Query 006916
Match_columns 625
No_of_seqs 382 out of 3371
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 12:21:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 5.4E-71 1.9E-75 628.3 48.1 524 25-616 1-546 (823)
2 3o21_A Glutamate receptor 3; p 100.0 8.9E-53 3E-57 434.6 41.1 369 23-420 2-380 (389)
3 3ks9_A Mglur1, metabotropic gl 100.0 1.3E-52 4.4E-57 445.7 39.1 391 22-454 13-496 (496)
4 4gpa_A Glutamate receptor 4; P 100.0 6.1E-52 2.1E-56 430.3 42.9 371 23-421 2-379 (389)
5 3sm9_A Mglur3, metabotropic gl 100.0 1.3E-52 4.5E-57 443.6 38.1 367 22-412 9-462 (479)
6 2e4u_A Metabotropic glutamate 100.0 7.3E-52 2.5E-56 447.6 42.4 390 22-457 10-486 (555)
7 3om0_A Glutamate receptor, ion 100.0 7.8E-51 2.7E-55 421.9 37.5 368 25-420 3-381 (393)
8 3mq4_A Mglur7, metabotropic gl 100.0 2.6E-52 8.9E-57 442.7 26.2 371 22-412 12-467 (481)
9 4f11_A Gamma-aminobutyric acid 100.0 7.6E-51 2.6E-55 427.8 35.9 368 22-414 10-404 (433)
10 3h6g_A Glutamate receptor, ion 100.0 2.2E-50 7.4E-55 419.0 38.4 369 24-420 2-383 (395)
11 1jdp_A NPR-C, atrial natriuret 100.0 5.5E-50 1.9E-54 422.1 41.7 363 23-416 6-397 (441)
12 3hsy_A Glutamate receptor 2; l 100.0 8.2E-50 2.8E-54 411.1 37.1 363 25-418 1-372 (376)
13 1dp4_A Atrial natriuretic pept 100.0 2.4E-49 8.3E-54 416.8 37.3 360 25-415 1-398 (435)
14 3qek_A NMDA glutamate receptor 100.0 4.2E-49 1.4E-53 407.5 34.3 341 23-413 2-369 (384)
15 3saj_A Glutamate receptor 1; r 100.0 1.8E-48 6.2E-53 402.5 37.0 363 22-420 6-377 (384)
16 3qel_B Glutamate [NMDA] recept 100.0 3.7E-43 1.3E-47 357.8 27.1 340 24-419 2-356 (364)
17 3i45_A Twin-arginine transloca 100.0 1.3E-39 4.3E-44 337.1 34.1 353 23-419 2-365 (387)
18 3h5l_A Putative branched-chain 100.0 1.1E-39 3.7E-44 341.2 29.1 330 22-389 10-361 (419)
19 3ipc_A ABC transporter, substr 100.0 8.8E-39 3E-43 327.0 31.6 345 25-414 1-352 (356)
20 4f06_A Extracellular ligand-bi 100.0 1.5E-38 5.1E-43 326.6 31.6 337 23-400 2-346 (371)
21 1usg_A Leucine-specific bindin 100.0 1.4E-37 4.6E-42 316.9 31.6 340 25-408 1-345 (346)
22 3td9_A Branched chain amino ac 100.0 1.4E-37 4.8E-42 319.3 30.9 342 22-414 12-363 (366)
23 3i09_A Periplasmic branched-ch 100.0 3.9E-37 1.3E-41 317.0 33.6 333 24-402 2-341 (375)
24 3hut_A Putative branched-chain 100.0 5.9E-37 2E-41 313.7 33.4 344 24-413 2-353 (358)
25 3eaf_A ABC transporter, substr 100.0 5E-37 1.7E-41 318.0 31.6 350 24-414 2-372 (391)
26 3n0w_A ABC branched chain amin 100.0 5.5E-37 1.9E-41 316.4 31.6 336 23-403 3-346 (379)
27 3lkb_A Probable branched-chain 100.0 4.3E-37 1.5E-41 318.8 28.5 350 23-415 4-376 (392)
28 4gnr_A ABC transporter substra 100.0 1.8E-36 6.3E-41 309.3 32.4 336 23-409 4-349 (353)
29 4evq_A Putative ABC transporte 100.0 2.1E-36 7.2E-41 311.7 32.3 345 22-413 12-363 (375)
30 3lop_A Substrate binding perip 100.0 1E-36 3.6E-41 312.5 29.6 344 24-410 3-359 (364)
31 3n0x_A Possible substrate bind 100.0 4.5E-37 1.5E-41 316.2 26.2 332 24-402 2-347 (374)
32 4eyg_A Twin-arginine transloca 100.0 3.6E-36 1.2E-40 309.1 31.9 347 23-413 3-359 (368)
33 1pea_A Amidase operon; gene re 100.0 2.7E-33 9.1E-38 289.3 34.9 348 23-411 4-357 (385)
34 3sg0_A Extracellular ligand-bi 100.0 9.6E-35 3.3E-39 300.5 23.9 343 22-407 23-384 (386)
35 3snr_A Extracellular ligand-bi 100.0 5.5E-33 1.9E-37 284.7 27.1 340 23-407 4-360 (362)
36 2h4a_A YRAM (HI1655); perplasm 99.9 1.2E-26 4.2E-31 230.6 19.4 307 28-408 2-317 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 99.9 4.7E-26 1.6E-30 229.1 20.4 311 27-409 3-320 (327)
38 1yae_A Glutamate receptor, ion 99.5 2.1E-14 7.2E-19 143.0 5.7 119 460-583 11-142 (312)
39 1pb7_A N-methyl-D-aspartate re 99.4 9.6E-14 3.3E-18 136.6 6.8 104 462-570 41-154 (292)
40 2a5s_A N-methyl-D-aspartate re 99.4 1.8E-13 6.3E-18 134.1 7.6 111 458-570 25-142 (284)
41 3g3k_A Glutamate receptor, ion 99.4 2.5E-13 8.5E-18 131.3 7.9 107 461-570 3-119 (259)
42 4h5g_A Amino acid ABC superfam 99.4 3.8E-13 1.3E-17 128.6 8.2 98 462-570 12-111 (243)
43 2rc8_A Glutamate [NMDA] recept 99.4 2.3E-13 8E-18 134.1 6.0 83 486-570 67-153 (294)
44 4gvo_A LMO2349 protein; struct 99.4 5.6E-13 1.9E-17 127.4 7.0 97 460-568 7-104 (243)
45 2v3u_A Glutamate receptor delt 99.3 2.5E-12 8.6E-17 124.5 9.1 105 461-570 2-115 (265)
46 1mqi_A Glutamate receptor 2; G 99.3 2.8E-12 9.5E-17 124.1 7.9 105 461-570 3-119 (263)
47 3i6v_A Periplasmic His/Glu/Gln 99.2 4.9E-12 1.7E-16 119.9 6.5 98 461-570 4-101 (232)
48 3kzg_A Arginine 3RD transport 99.2 4E-11 1.4E-15 113.9 8.8 97 462-570 3-100 (237)
49 3kbr_A Cyclohexadienyl dehydra 99.2 2.9E-11 9.8E-16 115.0 6.5 98 461-570 14-111 (239)
50 3tql_A Arginine-binding protei 99.1 1.2E-10 3.9E-15 109.6 10.0 97 462-570 2-98 (227)
51 4f3p_A Glutamine-binding perip 99.1 1.1E-10 3.7E-15 111.8 9.7 98 460-570 22-119 (249)
52 3k4u_A Binding component of AB 99.1 5.3E-11 1.8E-15 113.6 7.1 98 461-570 4-101 (245)
53 4dz1_A DALS D-alanine transpor 99.1 2.7E-10 9.2E-15 109.8 10.8 99 460-570 27-125 (259)
54 1lst_A Lysine, arginine, ornit 99.1 8.8E-11 3E-15 111.6 7.3 98 461-570 3-100 (239)
55 3mpk_A Virulence sensor protei 99.1 3.2E-10 1.1E-14 109.8 10.6 98 461-570 31-128 (267)
56 3hv1_A Polar amino acid ABC up 99.1 1.2E-10 4.1E-15 112.8 7.6 98 461-570 20-117 (268)
57 2iee_A ORF2, probable ABC tran 99.1 1.2E-10 4E-15 113.2 6.9 99 461-570 20-120 (271)
58 1ii5_A SLR1257 protein; membra 99.1 4.9E-10 1.7E-14 105.8 10.3 99 461-570 3-104 (233)
59 1wdn_A GLNBP, glutamine bindin 99.0 4.5E-10 1.5E-14 105.4 9.7 96 462-570 3-98 (226)
60 4eq9_A ABC transporter substra 99.0 2.7E-10 9.4E-15 108.6 8.0 95 461-568 7-102 (246)
61 3h7m_A Sensor protein; histidi 99.0 5.9E-10 2E-14 105.3 9.7 98 461-571 10-107 (234)
62 2y7i_A STM4351; arginine-bindi 99.0 4E-10 1.4E-14 106.1 8.3 98 461-570 5-103 (229)
63 2q88_A EHUB, putative ABC tran 99.0 3.3E-10 1.1E-14 108.9 7.8 97 461-570 12-109 (257)
64 3del_B Arginine binding protei 99.0 8.1E-10 2.8E-14 105.1 8.9 97 461-570 10-108 (242)
65 2pyy_A Ionotropic glutamate re 98.9 1.3E-09 4.4E-14 102.4 6.3 96 462-570 3-98 (228)
66 2pvu_A ARTJ; basic amino acid 98.9 3.2E-09 1.1E-13 103.0 8.7 98 460-570 40-137 (272)
67 2vha_A Periplasmic binding tra 98.8 5.8E-09 2E-13 102.0 8.2 98 461-570 16-120 (287)
68 2yln_A Putative ABC transporte 98.8 9.2E-09 3.1E-13 100.4 7.5 98 461-570 56-154 (283)
69 4i62_A Amino acid ABC transpor 98.8 1.3E-08 4.3E-13 98.4 8.0 98 461-570 38-138 (269)
70 1xt8_A Putative amino-acid tra 98.7 1.2E-08 4E-13 100.2 7.7 98 461-570 43-143 (292)
71 3qax_A Probable ABC transporte 98.7 2E-08 7E-13 96.8 8.3 97 461-570 30-128 (268)
72 2v25_A Major cell-binding fact 98.7 2.2E-08 7.6E-13 96.0 8.3 99 461-570 37-138 (259)
73 2yjp_A Putative ABC transporte 98.7 2.5E-08 8.7E-13 97.7 8.3 97 462-570 55-154 (291)
74 3brq_A HTH-type transcriptiona 98.3 2.3E-05 7.8E-10 76.5 18.5 209 23-251 16-232 (296)
75 2h3h_A Sugar ABC transporter, 98.3 7.6E-05 2.6E-09 73.5 21.2 198 27-243 2-206 (313)
76 3ksm_A ABC-type sugar transpor 98.2 6.7E-05 2.3E-09 72.2 19.5 199 27-243 1-211 (276)
77 1dbq_A Purine repressor; trans 98.2 0.00012 4.1E-09 71.0 20.0 209 24-251 5-219 (289)
78 2qh8_A Uncharacterized protein 98.2 8.9E-05 3.1E-09 72.6 18.8 190 23-228 5-203 (302)
79 2qu7_A Putative transcriptiona 98.2 2.1E-05 7.3E-10 76.5 14.0 207 23-251 5-219 (288)
80 2rjo_A Twin-arginine transloca 98.2 0.0002 7E-09 71.0 21.5 205 25-244 4-222 (332)
81 3rot_A ABC sugar transporter, 98.1 9E-05 3.1E-09 72.3 18.0 203 26-246 3-215 (297)
82 3d02_A Putative LACI-type tran 98.1 0.00031 1E-08 68.7 21.7 202 25-244 3-214 (303)
83 3brs_A Periplasmic binding pro 98.1 0.0002 6.9E-09 69.4 20.1 202 25-244 4-215 (289)
84 3l49_A ABC sugar (ribose) tran 98.1 0.00025 8.4E-09 68.9 19.4 201 25-244 4-216 (291)
85 3c3k_A Alanine racemase; struc 98.0 0.00043 1.5E-08 67.0 20.7 205 24-252 6-217 (285)
86 1tjy_A Sugar transport protein 98.0 0.00052 1.8E-08 67.6 21.3 196 28-242 5-212 (316)
87 3lkv_A Uncharacterized conserv 98.0 0.00036 1.2E-08 68.1 20.0 204 23-242 5-220 (302)
88 2x7x_A Sensor protein; transfe 98.0 0.00038 1.3E-08 68.8 20.0 201 24-243 4-212 (325)
89 3dbi_A Sugar-binding transcrip 98.0 0.00021 7.3E-09 71.1 17.8 209 24-251 59-274 (338)
90 2fep_A Catabolite control prot 98.0 0.00035 1.2E-08 67.7 18.9 209 23-251 13-227 (289)
91 2fn9_A Ribose ABC transporter, 98.0 0.00044 1.5E-08 67.1 19.6 197 27-243 3-215 (290)
92 2iks_A DNA-binding transcripti 98.0 0.0005 1.7E-08 66.8 19.7 208 23-251 17-229 (293)
93 3h75_A Periplasmic sugar-bindi 98.0 0.00094 3.2E-08 66.7 22.1 212 26-251 3-237 (350)
94 3lft_A Uncharacterized protein 98.0 0.00075 2.6E-08 65.6 20.6 199 26-243 2-210 (295)
95 3o1i_D Periplasmic protein TOR 97.9 0.00031 1.1E-08 68.6 17.7 205 25-244 4-218 (304)
96 2fvy_A D-galactose-binding per 97.9 0.00073 2.5E-08 66.1 20.0 204 27-242 3-226 (309)
97 2h0a_A TTHA0807, transcription 97.9 6.8E-05 2.3E-09 72.3 12.3 203 28-252 1-213 (276)
98 3o74_A Fructose transport syst 97.9 0.00035 1.2E-08 67.0 17.2 205 27-253 3-214 (272)
99 3d8u_A PURR transcriptional re 97.9 0.00077 2.6E-08 64.7 19.5 207 26-252 3-214 (275)
100 2rgy_A Transcriptional regulat 97.9 0.00031 1.1E-08 68.2 16.8 208 24-251 6-221 (290)
101 3gbv_A Putative LACI-family tr 97.9 0.00037 1.3E-08 68.1 17.3 214 23-254 5-232 (304)
102 2ioy_A Periplasmic sugar-bindi 97.9 0.0022 7.4E-08 61.8 22.6 197 27-243 2-207 (283)
103 2vk2_A YTFQ, ABC transporter p 97.9 0.00071 2.4E-08 66.2 19.3 209 26-251 2-223 (306)
104 3g1w_A Sugar ABC transporter; 97.9 0.0017 5.8E-08 63.3 22.0 211 26-254 4-221 (305)
105 2o20_A Catabolite control prot 97.9 0.00045 1.5E-08 68.5 18.0 209 24-252 61-272 (332)
106 3l6u_A ABC-type sugar transpor 97.9 0.00088 3E-08 65.0 19.8 202 23-244 5-220 (293)
107 3bbl_A Regulatory protein of L 97.9 0.00041 1.4E-08 67.2 16.8 205 25-249 3-218 (287)
108 3clk_A Transcription regulator 97.9 0.00018 6.2E-09 69.9 14.0 208 24-251 6-217 (290)
109 8abp_A L-arabinose-binding pro 97.9 0.00088 3E-08 65.4 19.1 211 25-251 1-228 (306)
110 3k4h_A Putative transcriptiona 97.8 0.00077 2.6E-08 65.3 18.3 210 23-251 5-224 (292)
111 1jx6_A LUXP protein; protein-l 97.8 0.0015 5.3E-08 64.9 20.2 208 23-243 40-258 (342)
112 1qpz_A PURA, protein (purine n 97.8 0.0015 5E-08 65.0 19.9 209 24-251 56-270 (340)
113 3gv0_A Transcriptional regulat 97.8 0.0017 5.9E-08 62.7 19.8 211 24-252 6-221 (288)
114 2hsg_A Glucose-resistance amyl 97.8 0.00041 1.4E-08 68.8 15.4 205 23-247 57-267 (332)
115 3egc_A Putative ribose operon 97.7 0.00041 1.4E-08 67.3 14.5 209 24-252 6-219 (291)
116 3jy6_A Transcriptional regulat 97.7 0.0016 5.4E-08 62.6 18.5 207 23-253 4-215 (276)
117 3gyb_A Transcriptional regulat 97.7 0.0002 6.7E-09 69.2 12.0 202 25-251 4-208 (280)
118 3k9c_A Transcriptional regulat 97.7 0.0025 8.6E-08 61.6 19.5 208 22-252 8-218 (289)
119 3m9w_A D-xylose-binding peripl 97.7 0.0027 9.3E-08 62.2 19.8 200 26-244 2-213 (313)
120 3kjx_A Transcriptional regulat 97.7 0.0015 5E-08 65.1 18.0 210 23-252 65-280 (344)
121 3ctp_A Periplasmic binding pro 97.7 0.00049 1.7E-08 68.2 14.1 203 24-252 58-264 (330)
122 2ozz_A Hypothetical protein YH 97.7 2E-05 6.9E-10 72.3 3.3 76 484-570 27-108 (231)
123 3kke_A LACI family transcripti 97.7 0.001 3.4E-08 65.0 15.9 205 23-249 12-227 (303)
124 3tb6_A Arabinose metabolism tr 97.7 0.0012 4.2E-08 64.1 16.4 210 26-252 15-234 (298)
125 3hcw_A Maltose operon transcri 97.6 0.0047 1.6E-07 59.9 20.0 212 24-252 5-225 (295)
126 3g85_A Transcriptional regulat 97.6 0.0012 4.1E-08 63.9 15.3 209 22-252 7-221 (289)
127 3qk7_A Transcriptional regulat 97.6 0.0024 8.2E-08 61.9 16.8 207 24-251 4-219 (294)
128 3bil_A Probable LACI-family tr 97.5 0.0041 1.4E-07 62.0 18.9 206 25-251 65-273 (348)
129 3e3m_A Transcriptional regulat 97.5 0.0067 2.3E-07 60.6 20.1 210 24-252 68-283 (355)
130 3h5o_A Transcriptional regulat 97.4 0.0073 2.5E-07 59.9 18.6 208 24-252 60-272 (339)
131 4fe7_A Xylose operon regulator 97.4 0.0065 2.2E-07 62.1 18.5 209 23-252 22-236 (412)
132 3e61_A Putative transcriptiona 97.4 0.0029 9.9E-08 60.7 14.8 201 24-252 6-210 (277)
133 2dri_A D-ribose-binding protei 97.4 0.022 7.4E-07 54.3 20.9 196 28-243 3-206 (271)
134 3cs3_A Sugar-binding transcrip 97.4 0.012 4.2E-07 56.3 18.9 200 23-252 5-210 (277)
135 3huu_A Transcription regulator 97.3 0.0085 2.9E-07 58.3 17.2 203 23-249 19-232 (305)
136 3hs3_A Ribose operon repressor 97.3 0.0042 1.4E-07 59.6 14.6 198 23-252 7-211 (277)
137 1gud_A ALBP, D-allose-binding 97.3 0.051 1.7E-06 52.2 22.3 208 28-254 3-227 (288)
138 1byk_A Protein (trehalose oper 97.2 0.021 7.2E-07 53.7 18.9 190 27-243 3-196 (255)
139 3jvd_A Transcriptional regulat 97.2 0.023 7.8E-07 56.1 19.4 198 24-251 62-263 (333)
140 2fqx_A Membrane lipoprotein TM 97.1 0.047 1.6E-06 53.4 20.8 208 25-253 3-221 (318)
141 1jye_A Lactose operon represso 97.1 0.037 1.3E-06 54.9 20.2 205 24-252 59-271 (349)
142 3uug_A Multiple sugar-binding 97.1 0.021 7.2E-07 56.1 18.2 206 25-247 2-232 (330)
143 3s99_A Basic membrane lipoprot 97.1 0.026 8.9E-07 56.0 18.0 203 22-242 22-229 (356)
144 2hqb_A Transcriptional activat 97.0 0.14 4.6E-06 49.5 22.6 196 25-242 4-204 (296)
145 3miz_A Putative transcriptiona 97.0 0.0014 4.9E-08 63.8 8.1 209 23-249 10-227 (301)
146 3h5t_A Transcriptional regulat 96.5 0.056 1.9E-06 54.0 15.5 212 24-251 66-300 (366)
147 3qi7_A Putative transcriptiona 96.3 0.15 5E-06 50.1 16.6 216 24-245 10-251 (371)
148 3ixl_A Amdase, arylmalonate de 96.2 0.11 3.8E-06 48.1 14.7 127 83-237 58-199 (240)
149 3n5l_A Binding protein compone 94.4 0.024 8.3E-07 55.2 3.8 92 461-570 3-102 (310)
150 2xed_A Putative maleate isomer 93.0 2 6.9E-05 40.5 14.4 118 84-229 83-219 (273)
151 3p7i_A PHND, subunit of alkylp 92.6 0.13 4.6E-06 50.1 5.7 92 461-570 13-112 (321)
152 2eq5_A 228AA long hypothetical 89.3 4.5 0.00015 36.8 12.4 165 25-228 5-184 (228)
153 2fqx_A Membrane lipoprotein TM 87.9 10 0.00036 36.4 14.7 126 28-160 131-264 (318)
154 3s99_A Basic membrane lipoprot 86.0 7.5 0.00026 38.1 12.4 90 26-124 149-238 (356)
155 3ix1_A N-formyl-4-amino-5-amin 85.2 0.62 2.1E-05 44.8 4.1 78 485-570 15-96 (302)
156 3bfj_A 1,3-propanediol oxidore 83.5 4.4 0.00015 40.4 9.6 88 149-238 23-114 (387)
157 2dgd_A 223AA long hypothetical 83.2 11 0.00039 33.9 11.6 80 147-229 96-182 (223)
158 1jfl_A Aspartate racemase; alp 82.6 11 0.00037 34.2 11.2 80 82-190 65-144 (228)
159 3uif_A Sulfonate ABC transport 81.8 1.9 6.6E-05 42.3 6.1 69 494-570 35-109 (348)
160 3qsl_A Putative exported prote 81.7 2.3 7.9E-05 41.4 6.7 65 498-570 58-126 (346)
161 2hqb_A Transcriptional activat 81.6 17 0.00059 34.3 12.8 121 27-161 127-248 (296)
162 2l82_A Designed protein OR32; 81.4 16 0.00054 27.8 9.5 96 137-243 5-104 (162)
163 3ox4_A Alcohol dehydrogenase 2 80.4 2.4 8.3E-05 42.2 6.3 90 148-239 20-111 (383)
164 2zsk_A PH1733, 226AA long hypo 79.3 11 0.00038 34.1 10.0 76 87-191 69-144 (226)
165 4ddd_A Immunogenic protein; ss 76.9 3.8 0.00013 39.8 6.4 90 461-570 31-136 (327)
166 1rrm_A Lactaldehyde reductase; 75.1 4.6 0.00016 40.2 6.6 89 149-239 21-111 (386)
167 1vlj_A NADH-dependent butanol 75.0 8.7 0.0003 38.5 8.6 87 149-237 33-122 (407)
168 3un6_A Hypothetical protein sa 74.3 1.8 6E-05 42.4 3.2 63 500-570 78-143 (341)
169 2gzm_A Glutamate racemase; enz 73.1 17 0.00058 33.9 9.6 37 84-120 58-94 (267)
170 4a8t_A Putrescine carbamoyltra 72.0 70 0.0024 30.8 13.7 134 26-193 63-205 (339)
171 4a8p_A Putrescine carbamoyltra 71.4 77 0.0026 30.7 14.5 134 26-193 41-183 (355)
172 3uhj_A Probable glycerol dehyd 71.2 6 0.0002 39.3 6.2 75 149-229 43-117 (387)
173 1mkz_A Molybdenum cofactor bio 71.0 19 0.00065 30.9 8.7 65 160-228 11-79 (172)
174 1o2d_A Alcohol dehydrogenase, 70.4 14 0.00046 36.5 8.7 88 148-238 30-120 (371)
175 3s81_A Putative aspartate race 69.8 7.3 0.00025 36.4 6.2 39 81-120 89-127 (268)
176 2oho_A Glutamate racemase; iso 68.8 16 0.00054 34.2 8.4 79 86-191 69-149 (273)
177 2x26_A Periplasmic aliphatic s 67.5 7.9 0.00027 36.8 6.2 65 497-570 24-95 (308)
178 2l69_A Rossmann 2X3 fold prote 66.3 36 0.0012 25.0 8.4 48 141-191 58-105 (134)
179 2dwu_A Glutamate racemase; iso 65.6 56 0.0019 30.5 11.5 37 84-120 62-98 (276)
180 2q5c_A NTRC family transcripti 65.3 71 0.0024 27.9 15.4 159 26-244 4-162 (196)
181 1zuw_A Glutamate racemase 1; ( 64.9 35 0.0012 31.8 9.9 40 81-120 55-95 (272)
182 2jfq_A Glutamate racemase; cel 64.9 33 0.0011 32.3 9.7 36 85-120 78-113 (286)
183 3m9w_A D-xylose-binding peripl 64.7 23 0.00078 33.6 8.9 79 160-243 3-84 (313)
184 3ist_A Glutamate racemase; str 63.1 27 0.00092 32.5 8.6 59 61-120 28-96 (269)
185 3tpf_A Otcase, ornithine carba 61.6 1.1E+02 0.0038 28.9 13.0 133 27-193 37-176 (307)
186 3r7f_A Aspartate carbamoyltran 61.0 44 0.0015 31.6 9.7 135 27-193 37-179 (304)
187 1b73_A Glutamate racemase; iso 59.9 43 0.0015 30.8 9.4 117 83-228 54-180 (254)
188 1duv_G Octase-1, ornithine tra 59.9 1.2E+02 0.0042 29.0 13.3 135 26-193 44-186 (333)
189 3ce9_A Glycerol dehydrogenase; 59.7 21 0.00071 34.9 7.6 96 150-255 25-122 (354)
190 4dik_A Flavoprotein; TM0755, e 58.8 53 0.0018 32.7 10.5 91 160-257 266-364 (410)
191 1jq5_A Glycerol dehydrogenase; 58.6 18 0.00063 35.5 7.0 82 150-236 23-106 (370)
192 2vvt_A Glutamate racemase; iso 58.6 33 0.0011 32.3 8.5 38 83-120 78-115 (290)
193 3g1w_A Sugar ABC transporter; 58.3 22 0.00075 33.5 7.5 80 160-243 5-87 (305)
194 4ep1_A Otcase, ornithine carba 58.1 1.3E+02 0.0043 29.0 12.4 133 27-193 71-209 (340)
195 3hl0_A Maleylacetate reductase 58.0 20 0.00067 35.1 7.0 82 148-235 23-106 (353)
196 1i6a_A OXYR, hydrogen peroxide 57.3 26 0.00088 30.8 7.4 82 461-568 4-85 (219)
197 2jfn_A Glutamate racemase; cel 56.7 60 0.0021 30.4 10.0 34 87-120 79-113 (285)
198 1y5e_A Molybdenum cofactor bio 56.5 49 0.0017 28.1 8.5 68 157-228 11-82 (169)
199 3gbv_A Putative LACI-family tr 55.7 37 0.0013 31.7 8.6 84 158-243 7-95 (304)
200 2pju_A Propionate catabolism o 55.3 82 0.0028 28.3 10.1 135 66-244 39-174 (225)
201 3l49_A ABC sugar (ribose) tran 55.2 27 0.00094 32.5 7.5 79 160-243 6-87 (291)
202 3jzd_A Iron-containing alcohol 55.1 17 0.00058 35.6 6.0 96 148-254 25-122 (358)
203 3jy6_A Transcriptional regulat 54.8 29 0.00099 32.1 7.5 78 159-243 7-86 (276)
204 3ksx_A Nitrate transport prote 54.5 28 0.00097 33.2 7.6 65 498-570 51-121 (324)
205 3ojc_A Putative aspartate/glut 54.1 8.6 0.0003 35.0 3.5 78 85-191 70-148 (231)
206 3p6l_A Sugar phosphate isomera 54.0 68 0.0023 29.2 9.9 94 147-243 24-129 (262)
207 1oth_A Protein (ornithine tran 53.4 1.6E+02 0.0053 28.1 12.8 133 26-193 46-185 (321)
208 2pjk_A 178AA long hypothetical 53.3 55 0.0019 28.2 8.3 67 157-227 13-90 (178)
209 2l69_A Rossmann 2X3 fold prote 52.9 66 0.0023 23.7 7.3 100 133-242 25-125 (134)
210 3gd5_A Otcase, ornithine carba 52.3 1.6E+02 0.0056 28.0 13.3 133 27-193 49-187 (323)
211 1twy_A ABC transporter, peripl 52.1 26 0.00088 32.4 6.7 70 491-570 42-113 (290)
212 3tb6_A Arabinose metabolism tr 51.9 41 0.0014 31.3 8.2 79 160-243 16-100 (298)
213 4h31_A Otcase, ornithine carba 51.9 1.5E+02 0.0052 28.7 12.0 134 27-193 71-212 (358)
214 3rfq_A Pterin-4-alpha-carbinol 51.2 42 0.0014 29.1 7.2 65 160-228 31-99 (185)
215 1dxh_A Ornithine carbamoyltran 51.1 1.7E+02 0.0058 28.1 12.0 133 26-193 45-186 (335)
216 2is8_A Molybdopterin biosynthe 50.9 52 0.0018 27.8 7.7 64 161-228 3-72 (164)
217 1vlv_A Otcase, ornithine carba 50.7 1.7E+02 0.0059 27.8 13.3 134 26-193 58-198 (325)
218 3k9c_A Transcriptional regulat 50.5 1.5E+02 0.0052 27.2 12.3 119 27-156 127-253 (289)
219 2ql3_A Probable transcriptiona 50.5 46 0.0016 28.7 7.8 83 461-569 4-86 (209)
220 3h75_A Periplasmic sugar-bindi 50.3 35 0.0012 32.9 7.6 80 159-243 3-87 (350)
221 3oxn_A Putative transcriptiona 50.0 59 0.002 28.9 8.7 84 461-570 18-101 (241)
222 1zbm_A Hypothetical protein AF 49.7 18 0.00062 33.7 5.1 50 520-569 45-97 (280)
223 3qvl_A Putative hydantoin race 49.5 1.5E+02 0.0052 26.9 12.7 170 27-236 2-193 (245)
224 3ho7_A OXYR; beta-alpha-barrel 49.1 30 0.001 30.5 6.5 83 461-569 10-92 (232)
225 2x7q_A Ca3427, possible thiami 48.9 25 0.00087 33.5 6.2 72 492-570 32-109 (321)
226 1ccw_A Protein (glutamate muta 48.6 95 0.0033 25.2 8.8 84 161-254 5-93 (137)
227 3grf_A Ornithine carbamoyltran 48.4 1.9E+02 0.0064 27.6 13.5 133 27-193 45-192 (328)
228 8abp_A L-arabinose-binding pro 48.4 55 0.0019 30.6 8.5 77 161-243 4-83 (306)
229 3o74_A Fructose transport syst 48.2 19 0.00064 33.2 5.0 79 160-243 3-83 (272)
230 1nrz_A PTS system, sorbose-spe 47.5 50 0.0017 28.0 6.9 80 146-235 14-93 (164)
231 3uug_A Multiple sugar-binding 46.7 49 0.0017 31.4 7.9 79 160-243 4-85 (330)
232 3l6u_A ABC-type sugar transpor 46.1 37 0.0013 31.5 6.8 80 159-243 8-90 (293)
233 1atg_A MODA, periplasmic molyb 46.1 17 0.00059 32.2 4.2 71 491-570 14-90 (231)
234 1i4n_A Indole-3-glycerol phosp 46.1 1E+02 0.0034 28.3 9.2 86 148-244 64-152 (251)
235 2y7p_A LYSR-type regulatory pr 45.9 49 0.0017 29.1 7.3 84 461-570 7-90 (218)
236 3lmz_A Putative sugar isomeras 45.4 82 0.0028 28.6 8.9 94 147-243 32-127 (257)
237 1tjy_A Sugar transport protein 45.1 29 0.00098 33.0 5.9 80 160-243 4-86 (316)
238 2bon_A Lipid kinase; DAG kinas 45.0 71 0.0024 30.7 8.7 75 160-240 30-104 (332)
239 3dbi_A Sugar-binding transcrip 44.9 72 0.0025 30.4 8.8 86 152-242 54-143 (338)
240 1vsq_C Mannose-specific phosph 44.7 51 0.0017 28.0 6.5 80 146-235 17-96 (165)
241 3brq_A HTH-type transcriptiona 44.7 78 0.0027 29.2 8.9 84 154-243 14-102 (296)
242 2g2c_A Putative molybdenum cof 44.3 78 0.0027 26.8 7.8 64 161-228 7-79 (167)
243 3d02_A Putative LACI-type tran 44.3 51 0.0018 30.7 7.5 80 160-243 5-87 (303)
244 1zq6_A Otcase, ornithine carba 43.7 1.9E+02 0.0064 28.0 11.1 138 26-193 58-226 (359)
245 3ksm_A ABC-type sugar transpor 43.5 40 0.0014 30.9 6.5 80 161-243 2-85 (276)
246 3tsm_A IGPS, indole-3-glycerol 43.4 2E+02 0.0068 26.6 10.9 87 148-244 82-171 (272)
247 2g29_A Nitrate transport prote 43.3 17 0.00056 36.6 3.9 89 461-570 32-134 (417)
248 3k4h_A Putative transcriptiona 43.2 48 0.0016 30.8 7.0 80 158-243 7-93 (292)
249 2zzv_A ABC transporter, solute 42.9 22 0.00074 34.8 4.6 63 493-558 54-118 (361)
250 3huu_A Transcription regulator 42.8 35 0.0012 32.1 6.0 86 152-243 15-107 (305)
251 3uhf_A Glutamate racemase; str 42.4 2.1E+02 0.0072 26.5 11.5 59 61-120 47-115 (274)
252 2fn9_A Ribose ABC transporter, 42.3 49 0.0017 30.7 7.0 79 160-243 3-84 (290)
253 3rot_A ABC sugar transporter, 41.0 40 0.0014 31.5 6.2 81 160-243 4-87 (297)
254 1js1_X Transcarbamylase; alpha 40.8 2.4E+02 0.0082 26.8 11.2 136 26-193 36-202 (324)
255 1jx6_A LUXP protein; protein-l 40.7 67 0.0023 30.7 7.8 82 160-242 44-128 (342)
256 2jfz_A Glutamate racemase; cel 40.7 1.9E+02 0.0064 26.4 10.5 35 86-120 57-91 (255)
257 3iwt_A 178AA long hypothetical 40.6 63 0.0022 27.6 6.8 50 175-228 41-91 (178)
258 2i6u_A Otcase, ornithine carba 40.4 2.4E+02 0.0083 26.6 13.8 135 26-193 39-179 (307)
259 3dnf_A ISPH, LYTB, 4-hydroxy-3 40.0 56 0.0019 30.6 6.5 51 69-119 187-239 (297)
260 3lr1_A Tungstate ABC transport 39.9 24 0.00082 32.1 4.0 74 488-570 18-94 (236)
261 2yxb_A Coenzyme B12-dependent 39.6 1.7E+02 0.0057 24.5 10.4 85 160-253 19-107 (161)
262 3kke_A LACI family transcripti 39.3 48 0.0016 31.1 6.4 84 154-243 10-95 (303)
263 2fvy_A D-galactose-binding per 39.2 84 0.0029 29.2 8.2 79 160-243 3-85 (309)
264 3gyb_A Transcriptional regulat 38.6 82 0.0028 28.8 7.9 118 27-156 119-244 (280)
265 1ta9_A Glycerol dehydrogenase; 38.1 43 0.0015 33.9 5.9 96 149-254 81-178 (450)
266 2h3h_A Sugar ABC transporter, 38.0 67 0.0023 30.2 7.3 79 161-243 3-83 (313)
267 4f2g_A Otcase 1, ornithine car 37.4 1.5E+02 0.0053 28.0 9.3 131 27-193 46-184 (309)
268 3pzy_A MOG; ssgcid, seattle st 37.1 80 0.0028 26.7 6.7 64 160-228 8-76 (164)
269 2fep_A Catabolite control prot 36.5 67 0.0023 29.8 6.9 78 160-243 17-96 (289)
270 3kbq_A Protein TA0487; structu 36.3 83 0.0028 26.9 6.6 61 161-226 5-70 (172)
271 1oj7_A Hypothetical oxidoreduc 36.1 43 0.0015 33.4 5.6 83 150-238 43-128 (408)
272 3sr0_A Adenylate kinase; phosp 36.1 18 0.0006 32.2 2.4 31 92-122 2-32 (206)
273 3jv9_A OXYR, transcriptional r 36.0 76 0.0026 27.3 6.9 81 462-569 4-85 (219)
274 3dmy_A Protein FDRA; predicted 35.9 3.6E+02 0.012 27.3 13.9 145 76-242 45-198 (480)
275 3eye_A PTS system N-acetylgala 35.3 53 0.0018 27.9 5.1 80 146-236 19-99 (168)
276 3cvg_A Putative metal binding 35.2 28 0.00095 32.8 3.9 73 489-570 33-115 (294)
277 1y80_A Predicted cobalamin bin 35.0 1.3E+02 0.0045 26.4 8.2 85 160-252 89-177 (210)
278 2hxr_A HTH-type transcriptiona 35.0 1E+02 0.0035 27.1 7.7 83 461-569 29-111 (238)
279 3kjx_A Transcriptional regulat 34.9 1.5E+02 0.0052 28.1 9.4 78 160-243 69-148 (344)
280 1us5_A Putative GLUR0 ligand b 34.9 77 0.0026 29.7 7.1 70 493-570 38-121 (314)
281 3lfj_A Manxb, phosphotransfera 34.9 45 0.0016 28.9 4.7 81 146-236 35-115 (187)
282 4amu_A Ornithine carbamoyltran 34.6 2.3E+02 0.0078 27.5 10.1 133 26-193 71-211 (365)
283 3umf_A Adenylate kinase; rossm 34.5 15 0.00052 33.0 1.8 31 91-121 30-60 (217)
284 4ekn_B Aspartate carbamoyltran 34.4 1.9E+02 0.0064 27.3 9.4 135 26-193 40-184 (306)
285 1ble_A Fructose permease; phos 34.0 49 0.0017 28.0 4.7 79 147-235 16-94 (163)
286 3h5o_A Transcriptional regulat 34.0 1.1E+02 0.0037 29.1 8.1 84 154-243 57-142 (339)
287 3e61_A Putative transcriptiona 33.9 62 0.0021 29.6 6.2 76 160-243 9-87 (277)
288 1ml4_A Aspartate transcarbamoy 33.9 3E+02 0.01 25.9 10.7 134 27-193 45-187 (308)
289 3muq_A Uncharacterized conserv 33.7 36 0.0012 31.0 4.1 74 488-570 18-94 (237)
290 3out_A Glutamate racemase; str 33.3 1.2E+02 0.0042 27.9 7.9 59 61-120 30-99 (268)
291 1ixc_A CBNR, LYSR-type regulat 33.2 99 0.0034 28.4 7.5 83 461-569 90-172 (294)
292 3lte_A Response regulator; str 33.0 1.6E+02 0.0054 22.8 7.8 57 175-242 18-76 (132)
293 2fyi_A HTH-type transcriptiona 32.9 1.4E+02 0.0049 25.9 8.3 84 461-569 13-96 (228)
294 4es6_A Uroporphyrinogen-III sy 32.9 33 0.0011 31.5 3.9 85 146-239 115-205 (254)
295 2f5x_A BUGD; periplasmic bindi 32.8 63 0.0021 30.8 5.9 99 462-579 17-130 (312)
296 1jlj_A Gephyrin; globular alph 32.1 1.4E+02 0.0047 25.9 7.6 68 157-228 12-88 (189)
297 2iks_A DNA-binding transcripti 31.9 52 0.0018 30.6 5.2 84 154-242 15-100 (293)
298 3gv0_A Transcriptional regulat 31.4 87 0.003 28.9 6.8 80 158-243 7-90 (288)
299 3ezx_A MMCP 1, monomethylamine 31.1 2.7E+02 0.0092 24.6 9.5 86 160-253 93-184 (215)
300 1jye_A Lactose operon represso 31.0 1.2E+02 0.0043 28.9 8.0 65 158-226 60-126 (349)
301 3onm_A Transcriptional regulat 30.8 1.1E+02 0.0037 27.0 7.1 82 461-570 26-107 (238)
302 4ecf_A ABC-type phosphate tran 30.8 82 0.0028 29.0 6.3 71 490-570 17-91 (264)
303 2qv7_A Diacylglycerol kinase D 30.8 2.1E+02 0.0074 27.2 9.6 74 160-240 25-102 (337)
304 2dri_A D-ribose-binding protei 30.6 1.3E+02 0.0044 27.4 7.7 79 160-243 2-83 (271)
305 1sg6_A Pentafunctional AROM po 30.6 1.6E+02 0.0056 28.9 8.8 97 153-254 30-140 (393)
306 2ioy_A Periplasmic sugar-bindi 30.5 1.2E+02 0.004 27.9 7.5 79 160-243 2-83 (283)
307 3fzv_A Probable transcriptiona 30.5 1.1E+02 0.0037 28.3 7.3 84 461-570 94-178 (306)
308 3d8u_A PURR transcriptional re 30.5 86 0.0029 28.6 6.5 78 160-243 4-83 (275)
309 3qja_A IGPS, indole-3-glycerol 30.4 1.6E+02 0.0053 27.3 8.0 87 148-244 75-164 (272)
310 3egc_A Putative ribose operon 30.1 41 0.0014 31.2 4.2 79 158-242 7-87 (291)
311 3hcw_A Maltose operon transcri 29.9 74 0.0025 29.6 6.0 78 160-243 8-92 (295)
312 2x7x_A Sensor protein; transfe 29.4 1.8E+02 0.0061 27.4 8.7 80 159-243 6-88 (325)
313 3zy2_A Putative GDP-fucose pro 29.4 2.5E+02 0.0084 27.0 9.0 88 140-242 261-348 (362)
314 2dvz_A BUGE, putative exported 29.3 50 0.0017 31.5 4.5 82 490-579 36-134 (314)
315 1uuy_A CNX1, molybdopterin bio 29.2 2.2E+02 0.0076 23.8 8.3 75 160-238 6-96 (167)
316 2rjo_A Twin-arginine transloca 28.9 79 0.0027 30.0 6.1 79 160-243 6-89 (332)
317 3qk7_A Transcriptional regulat 28.6 95 0.0032 28.8 6.5 77 160-243 7-89 (294)
318 3hs3_A Ribose operon repressor 28.2 1.2E+02 0.0041 27.8 7.0 68 154-226 5-75 (277)
319 3fni_A Putative diflavin flavo 28.0 2.6E+02 0.0088 23.1 9.5 76 160-245 5-87 (159)
320 2vk2_A YTFQ, ABC transporter p 27.6 96 0.0033 28.9 6.3 79 160-243 3-84 (306)
321 4ab5_A Transcriptional regulat 27.4 69 0.0023 27.7 5.0 84 461-570 7-90 (222)
322 2rgy_A Transcriptional regulat 27.4 96 0.0033 28.6 6.2 79 159-243 8-91 (290)
323 3e3m_A Transcriptional regulat 27.1 1.7E+02 0.0059 27.9 8.3 84 154-243 65-150 (355)
324 4exl_A PBP 1, phosphate-bindin 26.9 1.4E+02 0.0047 27.4 7.1 69 492-570 19-91 (265)
325 2csu_A 457AA long hypothetical 26.9 2.2E+02 0.0074 28.7 9.0 145 75-242 72-227 (457)
326 3okf_A 3-dehydroquinate syntha 26.9 1.9E+02 0.0063 28.5 8.2 97 153-254 56-158 (390)
327 3lhk_A Putative DNA binding pr 26.1 98 0.0033 25.7 5.3 73 492-568 24-101 (154)
328 2pbq_A Molybdenum cofactor bio 26.1 1.9E+02 0.0066 24.6 7.4 63 161-228 7-78 (178)
329 2qh8_A Uncharacterized protein 26.1 2.4E+02 0.0083 26.0 8.9 115 25-156 139-256 (302)
330 3guv_A Site-specific recombina 26.1 2.8E+02 0.0097 23.0 9.6 39 204-242 59-105 (167)
331 3p3v_A PTS system, N-acetylgal 25.9 75 0.0026 26.9 4.5 79 146-236 18-96 (163)
332 3rf7_A Iron-containing alcohol 25.6 1.4E+02 0.005 29.1 7.2 82 149-236 40-129 (375)
333 2pfy_A Putative exported prote 25.6 93 0.0032 29.3 5.7 63 493-558 22-85 (301)
334 3iv7_A Alcohol dehydrogenase I 25.4 56 0.0019 31.9 4.2 80 148-235 26-107 (364)
335 3bbl_A Regulatory protein of L 25.1 1E+02 0.0034 28.5 5.9 78 160-243 5-88 (287)
336 4esw_A Pyrimidine biosynthesis 24.9 1.3E+02 0.0043 28.8 6.7 76 487-570 21-100 (342)
337 3csu_A Protein (aspartate carb 24.9 4.4E+02 0.015 24.8 11.8 134 27-193 42-187 (310)
338 3lua_A Response regulator rece 24.8 2.5E+02 0.0085 21.9 9.3 55 175-240 16-75 (140)
339 3kn3_A Putative periplasmic pr 24.8 71 0.0024 29.1 4.4 74 488-570 18-94 (242)
340 1di6_A MOGA, molybdenum cofact 24.6 2E+02 0.0069 25.0 7.2 64 161-228 5-76 (195)
341 2pfz_A Putative exported prote 24.4 79 0.0027 29.8 5.0 63 493-558 21-84 (301)
342 3miz_A Putative transcriptiona 24.2 1.9E+02 0.0066 26.6 7.8 71 153-228 7-80 (301)
343 2rb4_A ATP-dependent RNA helic 24.1 3E+02 0.01 22.9 8.3 78 137-223 12-89 (175)
344 3lvu_A ABC transporter, peripl 24.1 1.2E+02 0.0041 27.5 6.2 43 492-543 145-187 (258)
345 3i42_A Response regulator rece 24.0 2.4E+02 0.0082 21.5 10.3 69 175-254 15-85 (127)
346 2qr3_A Two-component system re 24.0 2.5E+02 0.0087 21.7 9.6 57 174-241 14-77 (140)
347 2lci_A Protein OR36; structura 23.8 1.9E+02 0.0067 21.2 5.6 45 143-190 60-104 (134)
348 1pg5_A Aspartate carbamoyltran 23.8 3.6E+02 0.012 25.3 9.2 134 27-193 39-182 (299)
349 2fp4_A Succinyl-COA ligase [GD 23.5 4.6E+02 0.016 24.5 13.3 145 75-240 79-234 (305)
350 3c3k_A Alanine racemase; struc 23.4 1.9E+02 0.0066 26.4 7.6 77 159-242 8-86 (285)
351 2qpq_A Protein BUG27; alpha/be 23.4 1E+02 0.0034 29.1 5.5 83 489-579 24-121 (301)
352 2i2x_B MTAC, methyltransferase 23.1 4.2E+02 0.014 24.0 9.6 83 160-253 124-211 (258)
353 3hdg_A Uncharacterized protein 22.9 2.7E+02 0.0091 21.6 8.2 57 175-242 19-77 (137)
354 2hzl_A Trap-T family sorbitol/ 22.7 72 0.0025 31.1 4.5 62 493-557 53-116 (365)
355 3l4e_A Uncharacterized peptida 22.5 1.4E+02 0.0049 26.2 6.0 84 148-242 16-101 (206)
356 3kht_A Response regulator; PSI 22.5 2.8E+02 0.0096 21.7 10.7 58 175-241 17-76 (144)
357 1pq4_A Periplasmic binding pro 22.3 1.5E+02 0.005 27.8 6.3 52 164-225 193-244 (291)
358 3s40_A Diacylglycerol kinase; 22.2 3.4E+02 0.012 25.3 9.0 74 159-240 8-85 (304)
359 3bil_A Probable LACI-family tr 22.1 1.3E+02 0.0043 28.9 6.1 78 160-243 67-146 (348)
360 4a29_A Engineered retro-aldol 22.1 4E+02 0.014 24.3 8.8 85 150-245 69-156 (258)
361 3clk_A Transcription regulator 22.0 82 0.0028 29.1 4.6 78 160-242 9-88 (290)
362 2o20_A Catabolite control prot 21.5 2.3E+02 0.0079 26.6 7.9 80 158-243 62-143 (332)
363 1fuk_A Eukaryotic initiation f 21.3 3.3E+02 0.011 22.3 8.0 75 141-224 12-86 (165)
364 2qip_A Protein of unknown func 21.2 3.6E+02 0.012 22.4 8.5 94 148-242 36-133 (165)
365 3gl9_A Response regulator; bet 21.1 2.7E+02 0.0094 21.1 9.8 56 175-241 14-71 (122)
366 4gd5_A Phosphate ABC transport 21.1 1.3E+02 0.0045 27.7 5.8 49 522-570 74-122 (279)
367 3grc_A Sensor protein, kinase; 20.9 3E+02 0.01 21.4 9.4 55 175-240 18-74 (140)
368 2kv5_A FST, putative uncharact 20.9 1.4E+02 0.0046 17.5 3.5 22 590-611 7-28 (33)
369 1vc4_A Indole-3-glycerol phosp 20.9 4.6E+02 0.016 23.8 9.3 87 148-244 68-156 (254)
370 2j48_A Two-component sensor ki 20.9 2.6E+02 0.0087 20.6 7.1 57 175-242 13-71 (119)
371 1dbq_A Purine repressor; trans 20.9 2E+02 0.0068 26.2 7.1 64 160-228 8-73 (289)
372 1ixh_A Phosphate-binding prote 20.8 75 0.0026 30.3 4.1 69 493-570 18-87 (321)
373 2h9b_A HTH-type transcriptiona 20.6 2.1E+02 0.0071 26.5 7.2 69 489-569 103-171 (312)
374 3szu_A ISPH, 4-hydroxy-3-methy 20.4 1.1E+02 0.0038 29.1 4.9 49 71-119 205-255 (328)
375 1gud_A ALBP, D-allose-binding 20.4 2E+02 0.0068 26.3 7.0 81 160-243 2-85 (288)
376 2hsg_A Glucose-resistance amyl 20.3 1.3E+02 0.0044 28.5 5.7 77 160-242 61-139 (332)
377 3bvp_A INT, TP901-1 integrase; 20.1 2.5E+02 0.0086 22.4 6.7 22 144-165 24-45 (138)
378 3qbe_A 3-dehydroquinate syntha 20.1 2.5E+02 0.0085 27.3 7.6 97 150-254 36-138 (368)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=5.4e-71 Score=628.29 Aligned_cols=524 Identities=19% Similarity=0.326 Sum_probs=434.6
Q ss_pred ceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEcCCChHH
Q 006916 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQSAVM 103 (625)
Q Consensus 25 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~-~~~~a~~~~~~l~~~~v~aviG~~~s~~ 103 (625)
++|+||+++|++.. ..+.|+++|+|+||+++ ++|++++.|+++ ++..+++++|++++++|.|||||.+|..
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CcceEEEEeCCCCh---HHHHHHHHHHHHHhcCC-----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence 47999999999854 78999999999999986 899999999999 9999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHH
Q 006916 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (625)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l 183 (625)
+.+++++++.+++|+|++ +.+.. ..++|+||+.|+ ++.++++++++|||+||++|+ |+++|....+.+.+.+
T Consensus 73 ~~a~~~i~~~~~iP~is~--~~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~ 144 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITP--SFPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (823)
T ss_dssp HHHHHHHHHHTTCEEEEC--SCCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCceeec--ccCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHh
Confidence 999999999999999997 33322 357899999998 889999999999999999999 7789999999999999
Q ss_pred hccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhcccCC
Q 006916 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 263 (625)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 263 (625)
++.|+||+..+.++........|+..++++|+++++++||+++..+.+..++++|+++||..++|+|+.++......+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~- 223 (823)
T 3kg2_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (823)
T ss_dssp HHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-
T ss_pred hccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-
Confidence 9999999998877654222367888999999999999999999999999999999999999999999999854333222
Q ss_pred CCCChhhhhcccceEEEeeeCCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcCCcccc
Q 006916 264 SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 337 (625)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~ 337 (625)
........|++++.++.++.+.+++|.++|+++++.. ..++.+++++||||+++|+|++++..++.+...
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~ 299 (823)
T 3kg2_A 224 ----LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (823)
T ss_dssp ----SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ----HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 1223445668889888889999999999999887632 135667999999999999999999875433211
Q ss_pred cCCCccCCCCCCccccCcc--cccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeCceeEEEeEeeCCC
Q 006916 338 SNDTKLNGLGGGTLNLGAL--SIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415 (625)
Q Consensus 338 ~~~~~~~~~~~~~~~c~~~--~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~vG~w~~~~ 415 (625)
......|... ..|.++.+|.++|++++|+|++|++.||++|++....|+|+++++++. ++||.|++..
T Consensus 300 ---------~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~-~~vg~w~~~~ 369 (823)
T 3kg2_A 300 ---------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP-RKIGYWSEVD 369 (823)
T ss_dssp ---------SSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCE-EEEEEEETTT
T ss_pred ---------CCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCC-eeEEEEcCCC
Confidence 1122356544 457789999999999999999999999999999889999999998888 8999999877
Q ss_pred CCcccCcccccCCCCCCCCCCCccceeEeCCCCCCCCcceecCCCCceEEEEecCCCCccccEEee------CCcceeee
Q 006916 416 GLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKV------NGTDIVHG 489 (625)
Q Consensus 416 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~W~~~~~~~P~~~~~~~~~~~l~v~~~~~~~~~~~~~~~------~~~~~~~G 489 (625)
++....+ .. ....+++|+|++...+| |.+.. +++++++|
T Consensus 370 g~~~~~~------------------------------~~--~~~~~~~l~v~~~~~~P---~~~~~~~~~~~~~~~~~~G 414 (823)
T 3kg2_A 370 KMVLTED------------------------------DT--SGLEQKTVVVTTILESP---YVMMKANHAALAGNERYEG 414 (823)
T ss_dssp EEEECCC------------------------------CC--SSCCCCCEEEEECCCTT---TSEECTTGGGCCGGGGEES
T ss_pred CceeccC------------------------------cc--cccCCCEEEEEEecCCC---cEEEecCccccCCCCceEE
Confidence 5432100 00 02357899999976555 44431 25678999
Q ss_pred eeHHHHHHHHHHCCCCccEEEEeCCCCC------CCCCHHHHHHHHHcCcccEEEeeeeeecccccceEecccccccceE
Q 006916 490 YCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLV 563 (625)
Q Consensus 490 ~~idl~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~g~~~~l~~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~ 563 (625)
||+||++++++++||+ ++++...+++ .||+|++++++|.+|++|++++++++|++|++.+|||.||+.++++
T Consensus 415 ~~~dl~~~~a~~l~~~--~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~ 492 (823)
T 3kg2_A 415 YCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS 492 (823)
T ss_dssp HHHHHHHHHHHHHTCC--EEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEE
T ss_pred EHHHHHHHHHHHcCCc--EEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEE
Confidence 9999999999999999 6666544322 6788999999999999999999999999999999999999999999
Q ss_pred EEEecCC-CCcCcchhccCccHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCc
Q 006916 564 VVAPVRK-LNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPP 616 (625)
Q Consensus 564 ~l~~~~~-~~~~~~~~l~pf~~~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (625)
+++|++. ..++++.|++||++.+|++++++++++++++|+++|++|.+|+.+.
T Consensus 493 ~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~ 546 (823)
T 3kg2_A 493 IMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEE 546 (823)
T ss_dssp EEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------
T ss_pred EEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcc
Confidence 9999887 4567899999999999999999999999999999999888886543
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=8.9e-53 Score=434.63 Aligned_cols=369 Identities=17% Similarity=0.257 Sum_probs=313.7
Q ss_pred CCceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCC-CCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEcCCC
Q 006916 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRV-LGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQS 100 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~i-L~g~~l~~~~~D~~~-~~~~a~~~~~~l~~~~v~aviG~~~ 100 (625)
.+++|+||+++|++.. ..+.|+++|+|+||+++++ |+|++|+++++|++| ++..+++.+|++++++|.+||||.+
T Consensus 2 ~~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~ 78 (389)
T 3o21_A 2 FPNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYD 78 (389)
T ss_dssp CCSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCC
T ss_pred CCceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCC
Confidence 3689999999999854 7899999999999999999 799999999999987 9999999999999999999999999
Q ss_pred hHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHH
Q 006916 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALG 180 (625)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~ 180 (625)
|..+.+++++++.++||+|+++. +.++ ..+|.||+.|+ ++.++++++++|||+||++|| |++||....+.+.
T Consensus 79 S~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~ 150 (389)
T 3o21_A 79 QMSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred hhHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHH
Confidence 99999999999999999998743 4333 34556677776 899999999999999999999 8899999999999
Q ss_pred HHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhcc
Q 006916 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (625)
Q Consensus 181 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (625)
+.+++.|+||+..+.++.. ...|+..++++|+++++++||+++..+.+..++++++++||..++|+||+++.+....
T Consensus 151 ~~~~~~g~~v~~~~~~~~~---~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~ 227 (389)
T 3o21_A 151 EAAVQNNWQVTARSVGNIK---DVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDI 227 (389)
T ss_dssp HHHHHTTCEEEEEECTTCC---CTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGC
T ss_pred HHhhcCCCeEEEEEecCCC---CcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCcccc
Confidence 9999999999988766532 2568999999999999999999999999999999999999999999999988654433
Q ss_pred cCCCCCChhhhhcccceEEEeeeCCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcCCc
Q 006916 261 DSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (625)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDAv~~la~Al~~~~~~~~~ 334 (625)
+. ........|++++....++.|.+++|.++|+++++.. ..+..+++++||||+++|+|++++..++..
T Consensus 228 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~ 302 (389)
T 3o21_A 228 LL-----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVD 302 (389)
T ss_dssp CC-----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cH-----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 32 2334456788888888888999999999999887632 134677999999999999999999865432
Q ss_pred ccccCCCccCCCCCCcccc--CcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeCceeEEEeEee
Q 006916 335 ISFSNDTKLNGLGGGTLNL--GALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWS 412 (625)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c--~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~vG~w~ 412 (625)
.... .....| ....+|.++.+|.++|++++|+|++|++.||++|+|....|+|+++.+++. ++||+|+
T Consensus 303 ~~~~---------~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~-~~VG~w~ 372 (389)
T 3o21_A 303 VSRR---------GSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGS-RKAGYWN 372 (389)
T ss_dssp CC--------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEE-EEEEEEE
T ss_pred cccC---------CCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCc-eeeeEEc
Confidence 1110 112245 334568889999999999999999999999999999889999999998887 9999999
Q ss_pred CCCCCccc
Q 006916 413 NYSGLSVV 420 (625)
Q Consensus 413 ~~~~l~~~ 420 (625)
+..|++..
T Consensus 373 ~~~g~~~~ 380 (389)
T 3o21_A 373 EYERFVPF 380 (389)
T ss_dssp TTTEEECC
T ss_pred CCCCcccc
Confidence 99887543
No 3
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=1.3e-52 Score=445.70 Aligned_cols=391 Identities=20% Similarity=0.319 Sum_probs=314.2
Q ss_pred CCCceEEEEEEeecCCC-----------------CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHH
Q 006916 22 LKPEVLNVGAIFSFGTV-----------------NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGA 84 (625)
Q Consensus 22 ~~~~~i~IG~l~~~~~~-----------------~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~ 84 (625)
..++||.||++||.|.. .|.+...|+.+||||||+++++|||++|+++++|+|+++..|++.+
T Consensus 13 ~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a 92 (496)
T 3ks9_A 13 RMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQS 92 (496)
T ss_dssp EECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHH
T ss_pred ecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHH
Confidence 57899999999998631 3567789999999999999999999999999999999999999999
Q ss_pred HHHH-----------------------------hcCcEEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCC-CCCC
Q 006916 85 LQFM-----------------------------ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYP 134 (625)
Q Consensus 85 ~~l~-----------------------------~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~ 134 (625)
.+++ +++|+|||||.+|..+.+++++++.+++|+|+++++++.+++ .+||
T Consensus 93 ~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p 172 (496)
T 3ks9_A 93 IEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYK 172 (496)
T ss_dssp HHHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCT
T ss_pred HHHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCC
Confidence 9987 348999999999999999999999999999999999999999 5799
Q ss_pred ceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHH
Q 006916 135 FFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV 214 (625)
Q Consensus 135 ~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i 214 (625)
|+||+.|++..++.+++++++||||+||++|++|++||+...+.+++++++.|+||++.+.++.. ....++..++++|
T Consensus 173 ~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~i 250 (496)
T 3ks9_A 173 YFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSN--AGEKSFDRLLRKL 250 (496)
T ss_dssp TEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCHHHHHHHHHHH
T ss_pred ceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCC--CCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888754 4578999999999
Q ss_pred hcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhcccCCCCCChhhhhcccceEEEeeeCCCChhHHH
Q 006916 215 RMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRD 292 (625)
Q Consensus 215 ~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 292 (625)
+++ +++||++++....+..+++++.+.|+.. .+.||.++.|....... ......++|++++.++.++.+++++
T Consensus 251 ~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k~~~i~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~ 325 (496)
T 3ks9_A 251 RERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEVI----EGYEVEANGGITIKLQSPEVRSFDD 325 (496)
T ss_dssp HTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHHH----TTCHHHHTTCEEEEECCCCCHHHHH
T ss_pred HhccCceEEEEEecChHHHHHHHHHHHHhCCCC-cEEEEEechhccccccc----cccccccCceEEEeccCCcCcchHh
Confidence 984 8899999999999999999999999863 36899988775432111 1123568899999999999999999
Q ss_pred HHHH---------------HHhhcCCCCC------------------------CCchhhhHhHHHHHHHHHHHHHHhcCC
Q 006916 293 FVSR---------------WNTLSNGSIG------------------------LNPYGLYAYDTVWMIARALKLFLDQGN 333 (625)
Q Consensus 293 f~~~---------------~~~~~~~~~~------------------------~~~~~~~~YDAv~~la~Al~~~~~~~~ 333 (625)
|++. |+..|++... .......+|+|||++|+|||+++.+.+
T Consensus 326 fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~ 405 (496)
T 3ks9_A 326 YFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALC 405 (496)
T ss_dssp HHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence 8743 6665543110 011234699999999999999986422
Q ss_pred cccccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceee-EEEccCCCccCCcEEEEEEee----CceeEEE
Q 006916 334 TISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGP-IHFNQDRSLLHPSYDIINVIE----HGYPQQI 408 (625)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~-v~Fd~~G~r~~~~~~I~~~~~----~~~~~~v 408 (625)
.. ....|.....+ .+++|.++|++++|.+.+|+ |.||++|+. ...|+|+||+. ...+++|
T Consensus 406 ~~-------------~~~~c~~~~~~-~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~~~V 470 (496)
T 3ks9_A 406 PG-------------HVGLCDAMKPI-DGSKLLDFLIKSSFIGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHV 470 (496)
T ss_dssp TT-------------CSSCCGGGSSC-CHHHHHHHHHTCEEECTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEEEEE
T ss_pred CC-------------CCCCCcCCCCC-CHHHHHHHHHhcCCcCCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEEEEE
Confidence 11 11245544445 48999999999999999995 999999995 68999999973 3446999
Q ss_pred eEeeCCCCCcccCcccccCCCCCCCCCCCccceeEeCCCCCCCCcc
Q 006916 409 GYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRG 454 (625)
Q Consensus 409 G~w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~W~~~~~~~P~~ 454 (625)
|.|+.. .|.+ +.+.| |.++.+++|++
T Consensus 471 G~~~~~-~l~i------------------~~~~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 471 GTWHEG-VLNI------------------DDYKI-QMNKSGLVPRG 496 (496)
T ss_dssp EEEETT-EEEE------------------CTTTC------------
T ss_pred EEEeCC-eEEE------------------ehhhc-ccCCCCCCCCC
Confidence 999742 2322 22356 88777778764
No 4
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=6.1e-52 Score=430.26 Aligned_cols=371 Identities=15% Similarity=0.213 Sum_probs=316.1
Q ss_pred CCceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCC-CCcEEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEcCCC
Q 006916 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVL-GGRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQS 100 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL-~g~~l~~~~~D~~-~~~~~a~~~~~~l~~~~v~aviG~~~ 100 (625)
.|++|+||++||.+. .+...|+++|||+||+++++| ++++|.+...+++ +++..+++.+|++++++|.|||||.+
T Consensus 2 ~P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~ 78 (389)
T 4gpa_A 2 FPSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYD 78 (389)
T ss_dssp CCSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCeEEEEEEEcCCC---hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCc
Confidence 578999999999874 578899999999999999998 6778888777655 58889999999999999999999999
Q ss_pred hHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHH
Q 006916 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALG 180 (625)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~ 180 (625)
|..+.+++++++.++||+++++++.+.. .+|++++|+.+ ++++++++++|||+||++||+++.++ ...+.+.
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~~~~~~~~-----~~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~~ 150 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFPTEGE--SQFVLQLRPSL-----RGALLSLLDHYEWNCFVFLYDTDRGY-SILQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSEEECSCCC-----HHHHHHHHHHTTCCEEEEEECSTTCS-HHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCceecccccccc--ccCCccccCCH-----HHHHHHHHHHcCCcEEEEEEecchhh-HHHHHHH
Confidence 9999999999999999999976554322 45676666543 46899999999999999999776654 5678888
Q ss_pred HHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhcc
Q 006916 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (625)
Q Consensus 181 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (625)
+.+.+.|+||...+.++.. ..++...+++++++++++||+.+..+.+..++++|+++||+.++++|+.++.+....
T Consensus 151 ~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 226 (389)
T 4gpa_A 151 EKAGQNGWHVSAICVENFN----DVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDI 226 (389)
T ss_dssp HHHHTTTCEEEEEECTTCC----HHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGS
T ss_pred HHHHhcCceEEEEeecCCc----chhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccch
Confidence 9999999999988776654 889999999999999999999999999999999999999999999999998776544
Q ss_pred cCCCCCChhhhhcccceEEEeeeCCCChhHHHHHHHHHhhcCC-----CCCCCchhhhHhHHHHHHHHHHHHHHhcCCcc
Q 006916 261 DSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG-----SIGLNPYGLYAYDTVWMIARALKLFLDQGNTI 335 (625)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~ 335 (625)
.. ........|+.++....+..+.+++|.++|++.+.. ...+..+++++||||+++|+||+++.++....
T Consensus 227 ~~-----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~ 301 (389)
T 4gpa_A 227 SL-----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDI 301 (389)
T ss_dssp CC-----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hh-----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 33 445566778999999999999999999999987652 24567789999999999999999998876542
Q ss_pred cccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeCceeEEEeEeeCCC
Q 006916 336 SFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415 (625)
Q Consensus 336 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~vG~w~~~~ 415 (625)
... .....+.|....+|.+|..|.++|++++|+|++|+|.||++|+|.+..|+|+|++++++ ++||.|++..
T Consensus 302 ~~~-------~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~-~~VG~W~~~~ 373 (389)
T 4gpa_A 302 SRR-------GNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGP-RKVGYWNDMD 373 (389)
T ss_dssp CCT-------TCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEE-EEEEEEETTT
T ss_pred ccc-------CCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEE-EEEEEEECCC
Confidence 211 12344566677789899999999999999999999999999999889999999998887 9999999998
Q ss_pred CCcccC
Q 006916 416 GLSVVP 421 (625)
Q Consensus 416 ~l~~~~ 421 (625)
||.+..
T Consensus 374 gl~~~~ 379 (389)
T 4gpa_A 374 KLVLIQ 379 (389)
T ss_dssp EEEECC
T ss_pred CeEECC
Confidence 876654
No 5
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=1.3e-52 Score=443.63 Aligned_cols=367 Identities=20% Similarity=0.316 Sum_probs=308.9
Q ss_pred CCCceEEEEEEeecC------------C-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH
Q 006916 22 LKPEVLNVGAIFSFG------------T-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM 88 (625)
Q Consensus 22 ~~~~~i~IG~l~~~~------------~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~ 88 (625)
..+++|.||++||+| . ..|.+...|+++|+||||+++++|||++|+++++|+|+++..|++++.+++
T Consensus 9 ~~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll 88 (479)
T 3sm9_A 9 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFV 88 (479)
T ss_dssp EECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHH
Confidence 467999999999996 1 157888999999999999999999999999999999999999999999998
Q ss_pred hc-------------------------CcEEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCC-CCCCceEEccCc
Q 006916 89 ET-------------------------DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPN 142 (625)
Q Consensus 89 ~~-------------------------~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps 142 (625)
++ +|+|||||.+|..+.+++++++.+++|+|+++++++.+++ .+||||||+.|+
T Consensus 89 ~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~ps 168 (479)
T 3sm9_A 89 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 168 (479)
T ss_dssp HTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCC
T ss_pred hCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCc
Confidence 74 5999999999999999999999999999999999999999 579999999999
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHH-HHHhcCCceE
Q 006916 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNEL-VKVRMMEARV 221 (625)
Q Consensus 143 ~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l-~~i~~~~~~v 221 (625)
+..++.+++++++||||+||++|++|++||+...+.|++++++.|+||++.+.++.. ....++...+ +.+++++++|
T Consensus 169 d~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~~i~~s~a~v 246 (479)
T 3sm9_A 169 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRS--NIRKSYDSVIRELLQKPNARV 246 (479)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC----CHHHHHHHHHHHHTCTTCCE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCC--CChHHHHHHHHHHHhcCCCeE
Confidence 999999999999999999999999999999999999999999999999999988864 3467888888 7788899999
Q ss_pred EEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhcccCCCCCChhhhhcccceEEEeeeCCCChhHHHHHHH-----
Q 006916 222 IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR----- 296 (625)
Q Consensus 222 Ivl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~----- 296 (625)
||+++...++..+++++.++|+. ++||.++.|........ .....++|++++.++..+.|++++|++.
T Consensus 247 Ii~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~----~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~ 319 (479)
T 3sm9_A 247 VVLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK----GSEHVAYGAITLELASQPVRQFDRYFQSLNPYN 319 (479)
T ss_dssp EEEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT----TCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTT
T ss_pred EEEEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccccc----cccccCceEEEEEeccCCCcchhhHhhccCcCc
Confidence 99999999999999999999975 89999988754311110 1124678999999999999999988753
Q ss_pred ----------HHhhcCCCC---------------------CCCchhhhHhHHHHHHHHHHHHHHhcCCcccccCCCccCC
Q 006916 297 ----------WNTLSNGSI---------------------GLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNG 345 (625)
Q Consensus 297 ----------~~~~~~~~~---------------------~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~ 345 (625)
|+..|++.. ......+.+|||||++|+|||+++.+.+..
T Consensus 320 ~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~---------- 389 (479)
T 3sm9_A 320 NHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPN---------- 389 (479)
T ss_dssp CTTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTT----------
T ss_pred CCCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCC----------
Confidence 666554211 011234689999999999999998632210
Q ss_pred CCCCccccCcccccCchHHHH-HHHHhcccccc------ee-eEEEccCCCccCCcEEEEEEee---CceeEEEeEee
Q 006916 346 LGGGTLNLGALSIFDGGKKFL-ANILQTNMTGL------SG-PIHFNQDRSLLHPSYDIINVIE---HGYPQQIGYWS 412 (625)
Q Consensus 346 ~~~~~~~c~~~~~~~~~~~l~-~~l~~~~f~g~------tG-~v~Fd~~G~r~~~~~~I~~~~~---~~~~~~vG~w~ 412 (625)
....|...... ++++|. ++|++++|.+. +| +|.||++|++ ...|+|+|++. ...+++||.|+
T Consensus 390 ---~~~~c~~~~~~-~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 390 ---TTKLCDAMKIL-DGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp ---CSSCCHHHHSC-CHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES
T ss_pred ---CCcCCCCCCCc-ChHHHHHHHhcceeeccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe
Confidence 11134433333 589999 99999999998 55 6999999995 68999999973 33469999997
No 6
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=7.3e-52 Score=447.60 Aligned_cols=390 Identities=21% Similarity=0.312 Sum_probs=323.2
Q ss_pred CCCceEEEEEEeecCC-------------CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH
Q 006916 22 LKPEVLNVGAIFSFGT-------------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM 88 (625)
Q Consensus 22 ~~~~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~ 88 (625)
..+++|+||+++|++. ..|.+...|+++|+|+||+++++|||++|+++++|+++++..|++.+.+++
T Consensus 10 ~~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l 89 (555)
T 2e4u_A 10 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFV 89 (555)
T ss_dssp EECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ecCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHH
Confidence 3568999999999963 357788899999999999999999999999999999999999999998887
Q ss_pred h-------------------------cCcEEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCC-CCCCceEEccCc
Q 006916 89 E-------------------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPN 142 (625)
Q Consensus 89 ~-------------------------~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps 142 (625)
+ ++|++||||.+|..+.+++++++.+++|+|+++++++.|++ .+||||||+.|+
T Consensus 90 ~~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 90 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 169 (555)
T ss_dssp HTTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCC
T ss_pred hCcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCC
Confidence 3 47999999999999999999999999999999999999998 579999999999
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHh-cCCceE
Q 006916 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR-MMEARV 221 (625)
Q Consensus 143 ~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~-~~~~~v 221 (625)
+..++.+++++++||||+||++|++|++||....+.|++.+++.|+||++.+.++.. ....++..++++|+ +++++|
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~--~~~~~~~~~l~~i~~~s~a~v 247 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRS--NIRKSYDSVIRELLQKPNARV 247 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTT--CCHHHHHHHHHHHHTCTTCCE
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCC--CChHHHHHHHHHHhccCCCCE
Confidence 999999999999999999999999999999999999999999999999998888753 34778999999996 479999
Q ss_pred EEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhcccCCCCCChhhhhcccceEEEeeeCCCChhHHHHH-------
Q 006916 222 IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFV------- 294 (625)
Q Consensus 222 Ivl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~------- 294 (625)
||+++...++..+++++.++|+ +++||.++.|....... ......++|++++.++..+.++|++|+
T Consensus 248 Ii~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~ 320 (555)
T 2e4u_A 248 VVLFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIV----KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYN 320 (555)
T ss_dssp EEEECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGT----TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTT
T ss_pred EEEEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhh----ccchhhcceEEEEEeccCCCCcHHHHHhhCCccc
Confidence 9999999999999999999886 78999998765432221 112356789999998877777776654
Q ss_pred --------HHHHhhcCCCC---------------------CCCchhhhHhHHHHHHHHHHHHHHhcCCcccccCCCccCC
Q 006916 295 --------SRWNTLSNGSI---------------------GLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNG 345 (625)
Q Consensus 295 --------~~~~~~~~~~~---------------------~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~ 345 (625)
+.|+..|++.. .+..+++.+||||+++|+|||++..+....
T Consensus 321 ~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~---------- 390 (555)
T 2e4u_A 321 NHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQ---------- 390 (555)
T ss_dssp CTTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTT----------
T ss_pred CCCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCC----------
Confidence 34776665321 134567899999999999999997531110
Q ss_pred CCCCccccCcccccCchHHHHH-HHHhcccc------cceee-EEEccCCCccCCcEEEEEEee---CceeEEEeEeeCC
Q 006916 346 LGGGTLNLGALSIFDGGKKFLA-NILQTNMT------GLSGP-IHFNQDRSLLHPSYDIINVIE---HGYPQQIGYWSNY 414 (625)
Q Consensus 346 ~~~~~~~c~~~~~~~~~~~l~~-~l~~~~f~------g~tG~-v~Fd~~G~r~~~~~~I~~~~~---~~~~~~vG~w~~~ 414 (625)
....|...... ++++|.+ +|++++|+ |.+|+ |.||++|++ ...|+|++++. ...+++||.|++
T Consensus 391 ---~~~~~~~~~~~-~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~- 464 (555)
T 2e4u_A 391 ---TTKLCDAMKIL-DGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAE- 464 (555)
T ss_dssp ---CSSCCGGGTSC-CHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESS-
T ss_pred ---CCccccccCCC-CcccccHHhHhceeecccccccCCCCCeEEEcCCCCc-cceEEEEEEEecCCcEEEEEEEEecc-
Confidence 00123332222 5899999 99999999 99997 999999996 58899999962 224699999985
Q ss_pred CCCcccCcccccCCCCCCCCCCCccceeEeCCCCCCCCcceec
Q 006916 415 SGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVF 457 (625)
Q Consensus 415 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~W~~~~~~~P~~~~~ 457 (625)
.|. .+...|.|++ +++|.|+|.
T Consensus 465 -~l~------------------i~~~~I~W~~--~~~P~S~CS 486 (555)
T 2e4u_A 465 -TLS------------------LDVDSIHWSR--NSVPTSQCS 486 (555)
T ss_dssp -SEE------------------CCGGGCCCTT--SSCCCCCSS
T ss_pred -eEE------------------EeccccccCC--CCCcceeeC
Confidence 222 2345799987 689999985
No 7
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=7.8e-51 Score=421.88 Aligned_cols=368 Identities=19% Similarity=0.276 Sum_probs=306.6
Q ss_pred ceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCh-HHHHHHHHHHHhcCcEEEEcCCChH-
Q 006916 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNG-FLSIMGALQFMETDTLAIVGPQSAV- 102 (625)
Q Consensus 25 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~-~~a~~~~~~l~~~~v~aviG~~~s~- 102 (625)
+.|+||+++|+++..|...+.|+++|+|+||+++++|+|++|+++++|+++++ ..+...+|++++++|.+||||.+|.
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~~ 82 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPA 82 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCHH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCchh
Confidence 57999999999998999999999999999999999999999999999999975 4567889999988999999999995
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCC-CCCCce--EEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHH
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFF--VQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~--~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l 179 (625)
++.+++++++.+++|+|++++++ ++ ..||+| ||+.|++..++.+++++++++||++|++|++|++||....+.+
T Consensus 83 ~~~a~~~i~~~~~ip~is~~a~~---~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~ 159 (393)
T 3om0_A 83 SASTVSHICGEKEIPHIKVGPEE---TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV 159 (393)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCC---CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH
T ss_pred HHHHHHHHHhccCCCeEeccCCc---CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH
Confidence 45799999999999999997764 33 568998 9999999999999999999999999999999999987654444
Q ss_pred HHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhc
Q 006916 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTF 259 (625)
Q Consensus 180 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~ 259 (625)
+.+.+.|+||.... ++ . ..|+..++++|+++++++|++++...++..++++++++||..+.|+|+.+++....
T Consensus 160 -~~~~~~g~~v~~~~-~~-~----~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~ 232 (393)
T 3om0_A 160 -RGFLISKETLSVRM-LD-D----SRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPI 232 (393)
T ss_dssp -HHHHHSSSCEEEEE-CC------CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGG
T ss_pred -HhhhccCCeEEEEe-cC-C----CCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccccc
Confidence 55677899997654 43 2 45788999999999999999999999999999999999999889999998865443
Q ss_pred ccCCCCCChhhhhcccceEEEeeeCCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcCC
Q 006916 260 IDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGN 333 (625)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDAv~~la~Al~~~~~~~~ 333 (625)
.+.. .......|++++....+..+.+++|.++|+++++.. ..+..+++++||||+++++|++++.+...
T Consensus 233 ~~l~-----~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~~ 307 (393)
T 3om0_A 233 LHLD-----GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQE 307 (393)
T ss_dssp CCCT-----TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred cchh-----hhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhccc
Confidence 3321 122445678888888888899999999988887621 24567899999999999999999854321
Q ss_pred cccccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeCceeEEEeEeeC
Q 006916 334 TISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSN 413 (625)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~vG~w~~ 413 (625)
. ......|.....|.++.+|.++|++++|+|++|++.||++|++.+..|+|+++++++. ++||+|++
T Consensus 308 ~------------~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~-~~VG~w~~ 374 (393)
T 3om0_A 308 I------------GVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGH-REIGVWYS 374 (393)
T ss_dssp C------------CCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEE-EEEEEEEC
T ss_pred C------------cCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCc-eEeeeEcC
Confidence 1 1223467777788889999999999999999999999999999889999999998876 99999999
Q ss_pred CCCCccc
Q 006916 414 YSGLSVV 420 (625)
Q Consensus 414 ~~~l~~~ 420 (625)
..|+++.
T Consensus 375 ~~gl~~~ 381 (393)
T 3om0_A 375 NRTLAMN 381 (393)
T ss_dssp C------
T ss_pred CCCcccc
Confidence 8887654
No 8
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=2.6e-52 Score=442.69 Aligned_cols=371 Identities=20% Similarity=0.345 Sum_probs=282.8
Q ss_pred CCCceEEEEEEeecCC-------------CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH
Q 006916 22 LKPEVLNVGAIFSFGT-------------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM 88 (625)
Q Consensus 22 ~~~~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~ 88 (625)
..+++|+||++||++. ..|.+...|+++|+||||+++++|||++|+++++|+|+++..|++.+.+++
T Consensus 12 ~~~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll 91 (481)
T 3mq4_A 12 RIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFV 91 (481)
T ss_dssp EECCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGG
T ss_pred ccCCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHH
Confidence 4678999999999973 257788999999999999999999999999999999999999999999988
Q ss_pred h-----------------------cCcEEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCC-CCCCceEEccCchH
Q 006916 89 E-----------------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDL 144 (625)
Q Consensus 89 ~-----------------------~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~ 144 (625)
+ ++|++||||.+|..+.+++++++.+++|+|+++++++.+++ .+||||||+.|++.
T Consensus 92 ~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~ 171 (481)
T 3mq4_A 92 QALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDS 171 (481)
T ss_dssp GGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTH
T ss_pred hCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchH
Confidence 6 46999999999999999999999999999999999999999 67999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhc-cceEEEEeeecCCCCCCChhHHHHHHHHHh-cCCceEE
Q 006916 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAE-IRCKISYKSALPPDQSVTETDVRNELVKVR-MMEARVI 222 (625)
Q Consensus 145 ~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~-~~~~~vI 222 (625)
.++.+++++++||||+||++|++|++||+...+.|++.+++ .|+||++.+.++........++...+++++ +++++||
T Consensus 172 ~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vI 251 (481)
T 3mq4_A 172 FQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAV 251 (481)
T ss_dssp HHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----CE
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999999999999999998885 799999988887541111226778889988 5799999
Q ss_pred EEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhcccCCCCCChhhhhcccceEEEeeeCCCChhHHHHHHH------
Q 006916 223 VVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR------ 296 (625)
Q Consensus 223 vl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~------ 296 (625)
|+++...++..+++++.+.|+.+ +++||.++.|....... ......++|.+++.++..+.|++++|++.
T Consensus 252 i~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~ 326 (481)
T 3mq4_A 252 VIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPL----HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENN 326 (481)
T ss_dssp EECCCSSHHHHHC-----------CCCEEEC---------------------CCCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred EEEEChHHHHHHHHHHHHccCCc-ceEEEEECccccccccc----cccchhhccEEEEecCcCccccHHHHhhcCCcCcC
Confidence 99999999999999999999864 48999998776432221 12246689999999999999999998653
Q ss_pred ---------HHhhcCCCCC--------------------------CCchhhhHhHHHHHHHHHHHHHHhcCCcccccCCC
Q 006916 297 ---------WNTLSNGSIG--------------------------LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDT 341 (625)
Q Consensus 297 ---------~~~~~~~~~~--------------------------~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~ 341 (625)
|+..|++... .......+|||||++|+|||+++.+.+..
T Consensus 327 p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~------ 400 (481)
T 3mq4_A 327 RRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCAD------ 400 (481)
T ss_dssp TTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCC------
Confidence 5555542110 01334579999999999999998642211
Q ss_pred ccCCCCCCccccCcccccCchHHHHHHHHhccccccee-eEEEccCCCccCCcEEEEEEee----CceeEEEeEee
Q 006916 342 KLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSLLHPSYDIINVIE----HGYPQQIGYWS 412 (625)
Q Consensus 342 ~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG-~v~Fd~~G~r~~~~~~I~~~~~----~~~~~~vG~w~ 412 (625)
....|.....+ ++++|.++|++++|.+.+| +|.||++|++ ...|+|+||+. ...+++||.|+
T Consensus 401 -------~~~~c~~~~~~-~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 401 -------YRGVCPEMEQA-GGKKLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp ----------CCHHHHTS-CHHHHHHHHHTCEEECTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEEEEEEE
T ss_pred -------CCCCCCCCCCc-CHHHHHHHHhcceeecCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 11135444344 4899999999999999999 6999999995 68999999972 22458999998
No 9
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=7.6e-51 Score=427.79 Aligned_cols=368 Identities=18% Similarity=0.284 Sum_probs=312.1
Q ss_pred CCCceEEEEEEeecCC-----CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEE
Q 006916 22 LKPEVLNVGAIFSFGT-----VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLA 94 (625)
Q Consensus 22 ~~~~~i~IG~l~~~~~-----~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~--~v~a 94 (625)
...++|+||+++|++. ..|.....|+++|+|+||++ ++++|++|+++++|+++++..+++.+++++.+ +|.+
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~a 88 (433)
T 4f11_A 10 PSSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLM 88 (433)
T ss_dssp -CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSE
T ss_pred CCCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEE
Confidence 4567999999999985 34678899999999999999 88899999999999999999999999999974 8999
Q ss_pred EEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCC-CCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCc
Q 006916 95 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGR 173 (625)
Q Consensus 95 viG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~ 173 (625)
||||.+|..+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.+++++++++||++|++|++|++||.
T Consensus 89 viG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~ 168 (433)
T 4f11_A 89 VFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFS 168 (433)
T ss_dssp EEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHH
T ss_pred EECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhH
Confidence 999999999999999999999999999999999998 5799999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEee
Q 006916 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (625)
Q Consensus 174 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (625)
...+.|++.+++.|+||+..+.++. ++..++++|+++++++|++++...++..++++++++||...+++||.+
T Consensus 169 ~~~~~~~~~~~~~g~~v~~~~~~~~-------d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~ 241 (433)
T 4f11_A 169 EVRNDLTGVLYGEDIEISDTESFSN-------DPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIP 241 (433)
T ss_dssp HHHHHHHHHSSSSSCEEEEEEEESS-------CCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEE
T ss_pred HHHHHHHHHHHHcCceEEEEeccCc-------CHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEc
Confidence 9999999999999999999887763 466889999999999999999999999999999999999888999999
Q ss_pred Ccchhccc--------CCCCCChhhhhcccceEEEeeeCCCC--------hhHHHHHHHHHhh-cCCCCCCCchhhhHhH
Q 006916 254 TWLSTFID--------SKSPLSLKTAKSILGALTLRQHTPDS--------KRRRDFVSRWNTL-SNGSIGLNPYGLYAYD 316 (625)
Q Consensus 254 ~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~~~~YD 316 (625)
+.....+. ...+......+..+|++++.++.+.. +..++|.++|+++ ++ ..++.+++.+||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~--~~~~~~a~~~YD 319 (433)
T 4f11_A 242 GWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSG--VGPSKFHGYAYD 319 (433)
T ss_dssp SCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTT--SCCCTTHHHHHH
T ss_pred CcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCC--CCcccchhhHHH
Confidence 87433221 11112244557889999998866432 3368899999887 44 567778889999
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCccCCCCCCccccCc--ccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcE
Q 006916 317 TVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGA--LSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSY 394 (625)
Q Consensus 317 Av~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~--~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~ 394 (625)
||+++|+|++++..+.... +.+..|.. ...|.++++|.++|++++|+|++|+|.| ++|+|. ..|
T Consensus 320 Av~~la~Al~~a~~~~~~~------------~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~-~~~ 385 (433)
T 4f11_A 320 GIWVIAKTLQRAMETLHAS------------SRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM-GTI 385 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHS------------SSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-CEE
T ss_pred HHHHHHHHHHHHHHHHhcc------------CCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee-eeE
Confidence 9999999999987542110 00001111 1134468999999999999999999999 899975 899
Q ss_pred EEEEEeeCceeEEEeEeeCC
Q 006916 395 DIINVIEHGYPQQIGYWSNY 414 (625)
Q Consensus 395 ~I~~~~~~~~~~~vG~w~~~ 414 (625)
+|++++++.+ ++||.|++.
T Consensus 386 ~I~~~~~g~~-~~VG~~~~~ 404 (433)
T 4f11_A 386 KFTQFQDSRE-VKVGEYNAV 404 (433)
T ss_dssp EEEEEETTEE-EEEEEEETT
T ss_pred EEEEEECCce-EEEEEEECC
Confidence 9999987655 999999864
No 10
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=2.2e-50 Score=419.01 Aligned_cols=369 Identities=21% Similarity=0.328 Sum_probs=317.2
Q ss_pred CceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEcCCCh
Q 006916 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQSA 101 (625)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~-~~~~~a~~~~~~l~~~~v~aviG~~~s 101 (625)
+++|+||+++|++ ...|...+.|+++|+|+||+++++|+|++|++++.|+. .|+..+...+|++++++|.+||||.+|
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S 81 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS 81 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCCh
Confidence 5789999999996 35688899999999999999999999999999998876 588889999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHH
Q 006916 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD 181 (625)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~ 181 (625)
..+.+++++++.+++|+|+++++++.+++. .+|+||+.|++..++.+++++++++||+||++|+ |++||....+.+++
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~~~~l~~~-~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~ 159 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWKHQVSDNK-DSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIK 159 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCCCCCTTCC-CCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHT
T ss_pred hHHHHHHHHHhcCCCCeEeeccCccccccc-CceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHH
Confidence 999999999999999999999999988764 5789999999999999999999999999999998 67899999999999
Q ss_pred HHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhccc
Q 006916 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261 (625)
Q Consensus 182 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 261 (625)
.+++.|+||+... ++.. ..|+..++++|+++++++|++++...++..++++++++||..+.|+|++++......+
T Consensus 160 ~~~~~g~~v~~~~-~~~~----~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~ 234 (395)
T 3h6g_A 160 APSRYNLRLKIRQ-LPAD----TKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALD 234 (395)
T ss_dssp GGGTSSCEEEEEE-CCSS----GGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBC
T ss_pred hhhcCCceEEEEE-eCCC----chhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEec
Confidence 9999999999865 7654 7789999999999999999999999999999999999999999999999875433222
Q ss_pred CCCCCChhhhhcccceEEEeeeCCCChhHHHHHHHHHhhcCCCC----------CCCchhhhHhHHHHHHHHHHHHHHhc
Q 006916 262 SKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSI----------GLNPYGLYAYDTVWMIARALKLFLDQ 331 (625)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~----------~~~~~~~~~YDAv~~la~Al~~~~~~ 331 (625)
... ......++.++....+..+..++|.++|++++.... .++.+++.+|||++++++|++++...
T Consensus 235 ~~~-----~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~ 309 (395)
T 3h6g_A 235 VEP-----YRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQM 309 (395)
T ss_dssp CTT-----TTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred hHH-----hccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcC
Confidence 211 111112357777778888999999999988653211 13568999999999999999987432
Q ss_pred CCcccccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEcc-CCCccCCcEEEEEEeeCceeEEEeE
Q 006916 332 GNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQ-DRSLLHPSYDIINVIEHGYPQQIGY 410 (625)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~-~G~r~~~~~~I~~~~~~~~~~~vG~ 410 (625)
. ...+.|.....|.++.+|.++|++++|+|++|++.||+ +|+|....|+|++++++++ ++||.
T Consensus 310 ~---------------~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~-~~vG~ 373 (395)
T 3h6g_A 310 T---------------VSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGL-EKIGT 373 (395)
T ss_dssp C---------------CCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEE-EEEEE
T ss_pred C---------------CcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCc-eEEEE
Confidence 1 22346877778889999999999999999999999999 9999888999999998887 99999
Q ss_pred eeCCCCCccc
Q 006916 411 WSNYSGLSVV 420 (625)
Q Consensus 411 w~~~~~l~~~ 420 (625)
|++..|+++.
T Consensus 374 w~~~~g~~~~ 383 (395)
T 3h6g_A 374 WDPASGLNMT 383 (395)
T ss_dssp EETTTEECCC
T ss_pred EcCCCCcccc
Confidence 9998887654
No 11
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=5.5e-50 Score=422.13 Aligned_cols=363 Identities=16% Similarity=0.238 Sum_probs=299.3
Q ss_pred CCceEEEEEEeecCCC---CchhHHHHHHHHHHHHhcCCC----CCCCcEEEEEEecCCCChHHHHHHHHHHH----hcC
Q 006916 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPR----VLGGRKLSITMHDAKFNGFLSIMGALQFM----ETD 91 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~~~~----iL~g~~l~~~~~D~~~~~~~a~~~~~~l~----~~~ 91 (625)
.+++|+||+++|++.. .|.....|+++|+|+||++++ +|||++|+++++|+++++. ++..+.+++ +++
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCC
Confidence 4578999999999743 355678999999999999998 8999999999999999988 766665554 338
Q ss_pred cEEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCC--CCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecC
Q 006916 92 TLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPL--QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 169 (625)
Q Consensus 92 v~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~--~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~ 169 (625)
|.+||||.+|..+.+++++++.+++|+|+++++++.++++ +|||+||+.|++..++.++++++++|||+||++|++|+
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~ 164 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 164 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 9999999999999999999999999999999999999984 79999999999999999999999999999999999999
Q ss_pred CCCcc---hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCC
Q 006916 170 DQGRN---GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (625)
Q Consensus 170 ~~g~~---~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~ 246 (625)
+||+. ..+.+++.+++.|+||+..+.++.. ..++..++++|+ +++|+|++++...++..++++++++||..+
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~ 239 (441)
T 1jdp_A 165 KLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK----DLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSG 239 (441)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS----CCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred CcccchHHHHHHHHHHHHhcCcEEEEEEecCCc----ccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCC
Confidence 99999 9999999999999999988776543 346889999999 899999999999999999999999999888
Q ss_pred CeEEEeeCcchh------cccCCCCCChhhhhcccceEEEeeeCCCChhHHHHHHHHHhh-----cCCCCCCCchhhhHh
Q 006916 247 GYVWIATTWLST------FIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL-----SNGSIGLNPYGLYAY 315 (625)
Q Consensus 247 ~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~~~~~~~Y 315 (625)
.++||.+++... .+...+...........++.++..+.+..|.+++|.++|+.+ |+....++.+++.+|
T Consensus 240 ~~v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~Y 319 (441)
T 1jdp_A 240 DYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFH 319 (441)
T ss_dssp TCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHH
T ss_pred CEEEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHHHHHH
Confidence 899998873211 111111111111133556666777777889999999999876 431113456788999
Q ss_pred HHHHHHHHHHHHHHhcCCcccccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEE
Q 006916 316 DTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYD 395 (625)
Q Consensus 316 DAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~ 395 (625)
|||+++|+|||++..++.. +.++++|.++|++++|+|++|++.||++|++. ..|+
T Consensus 320 dAv~~~A~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~ 374 (441)
T 1jdp_A 320 DAILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFS 374 (441)
T ss_dssp HHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEE
T ss_pred HHHHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEE
Confidence 9999999999998754210 22689999999999999999999999999974 8899
Q ss_pred EEEEee--CceeEEEeEeeCCCC
Q 006916 396 IINVIE--HGYPQQIGYWSNYSG 416 (625)
Q Consensus 396 I~~~~~--~~~~~~vG~w~~~~~ 416 (625)
|++++. ++.+++||.|++..+
T Consensus 375 I~~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 375 VIAMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp EEEEEETTTTEEEEEEEEETTTT
T ss_pred EEecccCCCCceEEEEEEcCCCC
Confidence 999973 455699999998653
No 12
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=8.2e-50 Score=411.14 Aligned_cols=363 Identities=19% Similarity=0.302 Sum_probs=289.6
Q ss_pred ceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEcCCChHH
Q 006916 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (625)
Q Consensus 25 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~-~~~~~a~~~~~~l~~~~v~aviG~~~s~~ 103 (625)
+.|+||++||++. ...+.|+++|+|+||++ |++|++++.|++ +++..+++.+|++++++|.+||||.+|..
T Consensus 1 ~~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~ 72 (376)
T 3hsy_A 1 NSIQIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (376)
T ss_dssp CEEEEEEEEETTC---HHHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CceeEEEEeCCCC---HHHHHHHHHHHHHHhcC-----CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhH
Confidence 3699999999975 46799999999999988 689999999965 59999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHH
Q 006916 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (625)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l 183 (625)
+.+++++++.+++|+|++++. . ...++|+||+.|+ ++.++++++++|||++|++|+ |++||....+.|.+.+
T Consensus 73 ~~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~ 144 (376)
T 3hsy_A 73 VNTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (376)
T ss_dssp HHHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHH
T ss_pred HHHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHh
Confidence 999999999999999998662 2 2346789999887 899999999999999999999 8999999999999999
Q ss_pred hccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhcccCC
Q 006916 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 263 (625)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 263 (625)
++.|+||+..+.++........|+..++.+|+++++++||+++....+..++++++++||..++|+||.+++.....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~- 223 (376)
T 3hsy_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (376)
T ss_dssp HHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG-
T ss_pred hhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch-
Confidence 9999999987765432001357899999999999999999999999999999999999999889999998753322221
Q ss_pred CCCChhhhhcccceEEEeeeCCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcCCcccc
Q 006916 264 SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 337 (625)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~ 337 (625)
........+++++....++.|.+++|.++|+++++.. ..++.+++++||||+++++|++++..++.....
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~ 299 (376)
T 3hsy_A 224 ----LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (376)
T ss_dssp ----GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred ----HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 1112223347888888888999999999999987632 136788999999999999999999865432110
Q ss_pred cCCCccCCCCCCcccc--CcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeCceeEEEeEeeCCC
Q 006916 338 SNDTKLNGLGGGTLNL--GALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415 (625)
Q Consensus 338 ~~~~~~~~~~~~~~~c--~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~vG~w~~~~ 415 (625)
.+....| ....+|.++.+|.++|++++|+|++|+|+||++|+|....|+|+++.+++. ++||+|++..
T Consensus 300 ---------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~-~~VG~w~~~~ 369 (376)
T 3hsy_A 300 ---------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP-RKIGYWSEVD 369 (376)
T ss_dssp ---------CCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEE-EEEEEEETTT
T ss_pred ---------CCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCc-eEEEEEcCCC
Confidence 1122356 555668889999999999999999999999999999999999999998887 9999999987
Q ss_pred CCc
Q 006916 416 GLS 418 (625)
Q Consensus 416 ~l~ 418 (625)
|+.
T Consensus 370 g~~ 372 (376)
T 3hsy_A 370 KMV 372 (376)
T ss_dssp EEE
T ss_pred Cce
Confidence 754
No 13
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=2.4e-49 Score=416.80 Aligned_cols=360 Identities=15% Similarity=0.207 Sum_probs=301.4
Q ss_pred ceEEEEEEeecCC---CCchhHHH-HHHHHHHHHhcCCCCCCCcEEEEEEecC-----CCChHHHHHHHHHHHh-cCcEE
Q 006916 25 EVLNVGAIFSFGT---VNGQVSRI-AMKAAQDDINSDPRVLGGRKLSITMHDA-----KFNGFLSIMGALQFME-TDTLA 94 (625)
Q Consensus 25 ~~i~IG~l~~~~~---~~g~~~~~-a~~~Av~~IN~~~~iL~g~~l~~~~~D~-----~~~~~~a~~~~~~l~~-~~v~a 94 (625)
++|+||+++|++. ..|..... |+++|+|+||+++++|||++|+++++|+ +|++..++..+++++. ++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 5799999999973 45667777 9999999999999999999999999999 5556688888888774 59999
Q ss_pred EEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCC-CCCceEEccCchHHHHHHHHHHHHHcCCcEEEEE------Ee
Q 006916 95 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAI------FN 167 (625)
Q Consensus 95 viG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii------~~ 167 (625)
||||.+|..+.+++++++.+++|+|+++++++.++++ .|||+||+.|++..++.++++++++|||+||++| ++
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~ 160 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGD 160 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCC
Confidence 9999999999999999999999999999999999984 6999999999999999999999999999999999 66
Q ss_pred cCCCCcchHHHHHHHHhc-cceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCC
Q 006916 168 DDDQGRNGVTALGDKLAE-IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (625)
Q Consensus 168 d~~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~ 246 (625)
|+++| ...+.+.+.+.+ .|+||+..+.++.. ..++..++++|++ ++|+||+++...++..++++++++||..+
T Consensus 161 ~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 234 (435)
T 1dp4_A 161 DRPCF-FIVEGLYMRVRERLNITVNHQEFVEGD----PDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGE 234 (435)
T ss_dssp CCHHH-HHHHHHHHHHHHHHCCEEEEEEECTTC----GGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTT
T ss_pred cchHH-HHHHHHHHHHHhhcCeEEEEEEEecCc----hhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCC
Confidence 77788 566778888888 89999988766433 6789999999998 89999999999999999999999999877
Q ss_pred CeEEEeeCcchhccc---------CC---CCCChhhhhcccceEEEeeeCCCChhHHHHHHHHHhhcCC----CC---CC
Q 006916 247 GYVWIATTWLSTFID---------SK---SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG----SI---GL 307 (625)
Q Consensus 247 ~~~~i~~~~~~~~~~---------~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~----~~---~~ 307 (625)
+++||.++.+..... .. ........++.+|++.+.+..+..+.+++|.++|++.++. .. .+
T Consensus 235 ~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 314 (435)
T 1dp4_A 235 DYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLK 314 (435)
T ss_dssp TCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGG
T ss_pred CEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccccchh
Confidence 799999986644210 00 0001234466889888888777888899999998776531 11 24
Q ss_pred CchhhhHhHHHHHHHHHHHHHHhcCCcccccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCC
Q 006916 308 NPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDR 387 (625)
Q Consensus 308 ~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G 387 (625)
+.+++.+||||+++|+||+++..++.. +.++++|.++|++++|+|++|++.||++|
T Consensus 315 ~~~~~~~ydav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~g 370 (435)
T 1dp4_A 315 NIIPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLKIDRNG 370 (435)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEEECTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCC------------------------CCCHHHHHHHHhCceeeccceeEEECCCC
Confidence 567889999999999999998764321 12589999999999999999999999999
Q ss_pred CccCCcEEEEEEe-eCceeEEEeEeeCCC
Q 006916 388 SLLHPSYDIINVI-EHGYPQQIGYWSNYS 415 (625)
Q Consensus 388 ~r~~~~~~I~~~~-~~~~~~~vG~w~~~~ 415 (625)
++. ..|+|++++ .++.+++||.|++..
T Consensus 371 ~~~-~~~~i~~~~~~~g~~~~vg~~~~~~ 398 (435)
T 1dp4_A 371 DRD-TDFSLWDMDPETGAFRVVLNYNGTS 398 (435)
T ss_dssp BBC-CCEEEEEECTTTCCEEEEEEECTTT
T ss_pred Ccc-ceeEEEEecCCCCcEEEEEEecCCC
Confidence 975 799999994 234459999998764
No 14
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=4.2e-49 Score=407.54 Aligned_cols=341 Identities=21% Similarity=0.303 Sum_probs=282.7
Q ss_pred CCceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHH-HHhcCcEEEEc----
Q 006916 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQ-FMETDTLAIVG---- 97 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~-l~~~~v~aviG---- 97 (625)
.+++|+||+++|++ ..+.|+++|+++||++++. .+++|+++..|+++|+..+++.+++ |++++|.+|||
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~-~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~ 75 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFT-RKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPP 75 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCC-SSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC--
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccC-CceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCC
Confidence 46799999999997 6799999999999999864 4799999999999999999988777 78889999999
Q ss_pred -CCChHHHHHHHHhhhcCCCcEEeeccCCCCCCC-CCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcch
Q 006916 98 -PQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNG 175 (625)
Q Consensus 98 -~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~ 175 (625)
|.+|..+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.++++++++|||+||++|++|++||+..
T Consensus 76 ~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~ 155 (384)
T 3qek_A 76 APTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAA 155 (384)
T ss_dssp ------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHH
Confidence 567788899999999999999999999999998 579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccceEE-----------EEe-------eecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 006916 176 VTALGDKLAEIRCKI-----------SYK-------SALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (625)
Q Consensus 176 ~~~l~~~l~~~g~~v-----------~~~-------~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~ 237 (625)
.+.|++.+++.|+++ .+. +.++.. .....++...+++|+++++|+||+++...++..++++
T Consensus 156 ~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~-~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~ 234 (384)
T 3qek_A 156 QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQF-EPGTKNLTALLLEAKELEARVIILSASEDDATAVYKS 234 (384)
T ss_dssp HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEE-CTTCSCCHHHHHHHHTSSCCEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCccccccccccceeeeccccCcccceeccc-CCchhhHHHHHHHHHhcCCcEEEEECCHHHHHHHHHH
Confidence 999999999998743 322 222110 0125688999999999999999999999999999999
Q ss_pred HHHcCCCCCCeEEEeeCcchhcccCCCCCChhhhhcccceEEEeeeCCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHH
Q 006916 238 AQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDT 317 (625)
Q Consensus 238 a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDA 317 (625)
++++||++.+++||.++.+... .......+|++++.++.++.+ ++.+|||
T Consensus 235 a~~~g~~~~~~~~i~~~~~~~~--------~~~~~~~~g~lg~~~~~~~~~----------------------~~~~YdA 284 (384)
T 3qek_A 235 AAMLDMTGAGYVWLVGEREISG--------SALRYAPDGIIGLQLINGKNE----------------------SAHISDA 284 (384)
T ss_dssp HHHTTCSSTTCEEECCSGGGSG--------GGGSSCCTTCEEEEETTTTCH----------------------HHHHHHH
T ss_pred HHHcCCccCCeEEEEecccccc--------ccccccCCccEEEEEcCCCch----------------------hHHHHHH
Confidence 9999999888999999876432 123456889999998765432 6789999
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCccCCCCCCccccC-cccccCchHHHHHHHHhccc-ccceeeEEEccCCCccCCcEE
Q 006916 318 VWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLG-ALSIFDGGKKFLANILQTNM-TGLSGPIHFNQDRSLLHPSYD 395 (625)
Q Consensus 318 v~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~-~~~~~~~~~~l~~~l~~~~f-~g~tG~v~Fd~~G~r~~~~~~ 395 (625)
|+++|+|+|++..+... ......|. ...+|..+..|.+.+++++| +|++|++.||++|+|....|+
T Consensus 285 V~~~a~Al~~~~~~~~~------------~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~~~ 352 (384)
T 3qek_A 285 VAVVAQAIHELFEMENI------------TDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYS 352 (384)
T ss_dssp HHHHHHHHHHHHTSSSC------------CCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCCEE
T ss_pred HHHHHHHHHHHHhccCC------------CCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcccEE
Confidence 99999999999865421 11222453 34578889999999999998 999999999999998789999
Q ss_pred EEEEeeCceeEEEeEeeC
Q 006916 396 IINVIEHGYPQQIGYWSN 413 (625)
Q Consensus 396 I~~~~~~~~~~~vG~w~~ 413 (625)
|+|+++.++ ++||.|+.
T Consensus 353 I~~~~~~~~-~~VG~w~~ 369 (384)
T 3qek_A 353 IMNLQNRKL-VQVGIFNG 369 (384)
T ss_dssp EEEEETTEE-EEEEEECS
T ss_pred EEEEcCCce-EEEEEEeC
Confidence 999998776 99999984
No 15
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=1.8e-48 Score=402.48 Aligned_cols=363 Identities=19% Similarity=0.257 Sum_probs=308.7
Q ss_pred CCCceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEcCCC
Q 006916 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQS 100 (625)
Q Consensus 22 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~-~~~~a~~~~~~l~~~~v~aviG~~~ 100 (625)
..+++|+||+++|++.. ..+.|+++|+|+||+++ +|++++.|+++ ++..+++++|++++++|.+||||.+
T Consensus 6 ~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g------~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~~ 76 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP------KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYE 76 (384)
T ss_dssp CCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS------EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC------ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCCC
Confidence 45789999999999864 78999999999999875 99999999886 9999999999999999999999999
Q ss_pred hHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHH
Q 006916 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALG 180 (625)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~ 180 (625)
|..+.+++++++.+++|+|+++ ++.++ ..+|.||+.|+ ++.+++++++++||++|++|+ |++||....+.+.
T Consensus 77 S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~ 148 (384)
T 3saj_A 77 RRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVL 148 (384)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHH
Confidence 9999999999999999999984 44443 35667888887 899999999999999999999 6789999999999
Q ss_pred HHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhcc
Q 006916 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (625)
Q Consensus 181 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (625)
+.+++.|+||+..+.++.. ..++..++.+|+++++++|++++...++..++++++++||..++|+|++++.+....
T Consensus 149 ~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~ 224 (384)
T 3saj_A 149 DTAAEKNWQVTAVNILTTT----EEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDI 224 (384)
T ss_dssp HHHHHHTCEEEEEEGGGCC----HHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGS
T ss_pred HHhhhcCceEEEEEeccCC----chhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccc
Confidence 9999999999988755443 788999999999999999999999999999999999999998899999988543322
Q ss_pred cCCCCCChhhhhcccceEEEeeeCCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcCCc
Q 006916 261 DSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (625)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDAv~~la~Al~~~~~~~~~ 334 (625)
+. ........|++++.+..+..+.+++|.++|+++++.. ..++.+++++||||+++++|++++...+..
T Consensus 225 ~~-----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~ 299 (384)
T 3saj_A 225 DL-----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRID 299 (384)
T ss_dssp CH-----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cH-----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 21 2233455678899888888999999999999887521 134667999999999999999999865432
Q ss_pred ccccCCCccCCCCCCccccCcc--cccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeCceeEEEeEee
Q 006916 335 ISFSNDTKLNGLGGGTLNLGAL--SIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWS 412 (625)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~--~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~vG~w~ 412 (625)
... .+....|... ..|.++.+|.++|++++|+|++|+++||++|++.+..|+|+++++++. .+||.|+
T Consensus 300 ~~~---------~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~-~~VG~W~ 369 (384)
T 3saj_A 300 ISR---------RGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGI-RKIGYWN 369 (384)
T ss_dssp CCC---------CCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEE-EEEEEEE
T ss_pred eec---------CCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCc-ceeEEEc
Confidence 211 1122356553 457789999999999999999999999999999999999999998887 9999999
Q ss_pred CCCCCccc
Q 006916 413 NYSGLSVV 420 (625)
Q Consensus 413 ~~~~l~~~ 420 (625)
+..|+.+.
T Consensus 370 ~~~gl~~~ 377 (384)
T 3saj_A 370 EDDKFVPA 377 (384)
T ss_dssp TTTEEEEC
T ss_pred CCCCcccc
Confidence 98876554
No 16
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=3.7e-43 Score=357.80 Aligned_cols=340 Identities=15% Similarity=0.228 Sum_probs=260.4
Q ss_pred CceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe-cCCCChHHHHHHHHHHHhc-CcEEEEc-CCC
Q 006916 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMH-DAKFNGFLSIMGALQFMET-DTLAIVG-PQS 100 (625)
Q Consensus 24 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~-D~~~~~~~a~~~~~~l~~~-~v~aviG-~~~ 100 (625)
+..+.||++|..+.. +.+++-|++..|.-. +..+|..++. .+.+||..+...+|+++.. +|.|||| +.+
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s 73 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHH---LSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 73 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC------------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESS
T ss_pred CCceEEEEEEcccch-----hhhhccccCcccccc---CCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 457899999977653 889999999998544 2367776554 4667999999999999975 7989886 444
Q ss_pred hHHHHH--HHHhhhcCCCcEEeeccCCC-CCCC-CCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchH
Q 006916 101 AVMAHV--LSHLANELQVPLLSFTALDP-TLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 176 (625)
Q Consensus 101 s~~~~~--va~~~~~~~iP~Is~~~~~~-~ls~-~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~ 176 (625)
+..+.+ ++.+++.++||+||++++++ .|++ .+||+|||+.|++..|+.+++++++||||+||++||+|+ . +.
T Consensus 74 ~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~-~---g~ 149 (364)
T 3qel_B 74 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF-P---GY 149 (364)
T ss_dssp CCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC-T---TH
T ss_pred CchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC-c---cH
Confidence 444544 89999999999999999998 8998 579999999999999999999999999999999999884 3 45
Q ss_pred HHHHHHHhcc--c--eEEEEeeecCCCCCCChhHHHHHH-HHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006916 177 TALGDKLAEI--R--CKISYKSALPPDQSVTETDVRNEL-VKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 177 ~~l~~~l~~~--g--~~v~~~~~~~~~~~~~~~~~~~~l-~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (625)
+.|.+.+++. | +|+.+...++.. ....++...+ ++|++++++|||++++.+.+..++++|.++||++++|+||
T Consensus 150 ~~~~~~l~~~~~~~~ici~~~~~i~~~--~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI 227 (364)
T 3qel_B 150 QDFVNKIRSTIENSFVGWELEEVLLLD--MSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWI 227 (364)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEEEEEEC--TTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEE
T ss_pred HHHHHHHHHHhhccccceEEEEEEccC--CCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Confidence 5666666654 4 488776665543 2234566778 6899999999999999999999999999999999999999
Q ss_pred eeCcchhcccCCCCCChhhhhcccceEEEeeeCCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhc
Q 006916 252 ATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQ 331 (625)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~ 331 (625)
+++.+....+.. ......|++++++.. |++ ...+++||||+++|+|++++.++
T Consensus 228 ~t~~~~~~~~~~------~~~~~~g~~~~~~~~------------W~~---------~~~~~~yDaV~~~A~A~~~~~~~ 280 (364)
T 3qel_B 228 VPSLVAGDTDTV------PSEFPTGLISVSYDE------------WDY---------GLPARVRDGIAIITTAASDMLSE 280 (364)
T ss_dssp ECHHHHCSTTCC------CTTSCTTCEECCBCT------------TTS---------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EecccccCcccc------cccCCCceEEEeecc------------chh---------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 998754332221 124567888887653 221 23568999999999999998765
Q ss_pred CCcccccCCCccCCCCCCccccCccc--ccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEe-eCceeEEE
Q 006916 332 GNTISFSNDTKLNGLGGGTLNLGALS--IFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI-EHGYPQQI 408 (625)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~c~~~~--~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~-~~~~~~~v 408 (625)
.... ......|.... .|.+|..|.++|++++|+|+ ++.||++|+|.++.|+|+|++ +.+. ++|
T Consensus 281 ~~~i-----------~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~-~~V 346 (364)
T 3qel_B 281 HSFI-----------PEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKW-ERV 346 (364)
T ss_dssp TSCC-----------CCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCE-EEE
T ss_pred cCCC-----------CCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCc-EEE
Confidence 3221 11234676654 57789999999999999998 899999999999999999998 4555 999
Q ss_pred eEeeCCCCCcc
Q 006916 409 GYWSNYSGLSV 419 (625)
Q Consensus 409 G~w~~~~~l~~ 419 (625)
|+|+.. +|+|
T Consensus 347 G~W~~~-~L~~ 356 (364)
T 3qel_B 347 GKWKDK-SLQM 356 (364)
T ss_dssp EEECSS-CEEE
T ss_pred EEECCC-eEEe
Confidence 999843 4443
No 17
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=1.3e-39 Score=337.07 Aligned_cols=353 Identities=14% Similarity=0.141 Sum_probs=297.2
Q ss_pred CCceEEEEEEeecCCC--CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCC
Q 006916 23 KPEVLNVGAIFSFGTV--NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQ 99 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~~--~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~-~v~aviG~~ 99 (625)
..++|+||+++|++.. .|.....|+++|+++||+++++++|++|+++++|+++++..+.+.+++++.+ +|.+||||.
T Consensus 2 s~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~ 81 (387)
T 3i45_A 2 SLEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTF 81 (387)
T ss_dssp CCCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECC
T ss_pred CCCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCc
Confidence 3578999999999763 4667899999999999999999866999999999999999999999999985 999999999
Q ss_pred ChHHHHHHHHhhhcCCCcEEeeccCCCCCCC-CCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHH
Q 006916 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178 (625)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~ 178 (625)
+|..+.++++++...++|+|++.++++.++. ..+|++||+.|++..++.++++++.++||++|++|+.|++||+...+.
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~ 161 (387)
T 3i45_A 82 LSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVAR 161 (387)
T ss_dssp SHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHH
Confidence 9999999999999999999999888887775 568999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc--ceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcc
Q 006916 179 LGDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (625)
Q Consensus 179 l~~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (625)
+++.+++. |++++....++.+ ..++...+++++++++++|++.+....+..+++++.+.|+... +++.+...
T Consensus 162 ~~~~l~~~~~g~~vv~~~~~~~~----~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~~~ 235 (387)
T 3i45_A 162 FKELLLAARPEVTFVAEQWPALY----KLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLT 235 (387)
T ss_dssp HHHHHHHHCTTCEEEEEECCCTT----CCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEEEE
T ss_pred HHHHHHHhCCCcEEEeeecCCCC----CcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEeecC
Confidence 99999998 8999887777755 5678999999999999999999999999999999999998543 34433222
Q ss_pred --hhcccCCCCCChhhhhcccceEEEee-e-CCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcC
Q 006916 257 --STFIDSKSPLSLKTAKSILGALTLRQ-H-TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQG 332 (625)
Q Consensus 257 --~~~~~~~~~~~~~~~~~~~g~~~~~~-~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~ 332 (625)
...+.. ......+|++.... + ..+.+..++|.++|+++++ ..++.+++.+|||++++++|++++..
T Consensus 236 ~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~Yda~~~~a~Al~~ag~-- 305 (387)
T 3i45_A 236 GEPEYLNP------LKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWK--EDPFVGSLVGYNTLTAMAVAFEKAGG-- 305 (387)
T ss_dssp ESHHHHGG------GGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTS--
T ss_pred CChHHHHH------hhhhccCceEEecccccCCCCHHHHHHHHHHHHHHC--CCCCcHHHHHHHHHHHHHHHHHHhCC--
Confidence 111110 11234677665532 2 2567889999999999987 46678899999999999999999731
Q ss_pred CcccccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEe-eCceeEEEeEe
Q 006916 333 NTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI-EHGYPQQIGYW 411 (625)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~-~~~~~~~vG~w 411 (625)
.++.++.++|++++|+|++|+++|++++++......|.+++ .++. ..++.|
T Consensus 306 ---------------------------~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~-~~i~~w 357 (387)
T 3i45_A 306 ---------------------------TESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGK-GVMVDW 357 (387)
T ss_dssp ---------------------------CCHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTE-EEEEEE
T ss_pred ---------------------------CCHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCc-eeEEee
Confidence 15899999999999999999999998555567778888876 5666 889999
Q ss_pred eCCCCCcc
Q 006916 412 SNYSGLSV 419 (625)
Q Consensus 412 ~~~~~l~~ 419 (625)
....+...
T Consensus 358 ~~~~~~~~ 365 (387)
T 3i45_A 358 RYVDGGSV 365 (387)
T ss_dssp EEECGGGG
T ss_pred EEeCchhc
Confidence 87665443
No 18
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=1.1e-39 Score=341.24 Aligned_cols=330 Identities=14% Similarity=0.101 Sum_probs=272.0
Q ss_pred CCCceEEEEEEeecCCCC---chhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CChHHHHHHHHHHHh-cCcEEEE
Q 006916 22 LKPEVLNVGAIFSFGTVN---GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFME-TDTLAIV 96 (625)
Q Consensus 22 ~~~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~-~~~~~a~~~~~~l~~-~~v~avi 96 (625)
...++|+||+++|++... |.....|+++|+++||++++++ |++|+++++|++ +++..+++.+++++. ++|.+||
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aii 88 (419)
T 3h5l_A 10 QSSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALI 88 (419)
T ss_dssp ---CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ccCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 456799999999998644 7788999999999999999987 899999999987 699999999999998 6999999
Q ss_pred cCCChHHHHHHHHhhhcCCCcEEeeccCCCCCC-----C-CCCCceEEccCchHHHHHHHHHHHHHc--------CCcEE
Q 006916 97 GPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-----P-LQYPFFVQTAPNDLYLMSAIAEMVSYF--------GWGEV 162 (625)
Q Consensus 97 G~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls-----~-~~~~~~~r~~ps~~~~~~al~~ll~~~--------~W~~v 162 (625)
||.+|..+.+++++++.+++|+|+++ +++.++ + ..|+++||+.|++..++.+++++++++ +|++|
T Consensus 89 G~~~s~~~~a~~~~~~~~~ip~i~~~-~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (419)
T 3h5l_A 89 AGYNLENGTALHDVAADAGVIAMHAN-TVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKI 167 (419)
T ss_dssp CSCCSSCSCHHHHHHHHHTCEEEECC-CCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEE
T ss_pred ccccchhHHHhHHHHHHcCCeEEEcC-cchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEE
Confidence 99999999999999999999999964 333221 2 468999999999999999999999986 89999
Q ss_pred EEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc-hhhHHHHHHHHHHc
Q 006916 163 IAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDVAQRL 241 (625)
Q Consensus 163 ~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-~~~~~~il~~a~~~ 241 (625)
++|+++++||....+.|++.+++.|++|+..+.++.+ ..|+..++++|+++++++|++.+. ++++..+++++.+.
T Consensus 168 ail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~ 243 (419)
T 3h5l_A 168 AIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP----VSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTD 243 (419)
T ss_dssp EEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS----CSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTS
T ss_pred EEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC----CccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHc
Confidence 9999999999999999999999999999998888865 568899999999999999999865 57899999999999
Q ss_pred CCCCCCeEEEeeCcchhcccCCCCCChhhhhcccceEEEeee-CCCChhHHHHHHHHHhhcCCCCCCC-chhhhHhHHHH
Q 006916 242 GMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQH-TPDSKRRRDFVSRWNTLSNGSIGLN-PYGLYAYDTVW 319 (625)
Q Consensus 242 g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~YDAv~ 319 (625)
|+ ...|+.++.+... +.. .......+|++..... .+..+..++|.++|+++++. .+. .+++.+|||++
T Consensus 244 g~---~~~~~~~~~~~~~-~~~----~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~--~p~~~~a~~~Yda~~ 313 (419)
T 3h5l_A 244 PT---NSLVYLQYGASLA-AFR----DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYGD--LSSTASGCQTYSALY 313 (419)
T ss_dssp CC---SCEEEECSGGGSH-HHH----HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCT--TSCHHHHHHHHHHHH
T ss_pred CC---CceEEecCCCCcH-HHH----HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhCC--CCCcchhHHHHHHHH
Confidence 97 3456666544321 110 2233556787655443 34567899999999999873 343 58889999999
Q ss_pred HHHHHHHHHHhcCCcccccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCc
Q 006916 320 MIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSL 389 (625)
Q Consensus 320 ~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r 389 (625)
++++|++++..... ...+.++.++.++|++++|+|++|.++||++|++
T Consensus 314 ~~~~a~~~a~~~~~----------------------~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~ 361 (419)
T 3h5l_A 314 AYSIAAALAGGPGA----------------------PYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQS 361 (419)
T ss_dssp HHHHHHHHTTSCCC----------------------TTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCB
T ss_pred HHHHHHHHhcCCcc----------------------CCCccCHHHHHHHHHhCCcccCceEEEECCCCCc
Confidence 99999998643210 0112258999999999999999999999999984
No 19
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=8.8e-39 Score=327.02 Aligned_cols=345 Identities=14% Similarity=0.128 Sum_probs=292.2
Q ss_pred ceEEEEEEeecCCC---CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 006916 25 EVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (625)
Q Consensus 25 ~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s 101 (625)
++|+||+++|++.. .|.....|+++|+++||+++++ +|+++++++.|+++++..+.+.++++++++|.+||||.+|
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi-~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGI-NGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHHCCCcEEEcCCCc
Confidence 47999999999753 4677899999999999999998 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH-HHcCCcEEEEEEecCCCCcchHHHHH
Q 006916 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFNDDDQGRNGVTALG 180 (625)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll-~~~~W~~v~ii~~d~~~g~~~~~~l~ 180 (625)
..+.++++++...++|+|++.++++.+++..++++||+.|++..++.++++++ +++||++|++|+.++++|....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~ 159 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETK 159 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHH
Confidence 99999999999999999999888888887778999999999999999999965 56799999999999999999999999
Q ss_pred HHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhcc
Q 006916 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (625)
Q Consensus 181 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (625)
+.+++.|+++.....++.. ..++...++++++.++++|++++....+..+++++++.|+.. .|+.++.+...
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~- 231 (356)
T 3ipc_A 160 KAANAAGVTEVMYEGVNVG----DKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKA---KLVSGDGIVSN- 231 (356)
T ss_dssp HHHHHTTCCCSEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCC---EEEECGGGCSH-
T ss_pred HHHHHcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCC---cEEEeccccCH-
Confidence 9999999998877777654 556778899999999999999999999999999999999764 36665543221
Q ss_pred cCCCCCChhhhhcccceEEEeeeCC-CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCcccccC
Q 006916 261 DSKSPLSLKTAKSILGALTLRQHTP-DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (625)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~ 339 (625)
... .......+|++....+.+ ..+..++|.++|+++ + ..++.+++..|||++++++|++++..
T Consensus 232 ~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~--~~p~~~~~~~yda~~~~~~al~~ag~--------- 295 (356)
T 3ipc_A 232 ELA----SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G--FNPEAYTLYSYAAMQAIAGAAKAAGS--------- 295 (356)
T ss_dssp HHH----HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T--CCCCTTHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHH----HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C--CCcchhHHHHHHHHHHHHHHHHHhCC---------
Confidence 000 123355778777665543 467889999999988 5 45677899999999999999999632
Q ss_pred CCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeC--ceeEEEeEeeCC
Q 006916 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEH--GYPQQIGYWSNY 414 (625)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~--~~~~~vG~w~~~ 414 (625)
.++..+.++|++.+|+|++|++.||++|++....+.|++++.. |.|+.+..|.+.
T Consensus 296 --------------------~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 296 --------------------VEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp --------------------CCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred --------------------CCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 1589999999999999999999999999988789999999864 666999888653
No 20
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=1.5e-38 Score=326.64 Aligned_cols=337 Identities=16% Similarity=0.157 Sum_probs=284.0
Q ss_pred CCceEEEEEEeecCCC---CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhc-CcEEEEc
Q 006916 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMET-DTLAIVG 97 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~-~~~~a~~~~~~l~~~-~v~aviG 97 (625)
..++|+||+++|++.. .|...+.|+++|++++| +++ .|++|+++++|+++ +|..+++.+.+|+.+ +|.+|||
T Consensus 2 ~Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi-~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG 78 (371)
T 4f06_A 2 NADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKV-AGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAG 78 (371)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEE-TTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3578999999999854 47788999999999999 556 49999999999976 899999999999976 9999999
Q ss_pred CCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHH
Q 006916 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (625)
Q Consensus 98 ~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~ 177 (625)
|.+|..+.+++++++..++|+|+++++++.++.. .||+||+.|++..++.++++++++.+|+++++|++|++||....+
T Consensus 79 ~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~ 157 (371)
T 4f06_A 79 LYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAET 157 (371)
T ss_dssp CCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred cccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHH
Confidence 9999999999999999999999998888877654 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc-hhhHHHHHHHHHHcCCCCCCeEEEeeCcc
Q 006916 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (625)
Q Consensus 178 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (625)
.+++.+++.|++|+..+.++.+ ..|+..++.+|+++++++|++... ......+++++.+.|+......++.....
T Consensus 158 ~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 233 (371)
T 4f06_A 158 AFKKTFEAEGGKVVEAVRMPLS----TTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDV 233 (371)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGG
T ss_pred HHHHHHHhcCCceEEEEecCcc----cccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEeccc
Confidence 9999999999999999999876 678999999999999999988765 46788899999999987766666665533
Q ss_pred hhcccCCCCCChhhhhcccceEEEeeeCC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCc
Q 006916 257 STFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (625)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~ 334 (625)
...... ........|++...++.+ .+|..++|.++|+++++....++.++..+|||+++++.|+++....
T Consensus 234 ~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~a~~~Yda~~~l~~Ai~~~ag~--- 305 (371)
T 4f06_A 234 VTEPDL-----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKLDEVTMTSVAAYDGARLIYKMIEATSGK--- 305 (371)
T ss_dssp GCGGGH-----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHHHHTTTS---
T ss_pred CCHHHH-----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHhcCC---
Confidence 221111 223455678777666544 4678899999999988754557778899999999999999863111
Q ss_pred ccccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEe
Q 006916 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI 400 (625)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~ 400 (625)
.++.+++++|++++|+|++|+++||++++.....+.|.+++
T Consensus 306 -------------------------~d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~ 346 (371)
T 4f06_A 306 -------------------------SDPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVE 346 (371)
T ss_dssp -------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEE
T ss_pred -------------------------CCHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEE
Confidence 15899999999999999999999998877666677777776
No 21
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=1.4e-37 Score=316.91 Aligned_cols=340 Identities=14% Similarity=0.165 Sum_probs=282.2
Q ss_pred ceEEEEEEeecCCC---CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 006916 25 EVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (625)
Q Consensus 25 ~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s 101 (625)
++|+||+++|++.. .|.....++++|+++||+++++ +|++|++++.|+++++..+.+.+.++++++|.+|||+.+|
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi-~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEcCCCc
Confidence 47999999999754 3667889999999999999998 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHH-HcCCcEEEEEEecCCCCcchHHHHH
Q 006916 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGWGEVIAIFNDDDQGRNGVTALG 180 (625)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~-~~~W~~v~ii~~d~~~g~~~~~~l~ 180 (625)
..+.++.+++...++|+|++.++++.+++..++++||+.|++..++.++++++. ++||++|++|+.++.++....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~ 159 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHH
Confidence 888889999999999999988877777665589999999999999999999984 5799999999998888888899999
Q ss_pred HHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhcc
Q 006916 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (625)
Q Consensus 181 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (625)
+.+++.|+++.....++.. ..++...++++++.++++|++.+....+..+++++++.|+..+ |+.++.+...
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~- 231 (346)
T 1usg_A 160 DGLKAANANVVFFDGITAG----EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNA- 231 (346)
T ss_dssp HHHHHTTCCEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCT-
T ss_pred HHHHHcCCEEEEEeccCCC----CcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcH-
Confidence 9999999999876666644 3456678888888899999999888889999999999998643 7776544221
Q ss_pred cCCCCCChhhhhcccceEEEeeeC-CCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCcccccC
Q 006916 261 DSKSPLSLKTAKSILGALTLRQHT-PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (625)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~ 339 (625)
... .......+|++...++. ...+..++|.++|+++++ ..++.+++.+|||++++++|++++..
T Consensus 232 ~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~yda~~~~~~al~~~g~--------- 296 (346)
T 1usg_A 232 SLS----NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK--DPSGPYVWITYAAVQSLATALERTGS--------- 296 (346)
T ss_dssp THH----HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTC--CCCCHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred HHH----HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHHHHHHHHhCC---------
Confidence 000 12234577887766542 346778999999998886 45677889999999999999999621
Q ss_pred CCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeCceeEEE
Q 006916 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQI 408 (625)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~v 408 (625)
. ++..+.++|++.+|+|++|++.||++|++....|.|++++.+|.++.+
T Consensus 297 -------------------~-~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 297 -------------------D-EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp -------------------C-CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred -------------------C-CHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 1 589999999999999999999999999987678999999733433543
No 22
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-37 Score=319.27 Aligned_cols=342 Identities=15% Similarity=0.197 Sum_probs=287.5
Q ss_pred CCCceEEEEEEeecCCC---CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 006916 22 LKPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 97 (625)
Q Consensus 22 ~~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~-~v~aviG 97 (625)
..+.+++||+++|++.. .|.....|+++|++++|+ ++ |++++++++|+++++..+.+.+++++.+ +|.+|||
T Consensus 12 ~~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i~-G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG 87 (366)
T 3td9_A 12 HMRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---VL-GEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIG 87 (366)
T ss_dssp ----CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---ET-TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred hhcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---cC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEc
Confidence 35678999999999854 467889999999999998 54 8999999999999999999999999988 5999999
Q ss_pred CCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH-HHcCCcEEEEEEe-cCCCCcch
Q 006916 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFN-DDDQGRNG 175 (625)
Q Consensus 98 ~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll-~~~~W~~v~ii~~-d~~~g~~~ 175 (625)
|.+|..+.++++++...++|+|++.++++.+++ .+|++||+.|++..++.++++++ +++||++|++|+. +++|+...
T Consensus 88 ~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~ 166 (366)
T 3td9_A 88 EVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGL 166 (366)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHH
T ss_pred cCCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHH
Confidence 999999999999999999999999888776654 47999999999999999999998 5589999999986 67888888
Q ss_pred HHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCc
Q 006916 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255 (625)
Q Consensus 176 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 255 (625)
.+.+.+.+++.|+++.... ++.+ ..++...++++++.++++|++.+....+..+++++++.|+.. .|+..+.
T Consensus 167 ~~~~~~~~~~~G~~v~~~~-~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~ 238 (366)
T 3td9_A 167 SNFFINKFTELGGQVKRVF-FRSG----DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTG---YILAGDG 238 (366)
T ss_dssp HHHHHHHHHHTTCEEEEEE-ECTT----CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCS---EEEECGG
T ss_pred HHHHHHHHHHCCCEEEEEE-eCCC----CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCc---eEEeeCC
Confidence 9999999999999998877 7654 557778899999999999999899999999999999999753 4666554
Q ss_pred chhcccCCCCCChhhhhcccceEEEeeeCCC---ChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcC
Q 006916 256 LSTFIDSKSPLSLKTAKSILGALTLRQHTPD---SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQG 332 (625)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~ 332 (625)
+.... . ........+|++....+.+. .+..++|.++|+++++ ..++.+++..|||++++++|++++..
T Consensus 239 ~~~~~-~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~~~~yda~~~~~~al~~ag~-- 309 (366)
T 3td9_A 239 ADAPE-L----IEIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYG--KEPAALNALGYDAYMVLLDAIERAGS-- 309 (366)
T ss_dssp GCSTH-H----HHHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTS--
T ss_pred cCCHH-H----HHHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCCchhHHHHHHHHHHHHHHHHHhCC--
Confidence 32210 0 02234567888877765443 6788999999999987 45788899999999999999999632
Q ss_pred CcccccCCCccCCCCCCccccCcccccCchHHHHHHHHhcc-cccceeeEEEccCCCccCCcEEEEEEeeCceeEEEeEe
Q 006916 333 NTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN-MTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYW 411 (625)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~-f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~vG~w 411 (625)
.++..+.++|++++ |+|++|++.||++|++. ..+.|++++++.+ +.|+.|
T Consensus 310 ---------------------------~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~-~~v~~~ 360 (366)
T 3td9_A 310 ---------------------------FDREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSV-DFEAVI 360 (366)
T ss_dssp ---------------------------CCHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEE-EEEEEE
T ss_pred ---------------------------CCHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEE-EEEEec
Confidence 15899999999998 99999999999999875 5589999985554 999999
Q ss_pred eCC
Q 006916 412 SNY 414 (625)
Q Consensus 412 ~~~ 414 (625)
++.
T Consensus 361 ~~~ 363 (366)
T 3td9_A 361 NPD 363 (366)
T ss_dssp CGG
T ss_pred Chh
Confidence 774
No 23
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=3.9e-37 Score=317.04 Aligned_cols=333 Identities=15% Similarity=0.146 Sum_probs=285.2
Q ss_pred CceEEEEEEeecCCC---C-chhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 006916 24 PEVLNVGAIFSFGTV---N-GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGP 98 (625)
Q Consensus 24 ~~~i~IG~l~~~~~~---~-g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~-~~v~aviG~ 98 (625)
.++|+||+++|++.. . |.....|+++|++++ +++++ |++++++++|+++++..+.+.+++++. ++|.+||||
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi~-G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKVN-GKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEET-TEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 468999999999743 3 677899999999999 45664 899999999999999999999999998 799999999
Q ss_pred CChHHHHHHHHhhhcCCCcEEeeccCCCCCCC-CCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHH
Q 006916 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (625)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~ 177 (625)
.+|..+.++++++...++|+|+++++++.+++ ..+|++||+.|++..++.++++++.++||++|++|+.++++|....+
T Consensus 79 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 158 (375)
T 3i09_A 79 TNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK 158 (375)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999999888888877 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcch
Q 006916 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257 (625)
Q Consensus 178 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 257 (625)
.+++.+++.|++++..+.++.+ ..++...+.+++++++++|++.+....+..++++++++|+..+. .++..+.+.
T Consensus 159 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~ 233 (375)
T 3i09_A 159 NTADVVKANGGKVLGEVRHPLS----ASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFI 233 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCH
T ss_pred HHHHHHHHcCCEEeeeeeCCCC----CccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccch
Confidence 9999999999999888777765 56788899999999999999999998999999999999987765 444444333
Q ss_pred hcccCCCCCChhhhhcccceEEEeeeCCC-ChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCccc
Q 006916 258 TFIDSKSPLSLKTAKSILGALTLRQHTPD-SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTIS 336 (625)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~ 336 (625)
.... .......+|++...++.++ .+..++|.++|+++++ ..++.+++.+|||++++++|++++...
T Consensus 234 ~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~a~~~Yda~~~~~~Al~~ag~~----- 300 (375)
T 3i09_A 234 NDVH------ALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMK--KMPSSLQAADYSSVTTYLKAVQAAGST----- 300 (375)
T ss_dssp HHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTSC-----
T ss_pred hhHh------hhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHC--CCCcHHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 2211 1112457788776665443 6788999999999987 567788999999999999999997321
Q ss_pred ccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeC
Q 006916 337 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEH 402 (625)
Q Consensus 337 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~ 402 (625)
++..|.++|++++|+|++|.+.|+++|++. ..+.|++++..
T Consensus 301 ------------------------~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~ 341 (375)
T 3i09_A 301 ------------------------DSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKP 341 (375)
T ss_dssp ------------------------CHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCG
T ss_pred ------------------------CHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEecc
Confidence 589999999999999999999999999875 56778888743
No 24
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=5.9e-37 Score=313.67 Aligned_cols=344 Identities=15% Similarity=0.127 Sum_probs=288.6
Q ss_pred CceEEEEEEeecCCC---CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH-hcCcEEEEcCC
Q 006916 24 PEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM-ETDTLAIVGPQ 99 (625)
Q Consensus 24 ~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~-~~~v~aviG~~ 99 (625)
.++++||+++|++.. .|.....|+++|++++|++++++ |+++++++.|+++++..+.+.+.+++ +++|.+||||.
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 80 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDF 80 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCC
Confidence 468999999999743 46778999999999999999997 99999999999999999999999999 67999999999
Q ss_pred ChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHH
Q 006916 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179 (625)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l 179 (625)
++..+.++++++...++|+|++.++++.+++.. |++||+.|++..++.++++++.+.||++|++|+.++.+|....+.+
T Consensus 81 ~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 159 (358)
T 3hut_A 81 SSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAF 159 (358)
T ss_dssp SHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHH
Confidence 999999999999999999999888887777644 9999999999999999999998889999999999999999999999
Q ss_pred HHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhc
Q 006916 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTF 259 (625)
Q Consensus 180 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~ 259 (625)
++.+++.|+++.....++.. ..++...++++++.++++|++.++...+..+++++++.|+..+ |+..+.+...
T Consensus 160 ~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~~~~~~~~~~ 232 (358)
T 3hut_A 160 RKAFELRGGAVVVNEEVPPG----NRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---VYGSSALYSP 232 (358)
T ss_dssp HHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---EEECGGGCSH
T ss_pred HHHHHHcCCEEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---EEecCcccCH
Confidence 99999999999877777654 4567778888988899999999999899999999999998543 6665543221
Q ss_pred ccCCCCCChhhhhcccceEEEeeeCC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCcccc
Q 006916 260 IDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 337 (625)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~ 337 (625)
... .......+|++...++.+ ..+..++|.++|+++++ ..++.+++.+|||++++++|++++...
T Consensus 233 -~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~yda~~~~~~al~~ag~~------ 299 (358)
T 3hut_A 233 -KFI----DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYG--AIPTLFAAHGYDAVGIMLAAVGRAGPE------ 299 (358)
T ss_dssp -HHH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHCTT------
T ss_pred -HHH----HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHhCCC------
Confidence 000 223356788888776654 46789999999999987 467889999999999999999996321
Q ss_pred cCCCccCCCCCCccccCcccccCchHH-HHHHHHhc-ccccceeeEEEccCCCccCCcEEEEEEeeCceeEEEeEeeC
Q 006916 338 SNDTKLNGLGGGTLNLGALSIFDGGKK-FLANILQT-NMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSN 413 (625)
Q Consensus 338 ~~~~~~~~~~~~~~~c~~~~~~~~~~~-l~~~l~~~-~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~vG~w~~ 413 (625)
++.+ +.++|+++ .|+|++|+++||++|++....+.|++++ ++.|+.+..+.+
T Consensus 300 -----------------------~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~-~G~~~~~~~~~~ 353 (358)
T 3hut_A 300 -----------------------VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVR-EGDFRVIDREGH 353 (358)
T ss_dssp -----------------------CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEE-TTEEEEC-----
T ss_pred -----------------------ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEE-CCEEEEeccccc
Confidence 4677 99999999 8999999999999998756788999997 444477765544
No 25
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=5e-37 Score=317.97 Aligned_cols=350 Identities=15% Similarity=0.168 Sum_probs=286.8
Q ss_pred CceEEEEEEeecCCC---CchhHHHHHHHHHHHHhcCCCCC-CCc--EEEEEEecCCCChHHHHHHHHHHH-hcCcEEEE
Q 006916 24 PEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVL-GGR--KLSITMHDAKFNGFLSIMGALQFM-ETDTLAIV 96 (625)
Q Consensus 24 ~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~~~~iL-~g~--~l~~~~~D~~~~~~~a~~~~~~l~-~~~v~avi 96 (625)
.++|+||+++|++.. .|.....|+++|+++||+++|++ +|+ +|+++++|+++++..+.+.+.+++ +++|.+||
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 468999999999854 46678999999999999999985 699 999999999999999999999999 67999999
Q ss_pred cCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHH-cCCcEEEEEEe-cCCCCcc
Q 006916 97 GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFN-DDDQGRN 174 (625)
Q Consensus 97 G~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~-~~W~~v~ii~~-d~~~g~~ 174 (625)
| .+|..+.++++++...++|+|++.++++ +. .+|++||+.|++..++.++++++.+ +||++|++|+. ++++|..
T Consensus 82 G-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~ 157 (391)
T 3eaf_A 82 G-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRS 157 (391)
T ss_dssp E-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHT
T ss_pred E-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHH
Confidence 9 6888899999999999999999766544 33 5799999999999999999999877 79999999999 9999999
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHH--HhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK--VRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~--i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
..+.+++.+++.|++++....++.+ ..++...+++ +++.++++|++.+....+..++++++++|+..+ ++.
T Consensus 158 ~~~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~~---~~~ 230 (391)
T 3eaf_A 158 PIGAIKKAAPSLGLQVVGDYDLPLR----ATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDAF---LLT 230 (391)
T ss_dssp THHHHHHHTGGGTEEEEEEEECCTT----CCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCCE---EEE
T ss_pred HHHHHHHHHHHcCCceeeeeccCCC----CcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCce---EEE
Confidence 9999999999999999988878765 6689999999 999999999999998999999999999998542 454
Q ss_pred eCcchhcccCCCCCChhhhhcccc-eEEEeeeC-----CCChhHHHHHHHHHhhcC-CCCCCCchhhhHhHHHHHHHHHH
Q 006916 253 TTWLSTFIDSKSPLSLKTAKSILG-ALTLRQHT-----PDSKRRRDFVSRWNTLSN-GSIGLNPYGLYAYDTVWMIARAL 325 (625)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~~YDAv~~la~Al 325 (625)
.++.... .. ........+| ++...++. ...+. .+|.++|+++++ .....+.+++.+|||++++++|+
T Consensus 231 ~~~~~~~-~~----~~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~p~~~~~~~~~yda~~~l~~Al 304 (391)
T 3eaf_A 231 NVWGFDE-RS----PQLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGVSEDQINLRVVQGFVNVWLLIKAI 304 (391)
T ss_dssp CGGGCST-TH----HHHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred eccCCCH-HH----HHhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCCCCcccccHHHHHHHHHHHHHHHH
Confidence 4332111 11 0223356788 77666554 23444 679999999987 22223578899999999999999
Q ss_pred HHHHhcCCcccccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccc--ccee-eEEEccCCCccCCcEEEEEEeeC
Q 006916 326 KLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMT--GLSG-PIHFNQDRSLLHPSYDIINVIEH 402 (625)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~--g~tG-~v~Fd~~G~r~~~~~~I~~~~~~ 402 (625)
+++...+.. ..++..+.++|++..|+ |++| ++.||++|++....+.|.++..+
T Consensus 305 ~~a~~~g~~------------------------~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~ 360 (391)
T 3eaf_A 305 ESVTSQDLQ------------------------ERGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGEN 360 (391)
T ss_dssp TTSCHHHHH------------------------HHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTT
T ss_pred HHHHhcCCC------------------------CCCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecC
Confidence 886211100 01589999999998898 9999 99999877667888999999445
Q ss_pred ceeEEEeEeeCC
Q 006916 403 GYPQQIGYWSNY 414 (625)
Q Consensus 403 ~~~~~vG~w~~~ 414 (625)
|.++.++.|...
T Consensus 361 G~~~~v~~~~~~ 372 (391)
T 3eaf_A 361 GELQLMGKFEAP 372 (391)
T ss_dssp SSEEEEEEECCC
T ss_pred CEEEEeeeecCc
Confidence 555999999654
No 26
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=5.5e-37 Score=316.36 Aligned_cols=336 Identities=13% Similarity=0.108 Sum_probs=283.1
Q ss_pred CCceEEEEEEeecCCC---C-chhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEc
Q 006916 23 KPEVLNVGAIFSFGTV---N-GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVG 97 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~-g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~-~~v~aviG 97 (625)
..++|+||+++|++.. . |.....|+++|++++ +++++ |++|+++++|+++++..+.+.+.++++ ++|.+|||
T Consensus 3 ~~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi~-G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG 79 (379)
T 3n0w_A 3 STGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKAL-GQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFD 79 (379)
T ss_dssp ---CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEET-TEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCcEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEc
Confidence 3578999999999743 3 677899999999999 35664 899999999999999999999999998 79999999
Q ss_pred CCChHHHHHHHHhhhcCCCcEEeeccCCCCCCC-CCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchH
Q 006916 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 176 (625)
Q Consensus 98 ~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~ 176 (625)
|.+|..+.++++++...++|+|+++++++.+++ ..+|++||+.|++..++.++++++.++||++|++|++|+++|....
T Consensus 80 ~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~ 159 (379)
T 3n0w_A 80 VVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMN 159 (379)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHH
Confidence 999999999999999999999999888888887 4689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcc
Q 006916 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (625)
Q Consensus 177 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (625)
+.+++.+++.|++++..+.++.+ ..++...+++++++++++|++.+...++..++++++++|+..+.+.+....++
T Consensus 160 ~~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 235 (379)
T 3n0w_A 160 AAIRRELTAGGGQIVGSVRFPFE----TQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQKVGGMIDI 235 (379)
T ss_dssp HHHHHHHHHHTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSCEEECCBCC
T ss_pred HHHHHHHHHcCCEEEEEEeCCCC----CCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCcEEEecccc
Confidence 99999999999999988878765 45788899999999999999999989999999999999987654333332222
Q ss_pred hhcccCCCCCChhhhhcccceEEEeeeCCC-ChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCcc
Q 006916 257 STFIDSKSPLSLKTAKSILGALTLRQHTPD-SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTI 335 (625)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~ 335 (625)
..... .......+|++...++.++ .+..++|.++|+++++ ..++.+++..|||++++++|++++..
T Consensus 236 ~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~~~~Yda~~~~~~Al~~ag~----- 302 (379)
T 3n0w_A 236 LTDVK------SAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMG--KMPTNNQAGGYSAALQYLKAVNAIGS----- 302 (379)
T ss_dssp HHHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred hHHHH------hhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHC--CCCChHHHHHHHHHHHHHHHHHHhCC-----
Confidence 22111 1112457788776665443 6788999999999987 46788899999999999999999732
Q ss_pred cccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceee-EEEccCCCccCCcEEEEEEeeCc
Q 006916 336 SFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGP-IHFNQDRSLLHPSYDIINVIEHG 403 (625)
Q Consensus 336 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~-v~Fd~~G~r~~~~~~I~~~~~~~ 403 (625)
.++..|.++|++++|+++.|. +.|+++|++ ...+.|++++.+.
T Consensus 303 ------------------------~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~-~~~~~i~~~~~~~ 346 (379)
T 3n0w_A 303 ------------------------KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRL-VRDMYLVRAKKPE 346 (379)
T ss_dssp ------------------------CCHHHHHHHHTTCCBCSSSCCSBEECTTSBE-ECCEEEEEECCGG
T ss_pred ------------------------CCHHHHHHHHhcCCccccCCCceeECCCCCc-ccceEEEEEEchh
Confidence 158999999999999999886 999999986 4678888887543
No 27
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=4.3e-37 Score=318.76 Aligned_cols=350 Identities=11% Similarity=0.017 Sum_probs=289.9
Q ss_pred CCceEEEEEEeecCCC---CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 006916 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 98 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~-~v~aviG~ 98 (625)
+.++|+||+++|++.. .|.....|+++|+++||+++|++ |+++++++.|+++++..+.+.+.+++.+ +|.+|||
T Consensus 4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig- 81 (392)
T 3lkb_A 4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS- 81 (392)
T ss_dssp CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-
T ss_pred cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-
Confidence 4579999999999754 46678999999999999999997 8999999999999999999999999997 9999999
Q ss_pred CChHHHHHHHHhhhcCCCcEEeeccCCCCCCC-CCCCceEEccCchHHHHHHHHHHHHH-cCCcEEEEEEecCCCCcchH
Q 006916 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFNDDDQGRNGV 176 (625)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~al~~ll~~-~~W~~v~ii~~d~~~g~~~~ 176 (625)
.+|..+.++++++...++|+|+++++++ +.+ ..++++||+.|++..++.++++++.+ +||++|++|+.++++|....
T Consensus 82 ~~s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~ 160 (392)
T 3lkb_A 82 YATGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPV 160 (392)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTH
T ss_pred CCcHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHH
Confidence 6888889999999999999999765444 444 56899999999999999999999877 69999999999999999999
Q ss_pred HHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcc
Q 006916 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (625)
Q Consensus 177 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (625)
+.+++.+++.|+++.....++.. ..++...++++++.++++|++.+....+..++++++++|+.. .|+.++++
T Consensus 161 ~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~ 233 (392)
T 3lkb_A 161 EDARKAARELGLQIVDVQEVGSG----NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKM---RHLGAHYT 233 (392)
T ss_dssp HHHHHHHHHHTCEEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---EEEECGGG
T ss_pred HHHHHHHHHcCCeEEEEEeeCCC----CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---eEEEecCc
Confidence 99999999999999887777754 557788899999999999999999999999999999999754 35655433
Q ss_pred hhcccCCCCCChhhhhcccceEEEeeeCC--CChhHHHHHHHHHhhcCCCCCCC----chhhhHhHHHHHHHHHHHHHHh
Q 006916 257 STFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLN----PYGLYAYDTVWMIARALKLFLD 330 (625)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~----~~~~~~YDAv~~la~Al~~~~~ 330 (625)
... ... .......+|++....+.+ ..+..++|.++|+++++. .+. .++...|||++++++|++++..
T Consensus 234 ~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--~p~~~~~~~~~~~yda~~~~~~al~~ag~ 306 (392)
T 3lkb_A 234 GGP-DLI----ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGR--PENFIESVNYTNGMLAAAIAVEAIRRAQE 306 (392)
T ss_dssp CSH-HHH----HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTC--CHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccH-HHH----HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCC--CcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 211 110 223356788887776533 245678999999999873 333 2378899999999999999865
Q ss_pred cCCcccccCCCccCCCCCCccccCcccccCchHHHHHHHHhcc----cc-------cceeeEEEccCCCccCCcEEEEEE
Q 006916 331 QGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN----MT-------GLSGPIHFNQDRSLLHPSYDIINV 399 (625)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~----f~-------g~tG~v~Fd~~G~r~~~~~~I~~~ 399 (625)
.+. ..++.++.++|++++ |+ |++|++.|+++|++....+.|+++
T Consensus 307 ~~~-------------------------~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~ 361 (392)
T 3lkb_A 307 RFK-------------------------RITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEA 361 (392)
T ss_dssp HHS-------------------------SCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEE
T ss_pred cCC-------------------------CCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEE
Confidence 211 115899999999997 98 999999999998876778899999
Q ss_pred eeCceeEEEeEeeCCC
Q 006916 400 IEHGYPQQIGYWSNYS 415 (625)
Q Consensus 400 ~~~~~~~~vG~w~~~~ 415 (625)
+++.+ +.|+.|....
T Consensus 362 ~~g~~-~~v~~w~~~~ 376 (392)
T 3lkb_A 362 KGGRF-VPVTEPFTSA 376 (392)
T ss_dssp ETTEE-EECSCCBCCH
T ss_pred eCCEE-EEeccccchh
Confidence 76555 9999997654
No 28
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=1.8e-36 Score=309.29 Aligned_cols=336 Identities=17% Similarity=0.214 Sum_probs=269.2
Q ss_pred CCceEEEEEEeecCCC---CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 006916 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 98 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~-~v~aviG~ 98 (625)
.+++|+||+++|++.. .|.....|+++|+++||+++|++ |++|+++++|++++|..+++.+.+|+.+ ++.+++||
T Consensus 4 ~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g~ 82 (353)
T 4gnr_A 4 EEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGP 82 (353)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECC
T ss_pred CCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEecc
Confidence 5679999999999854 47788999999999999999996 9999999999999999999999999976 78999999
Q ss_pred CChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCC-cEEEEEEec-CCCCcchH
Q 006916 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGW-GEVIAIFND-DDQGRNGV 176 (625)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W-~~v~ii~~d-~~~g~~~~ 176 (625)
.+|..+.++++++...++|+|+++++++.+++. ++|+||+.|++..++.++++++.+.+| +++++++.+ ++||....
T Consensus 83 ~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 161 (353)
T 4gnr_A 83 ATSGATAAAVANATKAGVPLISPSATQDGLTKG-QDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGIA 161 (353)
T ss_dssp CSHHHHHHHHHHHHHTTCCEEESSCCCTTTTTT-CTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHHH
T ss_pred ccCcccceehhhhhccCcceEeecccccccccC-CccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHHH
Confidence 999999999999999999999999888888753 578999999999999999999877554 555555544 34776655
Q ss_pred HHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcc
Q 006916 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (625)
Q Consensus 177 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (625)
+.+.+ +.|++++..+.++.+ ..|+..++.+++++++++|++.+...++..++++++++|+..+ ++..+.+
T Consensus 162 ~~~~~---~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~ 231 (353)
T 4gnr_A 162 KSFRE---SYKGEIVADETFVAG----DTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDGF 231 (353)
T ss_dssp HHHHH---HCCSEEEEEEEECTT----CCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGGG
T ss_pred HHHHH---HcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEeccc
Confidence 55543 457899888888876 5689999999999999999999999999999999999998653 4444433
Q ss_pred hhcccCCCCCChhhhhcccceEEEeeeCC---CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCC
Q 006916 257 STFIDSKSPLSLKTAKSILGALTLRQHTP---DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGN 333 (625)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~ 333 (625)
...... .........|.+....+.+ ..+..++|.++|+++++ ..++.+++.+|||++++++|+++..
T Consensus 232 ~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~a~~~Yda~~~la~Ai~~a~---- 301 (353)
T 4gnr_A 232 NGEEFV----QQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYN--EEPSTFAALAYDSVHLVANAAKGAK---- 301 (353)
T ss_dssp CSHHHH----HHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHTTCS----
T ss_pred ccchhh----hhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHHHHHHhcCC----
Confidence 211000 0111345666666554433 35778999999999997 5678889999999999999986520
Q ss_pred cccccCCCccCCCCCCccccCcccccCchHHHHHHHHhc-ccccceeeEEEccCCCccCCcEEEEEEeeCceeEEEe
Q 006916 334 TISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIG 409 (625)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~-~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~vG 409 (625)
++..+.++|+++ .|+|++|+++||++|++. ..+.|++++++.+ +.+.
T Consensus 302 ---------------------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~Gk~-~~~~ 349 (353)
T 4gnr_A 302 ---------------------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNNGKV-EAAE 349 (353)
T ss_dssp ---------------------------SHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEETTEE-EEEE
T ss_pred ---------------------------CHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEECCEE-EEEE
Confidence 478899999988 499999999999999864 5667888864433 5554
No 29
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=2.1e-36 Score=311.70 Aligned_cols=345 Identities=11% Similarity=0.138 Sum_probs=290.2
Q ss_pred CCCceEEEEEEeecCCC---CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 006916 22 LKPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 97 (625)
Q Consensus 22 ~~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~-~v~aviG 97 (625)
+..++++||+++|++.. .|.....++++|++++| ++ ++|+++++++.|+++++..+.+.+.+++.+ +|.+|||
T Consensus 12 a~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~-~~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 88 (375)
T 4evq_A 12 AQAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GK-LGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIG 88 (375)
T ss_dssp ---CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TE-ETTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEE
T ss_pred hhCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CC-cCCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEc
Confidence 45679999999999743 46678999999999998 44 479999999999999999999999999985 9999999
Q ss_pred CCChHHHHHHHHhhhcCCCcEEeeccCCCCCCC-CCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchH
Q 006916 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 176 (625)
Q Consensus 98 ~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~ 176 (625)
+.++..+.++++++...++|+|++.++++.+++ ..+|++||+.|++..++.++++++.++||++|++|+.++.+|....
T Consensus 89 ~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~ 168 (375)
T 4evq_A 89 TVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMV 168 (375)
T ss_dssp CSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHH
Confidence 999999999999999999999999888887777 3589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcc
Q 006916 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (625)
Q Consensus 177 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (625)
+.+++.+++.|+++.....++.. ..++...++++++.++++|++.+....+..+++++++.|+..+ |+.++ +
T Consensus 169 ~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~~~~~-~ 240 (375)
T 4evq_A 169 SGFKKSFTAGKGEVVKDITIAFP----DVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---LWGPG-F 240 (375)
T ss_dssp HHHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---EEEEG-G
T ss_pred HHHHHHHHHcCCeEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEecC-c
Confidence 99999999999999877777654 4567788889988899999998899999999999999997633 45443 2
Q ss_pred hhcccCCCCCChhhhhcccceEEEeeeCC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCc
Q 006916 257 STFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (625)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~ 334 (625)
... ... .......+|++...++.+ ..+..++|.++|+++++ ..++.+++..|||++++++|++++...
T Consensus 241 ~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~yda~~~~~~al~~~g~~--- 310 (375)
T 4evq_A 241 LTD-GVE----AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYK--IPPDVFAVQGWDAGQLLDAGVKAVGGD--- 310 (375)
T ss_dssp GTT-TTH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred CCH-HHH----HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHC--CCCcHHHHHHHHHHHHHHHHHHHhCCC---
Confidence 111 110 233456788888776654 45889999999999987 467788999999999999999985321
Q ss_pred ccccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeCceeEEEeEeeC
Q 006916 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSN 413 (625)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~vG~w~~ 413 (625)
+.++..|.++|++++|+|++|++.||++|++ ...+.|++++++.+ +.|+.+-.
T Consensus 311 ------------------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~-~~~~~i~~~~~g~~-~~v~~~~~ 363 (375)
T 4evq_A 311 ------------------------VAKRKELNAAMAAASFASPRGPFKLSAAHNP-VQNFYLRELKGGKS-VNLGLAAP 363 (375)
T ss_dssp ------------------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCB-CCCEEEEEEETTEE-EEEEEEEC
T ss_pred ------------------------CCCHHHHHHHHhcCCcccCCcceeECCCCCc-cccEEEEEEECCCc-EEeeehhh
Confidence 1258999999999999999999999999986 46899999986655 99998754
No 30
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=1e-36 Score=312.52 Aligned_cols=344 Identities=10% Similarity=0.101 Sum_probs=286.7
Q ss_pred CceEEEEEEeecCC---CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCC
Q 006916 24 PEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQ 99 (625)
Q Consensus 24 ~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~-~v~aviG~~ 99 (625)
+++|+||+++|++. ..|.....|+++|++++|+++|++ |+++++++.|+++++..+.+.+.+++.+ +|.+||||.
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~ 81 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGIN-GETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVV 81 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 57899999999974 346678899999999999999986 8999999999999999999999999986 999999999
Q ss_pred ChHHHHHHHH--hhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHH
Q 006916 100 SAVMAHVLSH--LANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (625)
Q Consensus 100 ~s~~~~~va~--~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~ 177 (625)
+|..+.++++ ++...++|+|++.++++.+++ +|++||+.|++..++.++++++.++||++|++|+.++++|....+
T Consensus 82 ~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~ 159 (364)
T 3lop_A 82 GTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAIT 159 (364)
T ss_dssp CHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHH
T ss_pred CCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHH
Confidence 9999999999 999999999998887776666 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcch
Q 006916 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257 (625)
Q Consensus 178 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 257 (625)
.+++.+++.|+++.....++.. ..++...++++++.++++|++++....+..++++++++|+..+ |+..+.+.
T Consensus 160 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~~ 232 (364)
T 3lop_A 160 GVERTLKAHALAITAMASYPRN----TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSID 232 (364)
T ss_dssp HHHHHHHTTTCCCSEEEEECTT----SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTSC
T ss_pred HHHHHHHHcCCcEEEEEEecCC----CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccCC
Confidence 9999999999998877777654 5577888999999999999999999999999999999998653 56655432
Q ss_pred hcccCCCCCChhhh-hcccceEEEeee----CCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcC
Q 006916 258 TFIDSKSPLSLKTA-KSILGALTLRQH----TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQG 332 (625)
Q Consensus 258 ~~~~~~~~~~~~~~-~~~~g~~~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~ 332 (625)
..... .... ...+|++..... ....+..++|.++|+++++....++.++..+|||+++++.|++++..+
T Consensus 233 ~~~~~-----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~p~~~a~~~yda~~~~~~al~~ag~~- 306 (364)
T 3lop_A 233 PGILQ-----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDVDLSFRAVEGFVAAKVLAEAIRRAGPK- 306 (364)
T ss_dssp HHHHH-----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHCSS-
T ss_pred hHHHH-----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHhCCC-
Confidence 21100 1223 457787766522 246788999999999988743367888999999999999999996211
Q ss_pred CcccccCCCccCCCCCCccccCcccccCchHHHHHHHHhc-cccc-ceeeEEEccCCCccCCcEEEEEEeeCceeEEEeE
Q 006916 333 NTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTG-LSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGY 410 (625)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~-~f~g-~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~vG~ 410 (625)
.++..|.++|+++ .|+| .+|+++|++++++......|.+++.++....-|+
T Consensus 307 ---------------------------~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~~~~~~ 359 (364)
T 3lop_A 307 ---------------------------PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLVIQEGH 359 (364)
T ss_dssp ---------------------------CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCEEEC--
T ss_pred ---------------------------CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCccccccc
Confidence 1589999999999 6999 9999999998876666778888876666444443
No 31
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=4.5e-37 Score=316.22 Aligned_cols=332 Identities=14% Similarity=0.103 Sum_probs=268.9
Q ss_pred CceEEEEEEeecCCC---CchhHHHHHHHHHHHHhc-CCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 006916 24 PEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINS-DPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 98 (625)
Q Consensus 24 ~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~-~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~-~v~aviG~ 98 (625)
.++|+||+++|++.. .|.....|+++|+++||+ .+++ .|++|+++++|+++++..+++.+++|+.+ +|.+||||
T Consensus 2 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~ 80 (374)
T 3n0x_A 2 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTL-DGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT 80 (374)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCc-CCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 368999999999854 467889999999999998 5666 49999999999999999999999999975 99999999
Q ss_pred CChHHHHHHHHhhhcCCCcEEeeccCCCCCCC-CCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHH
Q 006916 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (625)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~ 177 (625)
.+|..+.+++++++.+++|+|++.++++.+++ ..+||+||+.|++..+..+++.++++++| +|++|+.|++||....+
T Consensus 81 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~ 159 (374)
T 3n0x_A 81 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVA 159 (374)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHH
Confidence 99999999999999999999998777777776 45899999999999999999988888998 79999999999999999
Q ss_pred HHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCC-----ceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-----ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 178 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~-----~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
.+++.+++.|++|+..+.++.+ ..|+..++++|++++ +++|++....... .+.++.+.++...++.++.
T Consensus 160 ~~~~~~~~~G~~vv~~~~~~~~----~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~ 233 (374)
T 3n0x_A 160 AFKEALAKTGATLATEEYVPTT----TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELST 233 (374)
T ss_dssp HHHHHHTTTTCEEEEEEEECTT----CCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEE
T ss_pred HHHHHHHHcCCEEeeeecCCCC----CccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeee
Confidence 9999999999999988888765 567889999999888 9999887433221 2345555555444555554
Q ss_pred eCcchhcccCCCCCChhhhhcccceEEEeee---CCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHH
Q 006916 253 TTWLSTFIDSKSPLSLKTAKSILGALTLRQH---TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFL 329 (625)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~ 329 (625)
.+...... .......|+.+...+ .+..+..++|.++|+++++ ..++.+++..|||++++++|++++.
T Consensus 234 ~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g--~~p~~~a~~~Yda~~~l~~Al~~ag 303 (374)
T 3n0x_A 234 GGNILPAL--------AAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFN--APPDFFTAGGFSAAMAVVTAVQKAK 303 (374)
T ss_dssp CCCCTTGG--------GGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhh--------hhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHC--CCCChhHHHHHHHHHHHHHHHHHhC
Confidence 33221110 111334565555433 3456788999999999987 5678889999999999999999963
Q ss_pred hcCCcccccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeC
Q 006916 330 DQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEH 402 (625)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~ 402 (625)
. .++..|.++|++++|+|++|+++|++++++....+.|++++..
T Consensus 304 ~-----------------------------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~ 347 (374)
T 3n0x_A 304 S-----------------------------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVD 347 (374)
T ss_dssp S-----------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEECC
T ss_pred C-----------------------------CCHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEeC
Confidence 2 1589999999999999999999999654345678888888743
No 32
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=3.6e-36 Score=309.10 Aligned_cols=347 Identities=17% Similarity=0.165 Sum_probs=287.5
Q ss_pred CCceEEEEEEeecCCC---CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 006916 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGP 98 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~-~~v~aviG~ 98 (625)
+.++|+||+++|++.. .|.....|+++|++++|. ++ +|++|+++++|+++++..+.+.+.+++. ++|.+||||
T Consensus 3 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i-~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~ 79 (368)
T 4eyg_A 3 AEDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TV-AGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGF 79 (368)
T ss_dssp -CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 4579999999999754 366789999999999984 24 5999999999999999999999999998 799999999
Q ss_pred CChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHH
Q 006916 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178 (625)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~ 178 (625)
.+|..+.++++++...++|+|+++++++.+++. +|++||+.|++..++.++++++.++||++|++|+.++.+|....+.
T Consensus 80 ~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~ 158 (368)
T 4eyg_A 80 GITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAF 158 (368)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHH
Confidence 999999999999999999999998877766655 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchh
Q 006916 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258 (625)
Q Consensus 179 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 258 (625)
+++.+++.|+++.....++.. ..++...++++++.++++|++.+....+..+++++++.|+..++..|+.++++..
T Consensus 159 ~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~ 234 (368)
T 4eyg_A 159 FKERFTAGGGEIVEEIKVPLA----NPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMD 234 (368)
T ss_dssp HHHHHHHTTCEEEEEEEECSS----SCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTC
T ss_pred HHHHHHHcCCEEEEEEeCCCC----CCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccC
Confidence 999999999999888777755 4577888999998899999998888899999999999998765577887764322
Q ss_pred cccCCCCCChhhhhcccceEEEeeeCC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCccc
Q 006916 259 FIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTIS 336 (625)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~ 336 (625)
.... .......+|++...++.+ ..+..++|.++| ++++. ..++.+++.+|||++++++|++++..+
T Consensus 235 ~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~-~~p~~~~~~~yda~~~~~~al~~~g~~----- 302 (368)
T 4eyg_A 235 DDLL-----NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFG-QRPGFMAVGGYDGIHLVFEALKKTGGK----- 302 (368)
T ss_dssp HHHH-----TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHS-SCCCHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred HHHH-----HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCC-CCCChHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 1111 112245678877766543 458899999999 88732 367888999999999999999996311
Q ss_pred ccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEc-cCCCccCCcEEEEEEe-eCcee--EEEeEee
Q 006916 337 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFN-QDRSLLHPSYDIINVI-EHGYP--QQIGYWS 412 (625)
Q Consensus 337 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd-~~G~r~~~~~~I~~~~-~~~~~--~~vG~w~ 412 (625)
. ++.+|.++|++++|+|++|++.|| ++|+ ....+.|.+++ .++.+ +.++.|.
T Consensus 303 ----------------------~-~~~~l~~al~~~~~~g~~G~i~f~~~~~~-~~~~~~i~~~~~~~G~~~~v~~~~~~ 358 (368)
T 4eyg_A 303 ----------------------A-DGDSLIAAMKGMKWESPRGPISIDPETRD-IVQNIYIRKVEKVDGELYNIEFAKFD 358 (368)
T ss_dssp ----------------------C-SHHHHHHHHTTCEEEETTEEEEECTTTCC-EEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ----------------------C-CHHHHHHHHHcCCcccCCCCeEECcccCC-cccceEEEEEEecCCeEEEEEeeccc
Confidence 1 589999999999999999999999 6776 45777888887 23433 4455554
Q ss_pred C
Q 006916 413 N 413 (625)
Q Consensus 413 ~ 413 (625)
+
T Consensus 359 ~ 359 (368)
T 4eyg_A 359 A 359 (368)
T ss_dssp E
T ss_pred c
Confidence 4
No 33
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=2.7e-33 Score=289.33 Aligned_cols=348 Identities=14% Similarity=0.060 Sum_probs=277.4
Q ss_pred CCceEEEEEEeecCCC---CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 006916 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGP 98 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~-~~v~aviG~ 98 (625)
.+++++||+++|++.. .+.....++++|++++|+++|++ |+++++++.|+++++..+.+.+.+++. ++|.+|||+
T Consensus 4 ~~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 82 (385)
T 1pea_A 4 HQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGC 82 (385)
T ss_dssp ----CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECC
Confidence 3568999999998643 46677899999999999999986 899999999999999999999999996 799999999
Q ss_pred CChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHH
Q 006916 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178 (625)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~ 178 (625)
.++..+.++.+++...++|+|++.+... ...++++||+.+++..++.++++++.+.+|++|++|+.++.++....+.
T Consensus 83 ~~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 159 (385)
T 1pea_A 83 YMSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHV 159 (385)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHH
Confidence 9888888889999999999998765421 1236889999999999999999999999999999999988888888999
Q ss_pred HHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchh
Q 006916 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258 (625)
Q Consensus 179 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 258 (625)
+++.+++.|+++.....++.. ....++...++++++.++++|++.+....+..+++++++.|+......++..++...
T Consensus 160 ~~~~l~~~G~~v~~~~~~~~~--~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~ 237 (385)
T 1pea_A 160 MRHLYRQHGGTVLEEIYIPLY--PSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEA 237 (385)
T ss_dssp HHHHHHHTTCEEEEEEEECSS--CCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESSCCHH
T ss_pred HHHHHHHcCCEEEEEEeecCC--CCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecccchH
Confidence 999999999998866556541 237788899999988889999998877889999999999998654444554443221
Q ss_pred cccCCCCCChhhhhcccceEEEeeeC--CCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCccc
Q 006916 259 FIDSKSPLSLKTAKSILGALTLRQHT--PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTIS 336 (625)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~ 336 (625)
.+.. ......+|++...++. ...+..++|.++|+++++....++.+++.+|||++++++|++++...
T Consensus 238 ~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~~~~~~~~~~yda~~~~~~Al~~ag~~----- 306 (385)
T 1pea_A 238 EVAK------MESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNW----- 306 (385)
T ss_dssp HHTT------SCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTCCCCHHHHHHHHHHHHHHHHHHHHTSC-----
T ss_pred HHHh------cCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 1111 1113567887776554 34678899999999988743356778999999999999999996311
Q ss_pred ccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeCceeEEEeEe
Q 006916 337 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYW 411 (625)
Q Consensus 337 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~vG~w 411 (625)
++..+.++|++++|+|++|.++||+++++....+.|.++..++.++.|...
T Consensus 307 ------------------------~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 307 ------------------------RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp ------------------------CHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred ------------------------CHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 589999999999999999999999965445567788888434444766544
No 34
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=9.6e-35 Score=300.54 Aligned_cols=343 Identities=15% Similarity=0.201 Sum_probs=276.8
Q ss_pred CCCceEEEEEEeecCCC---CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 006916 22 LKPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 97 (625)
Q Consensus 22 ~~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~-~v~aviG 97 (625)
...++|+||+++|++.. .|.....++++|+++|| |+++++++.|+++++..+.+.+.+++++ +|.+|||
T Consensus 23 ~a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 95 (386)
T 3sg0_A 23 AAQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIG 95 (386)
T ss_dssp --CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred cCCCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC-------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEEC
Confidence 35679999999999754 35678899999999984 7899999999999999999999999987 8999999
Q ss_pred CCChHHHHHHHHhhhcCCCcEEeeccCCCCCC--CCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcch
Q 006916 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLS--PLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNG 175 (625)
Q Consensus 98 ~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls--~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~ 175 (625)
|.+|..+.++.+++...++|+|++.++++.++ ...++++||+.|++..++.++++++.++||++|++|+.++++|...
T Consensus 96 ~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~ 175 (386)
T 3sg0_A 96 SSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGY 175 (386)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHH
Confidence 99999999999999999999999988877776 3568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCc
Q 006916 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255 (625)
Q Consensus 176 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 255 (625)
.+.+++.+++.|+++...+.++.. ..++...++++++.++++|++.+....+..+++++++.|+..+ ++..+.
T Consensus 176 ~~~~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ 248 (386)
T 3sg0_A 176 YKVLAAAAPKLGFELTTHEVYARS----DASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQTHG 248 (386)
T ss_dssp HHHHHHHHHHHTCEECCCEEECTT----CSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EECCGG
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCC----CCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEeccc
Confidence 999999999999999876667654 4567788999999999999999988889999999999998642 455443
Q ss_pred chhcccCCCCCChhhhhcccceEEEeee------CC-CC---hhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHH
Q 006916 256 LSTFIDSKSPLSLKTAKSILGALTLRQH------TP-DS---KRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARAL 325 (625)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~-~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al 325 (625)
+... ... .......+|++....+ .+ .. +..++|.++|+++++. ..++.++...|||++++++|+
T Consensus 249 ~~~~-~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~p~~~~~~~yda~~~~~~al 322 (386)
T 3sg0_A 249 VATE-EFI----KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGG-AAPTIFGVHLWDSMTLVENAI 322 (386)
T ss_dssp GCSH-HHH----HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCH-HHH----HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCC-CCCChhHHHHHHHHHHHHHHH
Confidence 3211 110 2233567787765532 12 22 3578999999999873 246788999999999999999
Q ss_pred HHHHhcCCcccccCCCccCCCCCCccccCcccccCchHHHHHHHHhc-ccccceeeEEEccCCCc--cCCcEEEEEEeeC
Q 006916 326 KLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSL--LHPSYDIINVIEH 402 (625)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~-~f~g~tG~v~Fd~~G~r--~~~~~~I~~~~~~ 402 (625)
+++.+.... ..+.++..+.++|+++ .|+|++|++.|++++++ ....+.|++++++
T Consensus 323 ~~a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G 380 (386)
T 3sg0_A 323 PAALKAAKP----------------------GTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDG 380 (386)
T ss_dssp HHHHHHCCT----------------------TSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETT
T ss_pred HHhhhccCC----------------------CCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECC
Confidence 998654210 0022478999999999 89999999999987543 2355788888754
Q ss_pred ceeEE
Q 006916 403 GYPQQ 407 (625)
Q Consensus 403 ~~~~~ 407 (625)
.+ +.
T Consensus 381 ~~-~~ 384 (386)
T 3sg0_A 381 AF-RL 384 (386)
T ss_dssp EE-EE
T ss_pred EE-Ee
Confidence 43 44
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=5.5e-33 Score=284.66 Aligned_cols=340 Identities=16% Similarity=0.154 Sum_probs=274.1
Q ss_pred CCceEEEEEEeecCCC---CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 006916 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 98 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~-~v~aviG~ 98 (625)
..++|+||+++|++.. .|.....++++|+++|| |+++++++.|+++++..+.+.+.+++.+ +|.+|||+
T Consensus 4 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 76 (362)
T 3snr_A 4 ETNEITVGISVTTTGPAAALGIPERNALEFVVKEIS-------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGS 76 (362)
T ss_dssp CCCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC-------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcC
Confidence 4578999999999754 35677899999999984 7899999999999999999999999988 89999999
Q ss_pred CChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHH
Q 006916 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178 (625)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~ 178 (625)
.+|..+.++.+++...++|+|++.++ + +....++++||+.|++..++.++++++.++||++|++|+.++.+|....+.
T Consensus 77 ~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 154 (362)
T 3snr_A 77 SVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFND 154 (362)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHH
Confidence 99999999999999999999998766 4 334568999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchh
Q 006916 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258 (625)
Q Consensus 179 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 258 (625)
+++.+++.|+++.....++.. ..++...++++++.++++|++.+....+..+++++++.|+..+ ++....+..
T Consensus 155 ~~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g~~~ 227 (362)
T 3snr_A 155 LKKQGEAMGLKIVGEERFARP----DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IYQTHGAAS 227 (362)
T ss_dssp HHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EEECGGGCS
T ss_pred HHHHHHHcCCEEEEEeecCCC----CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EEeccCcCc
Confidence 999999999998877777654 4567778888888899999999888899999999999998653 354443321
Q ss_pred cccCCCCCChhhhhcccceEEEeee----------CCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHH
Q 006916 259 FIDSKSPLSLKTAKSILGALTLRQH----------TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLF 328 (625)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~ 328 (625)
. ... .......+|++....+ .+..+..++|.++|+++++. ..++.+++..|||++++++|++++
T Consensus 228 ~-~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~p~~~~~~~yda~~~~~~al~~a 301 (362)
T 3snr_A 228 M-DFI----RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGP-SSRSQFAGHSYDAFKVLERVVPVA 301 (362)
T ss_dssp H-HHH----HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCT-TCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHH----HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCC-CCCCchhHhHHHHHHHHHHHHHHh
Confidence 1 000 2233567787776532 12235689999999999873 256788999999999999999998
Q ss_pred HhcCCcccccCCCccCCCCCCccccCcccccCchHHHHHHHHhc-ccccceeeEEEccCCCc--cCCcEEEEEEeeCcee
Q 006916 329 LDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSL--LHPSYDIINVIEHGYP 405 (625)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~-~f~g~tG~v~Fd~~G~r--~~~~~~I~~~~~~~~~ 405 (625)
.+.... ..+.++..+.++|+++ +|+|++|+++|++++++ .+..+.|++++++.+
T Consensus 302 ~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~- 358 (362)
T 3snr_A 302 LKKAKP----------------------GTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKY- 358 (362)
T ss_dssp HHHCCT----------------------TSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEE-
T ss_pred hccccC----------------------CCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEE-
Confidence 654210 0022589999999999 89999999999987443 245678888875443
Q ss_pred EE
Q 006916 406 QQ 407 (625)
Q Consensus 406 ~~ 407 (625)
+.
T Consensus 359 ~~ 360 (362)
T 3snr_A 359 VI 360 (362)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.94 E-value=1.2e-26 Score=230.62 Aligned_cols=307 Identities=10% Similarity=0.066 Sum_probs=235.1
Q ss_pred EEEEEeecCCC---CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHH
Q 006916 28 NVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (625)
Q Consensus 28 ~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~ 104 (625)
+||+++|++.. .|...+.++++|. .|++++++++|+.+++ +...+.++++++|.+||||.+|..+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~----------~G~~i~l~~~D~~~~~--a~~~~~~l~~~~v~~IiGp~~s~~~ 69 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK----------GNSTIPVQVFDTSMNS--VQDIIAQAKQAGIKTLVGPLLKQNL 69 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH----------TTCCSCEEEEETTTSC--HHHHHHHHHHTTCCEEECCCSHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc----------cCCCceEEEEECCCCh--HHHHHHHHHHCCCCEEEeeCCHHHH
Confidence 69999999854 5788899999986 2789999999999987 5667778888899999999999999
Q ss_pred HHHHHhh-hcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHH
Q 006916 105 HVLSHLA-NELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (625)
Q Consensus 105 ~~va~~~-~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l 183 (625)
.++++++ ...++|+|++.+++. .....+.|+||+.|. .++.++++++...|.+++++|+.+++||+...+.|++.+
T Consensus 70 ~a~~~~~~~~~~vp~i~~~~~~~-~~~~~~~~~f~~~~~--~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~ 146 (325)
T 2h4a_A 70 DVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGLSPE--DEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (325)
T ss_dssp HHHHHCGGGGTTCEEEESCCCSS-CCCCTTEEECCCCHH--HHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCCcEEECCCCcc-ccCCCCeEEEECCHH--HHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHH
Confidence 9999998 789999999766532 222335677776654 468999999988999999999999999999999999999
Q ss_pred hccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcch--hccc
Q 006916 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS--TFID 261 (625)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~--~~~~ 261 (625)
++.|++|+..+.++.. .|+...+++++ .++|+|++.+...++..+.+++...+. +-..+.++.+. +. .
T Consensus 147 ~~~Gg~vv~~~~y~~~-----~d~~~~l~~i~-~~pDaV~~~~~~~~~~~i~~~~~~~g~---~~pl~~~~~~~~~s~-~ 216 (325)
T 2h4a_A 147 QQLAGTDANIRYYNLP-----ADVTYFVQENN-SNTTALYAVASPTELAEXKGYLTNIVP---NLAIYASSRASASAT-N 216 (325)
T ss_dssp HHHHSSCCEEEEESST-----THHHHHHHHST-TCCCEEEECCCHHHHHHHHHHHTTTCT---TCEEEECGGGCCHHH-H
T ss_pred HHcCCCcceeEecCCH-----HHHHHHHHhcC-CCCCEEEEeCCHHHHhhhhhhHhhcCC---CCCEEEeccccccCC-C
Confidence 9999999988888642 58999999984 789999999999888888888776543 33455555544 21 1
Q ss_pred CCCCCChhhhhcccceEEEe-ee--CCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCccccc
Q 006916 262 SKSPLSLKTAKSILGALTLR-QH--TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFS 338 (625)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~ 338 (625)
.. .......+|++... ++ .+..+.+++|.++|+..+ .+....++.|||+.++++. .++.
T Consensus 217 ~~----~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~----~~~rl~AlgyDA~~l~~~l-~~l~--------- 278 (325)
T 2h4a_A 217 TN----TDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----QLMRLYAMGADAWLLINQF-NELR--------- 278 (325)
T ss_dssp TC----HHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH----HHHHHHHHHHHHHHHHHTH-HHHH---------
T ss_pred CC----chhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc----chHHHHHHHHHHHHHHHHH-HHHh---------
Confidence 10 33446788887655 33 345567888888775432 2445578999999986553 3321
Q ss_pred CCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeCceeEEE
Q 006916 339 NDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQI 408 (625)
Q Consensus 339 ~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~v 408 (625)
.+.+..|+|+||.++||++|+ ....+.+.+++++.. +.|
T Consensus 279 -----------------------------~~~~~~~~G~tG~l~~~~~g~-~~R~l~~~~~~~G~~-~~~ 317 (325)
T 2h4a_A 279 -----------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAI-VPV 317 (325)
T ss_dssp -----------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEE-EEC
T ss_pred -----------------------------hCCCCeeccCceeEEECCCCe-EEEeechhhccCCeE-EEe
Confidence 133457999999999999997 567788888875554 554
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.94 E-value=4.7e-26 Score=229.07 Aligned_cols=311 Identities=10% Similarity=0.041 Sum_probs=230.4
Q ss_pred EEEEEEeecCCC---CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHH
Q 006916 27 LNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (625)
Q Consensus 27 i~IG~l~~~~~~---~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~ 103 (625)
+|||+++|++.. .|...+.|+++|++ |++++++++|++++|..++ ...+.+++|.+||||.+|+.
T Consensus 3 ~kIG~l~PlSG~~a~~G~~~~~g~~lA~~----------g~~i~l~~~D~~~~~~~aa--~~~~~~~~v~~iiGp~~s~~ 70 (327)
T 3ckm_A 3 SQIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQDI--IAQAKQAGIKTLVGPLLKQN 70 (327)
T ss_dssp CCEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHHH--HHHHHHTTCCEEECCCSHHH
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhCC----------CCCceEEEEeCCCCHHHHH--HHHHHHcCCeEEEEcccccc
Confidence 689999999854 47788899998863 5678899999999987653 34455679999999999988
Q ss_pred HHHHHHhh-hcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHH
Q 006916 104 AHVLSHLA-NELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDK 182 (625)
Q Consensus 104 ~~~va~~~-~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~ 182 (625)
+.+++... +...+|+++..+++. . ...+++||+.+++..++.++++++...|++++++|+.+++||+...+.|++.
T Consensus 71 ~~a~~~~~~~~~~v~~~~~~~~~~-~--~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~ 147 (327)
T 3ckm_A 71 LDVILADPAQIQGMDVLALNATPN-S--RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVR 147 (327)
T ss_dssp HHHHHHCGGGGTTCEEEESCCCTT-C--CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHH
T ss_pred chhhHHHHHhccCceEeccCcCcc-c--ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHH
Confidence 87766654 556667665433332 2 2357899999999999999999999999999999999999999999999999
Q ss_pred HhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhcccC
Q 006916 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262 (625)
Q Consensus 183 l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 262 (625)
+++.|++|+..+.++.. .. ...+.+++..++++|++.....++..+++++.+.++.. .++.++.+......
T Consensus 148 ~~~~Gg~vv~~~~~~~~----~~--~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~---~~~~~~~~~~~~~~ 218 (327)
T 3ckm_A 148 WQQLAGTDANIRYYNLP----AD--VTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNL---AIYASSRASASATN 218 (327)
T ss_dssp HHHHHSSCCEEEEESST----TH--HHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTC---EEEECGGGCCHHHH
T ss_pred HHHCCCeEEEEEECCCC----ch--hhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccC---CEEeeeccccccch
Confidence 99999999988888754 22 34566778899999999999999999999999887543 35555433221110
Q ss_pred CCCCChhhhhcccceEEEee---eCCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCcccccC
Q 006916 263 KSPLSLKTAKSILGALTLRQ---HTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (625)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~ 339 (625)
.. .......+|++.... ..+..+.+++|.++|+..++ .....++.|||+.+++++.+..
T Consensus 219 ~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~AlgyDA~~l~~~l~~~~----------- 280 (327)
T 3ckm_A 219 TN---TDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ----LMRLYAMGADAWLLINQFNELR----------- 280 (327)
T ss_dssp TC---HHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH----HHHHHHHHHHHHHHHHTHHHHH-----------
T ss_pred hc---chhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcC----CCchHHHHHHHHHHHHHHHHhc-----------
Confidence 00 122234566655443 24556788888888876653 2235678999998776543221
Q ss_pred CCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeCceeEEEe
Q 006916 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIG 409 (625)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~vG 409 (625)
.+....|.|++|.++||++|+ ....+.+.+++++.. ++|.
T Consensus 281 ----------------------------~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~~-vpv~ 320 (327)
T 3ckm_A 281 ----------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAI-VPVV 320 (327)
T ss_dssp ----------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEE-EECC
T ss_pred ----------------------------CCCCCCceeceEEEEECCCCC-CccccEEEEEECCEE-EEcc
Confidence 123346999999999999997 567778888875554 7775
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.47 E-value=2.1e-14 Score=142.96 Aligned_cols=119 Identities=24% Similarity=0.466 Sum_probs=87.3
Q ss_pred CCceEEEEecCCCCccccEEeeC------CcceeeeeeHHHHHHHHHHCCCCccEEEEeCCC---CC--C-CCCHHHHHH
Q 006916 460 NGRQLRIGVPNRVSYRDFVFKVN------GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGD---GH--K-NPTYSELIN 527 (625)
Q Consensus 460 ~~~~l~v~~~~~~~~~~~~~~~~------~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~---~~--~-~~~~~g~~~ 527 (625)
..++|+|++... +||.+.+. +++++.||++||++++++++|++ ++++.+.+ |. . +++|++++.
T Consensus 11 ~~~~l~V~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~ 85 (312)
T 1yae_A 11 SNRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFT--YEIRLVEDGKYGAQDDVNGQWNGMVR 85 (312)
T ss_dssp CSCEEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCE--EEEEECSSCCCCCBCTTTCCBCSHHH
T ss_pred cCceEEEEEecc---CCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCe--EEEEecCCCccceeccCCCcchHHHH
Confidence 467899999644 56766642 36789999999999999999999 55554322 11 1 578999999
Q ss_pred HHHcCcccEEEeeeeeecccccceEecccccccceEEEEecCC-CCcCcchhccCcc
Q 006916 528 QITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK-LNSSAWAFLRPFT 583 (625)
Q Consensus 528 ~l~~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~-~~~~~~~~l~pf~ 583 (625)
+|.+|++|++++++++|++|++.++||.||+..+.+++++++. ...+++.|+.||+
T Consensus 86 ~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~ 142 (312)
T 1yae_A 86 ELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGS 142 (312)
T ss_dssp HHHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------
T ss_pred HHhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccc
Confidence 9999999999999999999999999999999999999999876 5677889999987
No 39
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.43 E-value=9.6e-14 Score=136.61 Aligned_cols=104 Identities=18% Similarity=0.405 Sum_probs=83.5
Q ss_pred ceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCC------CC----CCHHHHHHHHHc
Q 006916 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KN----PTYSELINQITT 531 (625)
Q Consensus 462 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~------~~----~~~~g~~~~l~~ 531 (625)
++++|++. ..|+||...+. +++++|||+||++++++++|++ |+++.+.+++ .| +.|++++++|.+
T Consensus 41 ~~l~vg~~--~~~~P~~~~~~-~g~~~G~~vDll~~ia~~lg~~--~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~ 115 (292)
T 1pb7_A 41 KVICTGPN--DTSPGSPRHTV-PQCCYGFCIDLLIKLARTMNFT--YEVHLVADGKFGTQERVNNSNKKEWNGMMGELLS 115 (292)
T ss_dssp CEEEEEEC----------CEE-EEEEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCEEECTTSSCEEECHHHHHHHH
T ss_pred ceeecccC--CCCCCcccccc-ccCcceeHHHHHHHHHHHcCce--EEEEEecCCcccccccccccccCcHHHHHHHHHc
Confidence 67888884 45667766553 6789999999999999999999 7777654432 22 479999999999
Q ss_pred CcccEEEeeeeeecccccceEecccccccceEEEEecCC
Q 006916 532 GVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 532 ~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
|++|++++++++|++|++.++||.||+.++++++++++.
T Consensus 116 g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~ 154 (292)
T 1pb7_A 116 GQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT 154 (292)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC
T ss_pred CCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCc
Confidence 999999999999999999999999999999999998765
No 40
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.41 E-value=1.8e-13 Score=134.06 Aligned_cols=111 Identities=23% Similarity=0.410 Sum_probs=91.5
Q ss_pred CCCCceEEEEecCCCCccccEEeeC---CcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCC----CCCCHHHHHHHHH
Q 006916 458 PNNGRQLRIGVPNRVSYRDFVFKVN---GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH----KNPTYSELINQIT 530 (625)
Q Consensus 458 ~~~~~~l~v~~~~~~~~~~~~~~~~---~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~g~~~~l~ 530 (625)
|.++++||||++..++|++|....+ +..+++|||+||++++++++|++ |+++.+.+++ .+++|++++.+|.
T Consensus 25 ~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~ 102 (284)
T 2a5s_A 25 PLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFT--YDLYLVTNGKHGKKVNNVWNGMIGEVV 102 (284)
T ss_dssp CC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCC--EEEEECCSSSSCCEETTEECHHHHHHH
T ss_pred CCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCC--EEEEEccCCccCcccCCCHHHHHHHHh
Confidence 4578899999987777666643221 12478999999999999999998 7776654432 4578999999999
Q ss_pred cCcccEEEeeeeeecccccceEecccccccceEEEEecCC
Q 006916 531 TGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 531 ~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
+|++|++++++++|++|++.++||.||+.++.+++++++.
T Consensus 103 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~ 142 (284)
T 2a5s_A 103 YQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGT 142 (284)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTC
T ss_pred cCCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCc
Confidence 9999999999999999999999999999999999998765
No 41
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.41 E-value=2.5e-13 Score=131.26 Aligned_cols=107 Identities=21% Similarity=0.426 Sum_probs=88.3
Q ss_pred CceEEEEecCCCCccccEEeeCC------cceeeeeeHHHHHHHHHHCCCCccEEEEeCCC-CC---CCCCHHHHHHHHH
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNG------TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGD-GH---KNPTYSELINQIT 530 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~------~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~-~~---~~~~~~g~~~~l~ 530 (625)
+++|+|++... +||.+.+.. ++++.||++||++++++++|+++++..++.+. +. .+++|++++..|.
T Consensus 3 ~~~l~v~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~ 79 (259)
T 3g3k_A 3 NRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELI 79 (259)
T ss_dssp CCCEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CcEEEEEEecC---CCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHh
Confidence 57899999654 456666543 58999999999999999999994444443211 11 1468999999999
Q ss_pred cCcccEEEeeeeeecccccceEecccccccceEEEEecCC
Q 006916 531 TGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 531 ~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
+|++|++++++++|++|++.++||.||+..+..++++++.
T Consensus 80 ~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~ 119 (259)
T 3g3k_A 80 DHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT 119 (259)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS
T ss_pred cCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc
Confidence 9999999999999999999999999999999999998865
No 42
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.40 E-value=3.8e-13 Score=128.62 Aligned_cols=98 Identities=23% Similarity=0.409 Sum_probs=87.0
Q ss_pred ceEEEEecCCCCccccEEee--CCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 006916 462 RQLRIGVPNRVSYRDFVFKV--NGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (625)
Q Consensus 462 ~~l~v~~~~~~~~~~~~~~~--~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~ 539 (625)
++|+||+. +.|+||.+.+ ++++++.||++||++++++++|++ +++++. .|++++..|.+|++|++++
T Consensus 12 g~L~Vg~~--~~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~-------~~~~~~~~l~~g~~d~~~~ 80 (243)
T 4h5g_A 12 GKLVVATS--PDYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVK--LEILSM-------SFDNVLTSLQTGKADLAVA 80 (243)
T ss_dssp TEEEEEEC--CCBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSE--EEEEEC-------CGGGHHHHHHTTSCSEECS
T ss_pred CEEEEEEC--CCCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCc--eEEecc-------cHHHHHHHHHcCCCCcccc
Confidence 67999994 6788888753 467899999999999999999998 666663 3999999999999999999
Q ss_pred eeeeecccccceEecccccccceEEEEecCC
Q 006916 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
++++|++|++.++||.||+..+.++++++..
T Consensus 81 ~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~ 111 (243)
T 4h5g_A 81 GISATDERKEVFDFSIPYYENKISFLVHKAD 111 (243)
T ss_dssp SCBCCHHHHTTEEECSCSBCCCEEEEEEGGG
T ss_pred cccCChhHccEEEccCccccCcccccccccc
Confidence 9999999999999999999999999997754
No 43
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.38 E-value=2.3e-13 Score=134.08 Aligned_cols=83 Identities=28% Similarity=0.578 Sum_probs=74.2
Q ss_pred eeeeeeHHHHHHHHHHCCCCccEEEEeCCCCC----CCCCHHHHHHHHHcCcccEEEeeeeeecccccceEecccccccc
Q 006916 486 IVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH----KNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESG 561 (625)
Q Consensus 486 ~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~g~~~~l~~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~ 561 (625)
+++||++||++++++++|++ |+++.+.+++ .++.|++++++|.+|++|++++++++|++|++.++||.||+..+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~--~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~ 144 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFD--FDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTS 144 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEE--EEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEE
T ss_pred CceEEhHHHHHHHHHHcCCc--EEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcc
Confidence 47899999999999999998 7776654432 45789999999999999999999999999999999999999999
Q ss_pred eEEEEecCC
Q 006916 562 LVVVAPVRK 570 (625)
Q Consensus 562 ~~~l~~~~~ 570 (625)
.+++++++.
T Consensus 145 ~~i~~~~~~ 153 (294)
T 2rc8_A 145 LGILVRTRG 153 (294)
T ss_dssp EEEEEETTS
T ss_pred eEEEEECCC
Confidence 999998764
No 44
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.36 E-value=5.6e-13 Score=127.40 Aligned_cols=97 Identities=15% Similarity=0.285 Sum_probs=81.7
Q ss_pred CCceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHC-CCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEE
Q 006916 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 538 (625)
Q Consensus 460 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~ 538 (625)
+.++|+||+. +.|+||.+.+ .++++.||++||+++++++| |++ +++++. .|++++..|.+|++|+++
T Consensus 7 ~~~tl~vg~~--~~~pP~~~~d-~~G~~~G~~vdl~~~ia~~l~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~ 74 (243)
T 4gvo_A 7 KVQTITVGTG--TQFPNVCFLD-ENGKLTGYDVELVKEIDKRLPGYK--FKFKTM-------DFSNLLVSLGAGKVDIVA 74 (243)
T ss_dssp -CEEEEEEEC--SEETTTEEEC-TTSCEESHHHHHHHHHHHTCTTEE--EEEEEC-------CGGGHHHHHHTTSCSEEC
T ss_pred cCCeEEEEEC--CCCCCeEEEC-CCCcEEEhHHHHHHHHHHhccCCe--EEEEEC-------CHHHHHHHHHCCCCCEec
Confidence 3578999994 6788999886 36889999999999999998 888 666663 399999999999999999
Q ss_pred eeeeeecccccceEecccccccceEEEEec
Q 006916 539 GDIAIVTNRTKAVDFTQPYIESGLVVVAPV 568 (625)
Q Consensus 539 ~~~~~t~~R~~~vdfs~p~~~~~~~~l~~~ 568 (625)
+++++|++|++.++||.||+.....+++.+
T Consensus 75 ~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~ 104 (243)
T 4gvo_A 75 HQMEKSKEREKKFLFNDVAYNNFPLQLTVL 104 (243)
T ss_dssp SCCBCCHHHHHHSEECSSCCEECCEEEEEE
T ss_pred ccCCCCHHHhhhhhhhhhhcccccceEEEe
Confidence 999999999999999999877655554433
No 45
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.32 E-value=2.5e-12 Score=124.50 Aligned_cols=105 Identities=23% Similarity=0.369 Sum_probs=88.0
Q ss_pred CceEEEEecCCCCccccEEeeCC----cceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCC-----CCCCHHHHHHHHHc
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNG----TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH-----KNPTYSELINQITT 531 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~----~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~g~~~~l~~ 531 (625)
+++|+|++... +||.+.+.. .+++.||++||++++++++|++ ++++.+.++. .++.|++++.+|.+
T Consensus 2 ~~~l~v~~~~~---pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~l~~ 76 (265)
T 2v3u_A 2 GVVLRVVTVLE---EPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFN--YEIYVAPDHKYGSPQEDGTWNGLVGELVF 76 (265)
T ss_dssp CCEEEEEECCB---TTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCE--EEEEECTTCCCCCBCTTSCBCHHHHHHHT
T ss_pred CeEEEEEEecc---CCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCc--EEEEEccCCcccccCCCCCcchHHHHHHc
Confidence 68899999654 567766532 1789999999999999999998 6666533211 34679999999999
Q ss_pred CcccEEEeeeeeecccccceEecccccccceEEEEecCC
Q 006916 532 GVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 532 ~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
|++|++++++++|++|++.++||.||+..+..+++++..
T Consensus 77 g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~ 115 (265)
T 2v3u_A 77 KRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT 115 (265)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC
T ss_pred CCcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC
Confidence 999999989999999999999999999999999998765
No 46
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.30 E-value=2.8e-12 Score=124.12 Aligned_cols=105 Identities=16% Similarity=0.411 Sum_probs=87.9
Q ss_pred CceEEEEecCCCCccccEEeeCC------cceeeeeeHHHHHHHHHHCCCCccEEEEeCC-----CCCCCC-CHHHHHHH
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNG------TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG-----DGHKNP-TYSELINQ 528 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~------~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~-----~~~~~~-~~~g~~~~ 528 (625)
+++|+|++. +|+||.+.+.. ++++.||++||++++++++|++ ++++... ....++ .|++++..
T Consensus 3 ~~~l~v~~~---~~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (263)
T 1mqi_A 3 NKTVVVTTI---LESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGE 77 (263)
T ss_dssp CCCEEEEEC---CBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCBCTTTCCBCHHHHH
T ss_pred CeEEEEEEe---cCCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCce--EEEEEccccccCccCCCCCCcHHHHHH
Confidence 577999995 36778777642 4789999999999999999998 6666542 111223 69999999
Q ss_pred HHcCcccEEEeeeeeecccccceEecccccccceEEEEecCC
Q 006916 529 ITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 529 l~~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
|.+|++|++++++++|++|++.++||.||+..+..+++++..
T Consensus 78 l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~ 119 (263)
T 1mqi_A 78 LVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119 (263)
T ss_dssp HHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC
T ss_pred HHcCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc
Confidence 999999999988999999999999999999999999998765
No 47
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.25 E-value=4.9e-12 Score=119.85 Aligned_cols=98 Identities=17% Similarity=0.358 Sum_probs=85.8
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+|++. +.|+||.+.+ .++++.|+++||++++++++|++ ++++.. .|.+++..|.+|++|+++++
T Consensus 4 a~~l~v~~~--~~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 71 (232)
T 3i6v_A 4 ADTVRMGTE--GAYPPYNFIN-DAGEVDGFERELGDELCKRAGLT--CEWVKN-------DWDSIIPNLVSGNYDTIIAG 71 (232)
T ss_dssp --CEEEEEC--SEETTTEEEC-TTSCEESHHHHHHHHHHHHHTCC--EEEEEC-------CGGGHHHHHHTTSCSEECSS
T ss_pred CCEEEEEEC--CCCCCeeEEC-CCCCEeeehHHHHHHHHHHcCCc--eEEEEC-------CHHHHHHHHHCCCCCEEEeC
Confidence 467999985 5678898876 36789999999999999999999 666663 39999999999999999999
Q ss_pred eeeecccccceEecccccccceEEEEecCC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
++.|++|++.++||.||+..+..+++++..
T Consensus 72 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 101 (232)
T 3i6v_A 72 MSITDERDEVIDFTQNYIPPTASSYVATSD 101 (232)
T ss_dssp CBCCHHHHTTSEEEEEEECCCEEEEEESST
T ss_pred CcCCHHHHhhcCcccccccCCeEEEEECCC
Confidence 999999999999999999999999998754
No 48
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.18 E-value=4e-11 Score=113.86 Aligned_cols=97 Identities=23% Similarity=0.334 Sum_probs=85.7
Q ss_pred ceEEEEecCCCCccccEEe-eCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 462 RQLRIGVPNRVSYRDFVFK-VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 462 ~~l~v~~~~~~~~~~~~~~-~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
++|+||+. +.|+||.+. + .++++.|+++||++++++++|++ ++++... |..++..|.+|++|+++++
T Consensus 3 ~~l~v~~~--~~~~P~~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~~-------~~~~~~~l~~g~~D~~~~~ 70 (237)
T 3kzg_A 3 LNLTIGTS--KFNPPFEVWSG-NNSSLYGFDIDLMQEICRRLHAT--CTFEAYI-------FDDLFPALKNREVDLVIAS 70 (237)
T ss_dssp CEEEEEEE--SEETTTEECCC-TTSCCBSHHHHHHHHHHHHTTCE--EEEEEEC-------GGGHHHHHHTTSSSEECSS
T ss_pred ceEEEEEC--CCCCCeEEEeC-CCCCEeeehHHHHHHHHHHhCCc--eEEEEcC-------HHHHHHHHhCCCCCEEEEc
Confidence 67999996 457889887 5 46789999999999999999998 5555422 9999999999999999999
Q ss_pred eeeecccccceEecccccccceEEEEecCC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
++.+++|++.++||.||+..+..+++++..
T Consensus 71 ~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~ 100 (237)
T 3kzg_A 71 MIITDERKKHFIFSLPYMESNSQYITTVDS 100 (237)
T ss_dssp CBCCTTGGGTCEECCCSBCCEEEEEEETTC
T ss_pred cccChhHhccceeeeeeeecceEEEEECCC
Confidence 999999999999999999999999998765
No 49
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.15 E-value=2.9e-11 Score=115.00 Aligned_cols=98 Identities=19% Similarity=0.391 Sum_probs=86.6
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+|++. +.|+||.+.+. ++++.|+++||++++++++|++ ++++.. .|..++..|.+|++|+++++
T Consensus 14 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 81 (239)
T 3kbr_A 14 SGVLRVATT--GDYKPFSYRTE-EGGYAGFDVDMAQRLAESLGAK--LVVVPT-------SWPNLMRDFADDRFDIAMSG 81 (239)
T ss_dssp HTEEEEEEC--SEETTTEEECT-TSCEESHHHHHHHHHHHHTTCE--EEEEEC-------CTTTHHHHHHTTCCSEECSS
T ss_pred CCeEEEEEC--CCCCCeeEECC-CCCEEeehHHHHHHHHHHHCCc--eEEEEe-------CHHHHHHHHHCCCcCEEEeC
Confidence 467999995 46788988763 6789999999999999999998 666653 39999999999999999989
Q ss_pred eeeecccccceEecccccccceEEEEecCC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
++.|++|++.++||.||+..+..+++++.+
T Consensus 82 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 111 (239)
T 3kbr_A 82 ISINLERQRQAYFSIPYLRDGKTPITLCSE 111 (239)
T ss_dssp CBCCHHHHTTCEECSCSEEECEEEEEEGGG
T ss_pred CcCCHHHcCccccchHHhccCcEEEEECCc
Confidence 999999999999999999999999998754
No 50
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.14 E-value=1.2e-10 Score=109.62 Aligned_cols=97 Identities=25% Similarity=0.459 Sum_probs=84.5
Q ss_pred ceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeee
Q 006916 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 541 (625)
Q Consensus 462 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~ 541 (625)
++|+|++. +.|+||.+.+ .++++.|+++|+++++++++|++ +++++. .|..++.++.+|++|++++++
T Consensus 2 ~~l~v~~~--~~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~~ 69 (227)
T 3tql_A 2 DTIKFATE--ATYPPYVYMG-PSGQVEGFGADIVKAVCKQMQAV--CTISNQ-------PWDSLIPSLKLGKFDALFGGM 69 (227)
T ss_dssp CEEEEEEC--SCBTTTBEEC---CCEESHHHHHHHHHHHHTTCE--EEEEEC-------CHHHHHHHHHHTSCSEECSSC
T ss_pred ceEEEEEc--CCCCCeeEEC-CCCCcccchHHHHHHHHHHhCCe--EEEEeC-------CHHHHHHHHhCCCCCEEEecC
Confidence 57999995 3578888875 36789999999999999999998 566653 399999999999999998899
Q ss_pred eeecccccceEecccccccceEEEEecCC
Q 006916 542 AIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 542 ~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
+.+++|.+.++||.||+..+..+++++..
T Consensus 70 ~~~~~r~~~~~~s~p~~~~~~~l~~~~~~ 98 (227)
T 3tql_A 70 NITTARQKEVDFTDPYYTNSVSFIADKNT 98 (227)
T ss_dssp BCCTTGGGTEEECSCSBCCEEEEEEETTS
T ss_pred cCCHhHHhheecccceeccceEEEEeCCC
Confidence 99999999999999999999999998766
No 51
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.14 E-value=1.1e-10 Score=111.85 Aligned_cols=98 Identities=29% Similarity=0.544 Sum_probs=84.7
Q ss_pred CCceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 006916 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (625)
Q Consensus 460 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~ 539 (625)
..++|+|++. +.|+||.+.. ++++.|+++||++++++++|++ ++++... |..++.++.+|++|++++
T Consensus 22 ~~~~l~v~~~--~~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~--~~~~~~~-------~~~~~~~l~~g~~D~~~~ 88 (249)
T 4f3p_A 22 MAKELVVGTD--TSFMPFEFKQ--GDKYVGFDLDLWAEIAKGAGWT--YKIQPMD-------FAGLIPALQTQNIDVALS 88 (249)
T ss_dssp --CCEEEEEE--SCBTTTBEEE--TTEEESHHHHHHHHHHHHHTCC--EEEEEEC-------GGGHHHHHHTTSCSEEEE
T ss_pred cCceEEEEeC--CCCCCeEEec--CCeEEEEhHHHHHHHHHHcCCc--eEEEecC-------HHHHHHHHHCCCCCEEEe
Confidence 4688999996 4577787763 5789999999999999999998 5555422 999999999999999999
Q ss_pred eeeeecccccceEecccccccceEEEEecCC
Q 006916 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
+++.+++|.+.++||.||+..+..+++++..
T Consensus 89 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~ 119 (249)
T 4f3p_A 89 GMTIKEERRKAIDFSDPYYDSGLAAMVQANN 119 (249)
T ss_dssp EEECCHHHHTTEEECSCCEEEEEEEEEETTC
T ss_pred ccccCHHHHcCcceecceeeccEEEEEECCC
Confidence 9999999999999999999999999998766
No 52
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.13 E-value=5.3e-11 Score=113.64 Aligned_cols=98 Identities=24% Similarity=0.436 Sum_probs=87.1
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+|++. +.|+||.+.+. ++++.|+++||++++++++|++ +++++. .|.+++.+|.+|++|+++++
T Consensus 4 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 71 (245)
T 3k4u_A 4 RGELRVGLE--PGYLPFEMKDK-KGNVIGFDVDLAREMAKAMGVK--LKLVPT-------SWDGLIPGLVTEKFDIIISG 71 (245)
T ss_dssp CSEEEEEEC--TTSTTTCEEET-TTEEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHTTSCSEECSS
T ss_pred CCeEEEEEC--CCcCCeeEECC-CCCCccchHHHHHHHHHHhCCe--EEEEEc-------cHHHHHHHHhCCCcCEEEec
Confidence 467999996 57788888763 6889999999999999999988 666653 39999999999999999889
Q ss_pred eeeecccccceEecccccccceEEEEecCC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
++.+++|.+.++||.||+..+..+++++..
T Consensus 72 ~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~ 101 (245)
T 3k4u_A 72 MTISQERNLRVNFVEPYIVVGQSLLVKKGL 101 (245)
T ss_dssp CBCCHHHHTTSEECSCSEEECEEEEEETTT
T ss_pred CcCCHHHHhhcCcchhhheeceEEEEECCc
Confidence 999999999999999999999999998873
No 53
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.10 E-value=2.7e-10 Score=109.79 Aligned_cols=99 Identities=21% Similarity=0.447 Sum_probs=87.2
Q ss_pred CCceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 006916 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (625)
Q Consensus 460 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~ 539 (625)
..++|+|++. +.|+||.+.+ .++++.|+++|+++++++++|++ ++++.. .|+.++..+.+|++|++++
T Consensus 27 ~~~~l~v~~~--~~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~ 94 (259)
T 4dz1_A 27 EGRTLNVAVS--PASPPMLFKS-ADGKLQGIDLELFSSYCQSRHCK--LNITEY-------AWDGMLGAVASGQADVAFS 94 (259)
T ss_dssp TTCEEEEEEC--CCBTTTBEEC-TTCCEESHHHHHHHHHHHHHTCE--EEEEEC-------CHHHHHHHHHHTSSSEEEE
T ss_pred cCCeEEEEEC--CCCCCeEEEC-CCCCEEEeHHHHHHHHHHHhCCe--EEEEEc-------CHHHHHHHHhCCCCCEEEE
Confidence 3578999995 5678888876 46789999999999999999988 666663 3999999999999999999
Q ss_pred eeeeecccccceEecccccccceEEEEecCC
Q 006916 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
+++.|++|++.++||.||+..+..+++++++
T Consensus 95 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 125 (259)
T 4dz1_A 95 GISITDKRKKVIDFSEPYYINSFYLVSMANH 125 (259)
T ss_dssp EEECCHHHHTTEEECCCSEEEEEEEEEETTS
T ss_pred CCcCCHHHhhccccccchhhCceEEEEEcCC
Confidence 9999999999999999999999999997754
No 54
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.10 E-value=8.8e-11 Score=111.55 Aligned_cols=98 Identities=17% Similarity=0.315 Sum_probs=85.8
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+|++. +.|+||.+.+. ++++.|+++|+++++++++|++ ++++.. .|++++..|.+|++|+++++
T Consensus 3 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 70 (239)
T 1lst_A 3 PQTVRIGTD--TTYAPFSSKDA-KGEFIGFDIDLGNEMCKRMQVK--CTWVAS-------DFDALIPSLKAKKIDAIISS 70 (239)
T ss_dssp CSEEEEEEC--SCBTTTBEECT-TCCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHTTSCSEECSS
T ss_pred cceEEEEEC--CCcCCeeEECC-CCCEeeEHHHHHHHHHHHHCCe--EEEEeC-------CHHHHHHHHhCCCCCEEEEC
Confidence 467999993 56788888763 6789999999999999999988 666653 39999999999999999888
Q ss_pred eeeecccccceEecccccccceEEEEecCC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
++.+++|++.++||.||+..+..+++++..
T Consensus 71 ~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~ 100 (239)
T 1lst_A 71 LSITDKRQQEIAFSDKLYAADSRLIAAKGS 100 (239)
T ss_dssp CBCCHHHHHHCEECSCSBCCCEEEEEETTC
T ss_pred cCcCHHHhhceeecccceeCceEEEEeCCC
Confidence 999999999999999999999999998765
No 55
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.09 E-value=3.2e-10 Score=109.80 Aligned_cols=98 Identities=19% Similarity=0.311 Sum_probs=86.0
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+||+. +.|+||.+.+. ++++.|+++||++++++++|++ +++++. .+|..++.+|.+|++|+++ +
T Consensus 31 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~lg~~--~~~~~~------~~~~~~~~~l~~G~~D~~~-~ 98 (267)
T 3mpk_A 31 HPVVKVAVL--NLFAPFTLFRT-DEQFGGISAAVLQLLQLRTGLD--FEIIGV------DTVEELIAKLRSGEADMAG-A 98 (267)
T ss_dssp CSEEEEEEE--TEETTTEECCT-TCCCBSHHHHHHHHHHHHHCCE--EEEEEE------SSHHHHHHHHHHTSCSEEE-E
T ss_pred CCcEEEEeC--CCCCCeEEECC-CCcEeeeHHHHHHHHHHHHCCe--EEEEec------CCHHHHHHHHHCCCccEEe-c
Confidence 578999995 45788988763 6789999999999999999988 666653 3499999999999999975 8
Q ss_pred eeeecccccceEecccccccceEEEEecCC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
++.+++|.+.++||.||+..+..+++++..
T Consensus 99 ~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~ 128 (267)
T 3mpk_A 99 LFVNSARESFLSFSRPYVRNGMVIVTRQDP 128 (267)
T ss_dssp EECCGGGTTTEEECSCSEEECEEEEEESST
T ss_pred ccCChhhhcceEechhhccCceEEEEECCC
Confidence 999999999999999999999999998764
No 56
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.09 E-value=1.2e-10 Score=112.83 Aligned_cols=98 Identities=17% Similarity=0.348 Sum_probs=87.1
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+|++. +.|+||.+.+ .++++.|+++||++++++++|++ ++++.. .|..++..|.+|++|+++++
T Consensus 20 ~~~l~v~~~--~~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 87 (268)
T 3hv1_A 20 EKKIKIGFD--ATFVPMGYEE-KDGSYIGFDIDLANAVFKLYGID--VEWQAI-------DWDMKETELKNGTIDLIWNG 87 (268)
T ss_dssp HTEEEEEEC--TEETTTEEEC-TTSCEECHHHHHHHHHHHTTTCE--EEEEEC-------CGGGHHHHHHHTSCSEECSS
T ss_pred CCcEEEEEC--CCCCCceEEC-CCCCEEEehHHHHHHHHHHhCCc--EEEEEC-------CHHHHHHHHHCCCCCEEEec
Confidence 478999995 4678898876 36789999999999999999988 666663 39999999999999999989
Q ss_pred eeeecccccceEecccccccceEEEEecCC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
++.+++|++.++||.||+..+..+++++..
T Consensus 88 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 117 (268)
T 3hv1_A 88 YSVTDERKQSADFTEPYMVNEQVLVTKKSS 117 (268)
T ss_dssp CBCCHHHHTTCEECCCCEEECEEEEEEGGG
T ss_pred CccCHHHHhcCcCcHHHeeCceEEEEECCC
Confidence 999999999999999999999999998765
No 57
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.07 E-value=1.2e-10 Score=113.18 Aligned_cols=99 Identities=18% Similarity=0.306 Sum_probs=85.7
Q ss_pred CceEEEEecCCCCccccEEeeCCc--ceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEE
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGT--DIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 538 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~--~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~ 538 (625)
.++|+|++. +.|+||.+.+.++ +++.|+++|+++++++++|++ ++++.. .|.+++..|.+|++|+++
T Consensus 20 ~~~l~v~~~--~~~pP~~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~--v~~~~~-------~~~~~~~~l~~G~~D~~~ 88 (271)
T 2iee_A 20 KGKIVVATS--GTLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLK--VEFKEM-------GIDGMLTAVNSGQVDAAA 88 (271)
T ss_dssp HTEEEEEEC--SCBTTTBEEETTTTCCEEECHHHHHHHHHHHHTTCE--EEEEEC-------CSTTHHHHHHHTSSSEEC
T ss_pred CCeEEEEEC--CCCCCeeEeCCCCCCCCceeeHHHHHHHHHHHcCCe--EEEEEC-------CHHHHHHHHHCCCcCEEE
Confidence 467999995 4678888876421 789999999999999999988 555553 299999999999999999
Q ss_pred eeeeeecccccceEecccccccceEEEEecCC
Q 006916 539 GDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 539 ~~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
++++.|++|++.++||.||+..+..+++++..
T Consensus 89 ~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~ 120 (271)
T 2iee_A 89 NDIDVTKDREEKFAFSTPYKYSYGTAIVRKDD 120 (271)
T ss_dssp SSCBCCHHHHTTEEECCCSEEEEEEEEECTTT
T ss_pred eCCcCChhhccceEEeecceeCCeEEEEECCC
Confidence 88999999999999999999999999998765
No 58
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.06 E-value=4.9e-10 Score=105.77 Aligned_cols=99 Identities=25% Similarity=0.463 Sum_probs=83.3
Q ss_pred CceEEEEecCCCCccccEEee-CCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 006916 461 GRQLRIGVPNRVSYRDFVFKV-NGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~-~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~ 539 (625)
.++|+|++. +|+||.+.+ +.++++.|+++|+++++++++|++ ++++.. +.|..++..|.+|++|++++
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~------~~~~~~~~~l~~g~~D~~~~ 71 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEGKNAAFTGISLDVWRAVAESQKWN--SEYVRQ------NSISAGITAVAEGELDILIG 71 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC-----CEESHHHHHHHHHHHHHTCC--EEEEEC------SCHHHHHHHHHTTSCSEEEE
T ss_pred CceEEEEec---CCCCeEEEecCCCCCEEEEeHHHHHHHHHHcCCc--EEEEEe------CCHHHHHHHHHCCCcCEEEe
Confidence 367999995 367788762 146789999999999999999988 666664 24999999999999999999
Q ss_pred eeeeecccc--cceEecccccccceEEEEecCC
Q 006916 540 DIAIVTNRT--KAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 540 ~~~~t~~R~--~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
+++.+++|. +.++||.||+..+..+++++..
T Consensus 72 ~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~ 104 (233)
T 1ii5_A 72 PISVTPERAAIEGITFTQPYFSSGIGLLIPGTA 104 (233)
T ss_dssp EEECCHHHHTSTTEEECCCCEEEEEEEEEEGGG
T ss_pred eeecCccccccceeEEccceeecCeEEEEECCC
Confidence 899999999 9999999999999999998764
No 59
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.05 E-value=4.5e-10 Score=105.43 Aligned_cols=96 Identities=29% Similarity=0.554 Sum_probs=83.6
Q ss_pred ceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeee
Q 006916 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 541 (625)
Q Consensus 462 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~ 541 (625)
++|+|++. +.|+||.+.++ +++.|+++|+++++++++|++ ++++.. .|..++..+.+|++|++++++
T Consensus 3 ~~l~v~~~--~~~~P~~~~~~--g~~~G~~~dl~~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 3 KKLVVATD--TAFVPFEFKQG--DLYVGFDVDLWAAIAKELKLD--YELKPM-------DFSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp -CEEEEEE--SSBTTTBEEET--TEEESHHHHHHHHHHHHHTCC--EEEEEE-------CGGGHHHHHHTTSSSEEEEEE
T ss_pred ceEEEEEC--CCCCCeeEecC--CcEEEeeHHHHHHHHHHhCCE--EEEEEC-------CHHHHHHHHhCCCCCEEEEcC
Confidence 56999995 56788888763 789999999999999999988 555542 299999999999999999889
Q ss_pred eeecccccceEecccccccceEEEEecCC
Q 006916 542 AIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 542 ~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
+.+++|.+.++|+.||+..+..+++++..
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~ 98 (226)
T 1wdn_A 70 TITDERKKAIDFSDGYYKSGLLVMVKANN 98 (226)
T ss_dssp ECCHHHHTTSEECSCCEEEEEEEEEETTC
T ss_pred cCCHHHhCccccccchhcCceEEEEeCCC
Confidence 99999999999999999999999998765
No 60
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.04 E-value=2.7e-10 Score=108.58 Aligned_cols=95 Identities=19% Similarity=0.332 Sum_probs=84.1
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCC-CCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLP-YAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~ 539 (625)
.++|+|++. ..|+||.+. .++++.|+++||++++++++| ++ +++++. .|..++..|.+|++|++++
T Consensus 7 ~~~l~v~~~--~~~~P~~~~--~~g~~~G~~~dl~~~i~~~~g~~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~ 73 (246)
T 4eq9_A 7 KKEIIVATN--GSPRPFIYE--ENGELTGYEIEVVRAIFKDSDKYD--VKFEKT-------EWSGVFAGLDADRYNMAVN 73 (246)
T ss_dssp CEEEEEEEC--CCSTTTSEE--ETTEEESHHHHHHHHHHTTCSSEE--EEEEEC-------CHHHHHHHHHTTSCSEECS
T ss_pred CCEEEEEeC--CCcCCeEEc--CCCCCcccHHHHHHHHHHHcCCce--EEEEeC-------CHHHHHHHHhCCCcCEEec
Confidence 478999995 357778774 367899999999999999999 88 666653 3999999999999999998
Q ss_pred eeeeecccccceEecccccccceEEEEec
Q 006916 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPV 568 (625)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~l~~~ 568 (625)
+++.+++|.+.++||.||+..+..+++++
T Consensus 74 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~ 102 (246)
T 4eq9_A 74 NLSYTKERAEKYLYAAPIAQNPNVLVVKK 102 (246)
T ss_dssp SCCCCHHHHHHEEECCCCEECCEEEEEET
T ss_pred ccccChhhhhceeeccceecCceEEEEEC
Confidence 89999999999999999999999999988
No 61
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.03 E-value=5.9e-10 Score=105.29 Aligned_cols=98 Identities=20% Similarity=0.312 Sum_probs=84.8
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+|++. +.|+||.+.+. ++++.|+++||++++++++|++++ ++. ..|..++..+.+|++|++ ++
T Consensus 10 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~--~~~-------~~~~~~~~~l~~g~~D~~-~~ 76 (234)
T 3h7m_A 10 HRTIVVGGD--RDYPPYEFIDQ-NGKPAGYNVELTRAIAEVMGMTVE--FRL-------GAWSEMFSALKSGRVDVL-QG 76 (234)
T ss_dssp SSCEEEEEE--TEETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEE--EEE-------ECGGGHHHHHHTTSSSEE-EE
T ss_pred CCEEEEEec--CCCCCeEEECC-CCCEeeeEHHHHHHHHHHcCCceE--EEe-------CCHHHHHHHHhCCCeeEE-Ee
Confidence 577999994 56788988763 678999999999999999999844 444 239999999999999995 78
Q ss_pred eeeecccccceEecccccccceEEEEecCCC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKL 571 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~~ 571 (625)
++.+++|++.++||.|++..+..+++++...
T Consensus 77 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~ 107 (234)
T 3h7m_A 77 ISWSEKRARQIDFTPPHTIVYHAIFARRDSP 107 (234)
T ss_dssp EECCHHHHTTEEEEEEEEEEEEEEEEESSSC
T ss_pred ccCCHhHHhhcCCCccccccceEEEEECCCC
Confidence 9999999999999999999999999987664
No 62
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.02 E-value=4e-10 Score=106.09 Aligned_cols=98 Identities=27% Similarity=0.461 Sum_probs=85.6
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+|++. +.|+||.+.+. ++++.|+++|+++++++++|++ ++++.. .|..++..+.+|++|+++++
T Consensus 5 a~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 72 (229)
T 2y7i_A 5 ARTLHFGTS--ATYAPYEFVDA-DNKIVGFDIDVANAVCKEMQAE--CSFTNQ-------SFDSLIPSLRFKKFDAVIAG 72 (229)
T ss_dssp CCEEEEEEC--CCBTTTBEECT-TSCEESHHHHHHHHHHHHTTCE--EEEEEC-------CGGGHHHHHHTTSCSEECSS
T ss_pred CCcEEEEeC--CCcCCceEECC-CCCCcceeHHHHHHHHHHhCCe--EEEEEc-------CHHHHHHHHhCCCceEEEec
Confidence 578999994 56788887763 5789999999999999999988 566553 39999999999999999888
Q ss_pred eeeecccccceEeccccccc-ceEEEEecCC
Q 006916 541 IAIVTNRTKAVDFTQPYIES-GLVVVAPVRK 570 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~-~~~~l~~~~~ 570 (625)
++.+++|.+.++|+.|++.. ...+++++..
T Consensus 73 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~ 103 (229)
T 2y7i_A 73 MDMTPKREQQVSFSQPYYEGLSAVVVTRKGA 103 (229)
T ss_dssp CBCCHHHHTTSEECSCSBCCCCEEEEEETTS
T ss_pred CccCHHHhcceeeccccccCCcEEEEEeCCC
Confidence 89999999999999999999 9999998765
No 63
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.02 E-value=3.3e-10 Score=108.92 Aligned_cols=97 Identities=21% Similarity=0.217 Sum_probs=84.2
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCC-ccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYA-VPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~ 539 (625)
.++|+|++. .|+||.+.+ .++++.|+++|+++++++++|++ +++...+ |..++..+.+|++|++++
T Consensus 12 ~~~l~v~~~---~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~---------~~~~~~~l~~g~~D~~~~ 78 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVG-ADGKVSGAAPDVAREIFKRLGVADVVASISE---------YGAMIPGLQAGRHDAITA 78 (257)
T ss_dssp HTEEEEEEC---CCTTTCEEC-TTCCEESHHHHHHHHHHHHTTCCEEEEEECC---------GGGHHHHHHTTSCSEECS
T ss_pred CCeEEEEcC---CCCCeeEEC-CCCCcccccHHHHHHHHHHcCCCeeeEEeCC---------HHHHHHHHHCCCcCEEEe
Confidence 367999994 577788765 35789999999999999999987 5554433 999999999999999988
Q ss_pred eeeeecccccceEecccccccceEEEEecCC
Q 006916 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
+++.+++|.+.++||.||+..+..+++++..
T Consensus 79 ~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~ 109 (257)
T 2q88_A 79 GLFMKPERCAAVAYSQPILCDAEAFALKKGN 109 (257)
T ss_dssp CCBCCHHHHTTSEECSCCCEECEEEEEETTC
T ss_pred cccCCHHHHhccccccchhcCceEEEEECCC
Confidence 8999999999999999999999999998765
No 64
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=98.99 E-value=8.1e-10 Score=105.06 Aligned_cols=97 Identities=21% Similarity=0.317 Sum_probs=84.8
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+|++. +.|+||.+.+. ++++.|+++||++++++++|++ +++++. .|.+++..|.+|++|+++++
T Consensus 10 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 77 (242)
T 3del_B 10 SEKFIVGTN--ATYPPFEFVDK-RGEVVGFDIDLAREISNKLGKT--LDVREF-------SFDALILNLKQHRIDAVITG 77 (242)
T ss_dssp -CEEEEEEC--SCBTTTBEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHTTSSSEECSS
T ss_pred CCcEEEEeC--CCCCCeeEECC-CCCEEEeeHHHHHHHHHHcCCc--eEEEEc-------CHHHHHHHHhCCCcCEEEec
Confidence 478999994 56788888763 6889999999999999999988 666663 39999999999999999888
Q ss_pred eeeecccccceEeccccc--ccceEEEEecCC
Q 006916 541 IAIVTNRTKAVDFTQPYI--ESGLVVVAPVRK 570 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~--~~~~~~l~~~~~ 570 (625)
++.+++|.+.++| .||+ ..+..+++++..
T Consensus 78 ~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~ 108 (242)
T 3del_B 78 MSITPSRLKEILM-IPYYGEEIKHLVLVFKGE 108 (242)
T ss_dssp BBCCHHHHTTEEE-EEEEEEEESEEEEEEESC
T ss_pred CcCCHHHHhcccc-eeeeecCCceEEEEeCCC
Confidence 9999999999999 9999 889999998763
No 65
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=98.89 E-value=1.3e-09 Score=102.40 Aligned_cols=96 Identities=23% Similarity=0.422 Sum_probs=79.0
Q ss_pred ceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeee
Q 006916 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 541 (625)
Q Consensus 462 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~ 541 (625)
++|+|++. +++||.+. .++++.|+++|+++.+++++|++ ++++.. ..|.+++..|.+|++|++++++
T Consensus 3 ~~l~v~~~---~~~P~~~~--~~g~~~G~~~dl~~~~~~~~g~~--~~~~~~------~~~~~~~~~l~~g~~D~~~~~~ 69 (228)
T 2pyy_A 3 QPLLVATR---VIPPFVLS--NKGELSGFSIDLWRSIATQIGIE--SKLIEY------SSVPELISAIKDNKVNLGIAAI 69 (228)
T ss_dssp -CEEEEEC---CBTTTBBC--C---CBSHHHHHHHHHHHHHTCC--EEEEEC------SSHHHHHHHHHTTSCSEECSSC
T ss_pred ceEEEEec---CCCCeEEe--cCCceEEEeHHHHHHHHHHhCCc--EEEEEc------CCHHHHHHHHHCCCcCEEEecc
Confidence 57999996 36677665 35789999999999999999988 666664 2499999999999999998888
Q ss_pred eeecccccceEecccccccceEEEEecCC
Q 006916 542 AIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 542 ~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
+.+++|.+.++|+.|++..+..+++++.+
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~ 98 (228)
T 2pyy_A 70 SITAEREQNFDFSLPIFASGLQIMVRNLE 98 (228)
T ss_dssp BCCHHHHHHSEECSCSEEEEEEEEEEC--
T ss_pred ccCHHHHccceecccchhcceEEEEECCc
Confidence 99999999999999999999999998753
No 66
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=98.88 E-value=3.2e-09 Score=103.01 Aligned_cols=98 Identities=17% Similarity=0.412 Sum_probs=85.5
Q ss_pred CCceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 006916 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (625)
Q Consensus 460 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~ 539 (625)
..++|+|++. +.|+||.+.+ ++++.|+.+|+++++++++|++ ++++.. .|..++..|.+|++|++++
T Consensus 40 ~~~~l~v~~~--~~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~--v~~~~~-------~~~~~~~~l~~G~~D~~~~ 106 (272)
T 2pvu_A 40 TKKKVVVGTD--AAFAPFEYMQ--KGKIVGFDVDLLDAVMKAAGLD--YELKNI-------GWDPLFASLQSKEVDMGIS 106 (272)
T ss_dssp CCCCEEEEEC--CCBTTTBEEE--TTEEESHHHHHHHHHHHHHTCC--EEEEEC-------CHHHHHHHHHHTSSSEECS
T ss_pred cCCeEEEEEC--CCCCCeEEec--CCeEEEEHHHHHHHHHHHhCCc--eEEEEC-------CHHHHHHHHhCCCCCEEEe
Confidence 3578999995 4677887764 4789999999999999999988 666663 2999999999999999988
Q ss_pred eeeeecccccceEecccccccceEEEEecCC
Q 006916 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
+++.+++|.+.++|+.||+.....+++++..
T Consensus 107 ~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~ 137 (272)
T 2pvu_A 107 GITITDERKQSYDFSDPYFEATQVILVKQGS 137 (272)
T ss_dssp SCBCCHHHHTTEEECSCCEEECEEEEEETTC
T ss_pred CCcCCHHHHhcCccchhhhccceEEEEECCC
Confidence 8899999999999999999999999998765
No 67
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=98.82 E-value=5.8e-09 Score=102.01 Aligned_cols=98 Identities=24% Similarity=0.289 Sum_probs=84.2
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHH----CC---CCccEEEEeCCCCCCCCCHHHHHHHHHcCc
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRL----LP---YAVPYKFIPYGDGHKNPTYSELINQITTGV 533 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~----l~---~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 533 (625)
.++|+|++. +.|+||.+.+. ++++.|+++|+++++++. +| ++ +++++. .|..++..+.+|+
T Consensus 16 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~ia~~l~~~~G~~~~~--v~~~~~-------~~~~~~~~l~~g~ 83 (287)
T 2vha_A 16 NGVIVVGHR--ESSVPFSYYDN-QQKVVGYSQDYSNAIVEAVKKKLNKPDLQ--VKLIPI-------TSQNRIPLLQNGT 83 (287)
T ss_dssp HTEEEEEEC--SEETTTEEECS-SSCEESHHHHHHHHHHHHHHHHTTCTTCE--EEEEEC-------CTTTHHHHHHTTS
T ss_pred CCeEEEEEc--CCCCCceEECC-CCCcccccHHHHHHHHHHHHHhcCCCCce--EEEEEC-------CHHHHHHHHHCCC
Confidence 467999995 45788888763 578999999999999976 56 55 777773 3999999999999
Q ss_pred ccEEEeeeeeecccccceEecccccccceEEEEecCC
Q 006916 534 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 534 ~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
+|+++++++.+++|.+.++||.||+..+..+++++..
T Consensus 84 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~ 120 (287)
T 2vha_A 84 FDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG 120 (287)
T ss_dssp CSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS
T ss_pred eeEEeccccCCcchhhcccccceeeecceEEEEECCC
Confidence 9999888999999999999999999999999998765
No 68
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=98.76 E-value=9.2e-09 Score=100.39 Aligned_cols=98 Identities=21% Similarity=0.384 Sum_probs=85.8
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+|++. +.|+||.+.+ .++.+.|+.+|+++.+++++|++ ++++.. .|..++..|.+|++|+++++
T Consensus 56 ~~~l~v~~~--~~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~G~~--v~~~~~-------~~~~~~~~l~~G~~D~~~~~ 123 (283)
T 2yln_A 56 KGTVTVGTE--GTYAPFTYHD-KDGKLTGYDVEVTRAVAEKLGVK--VEFKET-------QWDSMMAGLKAGRFDVVANQ 123 (283)
T ss_dssp TCEEEEEEC--SEETTTEEEC-TTSCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHHTSCSEECSS
T ss_pred CCeEEEEEC--CCCCCeeEEC-CCCCEeeehHHHHHHHHHHcCCc--eEEEEC-------CHHHHHHHHHCCCcCEEEec
Confidence 467999995 3588888876 36789999999999999999988 666664 29999999999999999988
Q ss_pred eee-ecccccceEecccccccceEEEEecCC
Q 006916 541 IAI-VTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 541 ~~~-t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
++. +.+|.+.++|+.||+..+..+++++..
T Consensus 124 ~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~ 154 (283)
T 2yln_A 124 VGLTSPERQATFDKSEPYSWSGAVLVAHNDS 154 (283)
T ss_dssp CCCCSHHHHHHEEECSCSEEECEEEEEETTC
T ss_pred CccCChhhhcceEeccCeeeecEEEEEECCC
Confidence 888 999999999999999999999998754
No 69
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=98.75 E-value=1.3e-08 Score=98.37 Aligned_cols=98 Identities=17% Similarity=0.356 Sum_probs=85.3
Q ss_pred CceEEEEecCCCCccccEE---eeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEE
Q 006916 461 GRQLRIGVPNRVSYRDFVF---KVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAA 537 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~---~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~ 537 (625)
.++++|++. +.|+||.+ .+ +++++.|+++|+++++++++|++ ++++.. .|..++..+.+|++|++
T Consensus 38 ~~~l~v~~~--~~~~P~~~~~~~~-~~g~~~G~~~dl~~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~ 105 (269)
T 4i62_A 38 KGKLVVALN--PDFAPFEYQKVVD-GKNQIVGSDIELAKAIATELGVE--LELSPM-------SFDNVLASVQSGKADLA 105 (269)
T ss_dssp HTEEEEEEC--SCBTTTBEEEEET-TEEEEESHHHHHHHHHHHHHTCE--EEEEEC-------CHHHHHHHHHTTSCSEE
T ss_pred CCeEEEEec--CCCCCceeecccC-CCCcEeeecHHHHHHHHHHHCCc--eEEEEc-------CHHHHHHHHhCCCccEE
Confidence 357999995 45777877 44 56889999999999999999988 666653 39999999999999999
Q ss_pred EeeeeeecccccceEecccccccceEEEEecCC
Q 006916 538 VGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 538 ~~~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
+++++.+++|.+.+.|+.|+...+..+++++..
T Consensus 106 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~ 138 (269)
T 4i62_A 106 ISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSD 138 (269)
T ss_dssp CSSCBCCHHHHTTEEECSCCEECCEEEEEEGGG
T ss_pred ecCCcCCHhHhhceecccchhhcceEEEEECCc
Confidence 988999999999999999999999999998763
No 70
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=98.75 E-value=1.2e-08 Score=100.16 Aligned_cols=98 Identities=20% Similarity=0.299 Sum_probs=85.3
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHC---CCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEE
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAA 537 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~ 537 (625)
.++|+|++. +.|+||.+.+ .++...|+.+|+++.+++++ |++ ++++.. .|..++..+.+|++|++
T Consensus 43 ~~~l~v~~~--~~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~G~~D~~ 110 (292)
T 1xt8_A 43 NGVVRIGVF--GDKPPFGYVD-EKGNNQGYDIALAKRIAKELFGDENK--VQFVLV-------EAANRVEFLKSNKVDII 110 (292)
T ss_dssp HSSEEEEEC--SEETTTEEEC-TTSCEESHHHHHHHHHHHHHHSCTTC--EEEEEC-------CGGGHHHHHHTTSCSEE
T ss_pred CCeEEEEEC--CCCCCeeEEC-CCCCEeeEhHHHHHHHHHHhccCCce--EEEEEc-------CHHHHHHHHhCCCeeEE
Confidence 357999995 4578888876 46789999999999999999 988 666663 29999999999999999
Q ss_pred EeeeeeecccccceEecccccccceEEEEecCC
Q 006916 538 VGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 538 ~~~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
+++++.+++|.+.++|+.||...+..+++++.+
T Consensus 111 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~ 143 (292)
T 1xt8_A 111 LANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS 143 (292)
T ss_dssp CSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC
T ss_pred eecCCCCcchhcceeeeccceecceEEEEECCC
Confidence 888889999999999999999999999998765
No 71
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=98.72 E-value=2e-08 Score=96.81 Aligned_cols=97 Identities=23% Similarity=0.354 Sum_probs=84.0
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+|++. +.|+||.+.+. ++++.|+++|+++.+++++|++ ++++.. .|.+++..+.+|++|+++++
T Consensus 30 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 97 (268)
T 3qax_A 30 NRIWIVGTN--ATYPPFEYVDA-QGEVVGFDIDLAKAISEKLGKQ--LEVREF-------AFDALILNLKKHRIDAILAG 97 (268)
T ss_dssp -CEEEEEEC--SCBTTTBEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHHTSSSEECSC
T ss_pred CCeEEEEEC--CCCCCceEECC-CCCEEEEEHHHHHHHHHHhCCe--EEEEec-------CHHHHHHHHhCCCccEEeec
Confidence 467999995 45778887753 6789999999999999999988 666653 39999999999999999988
Q ss_pred eeeecccccceEeccccc--ccceEEEEecCC
Q 006916 541 IAIVTNRTKAVDFTQPYI--ESGLVVVAPVRK 570 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~--~~~~~~l~~~~~ 570 (625)
++.+++|.+.++| .||+ ..+..+++++.+
T Consensus 98 ~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~ 128 (268)
T 3qax_A 98 MSITPSRQKEIAL-LPYYGDEVQELMVVSKRS 128 (268)
T ss_dssp CBCCHHHHTTSEE-EEEECCCBCEEEEEEETT
T ss_pred CccCHhHhcceee-ecceecccceEEEEECCC
Confidence 9999999999999 9999 889999998763
No 72
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=98.71 E-value=2.2e-08 Score=95.97 Aligned_cols=99 Identities=18% Similarity=0.312 Sum_probs=85.3
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHC---CCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEE
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAA 537 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~ 537 (625)
.++|+||+. +.++||.+.+..++++.|+++|+++.+++++ |.+ ++++.. .|..++..|.+|++|++
T Consensus 37 ~~~l~vg~~--~~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~--v~~~~~-------~~~~~~~~l~~g~~D~~ 105 (259)
T 2v25_A 37 KGQLIVGVK--NDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKK--IKLVAV-------NAKTRGPLLDNGSVDAV 105 (259)
T ss_dssp HTCEEEEEC--SEETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTS--EEEEEC-------CTTTHHHHHHTTSCSEE
T ss_pred CCeEEEEEC--CCCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcc--eEEEEc-------CHHHHHHHHhCCCCCEE
Confidence 357999995 4577888876446789999999999999999 888 666663 38999999999999999
Q ss_pred EeeeeeecccccceEecccccccceEEEEecCC
Q 006916 538 VGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 538 ~~~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
+++++.+++|.+.++|+.||...+..+++++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 138 (259)
T 2v25_A 106 IATFTITPERKRIYNFSEPYYQDAIGLLVLKEK 138 (259)
T ss_dssp CSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG
T ss_pred EecCccCHHHHhcCcccccceeCceEEEEeCCC
Confidence 888889999999999999999999999998754
No 73
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=98.70 E-value=2.5e-08 Score=97.67 Aligned_cols=97 Identities=24% Similarity=0.396 Sum_probs=85.2
Q ss_pred ceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHC---CCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEE
Q 006916 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 538 (625)
Q Consensus 462 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~ 538 (625)
++|+|++. +.|+||.+.+ .++++.|+.+|+++.+++++ |++ ++++.. .|..++..|.+|++|+++
T Consensus 55 ~~l~vg~~--~~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~~~~g~~--v~~~~~-------~~~~~~~~l~~G~~D~~~ 122 (291)
T 2yjp_A 55 GVIRIGVF--GDKPPFGYVD-ANGKNQGFDVEIAKDLAKDLLGSPDK--VEFVLT-------EAANRVEYVRSGKVDLIL 122 (291)
T ss_dssp TCEEEEEC--SEETTTEEEC-TTSCEESHHHHHHHHHHHHHHSCGGG--EEEEEC-------CGGGHHHHHHTTSCSEEC
T ss_pred CeEEEEEc--CCCCCceEEC-CCCCEeehHHHHHHHHHHHhccCCce--EEEEEc-------cHHHHHHHHhCCCeeEEE
Confidence 56999995 4578888876 46789999999999999999 988 666664 299999999999999999
Q ss_pred eeeeeecccccceEecccccccceEEEEecCC
Q 006916 539 GDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 539 ~~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
++++.+.+|.+.++|+.||...+..+++++..
T Consensus 123 ~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~ 154 (291)
T 2yjp_A 123 ANFTQTPERAEAVDFADPYMKVALGVVSPKNK 154 (291)
T ss_dssp SSCBCCHHHHTTEEECCCCEEECEEEEEETTS
T ss_pred eCCCCChHHHccceeccCeeecceEEEEeCCC
Confidence 88899999999999999999999999998765
No 74
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.33 E-value=2.3e-05 Score=76.49 Aligned_cols=209 Identities=10% Similarity=-0.001 Sum_probs=128.8
Q ss_pred CCceEEEEEEeec---CCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC
Q 006916 23 KPEVLNVGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ 99 (625)
Q Consensus 23 ~~~~i~IG~l~~~---~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~ 99 (625)
.....+||+++|. +..+......+++.+.++. |+++. +.++..++....+....++.+++.+||...
T Consensus 16 ~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgii~~~ 85 (296)
T 3brq_A 16 AKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQLL--LADGKHSAEEERQAIQYLLDLRCDAIMIYP 85 (296)
T ss_dssp ---CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--------TCEEE--EECCTTSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred cCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 3457899999996 3444445667776666652 45554 456666776666667777778898888633
Q ss_pred ChHHHHHHHHhhhc-CCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchH
Q 006916 100 SAVMAHVLSHLANE-LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGV 176 (625)
Q Consensus 100 ~s~~~~~va~~~~~-~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~ 176 (625)
.......+. .+.. .++|+|......+ + +.+.....++...+..+++.|...|.++|++|..+.. .+....
T Consensus 86 ~~~~~~~~~-~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~ 158 (296)
T 3brq_A 86 RFLSVDEID-DIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERL 158 (296)
T ss_dssp SSSCHHHHH-HHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHH
T ss_pred CCCChHHHH-HHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHH
Confidence 322223333 3445 7999998754322 1 2233455666666788888888889999999986532 345567
Q ss_pred HHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006916 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 177 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (625)
+.|.+.+++.|+.+.....+... .+..+....++++.+. ++++|+. .+...+..+++++++.|+..++-+-+
T Consensus 159 ~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~v 232 (296)
T 3brq_A 159 AGYKDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQVSV 232 (296)
T ss_dssp HHHHHHHHTTTCCCCGGGEECCC--SSHHHHHHHHHHHHTC--CCSEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEE
T ss_pred HHHHHHHHHcCCCCChhhEEeCC--CChhHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEE
Confidence 88999999988765432112211 2234444556665443 4566654 45566778899999999865443333
No 75
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.28 E-value=7.6e-05 Score=73.50 Aligned_cols=198 Identities=13% Similarity=0.052 Sum_probs=125.8
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChHHHH
Q 006916 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (625)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG-~~~s~~~~ 105 (625)
++||++.|....+......+++.+.++. |+++.+.. .+..++....+....++.+++.+||. +..+....
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL--------GVDTKFFV-PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI 72 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH--------TCEEEEEC-CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc--------CCEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 6899999864323345566777776663 45655432 23456777677777788889988875 44433322
Q ss_pred HHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHc--CCcEEEEEEecC--CCCcchHHHHHH
Q 006916 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDD--DQGRNGVTALGD 181 (625)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~--~W~~v~ii~~d~--~~g~~~~~~l~~ 181 (625)
.....+...++|+|......+. .+.+....+++...+..+++.|... |.++|++|.... .......+.|++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 147 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKD 147 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHH
Confidence 3334455689999987543321 1123344566777778888888776 999999998652 234556788999
Q ss_pred HHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCC
Q 006916 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGM 243 (625)
Q Consensus 182 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~ 243 (625)
.+++.|+++....... .+..+....++++.+. .+++|+. .+...+..+++++++.|.
T Consensus 148 ~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~ 206 (313)
T 2h3h_A 148 AIKDSEIEIVDILNDE----EDGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQALVVKNAGK 206 (313)
T ss_dssp HHTTSSCEEEEEEECS----SCHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHHHHHHHTTC
T ss_pred HhcCCCCEEEEeecCC----CCHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHHHHHHHcCC
Confidence 9999998875432222 2244445555555443 3466654 445567788999999884
No 76
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.25 E-value=6.7e-05 Score=72.24 Aligned_cols=199 Identities=10% Similarity=-0.048 Sum_probs=129.7
Q ss_pred EEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcC-cEEEEcCC-ChHH
Q 006916 27 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETD-TLAIVGPQ-SAVM 103 (625)
Q Consensus 27 i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~-v~aviG~~-~s~~ 103 (625)
++||+++|.. ..+-.....+++-+.++. |+++.+...++..++....+....++.++ +.+||-.. .+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH
Confidence 4899999864 333345566776666663 56666554446667777777888888888 99888543 3333
Q ss_pred HHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHc----CCcEEEEEEecC--CCCcchHH
Q 006916 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF----GWGEVIAIFNDD--DQGRNGVT 177 (625)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~----~W~~v~ii~~d~--~~g~~~~~ 177 (625)
.......+...++|+|......+ .. +......+++...+..+++.|... |-++++++..+. .......+
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~---~~--~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLA---GD--AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCS---SS--CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCC---CC--CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 44445566778999998754332 11 122334566777788888888777 899999998543 23456678
Q ss_pred HHHHHHhcc-ceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCC
Q 006916 178 ALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGM 243 (625)
Q Consensus 178 ~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~ 243 (625)
.+.+.+++. |+++... .... .+.......++++.+. +++.|+ +.+...+..+++++++.|+
T Consensus 148 gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 148 GFLDVLRKHDKIRIIAA--PYAG--DDRGAARSEMLRLLKETPTIDGLF-TPNESTTIGALVAIRQSGM 211 (276)
T ss_dssp HHHHHHTTCTTEEEEEC--CBCC--SSHHHHHHHHHHHHHHCSCCCEEE-CCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCcEEEEE--ecCC--CcHHHHHHHHHHHHHhCCCceEEE-ECCchhhhHHHHHHHHcCC
Confidence 899999888 8877532 2211 2344455555555443 345444 4455667788999999997
No 77
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.19 E-value=0.00012 Score=71.03 Aligned_cols=209 Identities=11% Similarity=0.002 Sum_probs=125.5
Q ss_pred CceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChH
Q 006916 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (625)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~ 102 (625)
....+||+++|.. ..+......+++.+.++. |+++.+ .++..++....+....++++++.+||......
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 74 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEY 74 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EcCCCChHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 3567899999863 333334566666666653 455544 56666776666666777778898887532221
Q ss_pred HHHHHHHhhhc-CCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecC--CCCcchHHHH
Q 006916 103 MAHVLSHLANE-LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTAL 179 (625)
Q Consensus 103 ~~~~va~~~~~-~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~--~~g~~~~~~l 179 (625)
.. .+...+.. .++|+|......+ +. ++.....+++...+..+++.|...|.++|++|..+. .......+.+
T Consensus 75 ~~-~~~~~l~~~~~iPvV~~~~~~~---~~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~ 148 (289)
T 1dbq_A 75 PE-PLLAMLEEYRHIPMVVMDWGEA---KA--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGF 148 (289)
T ss_dssp CH-HHHHHHHHTTTSCEEEEECSSC---CS--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHH
T ss_pred CH-HHHHHHHhccCCCEEEEccCCC---cc--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHH
Confidence 11 22333333 7999998754332 11 122344556666778888888888999999997642 3456778889
Q ss_pred HHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006916 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 180 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (625)
.+.+++.|+.+.....+... .+..+....++++.+. ++++|+. .+...+..+++++++.|+..++-+-+
T Consensus 149 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~v 219 (289)
T 1dbq_A 149 MKAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSL 219 (289)
T ss_dssp HHHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHCCCCCChHHeEeCC--CCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 99999988765322112211 1234444556665443 4566654 45567778899999999865443333
No 78
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.17 E-value=8.9e-05 Score=72.58 Aligned_cols=190 Identities=16% Similarity=0.142 Sum_probs=118.1
Q ss_pred CCceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChH
Q 006916 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~ 102 (625)
++++.+||++.+.+..+-.....++ .+.+++.+-+ .|+++.+.+.|+..++....+....+.++++.+||.... .
T Consensus 5 ~~~t~~IGvi~~~~~p~~~~~~~gi---~~~l~~~Gy~-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~-~ 79 (302)
T 2qh8_A 5 MAKTAKVAVSQIVEHPALDATRQGL---LDGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIAT-P 79 (302)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHH---HHHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESH-H
T ss_pred ccCCcEEEEEEeccChhHHHHHHHH---HHHHHHcCCC-CCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCh-H
Confidence 3468999988433332212233344 3455555544 377899999999999988888888888889998887542 2
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCC------CCCCceEEccCchHHHHHHHHHHHHHc--CCcEEEEEEecCC-CCc
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSP------LQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD-QGR 173 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~------~~~~~~~r~~ps~~~~~~al~~ll~~~--~W~~v~ii~~d~~-~g~ 173 (625)
....+.. ...++|+|..+..++.... ...+++.... +.......++++... |.+++++|+.... .+.
T Consensus 80 ~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~ 155 (302)
T 2qh8_A 80 TAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANAV 155 (302)
T ss_dssp HHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHH
T ss_pred HHHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCcEEEEEecCCCcchH
Confidence 2233333 2679999977654442110 1113333332 111245556777666 9999999997543 255
Q ss_pred chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006916 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 174 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
...+.+++.+++.|+.+...... ...+....++++.. ++++|+...+.
T Consensus 156 ~r~~g~~~al~~~gi~~~~~~~~------~~~~~~~~~~~l~~-~~dai~~~~D~ 203 (302)
T 2qh8_A 156 SLMELLKLSAAKHGIKLVEATAL------KSADVQSATQAIAE-KSDVIYALIDN 203 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECS------SGGGHHHHHHHHGG-GCSEEEECSCH
T ss_pred HHHHHHHHHHHHcCCEEEEEecC------ChHHHHHHHHHHhc-cCCEEEECCcH
Confidence 66788999999999987654322 13566677788764 67877765443
No 79
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.17 E-value=2.1e-05 Score=76.45 Aligned_cols=207 Identities=8% Similarity=-0.067 Sum_probs=123.0
Q ss_pred CCceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChH
Q 006916 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~ 102 (625)
.....+||+++|....+......+++.+.++ . |+++.+ .++..++....+....++.+++.+||......
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~---~-----g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 74 (288)
T 2qu7_A 5 TGRSNIIAFIVPDQNPFFTEVLTEISHECQK---H-----HLHVAV--ASSEENEDKQQDLIETFVSQNVSAIILVPVKS 74 (288)
T ss_dssp --CEEEEEEEESSCCHHHHHHHHHHHHHHGG---G-----TCEEEE--EECTTCHHHHHHHHHHHHHTTEEEEEECCSSS
T ss_pred cCCCCEEEEEECCCCchHHHHHHHHHHHHHH---C-----CCEEEE--EeCCCCHHHHHHHHHHHHHcCccEEEEecCCC
Confidence 3457889999997211122333444444433 1 455544 56666766666666777788999988644332
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHH
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALG 180 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l~ 180 (625)
....+..+ .++|+|......+ + +.+.....++...+..+++.|...|-++|++|..... ......+.|.
T Consensus 75 ~~~~~~~l---~~iPvV~~~~~~~---~---~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~ 145 (288)
T 2qu7_A 75 KFQMKREW---LKIPIMTLDRELE---S---TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYN 145 (288)
T ss_dssp CCCCCGGG---GGSCEEEESCCCS---S---CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHH
T ss_pred ChHHHHHh---cCCCEEEEecccC---C---CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHH
Confidence 21222233 7899998754332 1 1233445667777788888888889999999986432 3445678888
Q ss_pred HHHhccceEEEEeeec--CCCCCC----ChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006916 181 DKLAEIRCKISYKSAL--PPDQSV----TETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 181 ~~l~~~g~~v~~~~~~--~~~~~~----~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (625)
+.+++.|+.+.....+ ... . +..+-...++++.+.++++|+. .+...+..+++++++.|+..++-+-+
T Consensus 146 ~~l~~~g~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~v 219 (288)
T 2qu7_A 146 KAISEFDLNVNPSLIHYSDQQ--LGTNAQIYSGYEATKTLLSKGIKGIVA-TNHLLLLGALQAIKESEKEIKKDVII 219 (288)
T ss_dssp HHHHHTTCCCCGGGEEECCSS--CSHHHHHHHHHHHHHHHHHTTCCEEEE-CSHHHHHHHHHHHHHSSCCBTTTBEE
T ss_pred HHHHHcCCCCCcceEEeccCC--ccccCCHHHHHHHHHHHHhcCCCEEEE-CCcHHHHHHHHHHHHhCCCCCCceEE
Confidence 9999988765321111 111 1 1223334444443336777664 45556778899999999765443433
No 80
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.16 E-value=0.0002 Score=71.03 Aligned_cols=205 Identities=9% Similarity=0.003 Sum_probs=127.4
Q ss_pred ceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcC--cEEEEcCCCh
Q 006916 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETD--TLAIVGPQSA 101 (625)
Q Consensus 25 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~--v~aviG~~~s 101 (625)
...+||+++|.. ..+-.....+++.+.++. |+++. +.++..++....+....+++++ +.+||.....
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~ 73 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV--------GLPYV--PLTTEGSSEKGIADIRALLQKTGGNLVLNVDPND 73 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCCEE--EEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSS
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc--------CCEEE--EecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCC
Confidence 456899999853 222224455555555553 44443 4566667766666677777788 9998864333
Q ss_pred H-HHHHHHHhhhcCCCcEEeeccCCCCCCCCCC--CceEEccCchHHHHHHHHHHHHH--cCCcEEEEEEecCC--CCcc
Q 006916 102 V-MAHVLSHLANELQVPLLSFTALDPTLSPLQY--PFFVQTAPNDLYLMSAIAEMVSY--FGWGEVIAIFNDDD--QGRN 174 (625)
Q Consensus 102 ~-~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~--~~~~r~~ps~~~~~~al~~ll~~--~~W~~v~ii~~d~~--~g~~ 174 (625)
. ........+...++|+|......+..+...+ +.+.....++...+..+++.|.. .|-++|++|..... ....
T Consensus 74 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~ 153 (332)
T 2rjo_A 74 SADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIE 153 (332)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHH
Confidence 3 2223344455679999987544332111111 24555667777778888888877 69999999986432 3456
Q ss_pred hHHHHHHHHhcc-ceEEEEeeecCCCCCCChhHHHHHHHHHhcC---CceEEEEEcchhhHHHHHHHHHHcCCC
Q 006916 175 GVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQRLGMM 244 (625)
Q Consensus 175 ~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~---~~~vIvl~~~~~~~~~il~~a~~~g~~ 244 (625)
..+.|.+.+++. |+.+.....-. .+..+....++++.+. .++.|+ +.+...+..+++++++.|+.
T Consensus 154 R~~Gf~~al~~~pgi~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~aI~-~~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 154 RKAGLDAALKKFPGIQLLDFQVAD----WNSQKAFPIMQAWMTRFNSKIKGVW-AANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHHGGGEEEEE-ESSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHhCCCcEEEeeccCC----CCHHHHHHHHHHHHHhcCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 678899999998 88775432211 1244444555555433 355554 45556688899999998875
No 81
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.14 E-value=9e-05 Score=72.34 Aligned_cols=203 Identities=11% Similarity=-0.018 Sum_probs=132.0
Q ss_pred eEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC--CChHHHHHHHHHHHhcCcEEEE-cCCCh
Q 006916 26 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK--FNGFLSIMGALQFMETDTLAIV-GPQSA 101 (625)
Q Consensus 26 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~--~~~~~a~~~~~~l~~~~v~avi-G~~~s 101 (625)
.++||++.|.. ..+-.....+++.+.++. |+++.+ .++. .++....+....++.+++.+|| .|...
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~ 72 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--------KVDLQI--LAPPGANDVPKQVQFIESALATYPSGIATTIPSD 72 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--------TCEEEE--ECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCS
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--------CcEEEE--ECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCH
Confidence 57899999975 333345567777777763 455554 4443 5777777777788888998877 45444
Q ss_pred HHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcC--CcEEEEEEecCC--CCcchHH
Q 006916 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG--WGEVIAIFNDDD--QGRNGVT 177 (625)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~--W~~v~ii~~d~~--~g~~~~~ 177 (625)
.........+...+||+|......+... ..+.+.....++...+..+++.|...| -++++++..+.. ......+
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~ 150 (297)
T 3rot_A 73 TAFSKSLQRANKLNIPVIAVDTRPKDKT--KNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAY 150 (297)
T ss_dssp STTHHHHHHHHHHTCCEEEESCCCSCTT--TSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCcccc--ccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHH
Confidence 4334445566677999998755433211 113344555677777888888888888 899999976433 3345678
Q ss_pred HHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCC
Q 006916 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (625)
Q Consensus 178 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~ 246 (625)
.+++.+++.|+++.... . . .........++++.+. +++.|+ +.+...+..+++++++.|+..+
T Consensus 151 Gf~~~l~~~g~~~~~~~--~-~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP 215 (297)
T 3rot_A 151 GIKTILQDKGIFFEELD--V-G--TDPNQVQSRVKSYFKIHPETNIIF-CLTSQALDPLGQMLLHPDRYDF 215 (297)
T ss_dssp HHHHHHHHTTCEEEEEE--C-C--SCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHSHHHHTC
T ss_pred HHHHHHHhcCCeEEEee--c-C--CChHHHHHHHHHHHHhCCCCCEEE-EcCCcchHHHHHHHHhcCCccC
Confidence 89999999999886543 1 1 2244555556654333 345544 4556677788888888886543
No 82
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.13 E-value=0.00031 Score=68.65 Aligned_cols=202 Identities=10% Similarity=-0.040 Sum_probs=123.5
Q ss_pred ceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCChH
Q 006916 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAV 102 (625)
Q Consensus 25 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~avi-G~~~s~ 102 (625)
+..+||++.|.. ..+......+++.+.++. |+++.+ +.++..++....+....++.+++.+|| .+..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--------g~~~~~-~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 73 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF--------NLNASQ-VGPSSTDAPQQVKIIEDLIARKVDAITIVPNDAN 73 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--------TEEEEE-ECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc--------CCEEEE-ECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 468899999864 333344566777666663 444432 234556777777777778888998876 454444
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHH-cCCc-EEEEEEecCC--CCcchHHH
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWG-EVIAIFNDDD--QGRNGVTA 178 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~-~~W~-~v~ii~~d~~--~g~~~~~~ 178 (625)
........+...++|+|...... ... +.+.....++...+..+++.|.. .|-+ +++++..... ......+.
T Consensus 74 ~~~~~~~~~~~~~ipvV~~~~~~--~~~---~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 74 VLEPVFKKARDAGIVVLTNESPG--QPS---ANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTT--CTT---CSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCC--CCC---CceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 33344455667899999875431 111 23344566777777888888777 8887 9998875432 23455678
Q ss_pred HHHHHhccc--eEEEEeeecCCCCCCChhHHHHHHHHHhcCC--ceEEEEEcchhhHHHHHHHHHHcCCC
Q 006916 179 LGDKLAEIR--CKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMM 244 (625)
Q Consensus 179 l~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~vIvl~~~~~~~~~il~~a~~~g~~ 244 (625)
+++.+++.+ +++... .+... .+..+....++++.+.. ++.|+ +.+...+..+++++++.|+.
T Consensus 149 f~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~ 214 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTR-RMPVA--ESVDDSRRTTLDLMKTYPDLKAVV-SFGSNGPIGAGRAVKEKRAK 214 (303)
T ss_dssp HHHHHHHHCTTEEESSS-CBSCT--TCHHHHHHHHHHHHHHCTTEEEEE-ESSTTHHHHHHHHHHHTTCT
T ss_pred HHHHHHhhCCCCEEEEe-ecCCC--CCHHHHHHHHHHHHHhCCCCCEEE-EeCCcchhHHHHHHHhcCCC
Confidence 888888764 444321 11211 23444555666654443 44444 44556777889999999875
No 83
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.12 E-value=0.0002 Score=69.40 Aligned_cols=202 Identities=9% Similarity=-0.057 Sum_probs=124.7
Q ss_pred ceEEEEEEeecCC---CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 006916 25 EVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (625)
Q Consensus 25 ~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s 101 (625)
...+||++.|... .+......+++.+.++. |+++.+...|+..++....+....++.+++.+||.....
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 75 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAAD 75 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSC
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--------CCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 4568999998632 33334556666666654 456655433335666666667777788899888764333
Q ss_pred -HHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHc-C-CcEEEEEEecCC--CCcchH
Q 006916 102 -VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-G-WGEVIAIFNDDD--QGRNGV 176 (625)
Q Consensus 102 -~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~-~-W~~v~ii~~d~~--~g~~~~ 176 (625)
.........+...++|+|......+ + .+.+....+++...+..+++.|... | -++|++|..... ......
T Consensus 76 ~~~~~~~~~~~~~~~iPvV~~~~~~~---~--~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~ 150 (289)
T 3brs_A 76 YEKTYDAAKEIKDAGIKLIVIDSGMK---Q--DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDRE 150 (289)
T ss_dssp TTTTHHHHTTTGGGTCEEEEESSCCS---S--CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHH
T ss_pred hHHhHHHHHHHHHCCCcEEEECCCCC---C--CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHH
Confidence 2222333445567999998754322 1 1223455667777778888887774 6 999999986532 344567
Q ss_pred HHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCC
Q 006916 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMM 244 (625)
Q Consensus 177 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~ 244 (625)
+.+.+.+++.|..+....... .+..+....++++.+. .+++|+ +.+...+..+++++++.|+.
T Consensus 151 ~gf~~~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~ 215 (289)
T 3brs_A 151 EGLKIGLSDDSNKIEAIYYCD----SNYDKAYDGTVELLTKYPDISVMV-GLNQYSATGAARAIKDMSLE 215 (289)
T ss_dssp HHHHHHHGGGGGGEEEEEECT----TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhCCCcEEeeecCC----CCHHHHHHHHHHHHHhCCCceEEE-ECCCcchHHHHHHHHhcCCC
Confidence 888999998887643222111 2244444555555433 355544 45556778889999999875
No 84
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.06 E-value=0.00025 Score=68.86 Aligned_cols=201 Identities=13% Similarity=0.027 Sum_probs=127.5
Q ss_pred ceEEEEEEeecCC-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCChH
Q 006916 25 EVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAV 102 (625)
Q Consensus 25 ~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~avi-G~~~s~ 102 (625)
+..+||+++|... .+......+++-+.++. |+++. +.++..++....+....++.+++.+|| .|..+.
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 73 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--------GGTAI--ALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLD 73 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 4578999999643 22223455665555552 45554 456666777766777778888998887 455544
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHH--cCCcEEEEEEecCC--CCcchHHH
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY--FGWGEVIAIFNDDD--QGRNGVTA 178 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~--~~W~~v~ii~~d~~--~g~~~~~~ 178 (625)
........+...++|+|......+ + .+.....++...+..+++.|.. .|-++++++..... ......+.
T Consensus 74 ~~~~~~~~~~~~~iPvV~~~~~~~---~----~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (291)
T 3l49_A 74 VLNPWLQKINDAGIPLFTVDTATP---H----AINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQ 146 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCT---T----CSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCcEEEecCCCC---C----cCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHH
Confidence 555556667778999998754332 1 2234455666678888888877 89999999975432 23345778
Q ss_pred HHHHHhcc-ceEEEEeeecCCCCCCChhHHHHHHHHHhcC-----CceEEEEEcchhhHHHHHHHHHHcCCC
Q 006916 179 LGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM-----EARVIVVHGYSRTGLMVFDVAQRLGMM 244 (625)
Q Consensus 179 l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~-----~~~vIvl~~~~~~~~~il~~a~~~g~~ 244 (625)
+.+.+++. |+++.....+... ..+.......++++.+. ++++|+ +.+...+..+++++++.|+.
T Consensus 147 f~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 147 MKYVLEAFPDVKIIEPELRDVI-PNTIQSAYSNVTDMLTKYPNEGDVGAIW-ACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp HHHHHHTCTTEEECSSCBCCCS-SSHHHHHHHHHHHHHHHCCSTTSCCEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCCEEEeeeccCCC-CCCHHHHHHHHHHHHHhCCCcCCcCEEE-ECCCchHHHHHHHHHHcCCC
Confidence 88999988 6775433322222 01233334445554433 456654 55667788889999999975
No 85
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=98.05 E-value=0.00043 Score=66.98 Aligned_cols=205 Identities=8% Similarity=-0.023 Sum_probs=123.0
Q ss_pred CceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChH
Q 006916 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (625)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~ 102 (625)
....+||+++|.. ..+......+++.+.++ .|+++.+ .++..++....+....++.+++.+||......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEK--------NGYRILL--CNTESDLARSRSCLTLLSGKMVDGVITMDALS 75 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHTHHHHTTCCSEEEECCCGG
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 3567899999863 22223444555555544 1566544 45555665555566667778999888643332
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHH
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALG 180 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l~ 180 (625)
....+.. +. .++|+|......+ +. .+.....++...+..+++.|...|-++|++|..... ......+.+.
T Consensus 76 ~~~~~~~-l~-~~iPvV~~~~~~~---~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~ 147 (285)
T 3c3k_A 76 ELPELQN-II-GAFPWVQCAEYDP---LS---TVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYL 147 (285)
T ss_dssp GHHHHHH-HH-TTSSEEEESSCCT---TS---SSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHH
T ss_pred ChHHHHH-Hh-cCCCEEEEccccC---CC---CCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHH
Confidence 2233333 34 8999998754322 11 122344566666777888888889999999986533 2445677888
Q ss_pred HHHhccceEEEEeeecCCCCCCChhHHHHHHHH--HhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVK--VRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 181 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~--i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
+.+++.|+.+. ...-... ..+....+++ +.+. .++.|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 148 ~~l~~~g~~~~-~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vv 217 (285)
T 3c3k_A 148 NRLKFHGLDYS-RISYAEN----LDYMAGKLATFSLLKSAVKPDAIF-AISDVLAAGAIQALTESGLSIPQDVAVV 217 (285)
T ss_dssp HHHHHHTCCCC-EEEECSS----SSHHHHHHHHHHHHSSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCce-EeecCCC----hHHHHHHHHHHHHHcCCCCCeEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 89998887643 1111111 2233445555 5443 456655 4555667888999999998655444443
No 86
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.04 E-value=0.00052 Score=67.57 Aligned_cols=196 Identities=12% Similarity=-0.008 Sum_probs=119.2
Q ss_pred EEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe-cCCCChHHHHHHHHHHHhcCcEEEE-cCCChHHH
Q 006916 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMH-DAKFNGFLSIMGALQFMETDTLAIV-GPQSAVMA 104 (625)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~-D~~~~~~~a~~~~~~l~~~~v~avi-G~~~s~~~ 104 (625)
+||+++|.. ..+......+++.+.++. |+++ .+. ++..++....+....++.+++.+|| .|..+...
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--------g~~~--~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKAL--------GIDV--TYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHH--------TCEE--EECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh--------CCEE--EEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 799999864 222334556666666664 3444 444 3566777777778888888998865 45544433
Q ss_pred HHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHH---cCCcEEEEEEecC--CCCcchHHHH
Q 006916 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY---FGWGEVIAIFNDD--DQGRNGVTAL 179 (625)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~---~~W~~v~ii~~d~--~~g~~~~~~l 179 (625)
..+...+...+||+|.+....+ .. ....+.........+...++.|.. .|-+++++|.... .......+.+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~---~~-~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~ 150 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTK---PE-CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 150 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCC---GG-GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCCC---CC-CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHH
Confidence 4444556678999998753221 11 112233245566667777777766 5789999998542 2334556778
Q ss_pred HHHHhcc--ceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcC
Q 006916 180 GDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLG 242 (625)
Q Consensus 180 ~~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g 242 (625)
.+.+++. ++++.....-. .+.......++++.+. +++.|+ +.+...+..+++++++.|
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~aI~-~~nD~~A~g~~~al~~~G 212 (316)
T 1tjy_A 151 KAKISQEHPGWEIVTTQFGY----NDATKSLQTAEGIIKAYPDLDAII-APDANALPAAAQAAENLK 212 (316)
T ss_dssp HHHHHHHCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCSSCCEEE-ECSTTHHHHHHHHHHHTT
T ss_pred HHHHHhhCCCcEEEEeccCC----CCHHHHHHHHHHHHHhCCCCCEEE-ECCCccHHHHHHHHHHcC
Confidence 8888765 56654332212 2244445555555443 345444 445566788888989888
No 87
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=98.04 E-value=0.00036 Score=68.13 Aligned_cols=204 Identities=14% Similarity=0.102 Sum_probs=127.7
Q ss_pred CCceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChH
Q 006916 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~ 102 (625)
..++++||++--.....-...+.|+ .+++++.|.. .|.++++.+.|.++|+..+.+.+.+++++++++||+. .+.
T Consensus 5 ~~~~~~igi~q~~~hp~ld~~~~G~---~~~L~~~G~~-~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai-~t~ 79 (302)
T 3lkv_A 5 MAKTAKVAVSQIVEHPALDATRQGL---LDGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGI-ATP 79 (302)
T ss_dssp --CCEEEEEEESCCCHHHHHHHHHH---HHHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEE-SHH
T ss_pred hcCCceEEEEEeecChhHHHHHHHH---HHHHHhhCcc-cCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEc-CCH
Confidence 4578999987444322112445566 3455656544 4788999999999999999999999999999999863 344
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCC------CCCCceEEccCchHHHHHHHHHHHHHc--CCcEEEEEEecCCC-Cc
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSP------LQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDDQ-GR 173 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~------~~~~~~~r~~ps~~~~~~al~~ll~~~--~W~~v~ii~~d~~~-g~ 173 (625)
.+.+++. ...++|+|-.+.++|.... ..-+++..+. +..-....++++++. +-+++++||+..+. ..
T Consensus 80 aa~a~~~--~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~ 155 (302)
T 3lkv_A 80 TAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANAV 155 (302)
T ss_dssp HHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHH
T ss_pred HHHHHHh--hcCCCCeEEEecCCcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccHH
Confidence 4444443 3457999877777764332 1123444432 111234455666653 68999999975543 33
Q ss_pred chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh---hHHHHHHHHHHcC
Q 006916 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR---TGLMVFDVAQRLG 242 (625)
Q Consensus 174 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~---~~~~il~~a~~~g 242 (625)
...+.+++.+++.|+++.... .. ...++...++.+. .+.+++++..+.. ....+...+.+.+
T Consensus 156 ~~~~~~~~~~~~~g~~~v~~~-~~-----~~~~~~~~~~~l~-~~~d~i~~~~d~~~~~~~~~i~~~~~~~~ 220 (302)
T 3lkv_A 156 SLMELLKLSAAKHGIKLVEAT-AL-----KSADVQSATQAIA-EKSDVIYALIDNTVASAIEGMIVAANQAK 220 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-CS-----SGGGHHHHHHHHH-TTCSEEEECSCHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCEEEEEe-cC-----ChHHHHHHHHhcc-CCeeEEEEeCCcchhhHHHHHHHHHhhcC
Confidence 456778888888999886433 21 2456777777765 4577777765542 2233344444444
No 88
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=0.00038 Score=68.83 Aligned_cols=201 Identities=8% Similarity=0.040 Sum_probs=119.4
Q ss_pred CceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHH
Q 006916 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (625)
Q Consensus 24 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~ 103 (625)
....+||+++|.+. .....+..++++.=+.. .|+++. +.++..++....+....++.+++.+||....+..
T Consensus 4 ~~~~~Igvi~~~~~----~~~~~~~~gi~~~a~~~---~g~~l~--i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~ 74 (325)
T 2x7x_A 4 TPHFRIGVAQCSDD----SWRHKMNDEILREAMFY---NGVSVE--IRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAA 74 (325)
T ss_dssp --CCEEEEEESCCS----HHHHHHHHHHHHHHTTS---SSCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHH
T ss_pred CCCeEEEEEecCCC----HHHHHHHHHHHHHHHHc---CCcEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 35678999998722 23333333333321121 145554 4566667776666777778889998886443332
Q ss_pred -HHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHc--CCcEEEEEEecCC--CCcchHHH
Q 006916 104 -AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD--QGRNGVTA 178 (625)
Q Consensus 104 -~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~--~W~~v~ii~~d~~--~g~~~~~~ 178 (625)
.......+...++|+|......+ .. +.+....+++...+..+++.|... |.++|++|..+.. ......+.
T Consensus 75 ~~~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (325)
T 2x7x_A 75 PMTPIVEEAYQKGIPVILVDRKIL---SD--KYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQG 149 (325)
T ss_dssp HHHHHHHHHHHTTCCEEEESSCCS---SS--CSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCC---Cc--ceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHH
Confidence 22333445567999998754322 11 123344456666777777877664 8999999986532 33456788
Q ss_pred HHHHHhcc-ceEEEEeeecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCC
Q 006916 179 LGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGM 243 (625)
Q Consensus 179 l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~ 243 (625)
|.+.+++. |+.+.....-. .+..+....++++.+ ..++.|+ +.+...+..+++++++.|+
T Consensus 150 f~~al~~~pg~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~aI~-~~nd~~A~g~~~al~~~Gi 212 (325)
T 2x7x_A 150 FMAAISKFPDIKLIDKADAA----WERGPAEIEMDSMLRRHPKIDAVY-AHNDRIAPGAYQAAKMAGR 212 (325)
T ss_dssp HHHHHHTCTEEEEEEEEECT----TSHHHHHHHHHHHHHHCSCCCEEE-ESSTTHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCEEEeeecCC----CCHHHHHHHHHHHHHhCCCCCEEE-ECCCchHHHHHHHHHHcCC
Confidence 89999988 88765322111 123333444555433 2466665 4555667788899999985
No 89
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=98.00 E-value=0.00021 Score=71.11 Aligned_cols=209 Identities=10% Similarity=0.008 Sum_probs=129.5
Q ss_pred CceEEEEEEeec--C-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 006916 24 PEVLNVGAIFSF--G-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (625)
Q Consensus 24 ~~~i~IG~l~~~--~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~ 100 (625)
...-+||+++|. . ..+-.....+++-+.++. |+.+. +.++..++....+....++.+++.+||-...
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQLL--LADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--------TCEEE--EEECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 356789999996 2 222223445555444442 45554 4556666666666666777889988875433
Q ss_pred hHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHH
Q 006916 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 178 (625)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~ 178 (625)
......+...+...++|+|......+ +. .+.....++...+...++.|...|.+++++|..... ......+.
T Consensus 129 ~~~~~~~~~~~~~~~iPvV~~~~~~~---~~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 202 (338)
T 3dbi_A 129 FLSVDEIDDIIDAHSQPIMVLNRRLR---KN---SSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAG 202 (338)
T ss_dssp SSCHHHHHHHHHHCSSCEEEESSCCS---SS---GGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCCEEEEcCCCC---CC---CCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 32334566777888999998654332 11 122345566666777888888889999999976432 34456788
Q ss_pred HHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006916 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 179 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (625)
+.+.+++.|+.+.....+... .+...-...++++.+ ..++.|+ +.+...+..+++++++.|+..++-+-+
T Consensus 203 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~v 274 (338)
T 3dbi_A 203 YKDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPEQVSV 274 (338)
T ss_dssp HHHHHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHCCCCCCcceEEeCC--CCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEE
Confidence 999999998765422222211 223444455555543 3455555 455567778999999999876544433
No 90
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=97.99 E-value=0.00035 Score=67.74 Aligned_cols=209 Identities=10% Similarity=0.020 Sum_probs=125.4
Q ss_pred CCceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 006916 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (625)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s 101 (625)
.....+||+++|.. ..+-.....+++-+.++ .|+++.+ .++..++....+....++.+++.+||-....
T Consensus 13 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 82 (289)
T 2fep_A 13 SKKTTTVGVIIPDISSIFYSELARGIEDIATM--------YKYNIIL--SNSDQNMEKELHLLNTMLGKQVDGIVFMGGN 82 (289)
T ss_dssp ---CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 34567899999863 22222344555555544 1566544 4566666666666667777889888753322
Q ss_pred HHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecC-C--CCcchHHH
Q 006916 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD-D--QGRNGVTA 178 (625)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~-~--~g~~~~~~ 178 (625)
.....+. .+...++|+|......+ ... +.....++...+...++.|...|.++|++|.... . ......+.
T Consensus 83 ~~~~~~~-~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 155 (289)
T 2fep_A 83 ITDEHVA-EFKRSPVPIVLAASVEE---QEE---TPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQG 155 (289)
T ss_dssp CCHHHHH-HHHHSSSCEEEESCCCT---TCC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHH
T ss_pred CCHHHHH-HHHhcCCCEEEEccccC---CCC---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHH
Confidence 1222233 34467999998754322 111 2234456666778888888888999999998653 2 34567788
Q ss_pred HHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006916 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 179 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (625)
+.+.+++.|+.+.....+... .+..+-...++++.+. .++.|+ +.+...+..+++++++.|+..++-+-+
T Consensus 156 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di~v 227 (289)
T 2fep_A 156 YKRALEEANLPFNEQFVAEGD--YTYDSGLEALQHLMSLDKKPTAIL-SATDEMALGIIHAAQDQGLSIPEDLDI 227 (289)
T ss_dssp HHHHHHHTTCCCCGGGEEECC--SCHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHcCCCCChheEeeCC--CCHHHHHHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 999999988765321111111 1244444556665543 456555 455566888899999999865443333
No 91
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=97.99 E-value=0.00044 Score=67.05 Aligned_cols=197 Identities=11% Similarity=0.020 Sum_probs=119.7
Q ss_pred EEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC-hHHH
Q 006916 27 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS-AVMA 104 (625)
Q Consensus 27 i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~-s~~~ 104 (625)
.+||++.|.. ..+......+++.+.++. |+++. +.++..++....+....++.+++.++|.... ....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL--------GYEAT--IFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 4799999863 333334556666666552 45554 4566667777666777778889988886332 2222
Q ss_pred HHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEE-ccCchHHHHHHHHHHHHHc------CCcE--EEEEEecCC--CCc
Q 006916 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQ-TAPNDLYLMSAIAEMVSYF------GWGE--VIAIFNDDD--QGR 173 (625)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r-~~ps~~~~~~al~~ll~~~------~W~~--v~ii~~d~~--~g~ 173 (625)
......+...++|+|......+ +. +.+.. ...++...+..+++.|... |.++ ++++..... ...
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGIN---AR--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCS---CS--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCC---CC--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 2233445568999998754322 11 11222 4556666677778877766 8899 666664322 344
Q ss_pred chHHHHHHHHhcc-ceEEEEeeecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCC
Q 006916 174 NGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGM 243 (625)
Q Consensus 174 ~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~ 243 (625)
...+.|.+.+++. |+++.....-. .+..+....++++.+ ..+++|+ +.+...+..+++++++.|+
T Consensus 148 ~R~~gf~~~l~~~~g~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai~-~~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 148 DRSNGFHSVVDQYPEFKMVAQQSAE----FDRDTAYKVTEQILQAHPEIKAIW-CGNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEECT----TCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCC----CCHHHHHHHHHHHHHhCCCCcEEE-ECCchHHHHHHHHHHHCCC
Confidence 5678889999998 88764322111 123333445555433 2466665 4555667888999999887
No 92
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=97.98 E-value=0.0005 Score=66.81 Aligned_cols=208 Identities=10% Similarity=-0.042 Sum_probs=124.7
Q ss_pred CCceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 006916 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (625)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s 101 (625)
.....+||+++|.. ..+-.....+++.+.++. |+++. +.++..++....+....++.+++.+||.....
T Consensus 17 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 86 (293)
T 2iks_A 17 AGRTRSIGLVIPDLENTSYTRIANYLERQARQR--------GYQLL--IACSEDQPDNEMRCIEHLLQRQVDAIIVSTSL 86 (293)
T ss_dssp -CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred cCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC--------CCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 34567899999853 222223345555444441 55555 44555566665666667777889888753332
Q ss_pred HHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHH
Q 006916 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (625)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l 179 (625)
.....+...+...++|+|......+ +. .+.....++...+..+++.|...|.++|++|..... ......+.|
T Consensus 87 ~~~~~~~~~~~~~~iPvV~~~~~~~---~~---~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 160 (293)
T 2iks_A 87 PPEHPFYQRWANDPFPIVALDRALD---RE---HFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGF 160 (293)
T ss_dssp CTTCHHHHTTTTSSSCEEEEESCCC---TT---TCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHH
T ss_pred CCcHHHHHHHHhCCCCEEEECCccC---cC---CCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHH
Confidence 2112233445667999998754322 11 123344566666777888888889999999987532 234567889
Q ss_pred HHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006916 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 180 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (625)
.+.+++.|+.......-. .+..+-...++++.+. .++.|+ +.+...+..+++++++.|+..++-+-+
T Consensus 161 ~~~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 229 (293)
T 2iks_A 161 RTAWKDDPREVHFLYANS----YEREAAAQLFEKWLETHPMPQALF-TTSFALLQGVMDVTLRRDGKLPSDLAI 229 (293)
T ss_dssp HHHHTTCCCCEEEEEESS----SCHHHHHHHHHHHTTTSCCCSEEE-ESSHHHHHHHHHHHHHHHSSCCSSCEE
T ss_pred HHHHHHcCCCccEEEcCC----CChhhHHHHHHHHHhcCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEE
Confidence 999999887433221111 1244444556665444 355555 445566888899999988765544433
No 93
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=97.97 E-value=0.00094 Score=66.74 Aligned_cols=212 Identities=12% Similarity=0.010 Sum_probs=131.5
Q ss_pred eEEEEEEeecCC--CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh--cCcEEEEcCCCh
Q 006916 26 VLNVGAIFSFGT--VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME--TDTLAIVGPQSA 101 (625)
Q Consensus 26 ~i~IG~l~~~~~--~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~--~~v~aviG~~~s 101 (625)
..+||+++|... .+-.....+++-+.++. |+++.+ .+...++..-.+...+++. +++.+||-....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~--------g~~~~~--~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~ 72 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL--------GLDLRI--LYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ 72 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch
Confidence 468999999743 23335566776666664 455554 4666777777778888888 588877753333
Q ss_pred HHHHHHHHhhhcCCCcEEeeccCCCCCCC-------CCCC-ceEEccCchHHHHHHHHHHHHHcC------C-cEEEEEE
Q 006916 102 VMAHVLSHLANELQVPLLSFTALDPTLSP-------LQYP-FFVQTAPNDLYLMSAIAEMVSYFG------W-GEVIAIF 166 (625)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~-------~~~~-~~~r~~ps~~~~~~al~~ll~~~~------W-~~v~ii~ 166 (625)
.....+...+...+||+|......+.... ..|+ ++....+++...+..+++.|...+ - ++++++.
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~ 152 (350)
T 3h75_A 73 YVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFS 152 (350)
T ss_dssp SHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEE
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEe
Confidence 34455556677889999987655443221 1122 245566777777888888877765 4 8999987
Q ss_pred ecCC--CCcchHHHHHHHHhccce-EEEEeeecCCCCCCChhHHHHHHHHHhcCCceE-EEEEcchhhHHHHHHHHHHcC
Q 006916 167 NDDD--QGRNGVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRMMEARV-IVVHGYSRTGLMVFDVAQRLG 242 (625)
Q Consensus 167 ~d~~--~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~v-Ivl~~~~~~~~~il~~a~~~g 242 (625)
.... ......+.+.+.+++.|. .+... +... .+.+.....++++.+..+++ .|++.+...+..+++++++.|
T Consensus 153 g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G 228 (350)
T 3h75_A 153 GLKVTPAAQLRERGLRRALAEHPQVHLRQL--VYGE--WNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELG 228 (350)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHCTTEEEEEE--EECT--TCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCeEEEEE--eeCC--CcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcC
Confidence 6432 334567889999998885 22222 2221 22444445555554433332 234456667888999999999
Q ss_pred CCCCCeEEE
Q 006916 243 MMDSGYVWI 251 (625)
Q Consensus 243 ~~~~~~~~i 251 (625)
+..++-+-+
T Consensus 229 ~~vP~di~v 237 (350)
T 3h75_A 229 RKPGTDLLF 237 (350)
T ss_dssp CCBTTTBEE
T ss_pred CCCCCCeEE
Confidence 865543333
No 94
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=97.96 E-value=0.00075 Score=65.63 Aligned_cols=199 Identities=10% Similarity=0.076 Sum_probs=121.9
Q ss_pred eEEEEEEeec-CCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHH
Q 006916 26 VLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (625)
Q Consensus 26 ~i~IG~l~~~-~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~ 104 (625)
..+||++ +. +..+-.....+++- .+++.+- .|.++.+.+.|+..++....+....+.++++.+||... +...
T Consensus 2 ~~~Igvi-~~~~~p~~~~i~~gi~~---~l~~~gy--~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~-~~~~ 74 (295)
T 3lft_A 2 NAKIGVL-QFVSHPSLDLIYKGIQD---GLAEEGY--KDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIA-TPAA 74 (295)
T ss_dssp CEEEEEE-ECSCCHHHHHHHHHHHH---HHHHTTC--CGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEES-HHHH
T ss_pred ceEEEEE-EccCChhHHHHHHHHHH---HHHHcCC--CCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECC-cHHH
Confidence 4679988 53 22211223344433 3444432 35688888899999988877777778888998888743 2222
Q ss_pred HHHHHhhhcCCCcEEeeccCCCCCCC------CCCCceEEccCchHHHHHHHHHHHHHc--CCcEEEEEEecCCC-Ccch
Q 006916 105 HVLSHLANELQVPLLSFTALDPTLSP------LQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDDQ-GRNG 175 (625)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~------~~~~~~~r~~ps~~~~~~al~~ll~~~--~W~~v~ii~~d~~~-g~~~ 175 (625)
..+.. ...++|+|..+..++.... .....+.... +..-+...++++... |-+++++|+.+... +...
T Consensus 75 ~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r 150 (295)
T 3lft_A 75 QGLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQ 150 (295)
T ss_dssp HHHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHH
T ss_pred HHHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHH
Confidence 22322 2478999976554442211 0112333332 222245566777776 89999999976542 4456
Q ss_pred HHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCC
Q 006916 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 243 (625)
Q Consensus 176 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~ 243 (625)
.+.+++.+++.|+.+....... ..+....++++.. ++++|+...+ ..+...++++.+.+.
T Consensus 151 ~~g~~~al~~~gi~~~~~~~~~------~~~~~~~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 151 VEEFKAYAEKAGLTVETFAVPS------TNEIASTVTVMTS-KVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHHTTCEEEEEEESS------GGGHHHHHHHHTT-TCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHcCCEEEEEecCC------HHHHHHHHHHHHh-cCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 7889999999999876543221 3466677777764 6788776544 345555666766663
No 95
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=97.95 E-value=0.00031 Score=68.65 Aligned_cols=205 Identities=8% Similarity=-0.084 Sum_probs=126.5
Q ss_pred ceEEEEEEeecCC-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChH
Q 006916 25 EVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAV 102 (625)
Q Consensus 25 ~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG-~~~s~ 102 (625)
+..+||+++|... .+-.....+++-+.++. |+++.+...+...++....+....++.+++.+||- |....
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--------GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--------TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 5679999999642 22234455666555553 45655544333337777777777888888888873 43333
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcC-----CcEEEEEEecC--CCCcch
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG-----WGEVIAIFNDD--DQGRNG 175 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~-----W~~v~ii~~d~--~~g~~~ 175 (625)
........+. .++|+|......+.......+.+....+++...+...++.|...+ -++|+++.... ......
T Consensus 76 ~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R 154 (304)
T 3o1i_D 76 AYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPV 154 (304)
T ss_dssp SSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHH
T ss_pred HHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHH
Confidence 2122233445 899999874433211111234556667777778888888988888 88999997543 234567
Q ss_pred HHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHh-cCCceEEEEEcchhhHHHHHHHHHHcCCC
Q 006916 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR-MMEARVIVVHGYSRTGLMVFDVAQRLGMM 244 (625)
Q Consensus 176 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~-~~~~~vIvl~~~~~~~~~il~~a~~~g~~ 244 (625)
.+.+.+.+++.|+++.... ... .+.......++++. ...+++ | +++...+..+++++++.|+.
T Consensus 155 ~~gf~~~l~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 155 TTGFYEAIKNSDIHIVDSF--WAD--NDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHTTTTBTEEEEECC--CCC--SCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHhcCCCEEEEee--cCC--CcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 8899999999998876432 211 22333334444332 335667 4 45667788889999988864
No 96
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=97.92 E-value=0.00073 Score=66.08 Aligned_cols=204 Identities=9% Similarity=0.002 Sum_probs=122.0
Q ss_pred EEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC-ChHHH
Q 006916 27 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ-SAVMA 104 (625)
Q Consensus 27 i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~-~s~~~ 104 (625)
-+||+++|.. ..+......+++.+.++ . |+ +.+.+.++..++....+....++.+++.+||-.. .....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~---~-----g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKA---A-----PD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHT---C-----TT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHh---c-----CC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh
Confidence 5799999863 22222334444444443 2 44 2344566666776666667777788898887633 33323
Q ss_pred HHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHH------------cCCcEEEEEEecCC--
Q 006916 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY------------FGWGEVIAIFNDDD-- 170 (625)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~------------~~W~~v~ii~~d~~-- 170 (625)
......+...++|+|......+...-..++.+.....++...+..+++.|.. .|-++|++|.....
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 3344455668999998754321100011234556667777777878888766 67889999986432
Q ss_pred CCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC----CceEEEEEcchhhHHHHHHHHHHcC
Q 006916 171 QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM----EARVIVVHGYSRTGLMVFDVAQRLG 242 (625)
Q Consensus 171 ~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~----~~~vIvl~~~~~~~~~il~~a~~~g 242 (625)
......+.|.+.+++.|+.+.....+... .+.......++++.+. .++.|+ +.+...+..+++++++.|
T Consensus 154 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 154 DAEARTTYVIKELNDKGIKTEQLQLDTAM--WDTAQAKDKMDAWLSGPNANKIEVVI-ANNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECT--TCHHHHHHHHHHHHTSTTGGGCCEEE-ESSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEEecCC--CCHHHHHHHHHHHHHhCCCCCccEEE-ECCchhHHHHHHHHHHcC
Confidence 34456788899999988765432222211 1234444555655443 456555 455566788899999887
No 97
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.92 E-value=6.8e-05 Score=72.26 Aligned_cols=203 Identities=12% Similarity=0.029 Sum_probs=112.0
Q ss_pred EEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHHHH
Q 006916 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (625)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~~~ 106 (625)
+||+++|.. ..+-.....+++-+.++ . |+++. +.++..++....+....++.+++.++|........ .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~---~-----g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~ 69 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLE---Q-----RYDLA--LFPILSLARLKRYLENTTLAYLTDGLILASYDLTE-R 69 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGG---G-----TCEEE--ECCCCSCCCCC---------CCCSEEEEESCCCC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHH---C-----CCEEE--EEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-H
Confidence 489998853 22212233444433333 1 45544 45554444433444555667788887753322222 2
Q ss_pred HHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecC-C-----CCc-chHHHH
Q 006916 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD-D-----QGR-NGVTAL 179 (625)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~-~-----~g~-~~~~~l 179 (625)
....+...++|+|......+ + +.....++...+..+++.|...|-+++++|..+. . ... ...+.+
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp ----CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 33445567999998754322 1 3345556667778888888888999999998754 3 344 567889
Q ss_pred HHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCC--ceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 180 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
.+.+++.|+.+.....+... .+..+....++++.+.. ++.|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 142 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 213 (276)
T 2h0a_A 142 QEALKEAGRPFSPDRLYITR--HSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRVL 213 (276)
T ss_dssp HHHHHHTTCCCCGGGEEEEC--SSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEEE
T ss_pred HHHHHHcCCCCChHHeeecC--CChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 99999988764321111111 12344445566655443 56655 5566678889999999998655544443
No 98
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=97.92 E-value=0.00035 Score=67.01 Aligned_cols=205 Identities=10% Similarity=-0.044 Sum_probs=125.9
Q ss_pred EEEEEEeecCC-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHHH
Q 006916 27 LNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (625)
Q Consensus 27 i~IG~l~~~~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~~ 105 (625)
-+||+++|... .+-.....+++-+.++. |+++.+ .++..++....+....++.+++.++|-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR--------GYQLLI--ASSDDQPDSERQLQQLFRARRCDALFVASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccH
Confidence 47999999743 22223455555555541 566654 45556666666666677778888877533221122
Q ss_pred HHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHHHHH
Q 006916 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKL 183 (625)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l~~~l 183 (625)
.....+...++|+|......+ +.. +-....++...+..+++.|...|-++++++..... ......+.+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 73 DSYRELQDKGLPVIAIDRRLD---PAH---FCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp CHHHHHHHTTCCEEEESSCCC---TTT---CEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEccCCC---ccc---cCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 333455667999998754332 111 23344566667788888888889999999987543 3445678899999
Q ss_pred hccceEEEEeeecCCCCCCChhHHHHHHHHHhcC---CceEEEEEcchhhHHHHHHHHHHcCCCCCC-eEEEee
Q 006916 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIAT 253 (625)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~---~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~ 253 (625)
++.|+.+.....-.. +..+....++++.+. .++.|+ +.+...+..+++++++.|+ .++ ...+..
T Consensus 147 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~-vp~di~vvg~ 214 (272)
T 3o74_A 147 QGYTGEVRRYQGEAF----SRECGQRLMQQLIDDLGGLPDALV-TTSYVLLQGVFDTLQARPV-DSRQLQLGTF 214 (272)
T ss_dssp TTCCSEEEEEEESSS----SHHHHHHHHHHHHHHHTSCCSEEE-ESSHHHHHHHHHHHHTSCG-GGCCCEEEEE
T ss_pred HHcCCChheeecCCC----CHHHHHHHHHHHHhcCCCCCcEEE-EeCchHHHHHHHHHHHcCC-CccceEEEEe
Confidence 999987654332221 244444445444332 366654 4566678889999999997 443 334433
No 99
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=97.91 E-value=0.00077 Score=64.67 Aligned_cols=207 Identities=11% Similarity=0.013 Sum_probs=122.2
Q ss_pred eEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHH
Q 006916 26 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (625)
Q Consensus 26 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~ 104 (625)
.-+||+++|.. ..+-.....+++.+.++. |+++.+ .++..++....+....++.+++.++|-.......
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 72 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA--------GYQLLL--GYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQ 72 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT--------SCEECC--EECTTCHHHHHHHHHHHHTSCCCCEEEESSCCCH
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC--------CCEEEE--EcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCH
Confidence 45799999863 222223445555554441 455543 4555566655556666777788776642221112
Q ss_pred HHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHHHH
Q 006916 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDK 182 (625)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l~~~ 182 (625)
. ....+...++|+|......+ + +.+.....++...+..+++.|...|.++|++|..+.. ......+.|.+.
T Consensus 73 ~-~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~ 145 (275)
T 3d8u_A 73 R-THQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSA 145 (275)
T ss_dssp H-HHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHH
T ss_pred H-HHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHH
Confidence 2 23334557999998744321 1 2234455666667788888888889999999986533 344567888999
Q ss_pred HhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 183 l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
+++.|+.+.....+... .+..+....++++.+. .+++|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 146 l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 214 (275)
T 3d8u_A 146 MIENYLTPDHFLTTHEA--PSSQLGAEGLAKLLLRDSSLNALV-CSHEEIAIGALFECHRRVLKVPTDIAII 214 (275)
T ss_dssp HHHTTCCCCCEEECSSC--CCHHHHHHHHHHHHTTCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHcCCCCCccEEEeCC--CChhHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99988754322222211 2244444555555443 356655 4555678888999999998655444443
No 100
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=97.91 E-value=0.00031 Score=68.16 Aligned_cols=208 Identities=9% Similarity=-0.039 Sum_probs=121.3
Q ss_pred CceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHH---HHHHHHhcCcEEEEcCC
Q 006916 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM---GALQFMETDTLAIVGPQ 99 (625)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~---~~~~l~~~~v~aviG~~ 99 (625)
....+||++.|.. ..+......+++-+.++. |+++. +.++..++....+ ....++.+++.+||-..
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAV--------HRHVV--VATGCGESTPREQALEAVRFLIGRDCDGVVVIS 75 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EECCCSSSCHHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--------CCEEE--EEeCCCchhhhhhHHHHHHHHHhcCccEEEEec
Confidence 3567899999863 222223445555555441 56654 3455555544444 55566777898887533
Q ss_pred ChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHH
Q 006916 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVT 177 (625)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~ 177 (625)
.......+ ..+...++|+|......+ + +.+.....++...+..+++.|...|-++|++|..... ......+
T Consensus 76 ~~~~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 148 (290)
T 2rgy_A 76 HDLHDEDL-DELHRMHPKMVFLNRAFD---A---LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLD 148 (290)
T ss_dssp SSSCHHHH-HHHHHHCSSEEEESSCCT---T---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHH
T ss_pred CCCCHHHH-HHHhhcCCCEEEEccccC---C---CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHH
Confidence 22222223 334457999998754322 1 1223345666667788888888889999999986532 2345677
Q ss_pred HHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006916 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 178 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (625)
.+.+.+++.|+.+.....+... .+..+-...++++.+ ..++.|+ +.+...+..+++++++.|+..++-+-+
T Consensus 149 Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di~v 221 (290)
T 2rgy_A 149 GFFDELARHGIARDSVPLIESD--FSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISVPGDVSV 221 (290)
T ss_dssp HHHHHHHTTTCCGGGSCEEECC--SSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHHcCCCCCcccEEecC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 8889999988754321111111 123333344444433 3566666 455667888999999999865543333
No 101
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=97.90 E-value=0.00037 Score=68.07 Aligned_cols=214 Identities=9% Similarity=0.010 Sum_probs=125.8
Q ss_pred CCceEEEEEEeecC--CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe-cCCCChHHHHHHHHHHHhcCcEEEEc-C
Q 006916 23 KPEVLNVGAIFSFG--TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMH-DAKFNGFLSIMGALQFMETDTLAIVG-P 98 (625)
Q Consensus 23 ~~~~i~IG~l~~~~--~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~-D~~~~~~~a~~~~~~l~~~~v~aviG-~ 98 (625)
.....+||+++|.. ..+-.....+++-+.++. +|+.+.+... +...++..-.+....++.+++.+||- +
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-------~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 77 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTY-------SDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAP 77 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHT-------GGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECC
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHH-------HhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 44678999999984 333334455665555553 1455665554 34456666666666777889988875 3
Q ss_pred CChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCC--cEEEEEEec------CC
Q 006916 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGW--GEVIAIFND------DD 170 (625)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W--~~v~ii~~d------~~ 170 (625)
............+...++|+|......+.. +.+-...++....+..+++.|...|- ++|++|..+ ..
T Consensus 78 ~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~ 152 (304)
T 3gbv_A 78 TVPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSN 152 (304)
T ss_dssp SSGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCH
T ss_pred CChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccch
Confidence 333333344455566799999875433211 12334456677778888888888887 999999843 12
Q ss_pred CCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCCe
Q 006916 171 QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 248 (625)
Q Consensus 171 ~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~ 248 (625)
......+.+.+.+++.|..+......... .+.......++++.+ .++++|+...+. +..+++++++.|+ .+.
T Consensus 153 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~~~g~--~di 226 (304)
T 3gbv_A 153 QQESREIGFRQYMQEHHPACNILELNLHA--DLNIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQQRRK--SDF 226 (304)
T ss_dssp HHHHHHHHHHHHHHHHCTTSEEEEEEEES--SCSSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHHHTTC--CSC
T ss_pred hHHHHHHHHHHHHHhhCCCcEEEEeeecC--CCHHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHHHcCC--CCc
Confidence 33456788899998887543222111111 011122233333322 256776655544 7789999999997 344
Q ss_pred EEEeeC
Q 006916 249 VWIATT 254 (625)
Q Consensus 249 ~~i~~~ 254 (625)
..+..+
T Consensus 227 ~vig~d 232 (304)
T 3gbv_A 227 SLIGYD 232 (304)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 444433
No 102
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=97.90 E-value=0.0022 Score=61.84 Aligned_cols=197 Identities=11% Similarity=0.092 Sum_probs=117.1
Q ss_pred EEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChHHH
Q 006916 27 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMA 104 (625)
Q Consensus 27 i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG-~~~s~~~ 104 (625)
.+||++.|.. ..+......+++.+.++. |+.+. +.++..++....+....++++++.+||- |......
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 71 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKEL--------GYKII--VEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAV 71 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTT
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhc--------CcEEE--EecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhh
Confidence 3689998863 222234456666666553 45543 4566667766666677778888988764 4333322
Q ss_pred HHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHc-C-CcEEEEEEecCC--CCcchHHHHH
Q 006916 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-G-WGEVIAIFNDDD--QGRNGVTALG 180 (625)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~-~-W~~v~ii~~d~~--~g~~~~~~l~ 180 (625)
......+...++|+|......+ +. +.+.....++...+...++.|... | -+++++|..... ......+.+.
T Consensus 72 ~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~ 146 (283)
T 2ioy_A 72 VTAIKEANSKNIPVITIDRSAN---GG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFD 146 (283)
T ss_dssp HHHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEecCCCC---Cc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHH
Confidence 2233445667999998754221 11 112233445555677777777665 5 899999986432 2345577888
Q ss_pred HHHhcc-ceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCC
Q 006916 181 DKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGM 243 (625)
Q Consensus 181 ~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~ 243 (625)
+.+++. |+.+.....-. .+..+-...++++.+. .++.| ++.+...+..+++++++.|+
T Consensus 147 ~al~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~G~ 207 (283)
T 2ioy_A 147 EAIAKYPDIKIVAKQAAD----FDRSKGLSVMENILQAQPKIDAV-FAQNDEMALGAIKAIEAANR 207 (283)
T ss_dssp HHHTTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCSCCCEE-EESSHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCEEEeeccCC----CCHHHHHHHHHHHHHhCCCccEE-EECCchHHHHHHHHHHHCCC
Confidence 999888 88764322111 1234444455554432 34544 45555678888999999987
No 103
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=97.90 E-value=0.00071 Score=66.16 Aligned_cols=209 Identities=10% Similarity=0.027 Sum_probs=122.8
Q ss_pred eEEEEEEeecCC-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh-HH
Q 006916 26 VLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA-VM 103 (625)
Q Consensus 26 ~i~IG~l~~~~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s-~~ 103 (625)
+++||++.|... .+......+++.+.++. |+++. +.++..++....+....++.+++.+||..... ..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--------GITLK--IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG 71 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 478999999742 22334455666555553 45554 45666676666666667777889888763332 21
Q ss_pred HHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcC---CcEEEEEEecCC--CCcchHHH
Q 006916 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG---WGEVIAIFNDDD--QGRNGVTA 178 (625)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~---W~~v~ii~~d~~--~g~~~~~~ 178 (625)
.......+...++|+|......+.. ...+++.....++...+..+++.|...| -++|++|..... ......+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 72 WEPVLKEAKDAEIPVFLLDRSIDVK--DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCCCS--CGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCC--CccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 1223344556799999875433211 1001234455666666777777777665 789999986432 23456778
Q ss_pred HHHHHhccce-EEEEeeecCCCCCCChhHHHHHHHHHhc-----CCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006916 179 LGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 179 l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~i~~-----~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (625)
|++.+++.|. ++.... ... .+..+....++++.+ ..++.|+. .+...+..+++++++.|+..++-+-+
T Consensus 150 f~~al~~~g~~~~~~~~--~~~--~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~v 223 (306)
T 2vk2_A 150 FAEAIKNAPNIKIIRSQ--SGD--FTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQAIKEAGLKPGKDILT 223 (306)
T ss_dssp HHHHTTTCTTEEEEEEE--ECT--TCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEE
T ss_pred HHHHHhhCCCeEEEEec--cCC--CcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHHHcCCCCCCCeEE
Confidence 8899988885 332211 111 123333344444433 24566554 45566788999999999865543333
No 104
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=97.89 E-value=0.0017 Score=63.32 Aligned_cols=211 Identities=13% Similarity=-0.015 Sum_probs=129.4
Q ss_pred eEEEEEEeecCC-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChHH
Q 006916 26 VLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 103 (625)
Q Consensus 26 ~i~IG~l~~~~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG-~~~s~~ 103 (625)
.-+||++.+... .+-.....+++-+.++. |+++.+. .++..++....+....++.+++.+||- +.....
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 74 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL--------NVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVE 74 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH--------TCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc--------CCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 457999988743 22334566676666663 4666542 466667777777777788889988874 333332
Q ss_pred HHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHc--CCcEEEEEEecCC-CCcchHHHHH
Q 006916 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD-QGRNGVTALG 180 (625)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~--~W~~v~ii~~d~~-~g~~~~~~l~ 180 (625)
.......+...++|+|......+. . +.+....+++...+..+++.|... |-++|+++..... ......+.+.
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~ 149 (305)
T 3g1w_A 75 LTDTINKAVDAGIPIVLFDSGAPD---S--HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFK 149 (305)
T ss_dssp THHHHHHHHHTTCCEEEESSCCTT---S--CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEECCCCCC---C--ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHH
Confidence 333445556679999987554321 1 122344566777788888888887 9999999986432 2334567788
Q ss_pred HHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeC
Q 006916 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (625)
Q Consensus 181 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (625)
+.+++.|..+.....+... .+.......++++.+. ++++| ++.+...+..+++++++.|+. .+...+..+
T Consensus 150 ~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~-~di~vig~d 221 (305)
T 3g1w_A 150 ETLEAEFPAIEVIAVEDGR--GDSLHSRRVAHQLLEDYPNLAGI-FATEANGGVGVGDAVRLESRA-GEIQIISFD 221 (305)
T ss_dssp HHHHHHCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTEEEE-EESSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred HHHHhhCCCCEEEEEecCC--CCHHHHHHHHHHHHHhCCCceEE-EECCCcchhhHHHHHHhcCCC-CCeEEEEeC
Confidence 8888876554433222222 2344444555554433 34444 345566788899999999976 444444443
No 105
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=97.89 E-value=0.00045 Score=68.54 Aligned_cols=209 Identities=9% Similarity=-0.005 Sum_probs=124.2
Q ss_pred CceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChH
Q 006916 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (625)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~ 102 (625)
....+||+++|.. ..+......+++.+.++ .|+.+.+ .++..++....+....++.+++.++|......
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 130 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASM--------YKYNMIL--ANSDNDVEKEEKVLETFLSKQVDGIVYMGSSL 130 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECSSCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EECCCChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 3467899999863 22222344555555544 1566554 45556666555566667778898887533221
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHH
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALG 180 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l~ 180 (625)
....+.. +...++|+|......+ +..+ .....++...+...++.|...|-++|++|..+.. ......+.|.
T Consensus 131 ~~~~~~~-l~~~~iPvV~~~~~~~---~~~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 203 (332)
T 2o20_A 131 DEKIRTS-LKNSRTPVVLVGTIDG---DKEI---PSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQ 203 (332)
T ss_dssp CHHHHHH-HHHHCCCEEEESCCCT---TSCS---CEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHH
T ss_pred CHHHHHH-HHhCCCCEEEEccccC---CCCC---CEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHH
Confidence 1222333 3467999998754322 1112 2344556666777888888889999999986532 2445677889
Q ss_pred HHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 181 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
+.+++.|+.+.....+... .+..+-...++++.+..++.|+. .+...+..+++++++.|+..++-+-+.
T Consensus 204 ~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvi 272 (332)
T 2o20_A 204 EALLEANIEFDENLVFEGN--YSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEII 272 (332)
T ss_dssp HHHHHTTCCCCGGGEECSC--CSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEEE
Confidence 9999988765321112211 12333334444443336777665 455677889999999998655444443
No 106
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=97.89 E-value=0.00088 Score=64.97 Aligned_cols=202 Identities=10% Similarity=0.029 Sum_probs=123.7
Q ss_pred CCceEEEEEEeecCC-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCC
Q 006916 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQS 100 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG-~~~ 100 (625)
.....+||+++|... .+-.....+++-+.++. |+++. +.++..++....+....++.+++.+||- +..
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 74 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--------KYEAL--VATSQNSRISEREQILEFVHLKVDAIFITTLD 74 (293)
T ss_dssp ----CEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EEECSSCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 345678999998642 22223445555555542 45554 4566667777677777788888887775 333
Q ss_pred hHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHH-c-CCc-----EEEEEEecCC--C
Q 006916 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-F-GWG-----EVIAIFNDDD--Q 171 (625)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~-~-~W~-----~v~ii~~d~~--~ 171 (625)
..........+...++|+|......+. .+.+.....++...+..+++.|.. . |-+ +|++|..... .
T Consensus 75 ~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~ 149 (293)
T 3l6u_A 75 DVYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYT 149 (293)
T ss_dssp TTTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHH
T ss_pred hHHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCch
Confidence 333334445566779999987544331 112344456666677777777766 5 666 9999985432 3
Q ss_pred CcchHHHHHHHHhcc-ceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCC
Q 006916 172 GRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMM 244 (625)
Q Consensus 172 g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~ 244 (625)
.....+.+.+.+++. |+.+.....-. .+..+....++++.+. ++++| ++.+...+..+++++++.|+.
T Consensus 150 ~~~R~~gf~~~l~~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 150 TNERHRGFLKGIENEPTLSIVDSVSGN----YDPVTSERVMRQVIDSGIPFDAV-YCHNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEEECT----TCHHHHHHHHHHHHHTTCCCSEE-EESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCcEEeeeccCC----CCHHHHHHHHHHHHHhCCCCCEE-EECCchHHHHHHHHHHhCCCC
Confidence 445678899999998 98876543222 2244545555555443 34544 445566678899999999864
No 107
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=97.87 E-value=0.00041 Score=67.19 Aligned_cols=205 Identities=8% Similarity=-0.036 Sum_probs=121.4
Q ss_pred ceEEEEEEeec-----CCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC
Q 006916 25 EVLNVGAIFSF-----GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ 99 (625)
Q Consensus 25 ~~i~IG~l~~~-----~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~ 99 (625)
..-+||+++|. ...+-.....+++.+.++. |+++. +.++..++....+....++.+++.++|...
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 72 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV--------NYFVL--PFPFSEDRSQIDIYRDLIRSGNVDGFVLSS 72 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT--------TCEEE--ECCCCSSTTCCHHHHHHHHTTCCSEEEECS
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHc--------CCEEE--EEeCCCchHHHHHHHHHHHcCCCCEEEEee
Confidence 34589999986 3333345556666666552 55554 345444444334445566677898887533
Q ss_pred ChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHH
Q 006916 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVT 177 (625)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~ 177 (625)
....... ...+...++|+|......+ +... .....++...+...++.|...|-++|++|..... ......+
T Consensus 73 ~~~~~~~-~~~l~~~~iPvV~~~~~~~---~~~~---~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 145 (287)
T 3bbl_A 73 INYNDPR-VQFLLKQKFPFVAFGRSNP---DWDF---AWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQ 145 (287)
T ss_dssp CCTTCHH-HHHHHHTTCCEEEESCCST---TCCC---CEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHH
T ss_pred cCCCcHH-HHHHHhcCCCEEEECCcCC---CCCC---CEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHH
Confidence 2211222 3344567999998754322 1112 2344556666777888887789999999986532 2445677
Q ss_pred HHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc-C---CceEEEEEcchhhHHHHHHHHHHcCCCCCCeE
Q 006916 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-M---EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 249 (625)
Q Consensus 178 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~-~---~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~ 249 (625)
.|.+.+++.|+.+.....+... .+..+-...++++.+ . .++.|+ +.+...+..+++++++.|+..++-+
T Consensus 146 Gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~vP~di 218 (287)
T 3bbl_A 146 GYLEAMQTAQLPIETGYILRGE--GTFEVGRAMTLHLLDLSPERRPTAIM-TLNDTMAIGAMAAARERGLTIGTDL 218 (287)
T ss_dssp HHHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSCTTTSCSEEE-ESSHHHHHHHHHHHHHTTCCBTTTB
T ss_pred HHHHHHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHHhhCCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCCE
Confidence 8899999988764321111111 123444455666544 3 456655 4555678888999999998654433
No 108
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.85 E-value=0.00018 Score=69.85 Aligned_cols=208 Identities=14% Similarity=0.053 Sum_probs=113.7
Q ss_pred CceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChH
Q 006916 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (625)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~ 102 (625)
....+||+++|.. ..+......+++.+.++ . |+++.+. +++..++....+....++.+++.++|......
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~----~----g~~~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 76 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHK----N----GYNLIIV-YSGSADPEEQKHALLTAIERPVMGILLLSIAL 76 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHT----T----TCEEEEE-C----------CHHHHHHSSCCSEEEEESCC-
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHH----c----CCeEEEE-eCCCCCHHHHHHHHHHHHhcCCCEEEEecccC
Confidence 3567899999853 22222334444444433 2 5565442 15544554444455566777888887533222
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecC--CCCcchHHHHH
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALG 180 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~--~~g~~~~~~l~ 180 (625)
... ....+...++|+|......+. + +.....++...+..+++.|...|-++|++|..+. .......+.|.
T Consensus 77 ~~~-~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 148 (290)
T 3clk_A 77 TDD-NLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYK 148 (290)
T ss_dssp ----CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHH
T ss_pred CHH-HHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHH
Confidence 222 233445689999987543221 1 3344566777778888888888999999998642 34456678899
Q ss_pred HHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006916 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 181 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (625)
+.+++.|+.+.....+... .+..+-...++++.+ .+++.|+. .+...+..+++++++.|+..++-+-+
T Consensus 149 ~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~v 217 (290)
T 3clk_A 149 KALKEANIAINQEWIKPGD--YSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEVPKDLSI 217 (290)
T ss_dssp HHHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHcCCCCCcceEEcCC--CChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999988765321111111 123444455555543 34566554 45566788899999999765543333
No 109
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=97.85 E-value=0.00088 Score=65.41 Aligned_cols=211 Identities=10% Similarity=-0.010 Sum_probs=122.6
Q ss_pred ceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChH
Q 006916 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAV 102 (625)
Q Consensus 25 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG-~~~s~ 102 (625)
++++||+++|.. ..+-.....+++-+.++. |+++ .+.++ .++..-.+....++.+++.+||- |....
T Consensus 1 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~ 69 (306)
T 8abp_A 1 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEV--IKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPK 69 (306)
T ss_dssp -CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEE--EEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEE--EEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCch
Confidence 368999999964 222334566666666664 4555 35565 47777777777888888988764 44444
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHH-HcCC-----cEEEEEE-ecC--CCCc
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGW-----GEVIAIF-NDD--DQGR 173 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~-~~~W-----~~v~ii~-~d~--~~g~ 173 (625)
........+...++|+|......+.......+.+.....++...+...++.|. +.|- .+++++. ... ....
T Consensus 70 ~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~ 149 (306)
T 8abp_A 70 LGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTAR 149 (306)
T ss_dssp GHHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHH
T ss_pred hhHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHH
Confidence 44444455677899999876432221111011222333455555555555543 3233 3888886 332 2334
Q ss_pred chHHHHHHHHhccce---EEEEeeecCCCCCCChhHHHHHHHHHhcCC--ceE-EEEEcchhhHHHHHHHHHHcCCCCCC
Q 006916 174 NGVTALGDKLAEIRC---KISYKSALPPDQSVTETDVRNELVKVRMME--ARV-IVVHGYSRTGLMVFDVAQRLGMMDSG 247 (625)
Q Consensus 174 ~~~~~l~~~l~~~g~---~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~v-Ivl~~~~~~~~~il~~a~~~g~~~~~ 247 (625)
...+.+.+.+++.|. ++..... .. .+.......++++.+.. ++. +|++.+...+..+++++++.|+.. +
T Consensus 150 ~R~~Gf~~~l~~~g~~~~~~~~~~~--~~--~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v-~ 224 (306)
T 8abp_A 150 RRTTGSMDALKAAGFPEKQIYQVPT--KS--NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA-A 224 (306)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEEC--SS--SSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCG-G
T ss_pred HHHHHHHHHHHhcCCCCcEEEeecc--CC--CChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCC-C
Confidence 567888889988764 2332221 11 23445555666655544 445 355666677888999999999754 3
Q ss_pred eEEE
Q 006916 248 YVWI 251 (625)
Q Consensus 248 ~~~i 251 (625)
.+-+
T Consensus 225 di~v 228 (306)
T 8abp_A 225 DIIG 228 (306)
T ss_dssp GEEE
T ss_pred ceEE
Confidence 3433
No 110
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.84 E-value=0.00077 Score=65.34 Aligned_cols=210 Identities=12% Similarity=0.031 Sum_probs=125.4
Q ss_pred CCceEEEEEEeec-----C-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE
Q 006916 23 KPEVLNVGAIFSF-----G-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV 96 (625)
Q Consensus 23 ~~~~i~IG~l~~~-----~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~avi 96 (625)
....-+||+++|. . ..+-.....+++-+.++. |+++. +.++..++....+....+..+++.+||
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~~~~~~vdgiI 74 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--------GYALY--MSTGETEEEIFNGVVKMVQGRQIGGII 74 (292)
T ss_dssp --CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--------TCEEE--ECCCCSHHHHHHHHHHHHHTTCCCEEE
T ss_pred cCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--------CCEEE--EEeCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 3456789999997 2 222223445555554442 45554 455555444444444455567888877
Q ss_pred cCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcc
Q 006916 97 GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRN 174 (625)
Q Consensus 97 G~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~ 174 (625)
-....... .....+...++|+|......+.. +.+.....+....+...++.|...|-++|+++..... ....
T Consensus 75 i~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~ 148 (292)
T 3k4h_A 75 LLYSREND-RIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRD 148 (292)
T ss_dssp ESCCBTTC-HHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHH
T ss_pred EeCCCCCh-HHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHH
Confidence 53322222 33455667799999875433211 1123345666777888888888899999999986543 2345
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006916 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (625)
..+.|.+.+++.|+.+.....+... .+.......++++.+. .++.|+ +.+...+..+++++++.|+..++-+-+
T Consensus 149 R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 224 (292)
T 3k4h_A 149 RLAGMSDALKLADIVLPKEYILHFD--FSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKDVSI 224 (292)
T ss_dssp HHHHHHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHHHHHcCCCCChheEEecC--CCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCeEEE
Confidence 6788999999988765322111111 2244455566665544 455555 556667888999999999865543433
No 111
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=97.80 E-value=0.0015 Score=64.89 Aligned_cols=208 Identities=6% Similarity=-0.032 Sum_probs=121.1
Q ss_pred CCceEEEEEEeec--CCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC--CChHHHHHHHHHHHhcCcEEEEcC
Q 006916 23 KPEVLNVGAIFSF--GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK--FNGFLSIMGALQFMETDTLAIVGP 98 (625)
Q Consensus 23 ~~~~i~IG~l~~~--~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~--~~~~~a~~~~~~l~~~~v~aviG~ 98 (625)
.....+||+++|. ...+-.....+++-+.++. |+++.+...++. .++..-.+....++.+++.+||-+
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKL--------NINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHT--------TCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4567899999996 3332233445555554441 566666655555 566665666667778889888875
Q ss_pred CChHHHHHHHHhhhcCCCcEEeeccCC-CCCCCCCCCceEEccCchHHHHHHHHHHHHH-cC-CcEEEEEEecCC-CCcc
Q 006916 99 QSAVMAHVLSHLANELQVPLLSFTALD-PTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FG-WGEVIAIFNDDD-QGRN 174 (625)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~-~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~-~~-W~~v~ii~~d~~-~g~~ 174 (625)
............+...++|.|...... +.......+.+.....++...+..+++.|.. .| -++|++|..... ....
T Consensus 112 ~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~ 191 (342)
T 1jx6_A 112 LDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDV 191 (342)
T ss_dssp CSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHH
T ss_pred CChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhH
Confidence 433321222333455689988763322 2100001122334556666677778888776 47 999999975533 2335
Q ss_pred hHHHHHHHHhccce-EEEEeeecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCC
Q 006916 175 GVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGM 243 (625)
Q Consensus 175 ~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~ 243 (625)
..+.+.+.+++.|. .... .+... .+...-...++++.+ ..++.|+ +.+...+..+++++++.|+
T Consensus 192 R~~Gf~~~l~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 192 RGDTFIHQVNRDNNFELQS--AYYTK--ATKQSGYDAAKASLAKHPDVDFIY-ACSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHCCEEEE--EECCC--SSHHHHHHHHHHHHHHCCCCSEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcEEEE--EecCC--CCHHHHHHHHHHHHHhCCCccEEE-ECCChhHHHHHHHHHHcCC
Confidence 56788888888876 3222 22211 223333444454433 2456555 4555668888999999887
No 112
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.80 E-value=0.0015 Score=65.01 Aligned_cols=209 Identities=11% Similarity=-0.005 Sum_probs=123.0
Q ss_pred CceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChH
Q 006916 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (625)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~ 102 (625)
....+||+++|.. ..+......+++.+.++ .|+++.+ .++..++....+....++.+++.++|-.....
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 125 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQ--------KGYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEY 125 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 3467899999864 22222344555555544 1566554 55656666655566667778898887532221
Q ss_pred HHHHHHHhhh-cCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHH
Q 006916 103 MAHVLSHLAN-ELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (625)
Q Consensus 103 ~~~~va~~~~-~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l 179 (625)
.. .....+. ..++|+|......+. . +.......++...+..+++.|...|.++|++|..... ......+.+
T Consensus 126 ~~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf 199 (340)
T 1qpz_A 126 PE-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGF 199 (340)
T ss_dssp CH-HHHHHHHTTTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHH
T ss_pred Ch-HHHHHHHhhCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHH
Confidence 11 1223333 368999987543321 1 1122344556666777888887789999999976432 244567889
Q ss_pred HHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006916 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 180 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (625)
.+.+++.|+.+.....+... .+..+-...++++.+. .++.|+. .+...+..+++++++.|+..++-+-+
T Consensus 200 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~disv 270 (340)
T 1qpz_A 200 MKAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSL 270 (340)
T ss_dssp HHHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHCCCCCChhheEeCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 99999988765322112211 1233444455555443 4566554 55567788899999999865544433
No 113
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.79 E-value=0.0017 Score=62.73 Aligned_cols=211 Identities=8% Similarity=-0.031 Sum_probs=121.5
Q ss_pred CceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHH-HHhcCcEEEEcCCChH
Q 006916 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQ-FMETDTLAIVGPQSAV 102 (625)
Q Consensus 24 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~-l~~~~v~aviG~~~s~ 102 (625)
...-+||+++|...... .....+..++++.=++. |+++.+ .+...+.... ....+ +.++++.+||-.....
T Consensus 6 ~~s~~Igvv~~~~~~~~-~~~~~~~~gi~~~a~~~----g~~~~~--~~~~~~~~~~-~~~~~~l~~~~vdgiIi~~~~~ 77 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELM-GFTSQMVFGITEVLSTT----QYHLVV--TPHIHAKDSM-VPIRYILETGSADGVIISKIEP 77 (288)
T ss_dssp -CCCEEEEECBCCCCSS-CHHHHHHHHHHHHHTTS----SCEEEE--CCBSSGGGTT-HHHHHHHHHTCCSEEEEESCCT
T ss_pred CCCCEEEEEecCCcccc-HHHHHHHHHHHHHHHHc----CCEEEE--ecCCcchhHH-HHHHHHHHcCCccEEEEecCCC
Confidence 45678999999743211 22233333333332222 566654 3433333222 22333 3456777776422221
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHH
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALG 180 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l~ 180 (625)
.. .....+...++|+|......+ +.. +-....+....+..+++.|...|-+++++|..... ......+.+.
T Consensus 78 ~~-~~~~~l~~~~iPvV~i~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~ 150 (288)
T 3gv0_A 78 ND-PRVRFMTERNMPFVTHGRSDM---GIE---HAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFN 150 (288)
T ss_dssp TC-HHHHHHHHTTCCEEEESCCCS---SCC---CEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHH
T ss_pred Cc-HHHHHHhhCCCCEEEECCcCC---CCC---CcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHH
Confidence 11 233445668999998654322 111 22344566677888888888889999999986543 2445678899
Q ss_pred HHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 181 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
+.+++.|+.+.....+... .+..+....++++.+. .++.|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 151 ~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vi 221 (288)
T 3gv0_A 151 RGIRDFGLTEFPIDAVTIE--TPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGEDVDIV 221 (288)
T ss_dssp HHHHHTTCEECCCCSCCTT--SCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTTSCEEE
T ss_pred HHHHHcCCCcchhheeccc--cchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999999876533222222 2345555666666554 355554 5556677889999999998655444333
No 114
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=97.78 E-value=0.00041 Score=68.80 Aligned_cols=205 Identities=11% Similarity=0.015 Sum_probs=121.3
Q ss_pred CCceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 006916 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (625)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s 101 (625)
.....+||+++|.. ..+......+++.+.++. |+.+.+ .++..++....+....++.+++.++|.....
T Consensus 57 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 57 SKKTTTVGVIIPDISNIFYAELARGIEDIATMY--------KYNIIL--SNSDQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp TC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--------TCEEEE--EECCSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred hCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34578899999863 333334566666666652 555544 4555555444445555666788887753322
Q ss_pred HHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecC-C--CCcchHHH
Q 006916 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD-D--QGRNGVTA 178 (625)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~-~--~g~~~~~~ 178 (625)
.....+ ..+...++|+|......+ +..+ .....++...+..+++.|...|.++|++|.... . ......+.
T Consensus 127 ~~~~~~-~~l~~~~iPvV~~~~~~~---~~~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 199 (332)
T 2hsg_A 127 VTEEHV-EELKKSPVPVVLAASIES---TNQI---PSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKG 199 (332)
T ss_dssp CCHHHH-HHHTTSSSCEEEESCCCS---CTTS---CEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHH
T ss_pred CCHHHH-HHHHhCCCCEEEEccccC---CCCC---CEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHH
Confidence 222233 334567999998754322 1112 233455566677778888888999999998653 2 34567788
Q ss_pred HHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCC
Q 006916 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (625)
Q Consensus 179 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~ 247 (625)
+.+.+++.|+.+.....+... .+..+-...++++.+. .++.|+ +.+...+..+++++++.|+..++
T Consensus 200 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~ 267 (332)
T 2hsg_A 200 YKRALTESGLPVRDSYIVEGD--YTYDSGIEAVEKLLEEDEKPTAIF-VGTDEMALGVIHGAQDRGLNVPN 267 (332)
T ss_dssp HHHHHHTTTCCCCGGGEEECC--SSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCC
Confidence 999999998764321111111 1233344455555443 456666 45666788899999999975443
No 115
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.74 E-value=0.00041 Score=67.31 Aligned_cols=209 Identities=13% Similarity=0.034 Sum_probs=125.3
Q ss_pred CceEEEEEEeecCC-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChH
Q 006916 24 PEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (625)
Q Consensus 24 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~ 102 (625)
....+||+++|... .+-.....+++-+.++. |+++. +.++..++....+....+..+++.+||-.....
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHK--------GYSVL--LANTAEDIVREREAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 45678999998642 22223445555555541 55555 455666666666666677778898887533322
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHH
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALG 180 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l~ 180 (625)
.......+...++|+|......+ + +.+.....+....+..+++.|...|-++|+++..... ......+.+.
T Consensus 76 -~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 148 (291)
T 3egc_A 76 -EHDYLRTELPKTFPIVAVNRELR---I---PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFR 148 (291)
T ss_dssp -CCHHHHHSSCTTSCEEEESSCCC---C---TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHH
T ss_pred -ChHHHHHhhccCCCEEEEecccC---C---CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHH
Confidence 23344556678999998754432 1 1223445666777888888888889999999986542 3445678888
Q ss_pred HHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 181 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
+.+++.|+.+......... .+.......++++.+ ..++.|+ +.+...+..+++++.+.|+..++-+-+.
T Consensus 149 ~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 219 (291)
T 3egc_A 149 AAMSAAGLPVRQEWIAAGG--VRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYGPDVEIV 219 (291)
T ss_dssp HHHHHTTCCCCGGGEEC--------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTTTBEEE
T ss_pred HHHHHcCCCCCHHHeEeCC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999888764321111111 011122233344332 3456655 4666678889999999998755444333
No 116
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.74 E-value=0.0016 Score=62.56 Aligned_cols=207 Identities=9% Similarity=-0.028 Sum_probs=123.0
Q ss_pred CCceEEEEEEeecCC-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 006916 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s 101 (625)
....-+||+++|... .+-.....+++-+.++ . |+++.+ .++..++..-.+....+.++++.+||-....
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~---~-----g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 73 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILES---R-----GYIGVL--FDANADIEREKTLLRAIGSRGFDGLILQSFS 73 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHT---T-----TCEEEE--EECTTCHHHHHHHHHHHHTTTCSEEEEESSC
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHH---C-----CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 345678999998642 2112233444333333 1 455554 5555566665566666777788888753333
Q ss_pred HHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC-C--CcchHHH
Q 006916 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-Q--GRNGVTA 178 (625)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~-~--g~~~~~~ 178 (625)
. ......+...++|+|......+ +... -....++...+..+++.|...|-++++++..... . .....+.
T Consensus 74 ~--~~~~~~l~~~~iPvV~i~~~~~---~~~~---~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~g 145 (276)
T 3jy6_A 74 N--PQTVQEILHQQMPVVSVDREMD---ACPW---PQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRG 145 (276)
T ss_dssp C--HHHHHHHHTTSSCEEEESCCCT---TCSS---CEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHH
T ss_pred c--HHHHHHHHHCCCCEEEEecccC---CCCC---CEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHH
Confidence 3 3444556678999998754332 1112 2344566777888888898899999999987653 2 2355677
Q ss_pred HHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEee
Q 006916 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (625)
Q Consensus 179 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (625)
|.+.+++.+. +. +...............+.++. ..++.|+ +.+...+..+++++++.|+..++-+-+.+
T Consensus 146 f~~~l~~~~~-~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig 215 (276)
T 3jy6_A 146 ILAAAQDVDV-LE----VSESSYNHSEVHQRLTQLITQNDQKTVAF-ALKERWLLEFFPNLIISGLIDNQTVTATG 215 (276)
T ss_dssp HHTTCSEEEE-EE----ECSSSCCHHHHHHHHHHHHHSSSSCEEEE-ESSHHHHHHHSHHHHHSSSCCSSSEEEEE
T ss_pred HHHHHHhCCc-EE----EeccccCCcHHHHHHHHHHhcCCCCcEEE-EeCcHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 7777777753 21 111100112344445555543 3455544 46667788899999999987665554443
No 117
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.74 E-value=0.0002 Score=69.16 Aligned_cols=202 Identities=9% Similarity=-0.017 Sum_probs=119.6
Q ss_pred ceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHH
Q 006916 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (625)
Q Consensus 25 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~ 103 (625)
..-+||+++|.. ..+-.....+++-+.++. |+++.+...+ ++....+....++++++.+|| ......
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--------GYRLSVIDSL---TSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--------TCEEEEECSS---SSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--------CCEEEEEeCC---CchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 457899999864 333334555555554442 5666554433 333333344556677888888 332222
Q ss_pred HHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHH
Q 006916 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (625)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l 183 (625)
...+.. .++|+|......+ .+...+ ....+....+..+++.|...|-++++++...........+.+.+.+
T Consensus 72 ~~~~~~----~~iPvV~~~~~~~--~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l 142 (280)
T 3gyb_A 72 DFTVPD----SLPPFVIAGTRIT--QASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATM 142 (280)
T ss_dssp -----------CCCEEEESCCCS--SSCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hhhHhh----cCCCEEEECCCCC--CCCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHH
Confidence 222222 8999998755431 112222 2345666678888888888899999999876544556678899999
Q ss_pred hccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006916 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (625)
++.|+.+.... +... .+.......++++.+. .++.|+ +.+...+..+++++++.|+..++-+-+
T Consensus 143 ~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 208 (280)
T 3gyb_A 143 RAHGLEPLSND-YLGP--AVEHAGYTETLALLKEHPEVTAIF-SSNDITAIGALGAARELGLRVPEDLSI 208 (280)
T ss_dssp HHTTCCCEECC-CCSC--CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEE
T ss_pred HHcCcCCCccc-ccCC--CCHHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCeeEE
Confidence 99988765332 2222 2344444555554433 355554 455667888999999999865543433
No 118
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.71 E-value=0.0025 Score=61.61 Aligned_cols=208 Identities=13% Similarity=0.068 Sum_probs=121.0
Q ss_pred CCCceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 006916 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (625)
Q Consensus 22 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s 101 (625)
.....-+||++++.+..+-.....+++-+.++. |+++.+...+.. .. -.+....++.+++.+||-....
T Consensus 8 ~~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~--~~-~~~~~~~l~~~~vdgiIi~~~~ 76 (289)
T 3k9c_A 8 RQASSRLLGVVFELQQPFHGDLVEQIYAAATRR--------GYDVMLSAVAPS--RA-EKVAVQALMRERCEAAILLGTR 76 (289)
T ss_dssp -----CEEEEEEETTCHHHHHHHHHHHHHHHHT--------TCEEEEEEEBTT--BC-HHHHHHHHTTTTEEEEEEETCC
T ss_pred hcCCCCEEEEEEecCCchHHHHHHHHHHHHHHC--------CCEEEEEeCCCC--HH-HHHHHHHHHhCCCCEEEEECCC
Confidence 345577899999433332233445555554442 566665544432 22 3445556667788888753322
Q ss_pred HHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC-CCcchHHHHH
Q 006916 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTALG 180 (625)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~-~g~~~~~~l~ 180 (625)
.....+.. +.. ++|+|......+ +. .+-....++...+...++.|...|-++|++|..... ......+.+.
T Consensus 77 ~~~~~~~~-~~~-~iPvV~i~~~~~---~~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~ 148 (289)
T 3k9c_A 77 FDTDELGA-LAD-RVPALVVARASG---LP---GVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFL 148 (289)
T ss_dssp CCHHHHHH-HHT-TSCEEEESSCCS---ST---TSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHH
T ss_pred CCHHHHHH-HHc-CCCEEEEcCCCC---CC---CCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHH
Confidence 22233333 345 999998754332 11 223344566667788888888889999999986543 3345678899
Q ss_pred HHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 181 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
+.+++.|+.+... .+... .+...-...++++.+. .++.|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 149 ~al~~~g~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vi 218 (289)
T 3k9c_A 149 AAMDRHGLSASAT-VVTGG--TTETEGAEGMHTLLEMPTPPTAVV-AFNDRCATGVLDLLVRSGRDVPADISVV 218 (289)
T ss_dssp HHHHHTTCGGGEE-EECCC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHCCCCCCcc-EEECC--CCHHHHHHHHHHHHcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999988763221 22222 2344455556665543 455554 4556678889999999998765444433
No 119
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=97.70 E-value=0.0027 Score=62.16 Aligned_cols=200 Identities=9% Similarity=0.004 Sum_probs=124.3
Q ss_pred eEEEEEEeec-CCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChHH
Q 006916 26 VLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 103 (625)
Q Consensus 26 ~i~IG~l~~~-~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG-~~~s~~ 103 (625)
..+||+++|. +..+-.....+++-+.++. |+++. +.++..++....+....++.+++.+||- +.....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--------GAKVF--VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV 71 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--------SCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 4589999996 3444445667777776662 55555 4556667777677777788888888774 333333
Q ss_pred HHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHH-HcCCcEEEEEEecCC--CCcchHHHHH
Q 006916 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGWGEVIAIFNDDD--QGRNGVTALG 180 (625)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~-~~~W~~v~ii~~d~~--~g~~~~~~l~ 180 (625)
.......+...++|+|......+. .... .....++...+..+++.|. ..|-++|++|..... ......+.++
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~---~~~~--~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~ 146 (313)
T 3m9w_A 72 LSNVVKEAKQEGIKVLAYDRMIND---ADID--FYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQM 146 (313)
T ss_dssp CHHHHHHHHTTTCEEEEESSCCTT---SCCS--EEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEECCcCCC---CCce--EEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHH
Confidence 234445567789999987544321 1111 2344566667888888887 899999999985433 2334567888
Q ss_pred HHHhcc----ceEEEEeeecCCCCCCChhHHHHHHHHHhc---CCceEEEEEcchhhHHHHHHHHHHcCCC
Q 006916 181 DKLAEI----RCKISYKSALPPDQSVTETDVRNELVKVRM---MEARVIVVHGYSRTGLMVFDVAQRLGMM 244 (625)
Q Consensus 181 ~~l~~~----g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~---~~~~vIvl~~~~~~~~~il~~a~~~g~~ 244 (625)
+.+++. ++.+..... ... .+.......++++.+ ..++.|+ +.+...+..+++++.+.|+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 147 KVLKPYVDSGKIKVVGDQW-VDG--WLPENALKIMENALTANNNKIDAVV-ASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHTTSEEEEEEEE-CGG--GCHHHHHHHHHHHHHHTTTCCCEEE-ESSHHHHHHHHHHHHTTTCT
T ss_pred HHHHhhccCCCEEEEeecc-CCC--cCHHHHHHHHHHHHHhCCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 888876 566653322 111 123344444444433 2455554 44556778899999998875
No 120
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.69 E-value=0.0015 Score=65.12 Aligned_cols=210 Identities=8% Similarity=-0.030 Sum_probs=125.8
Q ss_pred CCceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 006916 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (625)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s 101 (625)
....-+||+++|.. ..+-.....+++-+.++ .|+++. +.++..++..-.+....++.+++.+||-....
T Consensus 65 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 134 (344)
T 3kjx_A 65 SNRVNLVAVIIPSLSNMVFPEVLTGINQVLED--------TELQPV--VGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLE 134 (344)
T ss_dssp TSCCSEEEEEESCSSSSSHHHHHHHHHHHHTS--------SSSEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 34567899999864 22222333444333322 156664 45566666666666667777888777642222
Q ss_pred HHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecC---CCCcchHHH
Q 006916 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD---DQGRNGVTA 178 (625)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~---~~g~~~~~~ 178 (625)
... .....+...++|+|....... . +.......++..-+...++.|...|-+++++|.... .......+.
T Consensus 135 ~~~-~~~~~l~~~~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 207 (344)
T 3kjx_A 135 HSE-AARAMLDAAGIPVVEIMDSDG---K---PVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEG 207 (344)
T ss_dssp CCH-HHHHHHHHCSSCEEEEEECSS---C---CSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHH
T ss_pred CCH-HHHHHHHhCCCCEEEEeCCCC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHH
Confidence 111 334556678999998743211 1 122334456666677788888888999999998653 223456788
Q ss_pred HHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 179 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
|.+.+++.|+.+.....+... .+...-...++++.+ ..++.|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 208 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 208 FTEVLGKNGVEIEDREFYSGG--SALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp HHHHHHHTTCCCSCEEECSSC--CCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999998765433323222 223333344444432 2466655 5566778889999999998765544444
No 121
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.67 E-value=0.00049 Score=68.16 Aligned_cols=203 Identities=8% Similarity=0.001 Sum_probs=120.6
Q ss_pred CceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChH
Q 006916 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (625)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~ 102 (625)
....+||+++|.. ..+......+++.+.++ .|+.+.+ .++..++....+....++.+++.+|| .....
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~ 126 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKN--------KGYTLFL--CNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQ 126 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEE-EETCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEE-ECCCC
Confidence 3567899999864 22222344555555544 1566654 45556666666666677778898888 43222
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHH
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALG 180 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l~ 180 (625)
.. ..+...++|+|......+. .++ ....++...+...++.|...|-++|++|..... ......+.+.
T Consensus 127 ~~----~~l~~~~iPvV~~~~~~~~----~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 195 (330)
T 3ctp_A 127 CE----DEYANIDIPVVAFENHILD----NII---TISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFL 195 (330)
T ss_dssp CS----GGGTTCCSCEEEESSCCCT----TSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHH
T ss_pred CH----HHHHhcCCCEEEEeccCCC----CCC---EEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHH
Confidence 11 2345679999987543321 222 334455556677888888889999999987543 3445678889
Q ss_pred HHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 181 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
+.+++.|+.+. ...+... .+..+-...++++.+ ..++.|+. .+...+..+++++++.|+..++-+-+.
T Consensus 196 ~al~~~g~~~~-~~~~~~~--~~~~~~~~~~~~ll~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvv 264 (330)
T 3ctp_A 196 DGARAKDLEID-FIEFQHD--FQVKMLEEDINSMKDIVNYDGIFV-FNDIAAATVMRALKKRGVSIPQEVQII 264 (330)
T ss_dssp HHHHHTTCCCE-EEECSSS--CCGGGGGCCCTTGGGGGGSSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCcc-eeEEcCC--CCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 99999998654 2222211 111111122333322 24666654 455567788999999998655444433
No 122
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=97.66 E-value=2e-05 Score=72.26 Aligned_cols=76 Identities=11% Similarity=0.070 Sum_probs=64.3
Q ss_pred cceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecc------cccceEecccc
Q 006916 484 TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTN------RTKAVDFTQPY 557 (625)
Q Consensus 484 ~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~~------R~~~vdfs~p~ 557 (625)
+-+|+|+.--|.+.+. |++ +++.... .|++.+..|.+|++|+++++++.+++ |++.+|||.||
T Consensus 27 s~~yeGlatgl~~~f~---gi~--~~i~~mr------g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~y 95 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GIP--FYYAHMR------GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHT 95 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TSC--EEEEECS------CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTS
T ss_pred hhhhhHHHHHHHHHhc---CCc--EEEEEcc------ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCc
Confidence 3578898877777773 666 6666641 29999999999999999999999999 99999999999
Q ss_pred cccceEEEEecCC
Q 006916 558 IESGLVVVAPVRK 570 (625)
Q Consensus 558 ~~~~~~~l~~~~~ 570 (625)
+.+...++++++.
T Consensus 96 Yv~~h~li~~~~~ 108 (231)
T 2ozz_A 96 YVGEHQLICRKGE 108 (231)
T ss_dssp SSCCEEEEEETTC
T ss_pred cccCeEEEEeCCC
Confidence 9888888887765
No 123
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.66 E-value=0.001 Score=64.98 Aligned_cols=205 Identities=10% Similarity=-0.008 Sum_probs=122.5
Q ss_pred CCceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 006916 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (625)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s 101 (625)
....-+||+++|.. ..+-.....+++-+.++. |+.+. +.++..++....+....++.+++.+||-....
T Consensus 12 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 81 (303)
T 3kke_A 12 HSRSGTIGLIVPDVNNAVFADMFSGVQMAASGH--------STDVL--LGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRE 81 (303)
T ss_dssp -----CEEEEESCTTSTTHHHHHHHHHHHHHHT--------TCCEE--EEECCSTTHHHHHHHHHHHSCSSSEEEECCCT
T ss_pred hCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 44567899999964 333334556666555552 45554 34555565555556666777789888753332
Q ss_pred HHHH-HHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHH
Q 006916 102 VMAH-VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 178 (625)
Q Consensus 102 ~~~~-~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~ 178 (625)
.... .+..+.+ ++|+|......+. ..+ ....++...+...++.|...|-++|++|..... ......+.
T Consensus 82 ~~~~~~~~~l~~--~iPvV~i~~~~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 152 (303)
T 3kke_A 82 DFDDDMLAAVLE--GVPAVTINSRVPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEG 152 (303)
T ss_dssp TCCHHHHHHHHT--TSCEEEESCCCTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHH
T ss_pred CCcHHHHHHHhC--CCCEEEECCcCCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHH
Confidence 2222 4444444 9999987554332 222 234556666777888888889999999986433 34456788
Q ss_pred HHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHH-----hcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeE
Q 006916 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-----RMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 249 (625)
Q Consensus 179 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i-----~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~ 249 (625)
+.+.+++.|+.+......... .+...-...++++ .+. .++.|+ +.+...+..+++++++.|+..++-+
T Consensus 153 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di 227 (303)
T 3kke_A 153 YLETLASAGLRSEAAWVVDAG--WEADAGSAALNTLYRGANLGKPDGPTAVV-VASVNAAVGALSTALRLGLRVPEDL 227 (303)
T ss_dssp HHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHHHHCTTSTTSCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHcCCCCCcceEEecC--CChHHHHHHHHHhcchhhhcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCce
Confidence 999999988765321111111 2244445556666 443 355554 4555678889999999998755433
No 124
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.65 E-value=0.0012 Score=64.07 Aligned_cols=210 Identities=12% Similarity=0.063 Sum_probs=125.2
Q ss_pred eEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC-ChH-
Q 006916 26 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ-SAV- 102 (625)
Q Consensus 26 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~-~s~- 102 (625)
.-+||+++|.. ..+-.....+++-+.++. |+++.+ .++..++....+....++.+++.+||-.. .+.
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 84 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQ--------GYSMLL--TSTNNNPDNERRGLENLLSQHIDGLIVEPTKSAL 84 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTS
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHHCCCCEEEEecccccc
Confidence 47899999974 333334556666555551 565554 45556666666677777788898887533 221
Q ss_pred --HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC-CCcchHHHH
Q 006916 103 --MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTAL 179 (625)
Q Consensus 103 --~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~-~g~~~~~~l 179 (625)
........+...++|+|......+. ...+ ....+....+...++.|...|-++++++..... ......+.+
T Consensus 85 ~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~~~---~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf 158 (298)
T 3tb6_A 85 QTPNIGYYLNLEKNGIPFAMINASYAE---LAAP---SFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGF 158 (298)
T ss_dssp CCTTHHHHHHHHHTTCCEEEESSCCTT---CSSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHH
T ss_pred cCCcHHHHHHHHhcCCCEEEEecCcCC---CCCC---EEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHH
Confidence 2334445566789999987544321 1122 244566667788888888889999999986543 234567788
Q ss_pred HHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--C--ceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--E--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 180 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~--~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
.+.+++.|+.+.....+..............++++.+. . ++.|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 159 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 159 IQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp HHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 89999888764321111111000001112333333222 2 55554 4556677889999999998755544443
No 125
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.62 E-value=0.0047 Score=59.86 Aligned_cols=212 Identities=9% Similarity=0.034 Sum_probs=120.8
Q ss_pred CceEEEEEEeecCC--CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 006916 24 PEVLNVGAIFSFGT--VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (625)
Q Consensus 24 ~~~i~IG~l~~~~~--~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s 101 (625)
...-+||+++|... .........+..++++.=++. |+.+. +.++..++....+....+..+++.+||-....
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~----g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 78 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQH----GYGTQ--TTVSNNMNDLMDEVYKMIKQRMVDAFILLYSK 78 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTT----TCEEE--ECCCCSHHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHC----CCEEE--EEcCCCChHHHHHHHHHHHhCCcCEEEEcCcc
Confidence 45678999996421 001122222333333322222 55554 45555544444444555566788888753222
Q ss_pred HHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCC--CcchHHHH
Q 006916 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ--GRNGVTAL 179 (625)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~--g~~~~~~l 179 (625)
.. ......+...++|+|......+ +... .+.....++..-+...++.|...|-++|++|...... .....+.+
T Consensus 79 ~~-~~~~~~l~~~~iPvV~i~~~~~---~~~~-~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (295)
T 3hcw_A 79 EN-DPIKQMLIDESMPFIVIGKPTS---DIDH-QFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGF 153 (295)
T ss_dssp TT-CHHHHHHHHTTCCEEEESCCCS---SGGG-GSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHH
T ss_pred cC-hHHHHHHHhCCCCEEEECCCCc---cccC-CceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHHHHHH
Confidence 21 2334455677999998754322 1100 1223344556667778888888899999999875432 44567889
Q ss_pred HHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc-----CCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 180 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~-----~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
.+.+++.|+.+... ... .+..+....++++.+ ..+++|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 154 ~~al~~~g~~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vi 225 (295)
T 3hcw_A 154 ETVASQFNLDYQII-ETS----NEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDVMTA 225 (295)
T ss_dssp HHHHHHTTCEEEEE-EEC----SCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTEEEE
T ss_pred HHHHHHcCCCeeEE-ecc----CCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999999876522 111 123343344444432 1466654 5666678889999999998765544443
No 126
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.59 E-value=0.0012 Score=63.86 Aligned_cols=209 Identities=9% Similarity=0.013 Sum_probs=121.2
Q ss_pred CCCceEEEEEEeec--CCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC
Q 006916 22 LKPEVLNVGAIFSF--GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ 99 (625)
Q Consensus 22 ~~~~~i~IG~l~~~--~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~ 99 (625)
......+||+++|. ...+-.....+++-+.++. |+.+.+...+...+.. .+....+..+++.+||-..
T Consensus 7 ~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~--~~~~~~l~~~~vdgiIi~~ 76 (289)
T 3g85_A 7 NSQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ--------NYNYNVVICPYKTDCL--HLEKGISKENSFDAAIIAN 76 (289)
T ss_dssp ----CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT--------TTCSEEEEEEECTTCG--GGCGGGSTTTCCSEEEESS
T ss_pred ccCCCceEEEEeccccchHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCchhH--HHHHHHHhccCCCEEEEec
Confidence 34567899999993 2333334456665555552 3444443332221111 1222334456888887544
Q ss_pred ChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHH
Q 006916 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVT 177 (625)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~ 177 (625)
.......+... ...++|+|......+ .+-....++...+..+++.|...|-++++++..+.. ......+
T Consensus 77 ~~~~~~~~~~~-~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (289)
T 3g85_A 77 ISNYDLEYLNK-ASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNK 147 (289)
T ss_dssp CCHHHHHHHHH-CCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHH
T ss_pred CCcccHHHHHh-ccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHH
Confidence 33333333333 367999998755322 123445566777788888888889999999986543 2345678
Q ss_pred HHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 178 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
.+.+.+++.|+.+.....+... .+..+....++++.+. .++.|+ +.+...+..+++++.+.|+..++-+-+.
T Consensus 148 gf~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vi 221 (289)
T 3g85_A 148 GFIETCHKNGIKISENHIIAAE--NSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIPDDIEIV 221 (289)
T ss_dssp HHHHHHHHTTCBCCGGGEEECC--SSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHcCCCCChhheeccC--CCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCCCceEEE
Confidence 8999999988765321111111 2244455566666544 355554 5566678889999999998755444433
No 127
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.55 E-value=0.0024 Score=61.94 Aligned_cols=207 Identities=8% Similarity=-0.029 Sum_probs=118.7
Q ss_pred CceEEEEEEeecC-----CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcC
Q 006916 24 PEVLNVGAIFSFG-----TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGP 98 (625)
Q Consensus 24 ~~~i~IG~l~~~~-----~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~ 98 (625)
...-+||+++|.. ..+-.....+++-+.++ . |+.+.+...+..... .+....+..+++.+||-.
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~---~-----g~~~~~~~~~~~~~~---~~~~~~l~~~~vdGiIi~ 72 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGK---R-----GLDLLLIPDEPGEKY---QSLIHLVETRRVDALIVA 72 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH---T-----TCEEEEEEECTTCCC---HHHHHHHHHTCCSEEEEC
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHH---C-----CCEEEEEeCCChhhH---HHHHHHHHcCCCCEEEEe
Confidence 3467899999832 22222334444444444 1 567766555431111 122233345588887743
Q ss_pred CChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchH
Q 006916 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGV 176 (625)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~ 176 (625)
...... .....+...++|+|......+ ... +-....++...+...++.|...|-++|++|..... ......
T Consensus 73 ~~~~~~-~~~~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 145 (294)
T 3qk7_A 73 HTQPED-FRLQYLQKQNFPFLALGRSHL---PKP---YAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRL 145 (294)
T ss_dssp SCCSSC-HHHHHHHHTTCCEEEESCCCC---SSC---CEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHH
T ss_pred CCCCCh-HHHHHHHhCCCCEEEECCCCC---CCC---CCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHH
Confidence 222111 333455677999998754321 112 23345566667778888888889999999987543 234567
Q ss_pred HHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006916 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 177 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (625)
+.+.+.+++.|+.+.....+... .+...-...++++.+. .++.|+ +.+...+..+++++++.|+..++-+-+
T Consensus 146 ~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~v 219 (294)
T 3qk7_A 146 QGYVQTMSEAGLMPLAGYLQKAD--PTRPGGYLAASRLLALEVPPTAII-TDCNMLGDGVASALDKAGLLGGEGISL 219 (294)
T ss_dssp HHHHHHHHTTTCCCCTTCEEEEC--SSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCSSTTSCEE
T ss_pred HHHHHHHHHCCCCCChhHeecCC--CCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 88999999988764211111111 1234444455555443 455554 456677888999999999876544433
No 128
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.55 E-value=0.0041 Score=61.97 Aligned_cols=206 Identities=11% Similarity=0.023 Sum_probs=116.7
Q ss_pred ceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHH
Q 006916 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (625)
Q Consensus 25 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~ 103 (625)
...+||+++|.. ..+......+++-+.++ . |+++.+ .++..++....+....++.+++.++|-......
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~---~-----g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 134 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASK---A-----GLATII--TNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC 134 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHH---T-----TCCEEE--EECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH---c-----CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 456899999863 22222344555544444 1 455543 455556655555566667778888775333322
Q ss_pred HHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHHH
Q 006916 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGD 181 (625)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l~~ 181 (625)
.. ....+...++|+|......+. ....+ ....++..-+...++.|...|-++|++|..... ......+.+.+
T Consensus 135 ~~-~~~~l~~~~iPvV~i~~~~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 208 (348)
T 3bil_A 135 AN-QLEDLQKQGMPVVLVDRELPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKA 208 (348)
T ss_dssp HH-HHHHHHHC-CCEEEESSCCSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHH
T ss_pred hH-HHHHHHhCCCCEEEEcccCCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 22 233445679999987543221 01122 233455556777888888889999999986532 23456788889
Q ss_pred HHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006916 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 182 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (625)
.+++.|+..... +... .+..+-...++++.+...- .|++.+...+..+++++++.|+..++-+-+
T Consensus 209 al~~~g~~~~~v--~~~~--~~~~~~~~~~~~ll~~~~~-ai~~~nD~~A~g~~~al~~~G~~vP~disv 273 (348)
T 3bil_A 209 ACANSKIGEQLV--FLGG--YEQSVGFEGATKLLDQGAK-TLFAGDSMMTIGVIEACHKAGLVIGKDVSV 273 (348)
T ss_dssp HHHHTTCCCCEE--ECCC--SSHHHHHHHHHHHHHTTCS-EEEESSHHHHHHHHHHHHHTTCCBTTTBEE
T ss_pred HHHHcCcCccEE--EcCC--CCHHHHHHHHHHHHcCCCC-EEEEcChHHHHHHHHHHHHcCCCCCCCeEE
Confidence 999888632211 1111 1233344455555443322 444566667888999999999865544433
No 129
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.52 E-value=0.0067 Score=60.60 Aligned_cols=210 Identities=9% Similarity=0.042 Sum_probs=122.9
Q ss_pred CceEEEEEEeecCC-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChH
Q 006916 24 PEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (625)
Q Consensus 24 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~ 102 (625)
...-+||+++|... .+-.....+++-+.++ . |+.+. +.++..++....+....++.+++.++|-.....
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~---~-----g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~ 137 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQ---G-----GLQLL--LGYTAYSPEREEQLVETMLRRRPEAMVLSYDGH 137 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHH---T-----TCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHH---C-----CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 34568999998642 1112334444444443 1 56664 445555666655666667777887776422221
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCC---CcchHHHH
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ---GRNGVTAL 179 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~---g~~~~~~l 179 (625)
.. .....+...++|+|...... .. +.......++..-+..+++.|...|-+++++|...... .....+.+
T Consensus 138 ~~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf 210 (355)
T 3e3m_A 138 TE-QTIRLLQRASIPIVEIWEKP---AH---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGF 210 (355)
T ss_dssp CH-HHHHHHHHCCSCEEEESSCC---SS---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHH
T ss_pred CH-HHHHHHHhCCCCEEEECCcc---CC---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHH
Confidence 22 33445567899999863221 11 12234456666677778888888899999999875432 34667889
Q ss_pred HHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 180 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
.+.+++.|+.+.....+.... .+...-...++++.+ ..++.|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 211 ~~al~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvi 283 (355)
T 3e3m_A 211 KRAMREAGLNPDQEIRLGAPP-LSIEDGVAAAELILQEYPDTDCIF-CVSDMPAFGLLSRLKSIGVAVPEQVSVV 283 (355)
T ss_dssp HHHHHHTTSCSCCEEEESCSS-CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEE
T ss_pred HHHHHHCCcCCCccEEEecCC-CCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999987643211121110 123333344444433 3456655 4566678889999999998765544443
No 130
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.41 E-value=0.0073 Score=59.87 Aligned_cols=208 Identities=9% Similarity=0.018 Sum_probs=124.5
Q ss_pred CceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChH
Q 006916 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (625)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~ 102 (625)
...-+||+++|.. ..+-.....+++-+.++. |+.+. +.++..++..-.+....++.+++.+||-.....
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 129 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAA--------GYQML--IGNSHYDAGQELQLLRAYLQHRPDGVLITGLSH 129 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 3466899999874 333345566666666552 56654 456666766666666677778888776322111
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC-CCcchHHHHHH
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTALGD 181 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~-~g~~~~~~l~~ 181 (625)
. ......+...++|+|......+ . +.. ....++...+...++.|...|-++|++|..... ......+.+.+
T Consensus 130 ~-~~~~~~l~~~~iPvV~~~~~~~---~---~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~ 201 (339)
T 3h5o_A 130 A-EPFERILSQHALPVVYMMDLAD---D---GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRA 201 (339)
T ss_dssp C-TTHHHHHHHTTCCEEEEESCCS---S---SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHH
T ss_pred C-HHHHHHHhcCCCCEEEEeecCC---C---CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHH
Confidence 1 1334455678999998743211 1 112 445666667788888888889999999987542 23455678888
Q ss_pred HHhccceEEEEee-ecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 182 KLAEIRCKISYKS-ALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 182 ~l~~~g~~v~~~~-~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
.+++.|+...... ..... .+...-...++++.+ ..++.|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 202 al~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvv 272 (339)
T 3h5o_A 202 ALDAADCRDAGLEWLDPQP--SSMQMGADMLDRALAERPDCDALF-CCNDDLAIGALARSQQLGIAVPERLAIA 272 (339)
T ss_dssp HHHHTTCCCGGGEEEECSC--CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHCCCCCCChheEecCC--CCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 9998887211111 11111 223333444554433 2456655 4566678889999999998765544443
No 131
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.40 E-value=0.0065 Score=62.09 Aligned_cols=209 Identities=9% Similarity=0.020 Sum_probs=119.3
Q ss_pred CCceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChH
Q 006916 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~ 102 (625)
.....+||+++|....+-.....+++-+.++. |+.+.+...+... +....+..+++.+||-...
T Consensus 22 ~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~--------g~~~~i~~~~~~~------~~i~~l~~~~vDGiIi~~~-- 85 (412)
T 4fe7_A 22 FTKRHRITLLFNANKAYDRQVVEGVGEYLQAS--------QSEWDIFIEEDFR------ARIDKIKDWLGDGVIADFD-- 85 (412)
T ss_dssp CCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH--------TCCEEEEECC-CC--------------CCCSEEEEETT--
T ss_pred CCCCceEEEEeCCcchhhHHHHHHHHHHHHhc--------CCCeEEEecCCcc------chhhhHhcCCCCEEEEecC--
Confidence 45678999999855443334556666666554 3455544433221 1233455668888875322
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCC----CcchHHH
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ----GRNGVTA 178 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~----g~~~~~~ 178 (625)
...+...+...++|+|......+...+ .+.+-....++..-+...++.|...|-++|++|...... .....+.
T Consensus 86 -~~~~~~~l~~~~iPvV~i~~~~~~~~~--~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~G 162 (412)
T 4fe7_A 86 -DKQIEQALADVDVPIVGVGGSYHLAES--YPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYA 162 (412)
T ss_dssp -CHHHHHHHTTCCSCEEEEEECCSSGGG--SCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHH
T ss_pred -ChHHHHHHhhCCCCEEEecCCcccccc--CCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHH
Confidence 223445566789999987554321111 122334455666677888888888999999999865433 4466788
Q ss_pred HHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHH-hc-CCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-RM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 179 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i-~~-~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
+.+.+++.|+........... ..+.......+.++ +. ..++.|+ +.+...+..+++++.+.|+..++-+-+.
T Consensus 163 f~~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~A~g~~~al~~~G~~vP~disvi 236 (412)
T 4fe7_A 163 FRQLVAEEKYRGVVYQGLETA-PENWQHAQNRLADWLQTLPPQTGII-AVTDARARHILQVCEHLHIPVPEKLCVI 236 (412)
T ss_dssp HHHHHTTSSSCCEEECCSCSS-CSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHHHHHHHHHHHHHTCCTTTTSEEE
T ss_pred HHHHHHHcCCCcccccccccc-ccchhhHHHHHHHHHHhCCCCeEEE-EEecHHHHHHHHHHHHcCCCCCceEEEE
Confidence 999999988764322111111 01222333344333 22 3456554 5566678889999999998655444443
No 132
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.38 E-value=0.0029 Score=60.66 Aligned_cols=201 Identities=9% Similarity=0.030 Sum_probs=113.6
Q ss_pred CceEEEEEEeecCC-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChH
Q 006916 24 PEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (625)
Q Consensus 24 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~ 102 (625)
...-+||+++|... .+-.....+++-+.++. |+++. +.++..++....+....+..+++.+||-...+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~- 74 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAH--------GYQVL--IGNSDNDIKKAQGYLATFVSHNCTGMISTAFN- 74 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECGGG-
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC-
Confidence 45678999999642 22223345554444442 45554 45555666666666666777888888753322
Q ss_pred HHHHHHH-hhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHH
Q 006916 103 MAHVLSH-LANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (625)
Q Consensus 103 ~~~~va~-~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l 179 (625)
... .. .+...++|+|......+.. . ....++...+..+++.|...|-++++++..... ......+.+
T Consensus 75 -~~~-~~~~l~~~~iPvV~~~~~~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 144 (277)
T 3e61_A 75 -ENI-IENTLTDHHIPFVFIDRINNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGI 144 (277)
T ss_dssp -HHH-HHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHH
T ss_pred -hHH-HHHHHHcCCCCEEEEeccCCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHH
Confidence 222 33 5567799999875543211 1 445666677888888888889999999986532 334567889
Q ss_pred HHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 180 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
.+.+++.|+.+.. ...... .....+.. +++ ...++.|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 145 ~~~l~~~~~~~~~-~~~~~~--~~~~~~~~-l~~--~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vi 210 (277)
T 3e61_A 145 KYILDQQRIDYKM-LEATLL--DNDKKFID-LIK--ELSIDSII-CSNDLLAINVLGIVQRYHFKVPAEIQII 210 (277)
T ss_dssp HHHHHC---CEEE-EEGGGG--GSHHHHHH-HHH--HHTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCccc-eecCCC--CHHHHHHH-hhc--CCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999999887654 111111 11222222 222 23466555 4556678889999999998755544444
No 133
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.38 E-value=0.022 Score=54.26 Aligned_cols=196 Identities=10% Similarity=0.084 Sum_probs=111.1
Q ss_pred EEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChHHHH
Q 006916 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (625)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG-~~~s~~~~ 105 (625)
+||++.|.. ..+-.....+++-+.++. |+++.+ .++..++..-.+....++.+++.++|- +.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNLVV--LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc--------CcEEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 589998863 222223445555555542 455543 455556555555555666778988774 33332222
Q ss_pred HHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHc--CCcEEEEEEecCC--CCcchHHHHHH
Q 006916 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD--QGRNGVTALGD 181 (625)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~--~W~~v~ii~~d~~--~g~~~~~~l~~ 181 (625)
.....+...++|+|......+ ... ........+..-+...++.|... |-+++++|..... ......+.+++
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~~---~~~--~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQAT---KGE--VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SSC--CSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCC---CCc--eeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 223444567999998754321 111 11123345555566677776655 5689999985432 23456778899
Q ss_pred HHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCC
Q 006916 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGM 243 (625)
Q Consensus 182 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~ 243 (625)
.+++.|+.+.....-. .+...-...++++.+ ..++.| ++.+...+..+++++++.|+
T Consensus 148 al~~~g~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~g~ 206 (271)
T 2dri_A 148 AVAAHKFNVLASQPAD----FDRIKGLNVMQNLLTAHPDVQAV-FAQNDEMALGALRALQTAGK 206 (271)
T ss_dssp HHHHHTCEEEEEEECT----TCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCEEEEecCCC----CCHHHHHHHHHHHHHhCCCccEE-EECCCcHHHHHHHHHHHcCC
Confidence 9999898764322111 123333344444432 234544 45566678889999999986
No 134
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.36 E-value=0.012 Score=56.25 Aligned_cols=200 Identities=8% Similarity=-0.072 Sum_probs=114.8
Q ss_pred CCceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 006916 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (625)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s 101 (625)
.....+||+++|.. ..+-.....+++-+.++ .|+.+.+.. +..++.... ++ ++.+||-....
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~--~~~~~~~~~----~~---~vdgiI~~~~~ 67 (277)
T 3cs3_A 5 RRQTNIIGVYLADYGGSFYGELLEGIKKGLAL--------FDYEMIVCS--GKKSHLFIP----EK---MVDGAIILDWT 67 (277)
T ss_dssp CCCCCEEEEEECSSCTTTHHHHHHHHHHHHHT--------TTCEEEEEE--STTTTTCCC----TT---TCSEEEEECTT
T ss_pred ccCCcEEEEEecCCCChhHHHHHHHHHHHHHH--------CCCeEEEEe--CCCCHHHHh----hc---cccEEEEecCC
Confidence 34567899999863 33323344555444443 156665533 322221100 11 67766642222
Q ss_pred HHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHH
Q 006916 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (625)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l 179 (625)
.....+ ..+...++|+|......+ + +.+.....++...+..+++.|...|-++|++|..+.. ......+.+
T Consensus 68 ~~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 140 (277)
T 3cs3_A 68 FPTKEI-EKFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVS 140 (277)
T ss_dssp SCHHHH-HHHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHH
T ss_pred CCHHHH-HHHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHH
Confidence 112233 334558999998644322 1 1234455566666777888888889999999986532 234567788
Q ss_pred HHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC---CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 180 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~---~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
.+.+++.|+.+. ...-. .+..+-...++++.+. .++.|+ +.+...+..+++++++.|+..++-+.+.
T Consensus 141 ~~~l~~~g~~~~-~~~~~----~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 141 TRELTRFGIPYE-IIQGD----FTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp HHHHHHTTCCEE-EEECC----SSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHTTSSCCBTTTEEEE
T ss_pred HHHHHHcCCCee-EEeCC----CChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 899999988765 21111 1244444556666544 455554 4556667888999999987655545444
No 135
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.29 E-value=0.0085 Score=58.31 Aligned_cols=203 Identities=10% Similarity=0.057 Sum_probs=118.7
Q ss_pred CCceEEEEEEeecC------CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE
Q 006916 23 KPEVLNVGAIFSFG------TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV 96 (625)
Q Consensus 23 ~~~~i~IG~l~~~~------~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~avi 96 (625)
....-+||+++|.. ..+-.....+++-+.++. |+++. +.++..++....+....+..+++.+||
T Consensus 19 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI 88 (305)
T 3huu_A 19 TNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--------GYSTR--MTVSENSGDLYHEVKTMIQSKSVDGFI 88 (305)
T ss_dssp --CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--------TCEEE--ECCCSSHHHHHHHHHHHHHTTCCSEEE
T ss_pred hCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEE
Confidence 34567899999972 222223445555555553 45554 455555544444445556667888877
Q ss_pred cCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCC--Ccc
Q 006916 97 GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ--GRN 174 (625)
Q Consensus 97 G~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~--g~~ 174 (625)
-....... .....+...++|+|...... ... .+-....++...+...++.|...|-++|++|...... ...
T Consensus 89 i~~~~~~~-~~~~~l~~~~iPvV~i~~~~---~~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~ 161 (305)
T 3huu_A 89 LLYSLKDD-PIEHLLNEFKVPYLIVGKSL---NYE---NIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTED 161 (305)
T ss_dssp ESSCBTTC-HHHHHHHHTTCCEEEESCCC---SST---TCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHH
T ss_pred EeCCcCCc-HHHHHHHHcCCCEEEECCCC---ccc---CCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHH
Confidence 42222111 33445567799999865432 111 1233455666677888888888899999999875432 345
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHH-hc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCCeE
Q 006916 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-RM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 249 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i-~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~ 249 (625)
..+.+.+.+++.|+.+.. .+... ... ....++++ .+ ..++.|+ +.+...+..+++++++.|+..++-+
T Consensus 162 R~~Gf~~~l~~~g~~~~~--~~~~~---~~~-~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~di 232 (305)
T 3huu_A 162 RSVGFKQYCDDVKISNDC--VVIKS---MND-LRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQLRIPEDI 232 (305)
T ss_dssp HHHHHHHHHHHTTCCCCE--EEECS---HHH-HHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHHHHHcCCCccc--EEecC---cHH-HHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCcce
Confidence 678899999998876543 11111 111 33344444 32 3455554 4566678889999999998655433
No 136
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.28 E-value=0.0042 Score=59.56 Aligned_cols=198 Identities=9% Similarity=-0.001 Sum_probs=123.1
Q ss_pred CCceEEEEEEeecCC-CCchhHHHHHHHHHHHHhcCCCCCCCcE-EEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 006916 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRK-LSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~-l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~ 100 (625)
....-+||+++|... .+-.....+++-+.++. |++ +. +.++..++..-.+....+..+++.++|-..
T Consensus 7 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~- 75 (277)
T 3hs3_A 7 QKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--------GYTALI--SFSTNSDVKKYQNAIINFENNNVDGIITSA- 75 (277)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEEE--EECSSCCHHHHHHHHHHHHHTTCSEEEEEC-
T ss_pred cCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--------CCCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEcc-
Confidence 445789999999742 22223345555444441 555 43 466666766666666677778888877532
Q ss_pred hHHHHHHHHhhhcCCCcEEeeccC-CCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHH
Q 006916 101 AVMAHVLSHLANELQVPLLSFTAL-DPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVT 177 (625)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~-~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~ 177 (625)
.....+...++|+|..... .+ + +.+ ....++...+...++.|. .|-++++++..... ......+
T Consensus 76 -----~~~~~~~~~~iPvV~~~~~~~~---~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~ 142 (277)
T 3hs3_A 76 -----FTIPPNFHLNTPLVMYDSANIN---D---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIE 142 (277)
T ss_dssp -----CCCCTTCCCSSCEEEESCCCCC---S---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHH
T ss_pred -----hHHHHHHhCCCCEEEEcccccC---C---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHH
Confidence 1122345679999987544 22 1 223 555666666777788877 89999999986532 3445678
Q ss_pred HHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 178 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
.+.+.+++.|+.+... ..... .. ...++++.+ ..++.|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 143 Gf~~~l~~~g~~~~~~-~~~~~---~~---~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vi 211 (277)
T 3hs3_A 143 AMTAEASKLKIDYLLE-ETPEN---NP---YISAQSALNKSNQFDAII-TVNDLYAAEIIKEAKRRNLKIPDDFQLV 211 (277)
T ss_dssp HHHHHHHHTTCEEEEE-ECCSS---CH---HHHHHHHHHTGGGCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHCCCCCCCC-CccCC---ch---HHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 8999999999887654 33222 11 334444433 2455554 4555678889999999998755544443
No 137
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.26 E-value=0.051 Score=52.21 Aligned_cols=208 Identities=10% Similarity=0.014 Sum_probs=116.8
Q ss_pred EEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEec--CCCChHHHHHHHHHHHhcCcEEEEc-CCChHH
Q 006916 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHD--AKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 103 (625)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D--~~~~~~~a~~~~~~l~~~~v~aviG-~~~s~~ 103 (625)
+||++.|.. ..+-.....+++.+.++. |+++.+ .+ +..++..-.+....++.+++.++|- +.....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~ 72 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVDI--FASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVN 72 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEEE--EECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSST
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHH
Confidence 689998863 222223345555555543 344443 44 5556655555566677788988774 333222
Q ss_pred -HHHHHHhhhcCCCcEEeeccCCCCCC-C---CCCCceEEccCchHHHHHHHHHHHHHc-C--CcEEEEEEecCCC--Cc
Q 006916 104 -AHVLSHLANELQVPLLSFTALDPTLS-P---LQYPFFVQTAPNDLYLMSAIAEMVSYF-G--WGEVIAIFNDDDQ--GR 173 (625)
Q Consensus 104 -~~~va~~~~~~~iP~Is~~~~~~~ls-~---~~~~~~~r~~ps~~~~~~al~~ll~~~-~--W~~v~ii~~d~~~--g~ 173 (625)
...+ ..+...++|+|......+... . ..+. -....++..-+...++.|... | -++|++|...... ..
T Consensus 73 ~~~~~-~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~--~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~ 149 (288)
T 1gud_A 73 LVMPV-ARAWKKGIYLVNLDEKIDMDNLKKAGGNVE--AFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGE 149 (288)
T ss_dssp THHHH-HHHHHTTCEEEEESSCCCHHHHHHTTCCCS--EEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHH
T ss_pred HHHHH-HHHHHCCCeEEEECCCCCcccccccCCcee--EEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHh
Confidence 2233 334557999998743221100 0 0110 234455666667777777665 8 8999999865332 23
Q ss_pred chHHHHHHHHhcc-ceEEEEeeecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEE
Q 006916 174 NGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVW 250 (625)
Q Consensus 174 ~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~ 250 (625)
...+.+++.+++. |+.+.....-. .+...-...++++.+ ..++.|+ +.+...+..+++++++.|+. .+...
T Consensus 150 ~R~~Gf~~al~~~~g~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~-~dv~v 223 (288)
T 1gud_A 150 ARRNGATEAFKKASQIKLVASQPAD----WDRIKALDVATNVLQRNPNIKAIY-CANDTMAMGVAQAVANAGKT-GKVLV 223 (288)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCT-TTSEE
T ss_pred HHHHHHHHHHHhCCCcEEEEeecCC----ccHHHHHHHHHHHHHhCCCceEEE-ECCCchHHHHHHHHHhcCCC-CCeEE
Confidence 5577888999887 88764322111 123333444454433 2355544 45556788899999999974 34444
Q ss_pred EeeC
Q 006916 251 IATT 254 (625)
Q Consensus 251 i~~~ 254 (625)
+..+
T Consensus 224 vGfD 227 (288)
T 1gud_A 224 VGTD 227 (288)
T ss_dssp EEES
T ss_pred EEeC
Confidence 4433
No 138
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.24 E-value=0.021 Score=53.74 Aligned_cols=190 Identities=12% Similarity=0.013 Sum_probs=114.4
Q ss_pred EEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHHH
Q 006916 27 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (625)
Q Consensus 27 i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~~ 105 (625)
-+||+++|.. ..+-.....+++-+.++. |+++.+ .++..++..-.+....+..+++.++|-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQ--------GYDPIM--MESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITE 72 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCT
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHc--------CCEEEE--EeCCCcHHHHHHHHHHHHhcCCCEEEEecCccccH
Confidence 3689999863 222223445555555543 455543 45555665555555566677888776432211111
Q ss_pred HHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEec--C-CCCcchHHHHHHH
Q 006916 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--D-DQGRNGVTALGDK 182 (625)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d--~-~~g~~~~~~l~~~ 182 (625)
..+...++|+|...... +.+-....++...+..+++.|...|.++|+++... + .......+.+.+.
T Consensus 73 ---~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~a 141 (255)
T 1byk_A 73 ---EMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAF 141 (255)
T ss_dssp ---TTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHH
T ss_pred ---HHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHH
Confidence 23455689999864421 11233445666667778888888899999999854 2 3345677889999
Q ss_pred HhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCC
Q 006916 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 243 (625)
Q Consensus 183 l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~ 243 (625)
+++.|+.+.. +... .+..+-...++++.+.+++.|+ +.+...+..+++++++.|+
T Consensus 142 l~~~g~~~~~---~~~~--~~~~~~~~~~~~~l~~~~~ai~-~~~d~~A~g~~~al~~~g~ 196 (255)
T 1byk_A 142 CKAHKLHPVA---ALPG--LAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQEQRI 196 (255)
T ss_dssp HHHTTCCCEE---ECCC--SCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCcce---eecC--CccchHHHHHHHHhcCCCCEEE-EeChHHHHHHHHHHHHcCC
Confidence 9998875431 2211 1233334445555444566655 4555678889999999886
No 139
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.20 E-value=0.023 Score=56.07 Aligned_cols=198 Identities=11% Similarity=0.014 Sum_probs=119.2
Q ss_pred CceEEEEEEeecCC-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChH
Q 006916 24 PEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (625)
Q Consensus 24 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~ 102 (625)
...-+||+++|... .+-.....+++-+.++. |+.+.+ .++.. +....+....+..+++.+||-...
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~-- 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAA--------GYQMLV--AEANS-VQAQDVVMESLISIQAAGIIHVPV-- 128 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEE--EECCS-HHHHHHHHHHHHHHTCSEEEECCC--
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEE--ECCCC-hHHHHHHHHHHHhCCCCEEEEcch--
Confidence 34678999999742 22234455665555553 456554 34444 444445555666778988885433
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHH
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALG 180 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l~ 180 (625)
...+...++|+|......+. ...+ ....++...+...++.|...|-++|++|..... ......+.+.
T Consensus 129 -----~~~~~~~~iPvV~~~~~~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 197 (333)
T 3jvd_A 129 -----VGSIAPEGIPMVQLTRGELG---PGFP---RVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGIS 197 (333)
T ss_dssp -----TTCCC-CCSCEEEECC-------CCSC---EEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHH
T ss_pred -----HHHHhhCCCCEEEECccCCC---CCCC---EEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 34456679999987543321 1222 334556666777788888889999999987543 2445678899
Q ss_pred HHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCC-ceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006916 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 181 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (625)
+.+++.|+... .... . .+..+....++++.+.. ++.|+ +.+...+..+++++++.|+..++-+-+
T Consensus 198 ~al~~~g~~~~--~~~~-~--~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disv 263 (333)
T 3jvd_A 198 HAASIYGAEVT--FHFG-H--YSVESGEEMAQVVFNNGLPDALI-VASPRLMAGVMRAFTRLNVRVPHDVVI 263 (333)
T ss_dssp HHHHHTTCEEE--EEEC-C--SSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHCCCCEE--EecC-C--CCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 99999998721 1111 1 12444445555554433 56555 455667788999999999875544433
No 140
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.15 E-value=0.047 Score=53.37 Aligned_cols=208 Identities=12% Similarity=-0.002 Sum_probs=111.2
Q ss_pred ceEEEEEEeec---CC-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 006916 25 EVLNVGAIFSF---GT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (625)
Q Consensus 25 ~~i~IG~l~~~---~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~ 100 (625)
++.+||+++|. +. .+-.....+++.+.++. |+++.+ .++..+. ...+....++++++.+||....
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~--------g~~~~~--~~~~~~~-~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN--------NAKCKY--VTASTDA-EYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT--------TCEEEE--EECCSGG-GHHHHHHHHHHTTCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh--------CCeEEE--EeCCCHH-HHHHHHHHHHHcCCCEEEECCh
Confidence 46789999982 22 22223344554444442 455544 3333222 2334556677778888886432
Q ss_pred hHHHHHHHHhhhcC-CCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHH----HHHHHHcCC-cEEEEEEecC-CCCc
Q 006916 101 AVMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAI----AEMVSYFGW-GEVIAIFNDD-DQGR 173 (625)
Q Consensus 101 s~~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al----~~ll~~~~W-~~v~ii~~d~-~~g~ 173 (625)
.. ...+..++..+ ++|++......+. . +.+-.... +..++..+ +..+...|- ++|++|.... ....
T Consensus 72 ~~-~~~~~~~a~~~p~~p~v~id~~~~~--~---~~~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~ 144 (318)
T 2fqx_A 72 FL-VEAVIETSARFPKQKFLVIDAVVQD--R---DNVVSAVF-GQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMP 144 (318)
T ss_dssp TT-HHHHHHHHHHCTTSCEEEESSCCCS--C---TTEEEEEE-CHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTH
T ss_pred hH-HHHHHHHHHHCCCCEEEEEcCccCC--C---CCEEEEEe-chHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHH
Confidence 21 12244555544 8999876432210 1 12111222 33333333 466666776 8999998643 2234
Q ss_pred chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEee
Q 006916 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (625)
Q Consensus 174 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (625)
...+.+.+.+++.|..+.....+... ..+...-....+++.+.++++|+.. ....+..+++++++.|+. +.-+++..
T Consensus 145 ~r~~Gf~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~~-~d~~a~Gv~~a~~e~g~~-P~dv~viG 221 (318)
T 2fqx_A 145 LFEAGFEAGVKAVDPDIQVVVEVANT-FSDPQKGQALAAKLYDSGVNVIFQV-AGGTGNGVIKEARDRRLN-GQDVWVIG 221 (318)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECSC-SSCHHHHHHHHHHHHHTTCCEEEEE-CGGGHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEccC-ccCHHHHHHHHHHHHHCCCcEEEEC-CCCCchHHHHHHHhhhhc-cCCcEEEE
Confidence 55778888888877543322222211 0122333445555555678876644 445677788899888876 54455543
No 141
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.13 E-value=0.037 Score=54.92 Aligned_cols=205 Identities=9% Similarity=-0.013 Sum_probs=112.3
Q ss_pred CceEEEEEEeecCC-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCC-hHHHHHHHHHHHhcCcEEEE--cCC
Q 006916 24 PEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFN-GFLSIMGALQFMETDTLAIV--GPQ 99 (625)
Q Consensus 24 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~-~~~a~~~~~~l~~~~v~avi--G~~ 99 (625)
....+||+++|.-. .+-.....+++-+.++ .|+.+.+. ++..+ +..-.+....++.+++.++| ++.
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~--~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~ 128 (349)
T 1jye_A 59 KQSLLIGVATSSLALHAPSQIVAAILSRADQ--------LGASVVVS--MVERSGVEACKTAVHNLLAQRVSGLIINYPL 128 (349)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEEE--ECCSSSHHHHHHHHHHHHTTTCSCEEEESCC
T ss_pred CCCCEEEEEeCCCCcccHHHHHHHHHHHHHH--------cCCEEEEE--eCCCCcHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 34678999998632 2112233444444433 15666543 33332 33333445556677777666 343
Q ss_pred ChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCC--CcchHH
Q 006916 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ--GRNGVT 177 (625)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~--g~~~~~ 177 (625)
.... .+...+...++|+|...... ....+ .....+..-+...++.|...|.++|++|...... .....+
T Consensus 129 ~~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~ 199 (349)
T 1jye_A 129 DDQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLA 199 (349)
T ss_dssp CHHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHH
T ss_pred CChh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHH
Confidence 3322 22233445789999864321 11222 2334455556666777777799999999865332 345577
Q ss_pred HHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 178 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
.|.+.+++.|+.+.....-. .+..+-...++++.+. .++.|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 200 Gf~~al~~~gi~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvv 271 (349)
T 1jye_A 200 GWHKYLTRNQIQPIAEREGD----WSAMSGFQQTMQMLNEGIVPTAML-VANDQMALGAMRAITESGLRVGADISVV 271 (349)
T ss_dssp HHHHHHHHTTCCCSEEEECC----SSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHHcCCCccccccCC----CChHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 88899999887543221111 1123333344444333 356555 4455668889999999998665544443
No 142
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.12 E-value=0.021 Score=56.12 Aligned_cols=206 Identities=7% Similarity=-0.034 Sum_probs=122.7
Q ss_pred ceEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChH
Q 006916 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAV 102 (625)
Q Consensus 25 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG-~~~s~ 102 (625)
+..+||+++|.. ..+-.....+++-+.++. |+++. +.++..++..-.+....++.+++.+||- |....
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~ 71 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEA--------GYKTD--LQYADDDIPNQLSQIENMVTKGVKVLVIASIDGT 71 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGG
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHc--------CCEEE--EeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCch
Confidence 356899999974 322234455665555552 55554 4456677777777778888889988874 44443
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHH-------cCCcEEEEEEecCC--CCc
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-------FGWGEVIAIFNDDD--QGR 173 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~-------~~W~~v~ii~~d~~--~g~ 173 (625)
........+...++|+|......+.. .... ......+...+...++.|.. .|-++++++..... ...
T Consensus 72 ~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~--~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~ 147 (330)
T 3uug_A 72 TLSDVLKQAGEQGIKVIAYDRLIRNS--GDVS--YYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAF 147 (330)
T ss_dssp GGHHHHHHHHHTTCEEEEESSCCCSC--TTCC--EEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHH
T ss_pred hHHHHHHHHHHCCCCEEEECCCCCCC--Ccee--EEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHH
Confidence 44444556677899999875543221 1122 23344566667777777776 68889999975432 234
Q ss_pred chHHHHHHHHhcc---c-eEEEEee-----ecCCCCCCChhHHHHHHHHHhc-----CCceEEEEEcchhhHHHHHHHHH
Q 006916 174 NGVTALGDKLAEI---R-CKISYKS-----ALPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDVAQ 239 (625)
Q Consensus 174 ~~~~~l~~~l~~~---g-~~v~~~~-----~~~~~~~~~~~~~~~~l~~i~~-----~~~~vIvl~~~~~~~~~il~~a~ 239 (625)
...+.+++.+++. | +.+.... ..... .+...-...++++.+ ..++.|+ +.+...+..++++++
T Consensus 148 ~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~nd~~A~g~~~al~ 224 (330)
T 3uug_A 148 FFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLR--WDPATAQARMDNLLSAYYTDAKVDAVL-SPYDGLSIGIISSLK 224 (330)
T ss_dssp HHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGG--GCHHHHHHHHHHHHHHHCSSSCCCEEE-CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCceEEeecccccccccCCC--CCHHHHHHHHHHHHHhcCCCCCeEEEE-ECCCchHHHHHHHHH
Confidence 5567888888876 3 4432110 00011 112333334444333 3455544 455567888999999
Q ss_pred HcCCCCCC
Q 006916 240 RLGMMDSG 247 (625)
Q Consensus 240 ~~g~~~~~ 247 (625)
+.|+..++
T Consensus 225 ~~g~~vP~ 232 (330)
T 3uug_A 225 GVGYGTKD 232 (330)
T ss_dssp HTTCSSSS
T ss_pred HcCCCCCC
Confidence 99986543
No 143
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.07 E-value=0.026 Score=55.97 Aligned_cols=203 Identities=14% Similarity=0.029 Sum_probs=113.2
Q ss_pred CCCceEEEEEEeecC---CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcC
Q 006916 22 LKPEVLNVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGP 98 (625)
Q Consensus 22 ~~~~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~ 98 (625)
...++++||++++-. ..+-.....+++.+.++.+ -++++.+.++..+.....+...+++++++.+||+.
T Consensus 22 ~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G--------~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~ 93 (356)
T 3s99_A 22 MAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALG--------DKVETTFLENVAEGADAERSIKRIARAGNKLIFTT 93 (356)
T ss_dssp ----CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT--------TTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEEC
T ss_pred ccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhC--------CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEC
Confidence 456789999999742 2223344566666666542 12556666665555555667778888899999986
Q ss_pred CChHHHHHHHHhhhcC-CCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCC-CcchH
Q 006916 99 QSAVMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ-GRNGV 176 (625)
Q Consensus 99 ~~s~~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~-g~~~~ 176 (625)
. .....++..++..+ ++|++......+ .+.-..++++.. ....++-.++.++.+ =++|++|...... .....
T Consensus 94 g-~~~~~~~~~vA~~~Pdv~fv~id~~~~--~~Nv~sv~~~~~-eg~ylaG~~A~~~tk--~~kIGfVgg~~~p~v~~~~ 167 (356)
T 3s99_A 94 S-FGYMDPTVKVAKKFPDVKFEHATGYKT--ADNMSAYNARFY-EGRYVQGVIAAKMSK--KGIAGYIGSVPVPEVVQGI 167 (356)
T ss_dssp S-GGGHHHHHHHHTTCTTSEEEEESCCCC--BTTEEEEEECHH-HHHHHHHHHHHHHCS--SCEEEEEECCCCHHHHHHH
T ss_pred C-HHHHHHHHHHHHHCCCCEEEEEecccc--CCcEEEEEechh-HHHHHHHHHHHHhcC--CCEEEEECCCccHHHHHHH
Confidence 4 34445667777665 788876533211 111122334432 112222223333322 4799999864322 22346
Q ss_pred HHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcC
Q 006916 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 242 (625)
Q Consensus 177 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g 242 (625)
..|.+.++..+..+.....+... ..+...-.+..+.+.+.++++|+...... .++++|++.|
T Consensus 168 ~GF~~G~k~~np~i~v~~~~~g~-~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~G 229 (356)
T 3s99_A 168 NSFMLGAQSVNPDFRVKVIWVNS-WFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRG 229 (356)
T ss_dssp HHHHHHHHTTCTTCEEEEEECSS-SCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCEEEEEECCC-CCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcC
Confidence 67778887765443322222211 12334445566666677899887766553 5788888876
No 144
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=97.03 E-value=0.14 Score=49.45 Aligned_cols=196 Identities=10% Similarity=-0.020 Sum_probs=106.6
Q ss_pred ceEEEEEEeec--CC-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 006916 25 EVLNVGAIFSF--GT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (625)
Q Consensus 25 ~~i~IG~l~~~--~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s 101 (625)
++.+||+++|. +. .+-.....+++.+.++. |+++. +.++..++....+....++++++.+||.....
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL--------DVDVV--LEEGVNSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHS--------CCEEE--EECCCCSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh--------CCeEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 46789999973 22 33334455665555542 45553 34444444444455566777899999975432
Q ss_pred HHHHHHHHhhhcC-CCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHc-CCcEEEEEEecCCCCcchHHHH
Q 006916 102 VMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-GWGEVIAIFNDDDQGRNGVTAL 179 (625)
Q Consensus 102 ~~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~-~W~~v~ii~~d~~~g~~~~~~l 179 (625)
....+..++..+ ++|++...... .. +.+-.....+..-+.....++.+. +-++|++|...... . ..+.+
T Consensus 74 -~~~~~~~~~~~~p~~p~v~id~~~---~~---~~~~~v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~-~-r~~Gf 144 (296)
T 2hqb_A 74 -FAEYFSTIHNQYPDVHFVSFNGEV---KG---ENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQ-P-EVEGF 144 (296)
T ss_dssp -HHHHHHTTTTSCTTSEEEEESCCC---CS---SSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEESCTTC-H-HHHHH
T ss_pred -HHHHHHHHHHHCCCCEEEEEecCc---CC---CCEEEEEechHHHHHHHHHHHHhhccCCeEEEEcCcCch-h-hHHHH
Confidence 233355555544 78988764321 11 122122222222222233334442 55899999865332 2 77889
Q ss_pred HHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcC
Q 006916 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 242 (625)
Q Consensus 180 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g 242 (625)
.+.+++.|.. .....+... ..+...-....+++.+.++++|+ +.....+..+++++++.|
T Consensus 145 ~~~~~~~~~~-~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~-~~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 145 VDGAKYMNES-EAFVRYVGE-WTDADKALELFQELQKEQVDVFY-PAGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHTTCC-EEEEEECSS-SSCHHHHHHHHHHHHTTTCCEEE-CCCTTTHHHHHHHHHHHT
T ss_pred HHHHHHhCCC-eEEEEeecc-ccCHHHHHHHHHHHHHCCCcEEE-ECCCCCCHHHHHHHHHcC
Confidence 9999988864 322222211 01233344555666556788665 444556677888998887
No 145
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=96.99 E-value=0.0014 Score=63.78 Aligned_cols=209 Identities=10% Similarity=0.010 Sum_probs=122.0
Q ss_pred CCceEEEEEEeecCC-CCch-hHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 006916 23 KPEVLNVGAIFSFGT-VNGQ-VSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (625)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~-~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~ 100 (625)
....-+||+++|... .+-. ....+++-+.++. |+.+.+ .++..++....+....++.+++.+||-...
T Consensus 10 ~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 10 SSRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN--------GKTILI--ANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp --CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred hCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 445678999999742 3323 5667776666652 566654 555566666666666677778887764222
Q ss_pred hHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCC--CcchHHH
Q 006916 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ--GRNGVTA 178 (625)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~--g~~~~~~ 178 (625)
.... ....+...++|+|......+.. .. +.....++...+...++.|...|-++|++|...... .....+.
T Consensus 80 ~~~~--~~~~~~~~~iPvV~~~~~~~~~--~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 152 (301)
T 3miz_A 80 YRRI--VDPESGDVSIPTVMINCRPQTR--EL---LPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDA 152 (301)
T ss_dssp EEEE--CCCCCTTCCCCEEEEEEECSST--TS---SCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHH
T ss_pred CccH--HHHHHHhCCCCEEEECCCCCCC--CC---CCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHH
Confidence 2111 3345567799999875433211 01 223445666677888888888999999999865432 3456788
Q ss_pred HHHHHhccceEEEEeeecCC---CCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeE
Q 006916 179 LGDKLAEIRCKISYKSALPP---DQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 249 (625)
Q Consensus 179 l~~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~ 249 (625)
+.+.+++.|+.+.....+.. ............++++.+. .++.|+ +.+...+..+++++++.|+..++-+
T Consensus 153 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di 227 (301)
T 3miz_A 153 FRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIM-SGNDEMAIQIYIAAMALGLRIPQDV 227 (301)
T ss_dssp HHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEE-ESSHHHHHHHHHHHHTTTCCHHHHC
T ss_pred HHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCCe
Confidence 88999988875321111111 1001111111333333332 456554 4555678889999999987644333
No 146
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=96.47 E-value=0.056 Score=54.03 Aligned_cols=212 Identities=8% Similarity=0.001 Sum_probs=114.9
Q ss_pred CceEEEEEEeecCCC--CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 006916 24 PEVLNVGAIFSFGTV--NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (625)
Q Consensus 24 ~~~i~IG~l~~~~~~--~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s 101 (625)
...-+||+++|.... ........+..++++.=+ |+.+.+...+...+. .-.+....+..+++.+||-....
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~------g~~~~~~~~~~~~~~-~~~~~~~~l~~~~vdGiIi~~~~ 138 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG------DTQLTLIPASPASSV-DHVSAQQLVNNAAVDGVVIYSVA 138 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS------SCEEEEEECCCCTTC-CHHHHHHHHHTCCCSCEEEESCC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh------hCCEEEEEcCCCccH-HHHHHHHHHHhCCCCEEEEecCC
Confidence 346789999997421 111233334444444311 567766555433221 12233444556677766532212
Q ss_pred HHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEec-------------
Q 006916 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND------------- 168 (625)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d------------- 168 (625)
.... ....+...++|+|...... .....++ ...++..-+...++.|...|-+++++|...
T Consensus 139 ~~~~-~~~~l~~~~iPvV~i~~~~---~~~~~~~---V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~ 211 (366)
T 3h5t_A 139 KGDP-HIDAIRARGLPAVIADQPA---REEGMPF---IAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRE 211 (366)
T ss_dssp TTCH-HHHHHHHHTCCEEEESSCC---SCTTCCE---EEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHH
T ss_pred CChH-HHHHHHHCCCCEEEECCcc---CCCCCCE---EEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccc
Confidence 1112 2334455699999865422 1122232 345566667778888888999999999832
Q ss_pred ------CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHH
Q 006916 169 ------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQR 240 (625)
Q Consensus 169 ------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~ 240 (625)
........+.+.+.+++.|+.+.....+... ..+...-...++++.+ ..++.|+ +.+...+..+++++++
T Consensus 212 ~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~ 289 (366)
T 3h5t_A 212 RLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECW-INNRQHNFEVAKELLETHPDLTAVL-CTVDALAFGVLEYLKS 289 (366)
T ss_dssp HHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEES-SCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcC-CCCHHHHHHHHHHHHcCCCCCcEEE-ECCcHHHHHHHHHHHH
Confidence 2233456788999999988753211001100 0123333344444432 3456555 4555677889999999
Q ss_pred cCCCCCCeEEE
Q 006916 241 LGMMDSGYVWI 251 (625)
Q Consensus 241 ~g~~~~~~~~i 251 (625)
.|+..++-+-|
T Consensus 290 ~G~~vP~disv 300 (366)
T 3h5t_A 290 VGKSAPADLSL 300 (366)
T ss_dssp TTCCTTTTCEE
T ss_pred cCCCCCCceEE
Confidence 99875543333
No 147
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=96.30 E-value=0.15 Score=50.14 Aligned_cols=216 Identities=12% Similarity=0.052 Sum_probs=123.1
Q ss_pred CceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCC-----CCcEEEEEEecCCCChH-----HHHHHHHHHHhc-Cc
Q 006916 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVL-----GGRKLSITMHDAKFNGF-----LSIMGALQFMET-DT 92 (625)
Q Consensus 24 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL-----~g~~l~~~~~D~~~~~~-----~a~~~~~~l~~~-~v 92 (625)
..+++||++.+.-+ .+....++++-.+++-|..++.. ....++.++..+-.+++ .+++...++..+ ++
T Consensus 10 ~~~~~igi~t~t~s-~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gy 88 (371)
T 3qi7_A 10 IDDFKVAVVTQPLS-ENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEV 88 (371)
T ss_dssp CCCEEEEEEECCTT-TCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTE
T ss_pred CCCeEEEEEcCCcC-CCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCC
Confidence 35799999977643 24577888999999998754321 01234555555433332 234555555554 77
Q ss_pred EEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCC--CCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC
Q 006916 93 LAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPL--QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD 170 (625)
Q Consensus 93 ~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~--~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~ 170 (625)
.+||..............+.+.+++.|-..+....-... .+.. +.....+..-+...++.|...|-+++++|.....
T Consensus 89 k~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~ 167 (371)
T 3qi7_A 89 QAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYASTDD 167 (371)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEETTG
T ss_pred eEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 777754333222333455666666655443321110000 0111 2344455555666778999999999999987542
Q ss_pred C----CcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHH-H--------hcCCceEEEEEcchhhHHHHHHH
Q 006916 171 Q----GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK-V--------RMMEARVIVVHGYSRTGLMVFDV 237 (625)
Q Consensus 171 ~----g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~-i--------~~~~~~vIvl~~~~~~~~~il~~ 237 (625)
. .....+.+++.+++.|+.........+. ....+ ...++ | ++.+...-|.+++...+..++++
T Consensus 168 ~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~t---~e~G~-~~a~~lL~~~~~~~~~~~~~~TAIFatND~mAiG~ika 243 (371)
T 3qi7_A 168 LKDVNIAKRLEMIKETCKNIGLPFVQVNTPNIN---TEEDK-NKVKQFLNEDIEKQVKKYGKDINVFGVNEYMDEVILTK 243 (371)
T ss_dssp GGSHHHHHHHHHHHHHHHHTTCCEEEEEECCCS---STHHH-HHHHHHHHHHHHHHHHHHCSCCEEEESSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHcCCCceeecCCCCc---hHHHH-HHHHHHHhccccchhhccCCCcEEEECCHHHHHHHHHH
Confidence 2 2336778999999999987654322222 12222 22222 2 12122234556677789999999
Q ss_pred HHHcCCCC
Q 006916 238 AQRLGMMD 245 (625)
Q Consensus 238 a~~~g~~~ 245 (625)
+.+.|...
T Consensus 244 l~e~Gi~V 251 (371)
T 3qi7_A 244 ALELKYIV 251 (371)
T ss_dssp HHHHCCBB
T ss_pred HHHcCCcc
Confidence 99999653
No 148
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=96.20 E-value=0.11 Score=48.15 Aligned_cols=127 Identities=11% Similarity=-0.002 Sum_probs=86.6
Q ss_pred HHHHHHhcCcEEEEcCCChHHH--------HHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH
Q 006916 83 GALQFMETDTLAIVGPQSAVMA--------HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV 154 (625)
Q Consensus 83 ~~~~l~~~~v~aviG~~~s~~~--------~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll 154 (625)
++..|...++.+|+-+-++.+. .....+.+..++|.++. ..++++.+
T Consensus 58 aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~~~al 112 (240)
T 3ixl_A 58 HARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAVLNGL 112 (240)
T ss_dssp HHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHHHHHH
T ss_pred HHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHHHHHH
Confidence 3445555588888765444333 33455666778999862 57888889
Q ss_pred HHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCC-----CCChhHHHHHHHH-H-hcCCceEEEEEcc
Q 006916 155 SYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVK-V-RMMEARVIVVHGY 227 (625)
Q Consensus 155 ~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~~~~~~l~~-i-~~~~~~vIvl~~~ 227 (625)
++.|-++|+++.. |.....+.+++.+++.|+++.......... ..+...+.+.+++ + +..+++.||+.|.
T Consensus 113 ~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~CT 189 (240)
T 3ixl_A 113 RALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSSG 189 (240)
T ss_dssp HHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEECT
T ss_pred HHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeCC
Confidence 9999999999974 666667888899999999987655433221 1235567777888 7 6778999999876
Q ss_pred hhhHHHHHHH
Q 006916 228 SRTGLMVFDV 237 (625)
Q Consensus 228 ~~~~~~il~~ 237 (625)
.-....++.+
T Consensus 190 ~l~~l~~i~~ 199 (240)
T 3ixl_A 190 GLLTLDAIPE 199 (240)
T ss_dssp TSCCTTHHHH
T ss_pred CCchhhhHHH
Confidence 6433333333
No 149
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=94.39 E-value=0.024 Score=55.19 Aligned_cols=92 Identities=16% Similarity=0.112 Sum_probs=60.5
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+||+. |.+.|+.... . -.+|++.+++++|.+ ++++.. .+|++++..|.+|++|+++.+
T Consensus 3 ~~~l~iG~~--p~~~p~~~~~----~----~~~l~~~l~k~lG~~--ve~~~~------~~~~~~i~al~~G~vDi~~~~ 64 (310)
T 3n5l_A 3 QPVINFGII--STESSQNLKS----I----WEPFLKDMSQQTGYQ--VKAFFA------PDYAGIIQGMRFDKVDIAWYG 64 (310)
T ss_dssp CCEEEEEEC--CSSCHHHHHH----H----HHHHHHHHHHHHSSE--EEEECC------SSHHHHHHHHHTTSCSEEECC
T ss_pred CcEEEEEEe--cCCCHHHHHH----H----HHHHHHHHHHHhCCC--EEEEeC------CCHHHHHHHHHcCCCCEEEEC
Confidence 367999996 4444443321 1 148999999999988 677654 459999999999999999755
Q ss_pred -eeeecc--cccceEeccccc-----ccceEEEEecCC
Q 006916 541 -IAIVTN--RTKAVDFTQPYI-----ESGLVVVAPVRK 570 (625)
Q Consensus 541 -~~~t~~--R~~~vdfs~p~~-----~~~~~~l~~~~~ 570 (625)
.++... |.....|+.|+. .....++++..+
T Consensus 65 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds 102 (310)
T 3n5l_A 65 NKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDS 102 (310)
T ss_dssp HHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTC
T ss_pred cHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCC
Confidence 344333 344556665431 112366776654
No 150
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=93.05 E-value=2 Score=40.46 Aligned_cols=118 Identities=17% Similarity=0.083 Sum_probs=75.0
Q ss_pred HHHHHhcCcEEEEcCCChHHHH--------HHHHhhhcC-----CCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHH
Q 006916 84 ALQFMETDTLAIVGPQSAVMAH--------VLSHLANEL-----QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAI 150 (625)
Q Consensus 84 ~~~l~~~~v~aviG~~~s~~~~--------~va~~~~~~-----~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al 150 (625)
+..+...++.+|+-+.++.... ....+.+.. ++|+++. ..++
T Consensus 83 a~~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~-------------------------~~A~ 137 (273)
T 2xed_A 83 VLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSS-------------------------AGAL 137 (273)
T ss_dssp HHHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEH-------------------------HHHH
T ss_pred HHHHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecH-------------------------HHHH
Confidence 3344445888887654443221 124444455 8998862 3566
Q ss_pred HHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCC-----CCChhHHHHHHHHHhcCCceEEEEE
Q 006916 151 AEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVKVRMMEARVIVVH 225 (625)
Q Consensus 151 ~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~~~~~~l~~i~~~~~~vIvl~ 225 (625)
++.++..|-++|+++. .|.....+.+.+.+++.|+++.......... ..+...+.+.++++...++++||+.
T Consensus 138 ~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvLg 214 (273)
T 2xed_A 138 VEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVIS 214 (273)
T ss_dssp HHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEEE
T ss_pred HHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEEc
Confidence 6667778889999996 3444455688888888999886554433210 1134456677777766778888888
Q ss_pred -cchh
Q 006916 226 -GYSR 229 (625)
Q Consensus 226 -~~~~ 229 (625)
|..-
T Consensus 215 ~CT~l 219 (273)
T 2xed_A 215 CAVQM 219 (273)
T ss_dssp SSSSS
T ss_pred CCCCc
Confidence 7653
No 151
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=92.60 E-value=0.13 Score=50.10 Aligned_cols=92 Identities=13% Similarity=0.115 Sum_probs=59.6
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe-
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG- 539 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~- 539 (625)
.++|++|+. |.+.|... ...--+|+++|++++|.+ ++++.. .+|++++..|..|++|+++.
T Consensus 13 ~~~l~~Gv~--p~~~~~~~--------~~~~~~l~~~L~k~lG~~--ve~~~~------~~~~~~i~aL~~G~vDia~~~ 74 (321)
T 3p7i_A 13 EKALNFGII--STESQQNL--------KPQWTPFLQDMEKKLGVK--VNAFFA------PDYAGIIQGMRFNKVDIAWYG 74 (321)
T ss_dssp -CCEEEEEC--CSSCHHHH--------HHHHHHHHHHHHHHHTSC--EEEECC------SSHHHHHHHHHTTSCSEEECC
T ss_pred CCcEEEEEe--cCCCHHHH--------HHHHHHHHHHHHHHHCCC--EEEEec------CCHHHHHHHHHcCCCcEEEEC
Confidence 467999995 33333221 111237999999999988 777653 45999999999999999975
Q ss_pred eeeeecc--cccceEeccccc-----ccceEEEEecCC
Q 006916 540 DIAIVTN--RTKAVDFTQPYI-----ESGLVVVAPVRK 570 (625)
Q Consensus 540 ~~~~t~~--R~~~vdfs~p~~-----~~~~~~l~~~~~ 570 (625)
+.+++.. |.....|..|+. .....++++..+
T Consensus 75 ~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~ds 112 (321)
T 3p7i_A 75 NLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDS 112 (321)
T ss_dssp HHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETTC
T ss_pred hHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECCC
Confidence 4555544 334455654421 112467777654
No 152
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=89.33 E-value=4.5 Score=36.83 Aligned_cols=165 Identities=13% Similarity=0.077 Sum_probs=84.6
Q ss_pred ceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC----ChH-------HHHHHHHHHHhcCcE
Q 006916 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF----NGF-------LSIMGALQFMETDTL 93 (625)
Q Consensus 25 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~----~~~-------~a~~~~~~l~~~~v~ 93 (625)
...+||+|.|.++.. ..+ .++...++-+. +|+..+.+.-..... +.. ...+.+..+...++.
T Consensus 5 ~~~~ig~i~p~~~~~--~~e--~~~~~~~~~~~---~p~~~i~~~~~p~g~~~~~~~~~~~~~~~~l~~~~~~l~~~g~d 77 (228)
T 2eq5_A 5 DKYTIGLIRVITLED--KEI--LNLHGRIIESA---FPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEFEREGVD 77 (228)
T ss_dssp -CEEEEEEESSCCCC--HHH--HTHHHHHHHHH---CTTEEEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred cceEEEEEeccCccC--HHH--HHHHHHHHHhh---CCCCeEEEEeCCCCchhccccccHHHhHHHHHHHHHHHHHCCCC
Confidence 357899999987221 111 11222222222 367777764333221 111 111223344456888
Q ss_pred EEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCc
Q 006916 94 AIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGR 173 (625)
Q Consensus 94 aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~ 173 (625)
+|+-+-++. ..+..+-+..++|+++. .++.++.....+ ++|+++......
T Consensus 78 ~iviaCnta--~~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~-~rigVlat~~t~-- 127 (228)
T 2eq5_A 78 AIIISCAAD--PAVEKVRKLLSIPVIGA-------------------------GSSVSALALAYG-RRVGVLNLTEET-- 127 (228)
T ss_dssp EEEECSTTC--TTHHHHHHHCSSCEEEH-------------------------HHHHHHHHHTTC-SSEEEECSSSCC--
T ss_pred EEEEeCCch--HHHHHHHHhCCCCEeCc-------------------------cHHHHHHHHHhC-CeEEEEecCccc--
Confidence 887655444 44555666778998863 122222233466 899999875432
Q ss_pred chHHHHHHHH-hccceEEEEeeec---CCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006916 174 NGVTALGDKL-AEIRCKISYKSAL---PPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 174 ~~~~~l~~~l-~~~g~~v~~~~~~---~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
. ..+++.+ ++.|..+...... ..........+.+.++++.+.++++||+.|..
T Consensus 128 -~-~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~ 184 (228)
T 2eq5_A 128 -P-KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTG 184 (228)
T ss_dssp -C-HHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTH
T ss_pred -H-HHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 1 3567788 7777664221100 00000012334555566665678888887765
No 153
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=87.89 E-value=10 Score=36.36 Aligned_cols=126 Identities=8% Similarity=-0.020 Sum_probs=77.3
Q ss_pred EEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHHHHH
Q 006916 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (625)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~~~v 107 (625)
+||.+.............|++.++++.| +..++......+-.++..+.+.+.+++++++.+|+...... +..+
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~~-a~Gv 203 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVD------PDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAGGT-GNGV 203 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHC------TTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEECGGG-HHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHC------CCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECCCCC-chHH
Confidence 6777765543334566899999999986 24555554443334677888888999998999998755433 3333
Q ss_pred HHhhhc-----CCCcEEeeccCCCCCCC---CCCCceEEccCchHHHHHHHHHHHHHcCCc
Q 006916 108 SHLANE-----LQVPLLSFTALDPTLSP---LQYPFFVQTAPNDLYLMSAIAEMVSYFGWG 160 (625)
Q Consensus 108 a~~~~~-----~~iP~Is~~~~~~~ls~---~~~~~~~r~~ps~~~~~~al~~ll~~~~W~ 160 (625)
...+.. .++-+|.+......... ...|.+..+..+-...+...++.+..-.|+
T Consensus 204 ~~a~~e~g~~P~dv~viG~D~~~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 204 IKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhhhccCCcEEEEEecchhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCCC
Confidence 334443 57778887553221110 023555555555566666666666665564
No 154
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=85.97 E-value=7.5 Score=38.15 Aligned_cols=90 Identities=9% Similarity=-0.011 Sum_probs=66.4
Q ss_pred eEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHHH
Q 006916 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (625)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~~ 105 (625)
.=+||.+-......-.....|+..++++.| |..++.+.+..+-.|+..+.+.+..++++++.+|+......
T Consensus 149 ~~kIGfVgg~~~p~v~~~~~GF~~G~k~~n------p~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~--- 219 (356)
T 3s99_A 149 KGIAGYIGSVPVPEVVQGINSFMLGAQSVN------PDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST--- 219 (356)
T ss_dssp SCEEEEEECCCCHHHHHHHHHHHHHHHTTC------TTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---
T ss_pred CCEEEEECCCccHHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---
Confidence 346788876643323345789999999877 46777777766667899999999999999999998765543
Q ss_pred HHHHhhhcCCCcEEeeccC
Q 006916 106 VLSHLANELQVPLLSFTAL 124 (625)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~ 124 (625)
.+...+.+.++..|.+...
T Consensus 220 Gv~~aa~e~Gv~vIG~D~d 238 (356)
T 3s99_A 220 AAIQVAHDRGIKAFGQASD 238 (356)
T ss_dssp HHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHcCCEEEEEcCc
Confidence 3456667788988887544
No 155
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=85.20 E-value=0.62 Score=44.77 Aligned_cols=78 Identities=6% Similarity=-0.045 Sum_probs=58.3
Q ss_pred ceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee-eeee---cccccceEeccccccc
Q 006916 485 DIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD-IAIV---TNRTKAVDFTQPYIES 560 (625)
Q Consensus 485 ~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~-~~~t---~~R~~~vdfs~p~~~~ 560 (625)
..+.|+-+.+-+.+.++.|++ ++++.. +....++..|.+|++|+++++ .++. .++...+.++.++...
T Consensus 15 ~~~~~~~va~~~g~~~~~Gl~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 86 (302)
T 3ix1_A 15 AVHTFLYVAIENGYFAEEGLD--VDIVFP------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSP 86 (302)
T ss_dssp GGGHHHHHHHHTTHHHHTTEE--EEEECC------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSC
T ss_pred cccHHHHHHHHcChHHHcCCc--EEEecC------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccC
Confidence 455788888888899999987 666653 334589999999999999887 2333 3334567777778777
Q ss_pred ceEEEEecCC
Q 006916 561 GLVVVAPVRK 570 (625)
Q Consensus 561 ~~~~l~~~~~ 570 (625)
+..+++++.+
T Consensus 87 ~~~l~~~~~s 96 (302)
T 3ix1_A 87 LNHVMFLAEQ 96 (302)
T ss_dssp CEEEEEEGGG
T ss_pred CEEEEEECCC
Confidence 8899987653
No 156
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=83.47 E-value=4.4 Score=40.43 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=61.8
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCCc--chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 006916 149 AIAEMVSYFGWGEVIAIFNDDDQGR--NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (625)
Q Consensus 149 al~~ll~~~~W~~v~ii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 226 (625)
.+.++++.+|.+++.||++...... ...+.+.+.+++.|+++.....+... .+.+.+...++.+++.+++.||-.+
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavG 100 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPN--PKDTNVRDGLAVFRREQCDIIVTVG 100 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4667788889899988886554444 36889999999989876432233333 5677888889999989999999765
Q ss_pred ch--hhHHHHHHHH
Q 006916 227 YS--RTGLMVFDVA 238 (625)
Q Consensus 227 ~~--~~~~~il~~a 238 (625)
.+ -++..++...
T Consensus 101 GGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 101 GGSPHDCGKGIGIA 114 (387)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHH
Confidence 54 4555555444
No 157
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=83.16 E-value=11 Score=33.91 Aligned_cols=80 Identities=5% Similarity=-0.111 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCC-----CCChhHHHHHHHHHhcC--Cc
Q 006916 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVKVRMM--EA 219 (625)
Q Consensus 147 ~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~~~~~~l~~i~~~--~~ 219 (625)
..++++.++..|-++|+++. .|.....+.+++.+++.|+++.......... ..+...+.+.++++.+. ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 45666667778889999996 3454556677888898999876554333210 01234456666666555 78
Q ss_pred eEEEEEcchh
Q 006916 220 RVIVVHGYSR 229 (625)
Q Consensus 220 ~vIvl~~~~~ 229 (625)
++||+.|..-
T Consensus 173 daIvLgCT~l 182 (223)
T 2dgd_A 173 DAVYIACTAL 182 (223)
T ss_dssp SEEEECCTTS
T ss_pred CEEEEeCCcc
Confidence 8888876653
No 158
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=82.57 E-value=11 Score=34.24 Aligned_cols=80 Identities=13% Similarity=0.209 Sum_probs=47.4
Q ss_pred HHHHHHHhcCcEEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcE
Q 006916 82 MGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGE 161 (625)
Q Consensus 82 ~~~~~l~~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~ 161 (625)
+.+..+...++.+|+-+-++.. ..+..+-+..++|++.. .++.++.+...+-++
T Consensus 65 ~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~r 118 (228)
T 1jfl_A 65 WTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIISM-------------------------IEETAKKVKELGFKK 118 (228)
T ss_dssp HHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCSE
T ss_pred HHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEech-------------------------HHHHHHHHHHcCCCe
Confidence 3444454569999887666554 55566667778998852 123333333336678
Q ss_pred EEEEEecCCCCcchHHHHHHHHhccceEE
Q 006916 162 VIAIFNDDDQGRNGVTALGDKLAEIRCKI 190 (625)
Q Consensus 162 v~ii~~d~~~g~~~~~~l~~~l~~~g~~v 190 (625)
|+++...... ....+++.+++.|.++
T Consensus 119 igvlaT~~T~---~~~~y~~~l~~~g~~v 144 (228)
T 1jfl_A 119 AGLLATTGTI---VSGVYEKEFSKYGVEI 144 (228)
T ss_dssp EEEECCHHHH---HHTHHHHHHHHTTCEE
T ss_pred EEEEecHHHh---hhhHHHHHHHHCCCeE
Confidence 8888654321 1234566666677664
No 159
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=81.77 E-value=1.9 Score=42.28 Aligned_cols=69 Identities=7% Similarity=-0.048 Sum_probs=50.2
Q ss_pred HHHHHHHHCCCCccEEE--EeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeee----cccccceEecccccccceEEEEe
Q 006916 494 VFLAAVRLLPYAVPYKF--IPYGDGHKNPTYSELINQITTGVFDAAVGDIAIV----TNRTKAVDFTQPYIESGLVVVAP 567 (625)
Q Consensus 494 l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t----~~R~~~vdfs~p~~~~~~~~l~~ 567 (625)
+.+.+++. |++ +++ ..+. |.+..++..|..|++|+++.+.+.. .++.....++.++...+..++++
T Consensus 35 l~~~~~~~-G~~--v~~~~~~~~-----g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lvv~ 106 (348)
T 3uif_A 35 FPEELRKQ-GIK--VEWVPAAMA-----SVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLVVP 106 (348)
T ss_dssp HHHHHHHT-TEE--EEEEEECTT-----CHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEEEE
T ss_pred HHHHHHhc-CCe--EEEEecccC-----CCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEEEE
Confidence 45566655 766 666 4432 4467799999999999998665443 56677788878888888899998
Q ss_pred cCC
Q 006916 568 VRK 570 (625)
Q Consensus 568 ~~~ 570 (625)
+.+
T Consensus 107 ~~s 109 (348)
T 3uif_A 107 KNS 109 (348)
T ss_dssp TTC
T ss_pred CCC
Confidence 754
No 160
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=81.66 E-value=2.3 Score=41.41 Aligned_cols=65 Identities=9% Similarity=0.009 Sum_probs=51.0
Q ss_pred HHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeee----cccccceEecccccccceEEEEecCC
Q 006916 498 AVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIV----TNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 498 ~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t----~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
+.+..|++ +++++. +++..++..|.+|++|+++++.... .++.....|+.++...+..+++++.+
T Consensus 58 ~~~~~g~~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 126 (346)
T 3qsl_A 58 FFKDEGLD--VSIADF------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKN 126 (346)
T ss_dssp HHHHTTCE--EEEEEC------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTT
T ss_pred chHhhCCe--EEEEec------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCc
Confidence 34667877 666654 5599999999999999998876554 56778888988888778888887753
No 161
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=81.59 E-value=17 Score=34.34 Aligned_cols=121 Identities=8% Similarity=-0.028 Sum_probs=74.7
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHHHH
Q 006916 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (625)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~~~ 106 (625)
=+||.+...... . ...|++.++++.| +. +..+....+..++..+.+.+.+++++++.+|+..... .+..
T Consensus 127 ~~Ig~i~g~~~~--~-r~~Gf~~~~~~~~------~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~D~-~a~G 195 (296)
T 2hqb_A 127 HKVGVIAAFPWQ--P-EVEGFVDGAKYMN------ES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPAGDG-YHVP 195 (296)
T ss_dssp SEEEEEESCTTC--H-HHHHHHHHHHHTT------CC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECCCTT-THHH
T ss_pred CeEEEEcCcCch--h-hHHHHHHHHHHhC------CC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEECCCC-CCHH
Confidence 367877655322 1 6789999998876 23 4444443333467778888899998899999975443 3444
Q ss_pred HHHhhhcCCCcEEeeccCCCCCCCC-CCCceEEccCchHHHHHHHHHHHHHcCCcE
Q 006916 107 LSHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGE 161 (625)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~al~~ll~~~~W~~ 161 (625)
+...+.+.++.+|.+.. +. ... ..|.+..+..+-...+...++.+..-.|+.
T Consensus 196 v~~a~~e~Gv~viG~D~-~~--~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 196 VVEAIKDQGDFAIGYVG-DQ--ADLGGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHHHTCEEEEEES-CC--SSSSCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHHcCCEEEEEec-ch--hhhCCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 45556667888888765 22 221 124555555555555555555555556754
No 162
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=81.41 E-value=16 Score=27.85 Aligned_cols=96 Identities=13% Similarity=0.175 Sum_probs=61.6
Q ss_pred EEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc
Q 006916 137 VQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM 216 (625)
Q Consensus 137 ~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~ 216 (625)
|-...++.....-++.-++..|- ++.++|+|.+- .....-.+.+++.|+.+-. + .+..+++..+++|-.
T Consensus 5 fvvfssdpeilkeivreikrqgv-rvvllysdqde--krrrerleefekqgvdvrt---v-----edkedfrenireiwe 73 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDE--KRRRERLEEFEKQGVDVRT---V-----EDKEDFRENIREIWE 73 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCH--HHHHHHHHHHHTTTCEEEE---C-----CSHHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchH--HHHHHHHHHHHHcCCceee---e-----ccHHHHHHHHHHHHH
Confidence 33344566666777777788775 55688987652 2233334566788988753 2 236788887777754
Q ss_pred --CCceEEEEEc--chhhHHHHHHHHHHcCC
Q 006916 217 --MEARVIVVHG--YSRTGLMVFDVAQRLGM 243 (625)
Q Consensus 217 --~~~~vIvl~~--~~~~~~~il~~a~~~g~ 243 (625)
-+.+++++.. +.+-+..++.+|++.|.
T Consensus 74 rypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 74 RYPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp HCTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred hCCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 3445555543 33568899999999884
No 163
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=80.44 E-value=2.4 Score=42.22 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 006916 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (625)
Q Consensus 148 ~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 227 (625)
..+.++++.+|.+++.||++.........+.+.+.+++.|+.+.....+... .+.+.+.+.++.+++.+++.||-.+.
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 97 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPN--PTVTAVLEGLKILKDNNSDFVISLGG 97 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSS--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 4566778889999999998754322235788999999999877543344443 55778888888888889999888766
Q ss_pred h--hhHHHHHHHHH
Q 006916 228 S--RTGLMVFDVAQ 239 (625)
Q Consensus 228 ~--~~~~~il~~a~ 239 (625)
+ -++..++....
T Consensus 98 Gsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 98 GSPHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 5 34555554444
No 164
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=79.35 E-value=11 Score=34.11 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=46.7
Q ss_pred HHhcCcEEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEE
Q 006916 87 FMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIF 166 (625)
Q Consensus 87 l~~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~ 166 (625)
+...|+.+|+-+-++.... +..+-+..++|+++. .++.++-+...+-++|+++.
T Consensus 69 L~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i-------------------------~~a~~~~~~~~~~~rigvla 122 (226)
T 2zsk_A 69 LERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI-------------------------IDAVAEEILKRGVRKVLLLG 122 (226)
T ss_dssp HHHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCCEEEEES
T ss_pred HHHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCeEEEEe
Confidence 3345898888766555432 455556678888752 24444444555678999997
Q ss_pred ecCCCCcchHHHHHHHHhccceEEE
Q 006916 167 NDDDQGRNGVTALGDKLAEIRCKIS 191 (625)
Q Consensus 167 ~d~~~g~~~~~~l~~~l~~~g~~v~ 191 (625)
..... . ...+++.+++.|+++.
T Consensus 123 T~~T~--~-~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 123 TKTTM--T-ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp STTTT--S-CHHHHHHHHTTTCEEE
T ss_pred CHHHH--h-hhHHHHHHHHCCCEEE
Confidence 53322 1 2356777777787753
No 165
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=76.95 E-value=3.8 Score=39.79 Aligned_cols=90 Identities=9% Similarity=-0.032 Sum_probs=60.8
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHH----CCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccE
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRL----LPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDA 536 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~ 536 (625)
.++|++++. ++ .+.+..+...|.+.+.+. +|.+ +++.+. +...+.+..|.+|++|+
T Consensus 31 ~~~i~i~~g--~~----------gG~~~~~~~~la~~l~~~~~~~~g~~--v~v~~~------~g~~~~i~~l~~g~~D~ 90 (327)
T 4ddd_A 31 REYILIGTG--SM----------TGVYYPIGGSICRFIASDYGKDNKII--CSISST------TGSVYNLNSIRYSNMDI 90 (327)
T ss_dssp CEEEEEECC--CT----------TSSHHHHHHHHHHHHHHHHGGGTSEE--EEEECC------CCHHHHHHHHHTTSCSE
T ss_pred CeEEEEEeC--CC----------CCHHHHHHHHHHHHHHhccCCCCCeE--EEEEec------CcHHHHHHHHHcCCCcE
Confidence 366888883 11 244556667788888877 6766 666553 34778899999999999
Q ss_pred EEeeeeeec---------c---cccceEecccccccceEEEEecCC
Q 006916 537 AVGDIAIVT---------N---RTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 537 ~~~~~~~t~---------~---R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
++....+.. + ..+.+.+..++......++++...
T Consensus 91 ~~~~~~~~~~a~~g~~~f~~~~~~~d~~~v~~~~~~~~~lvv~~ds 136 (327)
T 4ddd_A 91 SIVQSDLEYYAYNGLGFYEKMLPMDNLRMLASLHKEYLTIVVKKSS 136 (327)
T ss_dssp EEEEHHHHHHHHHTCGGGTTSCCCTTEEEEEEEEEEEEEEEEETTS
T ss_pred EEECcHHHHHHHhCcCcccccCCCcchhehhccCCccEEEEEECCC
Confidence 987654321 1 234466666777788888887754
No 166
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=75.14 E-value=4.6 Score=40.23 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006916 149 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 149 al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
.+.++++.+|.+++.+|++.........+.+.+.+++.|+++.....+... .+.+.+.+.++.+++.++++||-.+.+
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGGG 98 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPN--PTITVVKEGLGVFQNSGADYLIAIGGG 98 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSS--CBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeCCh
Confidence 356677778889998887543322236788889998888876533334433 567788888888888889999976554
Q ss_pred --hhHHHHHHHHH
Q 006916 229 --RTGLMVFDVAQ 239 (625)
Q Consensus 229 --~~~~~il~~a~ 239 (625)
-++..++....
T Consensus 99 sv~D~aK~iA~~~ 111 (386)
T 1rrm_A 99 SPQDTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 45555655444
No 167
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=75.05 E-value=8.7 Score=38.52 Aligned_cols=87 Identities=11% Similarity=0.118 Sum_probs=59.2
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCCc-chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 006916 149 AIAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (625)
Q Consensus 149 al~~ll~~~~W~~v~ii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 227 (625)
.+.++++.+|.+++.||+++..... ...+.+.+.+++.|+++.....+.+. .+.+.+...++.+++.++++||-.+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 110 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPN--PVLSKVHEAVEVAKKEKVEAVLGVGG 110 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4567788889899988885332222 25788888898888876432222222 45778888888999899999997655
Q ss_pred h--hhHHHHHHH
Q 006916 228 S--RTGLMVFDV 237 (625)
Q Consensus 228 ~--~~~~~il~~ 237 (625)
+ -++..++..
T Consensus 111 GsviD~AK~iA~ 122 (407)
T 1vlj_A 111 GSVVDSAKAVAA 122 (407)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 4 345555544
No 168
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=74.26 E-value=1.8 Score=42.42 Aligned_cols=63 Identities=14% Similarity=0.313 Sum_probs=41.8
Q ss_pred HHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeec-ccccceEecccc--cccceEEEEecCC
Q 006916 500 RLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVT-NRTKAVDFTQPY--IESGLVVVAPVRK 570 (625)
Q Consensus 500 ~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~-~R~~~vdfs~p~--~~~~~~~l~~~~~ 570 (625)
+..|++ ++++.. ++|..++..|..|++|+++.+.+... .|.+-.++.... ...+..+++++.+
T Consensus 78 ~~~G~~--Ve~~~~------~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ivv~~~s 143 (341)
T 3un6_A 78 NHPKYK--LELVKF------NNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGM 143 (341)
T ss_dssp SSCSSE--EEEEEC------SSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEESCEECEEEEESTTC
T ss_pred HHcCCc--EEEEEc------CCHHHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEeecCCCceEEEEcCCC
Confidence 455666 777775 45999999999999999988775543 244444433221 2457778887643
No 169
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=73.11 E-value=17 Score=33.90 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=26.2
Q ss_pred HHHHHhcCcEEEEcCCChHHHHHHHHhhhcCCCcEEe
Q 006916 84 ALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (625)
Q Consensus 84 ~~~l~~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 120 (625)
+..+...++.+|+-+-++.++..+..+-+..++|+|.
T Consensus 58 ~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 94 (267)
T 2gzm_A 58 TEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVG 94 (267)
T ss_dssp HHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 3344456899988766555545667777788999996
No 170
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=72.03 E-value=70 Score=30.76 Aligned_cols=134 Identities=15% Similarity=0.236 Sum_probs=76.3
Q ss_pred eEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHHH
Q 006916 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (625)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~~ 105 (625)
.-.|+.+|...+. +.+.+|+.|+.++ +|..+.+...++.-.-.+.+.-+.+.++.-+++|+-=.. ...
T Consensus 63 gk~la~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~--~~~ 130 (339)
T 4a8t_A 63 NKSLGMIFQQSST---RTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVE--RHH 130 (339)
T ss_dssp TCEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECS--SHH
T ss_pred CceEEEEecCCCc---hHHHHHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecC--cHH
Confidence 3468888887653 7889999999985 455565433333322222333333344432334332111 123
Q ss_pred HHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHc--C--C--cEEEEEEecCCCCcchH
Q 006916 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYF--G--W--GEVIAIFNDDDQGRNGV 176 (625)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~--~--W--~~v~ii~~d~~~g~~~~ 176 (625)
.+..+++..++|+|.-+ + +...| .+++++++ +++ | . .+|+++. |- ....
T Consensus 131 ~~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~Ti~e~~~~G~~l~glkva~vG-D~---~rva 188 (339)
T 4a8t_A 131 SIVDLANCATIPVINGM--S----DYNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVG-DA---TQVC 188 (339)
T ss_dssp HHHHHHHHCSSCEEECC--C----SSCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEES-SC---CHHH
T ss_pred HHHHHHHhCCCCEEECC--C----CCcCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEEC-CC---chhH
Confidence 44556667789999732 1 22222 35666663 567 5 2 4777665 22 3567
Q ss_pred HHHHHHHhccceEEEEe
Q 006916 177 TALGDKLAEIRCKISYK 193 (625)
Q Consensus 177 ~~l~~~l~~~g~~v~~~ 193 (625)
..+...+...|.++...
T Consensus 189 ~Sl~~~~~~~G~~v~~~ 205 (339)
T 4a8t_A 189 FSLGLITTKMGMNFVHF 205 (339)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 77888888889887653
No 171
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=71.43 E-value=77 Score=30.70 Aligned_cols=134 Identities=15% Similarity=0.229 Sum_probs=81.1
Q ss_pred eEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHHH
Q 006916 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (625)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~~ 105 (625)
.-.|+.+|...+. +.+.+|+.|+.++ +|..+.+...++.-.-.+.+.-+.+.++.-+++|+-=.. ...
T Consensus 41 gK~la~lF~epST---RTR~SFE~A~~~L-------Gg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~--~~~ 108 (355)
T 4a8p_A 41 NKSLGMIFQQSST---RTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVE--RHH 108 (355)
T ss_dssp TCEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECS--SHH
T ss_pred CCEEEEEecCCCh---hhHhhHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecC--cHH
Confidence 3468888887653 7899999999995 456665543344333334455555666664555543221 223
Q ss_pred HHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHc--C--C--cEEEEEEecCCCCcchH
Q 006916 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYF--G--W--GEVIAIFNDDDQGRNGV 176 (625)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~--~--W--~~v~ii~~d~~~g~~~~ 176 (625)
.+..++...++|+|.-+ + +...| .+++++++ +++ | + .+|+++. | . ....
T Consensus 109 ~~~~lA~~~~vPVINag-~-----~~~HP------------tQaLaDl~TI~E~~~~G~~l~glkva~vG-D-~--~rva 166 (355)
T 4a8p_A 109 SIVDLANCATIPVINGM-S-----DYNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVG-D-A--TQVC 166 (355)
T ss_dssp HHHHHHHHCSSCEEECC-C-----SSCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEES-C-C--CHHH
T ss_pred HHHHHHHhCCCCEEeCC-C-----CCCCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEEC-C-C--chhH
Confidence 44556667789999732 1 22222 35666663 567 5 2 4777665 2 2 3567
Q ss_pred HHHHHHHhccceEEEEe
Q 006916 177 TALGDKLAEIRCKISYK 193 (625)
Q Consensus 177 ~~l~~~l~~~g~~v~~~ 193 (625)
..+...+...|.++...
T Consensus 167 ~Sl~~~~~~~G~~v~~~ 183 (355)
T 4a8p_A 167 FSLGLITTKMGMNFVHF 183 (355)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 77888888889887653
No 172
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=71.18 E-value=6 Score=39.35 Aligned_cols=75 Identities=8% Similarity=0.139 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006916 149 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 149 al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
.+.++++.+| +++.||++...+. ...+.+.+.+++ |+.+.+. .+... ...+.+...++.+++.++++||-.+.+
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~-~~~~~v~~~L~~-g~~~~~~-~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGGG 116 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFD-ALSERIGKSCGD-SLDIRFE-RFGGE--CCTSEIERVRKVAIEHGSDILVGVGGG 116 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHH-HHHHHC-------CCEEEEE-ECCSS--CSHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred HHHHHHHHcC-CEEEEEECchHHH-HHHHHHHHHHHc-CCCeEEE-EcCCC--CCHHHHHHHHHHHhhcCCCEEEEeCCc
Confidence 3566778889 9998888655433 356777888888 8887443 34444 456788888888888889998887766
Q ss_pred h
Q 006916 229 R 229 (625)
Q Consensus 229 ~ 229 (625)
.
T Consensus 117 s 117 (387)
T 3uhj_A 117 K 117 (387)
T ss_dssp H
T ss_pred H
Confidence 3
No 173
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=71.02 E-value=19 Score=30.92 Aligned_cols=65 Identities=12% Similarity=0.200 Sum_probs=48.4
Q ss_pred cEEEEEEecCCCCc---chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC-CceEEEEEcch
Q 006916 160 GEVIAIFNDDDQGR---NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGYS 228 (625)
Q Consensus 160 ~~v~ii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~vIvl~~~~ 228 (625)
-+++||...|+-|+ .....+.+.+++.|+++.....++.+ .+.+...+++..+. ++|+||..+..
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd----~~~i~~~l~~a~~~~~~DlVittGG~ 79 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN----RYAIRAQVSAWIASDDVQVVLITGGT 79 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 47888887666554 34567888999999998877777744 77888888887654 58999887543
No 174
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=70.41 E-value=14 Score=36.55 Aligned_cols=88 Identities=10% Similarity=0.098 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCc-chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 006916 148 SAIAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (625)
Q Consensus 148 ~al~~ll~~~~W~~v~ii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 226 (625)
..+.++++.+| +++.+|++...... ...+.+.+.+++.|+++.....+... .+.+.+.+.++.+++.++++||-.+
T Consensus 30 ~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavG 106 (371)
T 1o2d_A 30 EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEEN--PSFDNVMKAVERYRNDSFDFVVGLG 106 (371)
T ss_dssp HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSS--CBHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCC--CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34556677778 89998886544332 25788999998888876433334433 4577888899999988999999776
Q ss_pred ch--hhHHHHHHHH
Q 006916 227 YS--RTGLMVFDVA 238 (625)
Q Consensus 227 ~~--~~~~~il~~a 238 (625)
.+ -++..++...
T Consensus 107 GGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 107 GGSPMDFAKAVAVL 120 (371)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 54 3455555443
No 175
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=69.81 E-value=7.3 Score=36.43 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCcEEEEcCCChHHHHHHHHhhhcCCCcEEe
Q 006916 81 IMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (625)
Q Consensus 81 ~~~~~~l~~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 120 (625)
.+.+..+...|+.+|+-+-++... .+..+-+.+++|+|.
T Consensus 89 ~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvig 127 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMIS 127 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEc
Confidence 344445556699999987666544 556666778999996
No 176
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=68.76 E-value=16 Score=34.23 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=46.3
Q ss_pred HHHhcCcEEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEE
Q 006916 86 QFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAI 165 (625)
Q Consensus 86 ~l~~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii 165 (625)
.+.+.++.+|+-+-++.++..+..+-+..++|+|... -.++...++..+-++|+++
T Consensus 69 ~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~------------------------epa~~~A~~~~~~~rIgVl 124 (273)
T 2oho_A 69 FLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVV------------------------LPGASAAIKSTTKGQVGVI 124 (273)
T ss_dssp HHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESH------------------------HHHHHHHHHHCSSSEEEEE
T ss_pred HHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEecc------------------------HHHHHHHHHhcCCCeEEEE
Confidence 3445589988876655555556677778899998630 0122222344567888888
Q ss_pred EecCCCCcchHHHHHHHHhcc--ceEEE
Q 006916 166 FNDDDQGRNGVTALGDKLAEI--RCKIS 191 (625)
Q Consensus 166 ~~d~~~g~~~~~~l~~~l~~~--g~~v~ 191 (625)
..... .....+++.+++. |+++.
T Consensus 125 aT~~T---~~~~~y~~~l~~~~~g~~v~ 149 (273)
T 2oho_A 125 GTPMT---VASDIYRKKIQLLAPSIQVR 149 (273)
T ss_dssp ECHHH---HHHTHHHHHHHHHCTTSEEE
T ss_pred ECchh---hcchHHHHHHHHhCCCCEEE
Confidence 76431 1122345555555 66655
No 177
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=67.48 E-value=7.9 Score=36.82 Aligned_cols=65 Identities=8% Similarity=0.080 Sum_probs=45.2
Q ss_pred HHHHHC-CCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccccc------ceEecccccccceEEEEecC
Q 006916 497 AAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRTK------AVDFTQPYIESGLVVVAPVR 569 (625)
Q Consensus 497 ~~~~~l-~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~~R~~------~vdfs~p~~~~~~~~l~~~~ 569 (625)
.+.+.+ |.+ ++++.. +.+..++..|.+|++|+++++.... .|.+ .+.++.|+...+..+++++.
T Consensus 24 ~~~~~~~g~~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~lv~~~~ 94 (308)
T 2x26_A 24 LLEKRYPESK--ISWVEF------PAGPQMLEALNVGSIDLGSTGDIPP-IFAQAAGADLVYVGVEPPKPKAEVILVAEN 94 (308)
T ss_dssp HHHHHCTTSE--EEEEEC------SSHHHHHHHHHHTSCSEEEECSHHH-HHHHHTTCCEEEEEEECCCGGGEEEEEETT
T ss_pred hHhHhcCCCc--eEEEEC------CCcHHHHHHHHCCCCCEEcccCcHH-HHHHhcCCCeEEEEEecCCCCceEEEEeCC
Confidence 356666 766 666664 2358999999999999998655432 2221 45678888777889999865
Q ss_pred C
Q 006916 570 K 570 (625)
Q Consensus 570 ~ 570 (625)
+
T Consensus 95 ~ 95 (308)
T 2x26_A 95 S 95 (308)
T ss_dssp C
T ss_pred C
Confidence 4
No 178
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=66.35 E-value=36 Score=25.02 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=32.3
Q ss_pred CchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEE
Q 006916 141 PNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKIS 191 (625)
Q Consensus 141 ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~ 191 (625)
-.+...++....+++..|-+-..|||+.|. ..++.|....++.|.++-
T Consensus 58 vddkewaekairfvkslgaqvliiiydqdq---nrleefsrevrrrgfevr 105 (134)
T 2l69_A 58 VDDKEWAEKAIRFVKSLGAQVLIIIYDQDQ---NRLEEFSREVRRRGFEVR 105 (134)
T ss_dssp CSSHHHHHHHHHHHHHHCCCCEEEEECSCH---HHHHHHHHHHHHTTCCEE
T ss_pred EccHHHHHHHHHHHHhcCCeEEEEEEeCch---hHHHHHHHHHHhcCceEE
Confidence 345556677777777777777777775442 467777777777777654
No 179
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=65.55 E-value=56 Score=30.48 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=26.3
Q ss_pred HHHHHhcCcEEEEcCCChHHHHHHHHhhhcCCCcEEe
Q 006916 84 ALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (625)
Q Consensus 84 ~~~l~~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 120 (625)
+..+.++++.+|+-+-++.++..+..+-+.+++|+|.
T Consensus 62 ~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVig 98 (276)
T 2dwu_A 62 VEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIG 98 (276)
T ss_dssp HHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEe
Confidence 3344456999998866555555677777788999985
No 180
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=65.25 E-value=71 Score=27.95 Aligned_cols=159 Identities=15% Similarity=0.126 Sum_probs=96.9
Q ss_pred eEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHHH
Q 006916 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (625)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~~ 105 (625)
..+|.++.|.. ....-++-...+.| ..+.+.. .+-..++..+.++ ++++.+||.-. .++.
T Consensus 4 ~~~I~~iapy~-----~l~~~~~~i~~e~~--------~~i~i~~----~~l~~~v~~a~~~-~~~~dVIISRG--gta~ 63 (196)
T 2q5c_A 4 SLKIALISQNE-----NLLNLFPKLALEKN--------FIPITKT----ASLTRASKIAFGL-QDEVDAIISRG--ATSD 63 (196)
T ss_dssp CCEEEEEESCH-----HHHHHHHHHHHHHT--------CEEEEEE----CCHHHHHHHHHHH-TTTCSEEEEEH--HHHH
T ss_pred CCcEEEEEccH-----HHHHHHHHHHhhhC--------CceEEEE----CCHHHHHHHHHHh-cCCCeEEEECC--hHHH
Confidence 35788888864 23333444444432 2444322 3456788888888 88999999632 2333
Q ss_pred HHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhc
Q 006916 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAE 185 (625)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~ 185 (625)
.+. +..++|+|... .+..+..+++...-++ + ++++++...+.. ...+.+.+.+.
T Consensus 64 ~lr---~~~~iPVV~I~------------------~s~~Dil~al~~a~~~-~-~kIavvg~~~~~--~~~~~~~~ll~- 117 (196)
T 2q5c_A 64 YIK---KSVSIPSISIK------------------VTRFDTMRAVYNAKRF-G-NELALIAYKHSI--VDKHEIEAMLG- 117 (196)
T ss_dssp HHH---TTCSSCEEEEC------------------CCHHHHHHHHHHHGGG-C-SEEEEEEESSCS--SCHHHHHHHHT-
T ss_pred HHH---HhCCCCEEEEc------------------CCHhHHHHHHHHHHhh-C-CcEEEEeCcchh--hHHHHHHHHhC-
Confidence 333 34689999742 2234556666665443 3 489998875532 23556666653
Q ss_pred cceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCC
Q 006916 186 IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMM 244 (625)
Q Consensus 186 ~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~ 244 (625)
.++... .+. +.++....++++++.+.++||-... ..+.|.+.||.
T Consensus 118 --~~i~~~-~~~-----~~~e~~~~i~~l~~~G~~vvVG~~~------~~~~A~~~Gl~ 162 (196)
T 2q5c_A 118 --VKIKEF-LFS-----SEDEITTLISKVKTENIKIVVSGKT------VTDEAIKQGLY 162 (196)
T ss_dssp --CEEEEE-EEC-----SGGGHHHHHHHHHHTTCCEEEECHH------HHHHHHHTTCE
T ss_pred --CceEEE-EeC-----CHHHHHHHHHHHHHCCCeEEECCHH------HHHHHHHcCCc
Confidence 454432 222 3668889999999999999875432 35567888864
No 181
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=64.92 E-value=35 Score=31.83 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=28.3
Q ss_pred HHHHHHHHh-cCcEEEEcCCChHHHHHHHHhhhcCCCcEEe
Q 006916 81 IMGALQFME-TDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (625)
Q Consensus 81 ~~~~~~l~~-~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 120 (625)
.+.+..+.+ .++.+|+-+-++.++..+..+-+.+++|+|.
T Consensus 55 ~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVig 95 (272)
T 1zuw_A 55 WELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVG 95 (272)
T ss_dssp HHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEc
Confidence 334445566 7999888766666555667777788999996
No 182
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=64.88 E-value=33 Score=32.28 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=25.2
Q ss_pred HHHHhcCcEEEEcCCChHHHHHHHHhhhcCCCcEEe
Q 006916 85 LQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (625)
Q Consensus 85 ~~l~~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 120 (625)
..+.+.++.+|+-+-++..+..+..+-+..++|+|.
T Consensus 78 ~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVig 113 (286)
T 2jfq_A 78 RKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIG 113 (286)
T ss_dssp HHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEE
T ss_pred HHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEe
Confidence 334455899888766555544566777778999996
No 183
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=64.73 E-value=23 Score=33.59 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=55.8
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh-hHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~-~~~~il~ 236 (625)
+.|+++..+ +.|.....+.+++.+++.|..+..... . .+...-...++.+...+.+.||+..... .....++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-N----GNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVK 77 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 578888864 567778889999999999988775432 1 2344556677788778899888875543 3356777
Q ss_pred HHHHcCC
Q 006916 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~g~ 243 (625)
++.+.|+
T Consensus 78 ~~~~~~i 84 (313)
T 3m9w_A 78 EAKQEGI 84 (313)
T ss_dssp HHHTTTC
T ss_pred HHHHCCC
Confidence 7776664
No 184
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=63.10 E-value=27 Score=32.52 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=36.6
Q ss_pred CCCcEEEEEEecCCC------ChHH----HHHHHHHHHhcCcEEEEcCCChHHHHHHHHhhhcCCCcEEe
Q 006916 61 LGGRKLSITMHDAKF------NGFL----SIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (625)
Q Consensus 61 L~g~~l~~~~~D~~~------~~~~----a~~~~~~l~~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 120 (625)
||+..+-| +-|+.. +... +.+.+..|.+.++.+|+=+-++.++.++..+-+.+.+|+|.
T Consensus 28 lP~~~~iy-~~D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 28 LPHEQVYY-LGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp CTTCCEEE-EECGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCcEEE-EeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 57777765 345432 2222 22233344556999998866666655677777888999996
No 185
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=61.59 E-value=1.1e+02 Score=28.94 Aligned_cols=133 Identities=15% Similarity=0.189 Sum_probs=76.5
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHHHH
Q 006916 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (625)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~~~ 106 (625)
-.|+.+|...+ .+.+.+|+.|+.++ +|..+.+...++.-.-.+.+.-+.+.++.-+.+|+-=... ...
T Consensus 37 k~la~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~--~~~ 104 (307)
T 3tpf_A 37 KTLAMIFEKNS---TRTRMAFELAITEL-------GGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNK--HET 104 (307)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHHHSSEEEEECSC--HHH
T ss_pred CEEEEEecCCC---cchHHhHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC--hHH
Confidence 45888888765 47889999999985 4555555433333222233333334444323444321111 234
Q ss_pred HHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcC-Cc---EEEEEEecCCCCcchHHHH
Q 006916 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG-WG---EVIAIFNDDDQGRNGVTAL 179 (625)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~-W~---~v~ii~~d~~~g~~~~~~l 179 (625)
+..+++..++|+|.-+. + ...| .+++++++ +++| ++ +|+++.+ +......+
T Consensus 105 ~~~lA~~~~vPVINag~-~-----~~HP------------tQaLaDl~Ti~e~~g~l~~gl~va~vGD----~~~va~Sl 162 (307)
T 3tpf_A 105 LLEFARYSKAPVINALS-E-----LYHP------------TQVLGDLFTIKEWNKMQNGIAKVAFIGD----SNNMCNSW 162 (307)
T ss_dssp HHHHHHHCSSCEEEEEC-S-----SCCH------------HHHHHHHHHHHHTTCCGGGCCEEEEESC----SSHHHHHH
T ss_pred HHHHHHhCCCCEEeCCC-C-----CcCc------------HHHHHHHHHHHHHhCCCCCCCEEEEEcC----CCccHHHH
Confidence 45666777899997432 1 1122 35667663 4555 44 6776652 34577888
Q ss_pred HHHHhccceEEEEe
Q 006916 180 GDKLAEIRCKISYK 193 (625)
Q Consensus 180 ~~~l~~~g~~v~~~ 193 (625)
...+...|.++...
T Consensus 163 ~~~~~~~G~~v~~~ 176 (307)
T 3tpf_A 163 LITAAILGFEISIA 176 (307)
T ss_dssp HHHHHHHTCEEEEE
T ss_pred HHHHHHcCCEEEEE
Confidence 88888889887653
No 186
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=60.98 E-value=44 Score=31.63 Aligned_cols=135 Identities=12% Similarity=0.137 Sum_probs=78.0
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC-CChHHH
Q 006916 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP-QSAVMA 104 (625)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~-~v~aviG~-~~s~~~ 104 (625)
-.|+.+|...+ .+.+.+|+.|+.++ +|..+.+...++.-.-.+.+.-+.+.++. ++.+|+-= .....
T Consensus 37 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~~~- 105 (304)
T 3r7f_A 37 KFAANLFFEPS---TRTRFSFEVAEKKL-------GMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDEY- 105 (304)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSSTTC-
T ss_pred CEEEEEecCCC---hhHHHhHHHHHHHC-------CCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCChhH-
Confidence 45888888765 37889999999985 46666664444433223334444445554 45555531 22233
Q ss_pred HHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcC---CcEEEEEEecCCCCcchHHH
Q 006916 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTA 178 (625)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~---W~~v~ii~~d~~~g~~~~~~ 178 (625)
+..+++..++|+|.-+.++ ...| .+++++++ +++| -.+|+++. |-.+ ......
T Consensus 106 --~~~la~~~~vPVINagdg~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vG-D~~~-~rva~S 164 (304)
T 3r7f_A 106 --YEELVSQVNIPILNAGDGC-----GQHP------------TQSLLDLMTIYEEFNTFKGLTVSIHG-DIKH-SRVARS 164 (304)
T ss_dssp --HHHHHHHCSSCEEESCCTT-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES-CCTT-CHHHHH
T ss_pred --HHHHHHhCCCCEEeCCCCC-----CcCc------------HHHHHHHHHHHHHhCCCCCCEEEEEc-CCCC-cchHHH
Confidence 3344566789999732211 1222 35666663 4554 45777765 3222 246777
Q ss_pred HHHHHhccceEEEEe
Q 006916 179 LGDKLAEIRCKISYK 193 (625)
Q Consensus 179 l~~~l~~~g~~v~~~ 193 (625)
+...+...|.++...
T Consensus 165 l~~~~~~~G~~v~~~ 179 (304)
T 3r7f_A 165 NAEVLTRLGARVLFS 179 (304)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 778888888877653
No 187
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=59.95 E-value=43 Score=30.79 Aligned_cols=117 Identities=16% Similarity=0.071 Sum_probs=63.9
Q ss_pred HHHHHHhcCcEEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEE
Q 006916 83 GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEV 162 (625)
Q Consensus 83 ~~~~l~~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v 162 (625)
.+..+.+.|+.+|+-+-++..+..+..+-+..++|+|... -.++...++..+-++|
T Consensus 54 ~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~------------------------e~~~~~A~~~~~~~ri 109 (254)
T 1b73_A 54 CAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVI------------------------EPGVKEALKKSRNKKI 109 (254)
T ss_dssp HHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESH------------------------HHHHHHHHHHCSSCEE
T ss_pred HHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeee------------------------HHHHHHHHHccCCCEE
Confidence 3344455699988876555543446666677899998630 1122222344567899
Q ss_pred EEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCC-CCC-----C----hhHHHHHHHHHhcCCceEEEEEcch
Q 006916 163 IAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPD-QSV-----T----ETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 163 ~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-~~~-----~----~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
+++...... .....++.++..|+++.... .+.- ... + ...+.+.++++.+. +++||+.|..
T Consensus 110 gVlaT~~T~---~~~~y~~~l~~~g~~v~~~~-~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~ 180 (254)
T 1b73_A 110 GVIGTPATV---KSGAYQRKLEEGGADVFAKA-CPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTH 180 (254)
T ss_dssp EEEECHHHH---HHCHHHHHHHTTSCEEEEEE-CCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCC
T ss_pred EEEEChHHh---hhHHHHHHHHcCCCEEEecC-CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccC
Confidence 999865431 11234556666787764221 1110 000 1 12333444444445 8999997765
No 188
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=59.85 E-value=1.2e+02 Score=28.96 Aligned_cols=135 Identities=15% Similarity=0.096 Sum_probs=78.3
Q ss_pred eEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHHH
Q 006916 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (625)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~~ 105 (625)
.-.|+.+|-..+ .+.+.+|+.|+.++ +|..+.+...+++-.-.+.+.-+.+.++.-+.+|+==... ..
T Consensus 44 gk~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~--~~ 111 (333)
T 1duv_G 44 GKNIALIFEKDS---TRTRCSFEVAAYDQ-------GARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYG--QE 111 (333)
T ss_dssp TCEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSC--HH
T ss_pred CCEEEEEecCCC---ccHHHHHHHHHHHc-------CCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcCC--ch
Confidence 346888888765 37899999999995 4555555333333222334455555666544444421111 23
Q ss_pred HHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HH-cC--C--cEEEEEEecCCCCcchHH
Q 006916 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SY-FG--W--GEVIAIFNDDDQGRNGVT 177 (625)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~-~~--W--~~v~ii~~d~~~g~~~~~ 177 (625)
.+..+++..++|+|.- .+ +...| .+++++++ ++ +| . .+|+++.+ .. .....
T Consensus 112 ~~~~lA~~~~vPVINa-~~-----~~~HP------------tQ~LaDl~Ti~e~~~g~~l~gl~ia~vGD--~~-~~va~ 170 (333)
T 1duv_G 112 IVETLAEYASVPVWNG-LT-----NEFHP------------TQLLADLLTMQEHLPGKAFNEMTLVYAGD--AR-NNMGN 170 (333)
T ss_dssp HHHHHHHHHSSCEEES-CC-----SSCCH------------HHHHHHHHHHHHHSTTCCGGGCEEEEESC--TT-SHHHH
T ss_pred HHHHHHHhCCCCeEcC-CC-----CCCCc------------hHHHHHHHHHHHHhcCCCCCCcEEEEECC--Cc-cchHH
Confidence 3344555668999972 22 22223 25666663 56 66 2 46666543 22 25677
Q ss_pred HHHHHHhccceEEEEe
Q 006916 178 ALGDKLAEIRCKISYK 193 (625)
Q Consensus 178 ~l~~~l~~~g~~v~~~ 193 (625)
.+...+...|.++...
T Consensus 171 Sl~~~~~~~G~~v~~~ 186 (333)
T 1duv_G 171 SMLEAAALTGLDLRLV 186 (333)
T ss_dssp HHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 8888888888887653
No 189
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=59.75 E-value=21 Score=34.91 Aligned_cols=96 Identities=7% Similarity=0.037 Sum_probs=61.4
Q ss_pred HHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-
Q 006916 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS- 228 (625)
Q Consensus 150 l~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~- 228 (625)
+.++++.++.+++.+|++...+. ...+.+.+.+++.|+++......+ . .+.+.+... +.+++.+.++||-.+.+
T Consensus 25 l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~~-~--~~~~~v~~~-~~~~~~~~d~IIavGGGs 99 (354)
T 3ce9_A 25 IGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETVK-N--IDFDEIGTN-AFKIPAEVDALIGIGGGK 99 (354)
T ss_dssp HHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEEC-C--CBHHHHHHH-HTTSCTTCCEEEEEESHH
T ss_pred HHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecCC-C--CCHHHHHHH-HHhhhcCCCEEEEECChH
Confidence 56777888889999888654332 456788888888888765332233 2 346677777 77788888999876654
Q ss_pred -hhHHHHHHHHHHcCCCCCCeEEEeeCc
Q 006916 229 -RTGLMVFDVAQRLGMMDSGYVWIATTW 255 (625)
Q Consensus 229 -~~~~~il~~a~~~g~~~~~~~~i~~~~ 255 (625)
-++..++... .+ ..++-|-+..
T Consensus 100 v~D~aK~vA~~--~~---~p~i~IPTT~ 122 (354)
T 3ce9_A 100 AIDAVKYMAFL--RK---LPFISVPTST 122 (354)
T ss_dssp HHHHHHHHHHH--HT---CCEEEEESCC
T ss_pred HHHHHHHHHhh--cC---CCEEEecCcc
Confidence 3455554422 23 3455555543
No 190
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=58.82 E-value=53 Score=32.73 Aligned_cols=91 Identities=11% Similarity=0.038 Sum_probs=58.2
Q ss_pred cEEEEEEecCCCCc--chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch------hhH
Q 006916 160 GEVIAIFNDDDQGR--NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS------RTG 231 (625)
Q Consensus 160 ~~v~ii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~------~~~ 231 (625)
++|.|+| .+.||. ..++.+.+.+.+.|+++......... .++...++..+. +++.|++.+++ ..+
T Consensus 266 ~~v~I~Y-~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~----~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~~ 338 (410)
T 4dik_A 266 GKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE----RPAISEILKDIP--DSEALIFGVSTYEAEIHPLM 338 (410)
T ss_dssp TEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC----CCCHHHHHHHST--TCSEEEEEECCTTSSSCHHH
T ss_pred cceeeEE-ecccChHHHHHHHHHHHHHhcCCceEEEEeccCC----CCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHHH
Confidence 4798888 456664 45788888899999887654434332 445666777765 45677776554 355
Q ss_pred HHHHHHHHHcCCCCCCeEEEeeCcch
Q 006916 232 LMVFDVAQRLGMMDSGYVWIATTWLS 257 (625)
Q Consensus 232 ~~il~~a~~~g~~~~~~~~i~~~~~~ 257 (625)
..++.........++.-..+.+-.|.
T Consensus 339 ~~~l~~l~~~~~~~K~~~~FGSyGWs 364 (410)
T 4dik_A 339 RFTLLEIIDKANYEKPVLVFGVHGWA 364 (410)
T ss_dssp HHHHHHHHHHCCCCCEEEEEEECCCC
T ss_pred HHHHHHHHhcccCCCEEEEEECCCCC
Confidence 66777776666545444455555554
No 191
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=58.64 E-value=18 Score=35.54 Aligned_cols=82 Identities=12% Similarity=0.083 Sum_probs=56.0
Q ss_pred HHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-
Q 006916 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS- 228 (625)
Q Consensus 150 l~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~- 228 (625)
+.++++.+| +++.+|++..... ...+.+.+.+++.|+.+.+ ..+... ...+.+....+.+++.++++||-.+.+
T Consensus 23 l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge--~~~~~v~~~~~~~~~~~~d~IIavGGGs 97 (370)
T 1jq5_A 23 IANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGE--ASRNEVERIANIARKAEAAIVIGVGGGK 97 (370)
T ss_dssp HHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSS--CBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCC--CCHHHHHHHHHHHHhcCCCEEEEeCChH
Confidence 566777778 9998888544322 3578888889888888753 233333 345677788888888889999976654
Q ss_pred -hhHHHHHH
Q 006916 229 -RTGLMVFD 236 (625)
Q Consensus 229 -~~~~~il~ 236 (625)
-++..++.
T Consensus 98 v~D~aK~iA 106 (370)
T 1jq5_A 98 TLDTAKAVA 106 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 34555554
No 192
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=58.55 E-value=33 Score=32.34 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=27.0
Q ss_pred HHHHHHhcCcEEEEcCCChHHHHHHHHhhhcCCCcEEe
Q 006916 83 GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (625)
Q Consensus 83 ~~~~l~~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 120 (625)
.+..+..+++.+|+-+-++..+..+..+-+..++|+|.
T Consensus 78 ~~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVig 115 (290)
T 2vvt_A 78 MADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVG 115 (290)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEc
Confidence 33344556999998766666555677777788999996
No 193
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=58.35 E-value=22 Score=33.48 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=53.8
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~ 236 (625)
++|++|..+ +.|.....+.+++.+++.|..+.... ... .+.......++.+...+.+.||+.... ......++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG--AAQ--YDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE--CSS--SCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC--CCc--CCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHH
Confidence 567888764 45666778888889999998886522 111 234555667777777788988876543 33456777
Q ss_pred HHHHcCC
Q 006916 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~g~ 243 (625)
++.+.|+
T Consensus 81 ~~~~~~i 87 (305)
T 3g1w_A 81 KAVDAGI 87 (305)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8877664
No 194
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=58.10 E-value=1.3e+02 Score=28.98 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=73.1
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHHHH
Q 006916 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (625)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~~~ 106 (625)
-.|+.+|...+ .+.+.+|+.|+.++ +|..+.+...++.-.-.+.+.-+.+.++.-+.+|+-=.. ....
T Consensus 71 K~la~lF~epS---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~y~D~IviR~~--~~~~ 138 (340)
T 4ep1_A 71 KILGLIFDKHS---TRTRVSFEAGMVQL-------GGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTF--SHAD 138 (340)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEEESCC------CCTTHHHHHHHHHCSEEEEECS--CHHH
T ss_pred ceEEEEecCCC---ccHHHHHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecC--ChhH
Confidence 46888887765 47789999999985 455555433333221122222233333332333332111 2234
Q ss_pred HHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcC---CcEEEEEEecCCCCcchHHHHH
Q 006916 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTALG 180 (625)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~---W~~v~ii~~d~~~g~~~~~~l~ 180 (625)
+..+++..++|+|.-+ ++ ...| .+++++++ +++| -.+|+++.+ . ......+.
T Consensus 139 ~~~lA~~~~vPVINag-~~-----~~HP------------tQaLaDl~TI~E~~G~l~glkva~vGD--~--~nva~Sl~ 196 (340)
T 4ep1_A 139 VEELAKESSIPVINGL-TD-----DHHP------------CQALADLMTIYEETNTFKGIKLAYVGD--G--NNVCHSLL 196 (340)
T ss_dssp HHHHHHHCSSCEEEEE-CS-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC--C--CHHHHHHH
T ss_pred HHHHHHhCCCCEEeCC-CC-----CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEECC--C--chhHHHHH
Confidence 4566677789999743 22 1122 35666663 4555 467877752 2 34677788
Q ss_pred HHHhccceEEEEe
Q 006916 181 DKLAEIRCKISYK 193 (625)
Q Consensus 181 ~~l~~~g~~v~~~ 193 (625)
..+...|.++...
T Consensus 197 ~~~~~~G~~v~~~ 209 (340)
T 4ep1_A 197 LASAKVGMHMTVA 209 (340)
T ss_dssp HHHHHHTCEEEEE
T ss_pred HHHHHcCCEEEEE
Confidence 8888888887653
No 195
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=57.96 E-value=20 Score=35.07 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 006916 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (625)
Q Consensus 148 ~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 227 (625)
..+.++++.+|.+++.||++.... ...+.+.+.+++.++.+ +. .+.+. .+.+.+.+.++.+++.++++||-.+.
T Consensus 23 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~~-~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 96 (353)
T 3hl0_A 23 ADVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-FS-EAAMH--TPVEVTKTAVEAYRAAGADCVVSLGG 96 (353)
T ss_dssp GGHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-EC-CCCTT--CBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-ec-CcCCC--CcHHHHHHHHHHHhccCCCEEEEeCC
Confidence 346778888999999888865433 35678888888766543 22 22222 34667888888888889999888766
Q ss_pred hh--hHHHHH
Q 006916 228 SR--TGLMVF 235 (625)
Q Consensus 228 ~~--~~~~il 235 (625)
+. ++..++
T Consensus 97 Gs~iD~aK~i 106 (353)
T 3hl0_A 97 GSTTGLGKAI 106 (353)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 63 344444
No 196
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=57.31 E-value=26 Score=30.84 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=53.0
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+||+... -...+-.+++..+.+... .+++++.. +....++..|.+|++|+++..
T Consensus 4 ~g~lrIg~~~~--------------~~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 61 (219)
T 1i6a_A 4 SGPLHIGLIPT--------------VGPYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILA 61 (219)
T ss_dssp CEEEEEEECTT--------------THHHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEE
T ss_pred ceEEEEEeccc--------------hhhhhhhHHHHHHHHHCC-CeEEEEEE-------CChHHHHHHHHcCCeeEEEec
Confidence 36789998421 112455678888888774 34477766 558999999999999999864
Q ss_pred eeeecccccceEecccccccceEEEEec
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPV 568 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~ 568 (625)
... ....+.+ .|+....+.++++.
T Consensus 62 ~~~---~~~~l~~-~~l~~~~~~~v~~~ 85 (219)
T 1i6a_A 62 LVK---ESEAFIE-VPLFDEPMLLAIYE 85 (219)
T ss_dssp CCG---GGTTSEE-EEEEEEEEEEEEET
T ss_pred CCC---CCCCcce-eeeecccEEEEEcC
Confidence 321 1222333 35666666666654
No 197
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=56.70 E-value=60 Score=30.41 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=24.7
Q ss_pred HHh-cCcEEEEcCCChHHHHHHHHhhhcCCCcEEe
Q 006916 87 FME-TDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (625)
Q Consensus 87 l~~-~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 120 (625)
++. .++.+|+-+-++.++..+..+-+..++|+|.
T Consensus 79 ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVig 113 (285)
T 2jfn_A 79 VQERYPLALAVVACNTASTVSLPALREKFDFPVVG 113 (285)
T ss_dssp HHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEC
T ss_pred HHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEe
Confidence 444 5898888766555555667777788999996
No 198
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=56.46 E-value=49 Score=28.15 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=48.4
Q ss_pred cCCcEEEEEEecCCCCc---chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcch
Q 006916 157 FGWGEVIAIFNDDDQGR---NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYS 228 (625)
Q Consensus 157 ~~W~~v~ii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~~ 228 (625)
|.--+++||...|+-|+ .....+.+.+++.|.++.....++.+ .+.+...+++..+ .++|+||..+..
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD----KESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS----HHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 34457888887665443 34567888889999998877777744 7778888887765 368999887544
No 199
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=55.69 E-value=37 Score=31.71 Aligned_cols=84 Identities=7% Similarity=-0.057 Sum_probs=55.6
Q ss_pred CCcEEEEEEec---CCCCcchHHHHHHHHhcc-ceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh-hHH
Q 006916 158 GWGEVIAIFND---DDQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGL 232 (625)
Q Consensus 158 ~W~~v~ii~~d---~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~-~~~ 232 (625)
.=..|+++..+ +.|.....+.+++.+++. |..+......... .+.......++.+...+.+.||+..... ...
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 84 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDP--YDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK 84 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECS--SCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEECCCChHHHH
Confidence 34678888765 345567778888888888 7766654332211 2355556778888888899888876543 456
Q ss_pred HHHHHHHHcCC
Q 006916 233 MVFDVAQRLGM 243 (625)
Q Consensus 233 ~il~~a~~~g~ 243 (625)
..++.+.+.++
T Consensus 85 ~~~~~~~~~~i 95 (304)
T 3gbv_A 85 GFTDALNELGI 95 (304)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHCCC
Confidence 67777777664
No 200
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=55.29 E-value=82 Score=28.27 Aligned_cols=135 Identities=16% Similarity=0.233 Sum_probs=81.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchH
Q 006916 66 LSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDL 144 (625)
Q Consensus 66 l~~~~~D~~~~~~~a~~~~~~l~~~-~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~ 144 (625)
..+.+.+. +-..++..+.+++.. ++.+||.-. .++..+. +..++|+|... .+..
T Consensus 39 ~~I~vi~~--~le~av~~a~~~~~~~~~dVIISRG--gta~~Lr---~~~~iPVV~I~------------------vs~~ 93 (225)
T 2pju_A 39 ANITPIQL--GFEKAVTYIRKKLANERCDAIIAAG--SNGAYLK---SRLSVPVILIK------------------PSGY 93 (225)
T ss_dssp CEEEEECC--CHHHHHHHHHHHTTTSCCSEEEEEH--HHHHHHH---TTCSSCEEEEC------------------CCHH
T ss_pred ceEEEecC--cHHHHHHHHHHHHhcCCCeEEEeCC--hHHHHHH---hhCCCCEEEec------------------CCHH
Confidence 33444443 356678888887765 699999632 2333333 44689999742 2234
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEE
Q 006916 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV 224 (625)
Q Consensus 145 ~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl 224 (625)
+..+++...-+ ++ ++++++...+.. ...+.+.+.+ |.++... .+ .+.++....++++++.+.++||-
T Consensus 94 Dil~aL~~a~~-~~-~kIavVg~~~~~--~~~~~i~~ll---~~~i~~~-~~-----~~~ee~~~~i~~l~~~G~~vVVG 160 (225)
T 2pju_A 94 DVLQFLAKAGK-LT-SSIGVVTYQETI--PALVAFQKTF---NLRLDQR-SY-----ITEEDARGQINELKANGTEAVVG 160 (225)
T ss_dssp HHHHHHHHTTC-TT-SCEEEEEESSCC--HHHHHHHHHH---TCCEEEE-EE-----SSHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHh-hC-CcEEEEeCchhh--hHHHHHHHHh---CCceEEE-Ee-----CCHHHHHHHHHHHHHCCCCEEEC
Confidence 44555555533 33 589988865532 2345555554 4444432 22 23678999999999999998775
Q ss_pred EcchhhHHHHHHHHHHcCCC
Q 006916 225 HGYSRTGLMVFDVAQRLGMM 244 (625)
Q Consensus 225 ~~~~~~~~~il~~a~~~g~~ 244 (625)
... ..+.|.+.||.
T Consensus 161 ~~~------~~~~A~~~Gl~ 174 (225)
T 2pju_A 161 AGL------ITDLAEEAGMT 174 (225)
T ss_dssp SHH------HHHHHHHTTSE
T ss_pred CHH------HHHHHHHcCCc
Confidence 332 35567788864
No 201
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=55.21 E-value=27 Score=32.48 Aligned_cols=79 Identities=6% Similarity=-0.067 Sum_probs=54.6
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~ 236 (625)
+.|+++..+ +.|.....+.+.+.+++.|..+..... . .+.......++.+...+.+.||+.... ......++
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA---G--RNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQ 80 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 578888874 345556778899999999988775421 1 234455667777777788988876543 45667778
Q ss_pred HHHHcCC
Q 006916 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~g~ 243 (625)
.+.+.|+
T Consensus 81 ~~~~~~i 87 (291)
T 3l49_A 81 KINDAGI 87 (291)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8877664
No 202
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=55.14 E-value=17 Score=35.61 Aligned_cols=96 Identities=20% Similarity=0.201 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 006916 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (625)
Q Consensus 148 ~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 227 (625)
..+.++++.+|.+++.||++.... ...+.+.+.+++.++.+ +.. +.+. ...+...+.++.+++.++++||-.+.
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~~-f~~-v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 98 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQ--AEAERIADLLGPLSAGV-YAG-AVMH--VPIESARDATARAREAGADCAVAVGG 98 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGH--HHHHHHHHHHGGGEEEE-ECC-CCTT--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHHhccCCEEE-ecC-CcCC--CCHHHHHHHHHHhhccCCCEEEEeCC
Confidence 346778889999999988865443 34677888888765432 222 2222 34667778888888888998888766
Q ss_pred hh--hHHHHHHHHHHcCCCCCCeEEEeeC
Q 006916 228 SR--TGLMVFDVAQRLGMMDSGYVWIATT 254 (625)
Q Consensus 228 ~~--~~~~il~~a~~~g~~~~~~~~i~~~ 254 (625)
+. ++..++.. ..+ ..++-|-+.
T Consensus 99 GsviD~aK~iA~--~~~---~p~i~IPTT 122 (358)
T 3jzd_A 99 GSTTGLGKAIAL--ETG---MPIVAIPTT 122 (358)
T ss_dssp HHHHHHHHHHHH--HHC---CCEEEEECS
T ss_pred cHHHHHHHHHHh--ccC---CCEEEEeCC
Confidence 63 44444433 223 345555554
No 203
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=54.77 E-value=29 Score=32.06 Aligned_cols=78 Identities=8% Similarity=-0.043 Sum_probs=54.2
Q ss_pred CcEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHH
Q 006916 159 WGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 236 (625)
Q Consensus 159 W~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~ 236 (625)
-+.|+++..+ +.|.....+.+.+.+++.|..+.... .. .+...-...++.+...+.+.||+..... ...++
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~ 79 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFD-AN----ADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQ 79 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEE-CT----TCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEe-CC----CCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHH
Confidence 3578888864 34566778888899999998877532 11 2244456677888888899888876655 56677
Q ss_pred HHHHcCC
Q 006916 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~g~ 243 (625)
.+.+.++
T Consensus 80 ~l~~~~i 86 (276)
T 3jy6_A 80 EILHQQM 86 (276)
T ss_dssp HHHTTSS
T ss_pred HHHHCCC
Confidence 7776654
No 204
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=54.54 E-value=28 Score=33.18 Aligned_cols=65 Identities=9% Similarity=0.116 Sum_probs=41.2
Q ss_pred HHHHC-CCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeee-----ecccccceEecccccccceEEEEecCC
Q 006916 498 AVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAI-----VTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 498 ~~~~l-~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~-----t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
+.+.+ |.+ ++++.+ +++..++..|..|++|+++.+.+. ...+.-.+.++.++...+..+++++.+
T Consensus 51 ~~~~~~g~~--v~~~~~------~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~lvv~~~s 121 (324)
T 3ksx_A 51 LEQRFPRTK--ITWVEF------PAGPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVGWVPPTPKAETILVPSKS 121 (324)
T ss_dssp HHHHCTTSE--EEEEEE------SSHHHHHHHHHTTSCSEEEEESHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTC
T ss_pred HHHhcCCCc--eEEEEC------CCHHHHHHHHHCCCCCEEeecCHHHHHHHhcCCCEEEEEEecCCCCceEEEEeCCC
Confidence 45555 666 666664 348899999999999998765421 122222333344445567888887754
No 205
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=54.14 E-value=8.6 Score=35.01 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=44.4
Q ss_pred HHHHhcCcEEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEE
Q 006916 85 LQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIA 164 (625)
Q Consensus 85 ~~l~~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~i 164 (625)
..|...|+.+|+-+-++... .+..+-+..++|+|+. .++.++-+...+-++|++
T Consensus 70 ~~L~~~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~rVgv 123 (231)
T 3ojc_A 70 ISLKHAGAEVIVVCTNTMHK-VADDIEAACGLPLLHI-------------------------ADATAVQIKQQGIDKIGL 123 (231)
T ss_dssp HHHHHHTCCEEEECSSGGGG-GHHHHHHHHCSCBCCH-------------------------HHHHHHHHHHTTCCEEEE
T ss_pred HHHHhcCCCEEEEeCCchHH-HHHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCEEEE
Confidence 34445599888876655433 2345555678888752 244444444567789999
Q ss_pred EEecCCCCcchHHHHHHHHhcc-ceEEE
Q 006916 165 IFNDDDQGRNGVTALGDKLAEI-RCKIS 191 (625)
Q Consensus 165 i~~d~~~g~~~~~~l~~~l~~~-g~~v~ 191 (625)
+......- ...+++.+++. |+++.
T Consensus 124 LaT~~T~~---s~~y~~~l~~~~g~~v~ 148 (231)
T 3ojc_A 124 LGTRYTME---QGFYRGRLTEKHGIEVI 148 (231)
T ss_dssp ESCHHHHH---STTTHHHHHHTTCCEEE
T ss_pred EcCHHHhh---chHHHHHHHhcCCCEEE
Confidence 97643110 11234445555 77664
No 206
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=53.98 E-value=68 Score=29.25 Aligned_cols=94 Identities=9% Similarity=0.017 Sum_probs=66.4
Q ss_pred HHHHHHHHHHcCCcEEEEEEec------------CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHH
Q 006916 147 MSAIAEMVSYFGWGEVIAIFND------------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV 214 (625)
Q Consensus 147 ~~al~~ll~~~~W~~v~ii~~d------------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i 214 (625)
....++.++..|.+.|=+...+ ........+.+++.+++.|+.+........ .....+...++..
T Consensus 24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A 100 (262)
T 3p6l_A 24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA---EKSSDWEKMFKFA 100 (262)
T ss_dssp HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC---SSTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC---ccHHHHHHHHHHH
Confidence 3556777888999988765422 112234578999999999998876543322 2356788888888
Q ss_pred hcCCceEEEEEcchhhHHHHHHHHHHcCC
Q 006916 215 RMMEARVIVVHGYSRTGLMVFDVAQRLGM 243 (625)
Q Consensus 215 ~~~~~~vIvl~~~~~~~~~il~~a~~~g~ 243 (625)
+.-+++.|++....+....+.+.|.+.|+
T Consensus 101 ~~lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 101 KAMDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp HHTTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred HHcCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 88899988887666667777777777664
No 207
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=53.44 E-value=1.6e+02 Score=28.12 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=76.7
Q ss_pred eEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChHHH
Q 006916 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMA 104 (625)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG-~~~s~~~ 104 (625)
.-.++.+|-..+ .+.+.+|+.|+.++ +|..+.+...++.-.-.+.+.-+.+.++.-+.+|+- ....
T Consensus 46 gk~l~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~--- 112 (321)
T 1oth_A 46 GKSLGMIFEKRS---TRTRLSTETGFALL-------GGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQ--- 112 (321)
T ss_dssp TCEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEETTTSCBTTTBCHHHHHHHHHHHCSEEEEECSCH---
T ss_pred CCEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCCcCcCCCCCCHHHHHHHHHHhCCEEEEeCCCh---
Confidence 356888887765 37899999999995 466666544443322222333333444432333332 1222
Q ss_pred HHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcC---CcEEEEEEecCCCCcchHHH
Q 006916 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTA 178 (625)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~---W~~v~ii~~d~~~g~~~~~~ 178 (625)
..+..+++..++|+|.- .+ +...| .+++++++ +++| -.+|+++.+ +......
T Consensus 113 ~~~~~lA~~~~vPVINa-~~-----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD----~~~va~S 170 (321)
T 1oth_A 113 SDLDTLAKEASIPIING-LS-----DLYHP------------IQILADYLTLQEHYSSLKGLTLSWIGD----GNNILHS 170 (321)
T ss_dssp HHHHHHHHHCSSCEEES-CC-----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC----SSHHHHH
T ss_pred hHHHHHHHhCCCCEEcC-CC-----CCCCc------------HHHHHHHHHHHHHhCCcCCcEEEEECC----chhhHHH
Confidence 33345566778999973 22 22223 35666664 4555 247776653 2356777
Q ss_pred HHHHHhccceEEEEe
Q 006916 179 LGDKLAEIRCKISYK 193 (625)
Q Consensus 179 l~~~l~~~g~~v~~~ 193 (625)
+...+...|.++...
T Consensus 171 l~~~~~~~G~~v~~~ 185 (321)
T 1oth_A 171 IMMSAAKFGMHLQAA 185 (321)
T ss_dssp HHTTTGGGTCEEEEE
T ss_pred HHHHHHHcCCeEEEE
Confidence 778888889887653
No 208
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=53.32 E-value=55 Score=28.18 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=47.3
Q ss_pred cCCcEEEEEEecCC------C-C---cchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC-CceEEEEE
Q 006916 157 FGWGEVIAIFNDDD------Q-G---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVH 225 (625)
Q Consensus 157 ~~W~~v~ii~~d~~------~-g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~vIvl~ 225 (625)
+.--+|+||...|+ . | ......+...+++.|.++.....++.+ .+.+...+++..+. ++|+||+.
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEEC
Confidence 44457888876542 1 2 245677888999999998877777644 77788888776654 58999887
Q ss_pred cc
Q 006916 226 GY 227 (625)
Q Consensus 226 ~~ 227 (625)
+.
T Consensus 89 GG 90 (178)
T 2pjk_A 89 GG 90 (178)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 209
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=52.91 E-value=66 Score=23.67 Aligned_cols=100 Identities=14% Similarity=0.114 Sum_probs=58.1
Q ss_pred CCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHH
Q 006916 133 YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELV 212 (625)
Q Consensus 133 ~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~ 212 (625)
..+-.|+.-+...+-+.+-++++.|+-+-+.++.+|.+| .+......+..|..+.... +.. +...+.+.-+
T Consensus 25 ngfkvrtvrspqelkdsieelvkkynativvvvvddkew----aekairfvkslgaqvliii-ydq----dqnrleefsr 95 (134)
T 2l69_A 25 NGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEW----AEKAIRFVKSLGAQVLIII-YDQ----DQNRLEEFSR 95 (134)
T ss_dssp TTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHH----HHHHHHHHHHHCCCCEEEE-ECS----CHHHHHHHHH
T ss_pred cCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHH----HHHHHHHHHhcCCeEEEEE-EeC----chhHHHHHHH
Confidence 345588888888889999999999998888777655443 3333333344454443322 332 2445555556
Q ss_pred HHhcCCceEEEEEcchhhHHHHHH-HHHHcC
Q 006916 213 KVRMMEARVIVVHGYSRTGLMVFD-VAQRLG 242 (625)
Q Consensus 213 ~i~~~~~~vIvl~~~~~~~~~il~-~a~~~g 242 (625)
+.+..+-.+--+ .++++...-+. -.++.|
T Consensus 96 evrrrgfevrtv-tspddfkkslerlirevg 125 (134)
T 2l69_A 96 EVRRRGFEVRTV-TSPDDFKKSLERLIREVG 125 (134)
T ss_dssp HHHHTTCCEEEE-SSHHHHHHHHHHHHHHHC
T ss_pred HHHhcCceEEEe-cChHHHHHHHHHHHHHhc
Confidence 666665544333 45555444443 334445
No 210
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=52.25 E-value=1.6e+02 Score=28.00 Aligned_cols=133 Identities=14% Similarity=0.190 Sum_probs=75.5
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHHHH
Q 006916 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (625)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~~~ 106 (625)
-.|+.+|...+ .+.+.+|+.|+.++ +|..+.+...++.-.-.+.+.-+.+.++.-+.+|+-=... ...
T Consensus 49 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~--~~~ 116 (323)
T 3gd5_A 49 KVLGLVFLKAS---TRTRVSFTVAMYQL-------GGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFA--QTE 116 (323)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEC----------CCHHHHHHHHTTTCSEEEEECSS--HHH
T ss_pred CEEEEEecCCC---cchHhhHHHHHHHc-------CCeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC--hhH
Confidence 46888888765 47889999999985 4555555443433222334444555566655555531111 233
Q ss_pred HHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcC---CcEEEEEEecCCCCcchHHHHH
Q 006916 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTALG 180 (625)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~---W~~v~ii~~d~~~g~~~~~~l~ 180 (625)
+..+++..++|+|.-+. + ...| .+++++++ +++| -.+|+++.+ - ......+.
T Consensus 117 ~~~lA~~~~vPVINag~-~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vGD-~---~rva~Sl~ 174 (323)
T 3gd5_A 117 LEEYAHYAGIPVINALT-D-----HEHP------------CQVVADLLTIRENFGRLAGLKLAYVGD-G---NNVAHSLL 174 (323)
T ss_dssp HHHHHHHHCSCEEEEEC-S-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC-C---CHHHHHHH
T ss_pred HHHHHHhCCCCEEeCCC-C-----CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEECC-C---CcHHHHHH
Confidence 44556667899997432 2 1122 35666663 4554 467877652 2 35667777
Q ss_pred HHHhccceEEEEe
Q 006916 181 DKLAEIRCKISYK 193 (625)
Q Consensus 181 ~~l~~~g~~v~~~ 193 (625)
..+...|.++...
T Consensus 175 ~~~~~~G~~v~~~ 187 (323)
T 3gd5_A 175 LGCAKVGMSIAVA 187 (323)
T ss_dssp HHHHHHTCEEEEE
T ss_pred HHHHHcCCEEEEE
Confidence 7788888887653
No 211
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=52.09 E-value=26 Score=32.43 Aligned_cols=70 Identities=11% Similarity=-0.016 Sum_probs=46.9
Q ss_pred eHHHHHHHHHHC-CCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccc-cceEecccccccceEEEEec
Q 006916 491 CIDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT-KAVDFTQPYIESGLVVVAPV 568 (625)
Q Consensus 491 ~idl~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~~R~-~~vdfs~p~~~~~~~~l~~~ 568 (625)
-.++++.+.++. +.+ +++.. ++...++..|.+|++|+++.......++. ..+.+ .|+....+.++++.
T Consensus 42 l~~~l~~f~~~~P~i~--v~i~~-------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~~-~~l~~~~~~~v~~~ 111 (290)
T 1twy_A 42 MDVLAEKYNQQHPETY--VAVQG-------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLHT-FTLAFDGLAIVVNQ 111 (290)
T ss_dssp HHHHHHHHHHHCTTCE--EEEEE-------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCEE-EEEEEEEEEEEECT
T ss_pred HHHHHHHHHhhCCCce--EEEEe-------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCceE-EEEEeeeEEEEECC
Confidence 346777887776 555 66666 55889999999999999986543322110 23333 46777888888865
Q ss_pred CC
Q 006916 569 RK 570 (625)
Q Consensus 569 ~~ 570 (625)
..
T Consensus 112 ~~ 113 (290)
T 1twy_A 112 AN 113 (290)
T ss_dssp TC
T ss_pred CC
Confidence 44
No 212
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=51.91 E-value=41 Score=31.25 Aligned_cols=79 Identities=10% Similarity=0.032 Sum_probs=55.2
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh----hHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR----TGLM 233 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~----~~~~ 233 (625)
+.|+++..+ +.|.....+.+.+.+++.|..+.....- .+...-...++.+...+.+.||+..... ....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN-----NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHH
Confidence 789999874 4566677889999999999987754211 2244556677788788899888865432 3445
Q ss_pred HHHHHHHcCC
Q 006916 234 VFDVAQRLGM 243 (625)
Q Consensus 234 il~~a~~~g~ 243 (625)
.++++.+.++
T Consensus 91 ~~~~~~~~~i 100 (298)
T 3tb6_A 91 YYLNLEKNGI 100 (298)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 6777777664
No 213
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=51.87 E-value=1.5e+02 Score=28.73 Aligned_cols=134 Identities=16% Similarity=0.062 Sum_probs=76.1
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHHHH
Q 006916 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (625)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~~~ 106 (625)
-.|+.+|...+ .+.+..|+.|+.++ +|..+.+...++.-.-.+.+.-+.+.++.-+.+|+--.. ....
T Consensus 71 K~la~lF~epS---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~--~~~~ 138 (358)
T 4h31_A 71 KNIALIFEKAS---TRTRCAFEVAAFDQ-------GAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGF--GQAI 138 (358)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEECSSSSCBTTTBCHHHHHHHHHHHCSEEEEECS--CHHH
T ss_pred CEEEEEeCCCC---hhhHHHHHHHHHHc-------CCeEEECCcccccccCccchhHHHHHhhccCceeEeccc--chhH
Confidence 35888888765 37899999999985 455554433333222223333333444432333332111 2234
Q ss_pred HHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcCC-----cEEEEEEecCCCCcchHHH
Q 006916 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFGW-----GEVIAIFNDDDQGRNGVTA 178 (625)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~W-----~~v~ii~~d~~~g~~~~~~ 178 (625)
+..++....+|+|. +-+ +...| .+++++++ +++++ .+|+++. | ..+ .....
T Consensus 139 ~~~la~~s~vPVIN-G~g-----~~~HP------------tQaL~Dl~Ti~e~~~~~~l~gl~ia~vG-D-~~~-~va~S 197 (358)
T 4h31_A 139 VEELGAFAGVPVWN-GLT-----DEFHP------------TQILADFLTMLEHSQGKALADIQFAYLG-D-ARN-NVGNS 197 (358)
T ss_dssp HHHHHHHSSSCEEE-SCC-----SSCCH------------HHHHHHHHHHHHTTTTCCGGGCEEEEES-C-TTS-HHHHH
T ss_pred HHHhhhhccCceEC-CCC-----cCCCc------------hHHHHHHHHHHHHhcCCCcCceEEEecC-C-CCc-ccchH
Confidence 55667778899996 322 22222 36777775 35653 3677665 2 222 56777
Q ss_pred HHHHHhccceEEEEe
Q 006916 179 LGDKLAEIRCKISYK 193 (625)
Q Consensus 179 l~~~l~~~g~~v~~~ 193 (625)
+...+...|.++...
T Consensus 198 ~~~~~~~~g~~v~~~ 212 (358)
T 4h31_A 198 LMVGAAKMGMDIRLV 212 (358)
T ss_dssp HHHHHHHHTCEEEEE
T ss_pred HHHHHHhcCceEEEe
Confidence 888888888887653
No 214
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=51.18 E-value=42 Score=29.14 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=46.0
Q ss_pred cEEEEEEecCCC----CcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006916 160 GEVIAIFNDDDQ----GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 160 ~~v~ii~~d~~~----g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
-+|+||...|+- -......+...+++.|.++.....++.+ .+.+...+++..+.+.|+||..+..
T Consensus 31 ~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~DlVIttGGt 99 (185)
T 3rfq_A 31 GRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD----EVDIRNALNTAVIGGVDLVVSVGGT 99 (185)
T ss_dssp EEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC----HHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred CEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 467777764321 2345678888999999998887777744 7778888877654578999887543
No 215
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=51.10 E-value=1.7e+02 Score=28.06 Aligned_cols=133 Identities=16% Similarity=0.118 Sum_probs=76.0
Q ss_pred eEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCChHH
Q 006916 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVM 103 (625)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~--~v~aviG~~~s~~ 103 (625)
.-.|+.+|-..+ .+.+.+|+.|+.++ +|..+.+...+++-.-.+.+.-+.+.++. .++++=++.
T Consensus 45 gk~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~---- 110 (335)
T 1dxh_A 45 RKNIALIFEKTS---TRTRCAFEVAAYDQ-------GANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFK---- 110 (335)
T ss_dssp TCEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCBTTTBCHHHHHHHHHHHCSEEEEECSC----
T ss_pred CCEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCccccCcCCCcHHHHHHHHHhhCCEEEEecCC----
Confidence 346888887765 47899999999995 35555543333322222233333344443 333333432
Q ss_pred HHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcC--C--cEEEEEEecCCCCcchH
Q 006916 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG--W--GEVIAIFNDDDQGRNGV 176 (625)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~--W--~~v~ii~~d~~~g~~~~ 176 (625)
...+..+++..++|+|.-+ + +...| .+++++++ +++| . .+|+++.+ .. ....
T Consensus 111 ~~~~~~lA~~s~vPVINa~-~-----~~~HP------------tQ~LaDl~Ti~e~~g~~l~gl~va~vGD--~~-~~va 169 (335)
T 1dxh_A 111 QEIVEELAKFAGVPVFNGL-T-----DEYHP------------TQMLADVLTMREHSDKPLHDISYAYLGD--AR-NNMG 169 (335)
T ss_dssp HHHHHHHHHHSSSCEEEEE-C-----SSCCH------------HHHHHHHHHHHHTCSSCGGGCEEEEESC--CS-SHHH
T ss_pred hhHHHHHHHhCCCCEEcCC-C-----CCCCc------------HHHHHHHHHHHHHcCCCcCCeEEEEecC--Cc-cchH
Confidence 2334555667789999732 2 22223 35677764 5577 2 36666542 22 2577
Q ss_pred HHHHHHHhccceEEEEe
Q 006916 177 TALGDKLAEIRCKISYK 193 (625)
Q Consensus 177 ~~l~~~l~~~g~~v~~~ 193 (625)
..+...+...|.++...
T Consensus 170 ~Sl~~~~~~~G~~v~~~ 186 (335)
T 1dxh_A 170 NSLLLIGAKLGMDVRIA 186 (335)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 88888888889887653
No 216
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=50.93 E-value=52 Score=27.82 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=44.9
Q ss_pred EEEEEEecCC--CC---cchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC-CceEEEEEcch
Q 006916 161 EVIAIFNDDD--QG---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGYS 228 (625)
Q Consensus 161 ~v~ii~~d~~--~g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~vIvl~~~~ 228 (625)
+++||...|+ .| ......+.+.+++.|.++.....++.+ .+.+...+++..+. +.|+||..+..
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG~ 72 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDE----PPMIKKVLRLWADREGLDLILTNGGT 72 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCC----HHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 5666665332 11 235677889999999998877777744 77888888887654 68999887544
No 217
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=50.69 E-value=1.7e+02 Score=27.85 Aligned_cols=134 Identities=19% Similarity=0.194 Sum_probs=78.7
Q ss_pred eEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChHHH
Q 006916 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMA 104 (625)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG-~~~s~~~ 104 (625)
.-.|+.+|-..+ .+.+.+|+.|+.++ +|..+.+...++.-.-.+.+.-+.+.++.-+.+|+- ....
T Consensus 58 gk~la~lF~epS---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~--- 124 (325)
T 1vlv_A 58 GMTLAMIFEKRS---TRTRLAFETAFAEE-------GGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYKQ--- 124 (325)
T ss_dssp TCEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESSCH---
T ss_pred CCEEEEEeccCC---cchHHHHHHHHHHc-------CCeEEEECCccccCCCCcCHHHHHHHHHHhCCEEEEECCCh---
Confidence 356888887765 47899999999995 455555543333322233444555555554444442 1222
Q ss_pred HHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcC---CcEEEEEEecCCCCcchHHH
Q 006916 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTA 178 (625)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~---W~~v~ii~~d~~~g~~~~~~ 178 (625)
..+..+++..++|+|. +.+ +...| .+++++++ +++| -.+|+++.+ .. ......
T Consensus 125 ~~~~~lA~~~~vPVIN-a~~-----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD--~~-~rva~S 183 (325)
T 1vlv_A 125 ETVEKLAEYSGVPVYN-GLT-----DEFHP------------TQALADLMTIEENFGRLKGVKVVFMGD--TR-NNVATS 183 (325)
T ss_dssp HHHHHHHHHHCSCEEE-SCC-----SSCCH------------HHHHHHHHHHHHHHSCSTTCEEEEESC--TT-SHHHHH
T ss_pred HHHHHHHHhCCCCEEe-CCC-----CCCCc------------HHHHHHHHHHHHHhCCcCCcEEEEECC--CC-cCcHHH
Confidence 3334455566899997 222 22223 35666664 4555 247777653 22 357788
Q ss_pred HHHHHhccceEEEEe
Q 006916 179 LGDKLAEIRCKISYK 193 (625)
Q Consensus 179 l~~~l~~~g~~v~~~ 193 (625)
+...+...|.++...
T Consensus 184 l~~~~~~~G~~v~~~ 198 (325)
T 1vlv_A 184 LMIACAKMGMNFVAC 198 (325)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCEEEEE
Confidence 888888889887653
No 218
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=50.53 E-value=1.5e+02 Score=27.19 Aligned_cols=119 Identities=15% Similarity=0.097 Sum_probs=68.6
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCChHHH
Q 006916 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 104 (625)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~--~v~aviG~~~s~~~ 104 (625)
=+||.+.............|++-|+++.+ + .... .+.....+...+.+.+.+++.. .+.||+... ...+
T Consensus 127 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~g----~--~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~~A 197 (289)
T 3k9c_A 127 RNIAHIDGADAPGGADRRAGFLAAMDRHG----L--SASA--TVVTGGTTETEGAEGMHTLLEMPTPPTAVVAFN-DRCA 197 (289)
T ss_dssp CSEEEECCTTSTTHHHHHHHHHHHHHHTT----C--GGGE--EEECCCSSHHHHHHHHHHHHTSSSCCSEEEESS-HHHH
T ss_pred CcEEEEeCCCCccHHHHHHHHHHHHHHCC----C--CCCc--cEEECCCCHHHHHHHHHHHHcCCCCCCEEEECC-hHHH
Confidence 35777765543344556788888887742 1 1112 2233445677777788888874 688999754 3344
Q ss_pred HHHHHhhhcCC--Cc----EEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHH
Q 006916 105 HVLSHLANELQ--VP----LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY 156 (625)
Q Consensus 105 ~~va~~~~~~~--iP----~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~ 156 (625)
..+...+...+ +| ++++.... +.....|-+.....+...++...+++|..
T Consensus 198 ~g~~~al~~~g~~vP~di~vig~D~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l~~ 253 (289)
T 3k9c_A 198 TGVLDLLVRSGRDVPADISVVGYDDSR--LARIPHVQMTTISQDATHMAEAAVDGALA 253 (289)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEEECCT--TTTCTTTCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEECCHH--HHhcCCCCcceEecCHHHHHHHHHHHHHH
Confidence 44445554443 34 67765442 33322355555566666777777766543
No 219
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=50.48 E-value=46 Score=28.68 Aligned_cols=83 Identities=16% Similarity=0.126 Sum_probs=54.3
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+||+... . ...+-.+++..+.+... .+++++.. ++...+...|.+|++|+++..
T Consensus 4 ~g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~l~~~l~~g~~Dl~i~~ 61 (209)
T 2ql3_A 4 AGPIAVGCYPA--L------------GPTILPSMLYAFTAEYP-RASVEFRE-------DTQNRLRTQLEGGELDVAIVY 61 (209)
T ss_dssp CEEEEEEECGG--G------------TTTTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHTTSCSEEEEE
T ss_pred ceeEEEeechh--h------------hhhhHHHHHHHHHHHCC-CceEEEEE-------CcHHHHHHHHHcCCccEEEEe
Confidence 36789998421 1 12345678888888774 34477766 558899999999999999864
Q ss_pred eeeecccccceEecccccccceEEEEecC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVR 569 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~ 569 (625)
.. .....+.+ .++....+.++++..
T Consensus 62 ~~---~~~~~l~~-~~l~~~~~~~v~~~~ 86 (209)
T 2ql3_A 62 DL---DLSPEWQT-VPLMTREPMVVLGAE 86 (209)
T ss_dssp SS---SCCTTEEE-EEEEEECCEEEEETT
T ss_pred cC---CCCCCceE-EEeecCceEEEEeCC
Confidence 31 12223333 467777777877653
No 220
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=50.32 E-value=35 Score=32.89 Aligned_cols=80 Identities=4% Similarity=-0.008 Sum_probs=52.9
Q ss_pred CcEEEEEEecC---CCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHH
Q 006916 159 WGEVIAIFNDD---DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLM 233 (625)
Q Consensus 159 W~~v~ii~~d~---~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~ 233 (625)
-.+|++|..+. .|.....+.+++.+++.|+.+.... . . .+...-...++.+.. .+.+.||+.........
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~-~--~--~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~ 77 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILY-A--E--RDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQ 77 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEE-C--T--TCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEE-C--C--CCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHH
Confidence 35788888742 4566778888888888898876542 1 1 223444455666655 48898888764455667
Q ss_pred HHHHHHHcCC
Q 006916 234 VFDVAQRLGM 243 (625)
Q Consensus 234 il~~a~~~g~ 243 (625)
+++.+.+.|+
T Consensus 78 ~~~~~~~~gi 87 (350)
T 3h75_A 78 ILRLSQGSGI 87 (350)
T ss_dssp HHHHHTTSCC
T ss_pred HHHHHHhCCC
Confidence 7777776654
No 221
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=50.03 E-value=59 Score=28.85 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=57.4
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+||+... -...+-..++..+.+... .+++++.. ++...++..|.+|++|+++..
T Consensus 18 ~g~l~Ig~~~~--------------~~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 75 (241)
T 3oxn_A 18 DQTFTIATTDY--------------AMQTILPFALPRIYQEAP-NVSFNFLP-------LQHDRLSDQLTYEGADLAICR 75 (241)
T ss_dssp CCEEEEEECSH--------------HHHHTHHHHHHHHHHHCT-TCEEEEEE-------CCGGGHHHHHHTSCCSEEEEC
T ss_pred CceEEEEechH--------------HHHHHHHHHHHHHHHHCC-CCEEEEEE-------CCcccHHHHHHcCCCCEEEec
Confidence 47899999421 112455678888887763 23377766 558899999999999999874
Q ss_pred eeeecccccceEecccccccceEEEEecCC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
. ......+.+ .++....+.++++...
T Consensus 76 ~---~~~~~~~~~-~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 76 P---TGPVEPLRS-EILGRVGVLCLLSKQH 101 (241)
T ss_dssp C---SSCCTTEEE-EEEECCCEEEEEETTS
T ss_pred C---CCCCcccee-EEeecccEEEEEeCCC
Confidence 3 233344443 4677888888887654
No 222
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=49.70 E-value=18 Score=33.69 Aligned_cols=50 Identities=6% Similarity=-0.069 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHcCcccEEEeeeeeecccccceEecc--cccc-cceEEEEecC
Q 006916 520 PTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQ--PYIE-SGLVVVAPVR 569 (625)
Q Consensus 520 ~~~~g~~~~l~~~~~D~~~~~~~~t~~R~~~vdfs~--p~~~-~~~~~l~~~~ 569 (625)
++++.++..|.+|++|+++.+......+.+.+++.. ++.. ....+++++.
T Consensus 45 ~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~ 97 (280)
T 1zbm_A 45 EDIETLNRKAFNAEYEVTAISAHAYALLDDKYRILSAGASVGDGYGPVVVAKS 97 (280)
T ss_dssp CCHHHHHHHGGGTCCSEEEEEHHHHTTSTTTEEECSSCCEEESSCCCEEEESS
T ss_pred CCHHHHHHHHHcCCCCEEEECHHHHHHhcCCCcEEeeccccCCCeeEEEEEcC
Confidence 459999999999999999865444444444555542 3332 3344566654
No 223
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=49.50 E-value=1.5e+02 Score=26.87 Aligned_cols=170 Identities=11% Similarity=0.027 Sum_probs=84.3
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-------ChHHHHH----HHHHHHhcCcEEE
Q 006916 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-------NGFLSIM----GALQFMETDTLAI 95 (625)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~-------~~~~a~~----~~~~l~~~~v~av 95 (625)
.+|.+|-|.++ ..+-..+.-+++.+. .||.++.+...+... +...+.. .+.++..+++.+|
T Consensus 2 mrilvINPnts---~~~T~~i~~~~~~~~-----~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~i 73 (245)
T 3qvl_A 2 VRIQVINPNTS---LAMTETIGAAARAVA-----APGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGH 73 (245)
T ss_dssp EEEEEECSSCC---HHHHHHHHHHHHHHC-----CTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CEEEEEeCCCC---HHHHHHHHHHHHHhc-----CCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 47888888765 233345555555543 257788876655331 2222222 2223334588888
Q ss_pred EcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcch
Q 006916 96 VGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNG 175 (625)
Q Consensus 96 iG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~ 175 (625)
+=.-.+... +..+-+.+++|+|.. .++.+......+ ++|+||......
T Consensus 74 viaCnt~~~--l~~lr~~~~iPvigi-------------------------~e~~~~~a~~~~-~rigVlaT~~t~---- 121 (245)
T 3qvl_A 74 VIASFGDPG--LLAARELAQGPVIGI-------------------------AEAAMHMATMVA-TRFSIVTTLPRT---- 121 (245)
T ss_dssp EEC-CCCTT--HHHHHHHCSSCEEEH-------------------------HHHHHHHHHHHC-SCEEEEESCGGG----
T ss_pred EEeCCChhH--HHHHHHHcCCCEECc-------------------------cHHHHHHHHHcC-CEEEEEEcchhH----
Confidence 765544433 244445678998863 122222222224 789998865432
Q ss_pred HHHHHHHHhccceE--EEEeeecCCC--C--CCC---hhHHHHHHHH-HhcCCceEEEEEcch-hhHHHHHH
Q 006916 176 VTALGDKLAEIRCK--ISYKSALPPD--Q--SVT---ETDVRNELVK-VRMMEARVIVVHGYS-RTGLMVFD 236 (625)
Q Consensus 176 ~~~l~~~l~~~g~~--v~~~~~~~~~--~--~~~---~~~~~~~l~~-i~~~~~~vIvl~~~~-~~~~~il~ 236 (625)
...+++.+++.|.. +......... . ... ...+.+...+ +++.++++||+.|.. ......++
T Consensus 122 ~~~~~~~l~~~g~~~~~~~v~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~gad~IVLGCTh~p~l~~~i~ 193 (245)
T 3qvl_A 122 LIIARHLLHQYGFHQHCAALHAIDLPVLALEDGSGLAQEKVRERCIRALKEDGSGAIVLGSGGMATLAQQLT 193 (245)
T ss_dssp HHHHHHHHHHHTCGGGEEEEEECCSCGGGGGSSSSHHHHHHHHHHHHHHHHSCCSEEEECCGGGGGGHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEeCCCCCHHHHcCCcHHHHHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHH
Confidence 35566666665542 2211111110 0 011 1223333333 334688999997765 33334443
No 224
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=49.11 E-value=30 Score=30.48 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=56.1
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+||+... -...+-.+++..+.+... ++++++.. +....++..|.+|++|+++..
T Consensus 10 ~g~l~Ig~~~~--------------~~~~~l~~~l~~~~~~~P-~v~i~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 67 (232)
T 3ho7_A 10 TGRLNIAVLPT--------------IAPYLLPRVFPIWKKELA-GLEIHVSE-------MQTSRCLASLLSGEIDMAIIA 67 (232)
T ss_dssp CEEEEEEECTT--------------THHHHHHHHHHHHHHHST-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred ceeEEEEeccc--------------cchhhhHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEc
Confidence 46789998421 112355677888877764 34477766 558899999999999999875
Q ss_pred eeeecccccceEecccccccceEEEEecC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVR 569 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~ 569 (625)
.... ...+.+ .++....+.+++++.
T Consensus 68 ~~~~---~~~l~~-~~l~~~~~~~v~~~~ 92 (232)
T 3ho7_A 68 SKAE---TEGLED-DLLYYEEFLGYVSRC 92 (232)
T ss_dssp SCCC---CTTEEE-EEEEEEEEEEEECTT
T ss_pred CCCC---CCCeEE-EEecccCEEEEEcCC
Confidence 4332 233443 467778888888654
No 225
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=48.91 E-value=25 Score=33.54 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeee-eecccccceE-ec--ccccccc--eEEE
Q 006916 492 IDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIA-IVTNRTKAVD-FT--QPYIESG--LVVV 565 (625)
Q Consensus 492 idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~-~t~~R~~~vd-fs--~p~~~~~--~~~l 565 (625)
+..-+.+.++.|.+ ++++... +....++..|.+|++|+++++.+ +...|.+-.+ |. .++.... ..++
T Consensus 32 ~A~~~G~~~~~Gl~--V~~~~~~-----~g~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~i~ 104 (321)
T 2x7q_A 32 FAQQQGYYKAHDLS--IEFVKVP-----EGSGRLINLLNSNEVDIAIGLTEAFIADIAKGNENIHVLDTYVKSPLLWAVS 104 (321)
T ss_dssp HHHHTTHHHHTTCC--EEEEECT-----TCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEEEEEEEECSCCEEEEE
T ss_pred HHHHCCcHHHCCce--EEEEECC-----CCHHHHHHHHHcCCccEEecCcHHHHHHHHCCCCcEEEEEEecCCCcceEEE
Confidence 33333455677877 6666642 21234899999999999987764 3344544333 33 4455444 3677
Q ss_pred EecCC
Q 006916 566 APVRK 570 (625)
Q Consensus 566 ~~~~~ 570 (625)
+++.+
T Consensus 105 v~~ds 109 (321)
T 2x7q_A 105 TGSNR 109 (321)
T ss_dssp EESSC
T ss_pred ECCCC
Confidence 76543
No 226
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=48.64 E-value=95 Score=25.18 Aligned_cols=84 Identities=10% Similarity=0.060 Sum_probs=52.3
Q ss_pred EEEEEEecCCCCcchHHHHHHHHhccceEEEEeee-cCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh----hHHHHH
Q 006916 161 EVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSA-LPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR----TGLMVF 235 (625)
Q Consensus 161 ~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~-~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~----~~~~il 235 (625)
+|.+.....+.-.-+..-+...++..|+++.+--. .+ . ...++.+++.++++|.+++... .+..++
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p------~---e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i 75 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSP------Q---ELFIKAAIETKADAILVSSLYGQGEIDCKGLR 75 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEEC------H---HHHHHHHHHHTCSEEEEEECSSTHHHHHTTHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCC------H---HHHHHHHHhcCCCEEEEEecCcCcHHHHHHHH
Confidence 45444444444445677788889999999885432 22 2 3455666667899999876542 355667
Q ss_pred HHHHHcCCCCCCeEEEeeC
Q 006916 236 DVAQRLGMMDSGYVWIATT 254 (625)
Q Consensus 236 ~~a~~~g~~~~~~~~i~~~ 254 (625)
++.++.+.. .-.+|+...
T Consensus 76 ~~l~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 76 QKCDEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHHHHTTCT-TCEEEEEES
T ss_pred HHHHhcCCC-CCEEEEECC
Confidence 777776643 244555543
No 227
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=48.43 E-value=1.9e+02 Score=27.63 Aligned_cols=133 Identities=12% Similarity=0.145 Sum_probs=75.8
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEE--EEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHH
Q 006916 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLS--ITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (625)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~--~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~ 104 (625)
-.|+.+|...+ .+.+.+|+.|+.++. |..+. +.. ++.-.-.+.+.-+.+.++.-+.+|+-=... .
T Consensus 45 k~la~lF~e~S---TRTR~SFE~A~~~LG-------g~~i~~~l~~-~ss~~kgEsl~DTarvls~~~D~iviR~~~--~ 111 (328)
T 3grf_A 45 KTLLAFFAKPS---LRTRVSLETAMTRLG-------GHAIYYELGA-NSNVGGKETVQDTAEVFSRMVDICTARLAT--K 111 (328)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHHT-------CEEEEEEC-----------CHHHHHHHHTTTCSEEEEECSS--H
T ss_pred CEEEEEecCCC---chHHHHHHHHHHHCC-------CeEEccccCc-cccCCCCCCHHHHHHHHHhhCCEEEEecCC--h
Confidence 46888888765 478999999999973 45555 433 444333444555556666655555532222 2
Q ss_pred HHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcC----------CcEEEEEEecCCC
Q 006916 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG----------WGEVIAIFNDDDQ 171 (625)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~----------W~~v~ii~~d~~~ 171 (625)
..+..+++..++|+|.-+ + +...| .+++++++ +++| -.+|+++. |- .
T Consensus 112 ~~~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~vG-D~-~ 171 (328)
T 3grf_A 112 EMMREMAQHASVPCINAL--D----DFGHP------------LQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCG-DS-M 171 (328)
T ss_dssp HHHHHHHHHCSSCEEESS--C----SSCCH------------HHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEES-CC-S
T ss_pred hHHHHHHHhCCCCEEeCC--C----CCCCc------------HHHHHHHHHHHHHhCCccccccccCCcEEEEeC-CC-C
Confidence 344566677789999732 2 11222 25666653 4565 24777665 32 2
Q ss_pred CcchHHHHHHHHhccceEEEEe
Q 006916 172 GRNGVTALGDKLAEIRCKISYK 193 (625)
Q Consensus 172 g~~~~~~l~~~l~~~g~~v~~~ 193 (625)
. .....+...+...|.++...
T Consensus 172 ~-~va~Sl~~~~~~~G~~v~~~ 192 (328)
T 3grf_A 172 N-NVTYDLMRGCALLGMECHVC 192 (328)
T ss_dssp S-HHHHHHHHHHHHHTCEEEEE
T ss_pred c-chHHHHHHHHHHcCCEEEEE
Confidence 2 56778888888888877653
No 228
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=48.37 E-value=55 Score=30.58 Aligned_cols=77 Identities=8% Similarity=0.026 Sum_probs=53.3
Q ss_pred EEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHHH
Q 006916 161 EVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFDV 237 (625)
Q Consensus 161 ~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~~ 237 (625)
+|+++..+ +.|.....+.+.+.+++.|..+..... . +.......++.+...+.+.||+.... ......+++
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~---~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~ 77 (306)
T 8abp_A 4 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---P---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAK 77 (306)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC---C---SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC---C---CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHH
Confidence 67888764 455667788888899999988764432 1 24455667777777889988887543 445566777
Q ss_pred HHHcCC
Q 006916 238 AQRLGM 243 (625)
Q Consensus 238 a~~~g~ 243 (625)
+.+.|+
T Consensus 78 ~~~~~i 83 (306)
T 8abp_A 78 ARGYDM 83 (306)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 877664
No 229
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=48.24 E-value=19 Score=33.22 Aligned_cols=79 Identities=13% Similarity=0.019 Sum_probs=51.1
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~ 237 (625)
+.|+++..+ +.|.....+.+.+.+++.|..+..... . .+...-...++.+...+.+.||+..........++.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS---D--DQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRE 77 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC---C--CCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHH
Confidence 467888764 345566778888888889988765321 1 224445667777777888888876544222445566
Q ss_pred HHHcCC
Q 006916 238 AQRLGM 243 (625)
Q Consensus 238 a~~~g~ 243 (625)
+.+.|+
T Consensus 78 ~~~~~i 83 (272)
T 3o74_A 78 LQDKGL 83 (272)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 666554
No 230
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=47.53 E-value=50 Score=27.99 Aligned_cols=80 Identities=11% Similarity=-0.011 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEE
Q 006916 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 225 (625)
Q Consensus 146 ~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~ 225 (625)
.++......++++-+++.++ +|........+.+.+.....|+++.. ++ .++....+++-+..+.++++++
T Consensus 14 HGQV~t~W~k~~~~~~IiVv-nD~vA~D~~~k~~lk~a~P~gvk~~i---~s------ve~ai~~~~~~~~~~~~v~ll~ 83 (164)
T 1nrz_A 14 HGQVTTVWSKVANAQRIIIC-NDDVFNDEVRRTLLRQAAPPGMKVNV---VS------LEKAVAVYHNPQYQDETVFYLF 83 (164)
T ss_dssp CHHHHHHHHHHHTCSEEEEE-CHHHHTCHHHHHHHHHTCCTTCEEEE---EC------HHHHHHHHTCGGGTTCEEEEEE
T ss_pred chhheeeeccccCCCEEEEe-CccccCCHHHHHHHHhcCCCCCeEEE---EE------HHHHHHHHhcccCCCceEEEEE
Confidence 47788899999999999654 45444445667777777777887663 22 3444445544444678899999
Q ss_pred cchhhHHHHH
Q 006916 226 GYSRTGLMVF 235 (625)
Q Consensus 226 ~~~~~~~~il 235 (625)
-++.++..++
T Consensus 84 k~p~d~~~lv 93 (164)
T 1nrz_A 84 TNPHDVLTMV 93 (164)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999888765
No 231
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=46.66 E-value=49 Score=31.40 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=54.0
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~ 236 (625)
++|+++..+ +.|.....+.+.+.+++.|..+.... . . .+...-...++.+...+.+.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~-~--~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY--A-D--DDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLK 78 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE--C-T--TCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee--C-C--CCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHH
Confidence 578888874 45666778889999999998876543 1 1 234444566777766788988876544 34566777
Q ss_pred HHHHcCC
Q 006916 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~g~ 243 (625)
++.+.|+
T Consensus 79 ~~~~~gi 85 (330)
T 3uug_A 79 QAGEQGI 85 (330)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7877664
No 232
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=46.10 E-value=37 Score=31.53 Aligned_cols=80 Identities=8% Similarity=0.075 Sum_probs=53.6
Q ss_pred CcEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHH
Q 006916 159 WGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVF 235 (625)
Q Consensus 159 W~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il 235 (625)
=+.|+++..+ +.|.....+.+.+.+++.|..+..... . .+.......++.+...+.+.||+.... ......+
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~ 82 (293)
T 3l6u_A 8 RNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS---Q--NSRISEREQILEFVHLKVDAIFITTLDDVYIGSAI 82 (293)
T ss_dssp -CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---S--SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHH
T ss_pred CcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC---C--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHH
Confidence 3678888864 345556778888899999988775421 1 234455667777777888888876543 4444677
Q ss_pred HHHHHcCC
Q 006916 236 DVAQRLGM 243 (625)
Q Consensus 236 ~~a~~~g~ 243 (625)
+++.+.++
T Consensus 83 ~~~~~~~i 90 (293)
T 3l6u_A 83 EEAKKAGI 90 (293)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 77777664
No 233
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=46.07 E-value=17 Score=32.20 Aligned_cols=71 Identities=10% Similarity=-0.035 Sum_probs=45.5
Q ss_pred eHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCc-ccEEEeeeeeecc---cccceE--ecccccccceEE
Q 006916 491 CIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGV-FDAAVGDIAIVTN---RTKAVD--FTQPYIESGLVV 564 (625)
Q Consensus 491 ~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~-~D~~~~~~~~t~~---R~~~vd--fs~p~~~~~~~~ 564 (625)
--++++.+.++-|.+ +++.. ++-..++..|.+|+ +|+++..-....+ +...+. -..|+....+.+
T Consensus 14 l~~~~~~F~~~p~i~--v~~~~-------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 84 (231)
T 1atg_A 14 LEQLAGQFAKQTGHA--VVISS-------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVL 84 (231)
T ss_dssp HHHHHHHHHHHHCCC--EEEEE-------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEE
T ss_pred HHHHHHHHHhccCCe--EEEEE-------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEE
Confidence 346777777776777 55554 44788999999998 9998763211111 112111 246788888899
Q ss_pred EEecCC
Q 006916 565 VAPVRK 570 (625)
Q Consensus 565 l~~~~~ 570 (625)
++++..
T Consensus 85 v~~~~~ 90 (231)
T 1atg_A 85 WSAKPG 90 (231)
T ss_dssp EESSTT
T ss_pred EEcCCC
Confidence 887654
No 234
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=46.07 E-value=1e+02 Score=28.25 Aligned_cols=86 Identities=12% Similarity=0.051 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 006916 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (625)
Q Consensus 148 ~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 227 (625)
..++.-.... -.-+.+++ |..|.....+.+...-+..++.|.....+ .+.+ ++.+.+..++++|.+.+.
T Consensus 64 ~~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi-------~~~~--qi~ea~~~GAD~ilLi~a 132 (251)
T 1i4n_A 64 EDFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFY-------IDTV--QVKLASSVGADAILIIAR 132 (251)
T ss_dssp HHHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCC-------CSTH--HHHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCC-------CCHH--HHHHHHHcCCCEEEEecc
Confidence 4455555555 67777776 55566667777776655556766643322 1223 355578899999999766
Q ss_pred h---hhHHHHHHHHHHcCCC
Q 006916 228 S---RTGLMVFDVAQRLGMM 244 (625)
Q Consensus 228 ~---~~~~~il~~a~~~g~~ 244 (625)
. .....+++.++++||.
T Consensus 133 ~l~~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 133 ILTAEQIKEIYEAAEELGMD 152 (251)
T ss_dssp GSCHHHHHHHHHHHHTTTCE
T ss_pred cCCHHHHHHHHHHHHHcCCe
Confidence 5 5788899999998874
No 235
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=45.90 E-value=49 Score=29.07 Aligned_cols=84 Identities=12% Similarity=0.151 Sum_probs=56.7
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+||+.. . ....+-..++..+.++.. .+++++.. ++...++..|.+|++|+++..
T Consensus 7 ~g~l~Ig~~~--~------------~~~~~lp~~l~~f~~~~P-~v~l~l~~-------~~~~~l~~~L~~g~iDl~i~~ 64 (218)
T 2y7p_A 7 TRTFNLAMTD--I------------GEMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGL 64 (218)
T ss_dssp CCEEEEECCH--H------------HHHHHHHHHHHHHHHHCT-TCEEEEEC-------CCTTTHHHHHHHTSSCEEEEC
T ss_pred ceEEEEEecH--H------------HHHHHHHHHHHHHHHHCC-CCEEEEEe-------CCcccHHHHHhCCCceEEEec
Confidence 4778998841 1 112455678888887764 33477766 557899999999999999863
Q ss_pred eeeecccccceEecccccccceEEEEecCC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
. ......+++ .|+....+.++++...
T Consensus 65 ~---~~~~~~l~~-~~l~~~~~~~v~~~~h 90 (218)
T 2y7p_A 65 L---PELQTGFFQ-RRLFRHRYVCMFRKDH 90 (218)
T ss_dssp C---TTCCTTEEE-EEEEEECEEEEEETTC
T ss_pred C---CCCCcceeE-EEeeeccEEEEEcCCC
Confidence 2 222334555 4788888888887644
No 236
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=45.36 E-value=82 Score=28.62 Aligned_cols=94 Identities=9% Similarity=-0.022 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCcEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEE
Q 006916 147 MSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV 224 (625)
Q Consensus 147 ~~al~~ll~~~~W~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl 224 (625)
....++.++..|.+.|-+.... ........+.+++.+++.|+.+........ .....+...++..+.-+++.|++
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A~~lGa~~v~~ 108 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM---KSEEEIDRAFDYAKRVGVKLIVG 108 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE---CSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc---CCHHHHHHHHHHHHHhCCCEEEe
Confidence 3567778888999988765431 122334568899999999998765432221 23567777888777788888887
Q ss_pred EcchhhHHHHHHHHHHcCC
Q 006916 225 HGYSRTGLMVFDVAQRLGM 243 (625)
Q Consensus 225 ~~~~~~~~~il~~a~~~g~ 243 (625)
....+....+.+.|.+.|+
T Consensus 109 ~p~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 109 VPNYELLPYVDKKVKEYDF 127 (257)
T ss_dssp EECGGGHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 6656677777777777774
No 237
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=45.05 E-value=29 Score=33.02 Aligned_cols=80 Identities=11% Similarity=0.019 Sum_probs=50.8
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~ 236 (625)
++|+++..+ +.|.....+.+++.+++.|+++... .+.. .+...-...++.+...+.+.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~--~~~~--~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~ 79 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYD--GPTE--PSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALK 79 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEEC--CCSS--CCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEE--CCCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 568888753 3455566778888888889876532 1112 234444566777777788988876443 33356777
Q ss_pred HHHHcCC
Q 006916 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~g~ 243 (625)
.+.+.|+
T Consensus 80 ~a~~~gi 86 (316)
T 1tjy_A 80 RAMQRGV 86 (316)
T ss_dssp HHHHTTC
T ss_pred HHHHCcC
Confidence 7877664
No 238
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=44.99 E-value=71 Score=30.66 Aligned_cols=75 Identities=13% Similarity=0.033 Sum_probs=46.9
Q ss_pred cEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHH
Q 006916 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQ 239 (625)
Q Consensus 160 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~ 239 (625)
+++.+|+.-..-.....+.+.+.+++.|+.+....+-.. .+.....+++...+.+.||+.+.......++..+.
T Consensus 30 ~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~~------~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~ 103 (332)
T 2bon_A 30 PASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEK------GDAARYVEEARKFGVATVIAGGGDGTINEVSTALI 103 (332)
T ss_dssp CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCST------THHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecCc------chHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHh
Confidence 678888753322114567788888888887765433222 23334444444456788888877777778887776
Q ss_pred H
Q 006916 240 R 240 (625)
Q Consensus 240 ~ 240 (625)
+
T Consensus 104 ~ 104 (332)
T 2bon_A 104 Q 104 (332)
T ss_dssp H
T ss_pred h
Confidence 4
No 239
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=44.94 E-value=72 Score=30.43 Aligned_cols=86 Identities=6% Similarity=-0.088 Sum_probs=53.5
Q ss_pred HHHHHcCCcEEEEEEec----CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 006916 152 EMVSYFGWGEVIAIFND----DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (625)
Q Consensus 152 ~ll~~~~W~~v~ii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 227 (625)
.-++.-.-+.|+++..+ +.|.....+.+.+.+++.|..+..... . .+...-...++.+...+.+.||+...
T Consensus 54 ~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 54 RNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG---K--HSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp ------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC---T--TSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC---C--CChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 33444455789999876 345556778888899999998765431 1 22444455777777788998888765
Q ss_pred hhhHHHHHHHHHHcC
Q 006916 228 SRTGLMVFDVAQRLG 242 (625)
Q Consensus 228 ~~~~~~il~~a~~~g 242 (625)
......+.+.+.+.+
T Consensus 129 ~~~~~~~~~~~~~~~ 143 (338)
T 3dbi_A 129 FLSVDEIDDIIDAHS 143 (338)
T ss_dssp SSCHHHHHHHHHHCS
T ss_pred CCChHHHHHHHHcCC
Confidence 433444555566555
No 240
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=44.68 E-value=51 Score=27.98 Aligned_cols=80 Identities=8% Similarity=0.004 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEE
Q 006916 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 225 (625)
Q Consensus 146 ~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~ 225 (625)
.++......++++-+++.++ +|........+.+.+.....|+++.. ++ .++....+++-+..+.++++++
T Consensus 17 HGQV~t~W~~~~~~~~IiVv-nD~vA~D~~~k~~lk~a~P~gvk~~i---~s------ve~ai~~~~~~~~~~~~v~ll~ 86 (165)
T 1vsq_C 17 HGQVATRWTKETNVSRIIVV-SDEVAADTVRKTLLTQVAPPGVTAHV---VD------VAKMIRVYNNPKYAGERVMLLF 86 (165)
T ss_dssp CTTHHHHHHHHTTCSEEEEE-CHHHHTCHHHHHHHHHTCCTTCEEEE---EC------HHHHHHHHTCGGGTTCEEEEEE
T ss_pred chheeeeeccccCCCEEEEe-CccccCCHHHHHHHHhcCCCCCeEEE---EE------HHHHHHHHhccccCCcEEEEEE
Confidence 36778889999999999654 45444445667777777777887663 22 3444444544444677899999
Q ss_pred cchhhHHHHH
Q 006916 226 GYSRTGLMVF 235 (625)
Q Consensus 226 ~~~~~~~~il 235 (625)
-++.++..++
T Consensus 87 k~p~d~~~lv 96 (165)
T 1vsq_C 87 TNPTDVERLV 96 (165)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999888775
No 241
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=44.66 E-value=78 Score=29.23 Aligned_cols=84 Identities=6% Similarity=-0.120 Sum_probs=50.1
Q ss_pred HHHcCCcEEEEEEec----CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh
Q 006916 154 VSYFGWGEVIAIFND----DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 229 (625)
Q Consensus 154 l~~~~W~~v~ii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~ 229 (625)
|+.-.=..|+++..+ +.|.....+.+.+.+++.|..+... ... .+.......++.+...+.+.||+.....
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~ 88 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLA---DGK--HSAEEERQAIQYLLDLRCDAIMIYPRFL 88 (296)
T ss_dssp -----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEE---CCT--TSHHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred hhcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEE---eCC--CCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 333344689988865 3566677888899999999887643 211 2244455667777777889888865432
Q ss_pred hHHHHHHHHHH-cCC
Q 006916 230 TGLMVFDVAQR-LGM 243 (625)
Q Consensus 230 ~~~~il~~a~~-~g~ 243 (625)
.. ..++.+.+ .++
T Consensus 89 ~~-~~~~~l~~~~~i 102 (296)
T 3brq_A 89 SV-DEIDDIIDAHSQ 102 (296)
T ss_dssp CH-HHHHHHHHTCSS
T ss_pred Ch-HHHHHHHhcCCC
Confidence 22 34555655 553
No 242
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=44.28 E-value=78 Score=26.78 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=41.1
Q ss_pred EEEEEEecCCC--C---cchHHHHHHH----HhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006916 161 EVIAIFNDDDQ--G---RNGVTALGDK----LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 161 ~v~ii~~d~~~--g---~~~~~~l~~~----l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
+++||...|+- | ......+.+. +++.|+++.....++.+ .+.+...+++..+.+.|+||..+..
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd----~~~I~~~l~~a~~~~~DlVittGG~ 79 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG----YDTVVEAIATALKQGARFIITAGGT 79 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS----HHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC----HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 56666653321 1 2345677888 88899988877777744 7778888888765458999887543
No 243
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=44.27 E-value=51 Score=30.74 Aligned_cols=80 Identities=13% Similarity=0.007 Sum_probs=50.2
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~ 236 (625)
.+|+++..+ +.|.....+.+++.+++.|+.+.... +.. .+.......++.+...+.+.||+.... ......++
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~--~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSS--TDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFK 80 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSS--SCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 467777653 45566677888888888998875321 111 234444566777777788888876543 33445667
Q ss_pred HHHHcCC
Q 006916 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~g~ 243 (625)
.+.+.++
T Consensus 81 ~~~~~~i 87 (303)
T 3d02_A 81 KARDAGI 87 (303)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7766553
No 244
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=43.68 E-value=1.9e+02 Score=28.04 Aligned_cols=138 Identities=11% Similarity=0.125 Sum_probs=75.1
Q ss_pred eEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe------cCCC------ChHHHHHHHHHHHhc--C
Q 006916 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMH------DAKF------NGFLSIMGALQFMET--D 91 (625)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~------D~~~------~~~~a~~~~~~l~~~--~ 91 (625)
.-.|+.+|...+ .+.+.+|+.|+.++ +|..+.+... +++- .-.+.+.-+.+.++. .
T Consensus 58 gk~la~lF~epS---TRTR~SFE~A~~~L-------Gg~~i~l~~~~~ss~~~s~~~~vm~~~kgEsl~DTarvLs~y~D 127 (359)
T 1zq6_A 58 GKSIALVFFNPS---MRTRTSFELGAFQL-------GGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVARVLGRYVD 127 (359)
T ss_dssp TCEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECHHHHSCCEECSSSCCCCSSCCEEHHHHHHHHHHHCS
T ss_pred CCEEEEEeCCCC---cchhhhHHHHHHHc-------CCeEEEeCCCcccccccccccccccCCCCCcHHHHHHHHHHhCc
Confidence 456888888765 47889999999985 4555554333 2221 112223333333333 2
Q ss_pred cEEEEcCC-C--hH---HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHH---HHHcCC---
Q 006916 92 TLAIVGPQ-S--AV---MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM---VSYFGW--- 159 (625)
Q Consensus 92 v~aviG~~-~--s~---~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~l---l~~~~W--- 159 (625)
++++=.+. . -. ....+..+++..++|+|.-+ ++ . +| .++++++ .+++|.
T Consensus 128 ~IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVINag-~g-----~--------HP-----tQaLaDl~TI~E~~g~~~l 188 (359)
T 1zq6_A 128 LIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINME-TI-----T--------HP-----CQELAHALALQEHFGTPDL 188 (359)
T ss_dssp EEEEECCCCSSCHHHHTTCHHHHHHHHHCSSCEEESS-SS-----C--------CH-----HHHHHHHHHHHHHHTSSCC
T ss_pred EEEEeccccccccccccchHHHHHHHHhCCCCEEeCC-CC-----C--------Cc-----HHHHHHHHHHHHHhCCCcc
Confidence 33333331 0 00 22344556667789999732 11 1 22 2566665 355664
Q ss_pred --cE--EEEEEecCCC-CcchHHHHHHHHhccceEEEEe
Q 006916 160 --GE--VIAIFNDDDQ-GRNGVTALGDKLAEIRCKISYK 193 (625)
Q Consensus 160 --~~--v~ii~~d~~~-g~~~~~~l~~~l~~~g~~v~~~ 193 (625)
.+ |+++. |-.+ |......+...+...|.++...
T Consensus 189 ~glkvvva~vG-Dl~~~~nrva~Sl~~~~~~~G~~v~~~ 226 (359)
T 1zq6_A 189 RGKKYVLTWTY-HPKPLNTAVANSALTIATRMGMDVTLL 226 (359)
T ss_dssp TTCEEEEEECC-CSSCCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCeeEEEEEe-cccccccchHHHHHHHHHHcCCEEEEE
Confidence 46 44443 3222 3467788888888889887653
No 245
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=43.47 E-value=40 Score=30.92 Aligned_cols=80 Identities=6% Similarity=-0.046 Sum_probs=51.8
Q ss_pred EEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCC-ceEEEEEcc-hhhHHHHHH
Q 006916 161 EVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGY-SRTGLMVFD 236 (625)
Q Consensus 161 ~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~vIvl~~~-~~~~~~il~ 236 (625)
+|+++..+ +.|.....+.+++.+++.|..+.....- .. .+...-...++.+.+.+ .+.||+... .......++
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~--~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~ 78 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTK-DD--GDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVA 78 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCS-ST--TCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCC-CC--CCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHH
Confidence 57777753 4566677888888999999887643211 11 23444456677777677 888888653 344556777
Q ss_pred HHHHcCC
Q 006916 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~g~ 243 (625)
.+.+.++
T Consensus 79 ~~~~~~i 85 (276)
T 3ksm_A 79 QYRARNI 85 (276)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 246
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=43.44 E-value=2e+02 Score=26.60 Aligned_cols=87 Identities=17% Similarity=0.037 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 006916 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (625)
Q Consensus 148 ~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 227 (625)
..++.-....|-..+.++.+.. |.....+.+...-+..++.|.....+- . .+ ++.+.+..+++.|++...
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~-~f~Gs~~~L~~ir~~v~lPVl~Kdfi~-d------~~--qi~ea~~~GAD~VlLi~a 151 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTP-SFQGAPEFLTAARQACSLPALRKDFLF-D------PY--QVYEARSWGADCILIIMA 151 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCST-TTCCCHHHHHHHHHTSSSCEEEESCCC-S------TH--HHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHHCCCCEEEEecccc-ccCCCHHHHHHHHHhcCCCEEECCccC-C------HH--HHHHHHHcCCCEEEEccc
Confidence 4577777888999999887544 444566666665555567665332221 1 11 466677889999988753
Q ss_pred ---hhhHHHHHHHHHHcCCC
Q 006916 228 ---SRTGLMVFDVAQRLGMM 244 (625)
Q Consensus 228 ---~~~~~~il~~a~~~g~~ 244 (625)
......++..++++||.
T Consensus 152 ~L~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 152 SVDDDLAKELEDTAFALGMD 171 (272)
T ss_dssp TSCHHHHHHHHHHHHHTTCE
T ss_pred ccCHHHHHHHHHHHHHcCCe
Confidence 35788899999999874
No 247
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=43.35 E-value=17 Score=36.58 Aligned_cols=89 Identities=8% Similarity=-0.016 Sum_probs=53.9
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCC-CccEEEEeCCCCCCCCCHHHHHHHHHcCc----cc
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPY-AVPYKFIPYGDGHKNPTYSELINQITTGV----FD 535 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~g~~~~l~~~~----~D 535 (625)
..+|+||......+.|+... .-+.+.++.|. + ++++.. ++|..++..|..|+ +|
T Consensus 32 ~~~l~ig~~~~~~~~p~~vA-------------~~~G~~~~~Gl~~--Ve~~~~------~~~~~~~~al~~G~~~~giD 90 (417)
T 2g29_A 32 VTTAKLGFIALTDAAPLIIA-------------KEKGFYAKYGMPD--VEVLKQ------ASWGTTRDNLVLGSASGGID 90 (417)
T ss_dssp CSCCEEEECSSGGGHHHHHH-------------HHTTHHHHTTCTT--CEEEEC------SCHHHHHHHHHHCGGGTSCS
T ss_pred CceEEEEeeccHhHHHHHHH-------------HHCCchHHcCCCe--eEEEec------CCHHHHHHHHHCCCCcCCcC
Confidence 35689998543333343221 11124556687 7 666664 45999999999999 99
Q ss_pred EEEee--ee--eecc---cccceEecccc--cccceEEEEecCC
Q 006916 536 AAVGD--IA--IVTN---RTKAVDFTQPY--IESGLVVVAPVRK 570 (625)
Q Consensus 536 ~~~~~--~~--~t~~---R~~~vdfs~p~--~~~~~~~l~~~~~ 570 (625)
++... +. ++.. |.+..++..+. ...+..|+++...
T Consensus 91 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~v~~~~ 134 (417)
T 2g29_A 91 GAHILTPMPYLITMGTVTDGKPTPMYILARLNVNGQGIQLGNNY 134 (417)
T ss_dssp EEEEETHHHHHHHHCTTSSSCCCCEEEEEECCBSCEEEEECGGG
T ss_pred eEeecchHHHHHHhCcccCCCCCCEEEEEEeccCCeEEEEecch
Confidence 99863 22 2322 33445555443 4457888887643
No 248
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=43.22 E-value=48 Score=30.77 Aligned_cols=80 Identities=4% Similarity=-0.095 Sum_probs=51.7
Q ss_pred CCcEEEEEEec-------CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhh
Q 006916 158 GWGEVIAIFND-------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT 230 (625)
Q Consensus 158 ~W~~v~ii~~d-------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~ 230 (625)
+=+.|+++..+ +.|.....+.+.+.+++.|..+... ... .+.......++.+...+.+.||+......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~~ 81 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGE--TEEEIFNGVVKMVQGRQIGGIILLYSREN 81 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCC--SHHHHHHHHHHHHHTTCCCEEEESCCBTT
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCC--CCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 34678888766 3456677888888999999877642 222 22334456677777788998887644322
Q ss_pred HHHHHHHHHHcCC
Q 006916 231 GLMVFDVAQRLGM 243 (625)
Q Consensus 231 ~~~il~~a~~~g~ 243 (625)
...++.+.+.++
T Consensus 82 -~~~~~~l~~~~i 93 (292)
T 3k4h_A 82 -DRIIQYLHEQNF 93 (292)
T ss_dssp -CHHHHHHHHTTC
T ss_pred -hHHHHHHHHCCC
Confidence 245666666664
No 249
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=42.87 E-value=22 Score=34.85 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=44.8
Q ss_pred HHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccccceE-ec-cccc
Q 006916 493 DVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVD-FT-QPYI 558 (625)
Q Consensus 493 dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~~R~~~vd-fs-~p~~ 558 (625)
.+.+.+.++.|=++++++.+.+ .-|....++..|..|.+|+++........+...+. |+ .||.
T Consensus 54 ~fa~~v~e~t~G~v~i~v~~~g---~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~~lP~~ 118 (361)
T 2zzv_A 54 KFTERVKELTDGQLEVQPFPAG---AVVGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLSSYALG 118 (361)
T ss_dssp HHHHHHHHHTTTSEEEEEECTT---SSSCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSSCCTTS
T ss_pred HHHHHHHHhcCCeEEEEEeCCC---cccCHHHHHHHHHcCceeEEEeccccccccCcHHHHHhcCCCC
Confidence 4667788888866556666531 11468999999999999999887777666655544 33 6764
No 250
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=42.76 E-value=35 Score=32.14 Aligned_cols=86 Identities=1% Similarity=-0.124 Sum_probs=52.3
Q ss_pred HHHHHcCCcEEEEEEec-------CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEE
Q 006916 152 EMVSYFGWGEVIAIFND-------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV 224 (625)
Q Consensus 152 ~ll~~~~W~~v~ii~~d-------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl 224 (625)
.-++.-.-+.|+++..+ +.|.....+.+.+.+++.|..+... ... .+.......++.+...+.+.||+
T Consensus 15 r~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgiIi 89 (305)
T 3huu_A 15 RTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSE--NSGDLYHEVKTMIQSKSVDGFIL 89 (305)
T ss_dssp ------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCS--SHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCC--CChHHHHHHHHHHHhCCCCEEEE
Confidence 33444455789988876 3455667788888999999887642 221 22333456777788888998888
Q ss_pred EcchhhHHHHHHHHHHcCC
Q 006916 225 HGYSRTGLMVFDVAQRLGM 243 (625)
Q Consensus 225 ~~~~~~~~~il~~a~~~g~ 243 (625)
...... ...++.+.+.++
T Consensus 90 ~~~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 90 LYSLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp SSCBTT-CHHHHHHHHTTC
T ss_pred eCCcCC-cHHHHHHHHcCC
Confidence 654322 245666666664
No 251
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=42.45 E-value=2.1e+02 Score=26.47 Aligned_cols=59 Identities=14% Similarity=0.002 Sum_probs=37.0
Q ss_pred CCCcEEEEEEecCC------CChHHHHHHHH----HHHhcCcEEEEcCCChHHHHHHHHhhhcCCCcEEe
Q 006916 61 LGGRKLSITMHDAK------FNGFLSIMGAL----QFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (625)
Q Consensus 61 L~g~~l~~~~~D~~------~~~~~a~~~~~----~l~~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 120 (625)
||+..+.| +.|+. .+.....+.+. .+.+.++.+|+=+-++..+.++..+-+.+.+|+|.
T Consensus 47 lP~e~~iy-~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvig 115 (274)
T 3uhf_A 47 RLFDEIIY-YGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYG 115 (274)
T ss_dssp TCCSEEEE-EECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEEC
T ss_pred CCCCCEEE-EecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEc
Confidence 47887766 44642 13333333333 33345999998866666655567777788999995
No 252
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=42.29 E-value=49 Score=30.67 Aligned_cols=79 Identities=5% Similarity=0.039 Sum_probs=50.3
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~ 236 (625)
++|+++..+ +.|.....+.+++.+++.|..+..... . .+...-...++.+...+.+.||+.... +.....++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 77 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---Q--NDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVK 77 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 467888764 456666778888888899988764321 1 223444556777777788888876543 33334566
Q ss_pred HHHHcCC
Q 006916 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~g~ 243 (625)
.+.+.++
T Consensus 78 ~~~~~~i 84 (290)
T 2fn9_A 78 RAKEAGI 84 (290)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6666553
No 253
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=41.04 E-value=40 Score=31.50 Aligned_cols=81 Identities=7% Similarity=-0.066 Sum_probs=53.4
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc-hhhHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-~~~~~~il~ 236 (625)
.+|+++..+ +.|.....+.+.+.+++.|..+.....-.. .+...-...++.+...+.+.||+... .......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGA---NDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQ 80 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSS---CCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCc---CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 367777764 456667788888899999988875431110 13445556777777788998887543 344456777
Q ss_pred HHHHcCC
Q 006916 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~g~ 243 (625)
++.+.|+
T Consensus 81 ~~~~~gi 87 (297)
T 3rot_A 81 RANKLNI 87 (297)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 7777664
No 254
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=40.84 E-value=2.4e+02 Score=26.84 Aligned_cols=136 Identities=10% Similarity=0.135 Sum_probs=76.6
Q ss_pred eEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCC------------hHHHHHHHHHHHhcCcE
Q 006916 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFN------------GFLSIMGALQFMETDTL 93 (625)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~------------~~~a~~~~~~l~~~~v~ 93 (625)
.-.|+.+|-..+ .+.+.+|+.|+.++ +|..+.+...++.-. -.+.+.-+.+.++.=+.
T Consensus 36 gk~l~~lF~epS---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~~e~~~g~~m~~~kgEsl~DTarvLs~y~D 105 (324)
T 1js1_X 36 NKTLLMIFFNSS---LRTRLSTQKAALNL-------GMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCD 105 (324)
T ss_dssp TCEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEECCGGGCCEECCSSCCCCSSCCEEHHHHHHHHHHTCS
T ss_pred CCEEEEEecCCC---cchHHHHHHHHHHc-------CCEEEEECCCCCceeeccccccccccCCCCCHHHHHHHHHHhCc
Confidence 357888888765 37899999999996 344455433332211 22234444444444334
Q ss_pred EEE--cCC-C-----hHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcC---C
Q 006916 94 AIV--GPQ-S-----AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---W 159 (625)
Q Consensus 94 avi--G~~-~-----s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~---W 159 (625)
+|+ .+. . ......+..+++..++|+|.- .+ +...| .+++++++ +++| .
T Consensus 106 ~IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVINa-~~-----~~~HP------------tQaLaDl~Ti~e~~g~~~l 167 (324)
T 1js1_X 106 IIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSM-EA-----ATRHP------------LQSFADLITIEEYKKTARP 167 (324)
T ss_dssp EEEEECCCCSSCHHHHHHTHHHHHHHHHSSSCEEES-SC-----SSCCH------------HHHHHHHHHHHHHCSSSSC
T ss_pred EEEEecccccccccccccchHHHHHHhhCCCCEEEC-CC-----CCCCc------------HHHHHHHHHHHHHcCCCCe
Confidence 443 320 0 002334556667778999972 22 21223 35666663 5577 2
Q ss_pred cEEEEEE-----ecCCCCcchHHHHHHHHhccceEEEEe
Q 006916 160 GEVIAIF-----NDDDQGRNGVTALGDKLAEIRCKISYK 193 (625)
Q Consensus 160 ~~v~ii~-----~d~~~g~~~~~~l~~~l~~~g~~v~~~ 193 (625)
+ +-|.+ -.| ......+...+...|.++...
T Consensus 168 ~-l~ia~a~~~~vGD---~rva~Sl~~~~~~~G~~v~~~ 202 (324)
T 1js1_X 168 K-VVMTWAPHPRPLP---QAVPNSFAEWMNATDYEFVIT 202 (324)
T ss_dssp E-EEEECCCCSSCCC---SHHHHHHHHHHHTSSSEEEEE
T ss_pred e-EEEEEEcccccCC---cchHHHHHHHHHHCCCEEEEe
Confidence 4 44443 223 357788888888889887754
No 255
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=40.68 E-value=67 Score=30.65 Aligned_cols=82 Identities=4% Similarity=0.035 Sum_probs=47.4
Q ss_pred cEEEEEEec---CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHH
Q 006916 160 GEVIAIFND---DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d---~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~ 236 (625)
..|+++..+ +.|.....+.+.+.+++.|..+.....-... ..+...-...++.+...+.+.||+..........++
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 122 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRP-NADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVE 122 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCT-TCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCC-ccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHH
Confidence 468888764 3555566778888888888765543111110 012333445667776677888888443332344566
Q ss_pred HHHHcC
Q 006916 237 VAQRLG 242 (625)
Q Consensus 237 ~a~~~g 242 (625)
.+.+.+
T Consensus 123 ~~~~~~ 128 (342)
T 1jx6_A 123 HVLDST 128 (342)
T ss_dssp HHHHHC
T ss_pred HHHHcC
Confidence 666555
No 256
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=40.66 E-value=1.9e+02 Score=26.36 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=24.4
Q ss_pred HHHhcCcEEEEcCCChHHHHHHHHhhhcCCCcEEe
Q 006916 86 QFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (625)
Q Consensus 86 ~l~~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 120 (625)
.+.+.++.+|+-+-++.++..+..+-+..++|+|.
T Consensus 57 ~L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvig 91 (255)
T 2jfz_A 57 FFKPHEIELLIVACNTASALALEEMQKYSKIPIVG 91 (255)
T ss_dssp HHGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEEC
T ss_pred HHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 34455898888765555544566677778999996
No 257
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=40.57 E-value=63 Score=27.64 Aligned_cols=50 Identities=22% Similarity=0.213 Sum_probs=36.8
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHh-cCCceEEEEEcch
Q 006916 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR-MMEARVIVVHGYS 228 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~-~~~~~vIvl~~~~ 228 (625)
....+.+.+++.|+++.....++.+ .+.+...+++.. ..+.|+||..+..
T Consensus 41 ng~~L~~~L~~~G~~v~~~~iV~Dd----~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred hHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 3567889999999999887777744 667777776654 3568888887543
No 258
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=40.37 E-value=2.4e+02 Score=26.58 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=78.6
Q ss_pred eEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHHH
Q 006916 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (625)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~~ 105 (625)
.-.|+.+|-..+ .+.+.+|+.|+.++ +|..+.+...++.-.-.+.+.-+.+.++.-+.+|+-=.. ...
T Consensus 39 gk~l~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~--~~~ 106 (307)
T 2i6u_A 39 PRGVAVIFDKNS---TRTRFSFELGIAQL-------GGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWRTF--GQE 106 (307)
T ss_dssp TCEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEEGGGSGGGGTCCHHHHHHHHHHHEEEEEEECS--SHH
T ss_pred CCEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCccccCCCCCCHHHHHHHHHHhCCEEEEecC--Chh
Confidence 346888887765 37899999999995 466666644443322222333333444443444442111 223
Q ss_pred HHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcC-C--cEEEEEEecCCCCcchHHHH
Q 006916 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG-W--GEVIAIFNDDDQGRNGVTAL 179 (625)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~-W--~~v~ii~~d~~~g~~~~~~l 179 (625)
.+..+++..++|+|.- .+ +...| .+++++++ +++| . .+|+++.+ . . ......+
T Consensus 107 ~~~~lA~~~~vPVINa-~~-----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD-~-~-~rva~Sl 165 (307)
T 2i6u_A 107 RLDAMASVATVPVINA-LS-----DEFHP------------CQVLADLQTIAERKGALRGLRLSYFGD-G-A-NNMAHSL 165 (307)
T ss_dssp HHHHHHHHCSSCEEES-CC-----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC-T-T-SHHHHHH
T ss_pred HHHHHHhhCCCCEEcC-CC-----CCcCc------------cHHHHHHHHHHHHhCCcCCeEEEEECC-C-C-cCcHHHH
Confidence 3455566778999972 22 22223 35666663 4555 2 47777653 2 2 3577888
Q ss_pred HHHHhccceEEEEe
Q 006916 180 GDKLAEIRCKISYK 193 (625)
Q Consensus 180 ~~~l~~~g~~v~~~ 193 (625)
...+...|.++...
T Consensus 166 ~~~~~~~g~~v~~~ 179 (307)
T 2i6u_A 166 LLGGVTAGIHVTVA 179 (307)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHHCCCEEEEE
Confidence 88888889887754
No 259
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=40.04 E-value=56 Score=30.63 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=39.5
Q ss_pred EEecCCCChHHHHHHHHHHHhc--CcEEEEcCCChHHHHHHHHhhhcCCCcEE
Q 006916 69 TMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMAHVLSHLANELQVPLL 119 (625)
Q Consensus 69 ~~~D~~~~~~~a~~~~~~l~~~--~v~aviG~~~s~~~~~va~~~~~~~iP~I 119 (625)
...|+=|+...--+.+.+-+.+ .++.|||+..|+.+.-+.++|...+.|-.
T Consensus 187 ~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty 239 (297)
T 3dnf_A 187 KVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTY 239 (297)
T ss_dssp EEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEE
T ss_pred CCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEE
Confidence 4678878777665555444443 78888999999999999999999888754
No 260
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=39.87 E-value=24 Score=32.12 Aligned_cols=74 Identities=9% Similarity=0.021 Sum_probs=51.8
Q ss_pred eeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccc---cceEecccccccceEE
Q 006916 488 HGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT---KAVDFTQPYIESGLVV 564 (625)
Q Consensus 488 ~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~~R~---~~vdfs~p~~~~~~~~ 564 (625)
+|+--+|+..+.++.|.+ +++.- +.-..++.++.+|.+|+++..-....+.. ....=..|++...+.+
T Consensus 18 ~~ll~~L~~~Fek~~gv~--V~~~~-------~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVl 88 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVK--VDVIA-------VGTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVI 88 (236)
T ss_dssp HCHHHHHHHHHHHHHTCE--EEEEE-------ECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEE
T ss_pred hHHHHHHHHHHHHHhCCe--EEEEE-------cChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEE
Confidence 467778899998888877 55544 44778999999999999977554333221 1122245888889999
Q ss_pred EEecCC
Q 006916 565 VAPVRK 570 (625)
Q Consensus 565 l~~~~~ 570 (625)
++|..+
T Consensus 89 V~P~~~ 94 (236)
T 3lr1_A 89 VGPKND 94 (236)
T ss_dssp EECTTC
T ss_pred EEECCC
Confidence 987765
No 261
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=39.60 E-value=1.7e+02 Score=24.50 Aligned_cols=85 Identities=13% Similarity=0.050 Sum_probs=55.1
Q ss_pred cEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch----hhHHHHH
Q 006916 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMVF 235 (625)
Q Consensus 160 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~----~~~~~il 235 (625)
.+|.+.....+.-..+...+...++..|++|.+-- .. .....+++.+++.++++|.+.+.. ..+..++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG---~~-----~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i 90 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTG---LR-----QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLM 90 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCC---SB-----CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECC---CC-----CCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHH
Confidence 45655555555555667888888999999987422 11 123356677777899999987653 4567777
Q ss_pred HHHHHcCCCCCCeEEEee
Q 006916 236 DVAQRLGMMDSGYVWIAT 253 (625)
Q Consensus 236 ~~a~~~g~~~~~~~~i~~ 253 (625)
+++++.+.. .-.+|+..
T Consensus 91 ~~L~~~g~~-~i~v~vGG 107 (161)
T 2yxb_A 91 AKLRELGAD-DIPVVLGG 107 (161)
T ss_dssp HHHHHTTCT-TSCEEEEE
T ss_pred HHHHhcCCC-CCEEEEeC
Confidence 777776642 23456654
No 262
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=39.26 E-value=48 Score=31.10 Aligned_cols=84 Identities=6% Similarity=-0.066 Sum_probs=51.1
Q ss_pred HHHcCCcEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhH
Q 006916 154 VSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTG 231 (625)
Q Consensus 154 l~~~~W~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~ 231 (625)
|+.-.=+.|+++..+ +.|.....+.+.+.+++.|..+.....- .+...-...++.+...+.+.||+.......
T Consensus 10 L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 84 (303)
T 3kke_A 10 LRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQID-----APPRGTQQLSRLVSEGRVDGVLLQRREDFD 84 (303)
T ss_dssp -------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECC-----STTHHHHHHHHHHHSCSSSEEEECCCTTCC
T ss_pred HhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCcEEEEecCCCCc
Confidence 334344678888864 4566677889999999999887653211 123445667788888889988886544332
Q ss_pred HHHHHHHHHcCC
Q 006916 232 LMVFDVAQRLGM 243 (625)
Q Consensus 232 ~~il~~a~~~g~ 243 (625)
...++.+.+ ++
T Consensus 85 ~~~~~~l~~-~i 95 (303)
T 3kke_A 85 DDMLAAVLE-GV 95 (303)
T ss_dssp HHHHHHHHT-TS
T ss_pred HHHHHHHhC-CC
Confidence 215556655 54
No 263
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=39.17 E-value=84 Score=29.25 Aligned_cols=79 Identities=5% Similarity=0.015 Sum_probs=49.3
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccce-EEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVF 235 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il 235 (625)
+.|+++..+ +.|.....+.+++.+++.|. .+.... .. .+...-...++.+...+.+.||+.... ......+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~--~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~ 77 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND---SQ--NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 77 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEec---CC--CCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHH
Confidence 467777753 34555677888888888886 665432 11 223444556777777788888876543 3344566
Q ss_pred HHHHHcCC
Q 006916 236 DVAQRLGM 243 (625)
Q Consensus 236 ~~a~~~g~ 243 (625)
+++.+.++
T Consensus 78 ~~~~~~~i 85 (309)
T 2fvy_A 78 EKARGQNV 85 (309)
T ss_dssp HHHHTTTC
T ss_pred HHHHHCCC
Confidence 77766553
No 264
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=38.56 E-value=82 Score=28.84 Aligned_cols=118 Identities=10% Similarity=0.012 Sum_probs=65.6
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCChHHH
Q 006916 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 104 (625)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~--~v~aviG~~~s~~~ 104 (625)
=+|+.+...... ......+++-|+++.+ ..+...+.....+...+.+.+.+++.. .+.||+... ...+
T Consensus 119 ~~i~~i~~~~~~-~~~R~~gf~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~~a 188 (280)
T 3gyb_A 119 THIAHLRVGSGA-GLRRFESFEATMRAHG--------LEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSN-DITA 188 (280)
T ss_dssp CSEEEECCSSHH-HHHHHHHHHHHHHHTT--------CCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESS-HHHH
T ss_pred CeEEEEeCCCch-HHHHHHHHHHHHHHcC--------cCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECC-hHHH
Confidence 367777665433 4566788888887742 222211234445677777888888875 588999754 3344
Q ss_pred HHHHHhhhcCC------CcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHH
Q 006916 105 HVLSHLANELQ------VPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY 156 (625)
Q Consensus 105 ~~va~~~~~~~------iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~ 156 (625)
..+...+...+ +.++++.... +.....|.+.....+...++...+++|..
T Consensus 189 ~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~av~~l~~ 244 (280)
T 3gyb_A 189 IGALGAARELGLRVPEDLSIIGYDNTP--LAQTRLINLTTIDDNSIGVGYNAALLLLS 244 (280)
T ss_dssp HHHHHHHHHHTCCTTTTCEEEEESCCH--HHHSTTTCCCEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCeeEEEEECCch--HhhccCCCceEEecCHHHHHHHHHHHHHH
Confidence 44444444433 3466664332 22222344444445556666666665543
No 265
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=38.11 E-value=43 Score=33.91 Aligned_cols=96 Identities=8% Similarity=0.025 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006916 149 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 149 al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
.+.++++.+|-+++.||++..... ...+.+.+.+++.|+.+.+. .+... ...+.+....+.+++ +.++||-.+.+
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~~-~~~ge--~~~~~v~~~~~~~~~-~~D~IIAvGGG 155 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTKL-VFGGE--ASLVELDKLRKQCPD-DTQVIIGVGGG 155 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEEE-EECSC--CCHHHHHHHHTTSCT-TCCEEEEEESH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEEE-eeCCC--CCHHHHHHHHHHHhh-CCCEEEEeCCc
Confidence 356677778866998888654332 35788888888888877432 23332 335567777777777 88988876654
Q ss_pred --hhHHHHHHHHHHcCCCCCCeEEEeeC
Q 006916 229 --RTGLMVFDVAQRLGMMDSGYVWIATT 254 (625)
Q Consensus 229 --~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (625)
-++..++.. ..+ ..++-|-+.
T Consensus 156 SviD~AK~iA~--~~g---iP~I~IPTT 178 (450)
T 1ta9_A 156 KTMDSAKYIAH--SMN---LPSIICPTT 178 (450)
T ss_dssp HHHHHHHHHHH--HTT---CCEEEEESS
T ss_pred HHHHHHHHHHH--hcC---CCEEEEeCC
Confidence 344444432 223 345555554
No 266
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=38.04 E-value=67 Score=30.19 Aligned_cols=79 Identities=8% Similarity=-0.040 Sum_probs=47.5
Q ss_pred EEEEEEecCC-CCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHHHH
Q 006916 161 EVIAIFNDDD-QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFDVA 238 (625)
Q Consensus 161 ~v~ii~~d~~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~~a 238 (625)
+|+++..+.. |.....+.+++.+++.|..+.... +.. .+.......++.+...+.+.||+.... ......++.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQK--EDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKA 78 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSS--SCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 5677765322 555667778888888888776432 111 223444556777766788888875433 3334566677
Q ss_pred HHcCC
Q 006916 239 QRLGM 243 (625)
Q Consensus 239 ~~~g~ 243 (625)
.+.++
T Consensus 79 ~~~~i 83 (313)
T 2h3h_A 79 LEMGI 83 (313)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 66653
No 267
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=37.44 E-value=1.5e+02 Score=27.97 Aligned_cols=131 Identities=14% Similarity=0.177 Sum_probs=76.4
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE--cCCChHHH
Q 006916 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV--GPQSAVMA 104 (625)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~avi--G~~~s~~~ 104 (625)
-.++.+|...+ .+.+.+|+.|+.++ +|..+.+...++.-.-.+.+.-+.+.++.-+.+|+ .+. .
T Consensus 46 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~----~ 111 (309)
T 4f2g_A 46 RTLAMIFEKSS---TRTRLSFEAGIFQL-------GGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFE----Q 111 (309)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECCSSCEETBEECHHHHHHHHHHHCSEEEEECSC----H
T ss_pred ceEEEEecCCC---hhhHhhHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC----H
Confidence 46888988765 47899999999995 45555543333222212223333333433244444 332 2
Q ss_pred HHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcC---CcEEEEEEecCCCCcchHHH
Q 006916 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTA 178 (625)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~---W~~v~ii~~d~~~g~~~~~~ 178 (625)
..+..+++..++|+|.-+ ++ ...| .+++++++ +++| -.+|+++.+ +......
T Consensus 112 ~~~~~lA~~~~vPVINag-~~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vGD----~~~va~S 169 (309)
T 4f2g_A 112 DIIQRFAENSRVPVINGL-TN-----EYHP------------CQVLADIFTYYEHRGPIRGKTVAWVGD----ANNMLYT 169 (309)
T ss_dssp HHHHHHHHTCSSCEEEEE-CS-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC----CCHHHHH
T ss_pred HHHHHHHHhCCCCEEECC-CC-----ccCc------------HHHHHHHHHHHHHhCCCCCCEEEEECC----CcchHHH
Confidence 344556677789999854 22 1222 35666663 4554 467887753 2357788
Q ss_pred HHHHHhccceEEEEe
Q 006916 179 LGDKLAEIRCKISYK 193 (625)
Q Consensus 179 l~~~l~~~g~~v~~~ 193 (625)
+...+...|.++...
T Consensus 170 l~~~~~~~G~~v~~~ 184 (309)
T 4f2g_A 170 WIQAARILDFKLQLS 184 (309)
T ss_dssp HHHHHHHHTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 888888888877653
No 268
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=37.14 E-value=80 Score=26.65 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=42.7
Q ss_pred cEEEEEEecCCC--C---cchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006916 160 GEVIAIFNDDDQ--G---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 160 ~~v~ii~~d~~~--g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
-+++||...|+- | ......+...+++.|.++.....++ .+ +.+...+++..+.++|+||..+..
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~----Dd-~~i~~al~~a~~~~~DlVittGG~ 76 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA----DG-SPVGEALRKAIDDDVDVILTSGGT 76 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC----SS-HHHHHHHHHHHHTTCSEEEEESCC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC----CH-HHHHHHHHHHHhCCCCEEEECCCC
Confidence 467777654421 2 2356778888999999887665554 34 667777777655568999887543
No 269
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=36.49 E-value=67 Score=29.76 Aligned_cols=78 Identities=15% Similarity=-0.024 Sum_probs=49.3
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~ 237 (625)
+.|+++..+ +.|.....+.+++.+++.|..+.... .. .+...-...++.+...+.+.||+...... ...++.
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~ 90 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSN---SD--QNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAE 90 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CC--CCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHH
Confidence 478888864 44555677888888889998876432 11 22444456677777788898887653222 234555
Q ss_pred HHHcCC
Q 006916 238 AQRLGM 243 (625)
Q Consensus 238 a~~~g~ 243 (625)
+.+.++
T Consensus 91 l~~~~i 96 (289)
T 2fep_A 91 FKRSPV 96 (289)
T ss_dssp HHHSSS
T ss_pred HHhcCC
Confidence 555553
No 270
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=36.28 E-value=83 Score=26.86 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=36.9
Q ss_pred EEEEEEecCC--CC---cchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 006916 161 EVIAIFNDDD--QG---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (625)
Q Consensus 161 ~v~ii~~d~~--~g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 226 (625)
+++||...|+ .| ......+.+.+++.|+.+.....++.. .+.+...+++..+ +.|+||..+
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd----~~~I~~~l~~a~~-~~DlVittG 70 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDD----LDEIGWAFRVALE-VSDLVVSSG 70 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHH-HCSEEEEES
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHh-cCCEEEEcC
Confidence 4566654332 12 134566777778888887776666643 6666666666543 267777654
No 271
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=36.14 E-value=43 Score=33.36 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=51.3
Q ss_pred HHHHHHHcCCcEEEEEEecCCCCc-chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006916 150 IAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 150 l~~ll~~~~W~~v~ii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
+.++++ +| +++.||+++..... ...+.+.+.++ |+++.....+.+. .+.+.+...++.+++.++++||-.+.+
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGGG 116 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPN--PAYETLMNAVKLVREQKVTFLLAVGGG 116 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSS--CBHHHHHHHHHHHHHHTCCEEEEEESH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCC--cCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 455566 67 89988885432222 24667777776 6665422222222 457778888888888899999877654
Q ss_pred --hhHHHHHHHH
Q 006916 229 --RTGLMVFDVA 238 (625)
Q Consensus 229 --~~~~~il~~a 238 (625)
-++..++...
T Consensus 117 sviD~AK~iA~~ 128 (408)
T 1oj7_A 117 SVLDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 3455555443
No 272
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=36.10 E-value=18 Score=32.24 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=26.3
Q ss_pred cEEEEcCCChHHHHHHHHhhhcCCCcEEeec
Q 006916 92 TLAIVGPQSAVMAHVLSHLANELQVPLLSFT 122 (625)
Q Consensus 92 v~aviG~~~s~~~~~va~~~~~~~iP~Is~~ 122 (625)
+..++||..|.=......+++.+++|+||.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 4678999999877777889999999999853
No 273
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=36.01 E-value=76 Score=27.29 Aligned_cols=81 Identities=11% Similarity=0.142 Sum_probs=54.2
Q ss_pred ceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHC-CCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 462 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
++|+||+... + ...+-.+++..+.+.. +.+ +++.. +....+...|.+|++|+++..
T Consensus 4 g~l~Ig~~~~--~------------~~~~l~~~l~~~~~~~P~i~--i~i~~-------~~~~~~~~~l~~g~~Dl~i~~ 60 (219)
T 3jv9_A 4 GAFKLGLIFT--V------------APYLLPKLIVSLRRTAPKMP--LMLEE-------NYTHTLTESLKRGDVDAIIVA 60 (219)
T ss_dssp CCEEEEEETT--T------------HHHHHHHHHHHHHHHSTTCC--EEEEE-------ECHHHHHHHHHHTSSSEEEEE
T ss_pred CcEEEEEcch--h------------hHHHHHHHHHHHHHHCCCcE--EEEEe-------CCcHHHHHHHHcCCCCEEEEc
Confidence 5688888521 1 1234457788887766 344 77766 458899999999999999875
Q ss_pred eeeecccccceEecccccccceEEEEecC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVR 569 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~ 569 (625)
... ....+.+ .|+....+.+++++.
T Consensus 61 ~~~---~~~~~~~-~~l~~~~~~~v~~~~ 85 (219)
T 3jv9_A 61 EPF---QEPGIVT-EPLYDEPFFVIVPKG 85 (219)
T ss_dssp SSC---CCTTEEE-EEEEEEEEEEEEETT
T ss_pred CCC---CCCCeeE-EEeeeceEEEEEeCC
Confidence 432 2233433 467777888888754
No 274
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=35.91 E-value=3.6e+02 Score=27.29 Aligned_cols=145 Identities=14% Similarity=0.033 Sum_probs=84.8
Q ss_pred ChHHHHHHHHHHHhcCcEEEEc-CCC-hHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHH
Q 006916 76 NGFLSIMGALQFMETDTLAIVG-PQS-AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM 153 (625)
Q Consensus 76 ~~~~a~~~~~~l~~~~v~aviG-~~~-s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~l 153 (625)
.+..+...+.+....|+.+||= ... -..-..+..++..+++.+|.|.| ....... +......
T Consensus 45 Pa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rliGPNc--G~~~~~~----~~~~f~~---------- 108 (480)
T 3dmy_A 45 AGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDC--GTSMIAG----TPLAFAN---------- 108 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEECSSC--CEEEETT----EEEESCC----------
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCc--cccccCC----ccccccC----------
Confidence 4556666777777776665442 111 22334567788889999998766 2211111 1111110
Q ss_pred HHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCC---CChhHHHHHHHHHhc-CCceEEEEEcch-
Q 006916 154 VSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQS---VTETDVRNELVKVRM-MEARVIVVHGYS- 228 (625)
Q Consensus 154 l~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~---~~~~~~~~~l~~i~~-~~~~vIvl~~~~- 228 (625)
.+.--+|++|.+... ....+...+.+.|+-+.....+-.... ....++.+.++.+.+ .++++|+++...
T Consensus 109 --~~~~G~vaivSqSGa----l~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~ 182 (480)
T 3dmy_A 109 --VMPEGNIGVIGASGT----GIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPP 182 (480)
T ss_dssp --CCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCC
T ss_pred --CCCCCCEEEEeccHH----HHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecC
Confidence 012357998876543 455666777777776665444432200 035568888888765 577899998853
Q ss_pred --hhHHHHHHHHHHcC
Q 006916 229 --RTGLMVFDVAQRLG 242 (625)
Q Consensus 229 --~~~~~il~~a~~~g 242 (625)
...+.|++.+++.+
T Consensus 183 ~e~~~~~f~~~ar~~~ 198 (480)
T 3dmy_A 183 AEAVRLKIVNAMKATG 198 (480)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHhCC
Confidence 33478888887643
No 275
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=35.27 E-value=53 Score=27.95 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhcc-ceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEE
Q 006916 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV 224 (625)
Q Consensus 146 ~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl 224 (625)
.++......++++-+++.++ +|........+.+.+.+.-. |+++.. ++ .++....+++-+ .+.+++++
T Consensus 19 HGQVat~W~k~~~~~~IiVv-nD~vA~D~~~k~~lkmA~P~~gvk~~i---~s------ve~ai~~~~~~~-~~~~v~il 87 (168)
T 3eye_A 19 HGQVGVTWTSTIGANLLVVV-DDVVANDDIQQKLMGITAETYGFGIRF---FT------IEKTINVIGKAA-PHQKIFLI 87 (168)
T ss_dssp TTHHHHHHHHHHTCSEEEEE-CHHHHHSGGGGHHHHHHHHHHTCEEEE---EC------HHHHHHHGGGCC-TTCCEEEE
T ss_pred chhhhheeccccCCCEEEEE-cccccCCHHHHHHHHhcCCCCCCeEEE---EE------HHHHHHHHhccc-CCceEEEE
Confidence 36788899999999999655 44433334566666666666 887753 22 334434444333 56789999
Q ss_pred EcchhhHHHHHH
Q 006916 225 HGYSRTGLMVFD 236 (625)
Q Consensus 225 ~~~~~~~~~il~ 236 (625)
+-++.++..+++
T Consensus 88 ~k~p~d~~~lve 99 (168)
T 3eye_A 88 CRTPQTVRKLVE 99 (168)
T ss_dssp ESSHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 999998887754
No 276
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=35.19 E-value=28 Score=32.83 Aligned_cols=73 Identities=11% Similarity=0.238 Sum_probs=48.3
Q ss_pred eeeHHHHHHHHHH---C---CCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccc--cceEec-c-ccc
Q 006916 489 GYCIDVFLAAVRL---L---PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT--KAVDFT-Q-PYI 558 (625)
Q Consensus 489 G~~idl~~~~~~~---l---~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~~R~--~~vdfs-~-p~~ 558 (625)
.+-.++++.+.++ . +.+ +++.. ++...++.+|.+|++|+++..-....+.. +.+.+. . |+.
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~v~--v~l~~-------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~ 103 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAPFK--VAWYK-------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAF 103 (294)
T ss_dssp THHHHHHHHHHHHHHSCC---CE--EEEEE-------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEE
T ss_pred HHHHHHHHHHHhhhcccCCCCeE--EEEEe-------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEE
Confidence 4556888899888 7 555 77776 66899999999999999976432211110 111222 4 777
Q ss_pred ccceEEEEecCC
Q 006916 559 ESGLVVVAPVRK 570 (625)
Q Consensus 559 ~~~~~~l~~~~~ 570 (625)
...+.++++...
T Consensus 104 ~d~lvlv~~~~h 115 (294)
T 3cvg_A 104 RDHFMLIGPPSN 115 (294)
T ss_dssp EEEEEEEECTTC
T ss_pred eccEEEEecCCC
Confidence 778888887643
No 277
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=35.02 E-value=1.3e+02 Score=26.39 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=53.8
Q ss_pred cEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch----hhHHHHH
Q 006916 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMVF 235 (625)
Q Consensus 160 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~----~~~~~il 235 (625)
.+|.+.....+.-.-+...+...++..|+++.+-- .. ... ...++.+++.++++|.+.+.. ..+..++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG---~~--vp~---~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i 160 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLG---VD--IEP---GKFVEAVKKYQPDIVGMSALLTTTMMNMKSTI 160 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECC---SS--BCH---HHHHHHHHHHCCSEEEEECCSGGGTHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECC---CC--CCH---HHHHHHHHHcCCCEEEEeccccccHHHHHHHH
Confidence 46666666656556677888889999999987422 11 123 345555666689999987643 3567777
Q ss_pred HHHHHcCCCCCCeEEEe
Q 006916 236 DVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 236 ~~a~~~g~~~~~~~~i~ 252 (625)
+..++.+....-.+++.
T Consensus 161 ~~l~~~~~~~~~~v~vG 177 (210)
T 1y80_A 161 DALIAAGLRDRVKVIVG 177 (210)
T ss_dssp HHHHHTTCGGGCEEEEE
T ss_pred HHHHhcCCCCCCeEEEE
Confidence 77777664322344544
No 278
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=35.01 E-value=1e+02 Score=27.08 Aligned_cols=83 Identities=11% Similarity=0.205 Sum_probs=53.8
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+||+.. . -...+-..++..+.+... .+++++.. ++...++..|.+|++|+++..
T Consensus 29 ~g~l~Ig~~~--~------------~~~~~l~~~l~~f~~~~P-~v~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 86 (238)
T 2hxr_A 29 RGSLRIAVTP--T------------FTSYFIGPLMADFYARYP-SITLQLQE-------MSQEKIEDMLCRDELDVGIAF 86 (238)
T ss_dssp --CEEEEECH--H------------HHTTTHHHHHHHHHHHCT-TSCEEEEE-------CCHHHHHHHHHTTSCSEEEEE
T ss_pred CCeEEEeech--h------------hHHHHHHHHHHHHHHhCC-CcEEEEEE-------CCHHHHHHHHHcCCCcEEEEc
Confidence 3578999842 1 112445677888888774 34477776 558889999999999999864
Q ss_pred eeeecccccceEecccccccceEEEEecC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVR 569 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~ 569 (625)
... ....+.+ .+.....+.++++..
T Consensus 87 ~~~---~~~~l~~-~~l~~~~~~~v~~~~ 111 (238)
T 2hxr_A 87 APV---HSPELEA-IPLLTESLALVVAQH 111 (238)
T ss_dssp SSC---CCTTEEE-EEEEEEEEEEEEETT
T ss_pred CCC---Cccccee-eeeccCcEEEEEcCC
Confidence 321 2233433 467777788887654
No 279
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=34.95 E-value=1.5e+02 Score=28.12 Aligned_cols=78 Identities=9% Similarity=0.059 Sum_probs=51.0
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~ 237 (625)
+.|+++..+ +.|.....+.+.+.+++.|..+.... .. .+.......++.+...+.+.||+....... ..++.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~----~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~ 142 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGV-TD----YLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAM 142 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEE-CT----TCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEe-CC----CCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHH
Confidence 468888764 45666778889999999998876432 11 224445567777777888988886543222 45566
Q ss_pred HHHcCC
Q 006916 238 AQRLGM 243 (625)
Q Consensus 238 a~~~g~ 243 (625)
+.+.++
T Consensus 143 l~~~~i 148 (344)
T 3kjx_A 143 LDAAGI 148 (344)
T ss_dssp HHHCSS
T ss_pred HHhCCC
Confidence 666553
No 280
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=34.94 E-value=77 Score=29.75 Aligned_cols=70 Identities=16% Similarity=0.055 Sum_probs=43.3
Q ss_pred HHHHHHHHH-CCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeec-c------------cccceEeccccc
Q 006916 493 DVFLAAVRL-LPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVT-N------------RTKAVDFTQPYI 558 (625)
Q Consensus 493 dl~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~-~------------R~~~vdfs~p~~ 558 (625)
.+.+.+.++ .|.+ +++.+. +....++..|.+|++|+++....... . +.+.+.+..++.
T Consensus 38 ~la~~~~~~~~g~~--v~v~~~------~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 109 (314)
T 1us5_A 38 GIAKLVNDANVGIR--ANARST------GGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAALY 109 (314)
T ss_dssp HHHHHHHHHTSSEE--EEEECC------SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEEEE
T ss_pred HHHHHHHhcCCCce--EEEEec------CcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchhehhhcC
Confidence 345555553 5655 666542 44778999999999999876543211 0 123444444666
Q ss_pred ccceEEEEecCC
Q 006916 559 ESGLVVVAPVRK 570 (625)
Q Consensus 559 ~~~~~~l~~~~~ 570 (625)
.....++++...
T Consensus 110 ~~~~~lvv~~~~ 121 (314)
T 1us5_A 110 PEVVHVVARKDA 121 (314)
T ss_dssp EEEEEEEEETTS
T ss_pred cceEEEEEECCC
Confidence 677788887643
No 281
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=34.91 E-value=45 Score=28.91 Aligned_cols=81 Identities=14% Similarity=0.083 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEE
Q 006916 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 225 (625)
Q Consensus 146 ~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~ 225 (625)
.++......++++-+++.++ +|........+.+.+.+...|+++.. ++ .++....+++-+..+.++++++
T Consensus 35 HGQVat~W~k~~~~~~IiVv-nD~vA~D~~~k~~lkmA~P~gvk~~i---~s------ve~ai~~~~~~~~~~~~v~il~ 104 (187)
T 3lfj_A 35 HGQVMTRWMKGFPEASIVII-DDELAVDEFMKNIYTMAAPPGVKVKV---FG------VDAALKEWSQKTSVEEKVFLLF 104 (187)
T ss_dssp CTTHHHHHHTTCTTCEEEEE-CHHHHHCHHHHHHHHHTSCTTCCEEE---EC------HHHHHHHHHSBCSSCEEEEEEE
T ss_pred hhhhhheeccccCCCEEEEE-CccccCCHHHHHHHHHhccCCCeEEE---EE------HHHHHHHHhCCccCCceEEEEE
Confidence 36788899999999999654 45443344566666666666777653 22 3344444444333567899999
Q ss_pred cchhhHHHHHH
Q 006916 226 GYSRTGLMVFD 236 (625)
Q Consensus 226 ~~~~~~~~il~ 236 (625)
-++.++..+++
T Consensus 105 k~p~d~~~lve 115 (187)
T 3lfj_A 105 KNIDTCKRVMD 115 (187)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99998887754
No 282
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=34.59 E-value=2.3e+02 Score=27.50 Aligned_cols=133 Identities=18% Similarity=0.100 Sum_probs=75.4
Q ss_pred eEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE--cCCChHH
Q 006916 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV--GPQSAVM 103 (625)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~avi--G~~~s~~ 103 (625)
.-.|+.+|...+ .+.+.+|+.|+.++ +|..+.+...++.-.-.+.+.-+.+.++.-+.+|+ ++. .
T Consensus 71 GK~va~lF~e~S---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~-~-- 137 (365)
T 4amu_A 71 GKNIAILFQKDS---TRTRCAFEVAASDL-------GAGVTYIGPSGSNMGKKESIEDTAKVLGRFYDGIEFRGFA-Q-- 137 (365)
T ss_dssp TCEEEEEESSCC---HHHHHHHHHHHHHH-------TCEEEEECHHHHCCSSSSCHHHHHHHHHHHCSEEEEECSC-H--
T ss_pred CceEEEEecCCC---chHHHHHHHHHHhC-------CCEEEEcCCccccCCCCcCHHHHHHHHHhhCcEEEEecCC-h--
Confidence 357888998765 47899999999997 34555443233332222223333333333233333 332 2
Q ss_pred HHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcC---CcEEEEEEecCCCCcchHH
Q 006916 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVT 177 (625)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~---W~~v~ii~~d~~~g~~~~~ 177 (625)
..+..+++..++|+|.-+ + +...| .+++++++ +++| -.+|+++. |... ....
T Consensus 138 -~~~~~lA~~s~vPVINa~-~-----~~~HP------------tQaLaDl~Ti~E~~G~l~glkva~vG-D~~n--nva~ 195 (365)
T 4amu_A 138 -SDVDALVKYSGVPVWNGL-T-----DDEHP------------TQIIADFMTMKEKFGNLKNKKIVFIG-DYKN--NVGV 195 (365)
T ss_dssp -HHHHHHHHHHCSCEEEEE-C-----SSCCH------------HHHHHHHHHHHHHHSSCTTCEEEEES-STTS--HHHH
T ss_pred -hHHHHHHHhCCCCEEeCC-C-----CCCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC-CCCc--chHH
Confidence 234455566689999743 2 21222 25666663 4565 36777665 3222 4677
Q ss_pred HHHHHHhccceEEEEe
Q 006916 178 ALGDKLAEIRCKISYK 193 (625)
Q Consensus 178 ~l~~~l~~~g~~v~~~ 193 (625)
.+...+...|.++...
T Consensus 196 Sl~~~~~~lG~~v~~~ 211 (365)
T 4amu_A 196 STMIGAAFNGMHVVMC 211 (365)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 8888888889887653
No 283
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=34.53 E-value=15 Score=32.97 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=27.2
Q ss_pred CcEEEEcCCChHHHHHHHHhhhcCCCcEEee
Q 006916 91 DTLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (625)
Q Consensus 91 ~v~aviG~~~s~~~~~va~~~~~~~iP~Is~ 121 (625)
+++.++||..|.=......+++.+++|+||.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 6888999999987777788999999999974
No 284
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=34.45 E-value=1.9e+02 Score=27.33 Aligned_cols=135 Identities=15% Similarity=0.197 Sum_probs=75.3
Q ss_pred eEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEE-ecCCCChHHHHHHHHHHHhc--CcEEEEcCCChH
Q 006916 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITM-HDAKFNGFLSIMGALQFMET--DTLAIVGPQSAV 102 (625)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~-~D~~~~~~~a~~~~~~l~~~--~v~aviG~~~s~ 102 (625)
.-.|+.+|...+ .+.+.+|+.|+.++ +|..+.+.. .++.-.-.+.+.-+.+.++. .++++=.+. ..
T Consensus 40 gk~la~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~-~~ 108 (306)
T 4ekn_B 40 GKILATVFYEPS---TRTRLSFETAMKRL-------GGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPS-EG 108 (306)
T ss_dssp TCEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECCCTTTTSSSSCCHHHHHHHHHHHCSEEEEECSS-TT
T ss_pred CceEEEEEcCCC---hhHHhhHHHHHHHc-------CCEEEEcCCcccccCCCCCCHHHHHHHHHHhCcEEEEEcCC-hH
Confidence 346888988765 47899999999995 455555533 33332212223333333333 333333333 22
Q ss_pred HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcC---CcEEEEEEecCCCCcchH
Q 006916 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGV 176 (625)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~---W~~v~ii~~d~~~g~~~~ 176 (625)
.+..+++...+|+|.-+.++ ...| .+++++++ +++| -.+|+++. |-.++ ...
T Consensus 109 ---~~~~lA~~~~vPVINag~g~-----~~HP------------tQ~LaDl~Ti~e~~g~l~glkva~vG-D~~~~-rva 166 (306)
T 4ekn_B 109 ---AARLASEYSQVPIINAGDGS-----NQHP------------TQTLLDLYTIMREIGRIDGIKIAFVG-DLKYG-RTV 166 (306)
T ss_dssp ---HHHHHHHHCSSCEEESCSSS-----SCCH------------HHHHHHHHHHHHHHSCSTTCEEEEES-CTTTC-HHH
T ss_pred ---HHHHHHHhCCCCEEeCCCCC-----CcCc------------HHHHHHHHHHHHHhCCcCCCEEEEEc-CCCCC-cHH
Confidence 23445566789999732211 1222 35666663 4554 45777765 33233 366
Q ss_pred HHHHHHHhcc-ceEEEEe
Q 006916 177 TALGDKLAEI-RCKISYK 193 (625)
Q Consensus 177 ~~l~~~l~~~-g~~v~~~ 193 (625)
..+...+... |.++...
T Consensus 167 ~Sl~~~~~~~~G~~v~~~ 184 (306)
T 4ekn_B 167 HSLVYALSLFENVEMYFV 184 (306)
T ss_dssp HHHHHHHHTSSSCEEEEE
T ss_pred HHHHHHHHhcCCCEEEEE
Confidence 7777788888 8877653
No 285
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=33.96 E-value=49 Score=28.00 Aligned_cols=79 Identities=10% Similarity=0.072 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 006916 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (625)
Q Consensus 147 ~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 226 (625)
++......++++-+++.++ +|........+.+.+.....|+++.. ++ .++....+++-+..+.++++++-
T Consensus 16 GQV~t~W~~~~~~~~IiVv-nD~vA~D~~~k~~lk~a~P~gvk~~i---~s------ve~ai~~~~~~~~~~~~v~ll~k 85 (163)
T 1ble_A 16 GQILTRWIKVHAADRIIVV-SDDIAQDEMRKTLILSVAPSNVKASA---VS------VSKMAKAFHSPRYEGVTAMLLFE 85 (163)
T ss_dssp TTHHHHHHHHHTCSEEEEE-CHHHHHCHHHHHHHHTSSCTTSEEEE---EC------HHHHHHHHHCSTTTTCEEEEEES
T ss_pred hhheeeeccccCCCEEEEe-CccccCCHHHHHHHHhhCCCCCeEEE---EE------HHHHHHHHhcccCCCceEEEEEC
Confidence 5677888999999999655 44443334555566665566777653 22 34444555544446678999999
Q ss_pred chhhHHHHH
Q 006916 227 YSRTGLMVF 235 (625)
Q Consensus 227 ~~~~~~~il 235 (625)
++.++..++
T Consensus 86 ~p~d~~~lv 94 (163)
T 1ble_A 86 NPSDIVSLI 94 (163)
T ss_dssp SSHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999888765
No 286
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=33.96 E-value=1.1e+02 Score=29.12 Aligned_cols=84 Identities=7% Similarity=0.014 Sum_probs=52.6
Q ss_pred HHHcCCcEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhH
Q 006916 154 VSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTG 231 (625)
Q Consensus 154 l~~~~W~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~ 231 (625)
++.-.-+.|+++..+ +.|.....+.+.+.+++.|..+.... . . .+...-...++.+...+.+.||+.......
T Consensus 57 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~--~--~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~ 131 (339)
T 3h5o_A 57 LASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGN-S--H--YDAGQELQLLRAYLQHRPDGVLITGLSHAE 131 (339)
T ss_dssp ------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEE-C--T--TCHHHHHHHHHHHHTTCCSEEEEECSCCCT
T ss_pred hhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe-C--C--CChHHHHHHHHHHHcCCCCEEEEeCCCCCH
Confidence 333344679988864 45667788999999999998876432 1 1 234455667788888889988886543222
Q ss_pred HHHHHHHHHcCC
Q 006916 232 LMVFDVAQRLGM 243 (625)
Q Consensus 232 ~~il~~a~~~g~ 243 (625)
..++.+.+.++
T Consensus 132 -~~~~~l~~~~i 142 (339)
T 3h5o_A 132 -PFERILSQHAL 142 (339)
T ss_dssp -THHHHHHHTTC
T ss_pred -HHHHHHhcCCC
Confidence 45555666553
No 287
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=33.92 E-value=62 Score=29.65 Aligned_cols=76 Identities=5% Similarity=-0.012 Sum_probs=49.5
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHH-
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD- 236 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~- 236 (625)
+.|+++..+ +.|.....+.+.+.+++.|..+..... . .+...-...++.+...+.+.||+.... ...++
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~~ 80 (277)
T 3e61_A 9 KLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS---D--NDIKKAQGYLATFVSHNCTGMISTAFN---ENIIEN 80 (277)
T ss_dssp -CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHHH
Confidence 568888864 445667788888899999988764321 1 224455667777877889988887633 23355
Q ss_pred HHHHcCC
Q 006916 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~g~ 243 (625)
.+.+.|+
T Consensus 81 ~l~~~~i 87 (277)
T 3e61_A 81 TLTDHHI 87 (277)
T ss_dssp HHHHC-C
T ss_pred HHHcCCC
Confidence 6666554
No 288
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=33.89 E-value=3e+02 Score=25.90 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=77.0
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEec-CCCChHHHHHHHHHHHhcCcEEEE--cCCChHH
Q 006916 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHD-AKFNGFLSIMGALQFMETDTLAIV--GPQSAVM 103 (625)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D-~~~~~~~a~~~~~~l~~~~v~avi--G~~~s~~ 103 (625)
-.++.+|-..+ .+.+.+|+.|+.++ +|..+.+...+ +.-.-.+.+.-+.+.++.-+.+|+ .+. ..
T Consensus 45 k~l~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~~s~~~kgEsl~DTarvls~~~D~iviR~~~-~~- 112 (308)
T 1ml4_A 45 KILATLFFEPS---TRTRLSFESAMHRL-------GGAVIGFAEASTSSVKKGESLRDTIKTVEQYCDVIVIRHPK-EG- 112 (308)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEESCGGGSGGGGTCCHHHHHHHHTTTCSEEEEEESS-TT-
T ss_pred CEEEEEecCCC---chHHHHHHHHHHHh-------CCeEEEeCCCccccccCCCCHHHHHHHHHHhCcEEEEecCC-hh-
Confidence 46788888765 37889999999985 45555554333 221122334444455555344444 332 22
Q ss_pred HHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcCC---cEEEEEEecCCCCcchHH
Q 006916 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFGW---GEVIAIFNDDDQGRNGVT 177 (625)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~W---~~v~ii~~d~~~g~~~~~ 177 (625)
.+..+++..++|+|.-+..+ ...| .+++++++ +++|- .+|+++. |-.++ ....
T Consensus 113 --~~~~la~~~~vPVINag~g~-----~~HP------------tQ~LaDl~Ti~e~~g~l~gl~va~vG-D~~~~-rva~ 171 (308)
T 1ml4_A 113 --AARLAAEVAEVPVINAGDGS-----NQHP------------TQTLLDLYTIKKEFGRIDGLKIGLLG-DLKYG-RTVH 171 (308)
T ss_dssp --HHHHHHHTCSSCEEEEEETT-----SCCH------------HHHHHHHHHHHHHSSCSSSEEEEEES-CTTTC-HHHH
T ss_pred --HHHHHHHhCCCCEEeCccCC-----ccCc------------HHHHHHHHHHHHHhCCCCCeEEEEeC-CCCcC-chHH
Confidence 23445566789999743322 1122 35666664 55662 4666654 32222 4677
Q ss_pred HHHHHHhccceEEEEe
Q 006916 178 ALGDKLAEIRCKISYK 193 (625)
Q Consensus 178 ~l~~~l~~~g~~v~~~ 193 (625)
.+...+...|.++...
T Consensus 172 Sl~~~~~~~G~~v~~~ 187 (308)
T 1ml4_A 172 SLAEALTFYDVELYLI 187 (308)
T ss_dssp HHHHHGGGSCEEEEEE
T ss_pred HHHHHHHHCCCEEEEE
Confidence 8888888889887653
No 289
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=33.72 E-value=36 Score=30.97 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=50.5
Q ss_pred eeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccc---cceEecccccccceEE
Q 006916 488 HGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT---KAVDFTQPYIESGLVV 564 (625)
Q Consensus 488 ~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~~R~---~~vdfs~p~~~~~~~~ 564 (625)
.|+--+|+..+.++.|.+ +++.- +.-..++.++.+|.+|+.+..-....+.. ....=..|++.-.+.+
T Consensus 18 ~~ll~~L~~~Fek~~gv~--V~~~~-------~gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVl 88 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYK--VDVIA-------AGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVI 88 (237)
T ss_dssp HTHHHHHHHHHHHHHCCE--EEEEE-------ECHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCce--EEEEE-------cChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEE
Confidence 466678889998888877 55544 33678899999999999976544332221 1112246788888888
Q ss_pred EEecCC
Q 006916 565 VAPVRK 570 (625)
Q Consensus 565 l~~~~~ 570 (625)
++|..+
T Consensus 89 V~P~~~ 94 (237)
T 3muq_A 89 VGPKAD 94 (237)
T ss_dssp EECTTC
T ss_pred EEeCCC
Confidence 887654
No 290
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=33.34 E-value=1.2e+02 Score=27.93 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=36.9
Q ss_pred CCCcEEEEEEecCC------CChHHHH----HHHHHHHhcCcEEEEcCCChHHHHHHHHhhhcC-CCcEEe
Q 006916 61 LGGRKLSITMHDAK------FNGFLSI----MGALQFMETDTLAIVGPQSAVMAHVLSHLANEL-QVPLLS 120 (625)
Q Consensus 61 L~g~~l~~~~~D~~------~~~~~a~----~~~~~l~~~~v~aviG~~~s~~~~~va~~~~~~-~iP~Is 120 (625)
+|+..+.+ +.|+. .+..... +.+..|.+.|+.+|+-+-++.++.++..+-+.+ ++|+|.
T Consensus 30 lp~~~~iy-~~D~a~~PYG~~~~~~i~~~~~~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 30 LPNEDIIY-FGDIARIPYGTKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp CTTCCEEE-EECTTTCCCTTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred CCCCcEEE-ecCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 46777766 44552 1233322 333344556999999876666655667777777 899997
No 291
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=33.19 E-value=99 Score=28.37 Aligned_cols=83 Identities=10% Similarity=0.066 Sum_probs=54.2
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+||+... + ...+-.+++..+.+... .+++++.. ++...++..|.+|++|+++..
T Consensus 90 ~g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 147 (294)
T 1ixc_A 90 VGELSVAYFGT--P------------IYRSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSR 147 (294)
T ss_dssp CEEEEEEECSG--G------------GGTHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred CceEEEEEccc--h------------hHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 46799998421 1 12445677888887764 34467766 457789999999999999864
Q ss_pred eeeecccccceEecccccccceEEEEecC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVR 569 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~ 569 (625)
... ....+.+ .|.....+.++++..
T Consensus 148 ~~~---~~~~l~~-~~l~~~~~~~v~~~~ 172 (294)
T 1ixc_A 148 FFP---RHPGIEI-VNIAQEDLYLAVHRS 172 (294)
T ss_dssp CCC---CCTTEEE-EEEEEEEEEEEEEGG
T ss_pred cCC---CCCCceE-EEEeeccEEEEEeCC
Confidence 332 2233333 466777777777643
No 292
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=33.02 E-value=1.6e+02 Score=22.75 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=37.0
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch--hhHHHHHHHHHHcC
Q 006916 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQRLG 242 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~--~~~~~il~~a~~~g 242 (625)
..+.+...+++.|..+... . +..+.++.+++..+++|++.... .+...++++.++..
T Consensus 18 ~~~~l~~~L~~~g~~v~~~---~--------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 18 MAAAIERVLKRDHWQVEIA---H--------NGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp HHHHHHHHHHHTTCEEEEE---S--------SHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCcEEEEe---C--------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 5677778888777765421 1 23345566666778999987543 45677787777654
No 293
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=32.94 E-value=1.4e+02 Score=25.91 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=55.0
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+||+... -...+-.+++..+.+... .+++++.. ++.+.++..|.+|++|+++..
T Consensus 13 ~g~lrIg~~~~--------------~~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 70 (228)
T 2fyi_A 13 SGVLTIATTHT--------------QARYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIAS 70 (228)
T ss_dssp CEEEEEEECHH--------------HHHHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred cceEEEeeccc--------------hHHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCccEEEEe
Confidence 46799998421 112455678888888774 34477766 558899999999999999863
Q ss_pred eeeecccccceEecccccccceEEEEecC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVR 569 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~ 569 (625)
.. ......+.+ .++....+.++++..
T Consensus 71 ~~--~~~~~~l~~-~~l~~~~~~~v~~~~ 96 (228)
T 2fyi_A 71 ER--LSNDPQLVA-FPWFRWHHSLLVPHD 96 (228)
T ss_dssp SS--STTCTTEEE-EEEEEECEEEEEETT
T ss_pred cc--cCCCCCceE-EEeeecceEEEecCC
Confidence 21 111223333 467777788887654
No 294
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=32.89 E-value=33 Score=31.50 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=50.2
Q ss_pred HHHHHHHHHH-----HcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCC-CChhHHHHHHHHHhcCCc
Q 006916 146 LMSAIAEMVS-----YFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQS-VTETDVRNELVKVRMMEA 219 (625)
Q Consensus 146 ~~~al~~ll~-----~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~-~~~~~~~~~l~~i~~~~~ 219 (625)
.++.+++++. ...-++|.++..+. ..+.+.+.|++.|..|.....|..... .....+ .+.++....
T Consensus 115 ~~e~L~~~l~~~~~~~~~~~~vL~~rg~~-----~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~---~~~l~~~~~ 186 (254)
T 4es6_A 115 DSEALLALPAFQDSLRVHDPKVLIMRGEG-----GREFLAERLRGQGVQVDYLPLYRRRAPDYPAGEL---LARVRAERL 186 (254)
T ss_dssp SHHHHHTCHHHHHHTCSSSCEEEEEECSS-----CCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHH---HHHHHHTTC
T ss_pred CHHHHHHhHhhcccccCCCCEEEEEcCCc-----cHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHH---HHHHHhCCC
Confidence 4577777765 23457887776543 355677888889988765544432210 122233 333444456
Q ss_pred eEEEEEcchhhHHHHHHHHH
Q 006916 220 RVIVVHGYSRTGLMVFDVAQ 239 (625)
Q Consensus 220 ~vIvl~~~~~~~~~il~~a~ 239 (625)
++| ++.+++.+..+++.+.
T Consensus 187 d~v-~ftS~s~v~~~~~~~~ 205 (254)
T 4es6_A 187 NGL-VVSSGQGLQNLYQLAA 205 (254)
T ss_dssp CEE-ECCSHHHHHHHHHHHG
T ss_pred CEE-EEcCHHHHHHHHHHhh
Confidence 654 5677788888877664
No 295
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=32.80 E-value=63 Score=30.77 Aligned_cols=99 Identities=10% Similarity=0.036 Sum_probs=54.7
Q ss_pred ceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHH--HHHcCccc---E
Q 006916 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELIN--QITTGVFD---A 536 (625)
Q Consensus 462 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~--~l~~~~~D---~ 536 (625)
|++++.++ |.| | +...-+.=.|.+.+.+.||.+ +..... ....|.++ .+.+++.| +
T Consensus 17 kpi~liVp----~~~------G-G~~D~~aR~la~~l~~~lg~~--vvV~N~------pGa~g~ig~~~v~~a~~DGytl 77 (312)
T 2f5x_A 17 RPVNMVVP----FAA------G-GPTDNVARSLAESMRPTLGET--VVVENK------GGAGGTIGTTQVARAQPDGYSI 77 (312)
T ss_dssp SCEEEEES----SCT------T-SHHHHHHHHHHHHHHHHHSSC--EEEEEC------CCGGGHHHHHHHHTSCSSSSEE
T ss_pred CCEEEEEe----eCC------c-cHHHHHHHHHHHHHHHHhCCC--EEEEec------CChHHHHHHHHHHhCCCCCcEE
Confidence 56777773 333 1 222234446778888889988 554442 22677774 57888888 7
Q ss_pred EEeee--eeecccccceEe------cc--cccccceEEEEecCCCCcCcchhc
Q 006916 537 AVGDI--AIVTNRTKAVDF------TQ--PYIESGLVVVAPVRKLNSSAWAFL 579 (625)
Q Consensus 537 ~~~~~--~~t~~R~~~vdf------s~--p~~~~~~~~l~~~~~~~~~~~~~l 579 (625)
.++.. ++++.+...+.| +. .+......++++....-.++-.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~yd~~~df~pv~~~~~~~~~lvv~~ds~~~sl~dL~ 130 (312)
T 2f5x_A 78 LLMHAGFSTAPSLYKNPGYEPYTSFEPIGLVVDVPMTIIARGDFPPNNIKELA 130 (312)
T ss_dssp EEEETHHHHGGGTCSCCSSCTTTSEEEEEEEEEEEEEEEECTTCSCCSHHHHH
T ss_pred EEecCHHHHHHHHcCCCCCCcccccceeeecccCcEEEEEeCCCCCCCHHHHH
Confidence 76543 345555443333 21 134455666666544333443443
No 296
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=32.11 E-value=1.4e+02 Score=25.87 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=45.3
Q ss_pred cCCcEEEEEEecCC-----CCcchHHHHHHHHhc---cceEEEEeeecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcc
Q 006916 157 FGWGEVIAIFNDDD-----QGRNGVTALGDKLAE---IRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY 227 (625)
Q Consensus 157 ~~W~~v~ii~~d~~-----~g~~~~~~l~~~l~~---~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~ 227 (625)
+.--+++||...|+ .-......+...+++ .|.++.....++.+ .+.+...+++..+ .++|+||+.+.
T Consensus 12 ~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~~DlVIttGG 87 (189)
T 1jlj_A 12 DHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE----IEEIKETLIDWCDEKELNLILTTGG 87 (189)
T ss_dssp -CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred cCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC----HHHHHHHHHHHhhcCCCCEEEEcCC
Confidence 34456777776442 112345678888887 78888877777644 7778888887654 36899988754
Q ss_pred h
Q 006916 228 S 228 (625)
Q Consensus 228 ~ 228 (625)
.
T Consensus 88 t 88 (189)
T 1jlj_A 88 T 88 (189)
T ss_dssp C
T ss_pred C
Confidence 4
No 297
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=31.85 E-value=52 Score=30.59 Aligned_cols=84 Identities=5% Similarity=-0.084 Sum_probs=49.1
Q ss_pred HHHcCCcEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhH
Q 006916 154 VSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTG 231 (625)
Q Consensus 154 l~~~~W~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~ 231 (625)
|+.-.=..|+++..+ +.|.....+.+.+.+++.|..+.... .. .+...-...++.+...+.+.||+.......
T Consensus 15 L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 89 (293)
T 2iks_A 15 LRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIAC---SE--DQPDNEMRCIEHLLQRQVDAIIVSTSLPPE 89 (293)
T ss_dssp ---CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECCSSCTT
T ss_pred hhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEc---CC--CCHHHHHHHHHHHHHcCCCEEEEeCCCCCc
Confidence 334344678888764 34555677888888888898876432 11 123444556777777788888876543222
Q ss_pred HHHHHHHHHcC
Q 006916 232 LMVFDVAQRLG 242 (625)
Q Consensus 232 ~~il~~a~~~g 242 (625)
..+++.+.+.+
T Consensus 90 ~~~~~~~~~~~ 100 (293)
T 2iks_A 90 HPFYQRWANDP 100 (293)
T ss_dssp CHHHHTTTTSS
T ss_pred HHHHHHHHhCC
Confidence 23444444444
No 298
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=31.43 E-value=87 Score=28.92 Aligned_cols=80 Identities=6% Similarity=-0.003 Sum_probs=48.3
Q ss_pred CCcEEEEEEecC----CCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHH
Q 006916 158 GWGEVIAIFNDD----DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLM 233 (625)
Q Consensus 158 ~W~~v~ii~~d~----~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~ 233 (625)
.=+.|+++..+. .|.....+.+.+.+++.|..+.....- .+........+.+...+.+.||+...... ..
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 80 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHI-----HAKDSMVPIRYILETGSADGVIISKIEPN-DP 80 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBS-----SGGGTTHHHHHHHHHTCCSEEEEESCCTT-CH
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCC-----cchhHHHHHHHHHHcCCccEEEEecCCCC-cH
Confidence 346788888742 566677888888999999887653211 11222234444555678888887643322 24
Q ss_pred HHHHHHHcCC
Q 006916 234 VFDVAQRLGM 243 (625)
Q Consensus 234 il~~a~~~g~ 243 (625)
.++.+.+.++
T Consensus 81 ~~~~l~~~~i 90 (288)
T 3gv0_A 81 RVRFMTERNM 90 (288)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHhhCCC
Confidence 4566666554
No 299
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=31.05 E-value=2.7e+02 Score=24.55 Aligned_cols=86 Identities=14% Similarity=0.048 Sum_probs=54.5
Q ss_pred cEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEE--Ecch----hhHHH
Q 006916 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV--HGYS----RTGLM 233 (625)
Q Consensus 160 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl--~~~~----~~~~~ 233 (625)
.+|.+-....+.-.-+..-+...++..|++|.+- -.. . ....+++.+++.++++|.+ .+.. ..+..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~L---G~~--v---p~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~ 164 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDL---GVD--V---LNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKD 164 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEEC---CSS--C---CHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEc---CCC--C---CHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHH
Confidence 3565555455555566788888999999998742 111 1 2335667777788999998 5443 34667
Q ss_pred HHHHHHHcCCCCCCeEEEee
Q 006916 234 VFDVAQRLGMMDSGYVWIAT 253 (625)
Q Consensus 234 il~~a~~~g~~~~~~~~i~~ 253 (625)
++++.++.++...-.+|+..
T Consensus 165 ~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 165 LMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp HHHHHHHTTCGGGSEEEEES
T ss_pred HHHHHHHcCCCCCCEEEEEC
Confidence 77788877753233455554
No 300
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=30.96 E-value=1.2e+02 Score=28.89 Aligned_cols=65 Identities=3% Similarity=-0.068 Sum_probs=41.4
Q ss_pred CCcEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 006916 158 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (625)
Q Consensus 158 ~W~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 226 (625)
.-..|+++..+ +.|.....+.+.+.+++.|..+..... . . .+.......++.+...+.+.||+..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~-~--~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV-E-R--SGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-C-S--SSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC-C-C--CcHHHHHHHHHHHHHCCCCEEEEec
Confidence 34678888864 345556678888888899988765321 1 1 1123345567777777888888764
No 301
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=30.82 E-value=1.1e+02 Score=27.02 Aligned_cols=82 Identities=12% Similarity=0.075 Sum_probs=54.5
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+||+... -...+-.+++..+.+... .+++++.. +....++..|.+|++|+++..
T Consensus 26 ~g~l~Ig~~~~--------------~~~~~l~~~l~~f~~~~P-~i~l~i~~-------~~~~~~~~~L~~g~~Dl~i~~ 83 (238)
T 3onm_A 26 EGSLIIGASDD--------------TADTLLPFLLNRVATLYP-RLAIDVRV-------KRSPFIADMLSSGEVDLAITT 83 (238)
T ss_dssp -CCEEEEECHH--------------HHTTHHHHHHHHHHHHCT-TCCEEEEE-------CCHHHHHHHHHHTSCSEEEEC
T ss_pred ceeEEEeccch--------------hhHHHHHHHHHHHHHHCC-CcEEEEEE-------CCHHHHHHHHHCCCccEEEEe
Confidence 46789998421 112455678888887764 23477776 558999999999999999864
Q ss_pred eeeecccccceEecccccccceEEEEecCC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
... ..+ -+.++....+.++++...
T Consensus 84 ~~~-----~~~-~~~~l~~~~~~~v~~~~~ 107 (238)
T 3onm_A 84 AKV-----DSH-PHVILRTSPTLWYCSVDY 107 (238)
T ss_dssp SCC------CC-CEEEEEEECEEEEEETTC
T ss_pred cCC-----CCc-ceEEeecCCEEEEEcCCC
Confidence 321 112 235677788888887644
No 302
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=30.77 E-value=82 Score=28.95 Aligned_cols=71 Identities=7% Similarity=-0.040 Sum_probs=47.1
Q ss_pred eeHHHHHHHHHHC-CCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecc---cccceEecccccccceEEE
Q 006916 490 YCIDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTN---RTKAVDFTQPYIESGLVVV 565 (625)
Q Consensus 490 ~~idl~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~~---R~~~vdfs~p~~~~~~~~l 565 (625)
+--++++.+.++. +.+ +.+.. ++-...+.+|.+|++|+++....++.+ +...+ -..|+....+.++
T Consensus 17 ~l~~~~~~f~~~~P~v~--i~v~~-------~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvv 86 (264)
T 4ecf_A 17 LVEAAGEQYTGEHLGTF--INVQG-------GGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPI 86 (264)
T ss_dssp HHHHHHHHHHHHSTTEE--EEEEE-------ECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCce--EEEEe-------CCCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEE
Confidence 3346677777665 444 44444 447889999999999999876554432 11222 3568888899999
Q ss_pred EecCC
Q 006916 566 APVRK 570 (625)
Q Consensus 566 ~~~~~ 570 (625)
++...
T Consensus 87 v~~~~ 91 (264)
T 4ecf_A 87 VNKKV 91 (264)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 87644
No 303
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=30.77 E-value=2.1e+02 Score=27.22 Aligned_cols=74 Identities=16% Similarity=0.059 Sum_probs=47.9
Q ss_pred cEEEEEEecCCCCc----chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHH
Q 006916 160 GEVIAIFNDDDQGR----NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 235 (625)
Q Consensus 160 ~~v~ii~~d~~~g~----~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il 235 (625)
+++.+|+.-. .|. ...+.+.+.+++.|+.+....+-. ..+.....+++...+.+.||+.+.......++
T Consensus 25 ~~i~vI~NP~-sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~------~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~ 97 (337)
T 2qv7_A 25 KRARIIYNPT-SGKEQFKRELPDALIKLEKAGYETSAYATEK------IGDATLEAERAMHENYDVLIAAGGDGTLNEVV 97 (337)
T ss_dssp EEEEEEECTT-STTSCHHHHHHHHHHHHHHTTEEEEEEECCS------TTHHHHHHHHHTTTTCSEEEEEECHHHHHHHH
T ss_pred ceEEEEECCC-CCCCchHHHHHHHHHHHHHcCCeEEEEEecC------cchHHHHHHHHhhcCCCEEEEEcCchHHHHHH
Confidence 6788888533 332 345678888888898776543222 22444555666666778888887777777777
Q ss_pred HHHHH
Q 006916 236 DVAQR 240 (625)
Q Consensus 236 ~~a~~ 240 (625)
..+.+
T Consensus 98 ~~l~~ 102 (337)
T 2qv7_A 98 NGIAE 102 (337)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 77643
No 304
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=30.62 E-value=1.3e+02 Score=27.37 Aligned_cols=79 Identities=1% Similarity=0.014 Sum_probs=48.9
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~ 236 (625)
+.|+++..+ +.|.....+.+.+.+++.|..+..... . .+...-...++.+...+.+.||+.... +.....++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS---Q--NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 76 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 467787764 345556778888888888987764321 1 123334456677777788888875433 22234566
Q ss_pred HHHHcCC
Q 006916 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~g~ 243 (625)
.+.+.++
T Consensus 77 ~~~~~~i 83 (271)
T 2dri_A 77 MANQANI 83 (271)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6666553
No 305
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=30.60 E-value=1.6e+02 Score=28.92 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=59.2
Q ss_pred HHHHcCCcEEEEEEecCCCCcchHHHHHHHHhcc------ceEEEEeeecCCCC-CCChhHHHHHHHHHhcCC--c---e
Q 006916 153 MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI------RCKISYKSALPPDQ-SVTETDVRNELVKVRMME--A---R 220 (625)
Q Consensus 153 ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~------g~~v~~~~~~~~~~-~~~~~~~~~~l~~i~~~~--~---~ 220 (625)
+++.++.+++.+|++..... ...+.+.+.+++. |+.+.. ..++.+. ..+.+.+....+.+++.+ . +
T Consensus 30 ~~~~~~~~k~liVtd~~v~~-~~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d 107 (393)
T 1sg6_A 30 LISDCSSTTYVLVTDTNIGS-IYTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDT 107 (393)
T ss_dssp HHHHSCCSEEEEEEEHHHHH-HHHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTC
T ss_pred HHHhcCCCeEEEEECCcHHH-HHHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCC
Confidence 34677889999888654322 2466777777766 666542 2344321 234567788888888777 6 8
Q ss_pred EEEEEcch--hhHHHHHHHHHHcCCCCCCeEEEeeC
Q 006916 221 VIVVHGYS--RTGLMVFDVAQRLGMMDSGYVWIATT 254 (625)
Q Consensus 221 vIvl~~~~--~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (625)
.||-.+.+ -++..+.......| -.++-|-+.
T Consensus 108 ~iIalGGGsv~D~ak~~Aa~~~rg---ip~i~IPTT 140 (393)
T 1sg6_A 108 VVIALGGGVIGDLTGFVASTYMRG---VRYVQVPTT 140 (393)
T ss_dssp EEEEEESHHHHHHHHHHHHHGGGC---CEEEEEECS
T ss_pred EEEEECCcHHHHHHHHHHHHhcCC---CCEEEECCc
Confidence 88876554 45666665544444 345555554
No 306
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=30.51 E-value=1.2e+02 Score=27.91 Aligned_cols=79 Identities=8% Similarity=0.052 Sum_probs=47.7
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~ 236 (625)
+.|+++..+ +.|.....+.+.+.+++.|..+..... . .+...-...++.+...+.+.||+.... +.....++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS---Q--NDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIK 76 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHH
Confidence 357777754 345556677888888888887764321 1 123333455666667788888775432 33334566
Q ss_pred HHHHcCC
Q 006916 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~g~ 243 (625)
.+.+.|+
T Consensus 77 ~~~~~~i 83 (283)
T 2ioy_A 77 EANSKNI 83 (283)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6666664
No 307
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=30.46 E-value=1.1e+02 Score=28.29 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=53.8
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+||+... -...+-.+++..+.+... .+++++.. ++...++..|.+|++|+++..
T Consensus 94 ~g~l~i~~~~~--------------~~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 151 (306)
T 3fzv_A 94 AGQIDIGCFET--------------VAPLYLPGLIAGFRQAYP-GVEIRIRD-------GEQQELVQGLTSGRFDLAFLY 151 (306)
T ss_dssp CEEEEEEEEGG--------------GHHHHHHHHHHHHHHHCT-TEEEEEEE-------ECHHHHHHHHHHTSCSEEEEC
T ss_pred CceEEEEechh--------------hhHHHHHHHHHHHHHHCC-CeEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 46799999421 112455677888887764 23366666 558899999999999999763
Q ss_pred eeeecccccceEeccccc-ccceEEEEecCC
Q 006916 541 IAIVTNRTKAVDFTQPYI-ESGLVVVAPVRK 570 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~-~~~~~~l~~~~~ 570 (625)
- ......+.+ .|.. .....++++...
T Consensus 152 ~---~~~~~~l~~-~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 152 E---HDLDSTIET-EPLMPPQRPHALLPEGH 178 (306)
T ss_dssp S---SSCCTTEEE-EESSCCBCCEEEEETTC
T ss_pred c---cccccccce-eeeeeccccEEEecCCC
Confidence 2 222333333 3555 666777776543
No 308
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=30.45 E-value=86 Score=28.58 Aligned_cols=78 Identities=8% Similarity=0.050 Sum_probs=48.6
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~ 237 (625)
+.|+++..+ +.|.....+.+.+.+++.|..+.... .. .+...-...++.+...+.+.||+...... ...++.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~ 77 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGY---SD--YSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQL 77 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEE---CT--TCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEc---CC--CCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHH
Confidence 467888764 34555677888888889998775432 11 22444456677777778888877654322 245556
Q ss_pred HHHcCC
Q 006916 238 AQRLGM 243 (625)
Q Consensus 238 a~~~g~ 243 (625)
+.+.++
T Consensus 78 l~~~~i 83 (275)
T 3d8u_A 78 LEASNT 83 (275)
T ss_dssp HHHHTC
T ss_pred HHhCCC
Confidence 655553
No 309
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=30.44 E-value=1.6e+02 Score=27.33 Aligned_cols=87 Identities=14% Similarity=0.116 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEE--
Q 006916 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH-- 225 (625)
Q Consensus 148 ~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~-- 225 (625)
..++.-...-|-..+.++.+ +.|.....+.++..-+..++.|.... +- .+++ ++...+..+++.|++.
T Consensus 75 ~~~A~~y~~~GA~~isvltd-~~~f~Gs~~~l~~ir~~v~lPvl~kd-fi------id~~--qv~~A~~~GAD~VlLi~a 144 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVTE-QRRFQGSLDDLDAVRASVSIPVLRKD-FV------VQPY--QIHEARAHGADMLLLIVA 144 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECC-GGGHHHHHHHHHHHHHHCSSCEEEES-CC------CSHH--HHHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHHcCCCEEEEecC-hhhcCCCHHHHHHHHHhCCCCEEECc-cc------cCHH--HHHHHHHcCCCEEEEecc
Confidence 45667777789999998864 44444445555555444566665322 11 1122 3556667899999884
Q ss_pred -cchhhHHHHHHHHHHcCCC
Q 006916 226 -GYSRTGLMVFDVAQRLGMM 244 (625)
Q Consensus 226 -~~~~~~~~il~~a~~~g~~ 244 (625)
...++...++..+.++||.
T Consensus 145 ~l~~~~l~~l~~~a~~lGl~ 164 (272)
T 3qja_A 145 ALEQSVLVSMLDRTESLGMT 164 (272)
T ss_dssp GSCHHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHHHCCCc
Confidence 3456788888999998874
No 310
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=30.07 E-value=41 Score=31.25 Aligned_cols=79 Identities=5% Similarity=-0.113 Sum_probs=49.6
Q ss_pred CCcEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHH
Q 006916 158 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 235 (625)
Q Consensus 158 ~W~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il 235 (625)
+=+.|+++..+ +.|.....+.+++.+++.|..+..... . .+...-...++.+...+.+.||+..... ....+
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~ 80 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT---A--EDIVREREAVGQFFERRVDGLILAPSEG-EHDYL 80 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC---C--CCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHH
Confidence 34678888864 344556678888888888988765321 1 2244456677777778888888765543 23445
Q ss_pred HHHHHcC
Q 006916 236 DVAQRLG 242 (625)
Q Consensus 236 ~~a~~~g 242 (625)
+.+.+.+
T Consensus 81 ~~~~~~~ 87 (291)
T 3egc_A 81 RTELPKT 87 (291)
T ss_dssp HHSSCTT
T ss_pred HHhhccC
Confidence 5544444
No 311
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=29.93 E-value=74 Score=29.57 Aligned_cols=78 Identities=3% Similarity=-0.100 Sum_probs=49.4
Q ss_pred cEEEEEEe-------cCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHH
Q 006916 160 GEVIAIFN-------DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGL 232 (625)
Q Consensus 160 ~~v~ii~~-------d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~ 232 (625)
+.|++|.. .+.|.....+.+.+.+++.|..+... ... .+...-...++.+...+.+.||+...... .
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~ 81 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTT---VSN--NMNDLMDEVYKMIKQRMVDAFILLYSKEN-D 81 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEEC---CCC--SHHHHHHHHHHHHHTTCCSEEEESCCCTT-C
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEE---cCC--CChHHHHHHHHHHHhCCcCEEEEcCcccC-h
Confidence 56888872 34566677888999999999887642 211 12333455677777788898888643322 2
Q ss_pred HHHHHHHHcCC
Q 006916 233 MVFDVAQRLGM 243 (625)
Q Consensus 233 ~il~~a~~~g~ 243 (625)
..++.+.+.++
T Consensus 82 ~~~~~l~~~~i 92 (295)
T 3hcw_A 82 PIKQMLIDESM 92 (295)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhCCC
Confidence 45566666554
No 312
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=29.36 E-value=1.8e+02 Score=27.35 Aligned_cols=80 Identities=6% Similarity=-0.020 Sum_probs=49.5
Q ss_pred CcEEEEEEec-CCCCcchHHHHHHHHhcc-ceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh-hHHHHH
Q 006916 159 WGEVIAIFND-DDQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVF 235 (625)
Q Consensus 159 W~~v~ii~~d-~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~-~~~~il 235 (625)
-..|+++..+ +.|.....+.+.+.+++. |+.+..... . .+...-...++.+...+.+.||+..... .....+
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 80 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA---G--DDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIV 80 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 3578888765 223345667788888888 888765321 1 2234445567777777889888865443 334566
Q ss_pred HHHHHcCC
Q 006916 236 DVAQRLGM 243 (625)
Q Consensus 236 ~~a~~~g~ 243 (625)
+.+.+.++
T Consensus 81 ~~~~~~~i 88 (325)
T 2x7x_A 81 EEAYQKGI 88 (325)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 67766554
No 313
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=29.35 E-value=2.5e+02 Score=27.00 Aligned_cols=88 Identities=19% Similarity=0.190 Sum_probs=62.6
Q ss_pred cCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCc
Q 006916 140 APNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEA 219 (625)
Q Consensus 140 ~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 219 (625)
.|+.....+.+.++++..+-+.|.|.. |.+. ..+.|++.+.+.++.++ .+.+. ..+++..--+.+
T Consensus 261 lPSle~I~rqIk~~vk~~~lksVFIAT-Da~~---~~~ELk~~L~~~~v~vv---~~~pe--------~a~ID~~I~~~A 325 (362)
T 3zy2_A 261 SPSKQQILEQIVEKVGSIGAKSVFVAS-DKDH---MIDEINEALKPYEIEAH---RQEPD--------DMYTSLAIMGRA 325 (362)
T ss_dssp SCCHHHHHHHHHHHHHHHTCSEEEEEE-SSCC---CHHHHHHHHGGGTCCEE---CCSSC--------CHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEec-CCHH---HHHHHHHHhhccCceEE---EeCCc--------hhHHHHHHHHhC
Confidence 588899999999999999999997665 4432 47889999987777765 23322 234555445678
Q ss_pred eEEEEEcchhhHHHHHHHHHHcC
Q 006916 220 RVIVVHGYSRTGLMVFDVAQRLG 242 (625)
Q Consensus 220 ~vIvl~~~~~~~~~il~~a~~~g 242 (625)
+.+|-.+.++-...+.++=.-.|
T Consensus 326 ~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 326 DLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp SEEEECTTCHHHHHHHHHHHHSS
T ss_pred CEeecCccccccHHHHHHHHhcC
Confidence 88888877777776766655555
No 314
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=29.29 E-value=50 Score=31.53 Aligned_cols=82 Identities=12% Similarity=0.037 Sum_probs=45.8
Q ss_pred eeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHH--HHHHcCccc---EEEee---eeeecccc-cceEe------c
Q 006916 490 YCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELI--NQITTGVFD---AAVGD---IAIVTNRT-KAVDF------T 554 (625)
Q Consensus 490 ~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~--~~l~~~~~D---~~~~~---~~~t~~R~-~~vdf------s 554 (625)
+.=.|.+.+.+.||.+ +..... ....|.+ ..+.+++.| +.++. +++++.+. +.+.| +
T Consensus 36 ~aR~la~~l~~~lg~~--vvV~N~------pGa~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~~~yd~~~df~ 107 (314)
T 2dvz_A 36 IARLVTQRMSQELGQP--MVVENK------GGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQ 107 (314)
T ss_dssp HHHHHHHHHHHHHTSC--EEEEEC------CCGGGHHHHHHHHHSCTTSSEEEEECHHHHTHHHHHSTTTCSCCTTTSEE
T ss_pred HHHHHHHHHHHHhCCC--EEEEEC------CCchHHHHHHHHHhCCCCCcEEEEecCcHHHHHHHHhCCCCCCCchhccc
Confidence 3335677788888888 544442 1256777 458888888 76654 34444443 33333 2
Q ss_pred --ccccccceEEEEecCCCCcCcchhc
Q 006916 555 --QPYIESGLVVVAPVRKLNSSAWAFL 579 (625)
Q Consensus 555 --~p~~~~~~~~l~~~~~~~~~~~~~l 579 (625)
..+......++++....-.++-.++
T Consensus 108 pv~~~~~~~~~lvv~~ds~~~tl~dL~ 134 (314)
T 2dvz_A 108 PVTNFANTANVVAVNPKFPAKDFKGFL 134 (314)
T ss_dssp EEEEEEEECEEEEECTTSSCSSHHHHH
T ss_pred eeeEcccCCEEEEEeCCCCCCCHHHHH
Confidence 1245566677776554333333333
No 315
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=29.23 E-value=2.2e+02 Score=23.83 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=46.3
Q ss_pred cEEEEEEecCCC--Cc---chHHHHHHHHhcc-----ceEEEEeeecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcch
Q 006916 160 GEVIAIFNDDDQ--GR---NGVTALGDKLAEI-----RCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYS 228 (625)
Q Consensus 160 ~~v~ii~~d~~~--g~---~~~~~l~~~l~~~-----g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~~ 228 (625)
-+|+||...|+- |+ .....+.+.+++. |.++.....++.+ .+.+.+.+++..+ .+.|+||..+..
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG~ 81 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE----VERIKDILQKWSDVDEMDLILTLGGT 81 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCC----HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 467777654321 11 1234566667666 8888877667644 7778888887754 478999887544
Q ss_pred -----hhHHHHHHHH
Q 006916 229 -----RTGLMVFDVA 238 (625)
Q Consensus 229 -----~~~~~il~~a 238 (625)
+.....++++
T Consensus 82 g~g~~D~t~~a~~~~ 96 (167)
T 1uuy_A 82 GFTPRDVTPEATKKV 96 (167)
T ss_dssp SSSTTCCHHHHHHHH
T ss_pred CCCCCCchHHHHHHH
Confidence 3444455444
No 316
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=28.87 E-value=79 Score=30.01 Aligned_cols=79 Identities=5% Similarity=-0.017 Sum_probs=49.3
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCC--ceEEEEEcchh-hHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSR-TGLMV 234 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~vIvl~~~~~-~~~~i 234 (625)
..|+++..+ +.|.....+.+++.+++.|..+.... .. .+...-...++.+...+ .+.||+..... .....
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~---~~--~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLT---TE--GSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEE---CT--TCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEec---CC--CCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHH
Confidence 468888763 34555667888888888898876432 11 22334455667766667 88888765433 33456
Q ss_pred HHHHHHcCC
Q 006916 235 FDVAQRLGM 243 (625)
Q Consensus 235 l~~a~~~g~ 243 (625)
++.+.+.++
T Consensus 81 ~~~~~~~~i 89 (332)
T 2rjo_A 81 VEACSKAGA 89 (332)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 666666553
No 317
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=28.56 E-value=95 Score=28.79 Aligned_cols=77 Identities=8% Similarity=0.098 Sum_probs=46.4
Q ss_pred cEEEEEEe------cCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHH
Q 006916 160 GEVIAIFN------DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLM 233 (625)
Q Consensus 160 ~~v~ii~~------d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~ 233 (625)
+.|+++.. ++.|.....+.+.+.+++.|..+.....-. . ......++.+...+.+.||+....... .
T Consensus 7 ~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~-----~~~~~~~~~l~~~~vdGiIi~~~~~~~-~ 79 (294)
T 3qk7_A 7 DAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP-G-----EKYQSLIHLVETRRVDALIVAHTQPED-F 79 (294)
T ss_dssp CEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT-T-----CCCHHHHHHHHHTCCSEEEECSCCSSC-H
T ss_pred ceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC-h-----hhHHHHHHHHHcCCCCEEEEeCCCCCh-H
Confidence 56888876 234555677888888888888776544322 1 122345556666678888776543222 4
Q ss_pred HHHHHHHcCC
Q 006916 234 VFDVAQRLGM 243 (625)
Q Consensus 234 il~~a~~~g~ 243 (625)
.++.+.+.++
T Consensus 80 ~~~~l~~~~i 89 (294)
T 3qk7_A 80 RLQYLQKQNF 89 (294)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhCCC
Confidence 5566666553
No 318
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=28.17 E-value=1.2e+02 Score=27.77 Aligned_cols=68 Identities=6% Similarity=-0.002 Sum_probs=45.3
Q ss_pred HHHcCCcEEEEEEec--CCCCcchHHHHHHHHhccceE-EEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 006916 154 VSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCK-ISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (625)
Q Consensus 154 l~~~~W~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 226 (625)
|+.-.-+.|+++..+ +.|.....+.+.+.+++.|.. +... ... .+...-...++.+...+.+.||+..
T Consensus 5 L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 5 LYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISF---STN--SDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ---CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CSS--CCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEE---eCC--CChHHHHHHHHHHHhCCCCEEEEcc
Confidence 444455788988875 445667788888999999988 6532 211 2344455667778778899888876
No 319
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=28.01 E-value=2.6e+02 Score=23.13 Aligned_cols=76 Identities=7% Similarity=-0.042 Sum_probs=43.4
Q ss_pred cEEEEEEecCCCCc--chHHHHHHHHhccceEEEEeeecCCCCCCChh-HHHHHHHHHhcCCceEEEEEcch--hh--HH
Q 006916 160 GEVIAIFNDDDQGR--NGVTALGDKLAEIRCKISYKSALPPDQSVTET-DVRNELVKVRMMEARVIVVHGYS--RT--GL 232 (625)
Q Consensus 160 ~~v~ii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~-~~~~~l~~i~~~~~~vIvl~~~~--~~--~~ 232 (625)
+++.|+|.. .+|. ..++.+.+.+++.|+.+... +.. .. +....+..+. ..+.||+.++. .. ..
T Consensus 5 ~kv~IvY~S-~~GnT~~iA~~ia~~l~~~g~~v~~~---~~~----~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~ 74 (159)
T 3fni_A 5 TSIGVFYVS-EYGYSDRLAQAIINGITKTGVGVDVV---DLG----AAVDLQELRELVG--RCTGLVIGMSPAASAASIQ 74 (159)
T ss_dssp CEEEEEECT-TSTTHHHHHHHHHHHHHHTTCEEEEE---ESS----SCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHH
T ss_pred CEEEEEEEC-CChHHHHHHHHHHHHHHHCCCeEEEE---ECc----CcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHH
Confidence 578888853 3443 55678888888888776532 221 22 3444555554 46777776554 11 23
Q ss_pred HHHHHHHHcCCCC
Q 006916 233 MVFDVAQRLGMMD 245 (625)
Q Consensus 233 ~il~~a~~~g~~~ 245 (625)
.++.......+.+
T Consensus 75 ~~l~~l~~~~~~~ 87 (159)
T 3fni_A 75 GALSTILGSVNEK 87 (159)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHhhcccC
Confidence 5666655544433
No 320
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=27.62 E-value=96 Score=28.95 Aligned_cols=79 Identities=6% Similarity=-0.089 Sum_probs=48.1
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhh-HHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~-~~~il~ 236 (625)
.+|+++..+ +.|.....+.+++.+++.|..+..... . .+...-...++.+...+.+.||+...... ....++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG---Q--QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLK 77 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHH
Confidence 467888764 334555667788888888988765321 1 22344455667776677888887654322 234566
Q ss_pred HHHHcCC
Q 006916 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~g~ 243 (625)
.+.+.++
T Consensus 78 ~~~~~~i 84 (306)
T 2vk2_A 78 EAKDAEI 84 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6666553
No 321
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=27.45 E-value=69 Score=27.73 Aligned_cols=84 Identities=15% Similarity=0.214 Sum_probs=54.5
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006916 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~ 540 (625)
.++|+||+... . ...+-.+++..+.+... .+++++.. +..+.++..|.+|++|+++..
T Consensus 7 ~g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Di~i~~ 64 (222)
T 4ab5_A 7 AGELRIAVECH--T------------CFDWLMPAMGEFRPMWP-QVELDIVS-------GFQADPVGLLLQHRADLAIVS 64 (222)
T ss_dssp TEEEEEECCCT--T------------THHHHHHHHHHHHHHST-TEEEEEEC-------CCCSCTHHHHHTTSCSEEEES
T ss_pred cceEEEEEehH--H------------HHHHHHHHHHHHHHHCC-CcEEEEec-------CCHHHHHHHHHcCCcCEEEec
Confidence 46789988421 1 12444577888877764 23366665 557789999999999999874
Q ss_pred eeeecccccceEecccccccceEEEEecCC
Q 006916 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
... ....+.+ .++....+.+++++..
T Consensus 65 ~~~---~~~~~~~-~~l~~~~~~~v~~~~~ 90 (222)
T 4ab5_A 65 EAE---KQNGISF-QPLFAYEMVGICAPDH 90 (222)
T ss_dssp CCC---CCTTEEE-EEEEEEEEEEEECTTS
T ss_pred CCC---CcCCeEE-EEeecCcEEEEecCCC
Confidence 332 2233443 4677778888886543
No 322
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=27.35 E-value=96 Score=28.65 Aligned_cols=79 Identities=9% Similarity=-0.070 Sum_probs=47.9
Q ss_pred CcEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHH---HHHHHhcCCceEEEEEcchhhHHH
Q 006916 159 WGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRN---ELVKVRMMEARVIVVHGYSRTGLM 233 (625)
Q Consensus 159 W~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~---~l~~i~~~~~~vIvl~~~~~~~~~ 233 (625)
-..|+++..+ +.|.....+.+.+.+++.|..+.... .. .+...-.. .++.+...+.+.||+...... ..
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 81 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVAT---GC--GESTPREQALEAVRFLIGRDCDGVVVISHDLH-DE 81 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEEC---CC--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEe---CC--CchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HH
Confidence 3578888753 34556677888888888998876432 11 11223334 667777778888887654322 23
Q ss_pred HHHHHHHcCC
Q 006916 234 VFDVAQRLGM 243 (625)
Q Consensus 234 il~~a~~~g~ 243 (625)
.++.+.+.++
T Consensus 82 ~~~~l~~~~i 91 (290)
T 2rgy_A 82 DLDELHRMHP 91 (290)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHhhcCC
Confidence 4555555553
No 323
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=27.14 E-value=1.7e+02 Score=27.92 Aligned_cols=84 Identities=11% Similarity=0.009 Sum_probs=51.4
Q ss_pred HHHcCCcEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhH
Q 006916 154 VSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTG 231 (625)
Q Consensus 154 l~~~~W~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~ 231 (625)
++.-.-+.|+++..+ +.|.....+.+.+.+++.|..+..... . .+...-...++.+...+.+.||+......
T Consensus 65 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiI~~~~~~~- 138 (355)
T 3e3m_A 65 LTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT-A----YSPEREEQLVETMLRRRPEAMVLSYDGHT- 138 (355)
T ss_dssp ------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTCCSEEEEECSCCC-
T ss_pred hhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEeCCCCC-
Confidence 333344678988864 345556778888899999988765321 1 22444556777777788998888654432
Q ss_pred HHHHHHHHHcCC
Q 006916 232 LMVFDVAQRLGM 243 (625)
Q Consensus 232 ~~il~~a~~~g~ 243 (625)
...++.+.+.++
T Consensus 139 ~~~~~~l~~~~i 150 (355)
T 3e3m_A 139 EQTIRLLQRASI 150 (355)
T ss_dssp HHHHHHHHHCCS
T ss_pred HHHHHHHHhCCC
Confidence 245666666664
No 324
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=26.92 E-value=1.4e+02 Score=27.44 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=44.9
Q ss_pred HHHHHHHHHHC-CCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeec-c--cccceEecccccccceEEEEe
Q 006916 492 IDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVT-N--RTKAVDFTQPYIESGLVVVAP 567 (625)
Q Consensus 492 idl~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~-~--R~~~vdfs~p~~~~~~~~l~~ 567 (625)
-.+++.+.+.. +.+ +.+.. ++-...+.+|.+|++|+++....... + ....+ -..|+...++.++++
T Consensus 19 ~~~~~~F~~~~P~v~--i~v~~-------~gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l-~~~~ia~d~lvvvv~ 88 (265)
T 4exl_A 19 EVAADEFGTIHVGKT--VNVQG-------GGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASAL-VDHKVAVAGLALIVN 88 (265)
T ss_dssp HHHHHHHHHHSTTCE--EEEEE-------ECHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEEEC
T ss_pred HHHHHHHHHHCCCce--EEEee-------CCcHHHHHHHHcCCCccccccCCcchhhcccccCc-eEeeEEEEEEEEEEC
Confidence 35666676665 555 45444 44789999999999999987543321 1 11112 256888889999987
Q ss_pred cCC
Q 006916 568 VRK 570 (625)
Q Consensus 568 ~~~ 570 (625)
...
T Consensus 89 ~~~ 91 (265)
T 4exl_A 89 KEV 91 (265)
T ss_dssp TTC
T ss_pred CCC
Confidence 544
No 325
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=26.90 E-value=2.2e+02 Score=28.73 Aligned_cols=145 Identities=12% Similarity=0.028 Sum_probs=86.5
Q ss_pred CChHHHHHHHHHHHhcCcEEEE--cCCCh---H----HHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHH
Q 006916 75 FNGFLSIMGALQFMETDTLAIV--GPQSA---V----MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLY 145 (625)
Q Consensus 75 ~~~~~a~~~~~~l~~~~v~avi--G~~~s---~----~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~ 145 (625)
-.+..+...+.+++..++.+++ -...+ . ....+...++..++.+|.+.|.- +-+..-..-....|..
T Consensus 72 vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~G--v~~~~~~~~~~~~~~~-- 147 (457)
T 2csu_A 72 VPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCVG--IMNTHVDLNATFITVA-- 147 (457)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCCE--EEEGGGTEEEESSCCC--
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcce--EEccCCCceeeecCCC--
Confidence 3456666677777777775443 21111 1 25667788889999999765532 2211001111122221
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc-CCceEEEE
Q 006916 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVV 224 (625)
Q Consensus 146 ~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl 224 (625)
.. -+|++|.+... ....+...+.+.|+-+.....+-.. ...++.+.|+.+.+ .++++|++
T Consensus 148 ----------~~--G~v~~vsqSG~----~~~~~~~~~~~~g~G~s~~vs~G~~---~~~~~~d~l~~~~~D~~t~~I~l 208 (457)
T 2csu_A 148 ----------KK--GNVAFISQSGA----LGAGIVYKTIKEDIGFSKFISVGNM---ADVDFAELMEYLADTEEDKAIAL 208 (457)
T ss_dssp ----------EE--CSEEEEESCHH----HHHHHHHHHHHTTCEESEEEECTTC---CSSCHHHHHHHHTTCSSCCEEEE
T ss_pred ----------CC--CCEEEEeCCHH----HHHHHHHHHHhcCCCeeEEEECCCc---CCCCHHHHHHHHhcCCCCCEEEE
Confidence 11 56888875443 4556667777787766654444333 24467777777754 57899999
Q ss_pred Ecch-hhHHHHHHHHHHcC
Q 006916 225 HGYS-RTGLMVFDVAQRLG 242 (625)
Q Consensus 225 ~~~~-~~~~~il~~a~~~g 242 (625)
+... .+.+.+++.++...
T Consensus 209 ~~E~i~~~~~f~~~a~~~~ 227 (457)
T 2csu_A 209 YIEGVRNGKKFMEVAKRVT 227 (457)
T ss_dssp EESCCSCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHhc
Confidence 9987 66888888887653
No 326
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=26.89 E-value=1.9e+02 Score=28.49 Aligned_cols=97 Identities=18% Similarity=0.128 Sum_probs=58.7
Q ss_pred HHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCC-CCCChhHHHHHHHHHhcCCc---eEEEEEcch
Q 006916 153 MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPD-QSVTETDVRNELVKVRMMEA---RVIVVHGYS 228 (625)
Q Consensus 153 ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~l~~i~~~~~---~vIvl~~~~ 228 (625)
+++..+.+++.||++...+. ...+.+.+.+++.|+.+... .++.. ...+.+.+...++.+++.+. ++||-.+.+
T Consensus 56 ~l~~~~~~rvlIVtd~~v~~-~~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGG 133 (390)
T 3okf_A 56 LLSLSAKQKVVIVTNHTVAP-LYAPAIISLLDHIGCQHALL-ELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGG 133 (390)
T ss_dssp GGCCCTTCEEEEEEETTTHH-HHHHHHHHHHHHHTCEEEEE-EECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESH
T ss_pred HHHhcCCCEEEEEECCcHHH-HHHHHHHHHHHHcCCeEEEE-EECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCc
Confidence 34445678999888665443 36788888898888876532 23322 11346677778888877665 677776555
Q ss_pred --hhHHHHHHHHHHcCCCCCCeEEEeeC
Q 006916 229 --RTGLMVFDVAQRLGMMDSGYVWIATT 254 (625)
Q Consensus 229 --~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (625)
-++..++......| ..++-|-+.
T Consensus 134 sv~D~ak~~Aa~~~rg---ip~I~IPTT 158 (390)
T 3okf_A 134 VIGDLVGFAAACYQRG---VDFIQIPTT 158 (390)
T ss_dssp HHHHHHHHHHHHBTTC---CEEEEEECS
T ss_pred HHhhHHHHHHHHhcCC---CCEEEeCCC
Confidence 34455554433333 345555554
No 327
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=26.14 E-value=98 Score=25.74 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=45.2
Q ss_pred HHHHHHHHHHCCCCccEEEEeCCCCC--CCCCHHHHHHHHHcCcccEEEeeeeeecccc--cceEecc-cccccceEEEE
Q 006916 492 IDVFLAAVRLLPYAVPYKFIPYGDGH--KNPTYSELINQITTGVFDAAVGDIAIVTNRT--KAVDFTQ-PYIESGLVVVA 566 (625)
Q Consensus 492 idl~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~g~~~~l~~~~~D~~~~~~~~t~~R~--~~vdfs~-p~~~~~~~~l~ 566 (625)
.+.++..+...|+++ -.+...+.|. ....+..|+..+..|++|..+. ...+|. ...++-. -+...|+.+++
T Consensus 24 ~~~l~~~~~~~g~~v-~~~~D~~SG~~~~Rp~l~~ll~~~~~g~id~vvv---~~ldRL~R~~~~~l~~~l~~~gv~~~~ 99 (154)
T 3lhk_A 24 IQLIKSYAEENGWDI-QILKDIGSGLNEKRKNYKKLLKMVMNRKVEKVII---AYPDRLTRFGFETLKEFFKSYGTEIVI 99 (154)
T ss_dssp HHHHHHHHHHTTCCC-EEEEEESCTTCTTCHHHHHHHHHHHTTCEEEEEE---SSHHHHCSSCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHCCCEE-EEEEeccCCcCCCCHHHHHHHHHHHcCCCCEEEE---EeCCcccccHHHHHHHHHHHCCCEEEE
Confidence 466777888889886 3444444433 3446999999999999998854 333442 1223222 23345777776
Q ss_pred ec
Q 006916 567 PV 568 (625)
Q Consensus 567 ~~ 568 (625)
-.
T Consensus 100 ~~ 101 (154)
T 3lhk_A 100 IN 101 (154)
T ss_dssp SC
T ss_pred Ee
Confidence 43
No 328
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=26.10 E-value=1.9e+02 Score=24.61 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=41.0
Q ss_pred EEEEEEecCC--CC---cchHHHHHHHHh---ccceEEEEeeecCCCCCCChhHHHHHHHHHhcC-CceEEEEEcch
Q 006916 161 EVIAIFNDDD--QG---RNGVTALGDKLA---EIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGYS 228 (625)
Q Consensus 161 ~v~ii~~d~~--~g---~~~~~~l~~~l~---~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~vIvl~~~~ 228 (625)
+++||...|+ .| ......+.+.++ +.|.++ ....++.+ .+.+...+++..+. +.|+||..+..
T Consensus 7 rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd----~~~I~~~l~~~~~~~~~DlVittGG~ 78 (178)
T 2pbq_A 7 VIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDE----RDLIEKTLIELADEKGCSLILTTGGT 78 (178)
T ss_dssp EEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCC----HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 6777765432 11 123456777666 889988 55566643 77788888877653 68999887543
No 329
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=26.07 E-value=2.4e+02 Score=26.03 Aligned_cols=115 Identities=13% Similarity=0.061 Sum_probs=61.7
Q ss_pred ceEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHH
Q 006916 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (625)
Q Consensus 25 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~ 104 (625)
+-=+||.+.......+.....+++-|+++. |.++......+ .....+.+.+++ +++.||+.+.+....
T Consensus 139 g~~~I~~i~~~~~~~~~~r~~g~~~al~~~--------gi~~~~~~~~~---~~~~~~~~~~l~-~~~dai~~~~D~~a~ 206 (302)
T 2qh8_A 139 NVKSIGVVYNPGEANAVSLMELLKLSAAKH--------GIKLVEATALK---SADVQSATQAIA-EKSDVIYALIDNTVA 206 (302)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHT--------TCEEEEEECSS---GGGHHHHHHHHG-GGCSEEEECSCHHHH
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHHHc--------CCEEEEEecCC---hHHHHHHHHHHh-ccCCEEEECCcHhHH
Confidence 444788887654322344567777777662 44554433322 223334444554 467788876554332
Q ss_pred ---HHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHH
Q 006916 105 ---HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY 156 (625)
Q Consensus 105 ---~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~ 156 (625)
.++...+...++|++++.... +. .|-+.....+...+++..++++.+
T Consensus 207 g~~~~l~~~~~~~~i~vig~d~~~--~~---~~~Lttv~~~~~~~G~~Aa~~l~~ 256 (302)
T 2qh8_A 207 SAIEGMIVAANQAKTPVFGAATSY--VE---RGAIASLGFDYYQIGVQTADYVAA 256 (302)
T ss_dssp TTHHHHHHHHHHTTCCEEESSHHH--HH---TTCSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEECCHHH--Hh---CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 223444445789999863221 11 144445556666677766666533
No 330
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=26.06 E-value=2.8e+02 Score=23.00 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHhcCC--ceEEEEEcch------hhHHHHHHHHHHcC
Q 006916 204 ETDVRNELVKVRMME--ARVIVVHGYS------RTGLMVFDVAQRLG 242 (625)
Q Consensus 204 ~~~~~~~l~~i~~~~--~~vIvl~~~~------~~~~~il~~a~~~g 242 (625)
.+.+..+|+.++.-. .++||+.--. .+...++..+.+.|
T Consensus 59 Rp~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~~~~~~~~~~~l~~~g 105 (167)
T 3guv_A 59 RIQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYG 105 (167)
T ss_dssp CHHHHHHHHHHHTCTTCCSEEEESCGGGTCSSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCCccEEEEEeCchhcCCHHHHHHHHHHHHHCC
Confidence 455666666666543 4555553221 34444555555544
No 331
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=25.88 E-value=75 Score=26.85 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEE
Q 006916 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 225 (625)
Q Consensus 146 ~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~ 225 (625)
.++ .....++++-+++.++ +|........+.+.+.+...|+++.. ++ .++....+++-+ .+.++++++
T Consensus 18 HGQ-~~~W~k~~~~~~IiVv-nD~vA~D~~~k~~lk~A~P~gvk~~i---~s------ve~ai~~~~~~~-~~~~v~il~ 85 (163)
T 3p3v_A 18 HGQ-GQLWVKFLNCNTVIVA-NDAVSEDKIQQSLMKTVIPSSIAIRF---FS------IQKVIDIIHKAS-PAQSIFIVV 85 (163)
T ss_dssp GST-HHHHHHHTTCSEEEEE-CHHHHHCHHHHHHHGGGSCTTSEEEE---EC------HHHHHHHGGGCC-TTCEEEEEE
T ss_pred hhh-hhhhhhhcCCCEEEEE-cccccCCHHHHHHHHhhCCCCceEEE---EE------HHHHHHHHhccC-CCceEEEEE
Confidence 356 7888999999999655 44433334455555555556777653 22 334434443333 467899999
Q ss_pred cchhhHHHHHH
Q 006916 226 GYSRTGLMVFD 236 (625)
Q Consensus 226 ~~~~~~~~il~ 236 (625)
-++.++..+++
T Consensus 86 k~p~d~~~lv~ 96 (163)
T 3p3v_A 86 KDLQDAKLLVE 96 (163)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99998887753
No 332
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=25.55 E-value=1.4e+02 Score=29.09 Aligned_cols=82 Identities=11% Similarity=0.077 Sum_probs=51.4
Q ss_pred HHHHHHHHcCC---cEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCC---ceEE
Q 006916 149 AIAEMVSYFGW---GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME---ARVI 222 (625)
Q Consensus 149 al~~ll~~~~W---~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~---~~vI 222 (625)
.+.++++.++. +++.+|++..... ..+.+.+++.|+.+.....+... .+.+.+.+.++.+++.+ +++|
T Consensus 40 ~l~~~l~~~g~~~~~~~liVtd~~~~~----~~l~~~L~~~g~~~~~f~~v~~~--pt~~~v~~~~~~~~~~~~~~~D~I 113 (375)
T 3rf7_A 40 QLDTVLEQERTDANDFVVFLVDDVHQH----KPLAARVPNKAHDLVIYVNVDDE--PTTVQVDELTAQVKAFNTKLPVSV 113 (375)
T ss_dssp GHHHHHHTTCCSTTCCEEEEEEGGGTT----SHHHHHSCCCTTSEEEEECCSSC--CBHHHHHHHHHHHHHHCSSCCSEE
T ss_pred HHHHHHHHhcccCCCeEEEEECchhhh----hHHHHHHHhcCCeEEEEeCCCCC--CCHHHHHHHHHHHHHhCCCCCCEE
Confidence 36677888763 7787787543222 13666777777766433334433 55677778888887766 8999
Q ss_pred EEEcchh--hHHHHHH
Q 006916 223 VVHGYSR--TGLMVFD 236 (625)
Q Consensus 223 vl~~~~~--~~~~il~ 236 (625)
|-.+.+. ++..++.
T Consensus 114 IavGGGS~iD~AK~iA 129 (375)
T 3rf7_A 114 VGLGGGSTMDLAKAVS 129 (375)
T ss_dssp EEEESHHHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHH
Confidence 8876663 4444443
No 333
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=25.55 E-value=93 Score=29.25 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=41.9
Q ss_pred HHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccccceE-eccccc
Q 006916 493 DVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVD-FTQPYI 558 (625)
Q Consensus 493 dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~~R~~~vd-fs~p~~ 558 (625)
...+++.++.|=++++++.+.+ . =|+-..+++.|..|.+||+.........+...+. |+.||.
T Consensus 22 ~fa~~v~e~s~G~i~i~~~~~g--~-Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPfl 85 (301)
T 2pfy_A 22 QFADEVKAATAGALEIKVQSNS--T-LLKRPEVKRGVQQGVVQIGEVLVSALGNEDPLFEIDSVPFL 85 (301)
T ss_dssp HHHHHHHHHTTTSEEEEEECTT--S-SSCGGGHHHHHHHTSSSEEEEEGGGGTTTCGGGGGGGSTTT
T ss_pred HHHHHHHHHcCCeEEEEEccch--h-hCChHHHHHHHHCCCeeeehhhhhhhhccCcccccccCCcc
Confidence 5667788888878666666531 1 1456899999999999999877655444433322 455664
No 334
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=25.37 E-value=56 Score=31.91 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 006916 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (625)
Q Consensus 148 ~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 227 (625)
+.+.++++.+|.+++.||++....+ ..+.+.+.++ -.+.+.. +.+. .+.+...+.++.+++.++|+||-.+.
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~---~~~~f~~-v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 97 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE---VAIWHDE-VVMH--VPIEVAERARAVATDNEIDLLVCVGG 97 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC---CSEEECC-CCTT--CBHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC---CCEEEcc-eecC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4567888999999998887654322 2333433333 1223322 2222 45777888888888899999888766
Q ss_pred hh--hHHHHH
Q 006916 228 SR--TGLMVF 235 (625)
Q Consensus 228 ~~--~~~~il 235 (625)
+. ++..++
T Consensus 98 Gs~iD~aK~i 107 (364)
T 3iv7_A 98 GSTIGLAKAI 107 (364)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 63 344444
No 335
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=25.11 E-value=1e+02 Score=28.46 Aligned_cols=78 Identities=3% Similarity=-0.119 Sum_probs=45.1
Q ss_pred cEEEEEEec------CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHH
Q 006916 160 GEVIAIFND------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLM 233 (625)
Q Consensus 160 ~~v~ii~~d------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~ 233 (625)
+.|+++..+ +.|.....+.+.+.+++.|..+.... .. .+...-...++.+...+.+.||+....... .
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~ 78 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFP---FS--EDRSQIDIYRDLIRSGNVDGFVLSSINYND-P 78 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECC---CC--SSTTCCHHHHHHHHTTCCSEEEECSCCTTC-H
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEe---CC--CchHHHHHHHHHHHcCCCCEEEEeecCCCc-H
Confidence 356776644 34555677888888888888775421 11 112222345666777788888876533221 3
Q ss_pred HHHHHHHcCC
Q 006916 234 VFDVAQRLGM 243 (625)
Q Consensus 234 il~~a~~~g~ 243 (625)
.++.+.+.++
T Consensus 79 ~~~~l~~~~i 88 (287)
T 3bbl_A 79 RVQFLLKQKF 88 (287)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 4555555553
No 336
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=24.89 E-value=1.3e+02 Score=28.79 Aligned_cols=76 Identities=5% Similarity=-0.021 Sum_probs=44.6
Q ss_pred eeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeee-eecccccceE---ecccccccce
Q 006916 487 VHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIA-IVTNRTKAVD---FTQPYIESGL 562 (625)
Q Consensus 487 ~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~-~t~~R~~~vd---fs~p~~~~~~ 562 (625)
+.|+-+..-+-+-++-|.+ ++++.. +++..++..|..|++|+++++.. +...|.+-.+ +..-+.....
T Consensus 21 ~ap~~vA~~kG~f~e~GLd--Vei~~~------~~~~~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v~~~~~~~~~ 92 (342)
T 4esw_A 21 HIPVYLANIKGYFKDENLD--IAILEP------SNPSDVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSIGSLLDEPFT 92 (342)
T ss_dssp GHHHHHHHHTTHHHHTTCE--EEEEEE------SSGGGHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEEEEEECSCCE
T ss_pred hHHHHHHHHCCchHHcCCe--EEEEeC------CChHHHHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEEEEeccCCcc
Confidence 3455444444455666777 666664 45888999999999999987642 2333433322 2222334455
Q ss_pred EEEEecCC
Q 006916 563 VVVAPVRK 570 (625)
Q Consensus 563 ~~l~~~~~ 570 (625)
.++++...
T Consensus 93 ~~~~~~~~ 100 (342)
T 4esw_A 93 GICYLEGS 100 (342)
T ss_dssp EEEEETTS
T ss_pred cccccccc
Confidence 56665544
No 337
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=24.88 E-value=4.4e+02 Score=24.81 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=78.2
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecC--CCChHHHHHHHHHHHhcCcEEEE--cCCChH
Q 006916 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDA--KFNGFLSIMGALQFMETDTLAIV--GPQSAV 102 (625)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~--~~~~~~a~~~~~~l~~~~v~avi--G~~~s~ 102 (625)
-.|+.+|-..+ .+.+.+|+.|+.++ +|..+.+...++ +-.-.+.+.-+.+.++.-+.+|+ .+. ..
T Consensus 42 k~la~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~~~S~~~kgEsl~DTarvls~~~D~iviR~~~-~~ 110 (310)
T 3csu_A 42 KVIASCFFEAS---TRTRLSFETSMHRL-------GASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQ-EG 110 (310)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHTT-------TCEEEEESCC-----CCSHHHHHHHHHHHTTTCSEEEEEESS-TT
T ss_pred CEEEEEecCCC---ccHHHHHHHHHHHh-------CCeEEEeCCCccchhhccCCcHHHHHHHHHHhCCEEEEECCC-hh
Confidence 36788888765 47889999999885 455555543443 22334566666666766444444 332 23
Q ss_pred HHHHHHHhhhcC-CCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcCC---cEEEEEEecCCCCcch
Q 006916 103 MAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFGW---GEVIAIFNDDDQGRNG 175 (625)
Q Consensus 103 ~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~W---~~v~ii~~d~~~g~~~ 175 (625)
. +..+++.. ++|+|.-+..+ ...| .+++++++ +++|- .+|+++. |-.++ ..
T Consensus 111 ~---~~~la~~~~~vPVINag~G~-----~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vG-D~~~~-rv 168 (310)
T 3csu_A 111 A---ARLATEFSGNVPVLNAGDGS-----NQHP------------TQTLLDLFTIQETQGRLDNLHVAMVG-DLKYG-RT 168 (310)
T ss_dssp H---HHHHHHHCTTCCEEEEEETT-----SCCH------------HHHHHHHHHHHHHHSCSSSCEEEEES-CTTTC-HH
T ss_pred H---HHHHHHhcCCCCEEcCccCC-----CCCc------------hHHHHHHHHHHHHhCCcCCcEEEEEC-CCCCC-ch
Confidence 3 33444566 79999743322 1122 35666663 45552 5676665 32222 46
Q ss_pred HHHHHHHHhcc-ceEEEEe
Q 006916 176 VTALGDKLAEI-RCKISYK 193 (625)
Q Consensus 176 ~~~l~~~l~~~-g~~v~~~ 193 (625)
...+...+... |.++...
T Consensus 169 a~Sl~~~~~~~~g~~v~~~ 187 (310)
T 3csu_A 169 VHSLTQALAKFDGNRFYFI 187 (310)
T ss_dssp HHHHHHHHHTSSSCEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEE
Confidence 77788888888 8887653
No 338
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=24.84 E-value=2.5e+02 Score=21.90 Aligned_cols=55 Identities=7% Similarity=0.028 Sum_probs=38.1
Q ss_pred hHHHHHHHHhc-cceEEEEeeecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcc---hhhHHHHHHHHHH
Q 006916 175 GVTALGDKLAE-IRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY---SRTGLMVFDVAQR 240 (625)
Q Consensus 175 ~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~---~~~~~~il~~a~~ 240 (625)
..+.+...+++ .|..+.. . .+..+.++.+++ ..+++|++... ..+...++++.++
T Consensus 16 ~~~~l~~~L~~~~~~~v~~---~--------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 16 EREKTKIIFDNIGEYDFIE---V--------ENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp HHHHHHHHHHHHCCCEEEE---E--------CSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccEEE---E--------CCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence 56778888887 7776652 1 123456677777 78999998754 4466777888777
No 339
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=24.81 E-value=71 Score=29.06 Aligned_cols=74 Identities=9% Similarity=-0.073 Sum_probs=49.0
Q ss_pred eeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccc---cceEecccccccceEE
Q 006916 488 HGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT---KAVDFTQPYIESGLVV 564 (625)
Q Consensus 488 ~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~~R~---~~vdfs~p~~~~~~~~ 564 (625)
+|+--+|...+.+..|.+ +++.- +.-..++.++.+|.+|+.+..-....+.. ....=..+|+.-.+.+
T Consensus 18 s~ll~eL~~~Fek~~gv~--V~~~~-------~gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LVL 88 (242)
T 3kn3_A 18 TGLLDVLAPAYKKDTGVD--LKWVA-------VGTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFVI 88 (242)
T ss_dssp HTHHHHHHHHHHHHHSCE--EEEEE-------ECHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEEE
T ss_pred chHHHHHHHHHHHHhCCe--EEEEE-------cCcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEEE
Confidence 456667888888888877 44444 34778999999999999976443322221 1111235788888888
Q ss_pred EEecCC
Q 006916 565 VAPVRK 570 (625)
Q Consensus 565 l~~~~~ 570 (625)
++|..+
T Consensus 89 V~P~~~ 94 (242)
T 3kn3_A 89 IGNPSF 94 (242)
T ss_dssp EECTHH
T ss_pred EEeCCC
Confidence 887643
No 340
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=24.65 E-value=2e+02 Score=24.99 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=40.1
Q ss_pred EEEEEEecCCC--C---cchHHHHHHHHhccceE--EEEeeecCCCCCCChhHHHHHHHHHhcC-CceEEEEEcch
Q 006916 161 EVIAIFNDDDQ--G---RNGVTALGDKLAEIRCK--ISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGYS 228 (625)
Q Consensus 161 ~v~ii~~d~~~--g---~~~~~~l~~~l~~~g~~--v~~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~vIvl~~~~ 228 (625)
+++||...|+- | ......+.+.+++.|.+ +.....++.+ .+.+...++++.+. ++|+||..+..
T Consensus 5 rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd----~~~I~~al~~a~~~~~~DlVitTGGt 76 (195)
T 1di6_A 5 RIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDE----QAIIEQTLCELVDEMSCHLVLTTGGT 76 (195)
T ss_dssp EEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESC----HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 56777654432 1 12456778888888876 4444455533 67777888776653 68988887543
No 341
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=24.41 E-value=79 Score=29.76 Aligned_cols=63 Identities=6% Similarity=-0.049 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccccceE-eccccc
Q 006916 493 DVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVD-FTQPYI 558 (625)
Q Consensus 493 dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~~R~~~vd-fs~p~~ 558 (625)
.+.+.+.++.|=++++++.+.+ . -|.-..++..|..|.+||+.........+...+. |+.||.
T Consensus 21 ~fa~~v~~~s~G~i~i~~~~~g--~-Lg~~~~~~~~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf~ 84 (301)
T 2pfz_A 21 QFVKDVDSLSGGKLKITLHNNA--S-LYKAPEIKRAVQGNQAQIGEILLTNFANEDPVYELDGLPFL 84 (301)
T ss_dssp HHHHHHHHHHTTSCEEEEECTT--S-SSCGGGHHHHHHTTSSSEEEEEGGGGTTTCGGGTGGGSTTS
T ss_pred HHHHHHHHHcCCeEEEEEccCc--c-cCChHHHHHHHHCCceeeEechhhhccccCchhhhhcCCCC
Confidence 4566777777767667766632 1 1456899999999999999876654444432221 445553
No 342
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=24.21 E-value=1.9e+02 Score=26.59 Aligned_cols=71 Identities=6% Similarity=-0.149 Sum_probs=46.8
Q ss_pred HHHHcCCcEEEEEEec--CCCCc-chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006916 153 MVSYFGWGEVIAIFND--DDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 153 ll~~~~W~~v~ii~~d--~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
-|+.-.-+.|+++..+ +.|.. ...+.+.+.+++.|..+..... . .+...-...++.+...+.+.||+....
T Consensus 7 ~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 7 LIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT-G----GSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp -----CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred HHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3444455789999875 35666 7889999999999998865331 1 224445667777877888888876543
No 343
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=24.11 E-value=3e+02 Score=22.91 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=46.6
Q ss_pred EEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc
Q 006916 137 VQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM 216 (625)
Q Consensus 137 ~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~ 216 (625)
+-..+....-..++.++++.....++.|.+ +. ....+.+.+.+.+.|..+.. +... ....+-...++..++
T Consensus 12 ~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~-~~---~~~~~~l~~~L~~~~~~~~~---~~g~--~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 12 YVLCEHRKDKYQALCNIYGSITIGQAIIFC-QT---RRNAKWLTVEMIQDGHQVSL---LSGE--LTVEQRASIIQRFRD 82 (175)
T ss_dssp EEECSSHHHHHHHHHHHHTTSCCSEEEEEC-SC---HHHHHHHHHHHHTTTCCEEE---ECSS--CCHHHHHHHHHHHHT
T ss_pred EEEcCChHhHHHHHHHHHHhCCCCCEEEEE-CC---HHHHHHHHHHHHHcCCcEEE---EeCC--CCHHHHHHHHHHHHc
Confidence 334455554567888888888777775444 33 24577788888888776543 2222 224455566666665
Q ss_pred CCceEEE
Q 006916 217 MEARVIV 223 (625)
Q Consensus 217 ~~~~vIv 223 (625)
...+++|
T Consensus 83 g~~~vLv 89 (175)
T 2rb4_A 83 GKEKVLI 89 (175)
T ss_dssp TSCSEEE
T ss_pred CCCeEEE
Confidence 5555443
No 344
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=24.09 E-value=1.2e+02 Score=27.48 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=32.9
Q ss_pred HHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeee
Q 006916 492 IDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAI 543 (625)
Q Consensus 492 idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~ 543 (625)
.++++.-.+++|++++++..+ |..+...+..|+.||++.....
T Consensus 145 a~~iq~~l~~iGi~v~i~~~~---------~~~~~~~~~~~~~d~~~~~w~~ 187 (258)
T 3lvu_A 145 LEIYTRALERLGIAAQIEKVD---------NAQYTARVAELDFDLTPFRRDL 187 (258)
T ss_dssp HHHHHHHHHTTTCCCEEEEEC---------HHHHHHHHHTTCCSEEEEEEEC
T ss_pred HHHHHHHHHHcCCeeEEEecC---------HHHHHHHhccCCccEEEecCCC
Confidence 355666666799996666655 9999999999999999876543
No 345
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=24.05 E-value=2.4e+02 Score=21.45 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=43.6
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcCCCCCCeEEEe
Q 006916 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~g~~~~~~~~i~ 252 (625)
..+.+...+++.|..+.. .. +..+.++.+++..+++|++... ..+...++++.++..-...-.+.+.
T Consensus 15 ~~~~l~~~L~~~g~~v~~---~~--------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 83 (127)
T 3i42_A 15 AAETFKELLEMLGFQADY---VM--------SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAV 83 (127)
T ss_dssp HHHHHHHHHHHTTEEEEE---ES--------SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEE---EC--------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEE
Confidence 577788888888876542 11 2345566667778999999754 3567788888887531222334444
Q ss_pred eC
Q 006916 253 TT 254 (625)
Q Consensus 253 ~~ 254 (625)
++
T Consensus 84 s~ 85 (127)
T 3i42_A 84 SG 85 (127)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 346
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.00 E-value=2.5e+02 Score=21.72 Aligned_cols=57 Identities=18% Similarity=0.119 Sum_probs=36.0
Q ss_pred chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc-------hhhHHHHHHHHHHc
Q 006916 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-------SRTGLMVFDVAQRL 241 (625)
Q Consensus 174 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-------~~~~~~il~~a~~~ 241 (625)
...+.+...+++.|..+.. .. +..+.++.+++..+++|++... ......++++.++.
T Consensus 14 ~~~~~l~~~L~~~g~~v~~---~~--------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~ 77 (140)
T 2qr3_A 14 GVLTAVQLLLKNHFSKVIT---LS--------SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ 77 (140)
T ss_dssp HHHHHHHHHHTTTSSEEEE---EC--------CHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcEEEE---eC--------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhh
Confidence 3567788888888876652 11 2234555566667899998755 33556677777664
No 347
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=23.83 E-value=1.9e+02 Score=21.18 Aligned_cols=45 Identities=18% Similarity=0.378 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEE
Q 006916 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKI 190 (625)
Q Consensus 143 ~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v 190 (625)
+..+..-+.+++...|++-+-++.+.| ...++.|..-++..|.+|
T Consensus 60 dkqllkemlelisklgykvflllqdqd---eneleefkrkiesqgyev 104 (134)
T 2lci_A 60 DKQLLKEMLELISKLGYKVFLLLQDQD---ENELEEFKRKIESQGYEV 104 (134)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEECSC---HHHHHHHHHHHHTTTCEE
T ss_pred cHHHHHHHHHHHHHhCceeEEEeecCc---hhHHHHHHHHHHhCCeee
Confidence 334445555555556655554443222 124555555555555544
No 348
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=23.76 E-value=3.6e+02 Score=25.30 Aligned_cols=134 Identities=10% Similarity=0.090 Sum_probs=73.7
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEec-CCCChHHHHHHHHHHHhc--CcEEEEcCCChHH
Q 006916 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHD-AKFNGFLSIMGALQFMET--DTLAIVGPQSAVM 103 (625)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D-~~~~~~~a~~~~~~l~~~--~v~aviG~~~s~~ 103 (625)
-.|+.+|-..+ .+.+.+|+.|+.++ +|..+.+.-.+ +.-.-.+.+.-+.+.++. .++++=.+. ...
T Consensus 39 k~~~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~~s~~~kgEsl~DTarvls~~~D~iviR~~~-~~~ 107 (299)
T 1pg5_A 39 KTISIAFFEPS---TRTYLSFQKAIINL-------GGDVIGFSGEESTSVAKGENLADTIRMLNNYSDGIVMRHKY-DGA 107 (299)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEEECC-------CCCHHHHHHHHHHHCSEEEEEESS-BTH
T ss_pred CEEEEEecCCC---cchHHhHHHHHHHh-------CCEEEEeCCCCcccccCCCCHHHHHHHHHHhCCEEEEeCCC-hhH
Confidence 36888888765 47899999999995 45555554333 121111122222233333 333333333 233
Q ss_pred HHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHH---HHcC---CcEEEEEEecCCCCcchHH
Q 006916 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVT 177 (625)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll---~~~~---W~~v~ii~~d~~~g~~~~~ 177 (625)
+..+++..++|+|.-+-++ ...| .+++++++ +++| -.+|+++. |-.++ ....
T Consensus 108 ---~~~la~~~~vPVINaG~g~-----~~HP------------tQ~LaDl~Ti~e~~g~l~gl~va~vG-D~~~~-rva~ 165 (299)
T 1pg5_A 108 ---SRFASEISDIPVINAGDGK-----HEHP------------TQAVIDIYTINKHFNTIDGLVFALLG-DLKYA-RTVN 165 (299)
T ss_dssp ---HHHHHHHCSSCEEEEEETT-----TBCH------------HHHHHHHHHHHHHHSCSTTCEEEEEE-CCSSC-HHHH
T ss_pred ---HHHHHHhCCCCEEeCCCCC-----CcCc------------HHHHHHHHHHHHHhCCcCCcEEEEEC-CCCCC-chHH
Confidence 3444556789999743332 1122 35666663 4555 25787776 33233 3677
Q ss_pred HHHHHHhcc-ceEEEEe
Q 006916 178 ALGDKLAEI-RCKISYK 193 (625)
Q Consensus 178 ~l~~~l~~~-g~~v~~~ 193 (625)
.+...+... |.++...
T Consensus 166 Sl~~~~~~~~g~~v~~~ 182 (299)
T 1pg5_A 166 SLLRILTRFRPKLVYLI 182 (299)
T ss_dssp HHHHHGGGSCCSEEEEE
T ss_pred HHHHHHHhCCCCEEEEE
Confidence 788888888 8887653
No 349
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=23.47 E-value=4.6e+02 Score=24.54 Aligned_cols=145 Identities=8% Similarity=-0.047 Sum_probs=84.8
Q ss_pred CChHHHHHHHHHHHhcCcEEE-Ec-CCCh-HHHHHHHHhhhcC-CCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHH
Q 006916 75 FNGFLSIMGALQFMETDTLAI-VG-PQSA-VMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAI 150 (625)
Q Consensus 75 ~~~~~a~~~~~~l~~~~v~av-iG-~~~s-~~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al 150 (625)
-.+..+.+.+.+++..++.++ +. +..+ .....+...++.. ++.+|.+.+. .+-... ....-..|..
T Consensus 79 vP~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~--Gii~p~-~~~~~~~~~~------- 148 (305)
T 2fp4_A 79 VPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCP--GVINPG-ECKIGIMPGH------- 148 (305)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSC--EEEETT-TEEEESSCGG-------
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCC--eEeccc-ccceeecccc-------
Confidence 345566667777787777653 33 3222 2334678888888 9998865442 221110 1111122221
Q ss_pred HHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCC-hhHHHHHHHHHh-cCCceEEEEEcch
Q 006916 151 AEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVT-ETDVRNELVKVR-MMEARVIVVHGYS 228 (625)
Q Consensus 151 ~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~-~~~~~~~l~~i~-~~~~~vIvl~~~~ 228 (625)
.+.--+|++|.+... ....+...+.+.|+-+.....+-.. .. ..++.+.|+.+. +.++++|+++...
T Consensus 149 -----~~~~G~va~vSqSG~----l~~~~~~~~~~~g~G~S~~vs~G~~--~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~ 217 (305)
T 2fp4_A 149 -----IHKKGRIGIVSRSGT----LTYEAVHQTTQVGLGQSLCVGIGGD--PFNGTDFTDCLEIFLNDPATEGIILIGEI 217 (305)
T ss_dssp -----GCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCSS--SSCSCCHHHHHHHHHHCTTCCEEEEEEES
T ss_pred -----CCCCCCEEEEecchH----HHHHHHHHHHhcCCCeeEEeccCCC--cCCCCCHHHHHHHHhcCCCCcEEEEEEec
Confidence 133467998886543 4455666777777766554444322 21 345667777765 4678999999875
Q ss_pred -----hhHHHHHHHHHH
Q 006916 229 -----RTGLMVFDVAQR 240 (625)
Q Consensus 229 -----~~~~~il~~a~~ 240 (625)
.+++.|++++.+
T Consensus 218 ~g~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 218 GGNAEENAAEFLKQHNS 234 (305)
T ss_dssp SSSHHHHHHHHHHHHSC
T ss_pred CCchhhHHHHHHHHHHH
Confidence 468899987654
No 350
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=23.44 E-value=1.9e+02 Score=26.36 Aligned_cols=77 Identities=8% Similarity=-0.009 Sum_probs=48.0
Q ss_pred CcEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHH
Q 006916 159 WGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 236 (625)
Q Consensus 159 W~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~ 236 (625)
=..|+++..+ +.|.....+.+++.+++.|..+.... .. .+...-...++.+...+.+.||+...... ...++
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~ 81 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCN---TE--SDLARSRSCLTLLSGKMVDGVITMDALSE-LPELQ 81 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CC--CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHH
Confidence 3578888863 44556677888888889998876532 11 22334456677777788898888654322 13344
Q ss_pred HHHHcC
Q 006916 237 VAQRLG 242 (625)
Q Consensus 237 ~a~~~g 242 (625)
.+. .+
T Consensus 82 ~l~-~~ 86 (285)
T 3c3k_A 82 NII-GA 86 (285)
T ss_dssp HHH-TT
T ss_pred HHh-cC
Confidence 444 44
No 351
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=23.43 E-value=1e+02 Score=29.13 Aligned_cols=83 Identities=10% Similarity=-0.070 Sum_probs=45.6
Q ss_pred eeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHH--HHHHcCccc---EEEeeee-e-ecccccceEe------c-
Q 006916 489 GYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELI--NQITTGVFD---AAVGDIA-I-VTNRTKAVDF------T- 554 (625)
Q Consensus 489 G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~--~~l~~~~~D---~~~~~~~-~-t~~R~~~vdf------s- 554 (625)
-+.-.|.+.+.+.||.+ +..... ....|.+ ..+.+++.| +.++... + ++.+...+.| +
T Consensus 24 ~~aR~la~~l~~~lg~~--vvV~n~------~Ga~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~yd~~~d~~p 95 (301)
T 2qpq_A 24 MLARLIGNYLTESLGQT--AVVENR------PGASGNVGARLVADRAPDGYSLLMVNSSFAVNPGVFRNLPFDPKKDFAA 95 (301)
T ss_dssp HHHHHHHHHHHHGGGSC--EEEEEC------CTGGGHHHHHHHHTSCSSSSEEEEEETHHHHHHHHCTTCSSCTTTTEEE
T ss_pred HHHHHHHHHHHHHhCCC--EEEEEC------CChhHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHhccCCCCCchhcchh
Confidence 44446777788888887 544442 1266777 468888888 7665321 1 3333333333 2
Q ss_pred -ccccccceEEEEecCCCCcCcchhc
Q 006916 555 -QPYIESGLVVVAPVRKLNSSAWAFL 579 (625)
Q Consensus 555 -~p~~~~~~~~l~~~~~~~~~~~~~l 579 (625)
..+......++++....-.++-.++
T Consensus 96 v~~~~~~~~~lvv~~~s~~~sl~dL~ 121 (301)
T 2qpq_A 96 VINVAYVPSVFVVPAGSKYKTLGELM 121 (301)
T ss_dssp EEEEEEEEEEEEEETTCSCCSHHHHH
T ss_pred hhehhcCCeEEEEeCCCCCCCHHHHH
Confidence 1234456677776554333343343
No 352
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=23.08 E-value=4.2e+02 Score=24.04 Aligned_cols=83 Identities=13% Similarity=0.045 Sum_probs=52.9
Q ss_pred cEEEEEEecCCCCcchHHHHHHHHhccceEEEEe-eecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch----hhHHHH
Q 006916 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYK-SALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMV 234 (625)
Q Consensus 160 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~-~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~----~~~~~i 234 (625)
.+|.+.....+.-.-+...+...++..|++|.+- ...|. + ..++.+++.++++|.+.+.. ..+..+
T Consensus 124 ~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~------e---~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~ 194 (258)
T 2i2x_B 124 GTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPA------E---EVLAAVQKEKPIMLTGTALMTTTMYAFKEV 194 (258)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCS------H---HHHHHHHHHCCSEEEEECCCTTTTTHHHHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCH------H---HHHHHHHHcCCCEEEEEeeccCCHHHHHHH
Confidence 4666666555555566788888889999988643 23432 2 34555566678998887632 456777
Q ss_pred HHHHHHcCCCCCCeEEEee
Q 006916 235 FDVAQRLGMMDSGYVWIAT 253 (625)
Q Consensus 235 l~~a~~~g~~~~~~~~i~~ 253 (625)
+++.++.+.. -.++++.
T Consensus 195 i~~l~~~~~~--~~v~vGG 211 (258)
T 2i2x_B 195 NDMLLENGIK--IPFACGG 211 (258)
T ss_dssp HHHHHTTTCC--CCEEEES
T ss_pred HHHHHhcCCC--CcEEEEC
Confidence 7788776643 3345543
No 353
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=22.87 E-value=2.7e+02 Score=21.55 Aligned_cols=57 Identities=14% Similarity=0.030 Sum_probs=35.3
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 006916 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 242 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~g 242 (625)
..+.+...+++.+..+... . +..+.++.+++..+++|++... ..+...++++.++..
T Consensus 19 ~~~~l~~~L~~~~~~v~~~---~--------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (137)
T 3hdg_A 19 AREWLSTIISNHFPEVWSA---G--------DGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGG 77 (137)
T ss_dssp HHHHHHHHHHTTCSCEEEE---S--------SHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCcEEEEE---C--------CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 5677778887766554321 1 2234455555567899998654 345677777777654
No 354
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=22.69 E-value=72 Score=31.06 Aligned_cols=62 Identities=6% Similarity=-0.012 Sum_probs=42.5
Q ss_pred HHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccccceEe--cccc
Q 006916 493 DVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDF--TQPY 557 (625)
Q Consensus 493 dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~~R~~~vdf--s~p~ 557 (625)
.+.+.+.+..|-++++++.+.+ .-|....+++.|..|.+||+.........+...+.+ +.||
T Consensus 53 ~fa~~v~e~s~G~v~i~~~~~g---~Lg~~~~~~eav~~G~iD~~~~~~~~~~~~~p~~~~~~~lPf 116 (365)
T 2hzl_A 53 VLSKMLSEATDGNFQIQVFSAG---ELVPGLQAADAVTEGTVECCHTVGYYYWGKDPTFALAAAVPF 116 (365)
T ss_dssp HHHHHHHHHTTTSSEEEEECTT---TSSCGGGHHHHHHTTSSSEEEECGGGGTTTCTHHHHTTCCTT
T ss_pred HHHHHHHHhcCCeEEEEEecCC---cccCHHHHHHHHHcCccceeecchhhhcccChhHhhhhcCCC
Confidence 4667788888877667776631 124678999999999999998776555555444432 3565
No 355
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=22.51 E-value=1.4e+02 Score=26.18 Aligned_cols=84 Identities=17% Similarity=0.123 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEE
Q 006916 148 SAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 225 (625)
Q Consensus 148 ~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~ 225 (625)
..+.+++...+-++|++|-.... ......+.+++.+++.|.++... .... .+.+++ .+.++ +++.|++.
T Consensus 16 ~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~---~i~~-~~~~~~---~~~l~--~ad~I~l~ 86 (206)
T 3l4e_A 16 PLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEEL---DIAT-ESLGEI---TTKLR--KNDFIYVT 86 (206)
T ss_dssp HHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEEC---CTTT-SCHHHH---HHHHH--HSSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEE---EecC-CChHHH---HHHHH--hCCEEEEC
Confidence 33444544444589988853211 11346788999999999876532 2110 123343 33444 35777775
Q ss_pred cchhhHHHHHHHHHHcC
Q 006916 226 GYSRTGLMVFDVAQRLG 242 (625)
Q Consensus 226 ~~~~~~~~il~~a~~~g 242 (625)
+ + +...+++..++.|
T Consensus 87 G-G-~~~~l~~~L~~~g 101 (206)
T 3l4e_A 87 G-G-NTFFLLQELKRTG 101 (206)
T ss_dssp C-S-CHHHHHHHHHHHT
T ss_pred C-C-CHHHHHHHHHHCC
Confidence 5 2 2234444444443
No 356
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=22.51 E-value=2.8e+02 Score=21.69 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=37.6
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHc
Q 006916 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRL 241 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~ 241 (625)
..+.+...+++.|....... . .+..+.++.++...+++||+... ..+...++++.++.
T Consensus 17 ~~~~l~~~L~~~~~~~~v~~-~--------~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~ 76 (144)
T 3kht_A 17 DIALIRRVLDRKDIHCQLEF-V--------DNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKP 76 (144)
T ss_dssp HHHHHHHHHHHTTCCEEEEE-E--------SSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSS
T ss_pred HHHHHHHHHHhcCCCeeEEE-E--------CCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 56778888888776522111 1 13345667777788999998754 34567778777763
No 357
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=22.27 E-value=1.5e+02 Score=27.82 Aligned_cols=52 Identities=4% Similarity=-0.109 Sum_probs=34.2
Q ss_pred EEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEE
Q 006916 164 AIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 225 (625)
Q Consensus 164 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~ 225 (625)
+|...+.|+ ...++.|++........ ...+..++..+.+.+++.+.++|+.-
T Consensus 193 ~v~~H~af~--------Yf~~~yGl~~~~~~~~~--~eps~~~l~~l~~~ik~~~v~~If~e 244 (291)
T 1pq4_A 193 FIVFHPSWA--------YFARDYNLVQIPIEVEG--QEPSAQELKQLIDTAKENNLTMVFGE 244 (291)
T ss_dssp EEESSCCCH--------HHHHHTTCEEEESCBTT--BCCCHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEECCchH--------HHHHHCCCEEeecccCC--CCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 455556554 34456677766543322 22557888889999999889888874
No 358
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=22.17 E-value=3.4e+02 Score=25.34 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=46.7
Q ss_pred CcEEEEEEecCCCCc----chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHH
Q 006916 159 WGEVIAIFNDDDQGR----NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMV 234 (625)
Q Consensus 159 W~~v~ii~~d~~~g~----~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~i 234 (625)
-+++.+|+.. ..|. ...+.+.+.+++.|+.+....+-. ..+...+.+++.+ +.+.||+.+.......+
T Consensus 8 m~~~~vi~Np-~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~------~~~a~~~~~~~~~-~~d~vv~~GGDGTl~~v 79 (304)
T 3s40_A 8 FEKVLLIVNP-KAGQGDLHTNLTKIVPPLAAAFPDLHILHTKE------QGDATKYCQEFAS-KVDLIIVFGGDGTVFEC 79 (304)
T ss_dssp CSSEEEEECT-TCSSSCHHHHHHHHHHHHHHHCSEEEEEECCS------TTHHHHHHHHHTT-TCSEEEEEECHHHHHHH
T ss_pred CCEEEEEECc-ccCCCchHHHHHHHHHHHHHcCCeEEEEEccC------cchHHHHHHHhhc-CCCEEEEEccchHHHHH
Confidence 3567777743 2332 345677888888888776543222 3355566666653 67888877777677777
Q ss_pred HHHHHH
Q 006916 235 FDVAQR 240 (625)
Q Consensus 235 l~~a~~ 240 (625)
+..+..
T Consensus 80 ~~~l~~ 85 (304)
T 3s40_A 80 TNGLAP 85 (304)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 776654
No 359
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=22.12 E-value=1.3e+02 Score=28.86 Aligned_cols=78 Identities=12% Similarity=0.043 Sum_probs=48.4
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~ 237 (625)
+.|+++..+ +.|.....+.+.+.+++.|..+..... . .+.......++.+...+.+.||+...... ...++.
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 140 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS---N--EDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLED 140 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC---T--TCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHH
Confidence 468888864 345556778888888899988765321 1 22344456677777778888887654332 245556
Q ss_pred HHHcCC
Q 006916 238 AQRLGM 243 (625)
Q Consensus 238 a~~~g~ 243 (625)
+.+.++
T Consensus 141 l~~~~i 146 (348)
T 3bil_A 141 LQKQGM 146 (348)
T ss_dssp HHHC-C
T ss_pred HHhCCC
Confidence 665553
No 360
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=22.08 E-value=4e+02 Score=24.25 Aligned_cols=85 Identities=9% Similarity=0.028 Sum_probs=56.0
Q ss_pred HHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--
Q 006916 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-- 227 (625)
Q Consensus 150 l~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-- 227 (625)
++++.. -|-.-+++++ |..|.....+.+...-+..++.|.... +-. +.+ ++.+.+..+++.|++...
T Consensus 69 iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrKD-Fii------d~y--QI~eAr~~GADaILLI~a~L 137 (258)
T 4a29_A 69 YAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMSD-FIV------KES--QIDDAYNLGADTVLLIVKIL 137 (258)
T ss_dssp HHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEES-CCC------SHH--HHHHHHHHTCSEEEEEGGGS
T ss_pred HHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeecc-ccc------cHH--HHHHHHHcCCCeeehHHhhc
Confidence 344443 4778888887 555666777877776555566664332 221 122 455666679999988644
Q ss_pred -hhhHHHHHHHHHHcCCCC
Q 006916 228 -SRTGLMVFDVAQRLGMMD 245 (625)
Q Consensus 228 -~~~~~~il~~a~~~g~~~ 245 (625)
......+...|.++||..
T Consensus 138 ~~~~l~~l~~~A~~lGl~~ 156 (258)
T 4a29_A 138 TERELESLLEYARSYGMEP 156 (258)
T ss_dssp CHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHhHHH
Confidence 467889999999999863
No 361
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=22.02 E-value=82 Score=29.10 Aligned_cols=78 Identities=6% Similarity=0.036 Sum_probs=42.9
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~ 237 (625)
+.|+++..+ +.|.....+.+.+.+++.|..+... +... .+.......++.+...+.+.||+...... ...++.
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 83 (290)
T 3clk_A 9 NVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIV--YSGS--ADPEEQKHALLTAIERPVMGILLLSIALT-DDNLQL 83 (290)
T ss_dssp CEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEE--C------------CHHHHHHSSCCSEEEEESCC-----CHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE--eCCC--CCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHHHH
Confidence 578888753 4566667788888888899877643 0111 11222234566677778888887654322 234555
Q ss_pred HHHcC
Q 006916 238 AQRLG 242 (625)
Q Consensus 238 a~~~g 242 (625)
+.+.+
T Consensus 84 l~~~~ 88 (290)
T 3clk_A 84 LQSSD 88 (290)
T ss_dssp HHCC-
T ss_pred HHhCC
Confidence 55444
No 362
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=21.53 E-value=2.3e+02 Score=26.61 Aligned_cols=80 Identities=11% Similarity=-0.046 Sum_probs=50.1
Q ss_pred CCcEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHH
Q 006916 158 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 235 (625)
Q Consensus 158 ~W~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il 235 (625)
.=..|+++..+ +.|.....+.+.+.+++.|..+.... .. .+...-...++.+...+.+.||+...... ...+
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~ 135 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILAN---SD--NDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKIR 135 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEE---CC--CChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHH
Confidence 44678988864 44556677888888999998876532 11 22344456677777778898888653221 1244
Q ss_pred HHHHHcCC
Q 006916 236 DVAQRLGM 243 (625)
Q Consensus 236 ~~a~~~g~ 243 (625)
+.+.+.++
T Consensus 136 ~~l~~~~i 143 (332)
T 2o20_A 136 TSLKNSRT 143 (332)
T ss_dssp HHHHHHCC
T ss_pred HHHHhCCC
Confidence 55555553
No 363
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=21.27 E-value=3.3e+02 Score=22.31 Aligned_cols=75 Identities=13% Similarity=0.263 Sum_probs=47.2
Q ss_pred CchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCce
Q 006916 141 PNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEAR 220 (625)
Q Consensus 141 ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 220 (625)
+....-..++.+++++....++.|.+ +. ....+.+.+.+.+.|..+.. +... ....+-...++..++...+
T Consensus 12 ~~~~~K~~~l~~ll~~~~~~~~lVF~-~~---~~~~~~l~~~L~~~~~~~~~---~~~~--~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 12 EEEEYKYECLTDLYDSISVTQAVIFC-NT---RRKVEELTTKLRNDKFTVSA---IYSD--LPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp ESGGGHHHHHHHHHHHTTCSCEEEEE-SS---HHHHHHHHHHHHHTTCCEEE---ECTT--SCHHHHHHHHHHHHTTSCS
T ss_pred CcchhHHHHHHHHHHhCCCCCEEEEE-CC---HHHHHHHHHHHHHcCCCEEE---EECC--CCHHHHHHHHHHHHcCCCE
Confidence 33333467888999888777775555 32 24577888888887776543 2222 2345566677777766666
Q ss_pred EEEE
Q 006916 221 VIVV 224 (625)
Q Consensus 221 vIvl 224 (625)
++|.
T Consensus 83 vlv~ 86 (165)
T 1fuk_A 83 ILIS 86 (165)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6553
No 364
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=21.23 E-value=3.6e+02 Score=22.42 Aligned_cols=94 Identities=6% Similarity=-0.033 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeec--CCCCCCChhHHHHHHHHHh-cCCceEEEE
Q 006916 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSAL--PPDQSVTETDVRNELVKVR-MMEARVIVV 224 (625)
Q Consensus 148 ~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~~l~~i~-~~~~~vIvl 224 (625)
..+.+.+...+--..+..|.+ ..+......+.+.+.+.|+++...... +.+......|..-.+.-+. ....+.+++
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y~~-~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vL 114 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAYAI-ASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVIL 114 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEEEC-CCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEE
T ss_pred HHHHHHHhcCCEEEEEEEEEc-cCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEE
Confidence 345555555554444455633 223345677888999999987643211 1111122344433333332 135678888
Q ss_pred EcchhhHHHHHHHHHHc-C
Q 006916 225 HGYSRTGLMVFDVAQRL-G 242 (625)
Q Consensus 225 ~~~~~~~~~il~~a~~~-g 242 (625)
.+...+...+++.+++. |
T Consensus 115 vSgD~DF~plv~~lr~~~G 133 (165)
T 2qip_A 115 VSGDGDFSLLVERIQQRYN 133 (165)
T ss_dssp ECCCGGGHHHHHHHHHHHC
T ss_pred EECChhHHHHHHHHHHHcC
Confidence 77777888899999984 7
No 365
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=21.15 E-value=2.7e+02 Score=21.07 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=34.7
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHc
Q 006916 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRL 241 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~ 241 (625)
..+.+...+++.|..+.. .. +..+.++.+++..+++|++... ..+...++++.++.
T Consensus 14 ~~~~l~~~l~~~g~~v~~---~~--------~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~ 71 (122)
T 3gl9_A 14 LRKIVSFNLKKEGYEVIE---AE--------NGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEK 71 (122)
T ss_dssp HHHHHHHHHHHTTCEEEE---ES--------SHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHCCcEEEE---eC--------CHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhc
Confidence 456677777777776542 11 2334566667777888888643 34566677777654
No 366
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=21.07 E-value=1.3e+02 Score=27.72 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCcccEEEeeeeeecccccceEecccccccceEEEEecCC
Q 006916 522 YSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 522 ~~g~~~~l~~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~l~~~~~ 570 (625)
-.+.+.++.+|.+|++.++-.+..+..+.---..|+...+++++++..+
T Consensus 74 Sg~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vivn~~n 122 (279)
T 4gd5_A 74 SSAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALITHKNN 122 (279)
T ss_dssp HHHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEEEETTC
T ss_pred cHHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeeeeccCC
Confidence 6778899999999999877666544332222235777888899987655
No 367
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=20.94 E-value=3e+02 Score=21.37 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=36.5
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHH
Q 006916 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQR 240 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~ 240 (625)
..+.+...+++.|..+.. .. +..+.++.+++..+++|++... ..+...++++.++
T Consensus 18 ~~~~l~~~l~~~g~~v~~---~~--------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 74 (140)
T 3grc_A 18 IARLLNLMLEKGGFDSDM---VH--------SAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRR 74 (140)
T ss_dssp HHHHHHHHHHHTTCEEEE---EC--------SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCeEEE---EC--------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 567778888888877532 11 2345566667778899998644 3456677777776
No 368
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=20.94 E-value=1.4e+02 Score=17.45 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhhcccCCC
Q 006916 590 TGVFFLVVGTVVWILEHRLNDE 611 (625)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~ 611 (625)
.+++-++||+++-+++++.+..
T Consensus 7 ~IIaPivVGvvl~L~d~WLn~r 28 (33)
T 2kv5_A 7 LVIAPIFVGLVLEMISRVLDEE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHccc
Confidence 3456678999999999987754
No 369
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=20.93 E-value=4.6e+02 Score=23.76 Aligned_cols=87 Identities=14% Similarity=0.027 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 006916 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (625)
Q Consensus 148 ~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 227 (625)
..+++-....|-+.+.++.. +.+.....+.+...-+..++.|.....+ .+++ ++...+..+++.|++...
T Consensus 68 ~~~A~~~~~~GA~~isvlt~-~~~f~G~~~~l~~i~~~v~lPvl~kdfI-------~d~~--qi~~a~~~GAD~VlL~~~ 137 (254)
T 1vc4_A 68 VEAALAYARGGARAVSVLTE-PHRFGGSLLDLKRVREAVDLPLLRKDFV-------VDPF--MLEEARAFGASAALLIVA 137 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECC-CSSSCCCHHHHHHHHHHCCSCEEEESCC-------CSHH--HHHHHHHTTCSEEEEEHH
T ss_pred HHHHHHHHHcCCCEEEEecc-hhhhccCHHHHHHHHHhcCCCEEECCcC-------CCHH--HHHHHHHcCCCEEEECcc
Confidence 46677778889999998764 4444445566665555556665432211 1122 345567789999988643
Q ss_pred h--hhHHHHHHHHHHcCCC
Q 006916 228 S--RTGLMVFDVAQRLGMM 244 (625)
Q Consensus 228 ~--~~~~~il~~a~~~g~~ 244 (625)
. +.+..++..++++||.
T Consensus 138 ~l~~~l~~l~~~a~~lGl~ 156 (254)
T 1vc4_A 138 LLGELTGAYLEEARRLGLE 156 (254)
T ss_dssp HHGGGHHHHHHHHHHHTCE
T ss_pred chHHHHHHHHHHHHHCCCe
Confidence 2 6788888888888864
No 370
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=20.88 E-value=2.6e+02 Score=20.60 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=35.1
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch--hhHHHHHHHHHHcC
Q 006916 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQRLG 242 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~--~~~~~il~~a~~~g 242 (625)
..+.+...+++.|..+.. .. +....++.+++..+++|++.... .....++++.++..
T Consensus 13 ~~~~l~~~l~~~g~~v~~---~~--------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 13 AATVVCEMLTAAGFKVIW---LV--------DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp HHHHHHHHHHHTTCEEEE---ES--------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCcEEEE---ec--------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 567777888877876542 11 12334445555568888887543 35567777777653
No 371
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=20.86 E-value=2e+02 Score=26.22 Aligned_cols=64 Identities=6% Similarity=-0.099 Sum_probs=42.5
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
+.|+++..+ +.|.....+.+++.+++.|..+.... .. .+.......++.+...+.+.||+....
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AW--NNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc---CC--CChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 578888754 44555677888888888898776532 11 234445566777777788888876543
No 372
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=20.81 E-value=75 Score=30.26 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=46.4
Q ss_pred HHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccccce-EecccccccceEEEEecCC
Q 006916 493 DVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAV-DFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 493 dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~~R~~~v-dfs~p~~~~~~~~l~~~~~ 570 (625)
.+++.+.+.-+.+ +++.. +.-...+.++.+|++|+++..-.++.+..+.- --..|+...++.++++.+.
T Consensus 18 ~~~~~f~~~p~v~--i~v~~-------~gS~~~~~~l~~g~~Di~~~~~~~~~~e~~~~~l~~~~~~~d~lvvvv~~~~ 87 (321)
T 1ixh_A 18 KWADTYQKETGNK--VNYQG-------IGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAVNIPG 87 (321)
T ss_dssp HHHHHHHHHHCCE--EEEEE-------CCHHHHHHHHHTTCSSEEEESSCCCHHHHHHHTEEEEEEEEEEEEEEECCTT
T ss_pred HHHHHHHhcCCce--EEEec-------CCCHHHHHHHHcCCCcEEecccCCChhhHhhCCCEEeeeeeeeEEEEEeCCC
Confidence 4555565533455 55555 44788999999999999988776655432100 1246888889999997654
No 373
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=20.57 E-value=2.1e+02 Score=26.53 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=46.4
Q ss_pred eeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeecccccceEecccccccceEEEEec
Q 006916 489 GYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPV 568 (625)
Q Consensus 489 G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~l~~~ 568 (625)
.+-.+++..+.+... .+++++.. ++.+.++..|.+|++|+++..... ....+.+ .|.....+.++++.
T Consensus 103 ~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~---~~~~l~~-~~L~~~~~~~v~~~ 170 (312)
T 2h9b_A 103 GLLPRIIHLYRQAHP-NLRIELYE-------MGTKAQTEALKEGRIDAGFGRLKI---SDPAIKH-SLLRNERLMVAVHA 170 (312)
T ss_dssp TTHHHHHHHHHHTCT-TCEEEEEE-------CCHHHHHHHHHTTSCSEEEESSCC---CCTTEEE-EEEEEEEEEEEEET
T ss_pred hhHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEeCCC---CCCCceE-EEeecceEEEEEcC
Confidence 455678888887663 33477776 558899999999999999864322 1222332 46777777777765
Q ss_pred C
Q 006916 569 R 569 (625)
Q Consensus 569 ~ 569 (625)
.
T Consensus 171 ~ 171 (312)
T 2h9b_A 171 S 171 (312)
T ss_dssp T
T ss_pred C
Confidence 3
No 374
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=20.42 E-value=1.1e+02 Score=29.10 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=36.9
Q ss_pred ecCCCChHHHHHHH-HHHHhc-CcEEEEcCCChHHHHHHHHhhhcCCCcEE
Q 006916 71 HDAKFNGFLSIMGA-LQFMET-DTLAIVGPQSAVMAHVLSHLANELQVPLL 119 (625)
Q Consensus 71 ~D~~~~~~~a~~~~-~~l~~~-~v~aviG~~~s~~~~~va~~~~~~~iP~I 119 (625)
.|+=|+...--+.+ .++..+ .++.|||+..|+.+.-+.++|...+.|-.
T Consensus 205 ~ntIC~AT~~RQ~av~~lA~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty 255 (328)
T 3szu_A 205 KDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAF 255 (328)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHCSEEEEECCTTCHHHHHHHHHHHHTTCEEE
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCEEEEeCCCCCchHHHHHHHHHHhCCCEE
Confidence 57767665554444 444443 78899999999999999999999998743
No 375
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=20.41 E-value=2e+02 Score=26.35 Aligned_cols=81 Identities=10% Similarity=0.056 Sum_probs=45.1
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~ 236 (625)
+.|+++..+ +.|.....+.+.+.+++.|..+..... ... .+...-...++.+...+.+.||+.... ......++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFAS-PSE--GDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVA 78 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEEC-SST--TCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC-CCC--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 356777653 345556667777788888877654321 011 123333455666666778877775433 22234556
Q ss_pred HHHHcCC
Q 006916 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~g~ 243 (625)
++.+.++
T Consensus 79 ~~~~~~i 85 (288)
T 1gud_A 79 RAWKKGI 85 (288)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6665553
No 376
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=20.29 E-value=1.3e+02 Score=28.46 Aligned_cols=77 Identities=12% Similarity=-0.010 Sum_probs=47.4
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 006916 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~ 237 (625)
..|+++..+ +.|.....+.+.+.+++.|..+.... .. .+...-...++.+...+.+.||+....... ..++.
T Consensus 61 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~ 134 (332)
T 2hsg_A 61 TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN---SD--QNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEE 134 (332)
T ss_dssp CEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEE---CC--SHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEe---CC--CChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHH
Confidence 578888763 45666778888888888998876432 11 123334456777777788888876543222 34555
Q ss_pred HHHcC
Q 006916 238 AQRLG 242 (625)
Q Consensus 238 a~~~g 242 (625)
+.+.+
T Consensus 135 l~~~~ 139 (332)
T 2hsg_A 135 LKKSP 139 (332)
T ss_dssp HTTSS
T ss_pred HHhCC
Confidence 54444
No 377
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=20.10 E-value=2.5e+02 Score=22.44 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEE
Q 006916 144 LYLMSAIAEMVSYFGWGEVIAI 165 (625)
Q Consensus 144 ~~~~~al~~ll~~~~W~~v~ii 165 (625)
..|-..+.++....||.-+.+.
T Consensus 24 ~~Q~~~l~~~a~~~g~~~~~~~ 45 (138)
T 3bvp_A 24 DEQIDRLTKYAEAMGWQVSDTY 45 (138)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEE
Confidence 4466666666666777655433
No 378
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=20.08 E-value=2.5e+02 Score=27.30 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=56.6
Q ss_pred HHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCC-CCCChhHHHHHHHHHhcC---CceEEEEE
Q 006916 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPD-QSVTETDVRNELVKVRMM---EARVIVVH 225 (625)
Q Consensus 150 l~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~l~~i~~~---~~~vIvl~ 225 (625)
+.++++.. +++.||++..... ..+.+.+.+++.|+.+... .++.. ...+.+.+...++.+++. +.+.||-.
T Consensus 36 l~~~l~~~--~rvlIVtd~~v~~--~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIav 110 (368)
T 3qbe_A 36 LEDLLADR--HKVAVVHQPGLAE--TAEEIRKRLAGKGVDAHRI-EIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSL 110 (368)
T ss_dssp HHHHHTTC--SEEEEEECGGGHH--HHHHHHHHHHHTTCEEEEE-ECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred HHHHHHcC--CEEEEEECccHHH--HHHHHHHHHHhcCCcceEE-EeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEE
Confidence 45555553 8998888655433 3678888999889876432 23332 112345566666666543 46888877
Q ss_pred cch--hhHHHHHHHHHHcCCCCCCeEEEeeC
Q 006916 226 GYS--RTGLMVFDVAQRLGMMDSGYVWIATT 254 (625)
Q Consensus 226 ~~~--~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (625)
+.+ -++..++......| -.++-|-+.
T Consensus 111 GGGsv~D~ak~~Aa~~~rg---ip~i~IPTT 138 (368)
T 3qbe_A 111 GGGAATDVAGFAAATWLRG---VSIVHLPTT 138 (368)
T ss_dssp ESHHHHHHHHHHHHHGGGC---CEEEEEECS
T ss_pred CChHHHHHHHHHHHHhccC---CcEEEECCC
Confidence 665 35555555444444 344445444
Done!