ss_pred ECCCCCEEeec
Confidence 984 8988853
No 18
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.92 E-value=1.4e-06 Score=88.59 Aligned_cols=221 Identities=14% Similarity=0.183 Sum_probs=132.3
Q ss_pred eeeEEee-CCEEEEEe--CCcEEEEcCCCCEEEEEeCCCCCCcccCeEEe-cCCeEEEEECCeEEEEECCCCccccceeE
Q 006913 40 SKPLIGE-DGKIYACS--EKTLFAFESNGTIAWSLDLDFTCNIGTAPVHG-GTGEVYIVAENRVLKVDLLKIGTSESATQ 115 (626)
Q Consensus 40 Sspvid~-dG~IwIgS--dggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD-~dG~IwVgT~ggL~~id~~~~~~~~~~~~ 115 (626)
-+|+.+. +|.||+.. .+.|++++..+.....+..+. ..+..++ .+|.+|++..+++..+|+.++.. .
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~-----~ 73 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADSGGIAVVDPDTGKV-----T 73 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEETTCEEEEETTTTEE-----E
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEcCceEEEecCCCcE-----E
Confidence 3678875 89998876 567999998444332233332 2344556 67999999888888889887632 2
Q ss_pred EEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC---------CeEEEEeCCCcEEEEECCcccccccccccccCCCCCcc
Q 006913 116 VFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG---------RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYF 186 (626)
Q Consensus 116 ~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~---------gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i 186 (626)
....... .............+.+|+||+++.. +.|++++++++...... .+. .
T Consensus 74 ~~~~~~~-~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~----~~~-------------~ 135 (246)
T PF08450_consen 74 VLADLPD-GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVAD----GLG-------------F 135 (246)
T ss_dssp EEEEEET-TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEE----EES-------------S
T ss_pred EEeeccC-CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEec----Ccc-------------c
Confidence 2221110 0001223445677899999999753 45899998865433220 111 1
Q ss_pred ccceEEEcCCCeEEEEc-CCCeEEEEeCC--CCeEEEE---EcCCC-CCcceeeeeecCCeEEEEEcCCCEEEEEECCCC
Q 006913 187 TSVPVIDQCEGSIYISN-TQGELYSLSAH--SPYFNWI---QDLSS-FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSG 259 (626)
Q Consensus 187 ~sspviD~~dG~LwIGT-~~GgL~~ld~~--tg~~~w~---~~~~s-~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG 259 (626)
..-+++++.+..||+.. ..+.|++++.+ ++.+... .+... ....-.+++|.+|+|||+...++.+..+++. |
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G 214 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G 214 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S
T ss_pred ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c
Confidence 12356665244688764 46779988875 3322211 12222 1124468899999999998778899999975 8
Q ss_pred cEEEEEecCCCCCceeeEEEe--eCCeEEEEEc
Q 006913 260 NILWHKSVGPLGSAEYAPVVD--SNGWISVGSL 290 (626)
Q Consensus 260 ~~~w~~~~~~l~~~~sspvvD--~dG~IWVGT~ 290 (626)
+.+-....+. ...+++++. ..++|||.|.
T Consensus 215 ~~~~~i~~p~--~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 215 KLLREIELPV--PRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp CEEEEEE-SS--SSEEEEEEESTTSSEEEEEEB
T ss_pred cEEEEEcCCC--CCEEEEEEECCCCCEEEEEeC
Confidence 8776655541 234556663 3478998873
No 19
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.92 E-value=3.4e-07 Score=92.62 Aligned_cols=231 Identities=13% Similarity=0.138 Sum_probs=149.0
Q ss_pred EEeeCCEEEEEeC--CcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEe
Q 006913 43 LIGEDGKIYACSE--KTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFY 118 (626)
Q Consensus 43 vid~dG~IwIgSd--ggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~ 118 (626)
..+.||.+|.+.+ +.+=.+|+ +|+.. .++++.. ..-..++++.+|..|+.. ..+|.++++++... ..|..
T Consensus 68 apapdG~VWft~qg~gaiGhLdP~tGev~-~ypLg~G-a~Phgiv~gpdg~~Witd~~~aI~R~dpkt~ev----t~f~l 141 (353)
T COG4257 68 APAPDGAVWFTAQGTGAIGHLDPATGEVE-TYPLGSG-ASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEV----TRFPL 141 (353)
T ss_pred ccCCCCceEEecCccccceecCCCCCceE-EEecCCC-CCCceEEECCCCCeeEecCcceeEEecCcccce----EEeec
Confidence 4456999999874 46889998 88865 3566532 233467788999999986 44899999987532 12222
Q ss_pred cCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEE-EEeCC-CcE-EEEECCcccccccccccccCCCCCccccceEEEcC
Q 006913 119 GTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALF-AFMTH-GQL-LWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC 195 (626)
Q Consensus 119 ~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~-a~d~~-G~~-~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~ 195 (626)
.. ..........+.|..|+||+... .|.+ .+|+. +.+ +|.. .+ ... .+-++...
T Consensus 142 p~----~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpa---------Pq----G~g----pyGi~atp- 198 (353)
T COG4257 142 PL----EHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPA---------PQ----GGG----PYGICATP- 198 (353)
T ss_pred cc----ccCCCcccceeeCCCccEEEeec-cccceecCcccCceeeecc---------CC----CCC----CcceEECC-
Confidence 21 11123455677899999999654 4554 67874 332 2221 11 100 12245554
Q ss_pred CCeEEEEcC-CCeEEEEeCCCCeEEEEEcC-CCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEE-EecCCCCC
Q 006913 196 EGSIYISNT-QGELYSLSAHSPYFNWIQDL-SSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWH-KSVGPLGS 272 (626)
Q Consensus 196 dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~-~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~-~~~~~l~~ 272 (626)
+|.||+... .+.|..+|+.++.-.-.... ........+..|.-|++|+.+...+.++.+|+.+-. |. +.++....
T Consensus 199 dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~a 276 (353)
T COG4257 199 DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKA 276 (353)
T ss_pred CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCC
Confidence 899999865 45688899988754333221 111224556778899999999888899999986543 64 34443222
Q ss_pred ceeeEEEeeCCeEEEEEc-CCeEEEEcCCCCEE
Q 006913 273 AEYAPVVDSNGWISVGSL-DGLLYSFSPSGVLN 304 (626)
Q Consensus 273 ~~sspvvD~dG~IWVGT~-~gGLy~~d~~g~~~ 304 (626)
.-.++.+|..|++|.... .+.|.+||+....+
T Consensus 277 rpys~rVD~~grVW~sea~agai~rfdpeta~f 309 (353)
T COG4257 277 RPYSMRVDRHGRVWLSEADAGAIGRFDPETARF 309 (353)
T ss_pred CcceeeeccCCcEEeeccccCceeecCcccceE
Confidence 345688998999999543 46899999865433
No 20
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.91 E-value=6.1e-07 Score=90.04 Aligned_cols=240 Identities=15% Similarity=0.180 Sum_probs=146.3
Q ss_pred ccccccCCceeeeeEEeeC-CEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEec-CCeEEEEE-CCeEEEEE
Q 006913 29 KVPYRRSAFRLSKPLIGED-GKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGG-TGEVYIVA-ENRVLKVD 103 (626)
Q Consensus 29 ~~~~~~~~~~~Sspvid~d-G~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~-dG~IwVgT-~ggL~~id 103 (626)
-|.+.--+.+.+.|.+|.+ |-||+|+ ++.+|++|. +-.-+|+...+. ....+|+++. ++.||+++ .|.|.+.+
T Consensus 86 ~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG--~~f~sP~i~~g~~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 86 IWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG--GTFVSPVIAPGDGSLYAAITAGAVLAVT 163 (354)
T ss_pred eeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC--ceeccceecCCCceEEEEeccceEEEEc
Confidence 3455667788899999864 6789998 778999998 555677765554 4667888887 89999997 78899999
Q ss_pred CCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCC
Q 006913 104 LLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVD 183 (626)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~ 183 (626)
+++..+ ...|.+.. .+++.+.+ .--...+.+++-++.|.++++.|+++|++.+ .
T Consensus 164 ~~~~~~---~~~w~~~~------~~PiF~sp-lcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t----------------~ 217 (354)
T KOG4649|consen 164 KNPYSS---TEFWAATR------FGPIFASP-LCVGSSVIITTVDGVLTSFDESGRQVWRPAT----------------K 217 (354)
T ss_pred cCCCCc---ceehhhhc------CCccccCc-eeccceEEEEEeccEEEEEcCCCcEEEeecC----------------C
Confidence 887532 11232211 11222222 2223456677888889999988999997521 0
Q ss_pred CccccceEEE-cCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-----------C---------CcceeeeeecCCeEE
Q 006913 184 CYFTSVPVID-QCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS-----------F---------DKAFTLTPGNNGYLY 242 (626)
Q Consensus 184 ~~i~sspviD-~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-----------~---------~~v~sI~~D~dG~Lw 242 (626)
..+...|... +..+.|..+..+ -+++.-+..|.+.|....+. + +.... ....||++|
T Consensus 218 GpIf~~Pc~s~Ps~q~i~~~~~~-Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~-~~s~dgkv~ 295 (354)
T KOG4649|consen 218 GPIFMEPCESRPSCQQISLENEN-CFCAPLPIAGHLLWATQSGTTLHVYLSPKLRFDLHSPGISYPKLLR-RSSGDGKVM 295 (354)
T ss_pred CceecccccCCCcceEEEEecCC-eEEEeccccceEEEEecCCcEEEEEeCcccceeccCCCCcchhhhh-hhcCCCcEE
Confidence 1122233321 113456666544 45555555578888644321 0 00000 112467777
Q ss_pred EEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913 243 VTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS 300 (626)
Q Consensus 243 VGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~ 300 (626)
|-... -.+...+..+|+........-.+.++++|++- +|+|.||..++.|+++|.+
T Consensus 296 il~~~-~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii-~grl~igcRDdYv~cldl~ 351 (354)
T KOG4649|consen 296 ILMTS-KSLAEISSNGGELQNLEAIELSNEIFSSPVII-DGRLLIGCRDDYVRCLDLD 351 (354)
T ss_pred EEEec-ccccccccCCCccceEEEeecCcccccCCeEE-ccEEEEEEccCeEEEEecc
Confidence 76322 23444455556554333222113567888876 6999999999999999864
No 21
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.90 E-value=3.2e-06 Score=85.99 Aligned_cols=219 Identities=18% Similarity=0.228 Sum_probs=129.9
Q ss_pred CeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-
Q 006913 82 APVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH- 157 (626)
Q Consensus 82 sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~- 157 (626)
+|+.|. +|.||+.. .+.|+++++.++.. .. +.. ....+..+...+|.+|++.. +++..+|+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-----~~-~~~-------~~~~G~~~~~~~g~l~v~~~-~~~~~~d~~~ 69 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-----EV-IDL-------PGPNGMAFDRPDGRLYVADS-GGIAVVDPDT 69 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE-----EE-EES-------SSEEEEEEECTTSEEEEEET-TCEEEEETTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-----EE-Eec-------CCCceEEEEccCCEEEEEEc-CceEEEecCC
Confidence 466775 88998886 68899999988631 11 111 11444444447899999875 577778975
Q ss_pred CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCC---------CeEEEEeCCCCeEEEEEcCCCCC
Q 006913 158 GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQ---------GELYSLSAHSPYFNWIQDLSSFD 228 (626)
Q Consensus 158 G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~---------GgL~~ld~~tg~~~w~~~~~s~~ 228 (626)
|+....... ..+. .. .......++|+ +|+||+++.. |.|++++++ ++...... ...
T Consensus 70 g~~~~~~~~-------~~~~-~~---~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~ 134 (246)
T PF08450_consen 70 GKVTVLADL-------PDGG-VP---FNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLG 134 (246)
T ss_dssp TEEEEEEEE-------ETTC-SC---TEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EES
T ss_pred CcEEEEeec-------cCCC-cc---cCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccc
Confidence 654332210 0000 00 01123467886 9999998752 679999998 56543322 122
Q ss_pred cceeeeeecCC-eEEEEEcCCCEEEEEECC--CCcEEEE---EecCCCCCceeeEEEeeCCeEEEEEc-CCeEEEEcCCC
Q 006913 229 KAFTLTPGNNG-YLYVTIPVRALVLALDTS--SGNILWH---KSVGPLGSAEYAPVVDSNGWISVGSL-DGLLYSFSPSG 301 (626)
Q Consensus 229 ~v~sI~~D~dG-~LwVGT~~gG~l~alD~~--tG~~~w~---~~~~~l~~~~sspvvD~dG~IWVGT~-~gGLy~~d~~g 301 (626)
....|+.+.|| .||+.....+.++.++.. ++.+... ..........-.+++|.+|+||++.. .+.|++++++|
T Consensus 135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG 214 (246)
T ss_dssp SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred cccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence 34467777777 588887667788888764 3322211 12221111345688999999999975 67999999999
Q ss_pred CEEEEeeccCCCCccccCceEEEEEE--ecCCcEEEEE
Q 006913 302 VLNKFSKSDTSDSVIQSSPYWFHLLG--PSIGLKAILC 337 (626)
Q Consensus 302 ~~~~~~~~~~~~~~ilssp~V~~Il~--DsdG~IwI~T 337 (626)
++...... +.+.+.++.. +..+.|||-|
T Consensus 215 ~~~~~i~~--------p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 215 KLLREIEL--------PVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp CEEEEEE---------SSSSEEEEEEESTTSSEEEEEE
T ss_pred cEEEEEcC--------CCCCEEEEEEECCCCCEEEEEe
Confidence 87765541 2122333433 2457787644
No 22
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.80 E-value=6.6e-07 Score=90.54 Aligned_cols=230 Identities=14% Similarity=0.109 Sum_probs=141.8
Q ss_pred EEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-Cc-
Q 006913 84 VHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQ- 159 (626)
Q Consensus 84 ~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~- 159 (626)
..+.||.+|... .+-+=.+|+.++.- ..+-++. +..-..++...+|..||.....+|.++|++ .+
T Consensus 68 apapdG~VWft~qg~gaiGhLdP~tGev----~~ypLg~-------Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~ev 136 (353)
T COG4257 68 APAPDGAVWFTAQGTGAIGHLDPATGEV----ETYPLGS-------GASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEV 136 (353)
T ss_pred ccCCCCceEEecCccccceecCCCCCce----EEEecCC-------CCCCceEEECCCCCeeEecCcceeEEecCcccce
Confidence 346789999987 35677889998741 2222222 222234567899999998766689999984 43
Q ss_pred EEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC
Q 006913 160 LLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG 239 (626)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG 239 (626)
..|.. + ....+.++ .+++.|. .|+||+....|---+||+..+.+.-+. .+.....+.|+...||
T Consensus 137 t~f~l-------p------~~~a~~nl-et~vfD~-~G~lWFt~q~G~yGrLdPa~~~i~vfp-aPqG~gpyGi~atpdG 200 (353)
T COG4257 137 TRFPL-------P------LEHADANL-ETAVFDP-WGNLWFTGQIGAYGRLDPARNVISVFP-APQGGGPYGICATPDG 200 (353)
T ss_pred EEeec-------c------cccCCCcc-cceeeCC-CccEEEeeccccceecCcccCceeeec-cCCCCCCcceEECCCC
Confidence 33432 1 01112233 4578886 999999766554448899887665432 1111123456777899
Q ss_pred eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcC-CeEEEEcCCCCEEEEeeccCCCCcccc
Q 006913 240 YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLD-GLLYSFSPSGVLNKFSKSDTSDSVIQS 318 (626)
Q Consensus 240 ~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~-gGLy~~d~~g~~~~~~~~~~~~~~ils 318 (626)
.+|+++..+..+..+|+.++...-....+.+..-...+-.|+.|++|+.|.+ +.|++||+.... |..-..+. +
T Consensus 201 svwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPg-----s 274 (353)
T COG4257 201 SVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPG-----S 274 (353)
T ss_pred cEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCC-----C
Confidence 9999987777888899988854322111111111233556888999999875 579999997544 43221111 2
Q ss_pred CceEEEEEEecCCcEEEEEeeecCeeEEe
Q 006913 319 SPYWFHLLGPSIGLKAILCLMVVGQFSSL 347 (626)
Q Consensus 319 sp~V~~Il~DsdG~IwI~T~t~~Ggl~~~ 347 (626)
.+.-+++.+|..|+||+.- -..|.|..+
T Consensus 275 ~arpys~rVD~~grVW~se-a~agai~rf 302 (353)
T COG4257 275 KARPYSMRVDRHGRVWLSE-ADAGAIGRF 302 (353)
T ss_pred CCCcceeeeccCCcEEeec-cccCceeec
Confidence 2333578999999999532 223444443
No 23
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.003 Score=66.97 Aligned_cols=197 Identities=20% Similarity=0.240 Sum_probs=109.1
Q ss_pred cCeEEecC-CeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC
Q 006913 81 TAPVHGGT-GEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH 157 (626)
Q Consensus 81 ~sp~iD~d-G~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~ 157 (626)
-+|+.+.+ +.||... .+.|+++++.++.. ..+..+ ...-.....+.++.|+... .|++.++.+
T Consensus 28 EgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~----~~~~~p--------~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~ 93 (307)
T COG3386 28 EGPVWDPDRGALLWVDILGGRIHRLDPETGKK----RVFPSP--------GGFSSGALIDAGGRLIACE--HGVRLLDPD 93 (307)
T ss_pred cCccCcCCCCEEEEEeCCCCeEEEecCCcCce----EEEECC--------CCcccceeecCCCeEEEEc--cccEEEecc
Confidence 34555554 4466654 78999999986631 122211 1122334556777777653 567777753
Q ss_pred -CcE-EEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCC------------CeEEEEeCCCCeEEEEEc
Q 006913 158 -GQL-LWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQ------------GELYSLSAHSPYFNWIQD 223 (626)
Q Consensus 158 -G~~-~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~------------GgL~~ld~~tg~~~w~~~ 223 (626)
+.. .-.... ..+.+.+ ......+++ +|.+|+|+.. |.||++++.++...-..+
T Consensus 94 ~~~~~t~~~~~-------~~~~~~~-----r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~ 160 (307)
T COG3386 94 TGGKITLLAEP-------EDGLPLN-----RPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD 160 (307)
T ss_pred CCceeEEeccc-------cCCCCcC-----CCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC
Confidence 443 111111 0000111 112356776 8999999866 348999986543332211
Q ss_pred CCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECC--CCcEE----EE-EecCCCCCceeeEEEeeCCeEEEEEcCC--e
Q 006913 224 LSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTS--SGNIL----WH-KSVGPLGSAEYAPVVDSNGWISVGSLDG--L 293 (626)
Q Consensus 224 ~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~--tG~~~----w~-~~~~~l~~~~sspvvD~dG~IWVGT~~g--G 293 (626)
.......++.+.|| ++|++......+++++.. ++.+- .. ....+ ...-.+++|.+|+||+....+ +
T Consensus 161 --~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~--G~PDG~~vDadG~lw~~a~~~g~~ 236 (307)
T COG3386 161 --DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEP--GLPDGMAVDADGNLWVAAVWGGGR 236 (307)
T ss_pred --cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCC--CCCCceEEeCCCCEEEecccCCce
Confidence 01112345666677 899987655677777542 23221 11 11111 112347889999999655443 8
Q ss_pred EEEEcCCCCEEEEee
Q 006913 294 LYSFSPSGVLNKFSK 308 (626)
Q Consensus 294 Ly~~d~~g~~~~~~~ 308 (626)
|.+|+++|+......
T Consensus 237 v~~~~pdG~l~~~i~ 251 (307)
T COG3386 237 VVRFNPDGKLLGEIK 251 (307)
T ss_pred EEEECCCCcEEEEEE
Confidence 999999988776554
No 24
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.92 E-value=0.024 Score=69.74 Aligned_cols=252 Identities=13% Similarity=0.184 Sum_probs=138.2
Q ss_pred eeEEee-CCEEEEEe--CCcEEEEcCCCCEEEEEeC-CCC-----------CCcccCeEEecCCe-EEEEE--CCeEEEE
Q 006913 41 KPLIGE-DGKIYACS--EKTLFAFESNGTIAWSLDL-DFT-----------CNIGTAPVHGGTGE-VYIVA--ENRVLKV 102 (626)
Q Consensus 41 spvid~-dG~IwIgS--dggL~a~d~~G~~~W~~~~-~~~-----------~~i~~sp~iD~dG~-IwVgT--~ggL~~i 102 (626)
..++|. +|+|||+. .+.+..+|.+|...-.... +.. ...-..+.+|.+++ |||+. ++.|..+
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 346764 58899985 4578999988876432221 100 01123566776655 88875 4678889
Q ss_pred ECCCCccccceeEEEecCCC----CCCC-------CCCeeEEEEEEc-CCeEEEEEc-CCeEEEEeCC-CcEEEEECCcc
Q 006913 103 DLLKIGTSESATQVFYGTGS----GKGG-------TGAIAGIAVSTS-SSSVYINVK-GRALFAFMTH-GQLLWSAGPVL 168 (626)
Q Consensus 103 d~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~I~s~~~d~-dG~LwIgT~-~gGL~a~d~~-G~~~w~~~~~~ 168 (626)
|..++. +....+... .... ...... +..+. ++.|||+.. ++.|..+|.. |...-..+..
T Consensus 652 d~~~~~-----V~tlag~G~~g~~~~gg~~~~~~~ln~P~g-Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G- 724 (1057)
T PLN02919 652 DFVNET-----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWD-VCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDG- 724 (1057)
T ss_pred ecCCCE-----EEEEeccCcccCCCCCChhhhHhhcCCCeE-EEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCC-
Confidence 987652 111111100 0000 011122 23344 789999854 4678888875 5432211100
Q ss_pred cccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcC-----------C---C------C
Q 006913 169 DQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDL-----------S---S------F 227 (626)
Q Consensus 169 ~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~-----------~---s------~ 227 (626)
.. ....+.............+++++.++.|||+.. ++.|.++|.+++...+.... + + .
T Consensus 725 ~~-~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 725 YE-RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred cc-ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 00 000000000000000123556652345999866 57899999987765443210 0 0 1
Q ss_pred CcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCC-----------CCceeeEEEeeCCeEEEEEc-CCeEE
Q 006913 228 DKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPL-----------GSAEYAPVVDSNGWISVGSL-DGLLY 295 (626)
Q Consensus 228 ~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l-----------~~~~sspvvD~dG~IWVGT~-~gGLy 295 (626)
.....++.+.+|+|||+...++.+..+|+.++.+......+.. -.....++++++|++||+.. ++.|.
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 1234677889999999987778999999888776543221100 01234567888999999864 56777
Q ss_pred EEcCC
Q 006913 296 SFSPS 300 (626)
Q Consensus 296 ~~d~~ 300 (626)
.+|..
T Consensus 884 vid~~ 888 (1057)
T PLN02919 884 YLDLN 888 (1057)
T ss_pred EEECC
Confidence 88875
No 25
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.89 E-value=0.00064 Score=75.82 Aligned_cols=178 Identities=15% Similarity=0.238 Sum_probs=102.1
Q ss_pred EEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccc-cccCCCCCccccceEE--EcCCCeEEEEcCCCeEE
Q 006913 134 AVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQG-CTKTDVDCYFTSVPVI--DQCEGSIYISNTQGELY 209 (626)
Q Consensus 134 ~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~-~~~~l~~~~i~sspvi--D~~dG~LwIGT~~GgL~ 209 (626)
.++..++.||++|..+-++++|.. |+.+|++++.+....-... |+...+ ....... ..|..+|++.+.+..|.
T Consensus 209 tPLkvgdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVs---y~~a~a~~k~pc~~rIflpt~DarlI 285 (773)
T COG4993 209 TPLKVGDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVS---YGAAKADAKSPCPRRIFLPTADARLI 285 (773)
T ss_pred cceEECCEEEEecCcceeEEeeccCCceeeecCCCCCCCccccccccccee---cccccccccCCCceeEEeecCCceEE
Confidence 345578999999998999999974 9999998553321110110 111111 0011111 22567799999999999
Q ss_pred EEeCCCCeEEEEEcCCC-CCcceee--------------eeecCCeEEEEEc--------CCCEEEEEECCCCcEEEEEe
Q 006913 210 SLSAHSPYFNWIQDLSS-FDKAFTL--------------TPGNNGYLYVTIP--------VRALVLALDTSSGNILWHKS 266 (626)
Q Consensus 210 ~ld~~tg~~~w~~~~~s-~~~v~sI--------------~~D~dG~LwVGT~--------~gG~l~alD~~tG~~~w~~~ 266 (626)
++|.++|++.|.....+ .+-...+ .....+.|.-+.. ..+.+-.+|..+|+..|...
T Consensus 286 ALdA~tGkvc~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~~D 365 (773)
T COG4993 286 ALDADTGKVCWSFANKGALNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEPSGVIRGFDVLTGKLTWAGD 365 (773)
T ss_pred EEeCCCCcEeheeccCceeeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeeccCccccccccccCceEEccC
Confidence 99999999999743221 0000000 0011111221110 12345567777888888643
Q ss_pred cCC------C--C--------CceeeEEEeeC-CeEEEEEc------------------CCeEEEEcCC-CCEEEEeecc
Q 006913 267 VGP------L--G--------SAEYAPVVDSN-GWISVGSL------------------DGLLYSFSPS-GVLNKFSKSD 310 (626)
Q Consensus 267 ~~~------l--~--------~~~sspvvD~d-G~IWVGT~------------------~gGLy~~d~~-g~~~~~~~~~ 310 (626)
.+. . + +...+...|.+ |.||++.. ..++.++|.+ |+.+|.++..
T Consensus 366 ~gnpD~t~p~~~g~tyt~nspn~W~~~SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssivAlD~~TG~~kW~yQtv 445 (773)
T COG4993 366 PGNPDPTAPTAPGQTYTRNSPNSWASASYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSIVALDATTGKLKWVYQTV 445 (773)
T ss_pred CCCCCCCCCCCCCceeecCCCCcccccccCCCCCeEEEeCCCCChhhccCCCCcccccccceeEEecCCCcceeeeeecc
Confidence 221 0 0 12334455533 77888752 3578999985 9999988765
Q ss_pred CCCC
Q 006913 311 TSDS 314 (626)
Q Consensus 311 ~~~~ 314 (626)
+.+-
T Consensus 446 hhDl 449 (773)
T COG4993 446 HHDL 449 (773)
T ss_pred Ccch
Confidence 5543
No 26
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.0085 Score=63.51 Aligned_cols=229 Identities=11% Similarity=0.114 Sum_probs=121.3
Q ss_pred ccCCceeeeeEEeeCC-EEEEEe--CCcEEEEcC-CCCEE-EEEeCCCCCCcccCeEEecCCeEEEEECCeEEEEECCCC
Q 006913 33 RRSAFRLSKPLIGEDG-KIYACS--EKTLFAFES-NGTIA-WSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKI 107 (626)
Q Consensus 33 ~~~~~~~Sspvid~dG-~IwIgS--dggL~a~d~-~G~~~-W~~~~~~~~~i~~sp~iD~dG~IwVgT~ggL~~id~~~~ 107 (626)
......--+|+-+.+. .||.+. .+.++++++ +|... |.. +. ...+...+|..|.|+ +.+.|++.++++.+
T Consensus 21 ~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~--p~--~~~~~~~~d~~g~Lv-~~~~g~~~~~~~~~ 95 (307)
T COG3386 21 DKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS--PG--GFSSGALIDAGGRLI-ACEHGVRLLDPDTG 95 (307)
T ss_pred ecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC--CC--CcccceeecCCCeEE-EEccccEEEeccCC
Confidence 3445566677776544 465554 567999998 67543 332 22 233344556666555 45677777776544
Q ss_pred ccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC------------CeEEEEeCCCcEEEEECCccccccccc
Q 006913 108 GTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG------------RALFAFMTHGQLLWSAGPVLDQLGYRQ 175 (626)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~------------gGL~a~d~~G~~~w~~~~~~~~~~~~~ 175 (626)
.. .......... ......+-...+.+|.+|+++.. +.||++++.|...-.... .+
T Consensus 96 ~~----~t~~~~~~~~--~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~---~~---- 162 (307)
T COG3386 96 GK----ITLLAEPEDG--LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD---DL---- 162 (307)
T ss_pred ce----eEEeccccCC--CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC---cE----
Confidence 21 0111111111 11112233456789999999875 238888876544322100 00
Q ss_pred ccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCC--CeE----EEEEcCCCCCcceeeeeecCCeEEEEE-cC
Q 006913 176 GCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHS--PYF----NWIQDLSSFDKAFTLTPGNNGYLYVTI-PV 247 (626)
Q Consensus 176 ~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~t--g~~----~w~~~~~s~~~v~sI~~D~dG~LwVGT-~~ 247 (626)
.+...++....+..+|+... .+.|++++.+. +.. .+..........=.+++|.+|+||++. .+
T Consensus 163 ---------~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~ 233 (307)
T COG3386 163 ---------TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG 233 (307)
T ss_pred ---------EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence 01223455542447888755 46788776642 111 111110011112246889999999544 33
Q ss_pred CCEEEEEECCCCcEEEEEecCCCCCceeeEEEee--CCeEEEEEcC
Q 006913 248 RALVLALDTSSGNILWHKSVGPLGSAEYAPVVDS--NGWISVGSLD 291 (626)
Q Consensus 248 gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~--dG~IWVGT~~ 291 (626)
++.+.++++. |+.+-....+. ...++++... -+.|||.+..
T Consensus 234 g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 234 GGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CceEEEECCC-CcEEEEEECCC--CCCccceEeCCCcCEEEEEecC
Confidence 3489999976 88776665551 1234455432 3678887643
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.82 E-value=0.039 Score=54.12 Aligned_cols=254 Identities=10% Similarity=0.056 Sum_probs=134.3
Q ss_pred eeeeEEeeCC-EEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCC-eEEEEE-CCeEEEEECCCCccccce
Q 006913 39 LSKPLIGEDG-KIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTG-EVYIVA-ENRVLKVDLLKIGTSESA 113 (626)
Q Consensus 39 ~Sspvid~dG-~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG-~IwVgT-~ggL~~id~~~~~~~~~~ 113 (626)
.+.+....++ .|.+++ ++.+..++. ++.......... .....+....++ .+++++ ++.+..++..++..
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~---- 85 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT--GPVRDVAASADGTYLASGSSDKTIRLWDLETGEC---- 85 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCC--cceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc----
Confidence 3444444554 445555 667778876 554433332211 112233444555 566666 78888888876421
Q ss_pred eEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceE
Q 006913 114 TQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPV 191 (626)
Q Consensus 114 ~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspv 191 (626)
...+.. . ...+..+....++.+.++.. ++.+..++.. ++....... . ... ...+.
T Consensus 86 -~~~~~~-----~-~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------~---~~~-i~~~~ 142 (289)
T cd00200 86 -VRTLTG-----H-TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG------------H---TDW-VNSVA 142 (289)
T ss_pred -eEEEec-----c-CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc------------C---CCc-EEEEE
Confidence 111111 1 11333344444456665554 7788889975 655443310 0 011 13344
Q ss_pred EEcCCCeEE-EEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCC
Q 006913 192 IDQCEGSIY-ISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGP 269 (626)
Q Consensus 192 iD~~dG~Lw-IGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~ 269 (626)
..+ ++.+. .++.++.|..+|.++++........ ...+.++....++ .+++++. .+.+..+|..++.........
T Consensus 143 ~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~- 218 (289)
T cd00200 143 FSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRGH- 218 (289)
T ss_pred EcC-cCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECCCcCEEEEecC-CCcEEEEECCCCceecchhhc-
Confidence 443 34444 4444888999998876554332211 1234555666666 6777764 578888887777665433111
Q ss_pred CCCceeeEEEeeCCeEEEEEc-CCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEE
Q 006913 270 LGSAEYAPVVDSNGWISVGSL-DGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKA 334 (626)
Q Consensus 270 l~~~~sspvvD~dG~IWVGT~-~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~Iw 334 (626)
...+..+..++++.+.++.. ++.|+.++.. ++...... .....+..+....+|...
T Consensus 219 -~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l 276 (289)
T cd00200 219 -ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--------GHTNSVTSLAWSPDGKRL 276 (289)
T ss_pred -CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--------ccCCcEEEEEECCCCCEE
Confidence 11344566666677777665 8889999865 44333222 012234555556665554
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.68 E-value=0.066 Score=52.51 Aligned_cols=223 Identities=10% Similarity=0.067 Sum_probs=119.3
Q ss_pred EEeeCC-EEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEE
Q 006913 43 LIGEDG-KIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVF 117 (626)
Q Consensus 43 vid~dG-~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~ 117 (626)
....++ .|++++ ++.+..++. +++....+.... ..+.++....++.+.+++ ++.+..++..+.. ....
T Consensus 58 ~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~ 130 (289)
T cd00200 58 AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT--SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-----CLTT 130 (289)
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccC--CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-----EEEE
Confidence 333444 566666 667888887 444443332211 123344455556666554 6888888887542 1111
Q ss_pred ecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcC
Q 006913 118 YGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC 195 (626)
Q Consensus 118 ~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~ 195 (626)
+. .. ...+..+....++.+.++.. ++.+..+|.. ++....+.. . ... ...+...+.
T Consensus 131 ~~-----~~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~------------~---~~~-i~~~~~~~~ 188 (289)
T cd00200 131 LR-----GH-TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG------------H---TGE-VNSVAFSPD 188 (289)
T ss_pred ec-----cC-CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec------------C---ccc-cceEEECCC
Confidence 11 01 12334444444455555444 7778888875 554433200 0 001 123444431
Q ss_pred CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCcee
Q 006913 196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEY 275 (626)
Q Consensus 196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~s 275 (626)
+..+++++.++.+..+|.++++...... .....+.++....++.++++....+.+..+|..++......... ...+.
T Consensus 189 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~ 265 (289)
T cd00200 189 GEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVT 265 (289)
T ss_pred cCEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEE
Confidence 3378888888889999998765543321 11123455666666777776643578888887777665443321 12244
Q ss_pred eEEEeeC-CeEEEEEcCCeEEEE
Q 006913 276 APVVDSN-GWISVGSLDGLLYSF 297 (626)
Q Consensus 276 spvvD~d-G~IWVGT~~gGLy~~ 297 (626)
.+..+++ ..+++++.++.+..+
T Consensus 266 ~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 266 SLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred EEEECCCCCEEEEecCCCeEEec
Confidence 4556655 355556665555444
No 29
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.60 E-value=0.094 Score=64.61 Aligned_cols=245 Identities=16% Similarity=0.142 Sum_probs=127.2
Q ss_pred eEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecC-CCC--CCC------CCCeeEEEEEE-cCCeEEEEEcC-
Q 006913 83 PVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGT-GSG--KGG------TGAIAGIAVST-SSSSVYINVKG- 148 (626)
Q Consensus 83 p~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~-~~~--~~~------~~~~I~s~~~d-~dG~LwIgT~~- 148 (626)
+.+|. +|+|||+. ++.|.++|..+.. ....+. ... ... .....+ +..+ .++.||++...
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G~~------i~~ig~~g~~G~~dG~~~~a~f~~P~G-Iavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDGNF------IVQIGSTGEEGLRDGSFEDATFNRPQG-LAYNAKKNLLYVADTEN 645 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCCCE------EEEEccCCCcCCCCCchhccccCCCcE-EEEeCCCCEEEEEeCCC
Confidence 55675 57899986 6789999987642 222221 110 000 011222 3344 34568998643
Q ss_pred CeEEEEeCCCcEEEEE-CCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCC-
Q 006913 149 RALFAFMTHGQLLWSA-GPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLS- 225 (626)
Q Consensus 149 gGL~a~d~~G~~~w~~-~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~- 225 (626)
+.|..+|..+..+-.+ +.......+..+........+-...+++++.++.|||+.. ++.|+.+|..++........+
T Consensus 646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~ 725 (1057)
T PLN02919 646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY 725 (1057)
T ss_pred ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence 5577788753332222 1100000000000000000000122456643688999865 567899998887654321110
Q ss_pred ------------CCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecCC--------CC-----------Cc
Q 006913 226 ------------SFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVGP--------LG-----------SA 273 (626)
Q Consensus 226 ------------s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~~--------l~-----------~~ 273 (626)
.......++.+.+|. |||+...++.+..+|..++...+.....+ ++ ..
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 011234577777774 99998777789999988776543221000 00 01
Q ss_pred eeeEEEeeCCeEEEEEc-CCeEEEEcCCC-CEEEEeeccC---CCCc----cccCceEEEEEEecCCcEEEE
Q 006913 274 EYAPVVDSNGWISVGSL-DGLLYSFSPSG-VLNKFSKSDT---SDSV----IQSSPYWFHLLGPSIGLKAIL 336 (626)
Q Consensus 274 ~sspvvD~dG~IWVGT~-~gGLy~~d~~g-~~~~~~~~~~---~~~~----ilssp~V~~Il~DsdG~IwI~ 336 (626)
...++++++|+|||+.. ++.|..+|+++ .......... .++. .+.. ...|..+.+|++||.
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~--P~GIavd~dG~lyVa 875 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE--PAGLALGENGRLFVA 875 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC--ceEEEEeCCCCEEEE
Confidence 23567788999999864 56888999864 3333322100 0000 0112 235777888998864
No 30
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.49 E-value=0.01 Score=66.64 Aligned_cols=215 Identities=17% Similarity=0.321 Sum_probs=114.5
Q ss_pred eeeeeEEeeCCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcc------------cCeEEec---CCeEEEEE-CCeE
Q 006913 38 RLSKPLIGEDGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIG------------TAPVHGG---TGEVYIVA-ENRV 99 (626)
Q Consensus 38 ~~Sspvid~dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~------------~sp~iD~---dG~IwVgT-~ggL 99 (626)
-..+|+. .++.||+|+ .+.++++|. +|+.+|++......++. .....++ ..+||+.| +..|
T Consensus 206 ~e~tPLk-vgdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~~a~a~~k~pc~~rIflpt~Darl 284 (773)
T COG4993 206 NEVTPLK-VGDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYGAAKADAKSPCPRRIFLPTADARL 284 (773)
T ss_pred ccccceE-ECCEEEEecCcceeEEeeccCCceeeecCCCCCCCcccccccccceecccccccccCCCceeEEeecCCceE
Confidence 3567877 788999999 678999998 99999998653211110 0111011 23599998 8999
Q ss_pred EEEECCCCccccceeEEEecCCC--------CCCCCCCeeEEE-EE------------EcCCeEEEEEcCCeE-EEEeC-
Q 006913 100 LKVDLLKIGTSESATQVFYGTGS--------GKGGTGAIAGIA-VS------------TSSSSVYINVKGRAL-FAFMT- 156 (626)
Q Consensus 100 ~~id~~~~~~~~~~~~~~~~~~~--------~~~~~~~~I~s~-~~------------d~dG~LwIgT~~gGL-~a~d~- 156 (626)
.++|.++++.- |.+.... .....+...+.. .. +.+-.+|.. .|+ -.+|.
T Consensus 285 IALdA~tGkvc-----~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~---sgVir~fdv~ 356 (773)
T COG4993 285 IALDADTGKVC-----WSFANKGALNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEP---SGVIRGFDVL 356 (773)
T ss_pred EEEeCCCCcEe-----heeccCceeeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeecc---Cccccccccc
Confidence 99999998642 2222110 000001011100 00 111123322 233 35665
Q ss_pred CCcEEEEECCccccccccc--ccccCCCCCccccceEEEcCCCeEEEEcCC------------------CeEEEEeCCCC
Q 006913 157 HGQLLWSAGPVLDQLGYRQ--GCTKTDVDCYFTSVPVIDQCEGSIYISNTQ------------------GELYSLSAHSP 216 (626)
Q Consensus 157 ~G~~~w~~~~~~~~~~~~~--~~~~~l~~~~i~sspviD~~dG~LwIGT~~------------------GgL~~ld~~tg 216 (626)
+|+..|...+.-.+..... +..-..+.-+..++..+|...|.||++..+ .++.++|.++|
T Consensus 357 tG~l~w~~D~gnpD~t~p~~~g~tyt~nspn~W~~~SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssivAlD~~TG 436 (773)
T COG4993 357 TGKLTWAGDPGNPDPTAPTAPGQTYTRNSPNSWASASYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSIVALDATTG 436 (773)
T ss_pred cCceEEccCCCCCCCCCCCCCCceeecCCCCcccccccCCCCCeEEEeCCCCChhhccCCCCcccccccceeEEecCCCc
Confidence 4888886422111100000 000000111223445567556888987643 37999999999
Q ss_pred eEEEEEcCCC-----CC--c---ceeeeeecCCeE---EEEEcCCCEEEEEECCCCcEEE
Q 006913 217 YFNWIQDLSS-----FD--K---AFTLTPGNNGYL---YVTIPVRALVLALDTSSGNILW 263 (626)
Q Consensus 217 ~~~w~~~~~s-----~~--~---v~sI~~D~dG~L---wVGT~~gG~l~alD~~tG~~~w 263 (626)
+.+|.+.... ++ . ...+. .||.+ .++-...|.+|.+|+.+|+.+-
T Consensus 437 ~~kW~yQtvhhDlWDmDvp~qp~L~D~~--~DG~~vpalv~ptk~G~~YVlDRrtGe~lv 494 (773)
T COG4993 437 KLKWVYQTVHHDLWDMDVPAQPTLLDIT--KDGKVVPALVHPTKNGFIYVLDRRTGELLV 494 (773)
T ss_pred ceeeeeeccCcchhcccCCCCceEEEee--cCCcEeeeeecccccCcEEEEEcCCCcccc
Confidence 9999865321 11 1 11222 25642 2332356788999999998753
No 31
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.92 E-value=0.42 Score=50.65 Aligned_cols=178 Identities=13% Similarity=0.122 Sum_probs=81.8
Q ss_pred cCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCe
Q 006913 138 SSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPY 217 (626)
Q Consensus 138 ~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~ 217 (626)
.+...|+... .|+.....+|-..|..-+ ++ ..+.+..+ .-...+ ++.+++.+..|.||+= .++|+
T Consensus 70 ~~~~g~ivG~-~g~ll~T~DgG~tW~~v~----l~------~~lpgs~~-~i~~l~--~~~~~l~~~~G~iy~T-~DgG~ 134 (302)
T PF14870_consen 70 DGNEGWIVGE-PGLLLHTTDGGKTWERVP----LS------SKLPGSPF-GITALG--DGSAELAGDRGAIYRT-TDGGK 134 (302)
T ss_dssp ETTEEEEEEE-TTEEEEESSTTSS-EE--------------TT-SS-EE-EEEEEE--TTEEEEEETT--EEEE-SSTTS
T ss_pred cCCceEEEcC-CceEEEecCCCCCcEEee----cC------CCCCCCee-EEEEcC--CCcEEEEcCCCcEEEe-CCCCC
Confidence 4567888765 456666666555586311 00 01111111 112334 6778877777777764 45543
Q ss_pred EEEEEcCC-CCCcceeeeeecCCeEEEEEcCCCEEE-EEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEE
Q 006913 218 FNWIQDLS-SFDKAFTLTPGNNGYLYVTIPVRALVL-ALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLY 295 (626)
Q Consensus 218 ~~w~~~~~-s~~~v~sI~~D~dG~LwVGT~~gG~l~-alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy 295 (626)
.|..-.. ....+..+....||++.+.+.. |.++ ..| .|...|+.....-...+.++...+++.+|+.+.++.|+
T Consensus 135 -tW~~~~~~~~gs~~~~~r~~dG~~vavs~~-G~~~~s~~--~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~ 210 (302)
T PF14870_consen 135 -TWQAVVSETSGSINDITRSSDGRYVAVSSR-GNFYSSWD--PGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQ 210 (302)
T ss_dssp -SEEEEE-S----EEEEEE-TTS-EEEEETT-SSEEEEE---TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEE
T ss_pred -CeeEcccCCcceeEeEEECCCCcEEEEECc-ccEEEEec--CCCccceEEccCccceehhceecCCCCEEEEeCCcEEE
Confidence 5764322 2234555666778886666644 4444 444 46555653222112346678888899999999666655
Q ss_pred EEc-CCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEE
Q 006913 296 SFS-PSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILC 337 (626)
Q Consensus 296 ~~d-~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T 337 (626)
.-+ ++....|.....+.. ...-.+..+....++.+|+..
T Consensus 211 ~s~~~~~~~~w~~~~~~~~---~~~~~~ld~a~~~~~~~wa~g 250 (302)
T PF14870_consen 211 FSDDPDDGETWSEPIIPIK---TNGYGILDLAYRPPNEIWAVG 250 (302)
T ss_dssp EEE-TTEEEEE---B-TTS---S--S-EEEEEESSSS-EEEEE
T ss_pred EccCCCCccccccccCCcc---cCceeeEEEEecCCCCEEEEe
Confidence 555 233334433211110 112224456667789998644
No 32
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.66 E-value=0.91 Score=46.01 Aligned_cols=221 Identities=10% Similarity=0.071 Sum_probs=113.4
Q ss_pred EEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCCCccccceeEEEecCCC
Q 006913 49 KIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLKIGTSESATQVFYGTGS 122 (626)
Q Consensus 49 ~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~ 122 (626)
.+|+.. ++.++.+|. +++....+.... ....+..+.+|. +|+.. ++.|..+|..++.. ...+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----~~~~~~-- 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-----IGTLPS-- 71 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-----EEeccC--
Confidence 466644 567888997 677654443321 123456666776 56654 57788889876531 111111
Q ss_pred CCCCCCCeeEEEEEEcCC-eEEEEEc-CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeE
Q 006913 123 GKGGTGAIAGIAVSTSSS-SVYINVK-GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSI 199 (626)
Q Consensus 123 ~~~~~~~~I~s~~~d~dG-~LwIgT~-~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~L 199 (626)
. ... .......++ .+|++.. ++.|..+|.. ++.+..... + . . ...+...+ +|.+
T Consensus 72 ---~-~~~-~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-----~------~-----~-~~~~~~~~-dg~~ 128 (300)
T TIGR03866 72 ---G-PDP-ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-----G------V-----E-PEGMAVSP-DGKI 128 (300)
T ss_pred ---C-CCc-cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-----C------C-----C-cceEEECC-CCCE
Confidence 0 111 122233444 5777643 4668888875 544333200 0 0 0 12234444 4544
Q ss_pred -EEEcCCC-eEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecC--CC--CC
Q 006913 200 -YISNTQG-ELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVG--PL--GS 272 (626)
Q Consensus 200 -wIGT~~G-gL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~--~l--~~ 272 (626)
+++..++ .++.+|.++++......... ....+..+.+|. ||++...++.+..+|..+++........ .. ..
T Consensus 129 l~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 206 (300)
T TIGR03866 129 VVNTSETTNMAHFIDTKTYEIVDNVLVDQ--RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEA 206 (300)
T ss_pred EEEEecCCCeEEEEeCCCCeEEEEEEcCC--CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccccccc
Confidence 4444433 35667887766543322111 123344555664 6666544578888998888654332211 00 01
Q ss_pred -ceeeEEEeeCCe-EEEEE-cCCeEEEEcCC-CCEE
Q 006913 273 -AEYAPVVDSNGW-ISVGS-LDGLLYSFSPS-GVLN 304 (626)
Q Consensus 273 -~~sspvvD~dG~-IWVGT-~~gGLy~~d~~-g~~~ 304 (626)
....+..+++|. +|++. .++.+..+|.. ++..
T Consensus 207 ~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 207 VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL 242 (300)
T ss_pred CCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 112345566665 56654 34578888864 4443
No 33
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.61 E-value=1.1 Score=48.54 Aligned_cols=61 Identities=15% Similarity=0.256 Sum_probs=37.5
Q ss_pred eeEEeeCCEEEEEeC--------------CcEEEEcC---CCCE-EEEEeCCCCCCcccCeEEecCCeEEEEECCeEEEE
Q 006913 41 KPLIGEDGKIYACSE--------------KTLFAFES---NGTI-AWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKV 102 (626)
Q Consensus 41 spvid~dG~IwIgSd--------------ggL~a~d~---~G~~-~W~~~~~~~~~i~~sp~iD~dG~IwVgT~ggL~~i 102 (626)
.+.+|.+|+|||+.. +.+++++. +|.. .++...... .....+.+..+| |||+....|+++
T Consensus 18 ~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l-~~p~Gi~~~~~G-lyV~~~~~i~~~ 95 (367)
T TIGR02604 18 AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL-SMVTGLAVAVGG-VYVATPPDILFL 95 (367)
T ss_pred eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC-CCccceeEecCC-EEEeCCCeEEEE
Confidence 447788999999852 25777764 3443 222222211 223456666777 999887788888
Q ss_pred E
Q 006913 103 D 103 (626)
Q Consensus 103 d 103 (626)
.
T Consensus 96 ~ 96 (367)
T TIGR02604 96 R 96 (367)
T ss_pred e
Confidence 4
No 34
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.54 E-value=1.5 Score=48.32 Aligned_cols=143 Identities=10% Similarity=0.116 Sum_probs=77.7
Q ss_pred EEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCC
Q 006913 136 STSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHS 215 (626)
Q Consensus 136 ~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~t 215 (626)
...+|.+++....+.++.-...|...|.... .+ . ...+ .++.... ++.+|+.+..|+++.-+ +.
T Consensus 246 ~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~----~~----~-----~~~l-~~v~~~~-dg~l~l~g~~G~l~~S~-d~ 309 (398)
T PLN00033 246 RSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN----RA----S-----ARRI-QNMGWRA-DGGLWLLTRGGGLYVSK-GT 309 (398)
T ss_pred EcCCCCEEEEECCccEEEecCCCCcceEEec----CC----C-----ccce-eeeeEcC-CCCEEEEeCCceEEEec-CC
Confidence 3456777766655555555555766676311 00 0 0111 3344453 88999998888877653 34
Q ss_pred CeE----EEEEcC-C-CCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEec--CCCCCceeeEEEeeCCeEEE
Q 006913 216 PYF----NWIQDL-S-SFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSV--GPLGSAEYAPVVDSNGWISV 287 (626)
Q Consensus 216 g~~----~w~~~~-~-s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~--~~l~~~~sspvvD~dG~IWV 287 (626)
|+. .|.... . ....+..+....++.+|++.. +|.++.. .++-..|+... +........+....++..|+
T Consensus 310 G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-~G~v~~s--~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~ 386 (398)
T PLN00033 310 GLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG-SGILLRS--TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFV 386 (398)
T ss_pred CCcccccceeecccCCCCcceEEEEEcCCCcEEEEEC-CCcEEEe--CCCCcceeEccccCCCCcceeEEEEcCCCceEE
Confidence 331 233211 1 111244555667889999885 4555443 24555676532 21111234566565789999
Q ss_pred EEcCCeEEEE
Q 006913 288 GSLDGLLYSF 297 (626)
Q Consensus 288 GT~~gGLy~~ 297 (626)
...+|-|.++
T Consensus 387 ~G~~G~il~~ 396 (398)
T PLN00033 387 LGNDGVLLRY 396 (398)
T ss_pred EeCCcEEEEe
Confidence 8877666554
No 35
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.49 E-value=0.92 Score=48.07 Aligned_cols=223 Identities=13% Similarity=0.109 Sum_probs=98.0
Q ss_pred eCCEEEEEeCCcEEEEcCCCCEEEEEe-CCCC-CCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCC
Q 006913 46 EDGKIYACSEKTLFAFESNGTIAWSLD-LDFT-CNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGS 122 (626)
Q Consensus 46 ~dG~IwIgSdggL~a~d~~G~~~W~~~-~~~~-~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~ 122 (626)
.+...||..+.++.....+|-..|... +... ......+..-.++.+++++ .+.||+- .+.+. .|..-..
T Consensus 70 ~~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG~------tW~~~~~- 141 (302)
T PF14870_consen 70 DGNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRT-TDGGK------TWQAVVS- 141 (302)
T ss_dssp ETTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEE-SSTTS------SEEEEE--
T ss_pred cCCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCCC------CeeEccc-
Confidence 356778866555544444444356542 2111 0011122223456778777 4556654 44442 2321110
Q ss_pred CCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEE
Q 006913 123 GKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYIS 202 (626)
Q Consensus 123 ~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIG 202 (626)
.....+.......+|++.+.+..+.++.--..|+..|.... +. .... ..++...+ ++.||+.
T Consensus 142 ---~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~-------r~------~~~r-iq~~gf~~-~~~lw~~ 203 (302)
T PF14870_consen 142 ---ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN-------RN------SSRR-IQSMGFSP-DGNLWML 203 (302)
T ss_dssp ---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---------------SSS--EEEEEE-T-TS-EEEE
T ss_pred ---CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc-------cC------ccce-ehhceecC-CCCEEEE
Confidence 01123344445577776656655556544334655575311 10 0011 24455665 8999999
Q ss_pred cCCCeEEEEeCCCCeEEEEEcCCC----CCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecC--CCCCceee
Q 006913 203 NTQGELYSLSAHSPYFNWIQDLSS----FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVG--PLGSAEYA 276 (626)
Q Consensus 203 T~~GgL~~ld~~tg~~~w~~~~~s----~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~--~l~~~~ss 276 (626)
+..|.|..-+.......|...... ...+..++...++.+|++.. +|.+++- .+|-..|+.... ....-...
T Consensus 204 ~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~S--~DgGktW~~~~~~~~~~~n~~~ 280 (302)
T PF14870_consen 204 ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLVS--TDGGKTWQKDRVGENVPSNLYR 280 (302)
T ss_dssp ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEEE--SSTTSS-EE-GGGTTSSS---E
T ss_pred eCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEEe--CCCCccceECccccCCCCceEE
Confidence 877666655523335667754321 12256677778899999984 4555542 234456765322 11111333
Q ss_pred EEEeeCCeEEEEEcCCeEEEE
Q 006913 277 PVVDSNGWISVGSLDGLLYSF 297 (626)
Q Consensus 277 pvvD~dG~IWVGT~~gGLy~~ 297 (626)
++...++.-|+-..+|-|.+|
T Consensus 281 i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 281 IVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEETTEEEEE-STTEEEEE
T ss_pred EEEcCCCceEEECCCcEEEEe
Confidence 555546677776666655554
No 36
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.19 E-value=2.7 Score=46.38 Aligned_cols=199 Identities=14% Similarity=0.130 Sum_probs=100.7
Q ss_pred ceeeeeEEeeCCEEEEEeC----CcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCe-EEEEECCeEEEEECCCCcccc
Q 006913 37 FRLSKPLIGEDGKIYACSE----KTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVAENRVLKVDLLKIGTSE 111 (626)
Q Consensus 37 ~~~Sspvid~dG~IwIgSd----ggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT~ggL~~id~~~~~~~~ 111 (626)
.-.|+|+| ..++||.-++ |.||..|.+|+-+.. +.+.. ... .--...+|. |.....|.+|.+||.+...
T Consensus 226 ~~vS~PmI-V~~RvYFlsD~eG~GnlYSvdldGkDlrr-HTnFt-dYY-~R~~nsDGkrIvFq~~GdIylydP~td~l-- 299 (668)
T COG4946 226 GNVSSPMI-VGERVYFLSDHEGVGNLYSVDLDGKDLRR-HTNFT-DYY-PRNANSDGKRIVFQNAGDIYLYDPETDSL-- 299 (668)
T ss_pred CCcCCceE-EcceEEEEecccCccceEEeccCCchhhh-cCCch-hcc-ccccCCCCcEEEEecCCcEEEeCCCcCcc--
Confidence 45677777 5667777663 467888876653211 11111 000 000113454 4444467788889887532
Q ss_pred ceeEEEecCCCC-CCCCCCeeEEE-----EEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCc
Q 006913 112 SATQVFYGTGSG-KGGTGAIAGIA-----VSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCY 185 (626)
Q Consensus 112 ~~~~~~~~~~~~-~~~~~~~I~s~-----~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~ 185 (626)
.+...+.... .......+..+ ....+|.++.-...+..+.+++.+...-+. +.+. .
T Consensus 300 --ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv-------~~~~---------~ 361 (668)
T COG4946 300 --EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQV-------GKKG---------G 361 (668)
T ss_pred --eeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEc-------CCCC---------c
Confidence 1222221000 00000010000 111344444333345566666643222221 1010 0
Q ss_pred cc-cceEEEcCCCeEEEEcCCC-eEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEE
Q 006913 186 FT-SVPVIDQCEGSIYISNTQG-ELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILW 263 (626)
Q Consensus 186 i~-sspviD~~dG~LwIGT~~G-gL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w 263 (626)
+. .....| ...+.+|+.+| .|-.+|.+++++.-... ....+.++.++.+|.-.+..++...++.+|..+|+..-
T Consensus 362 VrY~r~~~~--~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~ 437 (668)
T COG4946 362 VRYRRIQVD--PEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL 437 (668)
T ss_pred eEEEEEccC--CcceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE
Confidence 11 122334 34788999877 78899999988765433 23457788888898744444456788888888887653
No 37
>PRK13684 Ycf48-like protein; Provisional
Probab=96.14 E-value=2.5 Score=45.43 Aligned_cols=255 Identities=13% Similarity=0.098 Sum_probs=116.4
Q ss_pred eCCEEEE-EeCCcEEEEcCCCCEEEEEeCCC---CCCcccCeEEecCCeEEEEEC-CeEEEEECCCCccccceeEEEecC
Q 006913 46 EDGKIYA-CSEKTLFAFESNGTIAWSLDLDF---TCNIGTAPVHGGTGEVYIVAE-NRVLKVDLLKIGTSESATQVFYGT 120 (626)
Q Consensus 46 ~dG~IwI-gSdggL~a~d~~G~~~W~~~~~~---~~~i~~sp~iD~dG~IwVgT~-ggL~~id~~~~~~~~~~~~~~~~~ 120 (626)
++.+.|+ |..+.++.=. +|-..|...... ......++..+ .+..|++.. +.|++ ..+.+. .|..-.
T Consensus 55 d~~~g~avG~~G~il~T~-DgG~tW~~~~~~~~~~~~~l~~v~~~-~~~~~~~G~~g~i~~-S~DgG~------tW~~~~ 125 (334)
T PRK13684 55 DPNHGWLVGSNRTLLETN-DGGETWEERSLDLPEENFRLISISFK-GDEGWIVGQPSLLLH-TTDGGK------NWTRIP 125 (334)
T ss_pred CCCcEEEEECCCEEEEEc-CCCCCceECccCCcccccceeeeEEc-CCcEEEeCCCceEEE-ECCCCC------CCeEcc
Confidence 4455665 4455555544 333357643211 00112234443 345677664 44554 444442 232211
Q ss_pred CCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEE
Q 006913 121 GSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIY 200 (626)
Q Consensus 121 ~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~Lw 200 (626)
.. ....+.... +....++.+|+....++|+.-+..|+ .|.... . + . ...+ ..+..++ ++.++
T Consensus 126 ~~-~~~~~~~~~-i~~~~~~~~~~~g~~G~i~~S~DgG~-tW~~~~---~-~------~---~g~~-~~i~~~~-~g~~v 187 (334)
T PRK13684 126 LS-EKLPGSPYL-ITALGPGTAEMATNVGAIYRTTDGGK-NWEALV---E-D------A---AGVV-RNLRRSP-DGKYV 187 (334)
T ss_pred CC-cCCCCCceE-EEEECCCcceeeeccceEEEECCCCC-CceeCc---C-C------C---cceE-EEEEECC-CCeEE
Confidence 10 001111222 22334556777776555654443354 476310 0 0 0 0111 2234443 56555
Q ss_pred EEcCCCeEEEEeCCCCeEEEEEcCC-CCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC-C--CCceee
Q 006913 201 ISNTQGELYSLSAHSPYFNWIQDLS-SFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP-L--GSAEYA 276 (626)
Q Consensus 201 IGT~~GgL~~ld~~tg~~~w~~~~~-s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~-l--~~~~ss 276 (626)
+....|.++.. .+.+...|..... ....+.++....+|++|+... +|.+. +...++-..|+....+ . .....+
T Consensus 188 ~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~-~~s~d~G~sW~~~~~~~~~~~~~l~~ 264 (334)
T PRK13684 188 AVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIR-FNDPDDLESWSKPIIPEITNGYGYLD 264 (334)
T ss_pred EEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEE-EccCCCCCccccccCCccccccceee
Confidence 55455655544 2233355764322 223345566666888998874 44443 3212344566632221 1 111334
Q ss_pred EEEeeCCeEEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEE
Q 006913 277 PVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAI 335 (626)
Q Consensus 277 pvvD~dG~IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI 335 (626)
+...+++.+|+...+|.++.-...| ..|..... ... .+ ..++.++...++..|+
T Consensus 265 v~~~~~~~~~~~G~~G~v~~S~d~G-~tW~~~~~-~~~--~~-~~~~~~~~~~~~~~~~ 318 (334)
T PRK13684 265 LAYRTPGEIWAGGGNGTLLVSKDGG-KTWEKDPV-GEE--VP-SNFYKIVFLDPEKGFV 318 (334)
T ss_pred EEEcCCCCEEEEcCCCeEEEeCCCC-CCCeECCc-CCC--CC-cceEEEEEeCCCceEE
Confidence 5556678999998877777544334 34433210 011 22 2445555555667764
No 38
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=96.13 E-value=0.012 Score=42.69 Aligned_cols=39 Identities=33% Similarity=0.650 Sum_probs=26.2
Q ss_pred CcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913 259 GNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS 300 (626)
Q Consensus 259 G~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~ 300 (626)
|+.+|++..+. ....+|+++ +|.||+++.++.||++|+.
T Consensus 1 G~~~W~~~~~~--~~~~~~~v~-~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 1 GKVLWSYDTGG--PIWSSPAVA-GGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp S-EEEEEE-SS-----S--EEC-TSEEEEE-TTSEEEEEETT
T ss_pred CceeEEEECCC--CcCcCCEEE-CCEEEEEcCCCEEEEEeCC
Confidence 57889887762 345678887 8999999999999999863
No 39
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=96.04 E-value=0.45 Score=48.40 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=85.1
Q ss_pred CCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCC
Q 006913 128 GAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQG 206 (626)
Q Consensus 128 ~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~G 206 (626)
+.+-....+-.+..|.-.++++.+-..|- +|+.+.... ++ .++ .+.-+-+ +|.|..-.+.+
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-----~~-----------s~V-tSlEvs~-dG~ilTia~gs 205 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-----FN-----------SPV-TSLEVSQ-DGRILTIAYGS 205 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-----cC-----------CCC-cceeecc-CCCEEEEecCc
Confidence 33444455667777777778888888885 587765531 11 111 2333443 77777666788
Q ss_pred eEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEE
Q 006913 207 ELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWIS 286 (626)
Q Consensus 207 gL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IW 286 (626)
+|..+|+++-...-.+..+- .+.+.-...+..+||+......++.+|-.||+.+-.++.+-.+. +.+.-..++|.+|
T Consensus 206 sV~Fwdaksf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp-VhcVrFSPdGE~y 282 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP-VHCVRFSPDGELY 282 (334)
T ss_pred eeEEeccccccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc-eEEEEECCCCcee
Confidence 89999988754443333221 12222222345788876556788999988998765433322222 3335566788888
Q ss_pred E-EEcCCeE
Q 006913 287 V-GSLDGLL 294 (626)
Q Consensus 287 V-GT~~gGL 294 (626)
. |+.+|.|
T Consensus 283 AsGSEDGTi 291 (334)
T KOG0278|consen 283 ASGSEDGTI 291 (334)
T ss_pred eccCCCceE
Confidence 7 4444433
No 40
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.83 E-value=2.8 Score=43.48 Aligned_cols=177 Identities=12% Similarity=0.064 Sum_probs=99.1
Q ss_pred CeEEecCCeEEEEEC----CeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeE-EEEeC
Q 006913 82 APVHGGTGEVYIVAE----NRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRAL-FAFMT 156 (626)
Q Consensus 82 sp~iD~dG~IwVgT~----ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL-~a~d~ 156 (626)
.+..+.+|.+|.+|. ..|..+|+.+++. ....... ....+=-+...++.||.-|+..++ +.||+
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~-----~~~~~l~------~~~FgEGit~~~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKV-----LQSVPLP------PRYFGEGITILGDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTSSE-----EEEEE-T------TT--EEEEEEETTEEEEEESSSSEEEEEET
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCCcE-----EEEEECC------ccccceeEEEECCEEEEEEecCCeEEEEcc
Confidence 455557899999992 3789999998752 2111111 112222233457899999987554 67887
Q ss_pred C-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcC--CC--CCcce
Q 006913 157 H-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDL--SS--FDKAF 231 (626)
Q Consensus 157 ~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~--~s--~~~v~ 231 (626)
+ -+.+-.+ .|.. .. .-+..| +..||++.....|+.+|+++-+..-.... .+ .....
T Consensus 118 ~tl~~~~~~-------~y~~-------EG---WGLt~d--g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LN 178 (264)
T PF05096_consen 118 NTLKKIGTF-------PYPG-------EG---WGLTSD--GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLN 178 (264)
T ss_dssp TTTEEEEEE-------E-SS-------S-----EEEEC--SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EE
T ss_pred ccceEEEEE-------ecCC-------cc---eEEEcC--CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcE
Confidence 5 4443332 1110 01 113445 67899998888999999987554433221 11 11111
Q ss_pred eeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC-------------CCCceeeEEEee-CCeEEEEE
Q 006913 232 TLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP-------------LGSAEYAPVVDS-NGWISVGS 289 (626)
Q Consensus 232 sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~-------------l~~~~sspvvD~-dG~IWVGT 289 (626)
- .+-.+|.||.-......++.+|+.+|.+.-...... ...+...++.|+ .+++||..
T Consensus 179 E-LE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 179 E-LEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp E-EEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred e-EEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 1 122489999988777799999999999875432210 012455666653 35666654
No 41
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=95.75 E-value=0.014 Score=37.66 Aligned_cols=22 Identities=14% Similarity=-0.040 Sum_probs=18.5
Q ss_pred ccCceEEEEEEecCCcEEEEEe
Q 006913 317 QSSPYWFHLLGPSIGLKAILCL 338 (626)
Q Consensus 317 lssp~V~~Il~DsdG~IwI~T~ 338 (626)
++++.|++|++|++|+|||+|.
T Consensus 2 L~~n~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 2 LPNNNIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp BSSSCEEEEEE-TTSCEEEEET
T ss_pred CCCCeEEEEEEcCCcCEEEEeC
Confidence 5778899999999999999873
No 42
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=95.55 E-value=0.032 Score=40.40 Aligned_cols=28 Identities=32% Similarity=0.685 Sum_probs=20.0
Q ss_pred cccceEEEcCCCeEEEEcCCCeEEEEeCCC
Q 006913 186 FTSVPVIDQCEGSIYISNTQGELYSLSAHS 215 (626)
Q Consensus 186 i~sspviD~~dG~LwIGT~~GgL~~ld~~t 215 (626)
+..+|+++ ++.||+++.+|.|+++|+++
T Consensus 13 ~~~~~~v~--~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 13 IWSSPAVA--GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp --S--EEC--TSEEEEE-TTSEEEEEETT-
T ss_pred cCcCCEEE--CCEEEEEcCCCEEEEEeCCC
Confidence 34668887 89999999999999999864
No 43
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.50 E-value=3.2 Score=41.91 Aligned_cols=230 Identities=11% Similarity=0.110 Sum_probs=117.3
Q ss_pred eeEEeeCCE-EEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCCCccccce
Q 006913 41 KPLIGEDGK-IYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLKIGTSESA 113 (626)
Q Consensus 41 spvid~dG~-IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~~~~~~~~ 113 (626)
.+....+|. +|++. ++.+..+|. +++....+.... . ...+..+.+|+ +|++. ++.|..+|..+..
T Consensus 35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~----- 106 (300)
T TIGR03866 35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP--D-PELFALHPNGKILYIANEDDNLVTVIDIETRK----- 106 (300)
T ss_pred ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC--C-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-----
Confidence 355555664 56654 467888897 666543333221 1 22344556665 66654 5778888987642
Q ss_pred eEEEecCCCCCCCCCCeeEEEEEEcCCeEEE-EEcCC-eEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccce
Q 006913 114 TQVFYGTGSGKGGTGAIAGIAVSTSSSSVYI-NVKGR-ALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVP 190 (626)
Q Consensus 114 ~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwI-gT~~g-GL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ssp 190 (626)
....+.. +.....+....+|.+++ +..++ -+..+|.. ++...... .+ .. ...+
T Consensus 107 ~~~~~~~-------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-----~~-----------~~-~~~~ 162 (300)
T TIGR03866 107 VLAEIPV-------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-----VD-----------QR-PRFA 162 (300)
T ss_pred EEeEeeC-------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-----cC-----------CC-ccEE
Confidence 1111110 00112233345565554 43332 24556764 44432210 00 00 1123
Q ss_pred EEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcC--CCC----CcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEE
Q 006913 191 VIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDL--SSF----DKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNIL 262 (626)
Q Consensus 191 viD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~--~s~----~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~ 262 (626)
...+.+..||+++. ++.++.+|.++++..-.... ... .....+..+.+|+ +|++......+..+|..+++..
T Consensus 163 ~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 163 EFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL 242 (300)
T ss_pred EECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 34431345667653 67899999988765322211 110 0122344556664 5776544457888898888765
Q ss_pred EEEecCCCCCceeeEEEeeCCe-EEEEE-cCCeEEEEcCC-CCEEE
Q 006913 263 WHKSVGPLGSAEYAPVVDSNGW-ISVGS-LDGLLYSFSPS-GVLNK 305 (626)
Q Consensus 263 w~~~~~~l~~~~sspvvD~dG~-IWVGT-~~gGLy~~d~~-g~~~~ 305 (626)
-....+ .....+...++|. |+++. .++.|..+|.. ++.+.
T Consensus 243 ~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 243 DYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred EEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 433222 1233455665664 66654 46788899875 44433
No 44
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=95.44 E-value=0.96 Score=51.03 Aligned_cols=157 Identities=18% Similarity=0.259 Sum_probs=78.7
Q ss_pred CcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEECCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEE
Q 006913 56 KTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAV 135 (626)
Q Consensus 56 ggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~ 135 (626)
...+++|.+|.++|....... ....+..-.+|.++++..+.+..+|..+. ..+.+...... ...-....
T Consensus 128 ~~~~~iD~~G~Vrw~~~~~~~--~~~~~~~l~nG~ll~~~~~~~~e~D~~G~------v~~~~~l~~~~---~~~HHD~~ 196 (477)
T PF05935_consen 128 SYTYLIDNNGDVRWYLPLDSG--SDNSFKQLPNGNLLIGSGNRLYEIDLLGK------VIWEYDLPGGY---YDFHHDID 196 (477)
T ss_dssp EEEEEEETTS-EEEEE-GGGT----SSEEE-TTS-EEEEEBTEEEEE-TT--------EEEEEE--TTE---E-B-S-EE
T ss_pred ceEEEECCCccEEEEEccCcc--ccceeeEcCCCCEEEecCCceEEEcCCCC------EEEeeecCCcc---cccccccE
Confidence 468999999999998866421 12124456889999998999999999875 23333221100 00112233
Q ss_pred EEcCCeEEEEEc--------------CCeEEEEeCCCcEEEEECCccccc-cccc----------ccccCCCCCccc-cc
Q 006913 136 STSSSSVYINVK--------------GRALFAFMTHGQLLWSAGPVLDQL-GYRQ----------GCTKTDVDCYFT-SV 189 (626)
Q Consensus 136 ~d~dG~LwIgT~--------------~gGL~a~d~~G~~~w~~~~~~~~~-~~~~----------~~~~~l~~~~i~-ss 189 (626)
...+|++.+-+. ...|+.+|++|+++|.... ...+ +++. ........++++ .+
T Consensus 197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~-~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDF-FDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEG-GGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred ECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEeh-HHhCCcccccccccccccccccCCCCCCccccCc
Confidence 445555443222 4678899977999987411 0111 1111 000001112232 34
Q ss_pred eEEEcCCCeEEEEcCC-CeEEEEeCCCCeEEEEEcC
Q 006913 190 PVIDQCEGSIYISNTQ-GELYSLSAHSPYFNWIQDL 224 (626)
Q Consensus 190 pviD~~dG~LwIGT~~-GgL~~ld~~tg~~~w~~~~ 224 (626)
+.+|+.++.|.+.... ..|+.+|.+++++.|....
T Consensus 276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 5556447889998874 4899999999999998643
No 45
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.40 E-value=3.9 Score=42.17 Aligned_cols=203 Identities=14% Similarity=0.118 Sum_probs=97.9
Q ss_pred ceeeeeEEee-CCEEEEEeC--CcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCccc-
Q 006913 37 FRLSKPLIGE-DGKIYACSE--KTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTS- 110 (626)
Q Consensus 37 ~~~Sspvid~-dG~IwIgSd--ggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~- 110 (626)
.-.|+...+. .+.||+.++ +.|+.++.+|+++..+++.... -.-.+..-.+|.+.+.. .+.|+.++.......
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~-D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFG-DYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-S-SEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCC-CceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 3478888876 588999884 5799999999988777664321 12233444667666666 577887766322110
Q ss_pred cce--eEEEecCCCCCCCCCCeeEEEEEE-cCCeEEEEEcC--CeEEEEeC--C-CcEEEEECCcccccccccccccCCC
Q 006913 111 ESA--TQVFYGTGSGKGGTGAIAGIAVST-SSSSVYINVKG--RALFAFMT--H-GQLLWSAGPVLDQLGYRQGCTKTDV 182 (626)
Q Consensus 111 ~~~--~~~~~~~~~~~~~~~~~I~s~~~d-~dG~LwIgT~~--gGL~a~d~--~-G~~~w~~~~~~~~~~~~~~~~~~l~ 182 (626)
... ..+..+.. ...+.-+..++.| ..++++++-.. .+|+.++. . ......... .+. . ....
T Consensus 101 ~~~~~~~~~l~~~---~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~---~~~--~---~~~~ 169 (248)
T PF06977_consen 101 DRADVQKISLGFP---NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQ---DLD--D---DKLF 169 (248)
T ss_dssp -EEEEEEEE---S------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-H---HHH------HT--
T ss_pred chhhceEEecccc---cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccc---ccc--c---ccce
Confidence 000 11111111 0111223444455 45788888654 46777774 2 222111100 000 0 0000
Q ss_pred CCccccceEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCC--------CCcceeeeeecCCeEEEEEcCCCEEEE
Q 006913 183 DCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSS--------FDKAFTLTPGNNGYLYVTIPVRALVLA 253 (626)
Q Consensus 183 ~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s--------~~~v~sI~~D~dG~LwVGT~~gG~l~a 253 (626)
-.. .+.+.+++..|++||=+. ..-|..+|.++ ++.-...... +...-.|+.|.+|+|||.+.. ..+|.
T Consensus 170 ~~d-~S~l~~~p~t~~lliLS~es~~l~~~d~~G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp-Nlfy~ 246 (248)
T PF06977_consen 170 VRD-LSGLSYDPRTGHLLILSDESRLLLELDRQG-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP-NLFYR 246 (248)
T ss_dssp SS----EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETT-TEEEE
T ss_pred ecc-ccceEEcCCCCeEEEEECCCCeEEEECCCC-CEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCC-ceEEE
Confidence 111 255667766788887554 56788899665 5544333221 223456889999999999854 46665
Q ss_pred E
Q 006913 254 L 254 (626)
Q Consensus 254 l 254 (626)
+
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 4
No 46
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=4.9 Score=42.17 Aligned_cols=246 Identities=14% Similarity=0.126 Sum_probs=125.0
Q ss_pred CccccccCCceeeeeEEeeCCEEEEE-e-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE---CCeEEE
Q 006913 28 AKVPYRRSAFRLSKPLIGEDGKIYAC-S-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA---ENRVLK 101 (626)
Q Consensus 28 ~~~~~~~~~~~~Sspvid~dG~IwIg-S-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT---~ggL~~ 101 (626)
||+.-...+.+. +.-.+.+|...+. + ++.|..||. +|+..-.+.... .++....+...+..+..++ +..|.+
T Consensus 7 ak~f~~~~~~i~-sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk-yG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 7 AKVFRETNGKIN-SLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK-YGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccCCCcee-EEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc-ccccEEEEecCCceEEEccCCCCCceEE
Confidence 344333334444 4444467766664 4 568999998 887764443221 1122222333444444444 568888
Q ss_pred EECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccC
Q 006913 102 VDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKT 180 (626)
Q Consensus 102 id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~ 180 (626)
++..+++. +.++- ++...++.+.+...++...-++.++-|...|.. -+..-.. ..
T Consensus 85 Lsl~dNky----lRYF~------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--------------~~ 140 (311)
T KOG1446|consen 85 LSLHDNKY----LRYFP------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--------------NL 140 (311)
T ss_pred EEeecCce----EEEcC------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--------------ec
Confidence 88877642 23321 122334444444445444445666677777753 1110000 00
Q ss_pred CCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCCC---CeEEEE-EcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEE
Q 006913 181 DVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAHS---PYFNWI-QDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLAL 254 (626)
Q Consensus 181 l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~t---g~~~w~-~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~al 254 (626)
.. ...++.|+ +|-|+.... .+.|-.||.+. |-+.-. ...+.......+-...|| .|.+.| ..+.++.+
T Consensus 141 -~~---~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~l 214 (311)
T KOG1446|consen 141 -SG---RPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLL 214 (311)
T ss_pred -CC---CcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEE
Confidence 01 11256786 777764433 33676777654 111111 110111112234445677 466666 56788889
Q ss_pred ECCCCcEEEEEecCCC-CCceeeEEEeeCCeEEE-EEcCCeEEEEcCC-CCEEE
Q 006913 255 DTSSGNILWHKSVGPL-GSAEYAPVVDSNGWISV-GSLDGLLYSFSPS-GVLNK 305 (626)
Q Consensus 255 D~~tG~~~w~~~~~~l-~~~~sspvvD~dG~IWV-GT~~gGLy~~d~~-g~~~~ 305 (626)
|.-+|.....+...+. +....+....+++...+ |..+|.|+.++.. |....
T Consensus 215 DAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 215 DAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred EccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 9999997765533321 11222334445666554 5566899999864 55443
No 47
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=94.83 E-value=1.8 Score=48.90 Aligned_cols=150 Identities=17% Similarity=0.235 Sum_probs=83.9
Q ss_pred CCeEEEEEc-----CCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeC
Q 006913 139 SSSVYINVK-----GRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSA 213 (626)
Q Consensus 139 dG~LwIgT~-----~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~ 213 (626)
.+.|++.+. ....+++|.+|.++|.... . . . .......-+ +|.++++.. ..++.+|.
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~-----~--~----~-----~~~~~~~l~-nG~ll~~~~-~~~~e~D~ 174 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPL-----D--S----G-----SDNSFKQLP-NGNLLIGSG-NRLYEIDL 174 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEETTS-EEEEE-G-----G--G----T-------SSEEE-T-TS-EEEEEB-TEEEEE-T
T ss_pred CCcEEEEeCCCCCCCceEEEECCCccEEEEEcc-----C--c----c-----ccceeeEcC-CCCEEEecC-CceEEEcC
Confidence 344555444 4678999999999998611 0 0 0 001122333 889988876 67999999
Q ss_pred CCCeEEEEEcCCCC--CcceeeeeecCCeEEEEEc-------------CCCEEEEEECCCCcEEEEEecC----C--C--
Q 006913 214 HSPYFNWIQDLSSF--DKAFTLTPGNNGYLYVTIP-------------VRALVLALDTSSGNILWHKSVG----P--L-- 270 (626)
Q Consensus 214 ~tg~~~w~~~~~s~--~~v~sI~~D~dG~LwVGT~-------------~gG~l~alD~~tG~~~w~~~~~----~--l-- 270 (626)
-+ ++.|.+..+.. .....+.+..+|++.+-.. ....++.+| .+|++.|..... + .
T Consensus 175 ~G-~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~ 252 (477)
T PF05935_consen 175 LG-KVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTV 252 (477)
T ss_dssp T---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TT
T ss_pred CC-CEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccc
Confidence 76 78887765541 1223456677876555432 124688899 899999874221 0 0
Q ss_pred -------------C----CceeeEEEee-CCeEEEEEcCC-eEEEEc-CCCCEEEEee
Q 006913 271 -------------G----SAEYAPVVDS-NGWISVGSLDG-LLYSFS-PSGVLNKFSK 308 (626)
Q Consensus 271 -------------~----~~~sspvvD~-dG~IWVGT~~g-GLy~~d-~~g~~~~~~~ 308 (626)
. -...++..++ ++.|.+..... .|+.+| .++++.|..-
T Consensus 253 ~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 253 LKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp GGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred cccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 0 0245677776 78999999765 999999 5688999754
No 48
>PRK13684 Ycf48-like protein; Provisional
Probab=94.83 E-value=6.9 Score=41.99 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=57.2
Q ss_pred eEEEcCCCeEEEEcCCCeEEEE-eCCCCeEEEEEc-CCC---CCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEE
Q 006913 190 PVIDQCEGSIYISNTQGELYSL-SAHSPYFNWIQD-LSS---FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWH 264 (626)
Q Consensus 190 pviD~~dG~LwIGT~~GgL~~l-d~~tg~~~w~~~-~~s---~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~ 264 (626)
+.... ++.+|+....| ...+ ..++| ..|... .+. ...+.+++...++.+|++.. .|.++.- .++-..|+
T Consensus 220 i~~~~-~g~~~~vg~~G-~~~~~s~d~G-~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-~G~v~~S--~d~G~tW~ 293 (334)
T PRK13684 220 MGFQP-DGNLWMLARGG-QIRFNDPDDL-ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG-NGTLLVS--KDGGKTWE 293 (334)
T ss_pred eeEcC-CCCEEEEecCC-EEEEccCCCC-CccccccCCccccccceeeEEEcCCCCEEEEcC-CCeEEEe--CCCCCCCe
Confidence 34443 77888775554 5555 34554 457632 121 11244556666888999875 4555432 24445676
Q ss_pred Eec--CCCCCceeeEEEeeCCeEEEEEcCCeEEEEcC
Q 006913 265 KSV--GPLGSAEYAPVVDSNGWISVGSLDGLLYSFSP 299 (626)
Q Consensus 265 ~~~--~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~ 299 (626)
... .........++...++..|+....|-|..++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 294 KDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred ECCcCCCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 432 11111234455555788888887777766654
No 49
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=94.73 E-value=0.072 Score=38.20 Aligned_cols=29 Identities=28% Similarity=0.587 Sum_probs=26.2
Q ss_pred CeEEEEcCCCeEEEEeCCCCeEEEEEcCC
Q 006913 197 GSIYISNTQGELYSLSAHSPYFNWIQDLS 225 (626)
Q Consensus 197 G~LwIGT~~GgL~~ld~~tg~~~w~~~~~ 225 (626)
|.||+++.+|.|+++|.++|++.|.....
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 57999999999999999999999997754
No 50
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=94.57 E-value=11 Score=43.27 Aligned_cols=194 Identities=15% Similarity=0.149 Sum_probs=108.7
Q ss_pred ccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-
Q 006913 80 GTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH- 157 (626)
Q Consensus 80 ~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~- 157 (626)
+.+++....|+|+=.. ++.|.-+|+.+.+ ..+.+.. ..+.+.+....+.+..+-||.++|-|+.++..
T Consensus 72 IE~L~W~e~~RLFS~g~sg~i~EwDl~~lk-----~~~~~d~-----~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p 141 (691)
T KOG2048|consen 72 IESLAWAEGGRLFSSGLSGSITEWDLHTLK-----QKYNIDS-----NGGAIWSIAINPENTILAIGCDDGVLYDFSIGP 141 (691)
T ss_pred eeeEEEccCCeEEeecCCceEEEEecccCc-----eeEEecC-----CCcceeEEEeCCccceEEeecCCceEEEEecCC
Confidence 4455555567776544 6777778877753 2333221 11233333444666677888777656666654
Q ss_pred CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCe-EEEEcCCCeEEEEeCCCCeEEEEEcC--CCC-----Cc
Q 006913 158 GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS-IYISNTQGELYSLSAHSPYFNWIQDL--SSF-----DK 229 (626)
Q Consensus 158 G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~-LwIGT~~GgL~~ld~~tg~~~w~~~~--~s~-----~~ 229 (626)
+++.... .++ ++ . . -..++.-++ ++. |..|+.+|-|.+.|...++.....+. ... ..
T Consensus 142 ~~I~~~r-----~l~-rq---~----s-RvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~i 206 (691)
T KOG2048|consen 142 DKITYKR-----SLM-RQ---K----S-RVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTI 206 (691)
T ss_pred ceEEEEe-----ecc-cc---c----c-eEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceE
Confidence 6665432 111 11 0 0 012233343 455 88888887788999998877653221 111 12
Q ss_pred ceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeC-CeEEEEEcCCeEEEEcCCC
Q 006913 230 AFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSN-GWISVGSLDGLLYSFSPSG 301 (626)
Q Consensus 230 v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~d-G~IWVGT~~gGLy~~d~~g 301 (626)
+.++..-.++.|--|.. .|.+...|...|+.......- ...+.+++++.+ +.+++++.++.++.|..++
T Consensus 207 VWSv~~Lrd~tI~sgDS-~G~V~FWd~~~gTLiqS~~~h--~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 207 VWSVLFLRDSTIASGDS-AGTVTFWDSIFGTLIQSHSCH--DADVLALAVADNEDRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred EEEEEEeecCcEEEecC-CceEEEEcccCcchhhhhhhh--hcceeEEEEcCCCCeEEEccCCCceEEEEecC
Confidence 34444456777777764 456666676666554222111 112344655544 7899999999999998653
No 51
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=94.54 E-value=0.087 Score=36.03 Aligned_cols=27 Identities=33% Similarity=0.784 Sum_probs=24.9
Q ss_pred CCeEEEEcCCCeEEEEeCCCCeEEEEE
Q 006913 196 EGSIYISNTQGELYSLSAHSPYFNWIQ 222 (626)
Q Consensus 196 dG~LwIGT~~GgL~~ld~~tg~~~w~~ 222 (626)
++.+|+++.+|.|+++|.++|+..|..
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 678999999999999999999999974
No 52
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.44 E-value=8.4 Score=41.27 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=38.1
Q ss_pred cCCeEEEEEcCCCEEEEEECCCCcEEE-EEe-cCCCCCceeeEEEeeCCeEEEEEc-CCeEEE
Q 006913 237 NNGYLYVTIPVRALVLALDTSSGNILW-HKS-VGPLGSAEYAPVVDSNGWISVGSL-DGLLYS 296 (626)
Q Consensus 237 ~dG~LwVGT~~gG~l~alD~~tG~~~w-~~~-~~~l~~~~sspvvD~dG~IWVGT~-~gGLy~ 296 (626)
-+|.++++...++.|+.+...++.... ... ..........+.+++||.|||.+. +|.||+
T Consensus 269 ~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 269 YRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp GTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred ccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEeC
Confidence 377899998777788888765443332 222 222222355678889999999986 566664
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.43 E-value=6.5 Score=39.98 Aligned_cols=177 Identities=12% Similarity=0.028 Sum_probs=98.0
Q ss_pred CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEE-EcCCeEEEEEcCCeEEEEeCC-C--cEEEEECCccccc
Q 006913 96 ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVS-TSSSSVYINVKGRALFAFMTH-G--QLLWSAGPVLDQL 171 (626)
Q Consensus 96 ~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~-d~dG~LwIgT~~gGL~a~d~~-G--~~~w~~~~~~~~~ 171 (626)
+..++..|.++++ +...+. .+.+ .++.+-. ....-+.-|+.+..+-++|-. . +++-.+ +.
T Consensus 80 Dk~v~vwDV~TGk-----v~Rr~r-----gH~a-qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil----de- 143 (307)
T KOG0316|consen 80 DKAVQVWDVNTGK-----VDRRFR-----GHLA-QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL----DE- 143 (307)
T ss_pred CceEEEEEcccCe-----eeeecc-----cccc-eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh----hh-
Confidence 5678888988874 122221 1222 3333322 233334556777777777743 1 111110 00
Q ss_pred ccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEE
Q 006913 172 GYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALV 251 (626)
Q Consensus 172 ~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l 251 (626)
..+. .+++.+. +..|..|+.+|.+..||.+-|.+.--+- ...+.++...+||+--++..-++.+
T Consensus 144 ----------a~D~-V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc~La~~l~stl 207 (307)
T KOG0316|consen 144 ----------AKDG-VSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNCSLASSLDSTL 207 (307)
T ss_pred ----------hcCc-eeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCCEEEEeecccee
Confidence 0011 2344443 5678888889999999998886543211 1234566666777544443345688
Q ss_pred EEEECCCCcEEEEEecCCCCCc--eeeEEEeeCCeEEEEEcCCeEEEEcC-CCCEEE
Q 006913 252 LALDTSSGNILWHKSVGPLGSA--EYAPVVDSNGWISVGSLDGLLYSFSP-SGVLNK 305 (626)
Q Consensus 252 ~alD~~tG~~~w~~~~~~l~~~--~sspvvD~dG~IWVGT~~gGLy~~d~-~g~~~~ 305 (626)
-.+|..||+++-.+.-....++ .+ .+..++-++.-|+.+|.+|.+|. ++.+..
T Consensus 208 rLlDk~tGklL~sYkGhkn~eykldc-~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 208 RLLDKETGKLLKSYKGHKNMEYKLDC-CLNQSDTHVFSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred eecccchhHHHHHhcccccceeeeee-eecccceeEEeccCCceEEEEEeccceeee
Confidence 8899999988643321110111 22 23344678888999999999996 344443
No 54
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.32 E-value=5.2 Score=41.52 Aligned_cols=100 Identities=13% Similarity=0.024 Sum_probs=67.1
Q ss_pred CCeEEEEcCC---CeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCC
Q 006913 196 EGSIYISNTQ---GELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGS 272 (626)
Q Consensus 196 dG~LwIGT~~---GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~ 272 (626)
+|.||.+|.. ..|..+|.++|++....+.+....--.++. .+++||.-|...+..+.+|+.+-+..-++.... .
T Consensus 55 ~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~-~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~--E 131 (264)
T PF05096_consen 55 DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITI-LGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPG--E 131 (264)
T ss_dssp TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEE-ETTEEEEEESSSSEEEEEETTTTEEEEEEE-SS--S
T ss_pred CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEE-ECCEEEEEEecCCeEEEEccccceEEEEEecCC--c
Confidence 7999999863 358899999999887766553111112333 367999999988899999998877765544431 1
Q ss_pred ceeeEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913 273 AEYAPVVDSNGWISVGSLDGLLYSFSPS 300 (626)
Q Consensus 273 ~~sspvvD~dG~IWVGT~~gGLy~~d~~ 300 (626)
-. .++.| +..+|+......|+.+||.
T Consensus 132 GW-GLt~d-g~~Li~SDGS~~L~~~dP~ 157 (264)
T PF05096_consen 132 GW-GLTSD-GKRLIMSDGSSRLYFLDPE 157 (264)
T ss_dssp ---EEEEC-SSCEEEE-SSSEEEEE-TT
T ss_pred ce-EEEcC-CCEEEEECCccceEEECCc
Confidence 12 24455 5678888777899999985
No 55
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.02 E-value=2.5 Score=46.45 Aligned_cols=138 Identities=9% Similarity=-0.009 Sum_probs=83.3
Q ss_pred eEEEEcCCCeEEEEeCCCCeEEEEEcCCCCC--cceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecCCCCCce
Q 006913 198 SIYISNTQGELYSLSAHSPYFNWIQDLSSFD--KAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVGPLGSAE 274 (626)
Q Consensus 198 ~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~--~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~ 274 (626)
.|+.++...-+|.||..+.++.-..+..+.. .+..+.+..++. |-+.. ..|.|+.+-.+|+..+....+++ .+
T Consensus 272 ~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-~~G~I~lLhakT~eli~s~KieG---~v 347 (514)
T KOG2055|consen 272 VIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-NNGHIHLLHAKTKELITSFKIEG---VV 347 (514)
T ss_pred EEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc-cCceEEeehhhhhhhhheeeecc---EE
Confidence 5777777788999999998876554433211 223334445554 33333 35788888888887766555542 34
Q ss_pred eeEEEeeCC-eEEEEEcCCeEEEEcCCCC-EEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCeeEEe
Q 006913 275 YAPVVDSNG-WISVGSLDGLLYSFSPSGV-LNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSL 347 (626)
Q Consensus 275 sspvvD~dG-~IWVGT~~gGLy~~d~~g~-~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~~ 347 (626)
+....++++ .||+....|-||.+|-... ...... +.+. . .-.+++...+|. |+++++..|.++.+
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~--D~G~--v---~gts~~~S~ng~-ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV--DDGS--V---HGTSLCISLNGS-YLATGSDSGIVNIY 414 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe--ecCc--c---ceeeeeecCCCc-eEEeccCcceEEEe
Confidence 555565565 5777777789999997533 222111 1222 1 113456566777 67898887777654
No 56
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.76 E-value=3 Score=45.84 Aligned_cols=188 Identities=14% Similarity=0.108 Sum_probs=101.5
Q ss_pred eCCEEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCC-----ccccceeE
Q 006913 46 EDGKIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKI-----GTSESATQ 115 (626)
Q Consensus 46 ~dG~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~-----~~~~~~~~ 115 (626)
..|...+++ .+.||.... +|.++...... ...+..+....||.+++.. ++.|.......- .. .++..
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH--YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~-~~~p~ 167 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAH--YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH-SVKPL 167 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccHHHHHHhh--ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC-Cccce
Confidence 566655544 567888887 78764211111 1224455566778777754 666666543210 00 00001
Q ss_pred EEecCCCCCCCCCCeeEEEEEE---cCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceE
Q 006913 116 VFYGTGSGKGGTGAIAGIAVST---SSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPV 191 (626)
Q Consensus 116 ~~~~~~~~~~~~~~~I~s~~~d---~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspv 191 (626)
.. +..+ .-.|..+.+. .+.+||-++.++-+-++|.. |.++..+ .++. ...+.+
T Consensus 168 ~~-----f~~H-tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-----~fp~------------si~av~ 224 (476)
T KOG0646|consen 168 HI-----FSDH-TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-----TFPS------------SIKAVA 224 (476)
T ss_pred ee-----eccC-cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-----ecCC------------cceeEE
Confidence 11 1111 1123333333 34578888888878888865 7766553 1121 124567
Q ss_pred EEcCCCeEEEEcCCCeEEEEeCCCCe--EE----EEEc---------CCCCC--cceeeeeecCCeEEEEEcCCCEEEEE
Q 006913 192 IDQCEGSIYISNTQGELYSLSAHSPY--FN----WIQD---------LSSFD--KAFTLTPGNNGYLYVTIPVRALVLAL 254 (626)
Q Consensus 192 iD~~dG~LwIGT~~GgL~~ld~~tg~--~~----w~~~---------~~s~~--~v~sI~~D~dG~LwVGT~~gG~l~al 254 (626)
+|+.+-.+|||+.+|.|+..+..+-. .. -..+ .+..+ .+.++++..||++.+.....|.+...
T Consensus 225 lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 225 LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVW 304 (476)
T ss_pred EcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEE
Confidence 88767789999999988876654322 00 0000 01112 46778888889887766555555555
Q ss_pred ECCCC
Q 006913 255 DTSSG 259 (626)
Q Consensus 255 D~~tG 259 (626)
|..+.
T Consensus 305 di~S~ 309 (476)
T KOG0646|consen 305 DIYSK 309 (476)
T ss_pred ecchH
Confidence 64443
No 57
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=93.51 E-value=12 Score=39.68 Aligned_cols=199 Identities=10% Similarity=0.179 Sum_probs=104.4
Q ss_pred cEEEEcCCCCEEEEEeCCC---------C-CCcccCeEEecCCeEEEE--------------------ECCeEEEEECCC
Q 006913 57 TLFAFESNGTIAWSLDLDF---------T-CNIGTAPVHGGTGEVYIV--------------------AENRVLKVDLLK 106 (626)
Q Consensus 57 gL~a~d~~G~~~W~~~~~~---------~-~~i~~sp~iD~dG~IwVg--------------------T~ggL~~id~~~ 106 (626)
.++.+|.+.+.+|.+.... . ..-.+...+..+|++|+. -++.++.+|+++
T Consensus 26 ~~~~lD~~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~T 105 (299)
T PF14269_consen 26 SYVILDSSYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIET 105 (299)
T ss_pred eEEEECCCCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCC
Confidence 4788888888888776543 1 011334455677887771 144677788887
Q ss_pred Cccc--cceeEEEecCCCCC---------------CCCCCeeEEEEEEcCCeEEEEEcC-CeEEEEeC-CCcEEEEECCc
Q 006913 107 IGTS--ESATQVFYGTGSGK---------------GGTGAIAGIAVSTSSSSVYINVKG-RALFAFMT-HGQLLWSAGPV 167 (626)
Q Consensus 107 ~~~~--~~~~~~~~~~~~~~---------------~~~~~~I~s~~~d~dG~LwIgT~~-gGL~a~d~-~G~~~w~~~~~ 167 (626)
++.. |.+... +...... ...---+.++..+.+|.+.|.... .-|+++++ +|+++|..+..
T Consensus 106 gevlfeW~a~DH-~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 106 GEVLFEWSASDH-VDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred CCEEEEEEhhhe-ecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 6531 111000 0000000 000012445566778888887654 77999996 59999987442
Q ss_pred -ccccccc---cccccCCCCCccccceEE---EcCCCeEEEEc-----------CCCeEEEEeCCCCeEEEEEcCC----
Q 006913 168 -LDQLGYR---QGCTKTDVDCYFTSVPVI---DQCEGSIYISN-----------TQGELYSLSAHSPYFNWIQDLS---- 225 (626)
Q Consensus 168 -~~~~~~~---~~~~~~l~~~~i~sspvi---D~~dG~LwIGT-----------~~GgL~~ld~~tg~~~w~~~~~---- 225 (626)
...+... ..-++. +-.+ +. ++.|-+-. ..+-++.+|+.+....+.....
T Consensus 185 ~~~df~~~~~~f~~QHd--------ar~~~~~~~-~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~ 255 (299)
T PF14269_consen 185 RNSDFTLPATNFSWQHD--------ARFLNESND-DGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPD 255 (299)
T ss_pred CCCcccccCCcEeeccC--------CEEeccCCC-CCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCC
Confidence 1111100 000000 0001 00 22222211 2456888999987666554321
Q ss_pred CC--CcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEe
Q 006913 226 SF--DKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKS 266 (626)
Q Consensus 226 s~--~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~ 266 (626)
.. .....+-.-.+|++.|+-...+.+.-++ .+|+++|...
T Consensus 256 ~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~-~~G~vv~~~~ 297 (299)
T PF14269_consen 256 GFYSPSQGSAQRLPNGNVLIGWGNNGRISEFT-PDGEVVWEAQ 297 (299)
T ss_pred cccccCCCcceECCCCCEEEecCCCceEEEEC-CCCCEEEEEE
Confidence 11 0111223345789999865567788887 5788888754
No 58
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=93.40 E-value=0.18 Score=36.18 Aligned_cols=29 Identities=34% Similarity=0.717 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCEEEEEECCCCcEEEEEecC
Q 006913 239 GYLYVTIPVRALVLALDTSSGNILWHKSVG 268 (626)
Q Consensus 239 G~LwVGT~~gG~l~alD~~tG~~~w~~~~~ 268 (626)
|.+|+++ ..|.++++|..||+.+|.+..+
T Consensus 1 ~~v~~~~-~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 1 GRVYVGT-PDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TEEEEET-TTSEEEEEETTTTSEEEEEESS
T ss_pred CEEEEeC-CCCEEEEEECCCCCEEEeeeCC
Confidence 5789996 4689999999999999998776
No 59
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.39 E-value=3.6 Score=44.63 Aligned_cols=136 Identities=15% Similarity=0.210 Sum_probs=70.3
Q ss_pred ceEEEcCCCeEEEEcC------------CC-eEEEEeCCC--CeEE-EEEcCCCCCcceeeeeecCCeEEEEEcCCCEEE
Q 006913 189 VPVIDQCEGSIYISNT------------QG-ELYSLSAHS--PYFN-WIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVL 252 (626)
Q Consensus 189 spviD~~dG~LwIGT~------------~G-gL~~ld~~t--g~~~-w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~ 252 (626)
.++.|. +|+|||+.. .+ .|++++..+ |+.. +..-.........++...+| |||+.. ..++
T Consensus 18 ~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~--~~i~ 93 (367)
T TIGR02604 18 AVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATP--PDIL 93 (367)
T ss_pred eeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCC--CeEE
Confidence 356675 889999853 12 577775432 2321 21111112233456666678 999763 3566
Q ss_pred EEECCCC------cEE-EEEecCCC----CCceeeEEEeeCCeEEEEEc--------------------CCeEEEEcCCC
Q 006913 253 ALDTSSG------NIL-WHKSVGPL----GSAEYAPVVDSNGWISVGSL--------------------DGLLYSFSPSG 301 (626)
Q Consensus 253 alD~~tG------~~~-w~~~~~~l----~~~~sspvvD~dG~IWVGT~--------------------~gGLy~~d~~g 301 (626)
.+.-.++ +.. .....+.. ......+..++||+||++.. .++++++++++
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 5632222 211 11111110 11244677888999999543 15788998875
Q ss_pred CEEEEeeccCCCCccccCceEEEEEEecCCcEEEE
Q 006913 302 VLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAIL 336 (626)
Q Consensus 302 ~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~ 336 (626)
....... .+ +-+ .+.+..+.+|++|+.
T Consensus 174 ~~~e~~a----~G--~rn--p~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 174 GKLRVVA----HG--FQN--PYGHSVDSWGDVFFC 200 (367)
T ss_pred CeEEEEe----cC--cCC--CccceECCCCCEEEE
Confidence 4332221 11 111 124566788999843
No 60
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=93.28 E-value=0.17 Score=34.55 Aligned_cols=29 Identities=34% Similarity=0.807 Sum_probs=24.3
Q ss_pred EEeeCCEEEEEe-CCcEEEEcC-CCCEEEEE
Q 006913 43 LIGEDGKIYACS-EKTLFAFES-NGTIAWSL 71 (626)
Q Consensus 43 vid~dG~IwIgS-dggL~a~d~-~G~~~W~~ 71 (626)
++..+|.+|+++ ++.|+++|. +|+.+|.+
T Consensus 2 ~~~~~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 2 VVLSDGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred cEEECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 444678999988 678999998 99999975
No 61
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=93.26 E-value=0.11 Score=33.57 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=15.7
Q ss_pred CceeeEEEeeCCeEEEEEcC
Q 006913 272 SAEYAPVVDSNGWISVGSLD 291 (626)
Q Consensus 272 ~~~sspvvD~dG~IWVGT~~ 291 (626)
..+.++++|++|+|||||.+
T Consensus 5 n~I~~i~~D~~G~lWigT~~ 24 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIGTYN 24 (24)
T ss_dssp SCEEEEEE-TTSCEEEEETS
T ss_pred CeEEEEEEcCCcCEEEEeCC
Confidence 34677999999999999963
No 62
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=93.25 E-value=7.5 Score=42.13 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=27.5
Q ss_pred CCCeeEEEEEEcCCeEEEEEcCCeEEEEeCCCcE
Q 006913 127 TGAIAGIAVSTSSSSVYINVKGRALFAFMTHGQL 160 (626)
Q Consensus 127 ~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~G~~ 160 (626)
.+...+.......|.|||+...-||+.+++.|+.
T Consensus 114 CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~ 147 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGL 147 (376)
T ss_pred cCCcceEEeccCCCeEEEEecceeeEEECCCCCc
Confidence 3566777777778899999888999999998654
No 63
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=93.08 E-value=21 Score=41.23 Aligned_cols=191 Identities=12% Similarity=0.104 Sum_probs=112.2
Q ss_pred CCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEEC
Q 006913 88 TGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAG 165 (626)
Q Consensus 88 dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~ 165 (626)
.+.+-++- ++.|-.+++.++.+ ...+..+ .....|..++=..+++|+-...++.|.-+|.. ++.+..++
T Consensus 37 S~~lAvsRt~g~IEiwN~~~~w~---~~~vi~g------~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d 107 (691)
T KOG2048|consen 37 SNQLAVSRTDGNIEIWNLSNNWF---LEPVIHG------PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNID 107 (691)
T ss_pred CCceeeeccCCcEEEEccCCCce---eeEEEec------CCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEec
Confidence 34455553 67777778876422 1112222 12234444444467888876666777788874 76655431
Q ss_pred CcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-CCcceeeeeecCCe-EEE
Q 006913 166 PVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS-FDKAFTLTPGNNGY-LYV 243 (626)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-~~~v~sI~~D~dG~-LwV 243 (626)
. .+..+ .++++.+.+..+-||..+|-++.++...+.+.....+.- -..+.++.-+.+|. |..
T Consensus 108 ~---------------~gg~I-Wsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~ 171 (691)
T KOG2048|consen 108 S---------------NGGAI-WSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG 171 (691)
T ss_pred C---------------CCcce-eEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe
Confidence 1 01122 344543336678899889888888888887776654432 13466666666776 777
Q ss_pred EEcCCCEEEEEECCCCcEEEEE--ecCCCCC----ceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEE
Q 006913 244 TIPVRALVLALDTSSGNILWHK--SVGPLGS----AEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLN 304 (626)
Q Consensus 244 GT~~gG~l~alD~~tG~~~w~~--~~~~l~~----~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~ 304 (626)
|+. +|.+-+.|.++|...... ....++. .+-+...-+++.|--|...|.|-.+|+. |.+.
T Consensus 172 Gs~-Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 172 GSI-DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred ccc-CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchh
Confidence 774 567888999888876521 2222221 2233444467888888766677677764 5443
No 64
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=93.07 E-value=15 Score=39.76 Aligned_cols=232 Identities=12% Similarity=0.070 Sum_probs=115.8
Q ss_pred CCEEEEEeC-----------CcEEEEcC-CCCEEEEEeCCCC-----CCcccCeEEecCCe-EEEEE---CCeEEEEECC
Q 006913 47 DGKIYACSE-----------KTLFAFES-NGTIAWSLDLDFT-----CNIGTAPVHGGTGE-VYIVA---ENRVLKVDLL 105 (626)
Q Consensus 47 dG~IwIgSd-----------ggL~a~d~-~G~~~W~~~~~~~-----~~i~~sp~iD~dG~-IwVgT---~ggL~~id~~ 105 (626)
...||++.. +.+-.+|. +++....+..+.. ........+..+|+ +|+.. ++.|..+|..
T Consensus 57 g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~ 136 (352)
T TIGR02658 57 GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE 136 (352)
T ss_pred CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECC
Confidence 447898754 57889998 8888766665432 01112344566775 77764 5789999988
Q ss_pred CCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEE--EeCCCcEEEEECCcccccccccccccCCCC
Q 006913 106 KIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFA--FMTHGQLLWSAGPVLDQLGYRQGCTKTDVD 183 (626)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a--~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~ 183 (626)
.++. .-...- ..+. ...+...+++...+ .++.+.. ++.+|+..-.... + +. . ..
T Consensus 137 ~~kv-----v~ei~v-----p~~~--~vy~t~e~~~~~~~-~Dg~~~~v~~d~~g~~~~~~~~-v--f~-------~-~~ 192 (352)
T TIGR02658 137 GKAF-----VRMMDV-----PDCY--HIFPTANDTFFMHC-RDGSLAKVGYGTKGNPKIKPTE-V--FH-------P-ED 192 (352)
T ss_pred CCcE-----EEEEeC-----CCCc--EEEEecCCccEEEe-ecCceEEEEecCCCceEEeeee-e--ec-------C-Cc
Confidence 7642 111110 0011 11111222222222 2333333 3344553321100 0 00 0 00
Q ss_pred CccccceEEEc-CCCeEEEEcCCCeEEEEeCCCCeEE----EEE-cCC----CC--Ccceeeeeec-CCeEEEEEc----
Q 006913 184 CYFTSVPVIDQ-CEGSIYISNTQGELYSLSAHSPYFN----WIQ-DLS----SF--DKAFTLTPGN-NGYLYVTIP---- 246 (626)
Q Consensus 184 ~~i~sspviD~-~dG~LwIGT~~GgL~~ld~~tg~~~----w~~-~~~----s~--~~v~sI~~D~-dG~LwVGT~---- 246 (626)
..+...|.+.. .+..+|+.. .|.|+.+|..+.... |.. ... .. .....++... .+++||...
T Consensus 193 ~~v~~rP~~~~~dg~~~~vs~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~ 271 (352)
T TIGR02658 193 EYLINHPAYSNKSGRLVWPTY-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAK 271 (352)
T ss_pred cccccCCceEcCCCcEEEEec-CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcc
Confidence 11223342111 155566764 589999995443322 321 111 00 0111245554 458999642
Q ss_pred -----CCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCe--EEEEEc-CCeEEEEcCC-CCEEEE
Q 006913 247 -----VRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGW--ISVGSL-DGLLYSFSPS-GVLNKF 306 (626)
Q Consensus 247 -----~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~--IWVGT~-~gGLy~~d~~-g~~~~~ 306 (626)
.+..+..+|..+++..-....+. ....+.+.+||. +|+... ++.|..+|.. ++....
T Consensus 272 ~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred ccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 22478899999998877665542 233466766665 555543 3559999964 555443
No 65
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=92.54 E-value=20 Score=39.82 Aligned_cols=103 Identities=13% Similarity=0.079 Sum_probs=55.5
Q ss_pred CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCcee
Q 006913 196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEY 275 (626)
Q Consensus 196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~s 275 (626)
+|..+.--..|..+.+++..+...-....+.... ..+..+.+ .+.+|+.++..+-.+|..+|+.... ..+++++ -
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY-~r~~~~~e-~~vigt~dgD~l~iyd~~~~e~kr~--e~~lg~I-~ 405 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRY-RRIQVDPE-GDVIGTNDGDKLGIYDKDGGEVKRI--EKDLGNI-E 405 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEcCCCCceEE-EEEccCCc-ceEEeccCCceEEEEecCCceEEEe--eCCccce-E
Confidence 3444433345667777776654332211111111 12334444 5778887666788888777765422 1223333 3
Q ss_pred eEEEeeCCe-EEEEEcCCeEEEEcCC-CCE
Q 006913 276 APVVDSNGW-ISVGSLDGLLYSFSPS-GVL 303 (626)
Q Consensus 276 spvvD~dG~-IWVGT~~gGLy~~d~~-g~~ 303 (626)
++.++++|. +.++.....|+.+|-+ |+.
T Consensus 406 av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred EEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 356666766 6666666677777753 544
No 66
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.47 E-value=20 Score=39.56 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=69.1
Q ss_pred CCeEEEEcCCCeEEEEeCCCCeEEEEEc-CCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcE----EEEE-ecCC
Q 006913 196 EGSIYISNTQGELYSLSAHSPYFNWIQD-LSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNI----LWHK-SVGP 269 (626)
Q Consensus 196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~-~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~----~w~~-~~~~ 269 (626)
++.+++....|.++.-. +.|.-.|... .+....+..+....+|.+|+++. +|.++.-+ ..|.. .|.. ..+.
T Consensus 249 dG~~~~vg~~G~~~~s~-d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~-~G~l~~S~-d~G~~~~~~~f~~~~~~~ 325 (398)
T PLN00033 249 DGDYVAVSSRGNFYLTW-EPGQPYWQPHNRASARRIQNMGWRADGGLWLLTR-GGGLYVSK-GTGLTEEDFDFEEADIKS 325 (398)
T ss_pred CCCEEEEECCccEEEec-CCCCcceEEecCCCccceeeeeEcCCCCEEEEeC-CceEEEec-CCCCcccccceeecccCC
Confidence 56666655566555443 3445446532 22222345566677899999985 45555433 34431 1221 1111
Q ss_pred CCCceeeEEEeeCCeEEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEE
Q 006913 270 LGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAI 335 (626)
Q Consensus 270 l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI 335 (626)
....+.++...+++.+|+....|.++.-...|+. |..... .+. ....++.++...++..|+
T Consensus 326 ~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~t-W~~~~~-~~~---~~~~ly~v~f~~~~~g~~ 386 (398)
T PLN00033 326 RGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKS-WKRDKG-ADN---IAANLYSVKFFDDKKGFV 386 (398)
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcc-eeEccc-cCC---CCcceeEEEEcCCCceEE
Confidence 1112445666668999999977666665444543 432210 111 122356677666677774
No 67
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=92.29 E-value=23 Score=39.84 Aligned_cols=247 Identities=11% Similarity=0.064 Sum_probs=120.1
Q ss_pred ccCCCccccccCCceeeeeEEe----eCCEEEEEe--CCcEEEEcC-CCCEEEEEeCCCC-CCcccCeEEecCCeEEEE-
Q 006913 24 FSSSAKVPYRRSAFRLSKPLIG----EDGKIYACS--EKTLFAFES-NGTIAWSLDLDFT-CNIGTAPVHGGTGEVYIV- 94 (626)
Q Consensus 24 ~~~~~~~~~~~~~~~~Sspvid----~dG~IwIgS--dggL~a~d~-~G~~~W~~~~~~~-~~i~~sp~iD~dG~IwVg- 94 (626)
|-++++.-++.+.+-++.-+-+ +||..++.+ ++.++.||- +|+..-.+.-... ..-+.++....|+.=++.
T Consensus 174 ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~ 253 (603)
T KOG0318|consen 174 FFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTV 253 (603)
T ss_pred EeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEe
Confidence 3455555555555555554333 578888854 788999997 8887644431110 011222222233332222
Q ss_pred E-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccc
Q 006913 95 A-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLG 172 (626)
Q Consensus 95 T-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~ 172 (626)
+ +..+-..|..++.. ...|..+.. .....++++.. ++.|...+.++-|..+++. +...... .+
T Consensus 254 SaDkt~KIWdVs~~sl---v~t~~~~~~----v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i------~G 318 (603)
T KOG0318|consen 254 SADKTIKIWDVSTNSL---VSTWPMGST----VEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVI------SG 318 (603)
T ss_pred cCCceEEEEEeeccce---EEEeecCCc----hhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhhee------cc
Confidence 2 44444445544321 012222211 11234444333 5566666667778888874 5543221 01
Q ss_pred cccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEE
Q 006913 173 YRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVL 252 (626)
Q Consensus 173 ~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~ 252 (626)
++ ..+ .++.+-+.+..||-|+++|-|...+..+|.---.......+.+..+.....+.|+....+ ..+-
T Consensus 319 ------Hn---K~I-TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D-d~l~ 387 (603)
T KOG0318|consen 319 ------HN---KSI-TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD-DTLR 387 (603)
T ss_pred ------cc---cce-eEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC-CeEE
Confidence 11 122 334443225679999999988888887764322111111234556666655667766654 3444
Q ss_pred EEECCCCcEEEE--EecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcC
Q 006913 253 ALDTSSGNILWH--KSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSP 299 (626)
Q Consensus 253 alD~~tG~~~w~--~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~ 299 (626)
.++.+.+...-. ..++ .....+++.++|.+-+-+...+|..+..
T Consensus 388 ~~~~~~~~~t~~~~~~lg---~QP~~lav~~d~~~avv~~~~~iv~l~~ 433 (603)
T KOG0318|consen 388 VISLKDNGYTKSEVVKLG---SQPKGLAVLSDGGTAVVACISDIVLLQD 433 (603)
T ss_pred EEecccCcccccceeecC---CCceeEEEcCCCCEEEEEecCcEEEEec
Confidence 444332222111 1222 1223455665654444444566766653
No 68
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=92.18 E-value=20 Score=39.00 Aligned_cols=134 Identities=12% Similarity=0.059 Sum_probs=74.1
Q ss_pred CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC
Q 006913 148 GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS 226 (626)
Q Consensus 148 ~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s 226 (626)
.+.|..+|.. .+.+..+.. + ...+..+...+.+..+|+.+.+|.|..+|..++++.-....+.
T Consensus 15 ~~~v~viD~~t~~~~~~i~~-----~-----------~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~ 78 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPT-----G-----------GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG 78 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE------S-----------TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS
T ss_pred CCEEEEEECCCCeEEEEEcC-----C-----------CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC
Confidence 4678888864 666555411 0 0111222333214569999989999999999998776554433
Q ss_pred CCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCC-----CCceeeEEEeeCCeEEEEE--cCCeEEEEc
Q 006913 227 FDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPL-----GSAEYAPVVDSNGWISVGS--LDGLLYSFS 298 (626)
Q Consensus 227 ~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l-----~~~~sspvvD~dG~IWVGT--~~gGLy~~d 298 (626)
....++...|| .++++....+.+..+|.++.+.+........ ......++....+..||-+ ..+.++.+|
T Consensus 79 --~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 79 --NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp --EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred --CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 23456677777 5777765567888999999888765543310 0113344444455556554 235666666
Q ss_pred C
Q 006913 299 P 299 (626)
Q Consensus 299 ~ 299 (626)
.
T Consensus 157 y 157 (369)
T PF02239_consen 157 Y 157 (369)
T ss_dssp T
T ss_pred e
Confidence 4
No 69
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.31 E-value=5.1 Score=40.79 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=31.5
Q ss_pred eEEEeeCCeEEEEEcCC-eEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEE
Q 006913 276 APVVDSNGWISVGSLDG-LLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLG 327 (626)
Q Consensus 276 spvvD~dG~IWVGT~~g-GLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~ 327 (626)
.+.+|.+|+|||+++++ .++.+|+. |+++.-.. ++.+.|.+++.
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik--------lPt~qitsccF 261 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK--------LPTPQITSCCF 261 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE--------cCCCceEEEEe
Confidence 35678899999999875 68899985 87765443 45566655543
No 70
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=91.28 E-value=5.4 Score=44.37 Aligned_cols=131 Identities=13% Similarity=0.052 Sum_probs=74.0
Q ss_pred CCeE-EEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCc
Q 006913 196 EGSI-YISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSA 273 (626)
Q Consensus 196 dG~L-wIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~ 273 (626)
+.+| +-...+|.|..+|..+. ....+-.+-.+...+|-+..|| +||-|..+ ..+-+.|..+|....+..... .+
T Consensus 520 DakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtklWTGGlD-ntvRcWDlregrqlqqhdF~S--QI 595 (705)
T KOG0639|consen 520 DAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTKLWTGGLD-NTVRCWDLREGRQLQQHDFSS--QI 595 (705)
T ss_pred ccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCceeecCCCc-cceeehhhhhhhhhhhhhhhh--hh
Confidence 3444 44455788999999873 3332221223445677777788 89999864 477788877776553332221 11
Q ss_pred eeeEEEeeCCeEEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEe
Q 006913 274 EYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCL 338 (626)
Q Consensus 274 ~sspvvD~dG~IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~ 338 (626)
++--..-.++++-||..++.+..+...+..+.... +....|.++-...-|.-|+.|+
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~skp~kyqlh--------lheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLH--------LHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCCccceeec--------ccccEEEEEEecccCceeeecC
Confidence 21111112568999999998888887654333211 1122233444455566665554
No 71
>PHA02713 hypothetical protein; Provisional
Probab=91.07 E-value=34 Score=39.41 Aligned_cols=90 Identities=9% Similarity=0.112 Sum_probs=44.6
Q ss_pred eEEEEeCCCCeEEEEEcCCC-CCcceeeeeecCCeEEEEEcCC------CEEEEEECCC-CcEEEEEecC-CCCCceeeE
Q 006913 207 ELYSLSAHSPYFNWIQDLSS-FDKAFTLTPGNNGYLYVTIPVR------ALVLALDTSS-GNILWHKSVG-PLGSAEYAP 277 (626)
Q Consensus 207 gL~~ld~~tg~~~w~~~~~s-~~~v~sI~~D~dG~LwVGT~~g------G~l~alD~~t-G~~~w~~~~~-~l~~~~ssp 277 (626)
.+.+||+.++ .|..-.+. ......-+...+|.|||..... ..+.++|+.+ + .|..-.+ +........
T Consensus 433 ~ve~YDP~td--~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 433 KVIRYDTVNN--IWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELITTTESRLSALHT 508 (557)
T ss_pred eEEEECCCCC--eEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEccccCccccccee
Confidence 3778998875 37632221 1111111223478999864211 1356889876 4 4764222 101111223
Q ss_pred EEeeCCeEEEEE-cCC--eEEEEcCCC
Q 006913 278 VVDSNGWISVGS-LDG--LLYSFSPSG 301 (626)
Q Consensus 278 vvD~dG~IWVGT-~~g--GLy~~d~~g 301 (626)
++- +|.||+-. +++ .+-+||+..
T Consensus 509 ~~~-~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 509 ILH-DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred EEE-CCEEEEEeeecceeehhhcCccc
Confidence 333 78888843 333 366676643
No 72
>PHA02713 hypothetical protein; Provisional
Probab=90.24 E-value=40 Score=38.85 Aligned_cols=183 Identities=9% Similarity=0.074 Sum_probs=87.7
Q ss_pred eCCEEEEEe--C------CcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--C-----CeEEEEECCCCccc
Q 006913 46 EDGKIYACS--E------KTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--E-----NRVLKVDLLKIGTS 110 (626)
Q Consensus 46 ~dG~IwIgS--d------ggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~-----ggL~~id~~~~~~~ 110 (626)
-+|.||+.. + +.+++||+... .|....+-.......-+..-+|.||+.. + ..+.+||+.++
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n-~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~--- 377 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENK-IHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDD--- 377 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCC-eEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCC---
Confidence 578898843 2 23788997322 4643221110111111223468898853 2 24788998875
Q ss_pred cceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEE-cC-----------------------CeEEEEeCCCcEEEEECC
Q 006913 111 ESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINV-KG-----------------------RALFAFMTHGQLLWSAGP 166 (626)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT-~~-----------------------gGL~a~d~~G~~~w~~~~ 166 (626)
.|.....-. ...........+|.||+-. .+ ..+.+|||... .|..-+
T Consensus 378 ----~W~~~~~mp----~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td-~W~~v~ 448 (557)
T PHA02713 378 ----KWKMLPDMP----IALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN-IWETLP 448 (557)
T ss_pred ----eEEECCCCC----cccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC-eEeecC
Confidence 454322111 1111112234578888742 11 23778888633 476411
Q ss_pred cccccccccccccCCCCCccccceEEEcCCCeEEEE-cCC------CeEEEEeCCC-CeEEEEEcCC--CCCcceeeeee
Q 006913 167 VLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYIS-NTQ------GELYSLSAHS-PYFNWIQDLS--SFDKAFTLTPG 236 (626)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIG-T~~------GgL~~ld~~t-g~~~w~~~~~--s~~~v~sI~~D 236 (626)
++.. +. .....+.- +|.||+- ..+ ..+.+||+++ ++ |..-.+ .......++ -
T Consensus 449 ---~m~~----~r------~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~~~~m~~~r~~~~~~-~ 510 (557)
T PHA02713 449 ---NFWT----GT------IRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--WELITTTESRLSALHTI-L 510 (557)
T ss_pred ---CCCc----cc------ccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCC--eeEccccCcccccceeE-E
Confidence 1110 00 01122332 7889874 322 2367899987 43 764322 111111222 2
Q ss_pred cCCeEEEEEcCCC--EEEEEECCCC
Q 006913 237 NNGYLYVTIPVRA--LVLALDTSSG 259 (626)
Q Consensus 237 ~dG~LwVGT~~gG--~l~alD~~tG 259 (626)
.+|.||+.....+ .+-++|+.++
T Consensus 511 ~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 511 HDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred ECCEEEEEeeecceeehhhcCcccc
Confidence 3789998642222 3556776555
No 73
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=89.93 E-value=33 Score=37.35 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=23.0
Q ss_pred CCcccCeEEecCC-eEEEEE-CCeEEEEECCCCc
Q 006913 77 CNIGTAPVHGGTG-EVYIVA-ENRVLKVDLLKIG 108 (626)
Q Consensus 77 ~~i~~sp~iD~dG-~IwVgT-~ggL~~id~~~~~ 108 (626)
|..--.+..+..| ++||+. .-||+.+++.++.
T Consensus 114 CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~ 147 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGL 147 (376)
T ss_pred cCCcceEEeccCCCeEEEEecceeeEEECCCCCc
Confidence 3333345556665 899996 7899999998874
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=89.79 E-value=12 Score=38.34 Aligned_cols=135 Identities=14% Similarity=0.021 Sum_probs=77.6
Q ss_pred CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCcee
Q 006913 196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEY 275 (626)
Q Consensus 196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~s 275 (626)
+..|.-+++++.|...|.++|.......+.+ .+.++-+..+|++...++ ++.+...|+++-..+-.+..+ .++.
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P--~nV~- 228 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMP--CNVE- 228 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEec-CceeEEeccccccceeeccCc--cccc-
Confidence 5566666778889999999988765544332 244455567888877664 567766787666655544433 1222
Q ss_pred eEEEeeCCeEEE-EEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCee
Q 006913 276 APVVDSNGWISV-GSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQF 344 (626)
Q Consensus 276 spvvD~dG~IWV-GT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl 344 (626)
+....++-.+|| |..+..+|.||-. |..+-.+. .+ ..+| |.++-...+|.+| .+++..|-+
T Consensus 229 SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n----kg--h~gp-VhcVrFSPdGE~y-AsGSEDGTi 291 (334)
T KOG0278|consen 229 SASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN----KG--HFGP-VHCVRFSPDGELY-ASGSEDGTI 291 (334)
T ss_pred cccccCCCceEEecCcceEEEEEeccCCceeeecc----cC--CCCc-eEEEEECCCCcee-eccCCCceE
Confidence 222333445555 5567789999964 55433221 01 1222 3455556677776 455444444
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.45 E-value=33 Score=38.16 Aligned_cols=140 Identities=12% Similarity=0.046 Sum_probs=73.0
Q ss_pred CCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeE
Q 006913 139 SSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYF 218 (626)
Q Consensus 139 dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~ 218 (626)
++-+.-|++++-+-.+|..-...|.. .+ .- ++.+ .+.+.-+ .|.+.+...++.+-.+|.-+|..
T Consensus 166 ~hivvtGsYDg~vrl~DtR~~~~~v~-----el--nh-------g~pV-e~vl~lp-sgs~iasAgGn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 166 DHIVVTGSYDGKVRLWDTRSLTSRVV-----EL--NH-------GCPV-ESVLALP-SGSLIASAGGNSVKVWDLTTGGQ 229 (487)
T ss_pred CeEEEecCCCceEEEEEeccCCceeE-----Ee--cC-------CCce-eeEEEcC-CCCEEEEcCCCeEEEEEecCCce
Confidence 33455678887777788642213332 11 11 1222 2223333 55666655555677777774433
Q ss_pred EEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEE-eeCCeEEEEEcCCeEEE
Q 006913 219 NWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVV-DSNGWISVGSLDGLLYS 296 (626)
Q Consensus 219 ~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvv-D~dG~IWVGT~~gGLy~ 296 (626)
.-....+-+..+.|+....++ +|+-|.- ++.+-.+|..+-+.......+ +. +-++.+ +.+.++++|..+|.+..
T Consensus 230 ll~~~~~H~KtVTcL~l~s~~~rLlS~sL-D~~VKVfd~t~~Kvv~s~~~~--~p-vLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 230 LLTSMFNHNKTVTCLRLASDSTRLLSGSL-DRHVKVFDTTNYKVVHSWKYP--GP-VLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ehhhhhcccceEEEEEeecCCceEeeccc-ccceEEEEccceEEEEeeecc--cc-eeeEEecCCCceEEEecccceeee
Confidence 222111113356777666555 6777775 467777884444443322222 11 233444 34568999987776665
Q ss_pred Ec
Q 006913 297 FS 298 (626)
Q Consensus 297 ~d 298 (626)
-.
T Consensus 306 rr 307 (487)
T KOG0310|consen 306 RR 307 (487)
T ss_pred eh
Confidence 53
No 76
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=89.10 E-value=21 Score=38.27 Aligned_cols=137 Identities=19% Similarity=0.274 Sum_probs=68.5
Q ss_pred eEEEEcCC----CeEEEEe--CCCCeEEEEEcCCCCCcceeeeeecC-CeEEEEEcC---CCEEEEE--ECCCCcEEEEE
Q 006913 198 SIYISNTQ----GELYSLS--AHSPYFNWIQDLSSFDKAFTLTPGNN-GYLYVTIPV---RALVLAL--DTSSGNILWHK 265 (626)
Q Consensus 198 ~LwIGT~~----GgL~~ld--~~tg~~~w~~~~~s~~~v~sI~~D~d-G~LwVGT~~---gG~l~al--D~~tG~~~w~~ 265 (626)
++|||++. +||+.+. .+++++.............-++.+.+ +.||+.... .+.+.++ +..+|......
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 47889886 6887664 47777765543221122233455544 479988752 4565554 44346554322
Q ss_pred ecCCCCCceeeEEEeeCC-eEEEEEcC-CeEEEE--cCCCCEEEE---eecc--CCCCccccCceEEEEEEecCCcEE
Q 006913 266 SVGPLGSAEYAPVVDSNG-WISVGSLD-GLLYSF--SPSGVLNKF---SKSD--TSDSVIQSSPYWFHLLGPSIGLKA 334 (626)
Q Consensus 266 ~~~~l~~~~sspvvD~dG-~IWVGT~~-gGLy~~--d~~g~~~~~---~~~~--~~~~~ilssp~V~~Il~DsdG~Iw 334 (626)
.....+...+.+.+++++ .||++.+. +.+..+ +.+|.+... .... ..+......+...++..+.+|+..
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v 158 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV 158 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence 111012234556676555 68888874 445444 444654332 1100 000001234555567777777643
No 77
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=88.95 E-value=39 Score=36.84 Aligned_cols=191 Identities=13% Similarity=0.135 Sum_probs=92.6
Q ss_pred CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCee
Q 006913 55 EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIA 131 (626)
Q Consensus 55 dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I 131 (626)
++.+..+|. +.+....+.... .....+....||+ +|+.. ++.|..+|..+.+.. -.+..+ ....
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~--~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v---~~i~~G--------~~~~ 81 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG--APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV---ATIKVG--------GNPR 81 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST--TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE---EEEE-S--------SEEE
T ss_pred CCEEEEEECCCCeEEEEEcCCC--CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEE---EEEecC--------CCcc
Confidence 467889997 677766665432 1222344456676 78877 789999999886420 011111 1233
Q ss_pred EEEEEEcCCeEEEEEc-CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC--CCe
Q 006913 132 GIAVSTSSSSVYINVK-GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT--QGE 207 (626)
Q Consensus 132 ~s~~~d~dG~LwIgT~-~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~--~Gg 207 (626)
+..+...+..++++.+ .+.+..+|.. .+.+..... ...+ ...... -...++... .+..|+-+. .+.
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~--~~~~------~~~~~~-Rv~aIv~s~-~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT--GGMP------VDGPES-RVAAIVASP-GRPEFVVNLKDTGE 151 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE----EE-------TTTS----EEEEEE-S-SSSEEEEEETTTTE
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeeccc--cccc------ccccCC-CceeEEecC-CCCEEEEEEccCCe
Confidence 3333334445777654 4788899974 665544310 0000 000000 011122222 344454332 356
Q ss_pred EEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecC
Q 006913 208 LYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVG 268 (626)
Q Consensus 208 L~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~ 268 (626)
+..+|....+..................|.+|+ ++++......+..+|.++++.......+
T Consensus 152 I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g 213 (369)
T PF02239_consen 152 IWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG 213 (369)
T ss_dssp EEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S
T ss_pred EEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc
Confidence 666765554332222211112234456777886 4555555567888899998887655443
No 78
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.73 E-value=1.7 Score=44.11 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=40.5
Q ss_pred eeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeC--CeEEEEE
Q 006913 233 LTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSN--GWISVGS 289 (626)
Q Consensus 233 I~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~d--G~IWVGT 289 (626)
+++|.+|+|||+++.++.++.+|+.||+++-...++. ..+++.+.... +.+|+.+
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt--~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT--PQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC--CceEEEEecCCCccEEEEEe
Confidence 5668899999999999999999999999987766552 12444555423 4566665
No 79
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=88.52 E-value=37 Score=36.08 Aligned_cols=268 Identities=13% Similarity=0.096 Sum_probs=119.5
Q ss_pred EEeeCCEEEE--EeCCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEE
Q 006913 43 LIGEDGKIYA--CSEKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVF 117 (626)
Q Consensus 43 vid~dG~IwI--gSdggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~ 117 (626)
-....|.+.+ |++|.+..||. +-.+.. .+......+.+++..++|+..+.+ +..+...|...+.. -..+.
T Consensus 30 ~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar--~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~---l~rir 104 (405)
T KOG1273|consen 30 QFSRWGDYLAVGCANGRVVIYDFDTFRIAR--MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP---LKRIR 104 (405)
T ss_pred EeccCcceeeeeccCCcEEEEEccccchhh--hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc---eeEEE
Confidence 3445676665 34778888886 322211 011111235567777899988865 67777778766531 01122
Q ss_pred ecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcC
Q 006913 118 YGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC 195 (626)
Q Consensus 118 ~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~ 195 (626)
+. ..+.+....+.+.+..+++. ...-+.++-. ++-... +... ...+. ...+..+.|+.
T Consensus 105 f~--------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~L--------p~d~--d~dln--~sas~~~fdr~ 164 (405)
T KOG1273|consen 105 FD--------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVL--------PKDD--DGDLN--SSASHGVFDRR 164 (405)
T ss_pred cc--------CccceeeeccccCCeEEEEEecCCcEEEEecCCceeec--------cCCC--ccccc--cccccccccCC
Confidence 21 12333333444444444432 1112222211 211110 0000 00000 00112245654
Q ss_pred CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEE-EEEcCCCEEEEEECC-------CCcEEEEEec
Q 006913 196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLY-VTIPVRALVLALDTS-------SGNILWHKSV 267 (626)
Q Consensus 196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~Lw-VGT~~gG~l~alD~~-------tG~~~w~~~~ 267 (626)
+..|+.||..|-|..||.++-+........+...+-.|.....|+.. +.+. +..+-.++.+ .|++......
T Consensus 165 g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts-DRvIR~ye~~di~~~~r~~e~e~~~K~ 243 (405)
T KOG1273|consen 165 GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS-DRVIRTYEISDIDDEGRDGEVEPEHKL 243 (405)
T ss_pred CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC-CceEEEEehhhhcccCccCCcChhHHH
Confidence 67789999999999999998665432211111123334444455433 3332 2233223311 1111100000
Q ss_pred CCC-CC-ceeeEEEeeCCeEEEEE--cCCeEEEEcCC-CCEEEEeeccCCCC-----ccccCceEEEEEEecCCcEEEEE
Q 006913 268 GPL-GS-AEYAPVVDSNGWISVGS--LDGLLYSFSPS-GVLNKFSKSDTSDS-----VIQSSPYWFHLLGPSIGLKAILC 337 (626)
Q Consensus 268 ~~l-~~-~~sspvvD~dG~IWVGT--~~gGLy~~d~~-g~~~~~~~~~~~~~-----~ilssp~V~~Il~DsdG~IwI~T 337 (626)
... +. .......+.+|...+++ ....||.+..+ |.+.+......+.. +-...|.|.++ +.|.+|||+
T Consensus 244 qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si---~sg~v~iw~ 320 (405)
T KOG1273|consen 244 QDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI---ASGVVYIWA 320 (405)
T ss_pred HHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec---cCCceEEEE
Confidence 000 00 12345566566544443 23468888765 66555433211111 11123333233 789999998
Q ss_pred ee
Q 006913 338 LM 339 (626)
Q Consensus 338 ~t 339 (626)
..
T Consensus 321 ~~ 322 (405)
T KOG1273|consen 321 VV 322 (405)
T ss_pred ee
Confidence 64
No 80
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=88.16 E-value=38 Score=35.76 Aligned_cols=198 Identities=12% Similarity=0.074 Sum_probs=99.4
Q ss_pred cccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEE-EEEcCCeEEEEEc--CCeEEE
Q 006913 79 IGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIA-VSTSSSSVYINVK--GRALFA 153 (626)
Q Consensus 79 i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~-~~d~dG~LwIgT~--~gGL~a 153 (626)
.+.++-.+.+|...+.+ +..|..||..+++. ..-...+ +. + +..+ ....+..+..++. +.-|-+
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~----~~ti~sk---ky--G--~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ----VKTINSK---KY--G--VDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCce----eeEeecc---cc--c--ccEEEEecCCceEEEccCCCCCceEE
Confidence 34455566778877764 56888888877642 1111111 00 0 1111 1223344444443 345666
Q ss_pred EeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEE-EcCCCeEEEEeCCCCeEEEEEcCCCCCcce
Q 006913 154 FMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYI-SNTQGELYSLSAHSPYFNWIQDLSSFDKAF 231 (626)
Q Consensus 154 ~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwI-GT~~GgL~~ld~~tg~~~w~~~~~s~~~v~ 231 (626)
++.. .+.+-.+. |. .....++.+.+ .+..++ +..+..|..+|.+..+-+-..... ..+
T Consensus 85 Lsl~dNkylRYF~------GH----------~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~---~~p 144 (311)
T KOG1446|consen 85 LSLHDNKYLRYFP------GH----------KKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS---GRP 144 (311)
T ss_pred EEeecCceEEEcC------CC----------CceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecC---CCc
Confidence 6653 33332220 10 01122333333 234444 445667777777654332222211 123
Q ss_pred eeeeecCCeEEEEEcCCCEEEEEECC--CCcEEEEEecC-CCCCceeeEEEeeCC-eEEEEEcCCeEEEEcC-CCCEEEE
Q 006913 232 TLTPGNNGYLYVTIPVRALVLALDTS--SGNILWHKSVG-PLGSAEYAPVVDSNG-WISVGSLDGLLYSFSP-SGVLNKF 306 (626)
Q Consensus 232 sI~~D~dG~LwVGT~~gG~l~alD~~--tG~~~w~~~~~-~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~-~g~~~~~ 306 (626)
.++.|.+|.+++.......+-.+|.+ +..+...+.++ +....+..+-...|| .|.++|..+-++.+|. +|.++..
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t 224 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST 224 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee
Confidence 45788899888776554466666643 22233333332 111123445555666 5888998888999997 6876553
Q ss_pred e
Q 006913 307 S 307 (626)
Q Consensus 307 ~ 307 (626)
.
T Consensus 225 f 225 (311)
T KOG1446|consen 225 F 225 (311)
T ss_pred E
Confidence 3
No 81
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=87.40 E-value=0.22 Score=36.24 Aligned_cols=18 Identities=33% Similarity=0.696 Sum_probs=12.2
Q ss_pred HHHHhheeeEEEeecccc
Q 006913 408 LVLAVLVRFCCIFWRKKK 425 (626)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~ 425 (626)
|+.++|.-|+|+||||+|
T Consensus 23 vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 23 VIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred HHHHHHHHHhheEEeccC
Confidence 334556667888888876
No 82
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=86.73 E-value=41 Score=34.65 Aligned_cols=200 Identities=16% Similarity=0.154 Sum_probs=96.4
Q ss_pred ccCeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-CCeEEEEe
Q 006913 80 GTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK-GRALFAFM 155 (626)
Q Consensus 80 ~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-~gGL~a~d 155 (626)
.+.+..+. .+.||..+ .+.|+.++.++... ..+.+.. . .-...+....++.+.+..+ .+.|+.++
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vl----r~i~l~g------~-~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVL----RRIPLDG------F-GDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT--EE----EEEE-SS--------SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcCCCCEE----EEEeCCC------C-CCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 45666665 47799888 47899999865311 1122211 0 1223334445666666664 46677776
Q ss_pred C--CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCC--CeEEEEeC--CCCeEEEEEc--CC--
Q 006913 156 T--HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQ--GELYSLSA--HSPYFNWIQD--LS-- 225 (626)
Q Consensus 156 ~--~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~--GgL~~ld~--~tg~~~w~~~--~~-- 225 (626)
. .++.+-........++.. ...| ..+ -.++.|..+++++++... .+||.++. .......... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~--~~~N---~G~-EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFP--NKGN---KGF-EGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp E----TT--EEEEEEEE---S-----S---S---EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred EeccccccchhhceEEecccc--cCCC---cce-EEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccc
Confidence 4 222111100000011100 0011 111 235677657889988653 35787765 2222222211 11
Q ss_pred --CCCcceeeeee-cCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC----CCC---ceeeEEEeeCCeEEEEEcCCeEE
Q 006913 226 --SFDKAFTLTPG-NNGYLYVTIPVRALVLALDTSSGNILWHKSVGP----LGS---AEYAPVVDSNGWISVGSLDGLLY 295 (626)
Q Consensus 226 --s~~~v~sI~~D-~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~----l~~---~~sspvvD~dG~IWVGT~~gGLy 295 (626)
....+.++..+ ..|+|||-+.....+..+| .+|+++-...... +.. ..-.++.|++|+|||.+..+-.|
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy 245 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFY 245 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEE
T ss_pred cceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEE
Confidence 11223445555 4679999988778899999 6788765544332 001 13357889999999999887777
Q ss_pred EE
Q 006913 296 SF 297 (626)
Q Consensus 296 ~~ 297 (626)
+|
T Consensus 246 ~f 247 (248)
T PF06977_consen 246 RF 247 (248)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 83
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=85.84 E-value=50 Score=34.72 Aligned_cols=223 Identities=12% Similarity=0.105 Sum_probs=101.9
Q ss_pred EEEEEe--CCcEEEEcC--CCCEE--EEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECC-CCccccceeEEEe
Q 006913 49 KIYACS--EKTLFAFES--NGTIA--WSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLL-KIGTSESATQVFY 118 (626)
Q Consensus 49 ~IwIgS--dggL~a~d~--~G~~~--W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~-~~~~~~~~~~~~~ 118 (626)
.+|++. ++++..++. +|++. -..... .....+.++.+++ ||++. +++|..++.+ ++.. ...
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-----~~~- 73 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-----TFA- 73 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecC---CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-----EEe-
Confidence 367775 567888875 35432 122221 1123445666665 78876 5788776654 2211 110
Q ss_pred cCCCCCCCCCCeeEEEEEEcCC-eEEEEEc-CCeEEEEeCC--CcEEEEECCcccccccccccccCCCCCccccceEEEc
Q 006913 119 GTGSGKGGTGAIAGIAVSTSSS-SVYINVK-GRALFAFMTH--GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQ 194 (626)
Q Consensus 119 ~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~-~gGL~a~d~~--G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~ 194 (626)
.... ..+.. ..+..+.+| .||++.+ ++.|..++.+ |...-... ... ..... ....+++
T Consensus 74 ~~~~---~~~~p-~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~----~~~-------~~~~~---~~~~~~p 135 (330)
T PRK11028 74 AESP---LPGSP-THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ----IIE-------GLEGC---HSANIDP 135 (330)
T ss_pred eeec---CCCCc-eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee----ecc-------CCCcc---cEeEeCC
Confidence 0000 00111 223344444 5777765 3556777643 42210000 000 00000 1133454
Q ss_pred CCCeEEEEcC-CCeEEEEeCCC-CeEEE----EEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECC--CCcEEEEE
Q 006913 195 CEGSIYISNT-QGELYSLSAHS-PYFNW----IQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTS--SGNILWHK 265 (626)
Q Consensus 195 ~dG~LwIGT~-~GgL~~ld~~t-g~~~w----~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~--tG~~~w~~ 265 (626)
.+..+|++.. .+.|..+|.++ +.+.- ............+....|| .+|++....+.+..++.. ++......
T Consensus 136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEE
Confidence 2456787765 36688887765 32211 0111111123345555666 688887545666555543 45543222
Q ss_pred ecC--C--C-C-CceeeEEEeeCC-eEEEEEc-CCeEEEEc
Q 006913 266 SVG--P--L-G-SAEYAPVVDSNG-WISVGSL-DGLLYSFS 298 (626)
Q Consensus 266 ~~~--~--l-~-~~~sspvvD~dG-~IWVGT~-~gGLy~~d 298 (626)
... + . + .....+..+++| .+|++.. ++.|..|+
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 111 1 0 0 111234555665 5888754 34565555
No 84
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=85.69 E-value=52 Score=34.79 Aligned_cols=183 Identities=10% Similarity=0.073 Sum_probs=96.5
Q ss_pred cCeEEec-CCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-
Q 006913 81 TAPVHGG-TGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH- 157 (626)
Q Consensus 81 ~sp~iD~-dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~- 157 (626)
+++-.+. .+.|.+++ ++.|..|+..... .+..+. ...++..+... .+..+|.|+-++-|-.+|.+
T Consensus 17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~-----l~~~~~------~~~plL~c~F~-d~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANS-----LKLKFK------HGAPLLDCAFA-DESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred eeEEEcCcCCcEEEEeccCcEEEEeccchh-----hhhhee------cCCceeeeecc-CCceEEEeccCceEEEEEecC
Confidence 3333333 34566666 8888888766532 111111 11223333333 36789999999999999976
Q ss_pred CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeec
Q 006913 158 GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGN 237 (626)
Q Consensus 158 G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~ 237 (626)
|+.. ..+. ++. .+ ..+......|.|.-|.+++-|-.+|+++....-..+ ....++++-+ .
T Consensus 85 ~~~~-~igt------------h~~---~i-~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v-~ 144 (323)
T KOG1036|consen 85 GNED-QIGT------------HDE---GI-RCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDV-S 144 (323)
T ss_pred Ccce-eecc------------CCC---ce-EEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEec-c
Confidence 4432 2211 111 11 122221126778889999999999998732222112 1235665543 3
Q ss_pred CCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCC-eEEEEEcCCeEEE
Q 006913 238 NGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNG-WISVGSLDGLLYS 296 (626)
Q Consensus 238 dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~~gGLy~ 296 (626)
+.+|.||+. +..+..+|..+-....+....++.-.+.++..-+++ -..+++-+|.+..
T Consensus 145 g~~LvVg~~-~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 145 GNRLVVGTS-DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV 203 (323)
T ss_pred CCEEEEeec-CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence 558888885 457777887665543332222221112333333333 3445666666654
No 85
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.63 E-value=51 Score=34.64 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=46.5
Q ss_pred eeEEeeCCEEEEEeCC--------------cEEEEcC-CCCEEEEEeCCCC----CCcccCeEEecC------CeEEEEE
Q 006913 41 KPLIGEDGKIYACSEK--------------TLFAFES-NGTIAWSLDLDFT----CNIGTAPVHGGT------GEVYIVA 95 (626)
Q Consensus 41 spvid~dG~IwIgSdg--------------gL~a~d~-~G~~~W~~~~~~~----~~i~~sp~iD~d------G~IwVgT 95 (626)
+..+|..|+||+-..| .|++||. +++++..+.++.. ......+.+|.. +.+||+.
T Consensus 5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD 84 (287)
T PF03022_consen 5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD 84 (287)
T ss_dssp EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE
T ss_pred EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC
Confidence 5678899999995311 5899998 8887766666432 134556777762 4689886
Q ss_pred --CCeEEEEECCCCc
Q 006913 96 --ENRVLKVDLLKIG 108 (626)
Q Consensus 96 --~ggL~~id~~~~~ 108 (626)
..||.++|..+++
T Consensus 85 ~~~~glIV~dl~~~~ 99 (287)
T PF03022_consen 85 SGGPGLIVYDLATGK 99 (287)
T ss_dssp TTTCEEEEEETTTTE
T ss_pred CCcCcEEEEEccCCc
Confidence 5799999998874
No 86
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=85.47 E-value=71 Score=36.16 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=55.6
Q ss_pred CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCce
Q 006913 196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAE 274 (626)
Q Consensus 196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~ 274 (626)
++.|..-+.+|-|..|++..+.+..... +-+..+.++.+..|| .||-|+. .|.+...+..+|.--...... -.+.+
T Consensus 290 kd~lItVSl~G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~~i~Sgsy-DG~I~~W~~~~g~~~~~~g~~-h~nqI 366 (603)
T KOG0318|consen 290 KDHLITVSLSGTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGKTIYSGSY-DGHINSWDSGSGTSDRLAGKG-HTNQI 366 (603)
T ss_pred CCeEEEEEcCcEEEEecccCCChhheec-ccccceeEEEEcCCCCEEEeecc-CceEEEEecCCcccccccccc-ccceE
Confidence 4445444456777778777765322111 113345566665555 6888875 467777776555432111000 01234
Q ss_pred eeEEEeeCCeEEEEEcCCeEEEEcC
Q 006913 275 YAPVVDSNGWISVGSLDGLLYSFSP 299 (626)
Q Consensus 275 sspvvD~dG~IWVGT~~gGLy~~d~ 299 (626)
..+.....+.++...++..|.+++.
T Consensus 367 ~~~~~~~~~~~~t~g~Dd~l~~~~~ 391 (603)
T KOG0318|consen 367 KGMAASESGELFTIGWDDTLRVISL 391 (603)
T ss_pred EEEeecCCCcEEEEecCCeEEEEec
Confidence 4556665577777777777777754
No 87
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=85.39 E-value=92 Score=37.43 Aligned_cols=152 Identities=16% Similarity=0.104 Sum_probs=83.4
Q ss_pred eEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEE-ecC
Q 006913 190 PVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHK-SVG 268 (626)
Q Consensus 190 pviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~-~~~ 268 (626)
.+++..+..+-+|+.+-+|-+++........... +....+.++-.+.+|.+.+....+|.++++|..++...... .+.
T Consensus 102 ~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~ 180 (933)
T KOG1274|consen 102 LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD 180 (933)
T ss_pred EEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCC
Confidence 3444313346667777778888776643322211 11224566777888887777666789999998888764322 111
Q ss_pred C-----CCCceeeEEEeeC-CeEEEEEcCCeEEEEcCCCCEEEE-eeccCCCCccccCceEEEEEEecCCcEEEEEeeec
Q 006913 269 P-----LGSAEYAPVVDSN-GWISVGSLDGLLYSFSPSGVLNKF-SKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVV 341 (626)
Q Consensus 269 ~-----l~~~~sspvvD~d-G~IWVGT~~gGLy~~d~~g~~~~~-~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~ 341 (626)
+ .....+.+...++ |++.+...++-|..|++.+-...+ .. +. ..++. +..+.-+..| .||++++..
T Consensus 181 k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr----~~-~~ss~-~~~~~wsPnG-~YiAAs~~~ 253 (933)
T KOG1274|consen 181 KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR----DK-LSSSK-FSDLQWSPNG-KYIAASTLD 253 (933)
T ss_pred ccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec----cc-ccccc-eEEEEEcCCC-cEEeeeccC
Confidence 1 0122334455555 777777778889999886532222 22 11 01222 2233344554 356666666
Q ss_pred CeeEEecc
Q 006913 342 GQFSSLLS 349 (626)
Q Consensus 342 Ggl~~~~~ 349 (626)
|++..+..
T Consensus 254 g~I~vWnv 261 (933)
T KOG1274|consen 254 GQILVWNV 261 (933)
T ss_pred CcEEEEec
Confidence 66655543
No 88
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=84.46 E-value=82 Score=37.90 Aligned_cols=196 Identities=14% Similarity=0.205 Sum_probs=106.9
Q ss_pred cCCceeeeeEEee-CCEEEEEeCCc--EEEEcCCCCEEEEEeCCC----CCC---cccCeEEecCCeEEEEE---CCeEE
Q 006913 34 RSAFRLSKPLIGE-DGKIYACSEKT--LFAFESNGTIAWSLDLDF----TCN---IGTAPVHGGTGEVYIVA---ENRVL 100 (626)
Q Consensus 34 ~~~~~~Sspvid~-dG~IwIgSdgg--L~a~d~~G~~~W~~~~~~----~~~---i~~sp~iD~dG~IwVgT---~ggL~ 100 (626)
..+...+.++++. .++=||.-+++ ++.-+.++.+........ .+. .-..++.+.+.+|.+-. .+.||
T Consensus 428 ~~~~~n~~Lavg~k~DrSfVvRg~~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~ly 507 (794)
T PF08553_consen 428 KDGEKNSSLAVGYKNDRSFVVRGSKIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKLY 507 (794)
T ss_pred cCCCccceeEeeeccCceEEECCCcEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCceE
Confidence 3466777788864 35566655443 444333343322211110 000 11123344555666654 47999
Q ss_pred EEECCCCccccceeEEEecCCCCCCCCCCeeEEEEE-----EcCCeEEEEEcCCeEEEEeCC--C-cEEEEECCcccccc
Q 006913 101 KVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVS-----TSSSSVYINVKGRALFAFMTH--G-QLLWSAGPVLDQLG 172 (626)
Q Consensus 101 ~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~-----d~dG~LwIgT~~gGL~a~d~~--G-~~~w~~~~~~~~~~ 172 (626)
.+|.+.++.. ..|..... ..+....+. ..+...++|...++|+++||. | +++|... . .
T Consensus 508 ~mDLe~GKVV---~eW~~~~~------~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~---k--~ 573 (794)
T PF08553_consen 508 KMDLERGKVV---EEWKVHDD------IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS---K--Q 573 (794)
T ss_pred EEecCCCcEE---EEeecCCC------cceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc---c--c
Confidence 9999998641 24543321 112222221 124578999888999999985 4 3455320 0 1
Q ss_pred cccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-CCcceeeeeecCCeEEEEEcCCCEE
Q 006913 173 YRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS-FDKAFTLTPGNNGYLYVTIPVRALV 251 (626)
Q Consensus 173 ~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-~~~v~sI~~D~dG~LwVGT~~gG~l 251 (626)
|.. ..++ ++.+... +|.|-||+..|-|..||.-+ +. -...+++ ...+..+-+..||+-.+||.. -.+
T Consensus 574 Y~~-------~~~F-s~~aTt~-~G~iavgs~~G~IRLyd~~g-~~-AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyL 641 (794)
T PF08553_consen 574 YSS-------KNNF-SCFATTE-DGYIAVGSNKGDIRLYDRLG-KR-AKTALPGLGDPIIGIDVTADGKWILATCK-TYL 641 (794)
T ss_pred ccc-------CCCc-eEEEecC-CceEEEEeCCCcEEeecccc-hh-hhhcCCCCCCCeeEEEecCCCcEEEEeec-ceE
Confidence 111 1123 4555664 99999999999888888543 21 1122233 234556667789998888875 355
Q ss_pred EEEE
Q 006913 252 LALD 255 (626)
Q Consensus 252 ~alD 255 (626)
..++
T Consensus 642 lLi~ 645 (794)
T PF08553_consen 642 LLID 645 (794)
T ss_pred EEEE
Confidence 5454
No 89
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=83.97 E-value=62 Score=34.24 Aligned_cols=232 Identities=12% Similarity=0.090 Sum_probs=116.3
Q ss_pred CceeeeeEEee-CCEEEEEe-CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCcccc
Q 006913 36 AFRLSKPLIGE-DGKIYACS-EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSE 111 (626)
Q Consensus 36 ~~~~Sspvid~-dG~IwIgS-dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~ 111 (626)
....|+.-... .+.|.+++ ++.|-.|+. ...++-.+.... ++...-+. ++..+|.|+ ++.|..+|.+++.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~--plL~c~F~-d~~~~~~G~~dg~vr~~Dln~~~--- 86 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGA--PLLDCAFA-DESTIVTGGLDGQVRRYDLNTGN--- 86 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCC--ceeeeecc-CCceEEEeccCceEEEEEecCCc---
Confidence 34455555543 46777777 787888876 223222222211 22222222 456899998 9999999998863
Q ss_pred ceeEEEecCCCCCCCCCCeeEEEEE-EcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccce
Q 006913 112 SATQVFYGTGSGKGGTGAIAGIAVS-TSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVP 190 (626)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~I~s~~~-d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ssp 190 (626)
....+. ....+.++.. ...|.+.-|++++-+-.+|+..+..-. . + .. +.-+ .+
T Consensus 87 ---~~~igt------h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~--~----~--d~-------~kkV-y~- 140 (323)
T KOG1036|consen 87 ---EDQIGT------HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG--T----F--DQ-------GKKV-YC- 140 (323)
T ss_pred ---ceeecc------CCCceEEEEeeccCCeEEEcccCccEEEEecccccccc--c----c--cc-------CceE-EE-
Confidence 111111 1223444332 456778888888888888875422110 0 0 00 0111 12
Q ss_pred EEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCC-CcceeeeeecCCeEEEEEcCCCEEEE--EECC----CCcEEE
Q 006913 191 VIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSF-DKAFTLTPGNNGYLYVTIPVRALVLA--LDTS----SGNILW 263 (626)
Q Consensus 191 viD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~-~~v~sI~~D~dG~LwVGT~~gG~l~a--lD~~----tG~~~w 263 (626)
.|-.+++|.+|+.+-.+..||.++-..-......+. ..+.+++.-.++.=|+.+.-.|.+.. +|.. ..++..
T Consensus 141 -~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaF 219 (323)
T KOG1036|consen 141 -MDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF 219 (323)
T ss_pred -EeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeE
Confidence 222267899999888899999887543321111121 12344444334444444433344432 2221 111111
Q ss_pred --EEecCCCCCc---eeeEEEee-CCeEEEEEcCCeEEEEcCC
Q 006913 264 --HKSVGPLGSA---EYAPVVDS-NGWISVGSLDGLLYSFSPS 300 (626)
Q Consensus 264 --~~~~~~l~~~---~sspvvD~-dG~IWVGT~~gGLy~~d~~ 300 (626)
+......... +.++.+.+ .|++.-|..+|-|.++|+.
T Consensus 220 kCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 220 KCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred EeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 0111100011 22333332 3678888888888888874
No 90
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.27 E-value=83 Score=35.17 Aligned_cols=222 Identities=12% Similarity=0.069 Sum_probs=110.1
Q ss_pred ccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEE-eC
Q 006913 80 GTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAF-MT 156 (626)
Q Consensus 80 ~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~-d~ 156 (626)
.++..+-.||.|..+. .|-|-.+|.++... ..... ....++-..-....++++++...++++..+ |.
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i----LR~~~------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI----LRQLY------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHH----HHHHh------hccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 4455556789988875 46677778544210 00000 011112222233456666655445555554 44
Q ss_pred CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCe-EEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeee
Q 006913 157 HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS-IYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTP 235 (626)
Q Consensus 157 ~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~-LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~ 235 (626)
++... .+ .+ ....+++.+.-+... ++. +.-|.|+|-|-.+|.+... .|....+-...+..+..
T Consensus 141 s~a~v-~~-----~l--------~~htDYVR~g~~~~~-~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~ 204 (487)
T KOG0310|consen 141 STAYV-QA-----EL--------SGHTDYVRCGDISPA-NDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLA 204 (487)
T ss_pred CCcEE-EE-----Ee--------cCCcceeEeeccccC-CCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEE
Confidence 43332 21 00 001133322222332 444 5567888888888887743 45544332112334444
Q ss_pred ecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeC-CeEEEEEcCCeEEEEcCC-CCEEEEeeccCCC
Q 006913 236 GNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSN-GWISVGSLDGLLYSFSPS-GVLNKFSKSDTSD 313 (626)
Q Consensus 236 D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~d-G~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~ 313 (626)
-..|.+.+.. +|..+-..|..+|...-....+ ....++++....+ -.++-|+.++.+-.|+.+ -+.....
T Consensus 205 lpsgs~iasA-gGn~vkVWDl~~G~qll~~~~~-H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~------ 276 (487)
T KOG0310|consen 205 LPSGSLIASA-GGNSVKVWDLTTGGQLLTSMFN-HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW------ 276 (487)
T ss_pred cCCCCEEEEc-CCCeEEEEEecCCceehhhhhc-ccceEEEEEeecCCceEeecccccceEEEEccceEEEEee------
Confidence 4566666543 4556666787766554321111 1123555666544 468888899999999843 2333221
Q ss_pred CccccCceEEEEEEecCCcEEEEE
Q 006913 314 SVIQSSPYWFHLLGPSIGLKAILC 337 (626)
Q Consensus 314 ~~ilssp~V~~Il~DsdG~IwI~T 337 (626)
-+++|.+..-+.+.+-.+++|-
T Consensus 277 --~~~~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 277 --KYPGPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred --ecccceeeEEecCCCceEEEec
Confidence 1345554333344455666554
No 91
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=83.02 E-value=70 Score=34.19 Aligned_cols=242 Identities=16% Similarity=0.203 Sum_probs=111.4
Q ss_pred eeEEee-CCEEEEEeC-----CcEEEEc--CC-CCEEE--EEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCC
Q 006913 41 KPLIGE-DGKIYACSE-----KTLFAFE--SN-GTIAW--SLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLK 106 (626)
Q Consensus 41 spvid~-dG~IwIgSd-----ggL~a~d--~~-G~~~W--~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~ 106 (626)
-..++. ...||+..+ +++.+|. .+ |++.. +..... .....+.++.+++ ||++. ++.|..++...
T Consensus 41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g--~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG--SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS--SCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC--CCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 334443 456788753 3565555 33 65432 121111 1123355677766 56665 56777766554
Q ss_pred -CccccceeEEEe-cCCCCC-CCCCCeeEEEEEEcCC-eEEEEEcC-CeEEEEeCC---CcEEEEECCcccccccccccc
Q 006913 107 -IGTSESATQVFY-GTGSGK-GGTGAIAGIAVSTSSS-SVYINVKG-RALFAFMTH---GQLLWSAGPVLDQLGYRQGCT 178 (626)
Q Consensus 107 -~~~~~~~~~~~~-~~~~~~-~~~~~~I~s~~~d~dG-~LwIgT~~-gGL~a~d~~---G~~~w~~~~~~~~~~~~~~~~ 178 (626)
+.+......+.+ +..+.. .....-...+..+.+| .+|+...+ +.|+.|+.+ +++.... .+....
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~-----~~~~~~--- 190 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD-----SIKVPP--- 190 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE-----EEECST---
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee-----cccccc---
Confidence 322111111111 011110 1112233445556565 57776543 557777643 3332211 000000
Q ss_pred cCCCCCccccceEEEcCCCeEEEEcC-CCeEEEEeCC--CCeEEEEEcCC----C---CCcceeeeeecCC-eEEEEEcC
Q 006913 179 KTDVDCYFTSVPVIDQCEGSIYISNT-QGELYSLSAH--SPYFNWIQDLS----S---FDKAFTLTPGNNG-YLYVTIPV 247 (626)
Q Consensus 179 ~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~~ld~~--tg~~~w~~~~~----s---~~~v~sI~~D~dG-~LwVGT~~ 247 (626)
. .. ...+++.+.+..+|+.+. .+.|..++.+ ++.+...+... . ......|....|| .|||....
T Consensus 191 -G--~G--PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~ 265 (345)
T PF10282_consen 191 -G--SG--PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG 265 (345)
T ss_dssp -T--SS--EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT
T ss_pred -C--CC--CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc
Confidence 0 01 123455542456888754 4556666555 66665544321 1 1134457777778 68987744
Q ss_pred CCEE--EEEECCCCcEEEEEecCCCCCceeeEEEeeCC-eEEEEEcC-CeEEEE
Q 006913 248 RALV--LALDTSSGNILWHKSVGPLGSAEYAPVVDSNG-WISVGSLD-GLLYSF 297 (626)
Q Consensus 248 gG~l--~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~~-gGLy~~ 297 (626)
...+ +.+|..+|.+.........+.....+.++++| .||++..+ +.|..|
T Consensus 266 ~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 266 SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 4444 44555677765432221112334556776665 58888754 355554
No 92
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.08 E-value=75 Score=33.82 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=61.1
Q ss_pred cceEEEcCCCeEEEEcCCC-------eEEEEeCCCCeEEEEEcCC-----CCCcceeeeeecCCeEE-EEEcCCCEEEEE
Q 006913 188 SVPVIDQCEGSIYISNTQG-------ELYSLSAHSPYFNWIQDLS-----SFDKAFTLTPGNNGYLY-VTIPVRALVLAL 254 (626)
Q Consensus 188 sspviD~~dG~LwIGT~~G-------gL~~ld~~tg~~~w~~~~~-----s~~~v~sI~~D~dG~Lw-VGT~~gG~l~al 254 (626)
..+.++. +|.+|+|.... -|..+-..+..+....-.. ...++.+|+.+.+|.++ +.++.++.+..+
T Consensus 166 RHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 166 RHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 3456775 89999986421 2333333333333321111 13467788998888655 555667788888
Q ss_pred ECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913 255 DTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS 300 (626)
Q Consensus 255 D~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~ 300 (626)
|..+|.++-..... -.+.++...++ ..+.+..|.++..+..
T Consensus 245 d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG~G~~~~~~~~ 285 (305)
T PF07433_consen 245 DAATGRLLGSVPLP----DACGVAPTDDG-FLVSSGQGQLIRLSPD 285 (305)
T ss_pred ECCCCCEeeccccC----ceeeeeecCCc-eEEeCCCccEEEccCc
Confidence 99999887544333 13444555445 4445545566666543
No 93
>PRK04922 tolB translocation protein TolB; Provisional
Probab=81.36 E-value=92 Score=34.41 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=53.5
Q ss_pred eEEEcCCCeEEEEcC-CC--eEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCC--CEEEEEECCCCcEEE
Q 006913 190 PVIDQCEGSIYISNT-QG--ELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVR--ALVLALDTSSGNILW 263 (626)
Q Consensus 190 pviD~~dG~LwIGT~-~G--gL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~g--G~l~alD~~tG~~~w 263 (626)
+...+.+..|++.+. .| .||.+|.++++.......+.. ...+....|| .|++.+..+ ..++.+|..+|....
T Consensus 297 ~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~--~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~ 374 (433)
T PRK04922 297 PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNY--NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT 374 (433)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCC--ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE
Confidence 444431334555443 22 489999887765433211111 1123334455 455444222 247778877776542
Q ss_pred EEecCCCCCceeeEEEeeCCe-EEEEEcC---CeEEEEcCCCCEE
Q 006913 264 HKSVGPLGSAEYAPVVDSNGW-ISVGSLD---GLLYSFSPSGVLN 304 (626)
Q Consensus 264 ~~~~~~l~~~~sspvvD~dG~-IWVGT~~---gGLy~~d~~g~~~ 304 (626)
.. .+. ....|...+||. |++.+.. ..||.++.+|...
T Consensus 375 Lt-~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~ 415 (433)
T PRK04922 375 LT-PGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR 415 (433)
T ss_pred CC-CCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 21 111 122355666665 4444432 3577777766543
No 94
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=81.31 E-value=75 Score=33.34 Aligned_cols=237 Identities=13% Similarity=0.149 Sum_probs=103.1
Q ss_pred eeeEEeeCC-EEEEEe--CCcEEEEcC--CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--CCeEEEEECCCCcccc
Q 006913 40 SKPLIGEDG-KIYACS--EKTLFAFES--NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--ENRVLKVDLLKIGTSE 111 (626)
Q Consensus 40 Sspvid~dG-~IwIgS--dggL~a~d~--~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~ggL~~id~~~~~~~~ 111 (626)
+...+..+| .||++. +++++.|+. +|.+.-....... .....+..+.+|+ +|++. ++.|..++.+......
T Consensus 38 ~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~-~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~ 116 (330)
T PRK11028 38 QPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP-GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV 116 (330)
T ss_pred ccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC-CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC
Confidence 334555565 477875 467766654 4544211111110 1122455677776 66665 5778888765321100
Q ss_pred ceeEEEecCCCCCCCCCCeeEEEEEEcC-CeEEEEEcC-CeEEEEeCC--CcEEEEECCcccccccccccccCCCCCccc
Q 006913 112 SATQVFYGTGSGKGGTGAIAGIAVSTSS-SSVYINVKG-RALFAFMTH--GQLLWSAGPVLDQLGYRQGCTKTDVDCYFT 187 (626)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~I~s~~~d~d-G~LwIgT~~-gGL~a~d~~--G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~ 187 (626)
.... ... .. ... ..+..+.+ ..+|+...+ +-|..++.+ |.+.-.. ...... .. +.. .
T Consensus 117 ~~~~-~~~-----~~-~~~-~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~~~~--~~-------g~~-p 177 (330)
T PRK11028 117 APIQ-IIE-----GL-EGC-HSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAEVTT--VE-------GAG-P 177 (330)
T ss_pred Ccee-ecc-----CC-Ccc-cEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCceec--CC-------CCC-C
Confidence 0000 000 00 011 12223444 467777654 557777753 4321100 000000 00 000 1
Q ss_pred cceEEEcCCCeEEEEcC-CCeEEEEeCC--CCeEEEEEcCCC-------CCcceeeeeecCC-eEEEEEcCCCEEEEEEC
Q 006913 188 SVPVIDQCEGSIYISNT-QGELYSLSAH--SPYFNWIQDLSS-------FDKAFTLTPGNNG-YLYVTIPVRALVLALDT 256 (626)
Q Consensus 188 sspviD~~dG~LwIGT~-~GgL~~ld~~--tg~~~w~~~~~s-------~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~ 256 (626)
..+.+.+.+..+|+.+. .+.|..++.+ ++++........ ......+....+| .||++....+.+..++.
T Consensus 178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 22455542456888876 6777777765 445544333211 0111234455566 58887533345544443
Q ss_pred --CCCcEEEEEecCCCCCceeeEEEeeCC-eEEEEEc-CCeEEEE
Q 006913 257 --SSGNILWHKSVGPLGSAEYAPVVDSNG-WISVGSL-DGLLYSF 297 (626)
Q Consensus 257 --~tG~~~w~~~~~~l~~~~sspvvD~dG-~IWVGT~-~gGLy~~ 297 (626)
.++.......... +.....+..+++| .||++.. ++.|..|
T Consensus 258 ~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 258 SEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVY 301 (330)
T ss_pred eCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEE
Confidence 2232222111110 1111234455455 6777665 3444444
No 95
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=81.28 E-value=1e+02 Score=34.84 Aligned_cols=188 Identities=12% Similarity=0.069 Sum_probs=101.6
Q ss_pred ccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-
Q 006913 80 GTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH- 157 (626)
Q Consensus 80 ~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~- 157 (626)
+.++..-.+|.+.-|. +|.++..++.+.++. .-.. ...+ -|...+...+|+|.-|..+.-|...|.+
T Consensus 249 Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~----k~~~------aH~g-gv~~L~~lr~GtllSGgKDRki~~Wd~~y 317 (626)
T KOG2106|consen 249 VLCVTFLENGDVITGDSGGNILIWSKGTNRIS----KQVH------AHDG-GVFSLCMLRDGTLLSGGKDRKIILWDDNY 317 (626)
T ss_pred EEEEEEcCCCCEEeecCCceEEEEeCCCceEE----eEee------ecCC-ceEEEEEecCccEeecCccceEEeccccc
Confidence 3345556788888776 677788888765431 1000 1112 3556667788888887777777777743
Q ss_pred CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeec
Q 006913 158 GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGN 237 (626)
Q Consensus 158 G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~ 237 (626)
.++.-. .++ ... .. ...++.. .+.|+|||..+.|..=+.+++...-.+-- .+....++.-.
T Consensus 318 ~k~r~~------elP------e~~--G~-iRtv~e~--~~di~vGTtrN~iL~Gt~~~~f~~~v~gh--~delwgla~hp 378 (626)
T KOG2106|consen 318 RKLRET------ELP------EQF--GP-IRTVAEG--KGDILVGTTRNFILQGTLENGFTLTVQGH--GDELWGLATHP 378 (626)
T ss_pred cccccc------cCc------hhc--CC-eeEEecC--CCcEEEeeccceEEEeeecCCceEEEEec--ccceeeEEcCC
Confidence 222111 011 000 11 1233333 45599999877666555555322211110 11222333333
Q ss_pred CCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCCCC
Q 006913 238 NGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGV 302 (626)
Q Consensus 238 dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g~ 302 (626)
+..+++.....+.+...+ +.++.|...+.. ...+..+++.|.|-+||..|..+.+|.+.+
T Consensus 379 s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d---~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~ 438 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWN--DHKLEWTKIIED---PAECADFHPSGVVAVGTATGRWFVLDTETQ 438 (626)
T ss_pred ChhheeeccCcceEEEcc--CCceeEEEEecC---ceeEeeccCcceEEEeeccceEEEEecccc
Confidence 344554332223333333 567888876552 122345677789999999999999997654
No 96
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=81.19 E-value=52 Score=37.62 Aligned_cols=117 Identities=7% Similarity=0.112 Sum_probs=61.1
Q ss_pred CeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEE--
Q 006913 89 GEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSA-- 164 (626)
Q Consensus 89 G~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~-- 164 (626)
-.||++. ...||++|.+.+.|..|. ....+.+....+....|-|-+||.++-+-++|+. ...+-..
T Consensus 146 cDly~~gsg~evYRlNLEqGrfL~P~----------~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 146 CDLYLVGSGSEVYRLNLEQGRFLNPF----------ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccEEEeecCcceEEEEcccccccccc----------ccccccceeeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence 3477765 778999999888642221 0111222222233455667777877778888874 2222111
Q ss_pred CCcccccccccccccCCCCCccccceEEEcCCC-eEEEEcCCCeEEEEeCCCCeEEEEEc
Q 006913 165 GPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEG-SIYISNTQGELYSLSAHSPYFNWIQD 223 (626)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG-~LwIGT~~GgL~~ld~~tg~~~w~~~ 223 (626)
...++..+. ... ..-.+++.... +| .+=|||..|.++.||.++.+.....+
T Consensus 216 ~~~v~s~pg----~~~---~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kd 267 (703)
T KOG2321|consen 216 ASSVNSHPG----GDA---APSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKD 267 (703)
T ss_pred ccccCCCcc----ccc---cCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecc
Confidence 000000000 000 00112333331 23 46789999999999999876655443
No 97
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=80.71 E-value=90 Score=33.84 Aligned_cols=135 Identities=10% Similarity=0.044 Sum_probs=75.8
Q ss_pred CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCcee
Q 006913 196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEY 275 (626)
Q Consensus 196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~s 275 (626)
+..|+-|+.++-|...|...|+..-.-. .....+.+++.-.+..+++... ...+-..+...|.+... ...-..++.
T Consensus 289 dpqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas-~dnik~w~~p~g~f~~n--lsgh~~iin 364 (460)
T KOG0285|consen 289 DPQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASAS-PDNIKQWKLPEGEFLQN--LSGHNAIIN 364 (460)
T ss_pred CCceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccC-CccceeccCCccchhhc--cccccceee
Confidence 6789999999988888888876543321 1122455555544455565432 23454555555655432 111122456
Q ss_pred eEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEEeeccCCCCccccCceEEEEEEecCCcEE
Q 006913 276 APVVDSNGWISVGSLDGLLYSFSPS-GVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKA 334 (626)
Q Consensus 276 spvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~Iw 334 (626)
++...+||.+..|.++|.++.+|-. |-.....+.....+.+.+.--|++.+.|+.|.=.
T Consensus 365 tl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rl 424 (460)
T KOG0285|consen 365 TLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRL 424 (460)
T ss_pred eeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceE
Confidence 6777778999999988888888743 4322222111111212333445666667666544
No 98
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=80.70 E-value=13 Score=41.64 Aligned_cols=115 Identities=11% Similarity=0.132 Sum_probs=68.0
Q ss_pred ccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-CCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEE
Q 006913 185 YFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS-FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILW 263 (626)
Q Consensus 185 ~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w 263 (626)
++.++.+.- .+..|.+|.....|-.+|......+....+.+ ....++++...|-++.+.....|.+...|..+.....
T Consensus 467 yiRSckL~p-dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr 545 (705)
T KOG0639|consen 467 YIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR 545 (705)
T ss_pred ceeeeEecC-CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee
Confidence 444433333 26678888776667777766644333322221 1122334444566677766566778778876666555
Q ss_pred EEecCCCCCceeeEEEeeCC-eEEEEEcCCeEEEEcCC-CC
Q 006913 264 HKSVGPLGSAEYAPVVDSNG-WISVGSLDGLLYSFSPS-GV 302 (626)
Q Consensus 264 ~~~~~~l~~~~sspvvD~dG-~IWVGT~~gGLy~~d~~-g~ 302 (626)
++.--.. -.+++.+..+| +||.|..++.|-++|.. +.
T Consensus 546 qfqGhtD--GascIdis~dGtklWTGGlDntvRcWDlregr 584 (705)
T KOG0639|consen 546 QFQGHTD--GASCIDISKDGTKLWTGGLDNTVRCWDLREGR 584 (705)
T ss_pred cccCCCC--CceeEEecCCCceeecCCCccceeehhhhhhh
Confidence 4432211 13556666566 69999999999999963 43
No 99
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=80.61 E-value=84 Score=34.28 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=68.5
Q ss_pred CCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcC--CCEEEEEECCCCcEEEEEecCCCC
Q 006913 196 EGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPV--RALVLALDTSSGNILWHKSVGPLG 271 (626)
Q Consensus 196 dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~--gG~l~alD~~tG~~~w~~~~~~l~ 271 (626)
+..+|+.+. .+.+..+|.++..+......+. ....++.+.+| .+||+... ...+..+|..++...-....+.
T Consensus 85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-- 160 (381)
T COG3391 85 GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-- 160 (381)
T ss_pred CCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC--
Confidence 556888764 3578888866654443322222 23445666656 99999863 4788899988887765443331
Q ss_pred CceeeEEEeeCCe-EEEEE-cCCeEEEEcCCCCEEE
Q 006913 272 SAEYAPVVDSNGW-ISVGS-LDGLLYSFSPSGVLNK 305 (626)
Q Consensus 272 ~~~sspvvD~dG~-IWVGT-~~gGLy~~d~~g~~~~ 305 (626)
.....+++++|. +|+.. .++.|..+|..+...+
T Consensus 161 -~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 161 -TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred -CcceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 124567788887 99887 4678889997765544
No 100
>PRK04792 tolB translocation protein TolB; Provisional
Probab=80.54 E-value=1e+02 Score=34.40 Aligned_cols=110 Identities=14% Similarity=0.140 Sum_probs=52.9
Q ss_pred eEEEcCCCeEEEEcC---CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCC--EEEEEECCCCcEEE
Q 006913 190 PVIDQCEGSIYISNT---QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRA--LVLALDTSSGNILW 263 (626)
Q Consensus 190 pviD~~dG~LwIGT~---~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG--~l~alD~~tG~~~w 263 (626)
|...+++..|++... ...||.+|.++++.......+... .......|| .|++.+..++ .++.+|..+|....
T Consensus 311 p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~--~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 311 PSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN--LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC--cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 444331344555433 235899999887654332111111 112233455 4555443222 56778887776542
Q ss_pred EEecCCCCCceeeEEEeeCCe-EEEEEcCC---eEEEEcCCCCEEE
Q 006913 264 HKSVGPLGSAEYAPVVDSNGW-ISVGSLDG---LLYSFSPSGVLNK 305 (626)
Q Consensus 264 ~~~~~~l~~~~sspvvD~dG~-IWVGT~~g---GLy~~d~~g~~~~ 305 (626)
... .. ....|...+||. |++.+..+ .||.++.+|+...
T Consensus 389 lt~-~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~ 430 (448)
T PRK04792 389 LTS-TR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKA 430 (448)
T ss_pred ccC-CC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceE
Confidence 211 11 112345555553 44444333 2777777665443
No 101
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=80.26 E-value=1e+02 Score=34.29 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=77.5
Q ss_pred eeEEEEEEcCCeEEEE-EcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEE-EcCCC
Q 006913 130 IAGIAVSTSSSSVYIN-VKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYI-SNTQG 206 (626)
Q Consensus 130 ~I~s~~~d~dG~LwIg-T~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwI-GT~~G 206 (626)
.+...+..+.|...++ |..+.||+.... |.++... .-.|. .+ +.+..-. +|..+| |..+|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ----------~I-TcL~fs~-dgs~iiTgskDg 145 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-----SAHYQ----------SI-TCLKFSD-DGSHIITGSKDG 145 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-----Hhhcc----------ce-eEEEEeC-CCcEEEecCCCc
Confidence 4555666677775555 477889999864 8764321 00111 11 2233322 555555 44455
Q ss_pred eEEEEeCC------CC---e--EEEEEcCCCCCcceeeeee---cCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCC
Q 006913 207 ELYSLSAH------SP---Y--FNWIQDLSSFDKAFTLTPG---NNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGS 272 (626)
Q Consensus 207 gL~~ld~~------tg---~--~~w~~~~~s~~~v~sI~~D---~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~ 272 (626)
.|..+..- .. + ..|..+ .-.+..+..+ .+.+||-++.+ ..+-.+|...|..+-....+ .
T Consensus 146 ~V~vW~l~~lv~a~~~~~~~p~~~f~~H---tlsITDl~ig~Gg~~~rl~TaS~D-~t~k~wdlS~g~LLlti~fp---~ 218 (476)
T KOG0646|consen 146 AVLVWLLTDLVSADNDHSVKPLHIFSDH---TLSITDLQIGSGGTNARLYTASED-RTIKLWDLSLGVLLLTITFP---S 218 (476)
T ss_pred cEEEEEEEeecccccCCCccceeeeccC---cceeEEEEecCCCccceEEEecCC-ceEEEEEeccceeeEEEecC---C
Confidence 55544321 10 0 001100 0123334443 34577777643 46666777778766544333 1
Q ss_pred ceeeEEEeeC-CeEEEEEcCCeEEEEcC
Q 006913 273 AEYAPVVDSN-GWISVGSLDGLLYSFSP 299 (626)
Q Consensus 273 ~~sspvvD~d-G~IWVGT~~gGLy~~d~ 299 (626)
.+.++++|+- -.+|+|+.+|.++.++-
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeeh
Confidence 2455677744 57999999999888873
No 102
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=79.64 E-value=91 Score=33.30 Aligned_cols=112 Identities=18% Similarity=0.271 Sum_probs=58.8
Q ss_pred ceEEEcCCCeEEEEcCCCeEEEEeCCCCeE-EEEEcCC-----CCCcceeeeeec----CCeEEEEEcCC--------CE
Q 006913 189 VPVIDQCEGSIYISNTQGELYSLSAHSPYF-NWIQDLS-----SFDKAFTLTPGN----NGYLYVTIPVR--------AL 250 (626)
Q Consensus 189 spviD~~dG~LwIGT~~GgL~~ld~~tg~~-~w~~~~~-----s~~~v~sI~~D~----dG~LwVGT~~g--------G~ 250 (626)
++...+ +|.|+|+...|.|+.++.++ .. ....... .......++.+. ++.||+..... ..
T Consensus 6 ~~a~~p-dG~l~v~e~~G~i~~~~~~g-~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~ 83 (331)
T PF07995_consen 6 SMAFLP-DGRLLVAERSGRIWVVDKDG-SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNR 83 (331)
T ss_dssp EEEEET-TSCEEEEETTTEEEEEETTT-EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEE
T ss_pred EEEEeC-CCcEEEEeCCceEEEEeCCC-cCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCccee
Confidence 355665 78999998888899998444 43 2222211 112244566654 58999986421 13
Q ss_pred EEEEECCCC--cE-----EEEE-ec-CCCCCceeeEEEeeCCeEEEEEcC--------------CeEEEEcCCCC
Q 006913 251 VLALDTSSG--NI-----LWHK-SV-GPLGSAEYAPVVDSNGWISVGSLD--------------GLLYSFSPSGV 302 (626)
Q Consensus 251 l~alD~~tG--~~-----~w~~-~~-~~l~~~~sspvvD~dG~IWVGT~~--------------gGLy~~d~~g~ 302 (626)
+..+....+ .. ++.. .. ....+.-..+.++++|.|||++.+ +.|.+++++|+
T Consensus 84 v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~ 158 (331)
T PF07995_consen 84 VVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS 158 (331)
T ss_dssp EEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS
T ss_pred eEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCc
Confidence 444433233 11 1211 11 111123456888999999998732 45666666554
No 103
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=79.28 E-value=32 Score=41.19 Aligned_cols=132 Identities=14% Similarity=0.198 Sum_probs=77.8
Q ss_pred CCeEEEEc--CCCeEEEEeCCCCeEE--EEEcCCCCCcceeeeee------cCCeEEEEEcCCCEEEEEECCC-C-cEEE
Q 006913 196 EGSIYISN--TQGELYSLSAHSPYFN--WIQDLSSFDKAFTLTPG------NNGYLYVTIPVRALVLALDTSS-G-NILW 263 (626)
Q Consensus 196 dG~LwIGT--~~GgL~~ld~~tg~~~--w~~~~~s~~~v~sI~~D------~dG~LwVGT~~gG~l~alD~~t-G-~~~w 263 (626)
+.++.+-+ ....||.+|.+.|+++ |..... ..+..++.+ .+...++|.. ...++.+|+.- | +..|
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~--~~v~~~~p~~K~aqlt~e~tflGls-~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDD--IPVVDIAPDSKFAQLTNEQTFLGLS-DNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCC--cceeEecccccccccCCCceEEEEC-CCceEEeccCCCCCceee
Confidence 44454433 3568999999999985 653321 113334333 1346788885 45888899863 3 2344
Q ss_pred EEecC-CCCCceeeEEEeeCCeEEEEEcCCeEEEEcCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEE
Q 006913 264 HKSVG-PLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILC 337 (626)
Q Consensus 264 ~~~~~-~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T 337 (626)
..... .-..-+++.+.+.+|.|-||+..|-|-.||..|+.-...- + + +..| |.+|-+..||.--++|
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~l--p--~--lG~p-I~~iDvt~DGkwilaT 636 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTAL--P--G--LGDP-IIGIDVTADGKWILAT 636 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcC--C--C--CCCC-eeEEEecCCCcEEEEe
Confidence 21111 0012356677888999999999999999997663211100 0 1 2233 4577778888744444
No 104
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=78.88 E-value=1.1e+02 Score=33.69 Aligned_cols=147 Identities=18% Similarity=0.291 Sum_probs=69.0
Q ss_pred EcCCeEEEEEc-CCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCe--EEEEcCC----C--e
Q 006913 137 TSSSSVYINVK-GRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS--IYISNTQ----G--E 207 (626)
Q Consensus 137 d~dG~LwIgT~-~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~--LwIGT~~----G--g 207 (626)
+....+++||. .+||+.||.+|+.+-.+.. + + .+|. .+....... +.. |-+++.. . .
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~-----G-r---~NNV---Dvrygf~l~--g~~vDlavas~R~~g~n~l~ 130 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDGKELQSLPV-----G-R---PNNV---DVRYGFPLN--GKTVDLAVASDRSDGRNSLR 130 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS-EEEEE-S-----S-----EEEE---EEEEEEEET--TEEEEEEEEEE-CCCT-EEE
T ss_pred CcccceEEEEeCCCCEEEEcCCCcEEEeecC-----C-C---ccee---eeecceecC--CceEEEEEEecCcCCCCeEE
Confidence 44556777764 5899999999988765411 0 1 1110 111111111 111 3333321 1 3
Q ss_pred EEEEeCCCCeEEEEEcCC-----CCCcc--eeeeee-cCCeEEEEEc-CCCEE--EEE-ECCCCcE----EEEEecCCCC
Q 006913 208 LYSLSAHSPYFNWIQDLS-----SFDKA--FTLTPG-NNGYLYVTIP-VRALV--LAL-DTSSGNI----LWHKSVGPLG 271 (626)
Q Consensus 208 L~~ld~~tg~~~w~~~~~-----s~~~v--~sI~~D-~dG~LwVGT~-~gG~l--~al-D~~tG~~----~w~~~~~~l~ 271 (626)
+|.+|+.++.+.-..+.. ....+ .|++.+ .+|.+|+-.. ..|.+ |.+ +..+|.+ .+.+...+
T Consensus 131 ~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s-- 208 (381)
T PF02333_consen 131 LFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS-- 208 (381)
T ss_dssp EEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--
T ss_pred EEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--
Confidence 788898877665432211 11222 344444 3565554321 22332 222 2234433 33444432
Q ss_pred CceeeEEEe-eCCeEEEEEcCCeEEEEcCC
Q 006913 272 SAEYAPVVD-SNGWISVGSLDGLLYSFSPS 300 (626)
Q Consensus 272 ~~~sspvvD-~dG~IWVGT~~gGLy~~d~~ 300 (626)
..-.+++| ..|.||+|-++-||++|+.+
T Consensus 209 -Q~EGCVVDDe~g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 209 -QPEGCVVDDETGRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp --EEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred -cceEEEEecccCCEEEecCccEEEEEecC
Confidence 23445665 55899999999999999853
No 105
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=78.62 E-value=91 Score=32.72 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=50.5
Q ss_pred ceEEEcCCCeEEEEcCC-------------CeEEEEeCCCCeEEEEEcCCC-----CCcceeeeeec------CCeEEEE
Q 006913 189 VPVIDQCEGSIYISNTQ-------------GELYSLSAHSPYFNWIQDLSS-----FDKAFTLTPGN------NGYLYVT 244 (626)
Q Consensus 189 spviD~~dG~LwIGT~~-------------GgL~~ld~~tg~~~w~~~~~s-----~~~v~sI~~D~------dG~LwVG 244 (626)
.+.+|+ .|+||+-..+ -.|..+|.+++++...+.++. ......+.+|. ++.+||+
T Consensus 5 ~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYIt 83 (287)
T PF03022_consen 5 RVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYIT 83 (287)
T ss_dssp EEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEE
T ss_pred EEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEe
Confidence 356785 8889985421 269999999999877665542 11234566664 2589999
Q ss_pred EcCCCEEEEEECCCCcEEEEEe
Q 006913 245 IPVRALVLALDTSSGNILWHKS 266 (626)
Q Consensus 245 T~~gG~l~alD~~tG~~~w~~~ 266 (626)
...+.+++.+|..+|+. |...
T Consensus 84 D~~~~glIV~dl~~~~s-~Rv~ 104 (287)
T PF03022_consen 84 DSGGPGLIVYDLATGKS-WRVL 104 (287)
T ss_dssp ETTTCEEEEEETTTTEE-EEEE
T ss_pred CCCcCcEEEEEccCCcE-EEEe
Confidence 87767999999988865 5543
No 106
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.51 E-value=1.2e+02 Score=34.51 Aligned_cols=148 Identities=13% Similarity=0.184 Sum_probs=83.2
Q ss_pred EcCCeEEEEEc--CCeEEEEeCC-CcEE--EEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEE
Q 006913 137 TSSSSVYINVK--GRALFAFMTH-GQLL--WSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSL 211 (626)
Q Consensus 137 d~dG~LwIgT~--~gGL~a~d~~-G~~~--w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~l 211 (626)
..+.+|.+-+. ..+|+.+|.. |+++ |..+..+ +... ... +...+.. ++ ++ -.+|-.+++|+++
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di---~mv~-----~t~-d~K~~Ql-~~-e~-TlvGLs~n~vfri 409 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDI---NMVD-----ITP-DFKFAQL-TS-EQ-TLVGLSDNSVFRI 409 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCCc---ceee-----ccC-Ccchhcc-cc-cc-cEEeecCCceEEe
Confidence 34444444332 3789999975 9875 6543211 0000 000 0111111 22 44 4567778899999
Q ss_pred eCCCC---eEEEEEcC--CCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEE
Q 006913 212 SAHSP---YFNWIQDL--SSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWIS 286 (626)
Q Consensus 212 d~~tg---~~~w~~~~--~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IW 286 (626)
|++-. ++.|.+.. ...+...|++...+|.|-||+. +|-+-.||. .|... ...++.++..+..+-+..+|.-.
T Consensus 410 DpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~-~GdIRLYdr-i~~~A-KTAlPgLG~~I~hVdvtadGKwi 486 (644)
T KOG2395|consen 410 DPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSL-KGDIRLYDR-IGRRA-KTALPGLGDAIKHVDVTADGKWI 486 (644)
T ss_pred cccccCcceeeeeeccccccccccceeeecCCceEEEeec-CCcEEeehh-hhhhh-hhcccccCCceeeEEeeccCcEE
Confidence 98642 34465432 1223345677778999999985 566666774 44322 12334444445445556688877
Q ss_pred EEEcCCeEEEEcC
Q 006913 287 VGSLDGLLYSFSP 299 (626)
Q Consensus 287 VGT~~gGLy~~d~ 299 (626)
+||-...|..++.
T Consensus 487 l~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 487 LATCKTYLLLIDT 499 (644)
T ss_pred EEecccEEEEEEE
Confidence 8887888887773
No 107
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=77.93 E-value=1.2e+02 Score=33.80 Aligned_cols=146 Identities=15% Similarity=0.071 Sum_probs=72.9
Q ss_pred EecCCe--EEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCC-Cc
Q 006913 85 HGGTGE--VYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTH-GQ 159 (626)
Q Consensus 85 iD~dG~--IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~-G~ 159 (626)
+..+|. |+.++ ..-+|.+|..+.+. ..+. .. .......+...-...++ .|-+....+-|+.+... ++
T Consensus 265 f~p~G~~~i~~s~rrky~ysyDle~ak~----~k~~--~~--~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 265 FAPNGHSVIFTSGRRKYLYSYDLETAKV----TKLK--PP--YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE 336 (514)
T ss_pred ecCCCceEEEecccceEEEEeecccccc----cccc--CC--CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence 334555 44444 45678888877532 1111 10 01111223333223333 34444455667777764 54
Q ss_pred EEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEE-cCCCCCcceeeeeecC
Q 006913 160 LLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQ-DLSSFDKAFTLTPGNN 238 (626)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~-~~~s~~~v~sI~~D~d 238 (626)
.+-.+ .. + .. .+.....+....||+....|.|+.+|.+..+..... +.++. .-.+++...+
T Consensus 337 li~s~---------Ki----e---G~-v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v-~gts~~~S~n 398 (514)
T KOG2055|consen 337 LITSF---------KI----E---GV-VSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV-HGTSLCISLN 398 (514)
T ss_pred hhhee---------ee----c---cE-EeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc-ceeeeeecCC
Confidence 43222 00 0 01 123344332566888878889999999988765432 22222 2234565667
Q ss_pred CeEEEEEcCCCEEEEEEC
Q 006913 239 GYLYVTIPVRALVLALDT 256 (626)
Q Consensus 239 G~LwVGT~~gG~l~alD~ 256 (626)
|.+.......|.+..||.
T Consensus 399 g~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 399 GSYLATGSDSGIVNIYDG 416 (514)
T ss_pred CceEEeccCcceEEEecc
Confidence 763332234566766763
No 108
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=77.44 E-value=1.3e+02 Score=33.96 Aligned_cols=229 Identities=10% Similarity=0.048 Sum_probs=110.6
Q ss_pred ceeeeeEEeeCCEEEEEe-CCcEEEEcCCC-CEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccce
Q 006913 37 FRLSKPLIGEDGKIYACS-EKTLFAFESNG-TIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESA 113 (626)
Q Consensus 37 ~~~Sspvid~dG~IwIgS-dggL~a~d~~G-~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~ 113 (626)
.-.-+....++|.+..|. +|.++.++..+ ++........ .-+.+++.-++|.|.-|. +..|...|.+-.+..
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~--ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r--- 321 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHD--GGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLR--- 321 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecC--CceEEEEEecCccEeecCccceEEeccccccccc---
Confidence 444445555788888776 55677777633 3322111111 123355555777776654 455555553222110
Q ss_pred eEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEE
Q 006913 114 TQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVI 192 (626)
Q Consensus 114 ~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspvi 192 (626)
....+ .. ...+..+.....+ |+|||..+-|..=+.+ +-.+-..+. . ... ...+.
T Consensus 322 -~~elP-----e~-~G~iRtv~e~~~d-i~vGTtrN~iL~Gt~~~~f~~~v~gh-------~---------del-wgla~ 376 (626)
T KOG2106|consen 322 -ETELP-----EQ-FGPIRTVAEGKGD-ILVGTTRNFILQGTLENGFTLTVQGH-------G---------DEL-WGLAT 376 (626)
T ss_pred -cccCc-----hh-cCCeeEEecCCCc-EEEeeccceEEEeeecCCceEEEEec-------c---------cce-eeEEc
Confidence 01111 11 1233444333333 8888776544432322 211111100 0 000 11122
Q ss_pred EcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCC
Q 006913 193 DQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLG 271 (626)
Q Consensus 193 D~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~ 271 (626)
.. ..++++... ++.+...+ ..++.|..... +...+...+..|.|-+|+. .|..+.+|.++...+....-+
T Consensus 377 hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~--d~~~~~~fhpsg~va~Gt~-~G~w~V~d~e~~~lv~~~~d~--- 447 (626)
T KOG2106|consen 377 HP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIE--DPAECADFHPSGVVAVGTA-TGRWFVLDTETQDLVTIHTDN--- 447 (626)
T ss_pred CC-ChhheeeccCcceEEEcc--CCceeEEEEec--CceeEeeccCcceEEEeec-cceEEEEecccceeEEEEecC---
Confidence 21 333444333 44444454 45888975532 1233444556778889985 468888998775544322112
Q ss_pred CceeeEEEeeCC-eEEEEEcCCeEEEE--cCCCCEE
Q 006913 272 SAEYAPVVDSNG-WISVGSLDGLLYSF--SPSGVLN 304 (626)
Q Consensus 272 ~~~sspvvD~dG-~IWVGT~~gGLy~~--d~~g~~~ 304 (626)
...+.+...++| .+-+|+.++.||.| +.+|...
T Consensus 448 ~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y 483 (626)
T KOG2106|consen 448 EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY 483 (626)
T ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE
Confidence 223334444454 68889999877766 4556543
No 109
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=75.67 E-value=0.7 Score=42.67 Aligned_cols=30 Identities=20% Similarity=0.598 Sum_probs=14.6
Q ss_pred eehhhHHHHHHHHhheeeEEEeeccccccccch
Q 006913 399 FLFFESVVLLVLAVLVRFCCIFWRKKKLQGQHL 431 (626)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (626)
|+||=.+|+++|++++-||| .+||+.++ |+
T Consensus 2 W~l~~iii~~i~l~~~~~~~--~~rRR~r~-G~ 31 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYC--HNRRRRRR-GL 31 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHH--HHHHHhhc-CC
Confidence 45554444444444444444 36665554 54
No 110
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=75.58 E-value=1.4e+02 Score=33.11 Aligned_cols=151 Identities=11% Similarity=0.105 Sum_probs=73.1
Q ss_pred EEcCCeEEEEEcCCeEEEEeCCCcEE--EEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeC
Q 006913 136 STSSSSVYINVKGRALFAFMTHGQLL--WSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSA 213 (626)
Q Consensus 136 ~d~dG~LwIgT~~gGL~a~d~~G~~~--w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~ 213 (626)
...+-.+..|+.+++++..|.+|++. |... +. .+ ...+.+...+..+++-+.+..+..|+.
T Consensus 321 ~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv--------r~-------~~--v~dlait~Dgk~vl~v~~d~~i~l~~~ 383 (519)
T KOG0293|consen 321 CPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV--------RD-------PK--VHDLAITYDGKYVLLVTVDKKIRLYNR 383 (519)
T ss_pred ccCCceeEecCCCCcEEEecCCcchhhccccc--------cc-------ce--eEEEEEcCCCcEEEEEecccceeeech
Confidence 33444577788889999999888763 4320 10 00 111222211445665555666777766
Q ss_pred CCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEe--eCCeEEEEEcC
Q 006913 214 HSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVD--SNGWISVGSLD 291 (626)
Q Consensus 214 ~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD--~dG~IWVGT~~ 291 (626)
.+..-+-... ....+.++....||++.+..-....+...|.+.......+.....+.++..-++. .+.-|--|+.+
T Consensus 384 e~~~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED 461 (519)
T KOG0293|consen 384 EARVDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED 461 (519)
T ss_pred hhhhhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCC
Confidence 6532110000 1123455666677776665432233333443332222111110112222111222 12346667888
Q ss_pred CeEEEEcCC-CCEEE
Q 006913 292 GLLYSFSPS-GVLNK 305 (626)
Q Consensus 292 gGLy~~d~~-g~~~~ 305 (626)
+.+|.++.. |+.+-
T Consensus 462 ~kvyIWhr~sgkll~ 476 (519)
T KOG0293|consen 462 SKVYIWHRISGKLLA 476 (519)
T ss_pred ceEEEEEccCCceeE
Confidence 999999874 66544
No 111
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=75.43 E-value=1.7e+02 Score=34.05 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=52.7
Q ss_pred CCeEEE-EcCCC-----eEEEEeCCCCeEEEEEcCCC-C-CcceeeeeecCCeEEEEEc-CC-----CEEEEEECCCCcE
Q 006913 196 EGSIYI-SNTQG-----ELYSLSAHSPYFNWIQDLSS-F-DKAFTLTPGNNGYLYVTIP-VR-----ALVLALDTSSGNI 261 (626)
Q Consensus 196 dG~LwI-GT~~G-----gL~~ld~~tg~~~w~~~~~s-~-~~v~sI~~D~dG~LwVGT~-~g-----G~l~alD~~tG~~ 261 (626)
+|.||+ |..+| .+-+||+.+.+ |..-.+. . ....++++ .+|.||+... .+ ..+.++|+.++
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~--W~~va~m~~~r~~~gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~-- 454 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNK--WTPVAPMLTRRSGHGVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETN-- 454 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCc--ccccCCCCcceeeeEEEE-ECCEEEEEcCcCCCccccceEEEEcCCCC--
Confidence 788885 44332 36788887753 6432211 1 11122222 4899998752 11 24678898776
Q ss_pred EEEEecCCC-CCceeeEEEeeCCeEEEEEcCCe------EEEEcCCCC
Q 006913 262 LWHKSVGPL-GSAEYAPVVDSNGWISVGSLDGL------LYSFSPSGV 302 (626)
Q Consensus 262 ~w~~~~~~l-~~~~sspvvD~dG~IWVGT~~gG------Ly~~d~~g~ 302 (626)
.|....+.. .......+.. +|.||+-....+ +-+|||..+
T Consensus 455 ~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 455 TWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred ceeecCCcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCC
Confidence 465432210 0111223333 788888543222 677887644
No 112
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=74.78 E-value=1.5e+02 Score=33.35 Aligned_cols=102 Identities=10% Similarity=0.136 Sum_probs=52.3
Q ss_pred eEEEcCCCeEEEEcC-CCeEEEEeCCCCeEEEEEcCC------CCCcceeeeee-------cCCeEEEEEcC--------
Q 006913 190 PVIDQCEGSIYISNT-QGELYSLSAHSPYFNWIQDLS------SFDKAFTLTPG-------NNGYLYVTIPV-------- 247 (626)
Q Consensus 190 pviD~~dG~LwIGT~-~GgL~~ld~~tg~~~w~~~~~------s~~~v~sI~~D-------~dG~LwVGT~~-------- 247 (626)
+...+ +|+|||... .|.|++++..++...-..... .......++.+ .++.||+....
T Consensus 35 maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~ 113 (454)
T TIGR03606 35 LLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELP 113 (454)
T ss_pred EEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCcc
Confidence 44554 789999887 588999987665432221111 11122334432 35678987411
Q ss_pred -CCEEEEEECC--CC-----cEEEEEecCC-CCCceeeEEEeeCCeEEEEEcCCe
Q 006913 248 -RALVLALDTS--SG-----NILWHKSVGP-LGSAEYAPVVDSNGWISVGSLDGL 293 (626)
Q Consensus 248 -gG~l~alD~~--tG-----~~~w~~~~~~-l~~~~sspvvD~dG~IWVGT~~gG 293 (626)
...+..+... +. +.++. ..+. -.+.-..+.+++||.|||++-+.+
T Consensus 114 ~~~~I~R~~l~~~~~~l~~~~~Il~-~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 114 NHTKIVRYTYDKSTQTLEKPVDLLA-GLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CCcEEEEEEecCCCCccccceEEEe-cCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence 1245444322 11 11111 1110 012234577888999999886653
No 113
>PRK05137 tolB translocation protein TolB; Provisional
Probab=73.86 E-value=1.5e+02 Score=32.77 Aligned_cols=107 Identities=16% Similarity=0.082 Sum_probs=49.9
Q ss_pred eEEEcCCCeEEEEcCC---CeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCC--CEEEEEECCCCcEEE
Q 006913 190 PVIDQCEGSIYISNTQ---GELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVR--ALVLALDTSSGNILW 263 (626)
Q Consensus 190 pviD~~dG~LwIGT~~---GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~g--G~l~alD~~tG~~~w 263 (626)
+...+++..|++.+.. ..||.+|.+++.......... ....+....|| .|++..... ..++.+|..++....
T Consensus 295 ~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~--~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~ 372 (435)
T PRK05137 295 PSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG--RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI 372 (435)
T ss_pred eeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC--cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe
Confidence 4444313446555432 259999988876544322111 11122233345 444443222 256667765544322
Q ss_pred EEecCCCCCceeeEEEeeCCe-EEEEEc-C-----CeEEEEcCCCC
Q 006913 264 HKSVGPLGSAEYAPVVDSNGW-ISVGSL-D-----GLLYSFSPSGV 302 (626)
Q Consensus 264 ~~~~~~l~~~~sspvvD~dG~-IWVGT~-~-----gGLy~~d~~g~ 302 (626)
...+ .....|...+||. |++.+. . ..||.++.+|.
T Consensus 373 -lt~~---~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 373 -LTSG---FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred -ccCC---CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 1111 1123455665664 444332 2 25788877653
No 114
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.07 E-value=85 Score=31.76 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=62.5
Q ss_pred CCeEEEEcC---CCeEEEEeCCCCeEEEEEcCCCCCccee-eeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCC
Q 006913 196 EGSIYISNT---QGELYSLSAHSPYFNWIQDLSSFDKAFT-LTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLG 271 (626)
Q Consensus 196 dG~LwIGT~---~GgL~~ld~~tg~~~w~~~~~s~~~v~s-I~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~ 271 (626)
+|.|+.++. ...|..+|..+|++.|...... +.++. -...-...+|.-|...+.-+.+|+.+-+.+-.++..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G-- 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG-- 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC-ccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCC--
Confidence 678888875 3358889999999999876542 12211 0122355899999877777788876655443332221
Q ss_pred CceeeEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913 272 SAEYAPVVDSNGWISVGSLDGLLYSFSPS 300 (626)
Q Consensus 272 ~~~sspvvD~dG~IWVGT~~gGLy~~d~~ 300 (626)
.-+ .+..| +.++|.+.....|+..||.
T Consensus 132 eGW-gLt~d-~~~LimsdGsatL~frdP~ 158 (262)
T COG3823 132 EGW-GLTSD-DKNLIMSDGSATLQFRDPK 158 (262)
T ss_pred cce-eeecC-CcceEeeCCceEEEecCHH
Confidence 112 24455 5568887766677777774
No 115
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=72.94 E-value=1.4e+02 Score=32.21 Aligned_cols=123 Identities=11% Similarity=0.145 Sum_probs=62.5
Q ss_pred EcCCeEEEEEcCCeEEEEeCCC-cEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCC---------
Q 006913 137 TSSSSVYINVKGRALFAFMTHG-QLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQG--------- 206 (626)
Q Consensus 137 d~dG~LwIgT~~gGL~a~d~~G-~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~G--------- 206 (626)
..++.+|+-|+.|.|+..+..| ...+.. + ...+.-.........+.+ ....+....++||+-.++|
T Consensus 193 ~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~-~-~~~~t~~e~~~~WrPGG~--Q~~A~~~~~~rlyvLMh~g~~gsHKdpg 268 (342)
T PF06433_consen 193 RDGGRLYFVSYEGNVYSADLSGDSAKFGK-P-WSLLTDAEKADGWRPGGW--QLIAYHAASGRLYVLMHQGGEGSHKDPG 268 (342)
T ss_dssp TTTTEEEEEBTTSEEEEEEETTSSEEEEE-E-EESS-HHHHHTTEEE-SS--S-EEEETTTTEEEEEEEE--TT-TTS-E
T ss_pred CCCCeEEEEecCCEEEEEeccCCcccccC-c-ccccCccccccCcCCcce--eeeeeccccCeEEEEecCCCCCCccCCc
Confidence 3566788889999999988653 322211 0 000000000001111111 1234443478898854422
Q ss_pred -eEEEEeCCCCeEEEEEcCCCCCcceeeee--ecCCeEEEEEcCCCEEEEEECCCCcEEEEE
Q 006913 207 -ELYSLSAHSPYFNWIQDLSSFDKAFTLTP--GNNGYLYVTIPVRALVLALDTSSGNILWHK 265 (626)
Q Consensus 207 -gL~~ld~~tg~~~w~~~~~s~~~v~sI~~--D~dG~LwVGT~~gG~l~alD~~tG~~~w~~ 265 (626)
.|..+|..+++..-..+... .+.+|.+ |.+-.||..+...+.++.+|..+|+.+...
T Consensus 269 teVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred eEEEEEECCCCeEEEEEeCCC--ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 47778888876654433211 1223343 434477776655578999999999887543
No 116
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=72.47 E-value=1.9e+02 Score=33.35 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=67.9
Q ss_pred eEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEE
Q 006913 141 SVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFN 219 (626)
Q Consensus 141 ~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~ 219 (626)
.||++..+..||.+|.. |..+-.+.. ..+ .+ ..+-+..++|-|-+||.+|-+-++|++.....
T Consensus 147 Dly~~gsg~evYRlNLEqGrfL~P~~~-------~~~--------~l-N~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv 210 (703)
T KOG2321|consen 147 DLYLVGSGSEVYRLNLEQGRFLNPFET-------DSG--------EL-NVVSINEEHGLLACGTEDGVVEFWDPRDKSRV 210 (703)
T ss_pred cEEEeecCcceEEEEcccccccccccc-------ccc--------cc-eeeeecCccceEEecccCceEEEecchhhhhh
Confidence 57777777889999985 866533211 100 11 11223335788889998999999999886544
Q ss_pred EEEcCC-------C---CCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEE
Q 006913 220 WIQDLS-------S---FDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHK 265 (626)
Q Consensus 220 w~~~~~-------s---~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~ 265 (626)
-..+.. . ...+.++....+| .+=|||. .|.++.+|..+.+++...
T Consensus 211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts-~G~v~iyDLRa~~pl~~k 266 (703)
T KOG2321|consen 211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS-TGSVLIYDLRASKPLLVK 266 (703)
T ss_pred eeeecccccCCCccccccCcceEEEecCCceeEEeecc-CCcEEEEEcccCCceeec
Confidence 322211 1 1235566666667 6888885 578888998877766543
No 117
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=72.23 E-value=83 Score=33.30 Aligned_cols=30 Identities=27% Similarity=0.577 Sum_probs=23.6
Q ss_pred EEeeCCEEEEEe--CCcEEEEcC-CCCEEEEEe
Q 006913 43 LIGEDGKIYACS--EKTLFAFES-NGTIAWSLD 72 (626)
Q Consensus 43 vid~dG~IwIgS--dggL~a~d~-~G~~~W~~~ 72 (626)
-.+.+|.+.|.. -..++.+++ +|+++|...
T Consensus 150 ~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lg 182 (299)
T PF14269_consen 150 DKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLG 182 (299)
T ss_pred eecCCccEEEEecccCEEEEEECCCCcEEEEeC
Confidence 444678888876 458999997 999999764
No 118
>PLN00181 protein SPA1-RELATED; Provisional
Probab=70.64 E-value=2.4e+02 Score=33.85 Aligned_cols=141 Identities=11% Similarity=-0.039 Sum_probs=74.7
Q ss_pred CeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCC-CeEEEEcCCCeEEEEeCCCCe
Q 006913 140 SSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCE-GSIYISNTQGELYSLSAHSPY 217 (626)
Q Consensus 140 G~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~d-G~LwIGT~~GgL~~ld~~tg~ 217 (626)
..|..++.++-|..+|.. ++.+..+.. +. ..+ .++...+.+ ..|..|+.++.|..+|.+++.
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~~~~~------------H~---~~V-~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVTEMKE------------HE---KRV-WSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEEEecC------------CC---CCE-EEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 445556667777778864 655443210 00 111 233333213 456677778889999998765
Q ss_pred EEEEEcCCCCCcceeeee-ecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEE
Q 006913 218 FNWIQDLSSFDKAFTLTP-GNNGY-LYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLY 295 (626)
Q Consensus 218 ~~w~~~~~s~~~v~sI~~-D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy 295 (626)
........ ..+.++.. ..+|. |.+|+ .++.+..+|..++........+. ...+..+.....+.|..|+.++.|.
T Consensus 610 ~~~~~~~~--~~v~~v~~~~~~g~~latgs-~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~~~~~lvs~s~D~~ik 685 (793)
T PLN00181 610 SIGTIKTK--ANICCVQFPSESGRSLAFGS-ADHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFVDSSTLVSSSTDNTLK 685 (793)
T ss_pred EEEEEecC--CCeEEEEEeCCCCCEEEEEe-CCCeEEEEECCCCCccceEecCC-CCCEEEEEEeCCCEEEEEECCCEEE
Confidence 54322211 12333332 23454 45555 45788889976654221111111 1123334333356777888888888
Q ss_pred EEcCC
Q 006913 296 SFSPS 300 (626)
Q Consensus 296 ~~d~~ 300 (626)
.+|..
T Consensus 686 iWd~~ 690 (793)
T PLN00181 686 LWDLS 690 (793)
T ss_pred EEeCC
Confidence 88753
No 119
>PRK03629 tolB translocation protein TolB; Provisional
Probab=70.63 E-value=1.8e+02 Score=32.26 Aligned_cols=109 Identities=15% Similarity=0.182 Sum_probs=52.6
Q ss_pred eEEEcCCCeEEEEcCC---CeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCC--CEEEEEECCCCcEEE
Q 006913 190 PVIDQCEGSIYISNTQ---GELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVR--ALVLALDTSSGNILW 263 (626)
Q Consensus 190 pviD~~dG~LwIGT~~---GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~g--G~l~alD~~tG~~~w 263 (626)
+...+++..|++.... -.||.+|.+++........... ...+....|| .|.+....+ ..++.+|..+|....
T Consensus 292 ~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~--~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 292 PTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQ--NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred eEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCC--ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 4444313345444332 2688899888765433221111 1123333455 344433222 357778887776542
Q ss_pred EEecCCCCCceeeEEEeeCCe-EEEEEcCCe---EEEEcCCCCEE
Q 006913 264 HKSVGPLGSAEYAPVVDSNGW-ISVGSLDGL---LYSFSPSGVLN 304 (626)
Q Consensus 264 ~~~~~~l~~~~sspvvD~dG~-IWVGT~~gG---Ly~~d~~g~~~ 304 (626)
... . . ....|...+||. |...+.+++ |+.++.+|+..
T Consensus 370 Lt~-~-~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 370 LTD-T-F--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 410 (429)
T ss_pred eCC-C-C--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe
Confidence 221 1 1 112455656664 555554443 66666666543
No 120
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=70.44 E-value=1.4e+02 Score=30.99 Aligned_cols=216 Identities=8% Similarity=0.002 Sum_probs=106.9
Q ss_pred cEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEE
Q 006913 57 TLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIA 134 (626)
Q Consensus 57 gL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~ 134 (626)
.+-.... +|.-...+..+. ..++.+-+..++....++ ...|-.||.+++.. .| ...+. .. ...|..+
T Consensus 21 TIRfWqa~tG~C~rTiqh~d--sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np-~P--v~t~e-----~h-~kNVtaV 89 (311)
T KOG0315|consen 21 TIRFWQALTGICSRTIQHPD--SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNP-NP--VATFE-----GH-TKNVTAV 89 (311)
T ss_pred eeeeeehhcCeEEEEEecCc--cceeeEEEcCCcchhhhccCCeeEEEEccCCCC-Cc--eeEEe-----cc-CCceEEE
Confidence 3333344 666544444332 234455555666655544 66777788766421 01 11111 11 1223332
Q ss_pred EEEcCC-eEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCC-CCccccceEEEcCCCeEEEEcCCCeEEEEe
Q 006913 135 VSTSSS-SVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDV-DCYFTSVPVIDQCEGSIYISNTQGELYSLS 212 (626)
Q Consensus 135 ~~d~dG-~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~-~~~i~sspviD~~dG~LwIGT~~GgL~~ld 212 (626)
-...+| -+|-|++++-+-..|...- .|+.+.. ... ..++++.+..+.|..|+.+|.|...|
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~----------------~~qR~~~~~sp-Vn~vvlhpnQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSL----------------SCQRNYQHNSP-VNTVVLHPNQTELISGDQSGNIRVWD 152 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCc----------------ccchhccCCCC-cceEEecCCcceEEeecCCCcEEEEE
Confidence 222333 3566665544434443210 0111111 011 13344443357799999999999998
Q ss_pred CCCCeEEEEEcCCC-CCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEE-ecCCC---CCceeeEEEeeCCeEEE
Q 006913 213 AHSPYFNWIQDLSS-FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHK-SVGPL---GSAEYAPVVDSNGWISV 287 (626)
Q Consensus 213 ~~tg~~~w~~~~~s-~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~-~~~~l---~~~~sspvvD~dG~IWV 287 (626)
......... ..+. ...+.++.+..||.+.++....|..|+.+..++...-.. +...+ ..........+++...+
T Consensus 153 l~~~~c~~~-liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la 231 (311)
T KOG0315|consen 153 LGENSCTHE-LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA 231 (311)
T ss_pred ccCCccccc-cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE
Confidence 877544322 2221 224567788889999988877788888886654432211 11110 11233344555554333
Q ss_pred -EEcCCeEEEEcCCC
Q 006913 288 -GSLDGLLYSFSPSG 301 (626)
Q Consensus 288 -GT~~gGLy~~d~~g 301 (626)
.+.+..++.++.++
T Consensus 232 t~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDD 246 (311)
T ss_pred eecCCceEEEEecCC
Confidence 23455666666554
No 121
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=68.47 E-value=3.3e+02 Score=34.60 Aligned_cols=203 Identities=16% Similarity=0.183 Sum_probs=101.3
Q ss_pred eEEeeCCEEEEEeCCcEEEEcCCCCEEEEEeCCCCCC-cccCeEEec-CCeEEEEE--CCeEEEEECCCCccccceeEEE
Q 006913 42 PLIGEDGKIYACSEKTLFAFESNGTIAWSLDLDFTCN-IGTAPVHGG-TGEVYIVA--ENRVLKVDLLKIGTSESATQVF 117 (626)
Q Consensus 42 pvid~dG~IwIgSdggL~a~d~~G~~~W~~~~~~~~~-i~~sp~iD~-dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~ 117 (626)
.+.+.||-++||.-+-+-++-++|...-...+..... .-.-+.++. +|.|||.. ...|+++.....+-.....++.
T Consensus 370 la~a~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evv 449 (1899)
T KOG4659|consen 370 LAYAPDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVV 449 (1899)
T ss_pred EEEcCCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEE
Confidence 3455799999998777777777887654344432110 001122222 68899875 4678887432221111112222
Q ss_pred ecCCCC----CCCC--C------Cee--EEEEEEcCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccccccccccCCC-
Q 006913 118 YGTGSG----KGGT--G------AIA--GIAVSTSSSSVYINVKGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDV- 182 (626)
Q Consensus 118 ~~~~~~----~~~~--~------~~I--~s~~~d~dG~LwIgT~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~- 182 (626)
.+.... .... + ..+ ..+..|++|.||++.. .-+-.+|.+|.+.-..+.-..+.+ ...|.....
T Consensus 450 aG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~-t~IR~iD~~giIstlig~~~~~~~-p~~C~~~~kl 527 (1899)
T KOG4659|consen 450 AGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADG-TRIRVIDTTGIISTLIGTTPDQHP-PRTCAQITKL 527 (1899)
T ss_pred eccCcCccccccccCcchhcccceeccCCceeEccCCcEEEecc-cEEEEeccCceEEEeccCCCCccC-ccccccccch
Confidence 222110 0000 0 011 1245678999999753 346677877765432211000111 111222110
Q ss_pred -C--CccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcC------CCC-------------CcceeeeeecCCe
Q 006913 183 -D--CYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDL------SSF-------------DKAFTLTPGNNGY 240 (626)
Q Consensus 183 -~--~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~------~s~-------------~~v~sI~~D~dG~ 240 (626)
+ -......++++-+|.|+|=. ++-|+.++... ++.-.... .+. -...+|++..+|.
T Consensus 528 ~~~~leWPT~LaV~Pmdnsl~Vld-~nvvlrit~~~-rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~ 605 (1899)
T KOG4659|consen 528 VDLQLEWPTSLAVDPMDNSLLVLD-TNVVLRITVVH-RVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA 605 (1899)
T ss_pred hheeeecccceeecCCCCeEEEee-cceEEEEccCc-cEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce
Confidence 0 01123456666678888864 44678887665 44432110 010 1124578889999
Q ss_pred EEEEEcCC
Q 006913 241 LYVTIPVR 248 (626)
Q Consensus 241 LwVGT~~g 248 (626)
|||+-.++
T Consensus 606 lyvaEsD~ 613 (1899)
T KOG4659|consen 606 LYVAESDG 613 (1899)
T ss_pred EEEEeccc
Confidence 99986543
No 122
>PHA02790 Kelch-like protein; Provisional
Probab=68.42 E-value=2.1e+02 Score=32.26 Aligned_cols=166 Identities=12% Similarity=0.090 Sum_probs=80.3
Q ss_pred CCeEEEEE--C-----CeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC---CeEEEEeCC
Q 006913 88 TGEVYIVA--E-----NRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG---RALFAFMTH 157 (626)
Q Consensus 88 dG~IwVgT--~-----ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~---gGL~a~d~~ 157 (626)
++.||+.. + ..+.+||+.++ .|....... . . .........+|.||+.... ..+.+||+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~-------~W~~~~~m~-~--~-r~~~~~v~~~~~iYviGG~~~~~sve~ydp~ 339 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISN-------NWIPIPPMN-S--P-RLYASGVPANNKLYVVGGLPNPTSVERWFHG 339 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCC-------EEEECCCCC-c--h-hhcceEEEECCEEEEECCcCCCCceEEEECC
Confidence 45676642 1 35788898875 454322111 0 0 1111223457889875321 336778874
Q ss_pred CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEE-cCC---CeEEEEeCCCCeEEEEEcCCC-CC-cce
Q 006913 158 GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYIS-NTQ---GELYSLSAHSPYFNWIQDLSS-FD-KAF 231 (626)
Q Consensus 158 G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIG-T~~---GgL~~ld~~tg~~~w~~~~~s-~~-~v~ 231 (626)
.. .|...+ +++ ... .. .+.+.- +|.||+- ..+ ..+.+||++++ .|..-.+. .. ...
T Consensus 340 ~n-~W~~~~---~l~------~~r--~~--~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~~~r~~~ 401 (480)
T PHA02790 340 DA-AWVNMP---SLL------KPR--CN--PAVASI--NNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTYYPHYKS 401 (480)
T ss_pred CC-eEEECC---CCC------CCC--cc--cEEEEE--CCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCCCccccc
Confidence 22 476422 111 000 00 112232 7899974 222 23567888765 48653221 11 111
Q ss_pred eeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC-CCCceeeEEEeeCCeEEEEE
Q 006913 232 TLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGP-LGSAEYAPVVDSNGWISVGS 289 (626)
Q Consensus 232 sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~-l~~~~sspvvD~dG~IWVGT 289 (626)
+++ -.+|.|||.. |...++|+.++ .|..-.+. ........++- +|.||+-.
T Consensus 402 ~~~-~~~~~IYv~G---G~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v~-~~~IYviG 453 (480)
T PHA02790 402 CAL-VFGRRLFLVG---RNAEFYCESSN--TWTLIDDPIYPRDNPELIIV-DNKLLLIG 453 (480)
T ss_pred eEE-EECCEEEEEC---CceEEecCCCC--cEeEcCCCCCCccccEEEEE-CCEEEEEC
Confidence 222 3478999963 45667887765 67643221 11112223333 67888843
No 123
>PF15102 TMEM154: TMEM154 protein family
Probab=67.87 E-value=3.4 Score=38.85 Aligned_cols=37 Identities=22% Similarity=0.483 Sum_probs=23.2
Q ss_pred CceeeeeeehhhHHHHHHHHhheeeEEEeecccccccc
Q 006913 392 NERAILLFLFFESVVLLVLAVLVRFCCIFWRKKKLQGQ 429 (626)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (626)
|.-..+++|++++|+||||+++|.|..+.-|+|| ++|
T Consensus 53 ~q~efiLmIlIP~VLLvlLLl~vV~lv~~~kRkr-~K~ 89 (146)
T PF15102_consen 53 SQLEFILMILIPLVLLVLLLLSVVCLVIYYKRKR-TKQ 89 (146)
T ss_pred CCcceEEEEeHHHHHHHHHHHHHHHheeEEeecc-cCC
Confidence 3334488999999999887776644333334444 344
No 124
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=67.07 E-value=6.4 Score=37.03 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=21.5
Q ss_pred hheeeEEEeeccccccccchHHHHHHhhh
Q 006913 412 VLVRFCCIFWRKKKLQGQHLGNFLEKRRS 440 (626)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (626)
+.-.=|..+|+.+---.--|-+||.||.|
T Consensus 24 ~cgiGcvwhwkhr~~~~ftLPkflqRRss 52 (158)
T PF11770_consen 24 LCGIGCVWHWKHRDSTRFTLPKFLQRRSS 52 (158)
T ss_pred HHhcceEEEeeccCccccchHHHHHhhhh
Confidence 33455778887666556689999999986
No 125
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.72 E-value=2.4e+02 Score=32.31 Aligned_cols=151 Identities=13% Similarity=0.166 Sum_probs=78.3
Q ss_pred EEecCCeEEEEE---CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC--C
Q 006913 84 VHGGTGEVYIVA---ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH--G 158 (626)
Q Consensus 84 ~iD~dG~IwVgT---~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~--G 158 (626)
+.+.+-+|.+-+ ..+|+.+|.+.++.. ..|.+.....-..-.+.....-.+ .-.-++|-.+++|+.+||. |
T Consensus 340 L~~~dsnlil~~~~~~~~l~klDIE~GKIV---eEWk~~~di~mv~~t~d~K~~Ql~-~e~TlvGLs~n~vfriDpRv~~ 415 (644)
T KOG2395|consen 340 LHRADSNLILMDGGEQDKLYKLDIERGKIV---EEWKFEDDINMVDITPDFKFAQLT-SEQTLVGLSDNSVFRIDPRVQG 415 (644)
T ss_pred hhccccceEeeCCCCcCcceeeecccceee---eEeeccCCcceeeccCCcchhccc-ccccEEeecCCceEEecccccC
Confidence 334455555543 579999999988642 245543320000000000001112 2234677778899999984 5
Q ss_pred c--EEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCC-Ccceeeee
Q 006913 159 Q--LLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSF-DKAFTLTP 235 (626)
Q Consensus 159 ~--~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~-~~v~sI~~ 235 (626)
+ +.|... .++ .. ..++ ++...-. +|.|.||+..|-|..||. .+...- ..+++. ..+..+-+
T Consensus 416 ~~kl~~~q~---kqy--~~-------k~nF-sc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~AK-TAlPgLG~~I~hVdv 479 (644)
T KOG2395|consen 416 KNKLAVVQS---KQY--ST-------KNNF-SCFATTE-SGYIVVGSLKGDIRLYDR-IGRRAK-TALPGLGDAIKHVDV 479 (644)
T ss_pred cceeeeeec---ccc--cc-------cccc-ceeeecC-CceEEEeecCCcEEeehh-hhhhhh-hcccccCCceeeEEe
Confidence 4 345321 111 11 1123 3444443 899999999988888876 332211 122332 23444555
Q ss_pred ecCCeEEEEEcCCCEEEEEE
Q 006913 236 GNNGYLYVTIPVRALVLALD 255 (626)
Q Consensus 236 D~dG~LwVGT~~gG~l~alD 255 (626)
..||.-.+||.. ..+..++
T Consensus 480 tadGKwil~Tc~-tyLlLi~ 498 (644)
T KOG2395|consen 480 TADGKWILATCK-TYLLLID 498 (644)
T ss_pred eccCcEEEEecc-cEEEEEE
Confidence 578888888864 3444443
No 126
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=64.72 E-value=2.1e+02 Score=31.05 Aligned_cols=27 Identities=7% Similarity=-0.040 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCeEEEEeCCCCeEEEEE
Q 006913 196 EGSIYISNTQGELYSLSAHSPYFNWIQ 222 (626)
Q Consensus 196 dG~LwIGT~~GgL~~ld~~tg~~~w~~ 222 (626)
+.++..|..+|-|..+|+++++.....
T Consensus 202 GKr~~tgy~dgti~~Wn~ktg~p~~~~ 228 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKTGQPLHKI 228 (399)
T ss_pred CceEEEEecCceEEEEecCCCceeEEe
Confidence 567888878899999999999887653
No 127
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=64.35 E-value=97 Score=32.00 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=53.1
Q ss_pred cceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeee-ecCCeEEEEEcCCCEEEEEECCCCcEEE
Q 006913 188 SVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTP-GNNGYLYVTIPVRALVLALDTSSGNILW 263 (626)
Q Consensus 188 sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~-D~dG~LwVGT~~gG~l~alD~~tG~~~w 263 (626)
.++.+|+.+|.|..+..++-+|++|.++|+++..+.. -.+.+.+++- ..++.|.-|.. +|.+-..|.+|++...
T Consensus 118 Nam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~~~~qilsG~E-DGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 118 NAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG-HTDYVHSVVGRNANGQILSGAE-DGTVRVWDTKTQKHVS 192 (325)
T ss_pred ceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC-CcceeeeeeecccCcceeecCC-CccEEEEeccccceeE
Confidence 4566775588888888899999999999998765432 1244555544 45778888875 4677777888887654
No 128
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=64.31 E-value=7.8 Score=34.54 Aligned_cols=64 Identities=14% Similarity=0.318 Sum_probs=37.3
Q ss_pred HHHHHHHhheeeEEEeeccccccccchHHHHHHhhhhhhhhhh---hhhhhHHHHHHHh-----hhhhhhHhhhhe
Q 006913 405 VVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKKKA---FDRSITELEKKVA-----EDAVANEVIKKS 472 (626)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~ 472 (626)
++++++++++-|.+..| .+++|+.++.+.++.++..++. +..+..+|+.+.. .+.+...++++|
T Consensus 4 ~~~vll~ll~~l~y~l~----~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~L 75 (105)
T PRK00888 4 LTLLLLALLVWLQYSLW----FGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNEL 75 (105)
T ss_pred HHHHHHHHHHHHHHHHh----ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHc
Confidence 45555666666666666 4778888888887765444433 3334444444433 355665566655
No 129
>PRK00178 tolB translocation protein TolB; Provisional
Probab=64.01 E-value=2.3e+02 Score=31.07 Aligned_cols=108 Identities=16% Similarity=0.259 Sum_probs=51.0
Q ss_pred eEEEcCCCeEEEEcCC---CeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCC--EEEEEECCCCcEEE
Q 006913 190 PVIDQCEGSIYISNTQ---GELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRA--LVLALDTSSGNILW 263 (626)
Q Consensus 190 pviD~~dG~LwIGT~~---GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG--~l~alD~~tG~~~w 263 (626)
+...+.+..|++.+.. ..||.++..+++............. +....|| .|++....++ .++.+|..+|....
T Consensus 292 ~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~--~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~ 369 (430)
T PRK00178 292 PFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNAR--PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI 369 (430)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccc--eEECCCCCEEEEEEccCCceEEEEEECCCCCEEE
Confidence 4443314456655432 3589999888765432211111111 2223344 4554443222 47778887776543
Q ss_pred EEecCCCCCceeeEEEeeCCe-EEEEEcC---CeEEEEcCCCCE
Q 006913 264 HKSVGPLGSAEYAPVVDSNGW-ISVGSLD---GLLYSFSPSGVL 303 (626)
Q Consensus 264 ~~~~~~l~~~~sspvvD~dG~-IWVGT~~---gGLy~~d~~g~~ 303 (626)
..... ....|...+||. |++.+.. ..|+.++.+|..
T Consensus 370 lt~~~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 370 LTDTS----LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV 409 (430)
T ss_pred ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 22211 112345555654 4444432 246666665543
No 130
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.29 E-value=2.1e+02 Score=30.46 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=63.3
Q ss_pred cceEEEcCCCeEEEEcCCC----eEEEEeCCCCeEEEEEcCCCCCc--cee-eeeecCCeEEEEEcCCCEEEEEECCCCc
Q 006913 188 SVPVIDQCEGSIYISNTQG----ELYSLSAHSPYFNWIQDLSSFDK--AFT-LTPGNNGYLYVTIPVRALVLALDTSSGN 260 (626)
Q Consensus 188 sspviD~~dG~LwIGT~~G----gL~~ld~~tg~~~w~~~~~s~~~--v~s-I~~D~dG~LwVGT~~gG~l~alD~~tG~ 260 (626)
+.++.|+-++.|+++-.+| |||.+|.++|+..+....++... +.. .+.+- .+.+- +...+.|+|..+|+
T Consensus 109 SdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~KG~~~~D~a~F~i-~~~~~---g~~~i~~~Dli~~~ 184 (339)
T PF09910_consen 109 SDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSLKGTLVHDYACFGI-NNFHK---GVSGIHCLDLISGK 184 (339)
T ss_pred hheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCcCceEeeeeEEEec-ccccc---CCceEEEEEccCCe
Confidence 4567776678899986654 89999999999988755433111 000 11121 22222 22478899988886
Q ss_pred EEEE-EecC--CCCCc----eeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEE
Q 006913 261 ILWH-KSVG--PLGSA----EYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKF 306 (626)
Q Consensus 261 ~~w~-~~~~--~l~~~----~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~ 306 (626)
.... +..+ ..+.. ....++...+++|.-. .||++..||- ++...+
T Consensus 185 ~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~-rGGi~vgnP~~~e~~~f 237 (339)
T PF09910_consen 185 WVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFV-RGGIFVGNPYNGEEFRF 237 (339)
T ss_pred EEEEecccccCCCCCceEeeccccEEEEeeeEEEEE-eccEEEeCCCCCCceeE
Confidence 5322 1111 00111 1112333355665544 6899999995 554333
No 131
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=61.53 E-value=3.3e+02 Score=32.08 Aligned_cols=99 Identities=14% Similarity=0.090 Sum_probs=51.8
Q ss_pred CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCcee
Q 006913 196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEY 275 (626)
Q Consensus 196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~s 275 (626)
++.+.-+.++|-|...+..+ ....... +....++++....++.+.|.+..++.+-..+ .+........+. -.+++
T Consensus 190 ~~~flScsNDg~Ir~w~~~g-e~l~~~~-ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~--~~e~~q~I~lPt-tsiWs 264 (745)
T KOG0301|consen 190 DSHFLSCSNDGSIRLWDLDG-EVLLEMH-GHTNFVYSISMALSDGLIVSTGEDRTLRIWK--KDECVQVITLPT-TSIWS 264 (745)
T ss_pred CCCeEeecCCceEEEEeccC-ceeeeee-ccceEEEEEEecCCCCeEEEecCCceEEEee--cCceEEEEecCc-cceEE
Confidence 44555555566566666644 4433222 1112355555444556666664444444443 223332223331 12344
Q ss_pred eEEEeeCCeEEEEEcCCeEEEEcCC
Q 006913 276 APVVDSNGWISVGSLDGLLYSFSPS 300 (626)
Q Consensus 276 spvvD~dG~IWVGT~~gGLy~~d~~ 300 (626)
.-+.. ||.|++|+.+|.|+.|..+
T Consensus 265 a~~L~-NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 265 AKVLL-NGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEee-CCCEEEeccCceEEEEEec
Confidence 33444 8999999999999988743
No 132
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=61.27 E-value=2.5e+02 Score=30.59 Aligned_cols=73 Identities=15% Similarity=0.167 Sum_probs=47.8
Q ss_pred EEEcCCCeEEEEcCC----------CeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe--EEEEEcCCCEEEEEECCC
Q 006913 191 VIDQCEGSIYISNTQ----------GELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY--LYVTIPVRALVLALDTSS 258 (626)
Q Consensus 191 viD~~dG~LwIGT~~----------GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~--LwVGT~~gG~l~alD~~t 258 (626)
.+.+.++++|+...+ +.|..+|..+++..-+...+. .+..++...||+ ||+.....+.+..+|..+
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 344337889995422 469999999988776555432 344566666665 555443346688899989
Q ss_pred CcEEEEE
Q 006913 259 GNILWHK 265 (626)
Q Consensus 259 G~~~w~~ 265 (626)
++.+-..
T Consensus 332 ~k~i~~i 338 (352)
T TIGR02658 332 GKELSSV 338 (352)
T ss_pred CeEEeee
Confidence 8877554
No 133
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=60.29 E-value=2.5e+02 Score=30.35 Aligned_cols=164 Identities=14% Similarity=0.184 Sum_probs=78.1
Q ss_pred eEEecCCeEEEEE---CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC-CeE--EEEeC
Q 006913 83 PVHGGTGEVYIVA---ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG-RAL--FAFMT 156 (626)
Q Consensus 83 p~iD~dG~IwVgT---~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~-gGL--~a~d~ 156 (626)
..++.+|++.++. ...++.|+...+++ .+.......+ ..+ ....+.-.+....|+.++- +-| +.||+
T Consensus 150 a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L-~~~~~~~v~~-----G~G-PRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 150 ANFTPDGRYLVVPDLGTDRIFLYDLDDGKL-TPADPAEVKP-----GAG-PRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred eeeCCCCCEEEEeecCCceEEEEEcccCcc-ccccccccCC-----CCC-cceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 3456788765554 36788887766543 1111111111 111 2233333444556666543 333 34455
Q ss_pred C-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCe-EEEEcCC---CeEEEEeCCCCeEEEEEcCCC-CCcc
Q 006913 157 H-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGS-IYISNTQ---GELYSLSAHSPYFNWIQDLSS-FDKA 230 (626)
Q Consensus 157 ~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~-LwIGT~~---GgL~~ld~~tg~~~w~~~~~s-~~~v 230 (626)
. |++.- .++ +..+ +.+..+.+-.+.+.+.+ +|+ ||+.+.. =.++.+|+.+|++......+. ....
T Consensus 223 ~~g~~~~-lQ~-i~tl------P~dF~g~~~~aaIhis~-dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~P 293 (346)
T COG2706 223 AVGKFEE-LQT-IDTL------PEDFTGTNWAAAIHISP-DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFP 293 (346)
T ss_pred CCceEEE-eee-eccC------ccccCCCCceeEEEECC-CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCC
Confidence 3 54321 111 0011 11222222224455665 454 7776542 156788999987765433221 1112
Q ss_pred eeeeeecCCeEEEEE-cC--CCEEEEEECCCCcEE
Q 006913 231 FTLTPGNNGYLYVTI-PV--RALVLALDTSSGNIL 262 (626)
Q Consensus 231 ~sI~~D~dG~LwVGT-~~--gG~l~alD~~tG~~~ 262 (626)
..+..+..|++.++. .. .-.++..|++||+..
T Consensus 294 R~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 294 RDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 233445556555543 22 245777888888764
No 134
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=59.42 E-value=2.9e+02 Score=30.84 Aligned_cols=193 Identities=11% Similarity=0.054 Sum_probs=101.7
Q ss_pred ccCeEEecCCeEEEEE--CCeEEEEEC-CCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEe
Q 006913 80 GTAPVHGGTGEVYIVA--ENRVLKVDL-LKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFM 155 (626)
Q Consensus 80 ~~sp~iD~dG~IwVgT--~ggL~~id~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d 155 (626)
+..+....+|.+.+.. +..|...|. ..+.. ..... .+.. .+.......+| .|.-|+.++-+...|
T Consensus 206 v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~----~~~l~------gH~~-~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 206 VSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN----LKTLK------GHST-YVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred eeeeEECCCCcEEEEecCCceEEEeeccCCCeE----EEEec------CCCC-ceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 4445556777755554 677777777 33211 11111 1222 33444444444 556677777777888
Q ss_pred CC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEE--EEEcCCCCC-cce
Q 006913 156 TH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFN--WIQDLSSFD-KAF 231 (626)
Q Consensus 156 ~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~--w~~~~~s~~-~v~ 231 (626)
.. |+..-.... +. .. .+......++..|+.+.+++-|..+|..++... -........ .+.
T Consensus 275 ~~~~~~~~~l~~------------hs---~~-is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 338 (456)
T KOG0266|consen 275 VRTGECVRKLKG------------HS---DG-ISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVT 338 (456)
T ss_pred ccCCeEEEeeec------------cC---Cc-eEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCcee
Confidence 65 665433200 00 11 133344432556778888999999999998743 111101111 344
Q ss_pred eeeeecCC-eEEEEEcCCCEEEEEECCCCcEEEEEecCCCC-CceeeEEEe-eCCeEEEEEcCCeEEEEcCC
Q 006913 232 TLTPGNNG-YLYVTIPVRALVLALDTSSGNILWHKSVGPLG-SAEYAPVVD-SNGWISVGSLDGLLYSFSPS 300 (626)
Q Consensus 232 sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~-~~~sspvvD-~dG~IWVGT~~gGLy~~d~~ 300 (626)
.+....+| .+++++. ++.+-..|...+...-.+...... ..+..+... ..-.++.|..++.|+.++..
T Consensus 339 ~~~fsp~~~~ll~~~~-d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 339 SVQFSPNGKYLLSASL-DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred EEEECCCCcEEEEecC-CCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 55555566 5666664 446655666666554332211111 011122222 23468889999999999975
No 135
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=59.37 E-value=3.9e+02 Score=32.22 Aligned_cols=108 Identities=12% Similarity=0.079 Sum_probs=64.0
Q ss_pred ceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCC--CCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEe
Q 006913 189 VPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLS--SFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKS 266 (626)
Q Consensus 189 spviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~--s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~ 266 (626)
+.+++.|++-.+||...|-|-.||.++|-.+-.+... ....+..++.|.-+++.|.+...|.+...|-+++.+.-...
T Consensus 453 av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~ 532 (910)
T KOG1539|consen 453 AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR 532 (910)
T ss_pred EEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec
Confidence 4556668888999999999999999998655433211 12346778888878888877555666656655554433322
Q ss_pred cCCCCCceeeEEEee-CCeEEEEEcCCeEEEEcC
Q 006913 267 VGPLGSAEYAPVVDS-NGWISVGSLDGLLYSFSP 299 (626)
Q Consensus 267 ~~~l~~~~sspvvD~-dG~IWVGT~~gGLy~~d~ 299 (626)
.+ .....++... .+.+-++..+-.|..+|.
T Consensus 533 l~---~~~~~iv~hr~s~l~a~~~ddf~I~vvD~ 563 (910)
T KOG1539|consen 533 LG---SSITGIVYHRVSDLLAIALDDFSIRVVDV 563 (910)
T ss_pred cC---CCcceeeeeehhhhhhhhcCceeEEEEEc
Confidence 22 1112222221 234444445556666664
No 136
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=59.37 E-value=2.7e+02 Score=30.38 Aligned_cols=188 Identities=7% Similarity=0.028 Sum_probs=95.8
Q ss_pred ccCeEEecCCeEEEEE---CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC
Q 006913 80 GTAPVHGGTGEVYIVA---ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT 156 (626)
Q Consensus 80 ~~sp~iD~dG~IwVgT---~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~ 156 (626)
+.++.+|. ++-|++| +..+-..|..++++ +.... .....+-+..+....-.||-+..++.+-|+|.
T Consensus 154 Vr~vavdP-~n~wf~tgs~DrtikIwDlatg~L-----kltlt-----Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 154 VRSVAVDP-GNEWFATGSADRTIKIWDLATGQL-----KLTLT-----GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred EEEEeeCC-CceeEEecCCCceeEEEEcccCeE-----EEeec-----chhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 44556654 5778876 56677778888742 22211 11122333445556667888888888889997
Q ss_pred C-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceee-e
Q 006913 157 H-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTL-T 234 (626)
Q Consensus 157 ~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI-~ 234 (626)
. .+++-.| .+. +++ ..++.+.+-.+.|.-|..+.-+...|.++........ +-...+..+ +
T Consensus 223 e~nkvIR~Y------hGH-------lS~---V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~ 285 (460)
T KOG0285|consen 223 EYNKVIRHY------HGH-------LSG---VYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMC 285 (460)
T ss_pred hhhhhHHHh------ccc-------cce---eEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEe
Confidence 5 5443222 010 000 0111111112346666666666777887754433321 111122222 3
Q ss_pred eecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEc
Q 006913 235 PGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFS 298 (626)
Q Consensus 235 ~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d 298 (626)
...|+.++-|+.+ +.+-..|...|+..-..... .....+++..++..++.....+.+-+++
T Consensus 286 ~~~dpqvit~S~D-~tvrlWDl~agkt~~tlt~h--kksvral~lhP~e~~fASas~dnik~w~ 346 (460)
T KOG0285|consen 286 QPTDPQVITGSHD-STVRLWDLRAGKTMITLTHH--KKSVRALCLHPKENLFASASPDNIKQWK 346 (460)
T ss_pred ecCCCceEEecCC-ceEEEeeeccCceeEeeecc--cceeeEEecCCchhhhhccCCccceecc
Confidence 3357889988854 56666676667654332111 1123345555555555554444455554
No 137
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=58.67 E-value=3e+02 Score=30.75 Aligned_cols=61 Identities=10% Similarity=0.131 Sum_probs=34.7
Q ss_pred CeEEEEECCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEE-EEEEcCCeEEEEEcCCeEEEEeC-C-CcEEEEE
Q 006913 89 GEVYIVAENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGI-AVSTSSSSVYINVKGRALFAFMT-H-GQLLWSA 164 (626)
Q Consensus 89 G~IwVgT~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s-~~~d~dG~LwIgT~~gGL~a~d~-~-G~~~w~~ 164 (626)
.+||++-++.+|.+++..... ... .+++-.+ ...-.++.|-|+.. +|++.++. + .+.+|.+
T Consensus 112 ~~iy~s~~~KvYvi~~~pp~~------~~i--------~~~i~ecg~l~l~~nvL~i~~~-~git~yn~~e~~k~vw~~ 175 (603)
T COG4880 112 ERIYVSVNGKVYVIDKNPPLL------ETI--------DCPIPECGILALGGNVLAIGEV-GGITLYNLYESSKKVWVY 175 (603)
T ss_pred cEEEEEeCCeEEEEcCCCchh------hhc--------ccCCccceEEEEcCcEEEEEEe-CCEEEEEeccccceeEEE
Confidence 457777688899988765311 000 0111111 12223445666654 68999986 4 7888986
No 138
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=58.44 E-value=3.4e+02 Score=31.30 Aligned_cols=183 Identities=13% Similarity=0.034 Sum_probs=105.9
Q ss_pred CCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEEC
Q 006913 88 TGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAG 165 (626)
Q Consensus 88 dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~ 165 (626)
+|.+..++ +.-|..++..++.. ..-.. ..+.+.+.+......++.++.|+.+.-+...|. +|...-.+.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~------i~~~l---~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~ 288 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYL------ILTRL---VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ 288 (537)
T ss_pred cCeEEecCCCceeEEeecccceE------EEeec---cCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec
Confidence 56666666 56666777766531 11101 112233333333333667777877777777775 366543320
Q ss_pred CcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEE
Q 006913 166 PVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTI 245 (626)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT 245 (626)
+ . .... -.++..+..+.-|+.+..|.+.+..++........ ....|.++..+ ++.++.|+
T Consensus 289 ------g-h---------~stv--~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~-~~~lvsgs 348 (537)
T KOG0274|consen 289 ------G-H---------TSSV--RCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD-EPLLVSGS 348 (537)
T ss_pred ------C-C---------CceE--EEEEccCceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec-CCEEEEEe
Confidence 0 0 0011 12232134444456788899999988776554321 22346677665 66788888
Q ss_pred cCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCCCC
Q 006913 246 PVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPSGV 302 (626)
Q Consensus 246 ~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~g~ 302 (626)
.+ +.+-..|..+++.+...... ...+.+++++....++-|+.++.+-.+|..+.
T Consensus 349 ~d-~~v~VW~~~~~~cl~sl~gH--~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 349 YD-GTVKVWDPRTGKCLKSLSGH--TGRVYSLIVDSENRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred cC-ceEEEEEhhhceeeeeecCC--cceEEEEEecCcceEEeeeeccceEeecCCch
Confidence 65 57777888888877543221 12345567774478888999988999987643
No 139
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=57.91 E-value=3.1e+02 Score=30.67 Aligned_cols=109 Identities=16% Similarity=0.240 Sum_probs=56.6
Q ss_pred EecCCeEEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEe-CC-CcEE
Q 006913 85 HGGTGEVYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFM-TH-GQLL 161 (626)
Q Consensus 85 iD~dG~IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d-~~-G~~~ 161 (626)
.+...++|.++ +.++-..+.+...+ +.-.|+ +...+.+.-.....-.+=+|..+.-+-.+. ++ .+++
T Consensus 253 r~gt~~lys~s~Drsvkvw~~~~~s~----vetlyG------Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli 322 (479)
T KOG0299|consen 253 RKGTSELYSASADRSVKVWSIDQLSY----VETLYG------HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI 322 (479)
T ss_pred ecCccceeeeecCCceEEEehhHhHH----HHHHhC------CccceeeechhcccceEEeccccceeEEEeccccceee
Confidence 34456788876 77777776554211 111122 122344444444555555554444443343 22 4443
Q ss_pred EEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEE
Q 006913 162 WSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQ 222 (626)
Q Consensus 162 w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~ 222 (626)
+.. . + ..+-....++ +..+..|+.+|.|+..+.-..+.....
T Consensus 323 frg-~----------~------~sidcv~~In--~~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 323 FRG-G----------E------GSIDCVAFIN--DEHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred eeC-C----------C------CCeeeEEEec--ccceeeccCCceEEEeeecccCceeEe
Confidence 321 0 0 1122223455 678889998998888877776666554
No 140
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=57.49 E-value=1.3e+02 Score=30.68 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=13.3
Q ss_pred eEEecCCeEEEEECCeEEEE
Q 006913 83 PVHGGTGEVYIVAENRVLKV 102 (626)
Q Consensus 83 p~iD~dG~IwVgT~ggL~~i 102 (626)
++...+|.||...++++|..
T Consensus 39 i~~~P~g~lY~I~~~~lY~~ 58 (229)
T PF14517_consen 39 IAAGPNGRLYAIRNDGLYRG 58 (229)
T ss_dssp EEE-TTS-EEEEETTEEEEE
T ss_pred EEEcCCceEEEEECCceEEe
Confidence 44556788888777788877
No 141
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=56.85 E-value=3.7e+02 Score=31.21 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=89.1
Q ss_pred eCCEEEEEe--C-C-----cEEEEcC-CCCEEEEEeCC-CCCCcccCeEEecCCeEEEEE--C-----CeEEEEECCCCc
Q 006913 46 EDGKIYACS--E-K-----TLFAFES-NGTIAWSLDLD-FTCNIGTAPVHGGTGEVYIVA--E-----NRVLKVDLLKIG 108 (626)
Q Consensus 46 ~dG~IwIgS--d-g-----gL~a~d~-~G~~~W~~~~~-~~~~i~~sp~iD~dG~IwVgT--~-----ggL~~id~~~~~ 108 (626)
-+|.||+.. + + .+.+||+ .++ |....+ .......+.. .-+|.||+.. + +.+-+||+.+.
T Consensus 331 ~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~- 406 (571)
T KOG4441|consen 331 LNGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPVAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTN- 406 (571)
T ss_pred ECCEEEEEccccCCCcccceEEEecCCCCc--eeccCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCCC-
Confidence 578999843 4 2 4678888 444 854221 1111111222 2368888854 2 34778888775
Q ss_pred cccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc-------CCeEEEEeCCCcEEEEECCcccccccccccccCC
Q 006913 109 TSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK-------GRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTD 181 (626)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~-------~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l 181 (626)
.|..-.. .....-+..+..-+|.||+... -.-+.+|||... .|...+ +... ..
T Consensus 407 ------~W~~va~----m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~-~W~~~~---~M~~----~R-- 466 (571)
T KOG4441|consen 407 ------KWTPVAP----MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN-TWTLIA---PMNT----RR-- 466 (571)
T ss_pred ------cccccCC----CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC-ceeecC---Cccc----cc--
Confidence 4432211 1111223345567889998532 134678898633 486422 1110 00
Q ss_pred CCCccccceEEEcCCCeEEEEcC-CC-----eEEEEeCCCCeEEEEEcCCC--CCcceeeeeecCCeEEEEEc-CC----
Q 006913 182 VDCYFTSVPVIDQCEGSIYISNT-QG-----ELYSLSAHSPYFNWIQDLSS--FDKAFTLTPGNNGYLYVTIP-VR---- 248 (626)
Q Consensus 182 ~~~~i~sspviD~~dG~LwIGT~-~G-----gL~~ld~~tg~~~w~~~~~s--~~~v~sI~~D~dG~LwVGT~-~g---- 248 (626)
.. ...+.- ++.||+-.. ++ .+.+||+.+.+ |..-.+. ......++. .++.||+... ++
T Consensus 467 --~~--~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~--W~~v~~m~~~rs~~g~~~-~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 467 --SG--FGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQ--WTMVAPMTSPRSAVGVVV-LGGKLYAVGGFDGNNNL 537 (571)
T ss_pred --cc--ceEEEE--CCEEEEECCccCCCccceEEEEcCCCCc--eeEcccCccccccccEEE-ECCEEEEEecccCcccc
Confidence 11 113333 688886433 32 27789998764 6532211 111112222 3677777532 11
Q ss_pred CEEEEEECCCC
Q 006913 249 ALVLALDTSSG 259 (626)
Q Consensus 249 G~l~alD~~tG 259 (626)
..+-++|+.++
T Consensus 538 ~~ve~ydp~~d 548 (571)
T KOG4441|consen 538 NTVECYDPETD 548 (571)
T ss_pred ceeEEcCCCCC
Confidence 23555666554
No 142
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=55.87 E-value=5.6 Score=26.56 Aligned_cols=12 Identities=50% Similarity=0.750 Sum_probs=8.7
Q ss_pred ccchHHHHHHhh
Q 006913 428 GQHLGNFLEKRR 439 (626)
Q Consensus 428 ~~~~~~~~~~~~ 439 (626)
+.-|+.|||||.
T Consensus 5 K~SLqRFLeKRK 16 (27)
T PF09425_consen 5 KASLQRFLEKRK 16 (27)
T ss_dssp -HHHHHHHHHH-
T ss_pred HHHHHHHHHHHH
Confidence 456889999996
No 143
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=55.70 E-value=25 Score=32.44 Aligned_cols=51 Identities=20% Similarity=0.368 Sum_probs=33.9
Q ss_pred HHHhheeeEEEeecccccccc------chHH-------HHHHh-hhhhhhhhhhhhhhHHHHHHH
Q 006913 409 VLAVLVRFCCIFWRKKKLQGQ------HLGN-------FLEKR-RSLQLKKKAFDRSITELEKKV 459 (626)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~------~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~ 459 (626)
+.+|+|=+|++||+-=||-|- +|.+ =||+= -+|+.-||.|..+|-.|..|-
T Consensus 13 a~~gavGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~kl 77 (126)
T PF07889_consen 13 AAIGAVGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKL 77 (126)
T ss_pred HHHHHHHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 566778999999987776542 2222 22221 177888999999898887443
No 144
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=55.29 E-value=3.5e+02 Score=30.50 Aligned_cols=19 Identities=5% Similarity=0.041 Sum_probs=13.8
Q ss_pred ceEEEEEEecCC-cEEEEEe
Q 006913 320 PYWFHLLGPSIG-LKAILCL 338 (626)
Q Consensus 320 p~V~~Il~DsdG-~IwI~T~ 338 (626)
..|+.+.+..|| .||+.|.
T Consensus 405 ~RiRdv~~~pDg~~iy~~td 424 (454)
T TIGR03606 405 NRYRDVIASPDGNVLYVATD 424 (454)
T ss_pred CeeEEEEECCCCCEEEEEEc
Confidence 456778888886 7887765
No 145
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=54.41 E-value=2.4e+02 Score=30.18 Aligned_cols=109 Identities=19% Similarity=0.147 Sum_probs=61.6
Q ss_pred CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-CCcceeeeee--cCCeEEEEEcCCCEEEEEECCCCcEEEEEecCC--C
Q 006913 196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSS-FDKAFTLTPG--NNGYLYVTIPVRALVLALDTSSGNILWHKSVGP--L 270 (626)
Q Consensus 196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-~~~v~sI~~D--~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~--l 270 (626)
+..|.-++.+|.+-.++.+++...-.....+ ...+.++..- +-..+.|.. ....+|.++ ..|.+...+..+. .
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn-~qGQvVrsfsSGkREg 437 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMN-MQGQVVRSFSSGKREG 437 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEe-ccceEEeeeccCCccC
Confidence 5556666678878888877765443322111 1122222221 222455554 345677777 4566665554331 1
Q ss_pred CCceeeEEEeeCCeEEEEEcCCeEEEEcC-CCCEEEE
Q 006913 271 GSAEYAPVVDSNGWISVGSLDGLLYSFSP-SGVLNKF 306 (626)
Q Consensus 271 ~~~~sspvvD~dG~IWVGT~~gGLy~~d~-~g~~~~~ 306 (626)
+.++++.+--+..+||....++-||||+. .|+....
T Consensus 438 GdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t 474 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT 474 (508)
T ss_pred CceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence 33455444445568999999999999986 4665543
No 146
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=53.67 E-value=40 Score=22.27 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=16.4
Q ss_pred ceeeeeecCCeEEEEEcCCCEEE
Q 006913 230 AFTLTPGNNGYLYVTIPVRALVL 252 (626)
Q Consensus 230 v~sI~~D~dG~LwVGT~~gG~l~ 252 (626)
...++.+.+|+|||+...+..+.
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEE
Confidence 34677888999999876554443
No 147
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=52.81 E-value=2e+02 Score=30.62 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=52.4
Q ss_pred eEEEcCCCeEEEEcCC-------CeEEEEeCCCCeEEEEEcCC--------------CCCcceeeeeecCCe-EEEEEcC
Q 006913 190 PVIDQCEGSIYISNTQ-------GELYSLSAHSPYFNWIQDLS--------------SFDKAFTLTPGNNGY-LYVTIPV 247 (626)
Q Consensus 190 pviD~~dG~LwIGT~~-------GgL~~ld~~tg~~~w~~~~~--------------s~~~v~sI~~D~dG~-LwVGT~~ 247 (626)
+++.. +|.+||+... ..|+.++.++ .+.-....+ .+...-+++...||+ ||++...
T Consensus 90 i~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~G-~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 90 IAVPP-DGSFWISSEGGRTGGIPPRIRRFDLDG-RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred eEEec-CCCEEEEeCCccCCCCCCEEEEECCCC-cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 34443 8889998753 4688888874 442221111 112244677777886 9998642
Q ss_pred C---------------CEEEEEECCC-Cc--EEEEEecCC-----CCCceeeEEEeeCCeEEEE
Q 006913 248 R---------------ALVLALDTSS-GN--ILWHKSVGP-----LGSAEYAPVVDSNGWISVG 288 (626)
Q Consensus 248 g---------------G~l~alD~~t-G~--~~w~~~~~~-----l~~~~sspvvD~dG~IWVG 288 (626)
. ..++.+|..+ +. ..|.+...+ ...-++.++..+++.++|=
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 2466777665 32 233344332 1122444555556666664
No 148
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=50.82 E-value=85 Score=35.09 Aligned_cols=92 Identities=15% Similarity=0.068 Sum_probs=51.6
Q ss_pred CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCcee
Q 006913 196 EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEY 275 (626)
Q Consensus 196 dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~s 275 (626)
+-.+.-++++.-|-..|.++|+..-....+......-.-+|..+.+.+|+ .++.+...|..+|+++..+... ++ .+.
T Consensus 270 g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~-sd~ki~~wDiRs~kvvqeYd~h-Lg-~i~ 346 (503)
T KOG0282|consen 270 GTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGG-SDKKIRQWDIRSGKVVQEYDRH-LG-AIL 346 (503)
T ss_pred CCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEec-CCCcEEEEeccchHHHHHHHhh-hh-hee
Confidence 55566667788888899999988765543321111112334334455555 4578888998888876433211 11 123
Q ss_pred eEEEeeCCeEEEEEc
Q 006913 276 APVVDSNGWISVGSL 290 (626)
Q Consensus 276 spvvD~dG~IWVGT~ 290 (626)
++..-++|.-+|.|.
T Consensus 347 ~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 347 DITFVDEGRRFISSS 361 (503)
T ss_pred eeEEccCCceEeeec
Confidence 333333555555543
No 149
>PLN00181 protein SPA1-RELATED; Provisional
Probab=50.66 E-value=5.2e+02 Score=31.05 Aligned_cols=175 Identities=10% Similarity=0.057 Sum_probs=85.6
Q ss_pred CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCC-eEEEEEcCCeEEEEeCC-CcEEEEECCccccccc
Q 006913 96 ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSS-SVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGY 173 (626)
Q Consensus 96 ~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG-~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~ 173 (626)
++.|..+|..++.. ...+. .....+........++ .|..|+.++.+..+|.. +...-....
T Consensus 554 Dg~v~lWd~~~~~~-----~~~~~-----~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~------- 616 (793)
T PLN00181 554 EGVVQVWDVARSQL-----VTEMK-----EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT------- 616 (793)
T ss_pred CCeEEEEECCCCeE-----EEEec-----CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-------
Confidence 67777788776421 11111 1122233333322344 45667777778888865 554332200
Q ss_pred ccccccCCCCCccccceEE-EcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEE
Q 006913 174 RQGCTKTDVDCYFTSVPVI-DQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVL 252 (626)
Q Consensus 174 ~~~~~~~l~~~~i~sspvi-D~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~ 252 (626)
. ..+ .+... ...+..|..|+.+|.|+.+|.+++........+....+..+.....+.|..++ .++.+.
T Consensus 617 ~---------~~v-~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s-~D~~ik 685 (793)
T PLN00181 617 K---------ANI-CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSS-TDNTLK 685 (793)
T ss_pred C---------CCe-EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEE-CCCEEE
Confidence 0 011 11122 11144577788889999999876542111111111234444333234555555 345676
Q ss_pred EEECCCC------cEEEEEecCCCCCceeeEEEee-CCeEEEEEcCCeEEEEcCC
Q 006913 253 ALDTSSG------NILWHKSVGPLGSAEYAPVVDS-NGWISVGSLDGLLYSFSPS 300 (626)
Q Consensus 253 alD~~tG------~~~w~~~~~~l~~~~sspvvD~-dG~IWVGT~~gGLy~~d~~ 300 (626)
..|...+ ..+...... ......+..+. ++.|..|+.++.|+.++..
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred EEeCCCCccccCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 6775432 122221111 11222333443 3567778889999999864
No 150
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=50.63 E-value=3.7e+02 Score=29.34 Aligned_cols=58 Identities=7% Similarity=0.020 Sum_probs=36.5
Q ss_pred CCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CCEEEEee
Q 006913 248 RALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GVLNKFSK 308 (626)
Q Consensus 248 gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~~~~~~~ 308 (626)
.|.+..+|..+-+++....... . +..+.......|+.++.+|.|+.+|.. |+.+..+.
T Consensus 307 dG~i~iyD~a~~~~R~~c~he~--~-V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~ 365 (399)
T KOG0296|consen 307 DGTIAIYDLAASTLRHICEHED--G-VTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYT 365 (399)
T ss_pred cceEEEEecccchhheeccCCC--c-eEEEEEcCcchheeeccCceEEeeeccccceEEEEe
Confidence 3566667765555544433331 1 333444445789999999999999975 77665443
No 151
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=49.83 E-value=1.3e+02 Score=30.62 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=32.1
Q ss_pred eeeeeEEeeCCEEEEEe-CCcEEEEcC--CCCEEEEE----eC-CCCCCcccCeEEecCCeEEEEECCe-EEEE
Q 006913 38 RLSKPLIGEDGKIYACS-EKTLFAFES--NGTIAWSL----DL-DFTCNIGTAPVHGGTGEVYIVAENR-VLKV 102 (626)
Q Consensus 38 ~~Sspvid~dG~IwIgS-dggL~a~d~--~G~~~W~~----~~-~~~~~i~~sp~iD~dG~IwVgT~gg-L~~i 102 (626)
.+...+++..|.||.-+ ++.||+... ++...|.. .. ....+....++.+.+|.||..+.+| +++.
T Consensus 82 ~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~dg~~~~~ 155 (229)
T PF14517_consen 82 SFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPDGRLYRR 155 (229)
T ss_dssp G-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETTE-EEEE
T ss_pred ceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCCCceEEe
Confidence 44466777788888766 456777765 55555632 01 1111223456667888888877444 6655
No 152
>PHA03098 kelch-like protein; Provisional
Probab=49.33 E-value=4.4e+02 Score=29.83 Aligned_cols=106 Identities=11% Similarity=0.114 Sum_probs=51.8
Q ss_pred eCCEEEEEe--C-----CcEEEEcCCCCEEEEEeCCCCCCcccCeEEecCCeEEEEEC--------CeEEEEECCCCccc
Q 006913 46 EDGKIYACS--E-----KTLFAFESNGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVAE--------NRVLKVDLLKIGTS 110 (626)
Q Consensus 46 ~dG~IwIgS--d-----ggL~a~d~~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT~--------ggL~~id~~~~~~~ 110 (626)
.+|.||+-. + +.+.+||+... .|....+.........+..-+|.||+..+ +.+.+||+.++
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~--- 416 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGES-KWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN--- 416 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCC-ceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC---
Confidence 578898833 2 24678887322 46543221111111112224678988531 34788898875
Q ss_pred cceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcC---------CeEEEEeCCCcEEEEE
Q 006913 111 ESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKG---------RALFAFMTHGQLLWSA 164 (626)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~---------gGL~a~d~~G~~~w~~ 164 (626)
.|...... +. ..........++.||+.... ..+++||+... .|..
T Consensus 417 ----~W~~~~~~-p~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~-~W~~ 470 (534)
T PHA03098 417 ----KWSKGSPL-PI---SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN-KWTE 470 (534)
T ss_pred ----eeeecCCC-Cc---cccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCC-ceee
Confidence 45332111 10 01111223457788874211 12788887532 4764
No 153
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=47.05 E-value=4.5e+02 Score=29.33 Aligned_cols=190 Identities=17% Similarity=0.109 Sum_probs=91.3
Q ss_pred eCCEEEEE-e-CCcEEEEcC-CC-CEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEec
Q 006913 46 EDGKIYAC-S-EKTLFAFES-NG-TIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYG 119 (626)
Q Consensus 46 ~dG~IwIg-S-dggL~a~d~-~G-~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~ 119 (626)
.+|.+.++ + |..+..+|. .+ ...-.+. +. ...+.+..+..+|++.+.. ++.+...|..++.. .-.+
T Consensus 213 ~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~-gH-~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~-----~~~l- 284 (456)
T KOG0266|consen 213 PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK-GH-STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC-----VRKL- 284 (456)
T ss_pred CCCcEEEEecCCceEEEeeccCCCeEEEEec-CC-CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE-----EEee-
Confidence 45544443 3 445666665 33 3322221 11 1234566666777766654 67788888887531 1111
Q ss_pred CCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeCC-CcEE--EEECCcccccccccccccCCCCCccccceEEEcCC
Q 006913 120 TGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMTH-GQLL--WSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCE 196 (626)
Q Consensus 120 ~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~~-G~~~--w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~d 196 (626)
..+...+........+..|+.++.++-+..+|.. |... -.... . .. .. ........+..
T Consensus 285 ----~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-------~----~~--~~-~~~~~~fsp~~ 346 (456)
T KOG0266|consen 285 ----KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-------A----EN--SA-PVTSVQFSPNG 346 (456)
T ss_pred ----eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC-------C----CC--CC-ceeEEEECCCC
Confidence 1122333333333445557777777778888975 6532 11100 0 00 00 01223333324
Q ss_pred CeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCC--cceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEE
Q 006913 197 GSIYISNTQGELYSLSAHSPYFNWIQDLSSFD--KAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNIL 262 (626)
Q Consensus 197 G~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~--~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~ 262 (626)
..|+.++.++-+..+|...+...-........ ..+.......| .++.|. ..+.++..|..++..+
T Consensus 347 ~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~-~d~~v~~~~~~s~~~~ 414 (456)
T KOG0266|consen 347 KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS-EDGSVYVWDSSSGGIL 414 (456)
T ss_pred cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEe-CCceEEEEeCCccchh
Confidence 55777777777777777766554332211111 11111112234 355555 3467777776665443
No 154
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=46.77 E-value=4.2e+02 Score=28.85 Aligned_cols=189 Identities=16% Similarity=0.194 Sum_probs=104.8
Q ss_pred CEEEEEe--CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCC-eEEEEE----CCeEEEEECCCCccccceeEEEec
Q 006913 48 GKIYACS--EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTG-EVYIVA----ENRVLKVDLLKIGTSESATQVFYG 119 (626)
Q Consensus 48 G~IwIgS--dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG-~IwVgT----~ggL~~id~~~~~~~~~~~~~~~~ 119 (626)
.++|+.+ .+.+..+|. +.+..-....+. .-..+..+.++ .+|++. ++.+..+|..+++. ... ..
T Consensus 86 ~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~---~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~----~~~-~~ 157 (381)
T COG3391 86 NKVYVTTGDSNTVSVIDTATNTVLGSIPVGL---GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV----TAT-IP 157 (381)
T ss_pred CeEEEecCCCCeEEEEcCcccceeeEeeecc---CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE----EEE-Ee
Confidence 4488876 567888885 333322222221 22344556655 799985 26788899887642 112 11
Q ss_pred CCCCCCCCCCeeEEEEEEcCCe-EEEEE-cCCeEEEEeCCCcEEEEECCcccccccccccccCCCCCccccceEEEcCCC
Q 006913 120 TGSGKGGTGAIAGIAVSTSSSS-VYINV-KGRALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEG 197 (626)
Q Consensus 120 ~~~~~~~~~~~I~s~~~d~dG~-LwIgT-~~gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG 197 (626)
.. .. ... +..+.+|. +|+.. ..+-|..+|.++..+|. .......+ ... ....+.++..+.
T Consensus 158 vG-----~~-P~~-~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~--------~~~--~P~~i~v~~~g~ 219 (381)
T COG3391 158 VG-----NT-PTG-VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVG--------VGT--GPAGIAVDPDGN 219 (381)
T ss_pred cC-----CC-cce-EEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccc--------cCC--CCceEEECCCCC
Confidence 11 01 122 33445554 99986 34678888987666663 11000000 000 112345665245
Q ss_pred eEEEEcCC---CeEEEEeCCCCeEEEE-EcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEE
Q 006913 198 SIYISNTQ---GELYSLSAHSPYFNWI-QDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILW 263 (626)
Q Consensus 198 ~LwIGT~~---GgL~~ld~~tg~~~w~-~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w 263 (626)
.+|+.... +.+..+|..++...+. ...... ....+..+.+| .+|+.....+.+..+|..+....-
T Consensus 220 ~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 220 RVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred EEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 58887664 4899999999888765 222222 33445566666 577765555788888876665543
No 155
>PRK02889 tolB translocation protein TolB; Provisional
Probab=46.76 E-value=4.3e+02 Score=29.06 Aligned_cols=109 Identities=18% Similarity=0.272 Sum_probs=50.9
Q ss_pred eEEEcCCCeEEEEcCC---CeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCC--EEEEEECCCCcEEE
Q 006913 190 PVIDQCEGSIYISNTQ---GELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRA--LVLALDTSSGNILW 263 (626)
Q Consensus 190 pviD~~dG~LwIGT~~---GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG--~l~alD~~tG~~~w 263 (626)
+...+.+..|++.+.. ..||.++..++...-....+... ..+....||+ |+..+..++ .++.+|..+|....
T Consensus 289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~--~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYN--TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA 366 (427)
T ss_pred eEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCc--CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence 4444313345544332 25888887776543222111111 1223344563 333332222 57778877777653
Q ss_pred EEecCCCCCceeeEEEeeCCe-EEEEEcCC---eEEEEcCCCCEE
Q 006913 264 HKSVGPLGSAEYAPVVDSNGW-ISVGSLDG---LLYSFSPSGVLN 304 (626)
Q Consensus 264 ~~~~~~l~~~~sspvvD~dG~-IWVGT~~g---GLy~~d~~g~~~ 304 (626)
..... ....|...+||. |++.+..+ .|+.++.+|+..
T Consensus 367 lt~~~----~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~ 407 (427)
T PRK02889 367 LTDTT----RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIK 407 (427)
T ss_pred ccCCC----CccCceECCCCCEEEEEEecCCCEEEEEEECCCCce
Confidence 32111 123455555654 44444332 366766666544
No 156
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=46.47 E-value=3.3e+02 Score=27.66 Aligned_cols=152 Identities=13% Similarity=0.059 Sum_probs=79.8
Q ss_pred cCCeEEEEE----CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeE-EEEeCC-CcE
Q 006913 87 GTGEVYIVA----ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRAL-FAFMTH-GQL 160 (626)
Q Consensus 87 ~dG~IwVgT----~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL-~a~d~~-G~~ 160 (626)
.+|.++.+| ...|...|..+++ ..+.-...+ ....+--....++.+|.-|+..|+ +.+|++ -+.
T Consensus 54 ~~g~i~esTG~yg~S~ir~~~L~~gq-----~~~s~~l~~-----~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~ 123 (262)
T COG3823 54 LDGHILESTGLYGFSKIRVSDLTTGQ-----EIFSEKLAP-----DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE 123 (262)
T ss_pred eCCEEEEeccccccceeEEEeccCce-----EEEEeecCC-----ccccccceeeccceEEEEEeccceeEEEChHHhhh
Confidence 356788877 2467778887664 222211110 111121223457789999988777 567764 222
Q ss_pred EEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEE--cCCC--CCcceeeeee
Q 006913 161 LWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQ--DLSS--FDKAFTLTPG 236 (626)
Q Consensus 161 ~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~--~~~s--~~~v~sI~~D 236 (626)
+-.+ .|. | .. ..+..| +.+||.+....-|+..||++-...-.. ...+ .....- .+-
T Consensus 124 lg~~-------~y~-G------eG---WgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNE-LE~ 183 (262)
T COG3823 124 LGRF-------SYE-G------EG---WGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNE-LEW 183 (262)
T ss_pred hccc-------ccC-C------cc---eeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccc-eee
Confidence 1111 111 0 01 224455 567999887777888888763222111 1111 111111 122
Q ss_pred cCCeEEEEEcCCCEEEEEECCCCcEEEEEecC
Q 006913 237 NNGYLYVTIPVRALVLALDTSSGNILWHKSVG 268 (626)
Q Consensus 237 ~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~ 268 (626)
.||.+|.-......+..+++.+|++.-.....
T Consensus 184 VdG~lyANVw~t~~I~rI~p~sGrV~~widlS 215 (262)
T COG3823 184 VDGELYANVWQTTRIARIDPDSGRVVAWIDLS 215 (262)
T ss_pred eccEEEEeeeeecceEEEcCCCCcEEEEEEcc
Confidence 37877766554457888999999986434333
No 157
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=44.94 E-value=6.4e+02 Score=30.49 Aligned_cols=110 Identities=9% Similarity=0.100 Sum_probs=70.2
Q ss_pred cCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCC
Q 006913 138 SSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSP 216 (626)
Q Consensus 138 ~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg 216 (626)
.=+.|.+|+..|.|..+|- +++.+..+.. +. ... ..+..+|++| -|-||+.+|.|..+|.+.+
T Consensus 171 YLNKIvvGs~~G~lql~Nvrt~K~v~~f~~----~~-------s~I-T~ieqsPaLD----VVaiG~~~G~ViifNlK~d 234 (910)
T KOG1539|consen 171 YLNKIVVGSSQGRLQLWNVRTGKVVYTFQE----FF-------SRI-TAIEQSPALD----VVAIGLENGTVIIFNLKFD 234 (910)
T ss_pred heeeEEEeecCCcEEEEEeccCcEEEEecc----cc-------cce-eEeccCCcce----EEEEeccCceEEEEEcccC
Confidence 3467889988889999996 4888776511 11 000 1233567776 4889999999999999999
Q ss_pred eEEEEEcCCCCCcceeeeeecCCe--EEEEEcCCCEEEEEECCCCcEEEEE
Q 006913 217 YFNWIQDLSSFDKAFTLTPGNNGY--LYVTIPVRALVLALDTSSGNILWHK 265 (626)
Q Consensus 217 ~~~w~~~~~s~~~v~sI~~D~dG~--LwVGT~~gG~l~alD~~tG~~~w~~ 265 (626)
++....... ...+.++....||+ |-+|. ..|.+...|....+..|..
T Consensus 235 kil~sFk~d-~g~VtslSFrtDG~p~las~~-~~G~m~~wDLe~kkl~~v~ 283 (910)
T KOG1539|consen 235 KILMSFKQD-WGRVTSLSFRTDGNPLLASGR-SNGDMAFWDLEKKKLINVT 283 (910)
T ss_pred cEEEEEEcc-ccceeEEEeccCCCeeEEecc-CCceEEEEEcCCCeeeeee
Confidence 877653322 12344444445664 33333 3466767777666666654
No 158
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=44.81 E-value=3.2e+02 Score=29.40 Aligned_cols=149 Identities=18% Similarity=0.071 Sum_probs=75.3
Q ss_pred cCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEE-EcCCeEEEEcC-CCCEEEEeeccCCCC
Q 006913 237 NNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVG-SLDGLLYSFSP-SGVLNKFSKSDTSDS 314 (626)
Q Consensus 237 ~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVG-T~~gGLy~~d~-~g~~~~~~~~~~~~~ 314 (626)
..|.+......+|.+..+|..|-.+....... -..+++++-.++|+..+. +.+..+-.+|. .|.......
T Consensus 33 ~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH--~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir------ 104 (405)
T KOG1273|consen 33 RWGDYLAVGCANGRVVIYDFDTFRIARMLSAH--VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR------ 104 (405)
T ss_pred cCcceeeeeccCCcEEEEEccccchhhhhhcc--ccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE------
Confidence 34433333334566666675444322111000 112566777788876664 45667777775 365443333
Q ss_pred ccccCceEEEEEEecCCcEEEEEeeecCeeEEecccCCcceeeecCce--eeeeeccccceeeeeecccccCCCCcccCC
Q 006913 315 VIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSLLSKSDLQHFVLDESL--VLAFLTASNQKLVASCSQTRPKLPSIYTGN 392 (626)
Q Consensus 315 ~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~~~~~~d~~~f~~d~gl--i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 392 (626)
+++|...+.+-+.+-+..+.+.-. ....+..|. +.. ++..-.-.-.-.+.+|+--.++..-+|+||
T Consensus 105 --f~spv~~~q~hp~k~n~~va~~~~--------~sp~vi~~s--~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt 172 (405)
T KOG1273|consen 105 --FDSPVWGAQWHPRKRNKCVATIME--------ESPVVIDFS--DPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT 172 (405)
T ss_pred --ccCccceeeeccccCCeEEEEEec--------CCcEEEEec--CCceeeccCCCccccccccccccccCCCCEEEEec
Confidence 345555555555555554443210 011011111 111 111111112223345555666777889999
Q ss_pred ceeeeeeehhhHH
Q 006913 393 ERAILLFLFFESV 405 (626)
Q Consensus 393 ~~~~~~~~~~~~~ 405 (626)
-+++++++-+|+.
T Consensus 173 sKGkllv~~a~t~ 185 (405)
T KOG1273|consen 173 SKGKLLVYDAETL 185 (405)
T ss_pred CcceEEEEecchh
Confidence 9999999999986
No 159
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=44.64 E-value=4e+02 Score=28.09 Aligned_cols=193 Identities=12% Similarity=0.057 Sum_probs=107.3
Q ss_pred cccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC
Q 006913 79 IGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT 156 (626)
Q Consensus 79 i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~ 156 (626)
.+...++..+|+..+.. ++-+...|..++.. ...+.+ +...+.+..+..++..|.-|+.+.-|..+|.
T Consensus 65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~----t~~f~G------H~~dVlsva~s~dn~qivSGSrDkTiklwnt 134 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWDGTLRLWDLATGES----TRRFVG------HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT 134 (315)
T ss_pred EecceEEccCCceEEeccccceEEEEEecCCcE----EEEEEe------cCCceEEEEecCCCceeecCCCcceeeeeee
Confidence 34556667888888865 67777778887631 122221 1122334344444555666788888888887
Q ss_pred CCcEEEEECCcccccccccccccCCCCCccccceEEEcC--CCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeee
Q 006913 157 HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQC--EGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLT 234 (626)
Q Consensus 157 ~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~--dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~ 234 (626)
-|........ . .. ....+....-+. +-.|.-+.+++-+-..|.++-+.... ..+....+.++.
T Consensus 135 ~g~ck~t~~~--------~-~~-----~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~-~~gh~~~v~t~~ 199 (315)
T KOG0279|consen 135 LGVCKYTIHE--------D-SH-----REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT-FIGHSGYVNTVT 199 (315)
T ss_pred cccEEEEEec--------C-CC-----cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc-cccccccEEEEE
Confidence 6666555311 0 00 011122222221 22233345677777888877444322 112234566778
Q ss_pred eecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEE-cCCeEEEEcCC
Q 006913 235 PGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGS-LDGLLYSFSPS 300 (626)
Q Consensus 235 ~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT-~~gGLy~~d~~ 300 (626)
+..||.+.+....+|.++..|...++-+...... ..+.++++.+ +..|+.- .+..|-.+|..
T Consensus 200 vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~---~~v~sl~fsp-nrywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 200 VSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF---DIVNSLCFSP-NRYWLCAATATSIKIWDLE 262 (315)
T ss_pred ECCCCCEEecCCCCceEEEEEccCCceeEeccCC---CeEeeEEecC-CceeEeeccCCceEEEecc
Confidence 8889998886544566777777777766544333 2356677774 4556542 23467777754
No 160
>PTZ00420 coronin; Provisional
Probab=43.92 E-value=5.8e+02 Score=29.69 Aligned_cols=63 Identities=13% Similarity=-0.028 Sum_probs=44.6
Q ss_pred EEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEE
Q 006913 201 ISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHK 265 (626)
Q Consensus 201 IGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~ 265 (626)
.+..++.|..+|.++++....... ...+.++....+|.+.+++..++.+..+|+.++......
T Consensus 143 SgS~DgtIrIWDl~tg~~~~~i~~--~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 143 SSGFDSFVNIWDIENEKRAFQINM--PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEeCCCeEEEEECCCCcEEEEEec--CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 456688899999998876543321 124566777778988877655678888999998876543
No 161
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=43.34 E-value=79 Score=32.79 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=39.2
Q ss_pred CeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCc--ceeeeee-cCCeEEEEEcCCCEEEEEE
Q 006913 197 GSIYISNTQGELYSLSAHSPYFNWIQDLSSFDK--AFTLTPG-NNGYLYVTIPVRALVLALD 255 (626)
Q Consensus 197 G~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~--v~sI~~D-~dG~LwVGT~~gG~l~alD 255 (626)
.-|.+||.++.||.+|+++-.+......++... ..+-..| .|.+|.|++ ++|.+|.+.
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~-Rdg~iy~ir 256 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVAC-RDGKIYTIR 256 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEe-CCCEEEEEe
Confidence 458999999999999998865554444443211 1112345 788999998 567888764
No 162
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=43.14 E-value=8 Score=34.73 Aligned_cols=36 Identities=17% Similarity=0.451 Sum_probs=0.0
Q ss_pred HHHHHHHhheeeEEEeeccc----cccc----cchHHHHHHhhh
Q 006913 405 VVLLVLAVLVRFCCIFWRKK----KLQG----QHLGNFLEKRRS 440 (626)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~ 440 (626)
+++|||++|..|-|.|-||| .|.+ -|+++.|-.||+
T Consensus 31 iL~VILgiLLliGCWYckRRSGYk~L~~k~~~~gt~~~~t~rc~ 74 (118)
T PF14991_consen 31 ILIVILGILLLIGCWYCKRRSGYKTLRDKSLHAGTQSTLTGRCY 74 (118)
T ss_dssp --------------------------------------------
T ss_pred eHHHHHHHHHHHhheeeeecchhhhhhhccccccCchhhcCccc
Confidence 36788899999999888775 2332 355555555543
No 163
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=42.04 E-value=4.7e+02 Score=28.12 Aligned_cols=64 Identities=11% Similarity=0.071 Sum_probs=32.3
Q ss_pred CCeEEEEcCC---CeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCC--CEEEEEECCCCcE
Q 006913 196 EGSIYISNTQ---GELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVR--ALVLALDTSSGNI 261 (626)
Q Consensus 196 dG~LwIGT~~---GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~g--G~l~alD~~tG~~ 261 (626)
+..|.+.... ..||.+|.++++........ .....+....+|. |+++...+ ..++.+|..++..
T Consensus 289 g~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 289 GKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 3445544332 25999998887654322111 1122233444554 44444221 2677888766644
No 164
>PTZ00421 coronin; Provisional
Probab=40.44 E-value=6e+02 Score=28.89 Aligned_cols=144 Identities=10% Similarity=0.025 Sum_probs=70.0
Q ss_pred CeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCeE
Q 006913 140 SSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPYF 218 (626)
Q Consensus 140 G~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~ 218 (626)
+.|..++.++-|..+|.. ++..-.+.. + ...+ .++.....+..|..++.++.|..+|+++++.
T Consensus 139 ~iLaSgs~DgtVrIWDl~tg~~~~~l~~------------h---~~~V-~sla~spdG~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVERGKAVEVIKC------------H---SDQI-TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred CEEEEEeCCCEEEEEECCCCeEEEEEcC------------C---CCce-EEEEEECCCCEEEEecCCCEEEEEECCCCcE
Confidence 356666777778888865 654333200 0 0111 2333443134466777788999999998876
Q ss_pred EEEEcCC-CCCcceeeeeecCCeEEEEEc---CCCEEEEEECCCCcE-EEEEecCCCCCceeeEEEeeCC-eEEEEEc-C
Q 006913 219 NWIQDLS-SFDKAFTLTPGNNGYLYVTIP---VRALVLALDTSSGNI-LWHKSVGPLGSAEYAPVVDSNG-WISVGSL-D 291 (626)
Q Consensus 219 ~w~~~~~-s~~~v~sI~~D~dG~LwVGT~---~gG~l~alD~~tG~~-~w~~~~~~l~~~~sspvvD~dG-~IWVGT~-~ 291 (626)
....... .......+.....+.|..+.. ..+.+...|..+... ........ ......+..+.++ .+++|+. +
T Consensus 203 v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC-CCceEEEEEcCCCCEEEEEEeCC
Confidence 5432211 111111222222333332221 124566667554332 11111111 1123345566565 4666653 6
Q ss_pred CeEEEEcCC
Q 006913 292 GLLYSFSPS 300 (626)
Q Consensus 292 gGLy~~d~~ 300 (626)
+.|..|+..
T Consensus 282 g~Iriwdl~ 290 (493)
T PTZ00421 282 GNIRCFELM 290 (493)
T ss_pred CeEEEEEee
Confidence 677777753
No 165
>PHA03098 kelch-like protein; Provisional
Probab=40.09 E-value=6e+02 Score=28.74 Aligned_cols=184 Identities=14% Similarity=0.184 Sum_probs=86.2
Q ss_pred eCCEEEEEe--C------CcEEEEcC-CCCEEEEEeCCCCCCc-ccCeEEecCCeEEEEE--C-----CeEEEEECCCCc
Q 006913 46 EDGKIYACS--E------KTLFAFES-NGTIAWSLDLDFTCNI-GTAPVHGGTGEVYIVA--E-----NRVLKVDLLKIG 108 (626)
Q Consensus 46 ~dG~IwIgS--d------ggL~a~d~-~G~~~W~~~~~~~~~i-~~sp~iD~dG~IwVgT--~-----ggL~~id~~~~~ 108 (626)
.++.||+.. + ..+++||. ++ .|.....-.... ..+.+. -+|.||+.. + +.+.++|+.++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~- 368 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTK--SWNKVPELIYPRKNPGVTV-FNNRIYVIGGIYNSISLNTVESWKPGES- 368 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCC--eeeECCCCCcccccceEEE-ECCEEEEEeCCCCCEecceEEEEcCCCC-
Confidence 577888732 1 25788887 44 464322111011 122222 367888753 2 24777888765
Q ss_pred cccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEc---C----CeEEEEeCCCcEEEEECCcccccccccccccCC
Q 006913 109 TSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVK---G----RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTD 181 (626)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~---~----gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l 181 (626)
.|....... . ..........++.||+... + +.+.+||+... .|.... ..+ ...
T Consensus 369 ------~W~~~~~lp-~---~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~---~~p------~~r 428 (534)
T PHA03098 369 ------KWREEPPLI-F---PRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN-KWSKGS---PLP------ISH 428 (534)
T ss_pred ------ceeeCCCcC-c---CCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC-eeeecC---CCC------ccc
Confidence 344322111 0 1111222345788888421 1 34778887533 476311 111 000
Q ss_pred CCCccccceEEEcCCCeEEEEcC-C--------CeEEEEeCCCCeEEEEEcCCC-C-CcceeeeeecCCeEEEEEcC---
Q 006913 182 VDCYFTSVPVIDQCEGSIYISNT-Q--------GELYSLSAHSPYFNWIQDLSS-F-DKAFTLTPGNNGYLYVTIPV--- 247 (626)
Q Consensus 182 ~~~~i~sspviD~~dG~LwIGT~-~--------GgL~~ld~~tg~~~w~~~~~s-~-~~v~sI~~D~dG~LwVGT~~--- 247 (626)
. ..+.+.. ++.||+-.. + ..+++||+.++ .|..-... . ....+++. .+|.|||....
T Consensus 429 ~----~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~ 499 (534)
T PHA03098 429 Y----GGCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTN--KWTELSSLNFPRINASLCI-FNNKIYVVGGDKYE 499 (534)
T ss_pred c----CceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCC--ceeeCCCCCcccccceEEE-ECCEEEEEcCCcCC
Confidence 0 0112333 678886432 1 12888998875 47642211 1 11112222 36788875411
Q ss_pred --CCEEEEEECCCCcEEEE
Q 006913 248 --RALVLALDTSSGNILWH 264 (626)
Q Consensus 248 --gG~l~alD~~tG~~~w~ 264 (626)
...+.++|+.++ .|.
T Consensus 500 ~~~~~v~~yd~~~~--~W~ 516 (534)
T PHA03098 500 YYINEIEVYDDKTN--TWT 516 (534)
T ss_pred cccceeEEEeCCCC--EEE
Confidence 124666776554 454
No 166
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=39.92 E-value=1.3e+02 Score=36.08 Aligned_cols=106 Identities=14% Similarity=0.297 Sum_probs=62.9
Q ss_pred EEEEcCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEe
Q 006913 134 AVSTSSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLS 212 (626)
Q Consensus 134 ~~~d~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld 212 (626)
++...+|-+|.++..+-.+.+|+. |...|.+.. ..++ ...||+|-.+..+..+|
T Consensus 102 pcrssdGi~ysg~k~d~~~lvD~~tg~~~~tf~~---------------------~~~~----~~~v~~grt~ytv~m~d 156 (903)
T KOG1027|consen 102 PCRSSDGILYSGSKQDIWYLVDPKTGEIDYTFNT---------------------AEPI----KQLVYLGRTNYTVTMYD 156 (903)
T ss_pred cccCCCCeEEecccccceEEecCCccceeEEEec---------------------CCcc----hhheecccceeEEeccc
Confidence 445678999999988888999985 888887511 0011 23466666666677777
Q ss_pred CCCCeEEEEEcCCCCCcceeeeeecCC--eEEEEEcCCCEEEEEECCCCcEEEEEe
Q 006913 213 AHSPYFNWIQDLSSFDKAFTLTPGNNG--YLYVTIPVRALVLALDTSSGNILWHKS 266 (626)
Q Consensus 213 ~~tg~~~w~~~~~s~~~v~sI~~D~dG--~LwVGT~~gG~l~alD~~tG~~~w~~~ 266 (626)
.+.....|+.+.... +.....+..+ .-.++....|.+..+|.++|..+|...
T Consensus 157 ~~~~~~~wn~t~~dy--~a~~~~~~~~~~~~~~~~~~~g~i~t~D~~~g~~~~~q~ 210 (903)
T KOG1027|consen 157 KNVRGKTWNTTFGDY--SAQYPSGVRGEKMSHFHSLGNGYIVTVDSESGEKLWLQD 210 (903)
T ss_pred CcccCceeeccccch--hccCCCccCCceeEEEeecCCccEEeccCcccceeeccc
Confidence 777777787543211 0000011111 222333334566667888888888643
No 167
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=38.73 E-value=8.1e+02 Score=29.91 Aligned_cols=198 Identities=12% Similarity=0.033 Sum_probs=91.9
Q ss_pred CCceeeeeEEeeCCEEEEEeC-CcEEEEcC-CCC---EEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCC
Q 006913 35 SAFRLSKPLIGEDGKIYACSE-KTLFAFES-NGT---IAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKI 107 (626)
Q Consensus 35 ~~~~~Sspvid~dG~IwIgSd-ggL~a~d~-~G~---~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~ 107 (626)
.+...++... ..+.+..|++ +.+.+|.. ++. ++-.+.++ +....++.+|+..++. +-+|.+++..+.
T Consensus 55 ~g~~v~~ia~-~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp-----~r~~~v~g~g~~iaagsdD~~vK~~~~~D~ 128 (933)
T KOG1274|consen 55 SGELVSSIAC-YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLP-----IRDLAVSGSGKMIAAGSDDTAVKLLNLDDS 128 (933)
T ss_pred cCceeEEEee-cccceEEeeccceEEEeeCCCCCccceeeeeecc-----ceEEEEecCCcEEEeecCceeEEEEecccc
Confidence 3444444444 2334555663 44555543 332 22222221 3345667777766654 567888876654
Q ss_pred ccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEE-EEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCc
Q 006913 108 GTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYI-NVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCY 185 (626)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwI-gT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~ 185 (626)
.. ..... ...+ .|..+-.+.++++.. .+.+|.|.+++.+ |.+..........+ ... ..-
T Consensus 129 s~----~~~lr------gh~a-pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n-------~~~-~s~ 189 (933)
T KOG1274|consen 129 SQ----EKVLR------GHDA-PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN-------EFI-LSR 189 (933)
T ss_pred ch----heeec------ccCC-ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccc-------ccc-ccc
Confidence 21 11111 1122 333344455555544 4566778889975 66544321111110 000 011
Q ss_pred cccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCc-ceeeeeecCCeEEEEEcCCCEEEEEECC
Q 006913 186 FTSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDK-AFTLTPGNNGYLYVTIPVRALVLALDTS 257 (626)
Q Consensus 186 i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~-v~sI~~D~dG~LwVGT~~gG~l~alD~~ 257 (626)
+...+.-.+.+|.+-+...++-|..|++++.............. +..+.-+.+|....+..-++.+...|..
T Consensus 190 i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 190 ICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred eeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 11222333325777666667788999888854443322111111 2233445566433333233455555544
No 168
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=37.70 E-value=7.8e+02 Score=29.39 Aligned_cols=111 Identities=12% Similarity=0.045 Sum_probs=63.1
Q ss_pred cccceEEEcCCCeEE-EEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEE
Q 006913 186 FTSVPVIDQCEGSIY-ISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILW 263 (626)
Q Consensus 186 i~sspviD~~dG~Lw-IGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w 263 (626)
+.+++...+.+++-+ -|+-++.+...+.-..++....+.. +.|.+++.-.|| ...||+. .|....|+....++.-
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~avIGt~-~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKGAVIGTF-NGYCRFYDTEGLKLVS 487 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh--hhheeEEeccCCceEEEEEe-ccEEEEEEccCCeEEE
Confidence 334454433234444 4666887887777776665333432 245566665566 5778886 4677778866655543
Q ss_pred EEecC--C----CCCceeeEEEe--eCCeEEEEEcCCeEEEEcC
Q 006913 264 HKSVG--P----LGSAEYAPVVD--SNGWISVGSLDGLLYSFSP 299 (626)
Q Consensus 264 ~~~~~--~----l~~~~sspvvD--~dG~IWVGT~~gGLy~~d~ 299 (626)
...+. . .+.-++.+-.. ....|.|.+.|..|-.||.
T Consensus 488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred eeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 32221 1 01112222221 1237999999999999986
No 169
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=37.36 E-value=1.3e+02 Score=31.16 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=38.9
Q ss_pred eEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCc-eeeEEEe-eCCeEEEEEcCCeEEEE
Q 006913 240 YLYVTIPVRALVLALDTSSGNILWHKSVGPLGSA-EYAPVVD-SNGWISVGSLDGLLYSF 297 (626)
Q Consensus 240 ~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~-~sspvvD-~dG~IWVGT~~gGLy~~ 297 (626)
.|.+||. .+.++.+|+..=.+..+...+..... ..+-..| -|.+|.|.|.+|.||.+
T Consensus 197 cLViGTE-~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 197 CLVIGTE-SGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred eEEEEec-CCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 6899995 57999999766556555555421111 1222345 67899999999999987
No 170
>PTZ00421 coronin; Provisional
Probab=37.00 E-value=6.8e+02 Score=28.48 Aligned_cols=68 Identities=12% Similarity=0.019 Sum_probs=44.9
Q ss_pred CeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEE
Q 006913 197 GSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHK 265 (626)
Q Consensus 197 G~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~ 265 (626)
+.|..|+.++.|..+|.++++....... ....+.++....+|.+.+....++.+..+|..+++.....
T Consensus 139 ~iLaSgs~DgtVrIWDl~tg~~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVERGKAVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV 206 (493)
T ss_pred CEEEEEeCCCEEEEEECCCCeEEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence 4567777788899999988765432221 1234556666667866555445678888999888876543
No 171
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=35.98 E-value=4.1e+02 Score=28.56 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=41.2
Q ss_pred EEEEE-CCeEEEEECCCCccccceeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEEcCCeEEEEeC-CCcEE
Q 006913 91 VYIVA-ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINVKGRALFAFMT-HGQLL 161 (626)
Q Consensus 91 IwVgT-~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~ 161 (626)
+.|+. .+.|+.++..++. .-.+. ..+...+..|......++.-+|....++-|||++. .|++-
T Consensus 408 ~iVCNrsntv~imn~qGQv------Vrsfs--SGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 408 FIVCNRSNTVYIMNMQGQV------VRSFS--SGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE 472 (508)
T ss_pred EEEEcCCCeEEEEeccceE------Eeeec--cCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee
Confidence 44444 5778888877641 11222 22333456777777778888998888899999995 57653
No 172
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=34.83 E-value=8.1e+02 Score=28.84 Aligned_cols=109 Identities=12% Similarity=0.115 Sum_probs=59.5
Q ss_pred cceEE-EcCCCeEEEE-cCCCeEEEEeCCCCeE--EEEE------cCC--CCCcceeeeeecCCeEEEEEcCCCEEEEEE
Q 006913 188 SVPVI-DQCEGSIYIS-NTQGELYSLSAHSPYF--NWIQ------DLS--SFDKAFTLTPGNNGYLYVTIPVRALVLALD 255 (626)
Q Consensus 188 sspvi-D~~dG~LwIG-T~~GgL~~ld~~tg~~--~w~~------~~~--s~~~v~sI~~D~dG~LwVGT~~gG~l~alD 255 (626)
.++++ .+ ++.+.+. ..++.|+.+|.+++.- .... ..+ ..+.+++++.-..|.+.|+..-.+.+..+|
T Consensus 121 kcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD 199 (735)
T KOG0308|consen 121 KCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD 199 (735)
T ss_pred eeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEec
Confidence 44444 54 5556553 3477788888887622 1111 111 123467777766778888754345666788
Q ss_pred CCCCcEEEEEecCCCCCceeeEEEeeCCe-EEEEEcCCeEEEEcC
Q 006913 256 TSSGNILWHKSVGPLGSAEYAPVVDSNGW-ISVGSLDGLLYSFSP 299 (626)
Q Consensus 256 ~~tG~~~w~~~~~~l~~~~sspvvD~dG~-IWVGT~~gGLy~~d~ 299 (626)
+.+++..-... +--.+ +..++++++|+ +.-|+.+|.|-.+|.
T Consensus 200 prt~~kimkLr-GHTdN-Vr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 200 PRTCKKIMKLR-GHTDN-VRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred cccccceeeee-ccccc-eEEEEEcCCCCeEeecCCCceEEeeec
Confidence 88887653322 11012 34456665774 444555555555553
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=34.18 E-value=6.9e+02 Score=27.71 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=38.2
Q ss_pred CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEE
Q 006913 205 QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHK 265 (626)
Q Consensus 205 ~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~ 265 (626)
++-+...|..+|......+ -.+.+.++....||.+.+.+..+..+-.+|+.+|++.+..
T Consensus 153 Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred CceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec
Confidence 3445555555554333211 1234556666679999999876667888899999998764
No 174
>PRK04922 tolB translocation protein TolB; Provisional
Probab=33.97 E-value=6.7e+02 Score=27.55 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=54.9
Q ss_pred eEEEcCCCeEEEE-cCCC--eEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCC--EEEEEECCCCcEEE
Q 006913 190 PVIDQCEGSIYIS-NTQG--ELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRA--LVLALDTSSGNILW 263 (626)
Q Consensus 190 pviD~~dG~LwIG-T~~G--gL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG--~l~alD~~tG~~~w 263 (626)
+...+.+..|.+. +.+| .||.+|.++++..-........ ..+....|| .|++.+...+ .+|.+|..++....
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~--~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGID--TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER 330 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCc--cceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 4444313346543 3333 5999999888754322211111 122334456 4555553333 48888877776543
Q ss_pred EEecCCCCCceeeEEEeeCC-eEEEEEcCC---eEEEEcCC-CCEE
Q 006913 264 HKSVGPLGSAEYAPVVDSNG-WISVGSLDG---LLYSFSPS-GVLN 304 (626)
Q Consensus 264 ~~~~~~l~~~~sspvvD~dG-~IWVGT~~g---GLy~~d~~-g~~~ 304 (626)
....+ .....+...++| .|++.+.++ .|+.++.. ++..
T Consensus 331 lt~~g---~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 331 LTFQG---NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred eecCC---CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 22111 122245555565 455554433 48888864 4443
No 175
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=33.67 E-value=46 Score=31.70 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=8.3
Q ss_pred HHHHhheeeEEEeeccc
Q 006913 408 LVLAVLVRFCCIFWRKK 424 (626)
Q Consensus 408 ~~~~~~~~~~~~~~~~~ 424 (626)
+|.++++.|||.-++||
T Consensus 63 ll~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 63 LLGILALVFIFCIRRKK 79 (154)
T ss_pred HHHHHHhheeEEEeccc
Confidence 33444444555555554
No 176
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=33.26 E-value=7.4e+02 Score=27.79 Aligned_cols=173 Identities=16% Similarity=0.018 Sum_probs=0.0
Q ss_pred ceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEE-EEcCCeEEEEcCC-CCEEEEe
Q 006913 230 AFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISV-GSLDGLLYSFSPS-GVLNKFS 307 (626)
Q Consensus 230 v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWV-GT~~gGLy~~d~~-g~~~~~~ 307 (626)
+..+..-..|..++...+.+.....|..+|..+-......-.-.+.+..+.+||.|+. |+.++-|-.+|.. ....-.+
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F 385 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF 385 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC
Q ss_pred eccCCCCccccCceEEEEEEecCCcEEEEEeeecC--eeEEecccCCcceeeecCc--eeeeeeccccceeeeeeccccc
Q 006913 308 KSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVG--QFSSLLSKSDLQHFVLDES--LVLAFLTASNQKLVASCSQTRP 383 (626)
Q Consensus 308 ~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~G--gl~~~~~~~d~~~f~~d~g--li~~~~~a~~~~~~~~~~~~~~ 383 (626)
. ..+..|.+|....+| .|+.|....| .+..+.+...|+.|..++. ...-.+.-++..++.. .
T Consensus 386 p--------ght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-----g 451 (506)
T KOG0289|consen 386 P--------GHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-----G 451 (506)
T ss_pred C--------CCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-----c
Q ss_pred CCCCcccCCceeeeeeehhhHHHHHHHHhheee
Q 006913 384 KLPSIYTGNERAILLFLFFESVVLLVLAVLVRF 416 (626)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (626)
.=..+|.-......|=..-|+....-++-.|||
T Consensus 452 ~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 452 SDLQVYICKKKTKSWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred ceeEEEEEecccccceeeehhhhcccccceeee
No 177
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=33.22 E-value=6.7e+02 Score=27.67 Aligned_cols=102 Identities=23% Similarity=0.269 Sum_probs=45.7
Q ss_pred cCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCc--eeeEEEeeCCe---EEEEEcC----C--eEEEEcCC-CCEE
Q 006913 237 NNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSA--EYAPVVDSNGW---ISVGSLD----G--LLYSFSPS-GVLN 304 (626)
Q Consensus 237 ~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~--~sspvvD~dG~---IWVGT~~----g--GLy~~d~~-g~~~ 304 (626)
....+++||.-.++++.||. .|+.+.....+.++++ ...... +|. |-+.+.. . .+|.+++. +.+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLPVGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEET-TS-EEEEE-SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcC-CCcEEEeecCCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 34568888877778888884 5666655544432222 111111 232 4455532 1 37778874 4433
Q ss_pred EEeeccCCCCcc---ccCceEEEEEEe-cCCcEEEEEeeecCee
Q 006913 305 KFSKSDTSDSVI---QSSPYWFHLLGP-SIGLKAILCLMVVGQF 344 (626)
Q Consensus 305 ~~~~~~~~~~~i---lssp~V~~Il~D-sdG~IwI~T~t~~Ggl 344 (626)
.... ...++ +..++=.|++.+ .+|.+|+......|.+
T Consensus 143 ~v~~---~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~ 183 (381)
T PF02333_consen 143 DVTD---PAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRV 183 (381)
T ss_dssp E-CB---TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEE
T ss_pred EcCC---CCcccccccccceeeEEeecCCCCcEEEEEecCCceE
Confidence 2221 11101 112233456655 4678887665544433
No 178
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=33.22 E-value=15 Score=31.60 Aligned_cols=18 Identities=28% Similarity=0.621 Sum_probs=11.4
Q ss_pred hheeeEEEeecccccccc
Q 006913 412 VLVRFCCIFWRKKKLQGQ 429 (626)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~ 429 (626)
+++.+-..||+=+|++++
T Consensus 14 ~~~i~~y~~~k~~ka~~~ 31 (87)
T PF10883_consen 14 VALILAYLWWKVKKAKKQ 31 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444567788888776
No 179
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=32.86 E-value=16 Score=18.83 Aligned_cols=6 Identities=50% Similarity=2.090 Sum_probs=4.7
Q ss_pred heeeEE
Q 006913 413 LVRFCC 418 (626)
Q Consensus 413 ~~~~~~ 418 (626)
++|+||
T Consensus 5 virycc 10 (11)
T PF08097_consen 5 VIRYCC 10 (11)
T ss_pred hhheec
Confidence 478998
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=32.81 E-value=5.9e+02 Score=26.52 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=49.5
Q ss_pred eeEEEEEE-cCCeEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCe
Q 006913 130 IAGIAVST-SSSSVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGE 207 (626)
Q Consensus 130 ~I~s~~~d-~dG~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~Gg 207 (626)
.|+.+..| ..+.|+++..++-+|+.|.+ |++.-.+. + ..+|+++-.... .++.|.-|..+|.
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r------G---------HtDYvH~vv~R~-~~~qilsG~EDGt 179 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR------G---------HTDYVHSVVGRN-ANGQILSGAEDGT 179 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc------C---------Ccceeeeeeecc-cCcceeecCCCcc
Confidence 45555555 66777777767778999974 88754431 1 023443222223 3788999999999
Q ss_pred EEEEeCCCCeEEE
Q 006913 208 LYSLSAHSPYFNW 220 (626)
Q Consensus 208 L~~ld~~tg~~~w 220 (626)
+...|.++++-.-
T Consensus 180 vRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 180 VRVWDTKTQKHVS 192 (325)
T ss_pred EEEEeccccceeE
Confidence 9999999876543
No 181
>PHA02790 Kelch-like protein; Provisional
Probab=32.55 E-value=7.6e+02 Score=27.75 Aligned_cols=165 Identities=12% Similarity=0.105 Sum_probs=80.7
Q ss_pred eCCEEEEEe--C-----CcEEEEcC-CCCEEEEEeCCCCCCc-ccCeEEecCCeEEEEE--C--CeEEEEECCCCccccc
Q 006913 46 EDGKIYACS--E-----KTLFAFES-NGTIAWSLDLDFTCNI-GTAPVHGGTGEVYIVA--E--NRVLKVDLLKIGTSES 112 (626)
Q Consensus 46 ~dG~IwIgS--d-----ggL~a~d~-~G~~~W~~~~~~~~~i-~~sp~iD~dG~IwVgT--~--ggL~~id~~~~~~~~~ 112 (626)
-++.||+.. + ..+.+||+ ++ .|....+-.... ..+.+ .-+|.||+.. + ..+.++++.++
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~--~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n----- 341 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISN--NWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDA----- 341 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCC--EEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCC-----
Confidence 467787733 1 24778887 43 364422111111 12222 2468888853 1 34777887654
Q ss_pred eeEEEecCCCCCCCCCCeeEEEEEEcCCeEEEEE-cC---CeEEEEeCCCcEEEEECCcccccccccccccCCCCCcccc
Q 006913 113 ATQVFYGTGSGKGGTGAIAGIAVSTSSSSVYINV-KG---RALFAFMTHGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTS 188 (626)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~I~s~~~d~dG~LwIgT-~~---gGL~a~d~~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~s 188 (626)
.|.....-. ...........+|.||+-. .+ ..+.+||+... .|...+ ..+. +. . ..
T Consensus 342 --~W~~~~~l~----~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~~---~m~~----~r----~--~~ 401 (480)
T PHA02790 342 --AWVNMPSLL----KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD-QWQFGP---STYY----PH----Y--KS 401 (480)
T ss_pred --eEEECCCCC----CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC-EEEeCC---CCCC----cc----c--cc
Confidence 454322111 1111223345688999742 11 23567888633 587522 1110 00 0 01
Q ss_pred ceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC-C-CcceeeeeecCCeEEEEE
Q 006913 189 VPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS-F-DKAFTLTPGNNGYLYVTI 245 (626)
Q Consensus 189 spviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s-~-~~v~sI~~D~dG~LwVGT 245 (626)
..+.- +|.||+.. |...+||++++ .|..-.+. . .....++. -+|.|||..
T Consensus 402 ~~~~~--~~~IYv~G--G~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v-~~~~IYviG 453 (480)
T PHA02790 402 CALVF--GRRLFLVG--RNAEFYCESSN--TWTLIDDPIYPRDNPELII-VDNKLLLIG 453 (480)
T ss_pred eEEEE--CCEEEEEC--CceEEecCCCC--cEeEcCCCCCCccccEEEE-ECCEEEEEC
Confidence 12222 78999863 34678888775 48643221 1 11112222 378899864
No 182
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=32.40 E-value=8.9e+02 Score=28.52 Aligned_cols=102 Identities=16% Similarity=0.078 Sum_probs=52.0
Q ss_pred CCeEEEEc-CCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCce
Q 006913 196 EGSIYISN-TQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAE 274 (626)
Q Consensus 196 dG~LwIGT-~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~ 274 (626)
.|.+.++. .++-|..+|+++++....-. +-.+.+..+.++.||+=.+.+..+|.+-..|..-.+.+.++.... ..++
T Consensus 182 t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~-e~VW 259 (735)
T KOG0308|consen 182 TGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK-EGVW 259 (735)
T ss_pred cceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc-CceE
Confidence 55566643 36668888999876544322 223457777888888444433334455444433333332222221 0112
Q ss_pred eeEEEeeCCeEEEEEcCCeEEEEcC
Q 006913 275 YAPVVDSNGWISVGSLDGLLYSFSP 299 (626)
Q Consensus 275 sspvvD~dG~IWVGT~~gGLy~~d~ 299 (626)
.-.+..+=..+|.|..++.||+-|.
T Consensus 260 aL~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 260 ALQSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred EEeeCCCcceEEecCCCCcEEeccc
Confidence 1111112246777777777777663
No 183
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=31.49 E-value=8.1e+02 Score=27.73 Aligned_cols=102 Identities=5% Similarity=0.057 Sum_probs=52.9
Q ss_pred CCEEEEEe--CCcEEEEcC--CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecC
Q 006913 47 DGKIYACS--EKTLFAFES--NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGT 120 (626)
Q Consensus 47 dG~IwIgS--dggL~a~d~--~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~ 120 (626)
.+.|++.. ++.++.+|. +++.+..+. +. ...+.++....+|.=++.+ +.-|-..|.++|+ ....+..
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-gH-~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~-----~~~~f~~ 298 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-GH-RKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ-----VLSRFHL 298 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhh-cc-hhhhhhhhccccCCeeeeeecceeeeeeccccce-----EEEEEec
Confidence 45565543 455666665 344332221 11 1123334444567766655 6777777888874 2222221
Q ss_pred CCCCCCCCCeeEEEE--EEcCCeEEEEEcCCeEEEEeCC-CcEEE
Q 006913 121 GSGKGGTGAIAGIAV--STSSSSVYINVKGRALFAFMTH-GQLLW 162 (626)
Q Consensus 121 ~~~~~~~~~~I~s~~--~d~dG~LwIgT~~gGL~a~d~~-G~~~w 162 (626)
+.+....- .+..+.+.+|..++.|..+|.. |+++-
T Consensus 299 -------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 299 -------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred -------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH
Confidence 11222211 1223556677778889999975 87653
No 184
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=31.10 E-value=6.6e+02 Score=26.61 Aligned_cols=58 Identities=10% Similarity=0.126 Sum_probs=37.8
Q ss_pred eeeeecCCeEEEEEcCC------CEEEEEECCCCcEEEEEecCC-------------CCCceeeEEEeeCCe-EEEEEc
Q 006913 232 TLTPGNNGYLYVTIPVR------ALVLALDTSSGNILWHKSVGP-------------LGSAEYAPVVDSNGW-ISVGSL 290 (626)
Q Consensus 232 sI~~D~dG~LwVGT~~g------G~l~alD~~tG~~~w~~~~~~-------------l~~~~sspvvD~dG~-IWVGT~ 290 (626)
.|+...+|.+||+...+ -.|+.++.. |+..-...++. .+.-+-++++.++|. ||+.++
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 45556799999999766 688889854 77643332221 011234577777877 999874
No 185
>COG5399 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.06 E-value=28 Score=31.63 Aligned_cols=49 Identities=31% Similarity=0.404 Sum_probs=37.3
Q ss_pred hhhhhhhhhhHHHHHHHhhhhhhh-------------------------Hhhhhe-eeeecccccccccCCCCCCcccc
Q 006913 443 LKKKAFDRSITELEKKVAEDAVAN-------------------------EVIKKS-VVCLGRDEAAASSESKSFPPVYD 495 (626)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 495 (626)
.|++.+.+.|.|.=++.|-+|+.. ||++++ +|+-||+..+ -.-.||+|.
T Consensus 13 t~~~v~~~~v~~~~~~vA~eaLeeWdp~aSDFiVlRD~~eV~~p~pl~~evle~v~~~~~~~~e~e----~~i~~PVY~ 87 (139)
T COG5399 13 TKKEVINKDVVEAVKEVAIEALEEWDPTASDFIVLRDFYEVSYPAPLSREVLEKVRKYSPKRVENE----VEIALPVYE 87 (139)
T ss_pred eHHHhhhhhHHHHHHHHHHHHHHhcCCCcCceEEEecceeEEeeCCCCHHHHHHHHHhCccccCCe----eEEEeeEEE
Confidence 467777888888878877666543 888888 9999999654 456799984
No 186
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=30.42 E-value=3.3e+02 Score=29.18 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=56.6
Q ss_pred cceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC---CCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEE
Q 006913 188 SVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS---FDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWH 264 (626)
Q Consensus 188 sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s---~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~ 264 (626)
.++...+.+.-|.+||.-.-+..||.++-+- .....+. ...+..+-....|+|||....+|.+-..|-.+++.+..
T Consensus 220 rsiSfHPsGefllvgTdHp~~rlYdv~T~Qc-fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t 298 (430)
T KOG0640|consen 220 RSISFHPSGEFLLVGTDHPTLRLYDVNTYQC-FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRT 298 (430)
T ss_pred eeEeecCCCceEEEecCCCceeEEeccceeE-eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHH
Confidence 3444444355688998877788888887332 2221111 23355666677899999765556666666444444322
Q ss_pred EecCCCCCceeeEEEeeCCeEEEEE
Q 006913 265 KSVGPLGSAEYAPVVDSNGWISVGS 289 (626)
Q Consensus 265 ~~~~~l~~~~sspvvD~dG~IWVGT 289 (626)
+.....+..+++.+..+||...+.+
T Consensus 299 ~~~AH~gsevcSa~Ftkn~kyiLsS 323 (430)
T KOG0640|consen 299 IGNAHGGSEVCSAVFTKNGKYILSS 323 (430)
T ss_pred HHhhcCCceeeeEEEccCCeEEeec
Confidence 2111112346667777666554443
No 187
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=30.18 E-value=6.5e+02 Score=26.25 Aligned_cols=69 Identities=14% Similarity=0.063 Sum_probs=38.1
Q ss_pred cceeeeeecCCeEEEEEcCCCEEEEEECCCCc-EEEEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEE--cCCCC
Q 006913 229 KAFTLTPGNNGYLYVTIPVRALVLALDTSSGN-ILWHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSF--SPSGV 302 (626)
Q Consensus 229 ~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~-~~w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~--d~~g~ 302 (626)
.+.++..- +|+|.++. |..++.++....+ +...-.... .....++... ++.|++|+.-.+++.+ +..+.
T Consensus 90 ~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~-~~~i~sl~~~-~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 90 PVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDS-PFYITSLSVF-KNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp -EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-B-SSSEEEEEEE-TTEEEEEESSSSEEEEEEETTTE
T ss_pred cceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecc-eEEEEEEecc-ccEEEEEEcccCEEEEEEEccCC
Confidence 45666554 77888876 3455555544454 432211110 1134445444 6799999987777755 65443
No 188
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=29.58 E-value=8.7e+02 Score=27.49 Aligned_cols=193 Identities=17% Similarity=0.122 Sum_probs=95.2
Q ss_pred CCe-EEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCce
Q 006913 196 EGS-IYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAE 274 (626)
Q Consensus 196 dG~-LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~ 274 (626)
+|+ |-.|.++|.+..++.++....-... . -..++++--..+|+..+.....+.....|..+|....++...
T Consensus 246 ~G~~LatG~~~G~~riw~~~G~l~~tl~~-H-kgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~------ 317 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDGNLISTLGQ-H-KGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH------ 317 (524)
T ss_pred CCCeEEEeecCcEEEEEecCchhhhhhhc-c-CCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec------
Confidence 455 4556677766677766643321100 0 112445544455544443334466777888888766554332
Q ss_pred eeEEE--e--eCCeEEEEEcCCeEEEE--cCCCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEeeecCeeEEec
Q 006913 275 YAPVV--D--SNGWISVGSLDGLLYSF--SPSGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLMVVGQFSSLL 348 (626)
Q Consensus 275 sspvv--D--~dG~IWVGT~~gGLy~~--d~~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t~~Ggl~~~~ 348 (626)
+.|.. + .+..+-....++.|+.+ +.++-...+. -..+.|.+|--+..|.+. .+.++.|-+
T Consensus 318 s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~---------GH~g~V~alk~n~tg~LL-aS~SdD~Tl---- 383 (524)
T KOG0273|consen 318 SAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFI---------GHHGEVNALKWNPTGSLL-ASCSDDGTL---- 383 (524)
T ss_pred cCCccceEEecCceEeecCCCceEEEEEecCCCcceeee---------cccCceEEEEECCCCceE-EEecCCCee----
Confidence 11211 1 12222222234444444 3222222221 123334455555555554 332222222
Q ss_pred ccCCcceee-ecCceeeeeeccccceeeeeecccccCCCCcccCCceeeeeeehhhHHHHHHHHhheeeEEEe
Q 006913 349 SKSDLQHFV-LDESLVLAFLTASNQKLVASCSQTRPKLPSIYTGNERAILLFLFFESVVLLVLAVLVRFCCIF 420 (626)
Q Consensus 349 ~~~d~~~f~-~d~gli~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (626)
+.+. .+.+-+-.+-+.+.+++.-.+|.+.|.-.+ .|++..+..-.|.+.|.+. =++|=.||+
T Consensus 384 -----kiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n---~~~~~~l~sas~dstV~lw--dv~~gv~i~ 446 (524)
T KOG0273|consen 384 -----KIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSN---PNMNLMLASASFDSTVKLW--DVESGVPIH 446 (524)
T ss_pred -----EeeecCCCcchhhhhhhccceeeEeecCCCCccCC---CcCCceEEEeecCCeEEEE--EccCCceeE
Confidence 2222 122234445555666777788888888777 7888899999999887652 234444444
No 189
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=29.01 E-value=58 Score=28.54 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=13.4
Q ss_pred hhhhhhHHHHHHHhh
Q 006913 447 AFDRSITELEKKVAE 461 (626)
Q Consensus 447 ~~~~~~~~~~~~~~~ 461 (626)
.|||+|+.||++-|.
T Consensus 77 ~LdKtIS~LEMELAa 91 (95)
T PF13334_consen 77 SLDKTISSLEMELAA 91 (95)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999999763
No 190
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=28.88 E-value=5.3e+02 Score=28.47 Aligned_cols=82 Identities=18% Similarity=0.022 Sum_probs=39.9
Q ss_pred CCeEEEEeCCCCeEEEEEcCCCCCcc-eeeeeecCCeE-EEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeC
Q 006913 205 QGELYSLSAHSPYFNWIQDLSSFDKA-FTLTPGNNGYL-YVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSN 282 (626)
Q Consensus 205 ~GgL~~ld~~tg~~~w~~~~~s~~~v-~sI~~D~dG~L-wVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~d 282 (626)
..++|.+|.++++..-..+....+.. ..+..+ +..+ |+- .+..+..+|..|++..-.+..+..-......+.+++
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~-~~~~~Yv~--~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d 135 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPD-DRALYYVK--NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSD 135 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS-B-TTT-EE-TT-SSEEEEEE--TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TT
T ss_pred CcceEEEEcccCEEEECccCCCCCccceEEecC-CCeEEEEE--CCCeEEEEECCcCcEEEEEECCcccccccceeeCCC
Confidence 44799999999887654332221111 222333 4454 554 245889999999877554544421001223455667
Q ss_pred CeEEEEE
Q 006913 283 GWISVGS 289 (626)
Q Consensus 283 G~IWVGT 289 (626)
+..++|.
T Consensus 136 ~t~~~g~ 142 (386)
T PF14583_consen 136 CTKLVGI 142 (386)
T ss_dssp SSEEEEE
T ss_pred ccEEEEE
Confidence 8888775
No 191
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=28.88 E-value=4.2e+02 Score=29.68 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCeEEEEeC-CCCeEEEEEcCCCCCcceeeeeecCCeEEEEEc
Q 006913 196 EGSIYISNTQGELYSLSA-HSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIP 246 (626)
Q Consensus 196 dG~LwIGT~~GgL~~ld~-~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~ 246 (626)
++.|-|+..+ |++.++. ++.+..|..++.+.. + -+.-.+|.||+.+.
T Consensus 149 ~nvL~i~~~~-git~yn~~e~~k~vw~~~fnGsy-v--daRlynG~lYiv~r 196 (603)
T COG4880 149 GNVLAIGEVG-GITLYNLYESSKKVWVYNFNGSY-V--DARLYNGELYIVAR 196 (603)
T ss_pred CcEEEEEEeC-CEEEEEeccccceeEEEecCCce-e--eeeeeCCEEEEEEc
Confidence 6677788765 5899888 777889988765411 1 12235888998873
No 192
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=27.75 E-value=4.9e+02 Score=29.88 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=13.3
Q ss_pred eeeeecCCeEEEEEcCC
Q 006913 232 TLTPGNNGYLYVTIPVR 248 (626)
Q Consensus 232 sI~~D~dG~LwVGT~~g 248 (626)
.++.|.+|+|||+++.+
T Consensus 440 NL~~d~~G~LwI~eD~~ 456 (524)
T PF05787_consen 440 NLAFDPDGNLWIQEDGG 456 (524)
T ss_pred ceEECCCCCEEEEeCCC
Confidence 46778899999998643
No 193
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=27.68 E-value=1.4e+03 Score=29.24 Aligned_cols=63 Identities=13% Similarity=0.077 Sum_probs=41.9
Q ss_pred eEEEEEcCCeEEEEeCC-CcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcCCCeEEEEeCCCCe
Q 006913 141 SVYINVKGRALFAFMTH-GQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNTQGELYSLSAHSPY 217 (626)
Q Consensus 141 ~LwIgT~~gGL~a~d~~-G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~~GgL~~ld~~tg~ 217 (626)
.|..+|..+++..+|.. ....|.... ... +...+++++|.+.+=+.+||..|.+.++|.+-+.
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk~-------------~~~-hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLKN-------------QLR-HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred eEEEEEeccceEEecchhhhhHHhhhc-------------Ccc-ccceeEEEecCCceEEEEecCCceEEEEEeecCc
Confidence 56667888889999974 556676411 111 1234778899734445689999989999887644
No 194
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=26.30 E-value=37 Score=28.45 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=34.0
Q ss_pred eeehhhHHHHHHHHhheeeEEEeeccccccccchHHHHHHh-hhhhhhhhhhhhhhHHHHHHHh
Q 006913 398 LFLFFESVVLLVLAVLVRFCCIFWRKKKLQGQHLGNFLEKR-RSLQLKKKAFDRSITELEKKVA 460 (626)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 460 (626)
+||..+.++++|+.+.+=-++=+.+|+|.. +||..=.+++ ..|..+-+.+..+|--||.=..
T Consensus 4 ~fl~~Pliif~ifVap~wl~lHY~~k~~~~-~~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 4 FFLAIPLIIFVIFVAPLWLILHYRSKRKTA-ASLSTDDQALLQELYAKADRLEERIDTLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466666666665544443333334455544 5666544333 2455666666777777776444
No 195
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=26.11 E-value=30 Score=33.00 Aligned_cols=28 Identities=11% Similarity=0.110 Sum_probs=18.6
Q ss_pred hheeeEEEeeccccccccchHHHHHHhh
Q 006913 412 VLVRFCCIFWRKKKLQGQHLGNFLEKRR 439 (626)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (626)
.+|-|+.++|-=+|+-=.|+.++|++|+
T Consensus 14 ~~i~Flil~~ll~~~l~~pi~~~l~~R~ 41 (164)
T PRK14471 14 QTILFLILLLLLAKFAWKPILGAVKERE 41 (164)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444555444555678999999999
No 196
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=25.77 E-value=4.3e+02 Score=22.75 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=27.1
Q ss_pred CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEE
Q 006913 205 QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLAL 254 (626)
Q Consensus 205 ~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~al 254 (626)
.|.|.++|+.+++..-..+ +......++...|+. +.|+-.....+..+
T Consensus 36 ~GRll~ydp~t~~~~vl~~--~L~fpNGVals~d~~~vlv~Et~~~Ri~ry 84 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLD--GLYFPNGVALSPDESFVLVAETGRYRILRY 84 (89)
T ss_dssp -EEEEEEETTTTEEEEEEE--EESSEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred CcCEEEEECCCCeEEEehh--CCCccCeEEEcCCCCEEEEEeccCceEEEE
Confidence 5789999999987654332 112234566666764 55554434455444
No 197
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=25.48 E-value=2.3e+02 Score=19.52 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCEEEEEECCCCcEEEEEecC
Q 006913 238 NGYLYVTIPVRALVLALDTSSGNILWHKSVG 268 (626)
Q Consensus 238 dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~ 268 (626)
.++||++....+.+..+|..+++..-....+
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 4579998766678888998888766554443
No 198
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=25.48 E-value=23 Score=37.30 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=0.0
Q ss_pred HHhheeeEEEeeccccccccchHHHHHHhhhhhhhh
Q 006913 410 LAVLVRFCCIFWRKKKLQGQHLGNFLEKRRSLQLKK 445 (626)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (626)
+|+++-+|| |||||=-+..+ |.|.+...|.
T Consensus 161 IA~iIa~ic--yrrkR~GK~~~----ee~~~f~~KG 190 (290)
T PF05454_consen 161 IAGIIACIC--YRRKRKGKMSL----EEQKTFISKG 190 (290)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHh--hhhhhcccccc----chhHHHHhcC
Confidence 344444444 44443333333 7777766553
No 199
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=25.48 E-value=9.7e+02 Score=26.69 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=61.1
Q ss_pred EcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCe-EEEEEcCCCEEEEEECCCCcEEEEEecCCC--CCceeeEE
Q 006913 202 SNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGY-LYVTIPVRALVLALDTSSGNILWHKSVGPL--GSAEYAPV 278 (626)
Q Consensus 202 GT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~-LwVGT~~gG~l~alD~~tG~~~w~~~~~~l--~~~~sspv 278 (626)
|..++.|..+|.++.......+.++ .+.++-...+|. |...+ ....+-.+|..+..+...+..... +.-.+..+
T Consensus 318 gH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsss-RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 318 GHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSS-RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred cccccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeec-CCCceeeeecccccEEEEeeccccccccccceeE
Confidence 4457778889988877766555443 344444445563 44444 445677778777776655433321 11233344
Q ss_pred EeeCC-eEEEEEcCCeEEEEcCC-CCEEEEe
Q 006913 279 VDSNG-WISVGSLDGLLYSFSPS-GVLNKFS 307 (626)
Q Consensus 279 vD~dG-~IWVGT~~gGLy~~d~~-g~~~~~~ 307 (626)
+.+++ .+-.|+.+|.||.++.. |+.....
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEe
Confidence 55454 46668889999999975 5555443
No 200
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=24.59 E-value=70 Score=27.06 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=21.6
Q ss_pred cchHHHHHHhhhhhhhhhhhhhhhHHHHHHHhh
Q 006913 429 QHLGNFLEKRRSLQLKKKAFDRSITELEKKVAE 461 (626)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (626)
+.|..-|+||+.|+.+=..|.+.|-++|-.=-+
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777776666666667666655444
No 201
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=24.18 E-value=7e+02 Score=31.98 Aligned_cols=109 Identities=15% Similarity=0.223 Sum_probs=60.2
Q ss_pred EEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCC--CCcceeeeee-cCCeEEEEEcCCCEEEEEECCCC---cEEEE
Q 006913 191 VIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSS--FDKAFTLTPG-NNGYLYVTIPVRALVLALDTSSG---NILWH 264 (626)
Q Consensus 191 viD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s--~~~v~sI~~D-~dG~LwVGT~~gG~l~alD~~tG---~~~w~ 264 (626)
+..+ +|.||||..+ -|.++-+++ ++.-....+. ...-+-++++ -+|.|||..+....++.+....+ .--|.
T Consensus 371 a~a~-DGSl~VGDfN-yIRRI~~dg-~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~e 447 (1899)
T KOG4659|consen 371 AYAP-DGSLIVGDFN-YIRRISQDG-QVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYE 447 (1899)
T ss_pred EEcC-CCcEEEccch-heeeecCCC-ceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCee
Confidence 4465 8999999876 488887665 5544433331 1122345555 48899998654445555432211 11232
Q ss_pred EecCC------C------C--------CceeeEEEeeCCeEEEEEcCCeEEEEcCCCCE
Q 006913 265 KSVGP------L------G--------SAEYAPVVDSNGWISVGSLDGLLYSFSPSGVL 303 (626)
Q Consensus 265 ~~~~~------l------~--------~~~sspvvD~dG~IWVGT~~gGLy~~d~~g~~ 303 (626)
.-.+. . + .....+.+|++|.||+.. +-.|-.+|.+|-+
T Consensus 448 vvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD-~t~IR~iD~~giI 505 (1899)
T KOG4659|consen 448 VVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFAD-GTRIRVIDTTGII 505 (1899)
T ss_pred EEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEec-ccEEEEeccCceE
Confidence 21110 0 0 012346789999999975 3356666766543
No 202
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=24.10 E-value=9.1e+02 Score=25.87 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=36.4
Q ss_pred CceeeeeEEeeCCEEEE-Ee-C---CcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--C--CeEEEEEC
Q 006913 36 AFRLSKPLIGEDGKIYA-CS-E---KTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--E--NRVLKVDL 104 (626)
Q Consensus 36 ~~~~Sspvid~dG~IwI-gS-d---ggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~--ggL~~id~ 104 (626)
.....+|....+|+..+ ++ . ..|+.+|. +|......... ....++....+|+ |++.. + ..|+.++.
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~---~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP---GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC---CCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence 33445566656665333 33 2 25888887 56543212111 1233456666765 55543 2 35888888
Q ss_pred CCC
Q 006913 105 LKI 107 (626)
Q Consensus 105 ~~~ 107 (626)
.++
T Consensus 266 ~~~ 268 (417)
T TIGR02800 266 DGK 268 (417)
T ss_pred CCC
Confidence 765
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=23.36 E-value=1e+03 Score=26.14 Aligned_cols=92 Identities=22% Similarity=0.281 Sum_probs=43.3
Q ss_pred ceEEEcCCCe-EEEEcC-CC--eEEEEeCCCCeEEEEEcCCCCCcceeeeeecCC-eEEEEEcCCCEEEEEECCCCcEEE
Q 006913 189 VPVIDQCEGS-IYISNT-QG--ELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNG-YLYVTIPVRALVLALDTSSGNILW 263 (626)
Q Consensus 189 spviD~~dG~-LwIGT~-~G--gL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG-~LwVGT~~gG~l~alD~~tG~~~w 263 (626)
.+...+ +|. |++... +| .||.++..++..... .... ..+....|| .|+++. . ..++.+|..+|....
T Consensus 296 ~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~----~~~~~SpDG~~ia~~~-~-~~i~~~Dl~~g~~~~ 367 (429)
T PRK01742 296 EPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG----YSAQISADGKTLVMIN-G-DNVVKQDLTSGSTEV 367 (429)
T ss_pred CEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC----CCccCCCCCCEEEEEc-C-CCEEEEECCCCCeEE
Confidence 345543 443 555432 22 577777776654432 1111 122233455 444443 2 356668888886543
Q ss_pred EEecCCCCCceeeEEEeeCCe-EEEEEcCC
Q 006913 264 HKSVGPLGSAEYAPVVDSNGW-ISVGSLDG 292 (626)
Q Consensus 264 ~~~~~~l~~~~sspvvD~dG~-IWVGT~~g 292 (626)
..... ...++...++|. |+.++.++
T Consensus 368 lt~~~----~~~~~~~sPdG~~i~~~s~~g 393 (429)
T PRK01742 368 LSSTF----LDESPSISPNGIMIIYSSTQG 393 (429)
T ss_pred ecCCC----CCCCceECCCCCEEEEEEcCC
Confidence 21111 112355666775 44444444
No 204
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=22.81 E-value=9.5e+02 Score=25.64 Aligned_cols=252 Identities=11% Similarity=-0.022 Sum_probs=118.8
Q ss_pred CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCeEEEEE--CCeEEEEECCCCccccceeEEEecCCCCCCCCCCee
Q 006913 55 EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGEVYIVA--ENRVLKVDLLKIGTSESATQVFYGTGSGKGGTGAIA 131 (626)
Q Consensus 55 dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~IwVgT--~ggL~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~I 131 (626)
+|.|...|. +.....-++++. ..+.+....+.|+..... ++.-..|+..+... +-...... ....+. ..+
T Consensus 76 DGklIvWDs~TtnK~haipl~s--~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~-~g~~~v~r---~l~gHt-gyl 148 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKVHAIPLPS--SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA-EGNVRVSR---ELAGHT-GYL 148 (343)
T ss_pred CCeEEEEEcccccceeEEecCc--eeEEEEEECCCCCeEEecCcCceeEEEecccccc-cccceeee---eecCcc-cee
Confidence 455666665 433332333332 123344455677755543 55555555443210 00011110 001111 233
Q ss_pred EEEEEEcCCeEEEEEcCCeEEEEeC-CCcEEEEECCcccccccccccccCCCCCccccceEEEcCCCeEEEEcC-CCeEE
Q 006913 132 GIAVSTSSSSVYINVKGRALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVDCYFTSVPVIDQCEGSIYISNT-QGELY 209 (626)
Q Consensus 132 ~s~~~d~dG~LwIgT~~gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~~~i~sspviD~~dG~LwIGT~-~GgL~ 209 (626)
+.--...|+.|.-++.+.--...|. +|+..-.+.. +. ..+ .++.+.+++++.+|... +.-.+
T Consensus 149 ScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G------------H~---gDV-~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 149 SCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG------------HT---GDV-MSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred EEEEEcCCCceEecCCCceEEEEEcccceEEEEecC------------Cc---ccE-EEEecCCCCCCeEEeccccccee
Confidence 3332334777877776655556675 4766544311 00 111 22222223566666433 55556
Q ss_pred EEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEE-E
Q 006913 210 SLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISV-G 288 (626)
Q Consensus 210 ~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWV-G 288 (626)
..|.+.+.-.-...... .-+.++..-.+|.-++...+++..-.||......+-.+.......-+.+..+...|++.+ |
T Consensus 213 lWD~R~~~c~qtF~ghe-sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 213 LWDVRSGQCVQTFEGHE-SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAG 291 (343)
T ss_pred eeeccCcceeEeecccc-cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEee
Confidence 67777764432221111 113344444567666655455666667766665554444332111245566666676555 4
Q ss_pred EcCCeEEEEcC-CCCEEEEeeccCCCCccccCceEEEEEEecCCcEEEEEee
Q 006913 289 SLDGLLYSFSP-SGVLNKFSKSDTSDSVIQSSPYWFHLLGPSIGLKAILCLM 339 (626)
Q Consensus 289 T~~gGLy~~d~-~g~~~~~~~~~~~~~~ilssp~V~~Il~DsdG~IwI~T~t 339 (626)
-.+..++.+|. .++..-... -..|.|.+|-..+||.-. .|++
T Consensus 292 y~d~~c~vWDtlk~e~vg~L~--------GHeNRvScl~~s~DG~av-~TgS 334 (343)
T KOG0286|consen 292 YDDFTCNVWDTLKGERVGVLA--------GHENRVSCLGVSPDGMAV-ATGS 334 (343)
T ss_pred ecCCceeEeeccccceEEEee--------ccCCeeEEEEECCCCcEE-Eecc
Confidence 55668888885 344332211 134556666667777653 5544
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=22.32 E-value=1.1e+03 Score=25.99 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=56.5
Q ss_pred CCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEE-EEECCCCcEEEEEecCCCCCceeeEEEeeCC
Q 006913 205 QGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVL-ALDTSSGNILWHKSVGPLGSAEYAPVVDSNG 283 (626)
Q Consensus 205 ~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~-alD~~tG~~~w~~~~~~l~~~~sspvvD~dG 283 (626)
.|.|+.+|..+-+..-..+. --..+.+++...+|.+.......|.+. .+...+|..+.++..+.....+.+++.++++
T Consensus 152 ~GdV~l~d~~nl~~v~~I~a-H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINA-HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred CceEEEEEcccceeeeEEEe-cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence 56677777766443332221 012466788888998887655566654 4566788888776555221225668888888
Q ss_pred eEEEEEc-CCeEEEEc
Q 006913 284 WISVGSL-DGLLYSFS 298 (626)
Q Consensus 284 ~IWVGT~-~gGLy~~d 298 (626)
.+...+. .+.|+.|.
T Consensus 231 ~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFK 246 (391)
T ss_pred CeEEEecCCCeEEEEE
Confidence 7666653 34555553
No 206
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=22.06 E-value=50 Score=29.81 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=17.5
Q ss_pred hhhhhhhhhHHHHHHHhhhhhhhHhh
Q 006913 444 KKKAFDRSITELEKKVAEDAVANEVI 469 (626)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (626)
-...+-..+.|||++.++..++.+-.
T Consensus 37 n~~iyr~qL~ELe~d~~~G~l~~~e~ 62 (117)
T TIGR03142 37 NLAVYRDRLAELERDLAEGLLDEAEA 62 (117)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 34566777889998887665555433
No 207
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=21.99 E-value=1.1e+03 Score=26.10 Aligned_cols=109 Identities=15% Similarity=0.032 Sum_probs=53.7
Q ss_pred eEEEcCCCe-EEEEcCCCeEEEEeCCCCeEEEEEcCCCC-Ccceee-----eeecCCeEEEEEcCCCEEEEEECCCCcEE
Q 006913 190 PVIDQCEGS-IYISNTQGELYSLSAHSPYFNWIQDLSSF-DKAFTL-----TPGNNGYLYVTIPVRALVLALDTSSGNIL 262 (626)
Q Consensus 190 pviD~~dG~-LwIGT~~GgL~~ld~~tg~~~w~~~~~s~-~~v~sI-----~~D~dG~LwVGT~~gG~l~alD~~tG~~~ 262 (626)
+...+ +|. |--|..+|.|..+|+++|+..=. .+.+. ..+.++ ..+...+..+....+|.+...|...|..+
T Consensus 163 vawsP-Dgk~iASG~~dg~I~lwdpktg~~~g~-~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 163 VAWSP-DGKKIASGSKDGSIRLWDPKTGQQIGR-ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred EEECC-CcchhhccccCCeEEEecCCCCCcccc-cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE
Confidence 33343 443 44456688999999998865321 11110 111111 12233443333323344545554444433
Q ss_pred EEEecCCCCCceeeEEEeeCCeEEEEEcCCeEEEEcCC-CC
Q 006913 263 WHKSVGPLGSAEYAPVVDSNGWISVGSLDGLLYSFSPS-GV 302 (626)
Q Consensus 263 w~~~~~~l~~~~sspvvD~dG~IWVGT~~gGLy~~d~~-g~ 302 (626)
....... ..+..+.-..+|.||-|+.+..|-.++.. |.
T Consensus 241 ~~lsgHT--~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~ 279 (480)
T KOG0271|consen 241 RTLSGHT--ASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK 279 (480)
T ss_pred EEeccCc--cceEEEEEcCCceEEecCCCceEEEEEccchh
Confidence 2211100 11333444557899999998888777653 54
No 208
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=21.82 E-value=1e+02 Score=31.03 Aligned_cols=60 Identities=25% Similarity=0.409 Sum_probs=43.7
Q ss_pred hhhhhhhhHHHHHHHh--hhhhhhHhhhhe----eeeecccccccccCCCCCCccccCCCceee--cccccc
Q 006913 445 KKAFDRSITELEKKVA--EDAVANEVIKKS----VVCLGRDEAAASSESKSFPPVYDAKSRSYS--FQGAKK 508 (626)
Q Consensus 445 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 508 (626)
++...+.|-+|+.+.. +|..-+|+++|| ..+|++=+. --+++--+.++-.-||| |+++.+
T Consensus 201 ~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN~iL~pFGl----StdnFqmvqd~nTGsySi~fk~~~n 268 (271)
T KOG4234|consen 201 RREAREAIARLPPKINERNEKMKEEMMEKLKDLGNFILSPFGL----STDNFQMVQDPNTGSYSINFKGATN 268 (271)
T ss_pred hHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhhcccccc----cccceeeeeCCCCCceeEEecCCCC
Confidence 3466788888998888 788999999999 778887543 34556666777666665 777643
No 209
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.24 E-value=1.5e+03 Score=27.21 Aligned_cols=111 Identities=12% Similarity=0.019 Sum_probs=62.3
Q ss_pred ccceEEEcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCC---C----CCcceeeee--ecCCeEEEEEcCCCEEEEEECC
Q 006913 187 TSVPVIDQCEGSIYISNTQGELYSLSAHSPYFNWIQDLS---S----FDKAFTLTP--GNNGYLYVTIPVRALVLALDTS 257 (626)
Q Consensus 187 ~sspviD~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~---s----~~~v~sI~~--D~dG~LwVGT~~gG~l~alD~~ 257 (626)
++++.+-+.++...||+++|..+.|+..+.+++-..++. . ...+..+.. .....|.|.+. +..|-.+|..
T Consensus 454 ITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn-DSrIRI~d~~ 532 (712)
T KOG0283|consen 454 ITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN-DSRIRIYDGR 532 (712)
T ss_pred heeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecC-CCceEEEecc
Confidence 455556543556889999998899999887776443321 1 112333322 22236888775 4567777754
Q ss_pred CCcEEEEEe-cCCCCC-ceeeEEEeeCCeEEEEEcCCeEEEEcC
Q 006913 258 SGNILWHKS-VGPLGS-AEYAPVVDSNGWISVGSLDGLLYSFSP 299 (626)
Q Consensus 258 tG~~~w~~~-~~~l~~-~~sspvvD~dG~IWVGT~~gGLy~~d~ 299 (626)
+-..+..+. ....+. ...++..| +..|..|+.+..||.++.
T Consensus 533 ~~~lv~KfKG~~n~~SQ~~Asfs~D-gk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 533 DKDLVHKFKGFRNTSSQISASFSSD-GKHIVSASEDSWVYIWKN 575 (712)
T ss_pred chhhhhhhcccccCCcceeeeEccC-CCEEEEeecCceEEEEeC
Confidence 444332221 111111 22233333 456777888889999874
No 210
>PRK05137 tolB translocation protein TolB; Provisional
Probab=21.22 E-value=1.1e+03 Score=25.81 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=39.3
Q ss_pred ccCCceeeeeEEeeCCE-EEEEe----CCcEEEEcC-CCCEEEEEeCCCCCCcccCeEEecCCe-EEEEE--C--CeEEE
Q 006913 33 RRSAFRLSKPLIGEDGK-IYACS----EKTLFAFES-NGTIAWSLDLDFTCNIGTAPVHGGTGE-VYIVA--E--NRVLK 101 (626)
Q Consensus 33 ~~~~~~~Sspvid~dG~-IwIgS----dggL~a~d~-~G~~~W~~~~~~~~~i~~sp~iD~dG~-IwVgT--~--ggL~~ 101 (626)
.........|....||. |...+ ...|+.+|. +|...-..... .....+....+|. |.+.. + ..||.
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~---g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 274 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP---GMTFAPRFSPDGRKVVMSLSQGGNTDIYT 274 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC---CcccCcEECCCCCEEEEEEecCCCceEEE
Confidence 34445566777767775 33333 236888887 55532111111 1233566667775 44333 2 35888
Q ss_pred EECCCC
Q 006913 102 VDLLKI 107 (626)
Q Consensus 102 id~~~~ 107 (626)
+|..++
T Consensus 275 ~d~~~~ 280 (435)
T PRK05137 275 MDLRSG 280 (435)
T ss_pred EECCCC
Confidence 888765
No 211
>PF10940 DUF2618: Protein of unknown function (DUF2618); InterPro: IPR021237 This bacterial family of proteins has no known function. The sequences within the family are highly conserved.
Probab=21.09 E-value=34 Score=24.47 Aligned_cols=22 Identities=45% Similarity=0.600 Sum_probs=17.4
Q ss_pred CccccccccceeeeeccCCCcc
Q 006913 9 FHSYRSCFPFLTFASFSSSAKV 30 (626)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~ 30 (626)
.+++|+||-|.+|.+..+...+
T Consensus 17 mpshR~~Fd~~~f~s~~~~s~~ 38 (40)
T PF10940_consen 17 MPSHRSCFDFSFFNSQSSPSHY 38 (40)
T ss_pred chhhhcccchhhhhccCCcccc
Confidence 4789999999999987665443
No 212
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=20.41 E-value=1.1e+03 Score=25.55 Aligned_cols=244 Identities=16% Similarity=0.220 Sum_probs=109.1
Q ss_pred EEeeCC-EEEEEe----CCcE--EEEcC-CCCEEE--EEeCCCCCCcccCeEEecCCeEEEEE---CCeEEEEECCC-Cc
Q 006913 43 LIGEDG-KIYACS----EKTL--FAFES-NGTIAW--SLDLDFTCNIGTAPVHGGTGEVYIVA---ENRVLKVDLLK-IG 108 (626)
Q Consensus 43 vid~dG-~IwIgS----dggL--~a~d~-~G~~~W--~~~~~~~~~i~~sp~iD~dG~IwVgT---~ggL~~id~~~-~~ 108 (626)
.++.++ .||++. .+++ |.+|. +|++.. +..... ....-+.+|.+|+..+.+ .+.|..+..+. +.
T Consensus 46 ~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~ 123 (346)
T COG2706 46 AVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGS 123 (346)
T ss_pred EECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCc
Confidence 444444 688875 2444 56666 576532 111111 111335578888765555 34455444322 22
Q ss_pred cccceeEEEecCCCCCCC--CCCeeEEEEEEcCCe-EEEEEcC-CeEEEEeC-CCcEEEEECCcccccccccccccCCCC
Q 006913 109 TSESATQVFYGTGSGKGG--TGAIAGIAVSTSSSS-VYINVKG-RALFAFMT-HGQLLWSAGPVLDQLGYRQGCTKTDVD 183 (626)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~--~~~~I~s~~~d~dG~-LwIgT~~-gGL~a~d~-~G~~~w~~~~~~~~~~~~~~~~~~l~~ 183 (626)
. ++.............. ...-......+.+++ |++...+ ..++.|+. +|++.-.. + ..+ +. ..
T Consensus 124 l-~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~-~--~~v--~~----G~-- 191 (346)
T COG2706 124 L-QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD-P--AEV--KP----GA-- 191 (346)
T ss_pred c-ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc-c--ccc--CC----CC--
Confidence 1 1111111111111000 011234455566775 4443322 45777776 47653321 1 000 11 00
Q ss_pred CccccceEEEcCCCe-EEEEcC-CCeE--EEEeCCCCeEEEEEcCC-------CCCcceeeeeecCCe-EEEEEcCC---
Q 006913 184 CYFTSVPVIDQCEGS-IYISNT-QGEL--YSLSAHSPYFNWIQDLS-------SFDKAFTLTPGNNGY-LYVTIPVR--- 248 (626)
Q Consensus 184 ~~i~sspviD~~dG~-LwIGT~-~GgL--~~ld~~tg~~~w~~~~~-------s~~~v~sI~~D~dG~-LwVGT~~g--- 248 (626)
. ...++.-+ ++. .|+-+. ++.| +.+|...|++.-.+... +.....+|.+..||+ ||+. +++
T Consensus 192 G--PRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas-NRg~ds 267 (346)
T COG2706 192 G--PRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS-NRGHDS 267 (346)
T ss_pred C--cceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEe-cCCCCe
Confidence 0 12244443 444 466544 4444 44555556666554332 123345677888896 5554 333
Q ss_pred CEEEEEECCCCcEEEEEecCCCCCceeeEEEeeCCeEEEEE-cCC---eEEEEcCC-CCEE
Q 006913 249 ALVLALDTSSGNILWHKSVGPLGSAEYAPVVDSNGWISVGS-LDG---LLYSFSPS-GVLN 304 (626)
Q Consensus 249 G~l~alD~~tG~~~w~~~~~~l~~~~sspvvD~dG~IWVGT-~~g---GLy~~d~~-g~~~ 304 (626)
..++.+|+.+|..........-+.......+++.|++.+.. +++ -+|..|+. |++.
T Consensus 268 I~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 268 IAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred EEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 34667787777653221111001122334455556555443 322 45556653 5543
No 213
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=20.29 E-value=1e+03 Score=25.11 Aligned_cols=73 Identities=12% Similarity=0.014 Sum_probs=44.8
Q ss_pred EcCCCeEEEEcCCCeEEEEeCCCCeEEEEEcCCCCCcceeeeeecCCeEEEEEcCCCEEEEEECCCCcEEEEE
Q 006913 193 DQCEGSIYISNTQGELYSLSAHSPYFNWIQDLSSFDKAFTLTPGNNGYLYVTIPVRALVLALDTSSGNILWHK 265 (626)
Q Consensus 193 D~~dG~LwIGT~~GgL~~ld~~tg~~~w~~~~~s~~~v~sI~~D~dG~LwVGT~~gG~l~alD~~tG~~~w~~ 265 (626)
+..+..|..|..+|.|..+|.++|+........-...+..+....|.+.+|.......-..+|..+-..+-.+
T Consensus 156 g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 156 GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred cccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 3346678888889999999999986544321111123455666678888887543334444565565555444
Done!