BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006917
(625 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust.
Identities = 212/581 (36%), Positives = 316/581 (54%), Gaps = 48/581 (8%)
Query: 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEEN 87
++TSALPY N H G++ G L AD+F RY RL+G + ++ICGTDE+GT +A++E
Sbjct: 5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEG 64
Query: 88 CTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQ 147
+ ++I D+++ K + ISFD FGRT P ++ Q F K EN L + T+Q
Sbjct: 65 RSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQ 124
Query: 148 LYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKI 207
YC+ K FL DR V G+CP C + +GDQCE CG+ L P L +PRC +C
Sbjct: 125 AYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISF 182
Query: 208 RDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVP 267
RD+ H ++++ ++L+ +I K W N +W+++GL+ R ITRDL WG+P
Sbjct: 183 RDSAHYYIKMQDFAERLKRWIEKQ----PWKPNVKNMVLSWIEEGLEERAITRDLNWGIP 238
Query: 268 VP--HEKFKDKVFYVWFDAPIGYISITSCYTP------DWEEWWKNPE-NVALYQFMGKD 318
VP E K KV YVWF+APIGYISIT + +W+++W N + + F+GKD
Sbjct: 239 VPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKD 298
Query: 319 NAPFHTVMFPSTLLG--------TEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDV 370
N PFH + +P+ L+ E W L I EYL E KFS S+ ++ ++
Sbjct: 299 NIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEF 358
Query: 371 KDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGR 430
D PA+ RYYL T PE D+ F++ DF+ ++N EL+NNLGNFV+R L+F+ R
Sbjct: 359 LDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFV----NR 413
Query: 431 GYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQ 490
+ ++P+ + +L + E+I + E + + K L+ MS++S GN Y
Sbjct: 414 YFDGVVPE--RGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFD 471
Query: 491 ESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSD 550
Q WK ED+ + S+ +V L LLEPF+P S ++ LN+ D
Sbjct: 472 HKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNL---------D 522
Query: 551 ENGDLERARKPWEI--LPAGHRIGMSSPLFKELKDEDVRFF 589
E K WE LPAGH++ LFK++ D+ + +F
Sbjct: 523 EV-------KRWEFRELPAGHKVRKPEILFKKVTDDQIIYF 556
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 156/525 (29%), Positives = 252/525 (48%), Gaps = 32/525 (6%)
Query: 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAM 84
+ IL+T ALPY N HLG+++ + ADV+ RY R+RG+ +IC D +GT KA
Sbjct: 5 KKILVTCALPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 63
Query: 85 EENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYT 144
+ T +Q+ + H+ + FNIS+D + T + + ++ + I+ +L EN ++ T
Sbjct: 64 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 123
Query: 145 TQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQAT 204
QLY FL DR V+G+CP C GD CE CG +PTEL +P+ V AT
Sbjct: 124 ISQLYDPEKGMFLPDRFVKGTCPK--CKSPDQYGDNCEVCGATYSPTELIEPKSVVSGAT 181
Query: 205 PKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKW 264
P +RD++H F +LP + L+ + SG+ + W + GL+ I+RD +
Sbjct: 182 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 237
Query: 265 -GVPVPHEKFKDKVFYVWFDAPIGYISITSCY------TPDWEEWWKNPENVALYQFMGK 317
G +P+ K FYVW DAPIGY+ + ++E+WK LY F+GK
Sbjct: 238 FGFEIPNA--PGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 295
Query: 318 DNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPA 377
D FH++ +P+ L G+ N+ + V Y+ K SKS+G + + + + A
Sbjct: 296 DIVYFHSLFWPAMLEGS--NFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN-HFDA 352
Query: 378 EVWRYYLITN-RPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSII 436
+ RYY + D EDF ++N +++N + N +R FI K R G +
Sbjct: 353 DSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINK---RFDGVLA 409
Query: 437 PDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWK 496
+ L+ + AE I EA E + + +R M+++ N Y+ E W
Sbjct: 410 SELADPQLYKTFTDAAEVIG-------EAWESREFGKAVREIMALADLANRYVDEQAPWV 462
Query: 497 LYNEDQGSCSIVIRTSVG--LVYLLACLLEPFMPSFSLEVLKQLN 539
+ ++ + S+G L +L L+P +P + LN
Sbjct: 463 VAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN 507
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 239 bits (609), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 157/529 (29%), Positives = 253/529 (47%), Gaps = 40/529 (7%)
Query: 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAM 84
+ IL+T ALPY N HLG+++ + ADV+ RY R+RG+ +IC D +GT KA
Sbjct: 5 KKILVTCALPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 63
Query: 85 EENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYT 144
+ T +Q+ + H+ + FNIS+D + T + + ++ + I+ +L EN ++ T
Sbjct: 64 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 123
Query: 145 TQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQAT 204
QLY FL DR V+G+CP C GD CE CG +PTEL +P+ V AT
Sbjct: 124 ISQLYDPEKGMFLPDRFVKGTCPK--CKSPDQYGDNCEVCGATYSPTELIEPKSVVSGAT 181
Query: 205 PKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKW 264
P +RD++H F +LP + L+ + SG+ + W + GL+ I+RD +
Sbjct: 182 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 237
Query: 265 -GVPVPHEKFKDKVFYVWFDAPIGYISITSCY------TPDWEEWWKNPENVALYQFMGK 317
G +P+ K FYVW DAPIGY+ + ++E+WK LY F+GK
Sbjct: 238 FGFEIPNA--PGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 295
Query: 318 DNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPA 377
D FH++ +P+ L G+ N+ + V Y+ K SKS+G + + + + A
Sbjct: 296 DIVYFHSLFWPAMLEGS--NFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN-HFDA 352
Query: 378 EVWRYYLITN-RPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSII 436
+ RYY + D EDF ++N +++N + N +R FI K R G +
Sbjct: 353 DSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINK---RFDGVLA 409
Query: 437 PDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWK 496
+ L+ + AE I EA E + + +R M+++ N Y+ E W
Sbjct: 410 SELADPQLYKTFTDAAEVIG-------EAWESREFGKAVREIMALADLANRYVDEQAPWV 462
Query: 497 LYNED------QGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLN 539
+ ++ Q CS+ + L +L L+P +P + LN
Sbjct: 463 VAKQEGRDADLQAICSM----GINLFRVLMTYLKPVLPKLTERAEAFLN 507
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 239 bits (609), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 157/529 (29%), Positives = 253/529 (47%), Gaps = 40/529 (7%)
Query: 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAM 84
+ IL+T ALPY N HLG+++ + ADV+ RY R+RG+ +IC D +GT KA
Sbjct: 6 KKILVTCALPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 64
Query: 85 EENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYT 144
+ T +Q+ + H+ + FNIS+D + T + + ++ + I+ +L EN ++ T
Sbjct: 65 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 124
Query: 145 TQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQAT 204
QLY FL DR V+G+CP C GD CE CG +PTEL +P+ V AT
Sbjct: 125 ISQLYDPEKGMFLPDRFVKGTCPK--CKSPDQYGDNCEVCGATYSPTELIEPKSVVSGAT 182
Query: 205 PKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKW 264
P +RD++H F +LP + L+ + SG+ + W + GL+ I+RD +
Sbjct: 183 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 238
Query: 265 -GVPVPHEKFKDKVFYVWFDAPIGYISITSCY------TPDWEEWWKNPENVALYQFMGK 317
G +P+ K FYVW DAPIGY+ + ++E+WK LY F+GK
Sbjct: 239 FGFEIPNA--PGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 296
Query: 318 DNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPA 377
D FH++ +P+ L G+ N+ + V Y+ K SKS+G + + + + A
Sbjct: 297 DIVYFHSLFWPAMLEGS--NFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN-HFDA 353
Query: 378 EVWRYYLITN-RPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSII 436
+ RYY + D EDF ++N +++N + N +R FI K R G +
Sbjct: 354 DSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINK---RFDGVLA 410
Query: 437 PDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWK 496
+ L+ + AE I EA E + + +R M+++ N Y+ E W
Sbjct: 411 SELADPQLYKTFTDAAEVIG-------EAWESREFGKAVREIMALADLANRYVDEQAPWV 463
Query: 497 LYNED------QGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLN 539
+ ++ Q CS+ + L +L L+P +P + LN
Sbjct: 464 VAKQEGRDADLQAICSM----GINLFRVLMTYLKPVLPKLTERAEAFLN 508
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 156/525 (29%), Positives = 251/525 (47%), Gaps = 32/525 (6%)
Query: 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAM 84
+ IL+T ALPY N HLG+++ + ADV+ RY R+RG+ +IC D +GT KA
Sbjct: 5 KKILVTCALPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 63
Query: 85 EENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYT 144
+ T +Q+ + H+ + FNIS+D + T + + ++ + I+ +L EN ++ T
Sbjct: 64 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 123
Query: 145 TQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQAT 204
QLY FL DR V+G+CP C GD CE CG +PTEL +P+ V AT
Sbjct: 124 ISQLYDPEKGMFLPDRFVKGTCPK--CKSPDQYGDNCEVCGATYSPTELIEPKSVVSGAT 181
Query: 205 PKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKW 264
P +RD++H F +LP + L+ + SG+ + W + GL+ I+RD +
Sbjct: 182 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 237
Query: 265 -GVPVPHEKFKDKVFYVWFDAPIGYISITSCY------TPDWEEWWKNPENVALYQFMGK 317
G +P+ K FYVW DAPIGY+ + ++E+WK LY F+GK
Sbjct: 238 FGFEIPNA--PGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 295
Query: 318 DNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPA 377
D FH++ +P+ L G+ N+ + V Y+ K SKS+G + + + + A
Sbjct: 296 DIVYFHSLFWPAMLEGS--NFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN-HFDA 352
Query: 378 EVWRYYLITN-RPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSII 436
+ RYY + D EDF ++N +++N + N +R FI K R G +
Sbjct: 353 DSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINK---RFDGVLA 409
Query: 437 PDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWK 496
+ L+ + AE I EA E + + +R M+++ N Y+ E W
Sbjct: 410 SELADPALYKTFTDAAEVIG-------EAWESREFGKAVREIMALADLANRYVDEQAPWV 462
Query: 497 LYNEDQGSCSIVIRTSVG--LVYLLACLLEPFMPSFSLEVLKQLN 539
+ + + S+G L +L L+P +P + LN
Sbjct: 463 VAKQAGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN 507
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 229 bits (584), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 153/526 (29%), Positives = 249/526 (47%), Gaps = 32/526 (6%)
Query: 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAM 84
+ IL+T A PY N HLG+++ + ADV+ RY R+RG+ +IC D +GT KA
Sbjct: 18 KKILVTCASPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 76
Query: 85 EENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYT 144
+ T +Q+ + H+ + FNIS+D + T + + ++ + I+ +L EN ++ T
Sbjct: 77 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 136
Query: 145 TQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQAT 204
QLY FL DR V+G+CP C GD CE CG +PTEL +P+ V AT
Sbjct: 137 ISQLYDPEKGMFLPDRFVKGTCPK--CKSPDQYGDNCEVCGATYSPTELIEPKSVVSGAT 194
Query: 205 PKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKW 264
P +RD++H F +LP + L+ + SG+ + W + GL+ I+RD +
Sbjct: 195 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 250
Query: 265 -GVPVPHEKFKDKVFYVWFDAPIGYISITSCY------TPDWEEWWKNPENVALYQFMGK 317
G +P+ K FYVW DAPIG + + ++E+WK LY F+GK
Sbjct: 251 FGFEIPNA--PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 308
Query: 318 DNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPA 377
D F ++ +P+ L G+ N+ + V Y+ K SKS+G + + + + A
Sbjct: 309 DIVYFLSLFWPAMLEGS--NFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN-HFDA 365
Query: 378 EVWRYYLITN-RPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSII 436
+ RYY + D EDF ++N +++N + N +R FI K R G +
Sbjct: 366 DSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINK---RFDGVLA 422
Query: 437 PDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWK 496
+ L+ + AE I EA E + + +R M+++ N Y+ E W
Sbjct: 423 SELADPQLYKTFTDAAEVIG-------EAWESREFGKAVREIMALADLANRYVDEQAPWV 475
Query: 497 LYNEDQGSCSIVIRTSVG--LVYLLACLLEPFMPSFSLEVLKQLNV 540
+ ++ + S+G L +L L+P +P + LN
Sbjct: 476 VAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT 521
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 149/524 (28%), Positives = 234/524 (44%), Gaps = 72/524 (13%)
Query: 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAM 84
+ +T+ + YVN+VPHLG+ + +AD ARY RLR Y+ ++ GTDE+G + KA
Sbjct: 5 KKFYVTTPIYYVNDVPHLGHAYTTI-AADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAE 63
Query: 85 EENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENN--WLSE 142
E + +++ D+ K ++ + I + +F RT+ P + Q +F++ + +L E
Sbjct: 64 ELGISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGE 123
Query: 143 YTTQQLYCDTCKRFL--ADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKV 200
Y + YC C+ F A+ + +CP +KC + P+
Sbjct: 124 Y--EGWYCVGCEEFKSEAELAEDHTCPI-----------HQKKCEYIKEPS--------- 161
Query: 201 CQATPKIRDTDHLFLELPLIKDKLEEYINKMS--VSGSWSQNAIQGTYAWLKDGLKPRCI 258
F L +DKL E K + + +N I +++K GLK +
Sbjct: 162 ------------YFFRLSKYQDKLLELYEKNPEFIQPDYRRNEI---ISFVKQGLKDLSV 206
Query: 259 TR---DLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFM 315
TR +KWG+PVP + + YVWFDA YIS E +W P ++ L +
Sbjct: 207 TRPRSRVKWGIPVPFDP--EHTIYVWFDALFNYISALEDKV---EIYW--PADLHL---V 256
Query: 316 GKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNI 375
GKD FHTV +P+ L+ + L K + + E K SK+ G V +V
Sbjct: 257 GKDILRFHTVYWPAFLMSL--GYELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYG 314
Query: 376 PAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSI 435
EV RY+L+ P D F+ + ++N EL N +GN +RV++ K G G S
Sbjct: 315 LDEV-RYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLG-GEVSG 372
Query: 436 IPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFW 495
D A K+ E I N Y MEKV + + + +S N Y+ E Q W
Sbjct: 373 ARDEEYA------KIAQESIKN----YENYMEKVNFYKAIEEILKFTSYLNKYVDEKQPW 422
Query: 496 KLYNE-DQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQL 538
L E + V+ V +++L LL P P+ E L+ L
Sbjct: 423 ALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQML 466
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 147/542 (27%), Positives = 222/542 (40%), Gaps = 74/542 (13%)
Query: 23 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETK 82
G IT+A+ Y N VPH+G+ + + D AR+ RL GY+ Y+ GTD +G
Sbjct: 10 GSEPFYITTAIAYPNGVPHIGHAYEYI-ATDAIARFKRLDGYDVRYLTGTDVHGQKMAET 68
Query: 83 AMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSE 142
A +E ++ + + + + NISFD F RTS E +AI+K++ + +
Sbjct: 69 AAKEGIPAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYL 128
Query: 143 YTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQ 202
+ Y +RF + + E+ TE P +
Sbjct: 129 DAYKGWYSIRDERFFTE------------------NETTEQPDGTRIATETGAPVTWTEE 170
Query: 203 ATPKIRDTDHLFLELPLIKDKL----EEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCI 258
T F L D+L EE+ + +N I +++ GLK I
Sbjct: 171 QT--------YFFRLSAYTDRLLALYEEHPEFIGPDAR--RNEI---VSFVSGGLKDLSI 217
Query: 259 TRD-LKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWE-----EWWKNPENVALY 312
+R WGVPVP D V YVW DA Y+ T PD E +W A
Sbjct: 218 SRTTFDWGVPVPDHP--DHVMYVWVDALTNYL--TGVGFPDTESESFRRYWP-----ADL 268
Query: 313 QFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKD 372
+GKD FHTV +P+ L+ L K I +L K SKS G V ++ D
Sbjct: 269 HMIGKDIIRFHTVYWPAFLMSA--GLPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVD 326
Query: 373 TNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGY 432
T +V RY+L+ P D + + ++N +L N LGN R LS +AK
Sbjct: 327 TFGLDQV-RYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAK----NL 381
Query: 433 GSIIPD-----SPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNA 487
G+ +PD L + L E++ H D + AM L S+ N
Sbjct: 382 GAAVPDPGEFTDEDTALLAAADALLERVREHFD--VPAMH-----LALEAIWSVLGAANR 434
Query: 488 YLQESQFWKLYN----EDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTE 543
Y + W L EDQ V+ T++ +V + + LL+P MP + ++L L PT+
Sbjct: 435 YFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQPTD 494
Query: 544 TK 545
+
Sbjct: 495 ER 496
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 131/545 (24%), Positives = 219/545 (40%), Gaps = 89/545 (16%)
Query: 29 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENC 88
+T+ + YVN PHLG+ V+ AD AR+ RL GY ++ GTDE+G A
Sbjct: 7 VTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGE 65
Query: 89 TTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQL 148
+ D+ K ++ I++D+F RT+ + ++ Q + KK+ E + + L
Sbjct: 66 DPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGL 125
Query: 149 YCDTCKRFLADR-LVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKI 207
YC +C+RF ++ LVEG CP G P E
Sbjct: 126 YCVSCERFYTEKELVEGLCPIHG------------------RPVER-------------- 153
Query: 208 RDTDHLFLELPLIKDKLEEYI--NKMSVSGSWSQNAIQGTYAWLKDGLKPRCITR---DL 262
R + F + + L+EYI N + +N + A L + + I+R +
Sbjct: 154 RKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEV---LAMLAEPIGDLSISRPKSRV 210
Query: 263 KWGVPVPHEKFKDKVFYVWFDAPIGYISIT-----SCYTPDWEEWWKNPENVALYQFMGK 317
WG+P+P + ++ V YVWFDA + Y+S Y W W +GK
Sbjct: 211 PWGIPLPWD--ENHVTYVWFDALLNYVSALDYPEGEAYRTFWPHAW---------HLIGK 259
Query: 318 DNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKF----SKSKGVGVFGNDVKDT 373
D H V +P T++K + Y + G F K GN V
Sbjct: 260 DILKPHAVFWP----------TMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPF 309
Query: 374 NI----PAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAK-PP 428
+ + RYYL+ P DT + E + + +L ++LGN V R + + +
Sbjct: 310 ALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAE 369
Query: 429 GRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAY 488
GR IP+ + LA ++ + + +K L M+ N Y
Sbjct: 370 GR-----IPEPVAGEELAEGTGLAGRLRPLVRE-------LKFHVALEEAMAYVKALNRY 417
Query: 489 LQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSL 548
+ E + W+L+ ++ V+ V + + + LL P MP E+ + L + E +
Sbjct: 418 INEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEE 477
Query: 549 SDENG 553
++ G
Sbjct: 478 AERWG 482
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 130/545 (23%), Positives = 219/545 (40%), Gaps = 89/545 (16%)
Query: 29 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENC 88
+T+ + YVN PHLG+ V+ AD AR+ RL GY ++ GTDE+G A
Sbjct: 7 VTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGE 65
Query: 89 TTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQL 148
+ D+ K ++ I++D+F RT+ + ++ Q + KK+ E + + L
Sbjct: 66 DPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGL 125
Query: 149 YCDTCKRFLADR-LVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKI 207
YC +C+RF ++ LVEG CP G P E
Sbjct: 126 YCVSCERFYTEKELVEGLCPIHG------------------RPVER-------------- 153
Query: 208 RDTDHLFLELPLIKDKLEEYI--NKMSVSGSWSQNAIQGTYAWLKDGLKPRCITR---DL 262
R + F + + L+EYI N + +N + A L + + I+R +
Sbjct: 154 RKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEV---LAMLAEPIGDLSISRPKSRV 210
Query: 263 KWGVPVPHEKFKDKVFYVWFDAPIGYISIT-----SCYTPDWEEWWKNPENVALYQFMGK 317
WG+P+P + ++ V +VWFDA + Y+S Y W W +GK
Sbjct: 211 PWGIPLPWD--ENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAW---------HLIGK 259
Query: 318 DNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKF----SKSKGVGVFGNDVKDT 373
D H V +P T++K + Y + G F K GN V
Sbjct: 260 DILKPHAVFWP----------TMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPF 309
Query: 374 NI----PAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAK-PP 428
+ + RYYL+ P DT + E + + +L ++LGN V R + + +
Sbjct: 310 ALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAE 369
Query: 429 GRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAY 488
GR IP+ + LA ++ + + +K L M+ N Y
Sbjct: 370 GR-----IPEPVAGEELAEGTGLAGRLRPLVRE-------LKFHVALEEAMAYVKALNRY 417
Query: 489 LQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSL 548
+ E + W+L+ ++ V+ V + + + LL P MP E+ + L + E +
Sbjct: 418 INEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEE 477
Query: 549 SDENG 553
++ G
Sbjct: 478 AERWG 482
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 130/545 (23%), Positives = 218/545 (40%), Gaps = 89/545 (16%)
Query: 29 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENC 88
+T+ + YVN PHLG+ V+ AD AR+ RL GY ++ GTDE+G A
Sbjct: 7 VTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGE 65
Query: 89 TTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQL 148
+ D+ K ++ I++D+F RT+ + ++ Q + KK+ E + + L
Sbjct: 66 DPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGL 125
Query: 149 YCDTCKRFLADR-LVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKI 207
YC +C+RF ++ LVEG CP G P E
Sbjct: 126 YCVSCERFYTEKELVEGLCPIHG------------------RPVER-------------- 153
Query: 208 RDTDHLFLELPLIKDKLEEYI--NKMSVSGSWSQNAIQGTYAWLKDGLKPRCITR---DL 262
R + F + + L+EYI N + +N + A L + + I+R +
Sbjct: 154 RKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEV---LAMLAEPIGDLSISRPKSRV 210
Query: 263 KWGVPVPHEKFKDKVFYVWFDAPIGYISIT-----SCYTPDWEEWWKNPENVALYQFMGK 317
WG+P+P + ++ V VWFDA + Y+S Y W W +GK
Sbjct: 211 PWGIPLPWD--ENHVTAVWFDALLNYVSALDYPEGEAYRTFWPHAW---------HLIGK 259
Query: 318 DNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKF----SKSKGVGVFGNDVKDT 373
D H V +P T++K + Y + G F K GN V
Sbjct: 260 DILKPHAVFWP----------TMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPF 309
Query: 374 NI----PAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAK-PP 428
+ + RYYL+ P DT + E + + +L ++LGN V R + + +
Sbjct: 310 ALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAE 369
Query: 429 GRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAY 488
GR IP+ + LA ++ + + +K L M+ N Y
Sbjct: 370 GR-----IPEPVAGEELAEGTGLAGRLRPLVRE-------LKFHVALEEAMAYVKALNRY 417
Query: 489 LQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSL 548
+ E + W+L+ ++ V+ V + + + LL P MP E+ + L + E +
Sbjct: 418 INEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEE 477
Query: 549 SDENG 553
++ G
Sbjct: 478 AERWG 482
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 131/526 (24%), Positives = 223/526 (42%), Gaps = 60/526 (11%)
Query: 29 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENC 88
IT+A+ Y N PH+G+ + + D AR+ RL G + ++ GTDE+G A +E
Sbjct: 29 ITTAIAYPNGKPHIGHAYELI-ATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGI 87
Query: 89 TTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQL 148
T + + D+ + + + N S D++ RTS + + QAI++ ++ N + +
Sbjct: 88 TPRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGW 147
Query: 149 YCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIR 208
Y + + + E R D + G P E +
Sbjct: 148 YSVRDEAYYGEEETE------------VRADGV-RYGPQGTPVEWVE------------- 181
Query: 209 DTDHLFLELPLIKDKLEEYI--NKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRD-LKWG 265
+ F L +DKL + N + + +N I +++K GLK I+R WG
Sbjct: 182 -EESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEI---VSFVKSGLKDLSISRTTFDWG 237
Query: 266 VPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTV 325
+PVP ++ V YVW DA YI+ E W P N +GKD + FH V
Sbjct: 238 IPVPGDE--KHVMYVWVDALTNYITALGYPDTTDERWAYWPANA---HIIGKDISRFHAV 292
Query: 326 MFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVW----- 380
+P+ L+ + L K + +L K SKS G +V D E +
Sbjct: 293 YWPAFLMSAQ--LPLPKRVFAHGFLFNRGEKMSKSVG------NVIDPFELVERYGLDQL 344
Query: 381 RYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKP-PGRGYGSIIPDS 439
RY+L+ P D ++ E + N +L N+LGN R LS IAK G+ +P
Sbjct: 345 RYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGK-----VP-Q 398
Query: 440 PKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYN 499
P A + K + ++ ++ +AM+ L L ++ +E N Y + W L
Sbjct: 399 PGA-FSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRK 457
Query: 500 EDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETK 545
D V+ + ++ + +++PF+P + ++L L VP + +
Sbjct: 458 TDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVPADKR 503
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 120/547 (21%), Positives = 223/547 (40%), Gaps = 66/547 (12%)
Query: 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKA 83
++ T+ + YVN PH+G++ ++ DV RY R++G + GTDE+G A
Sbjct: 25 QKVFFATTPIYYVNASPHIGHVYSTLI-VDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAA 83
Query: 84 MEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENN--WLS 141
++ + + K + N + F RT+ P ++ Q I+KKL +L
Sbjct: 84 AKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLG 143
Query: 142 EYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVC 201
+Y + Y + + FL + V D ++ GK CKV
Sbjct: 144 KY--EGWYSVSDESFLTAQNV---------------ADGVDRDGK----------PCKVS 176
Query: 202 QATPKIR---DTDHLFLELPLIKDKLEEYINKMS--VSGSWSQNAIQGTYAWLKDGLKPR 256
+ + + ++ L +++L +Y + + + + + T ++ GL
Sbjct: 177 LESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKT---VEKGLFDL 233
Query: 257 CITRD----LKWGVPVPHEKFKDKVFYVWFDAPIGYIS--ITSCYTPDWEEWWKNPENV- 309
I+R + W +PVP ++ YVW DA Y + +T T E ++ +
Sbjct: 234 SISRKRESVMNWSIPVPGDE--RHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALN 291
Query: 310 ---ALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVF 366
A +GKD FH + +P+ L+ E L + + + + K SKS G F
Sbjct: 292 RWPADVHVVGKDILKFHAIYWPAFLMSAE--LPLPERLVSHGWWTKDHKKISKSLG-NAF 348
Query: 367 GNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAK 426
K + +Y+L+ D ++ ++ A+LN EL + LGN V+R ++
Sbjct: 349 DPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVA---- 404
Query: 427 PPGRGYGSIIPDSPKADLHPSTKMLAEKISN---HIDQYIEAMEKVKLKQGLRIGMSISS 483
P + P+ A+ S K L ++N +D Y + ++ L +
Sbjct: 405 -PKINVNGMWPEP--AEYSESDKTLIASLNNLAGTVDHYYCLPD---IQHALIAIFDVLR 458
Query: 484 EGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTE 543
NAY+ E+ WKL D V+ ++ + + L+P MP + E++ L VP
Sbjct: 459 SLNAYVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEA 518
Query: 544 TKFSLSD 550
+ + +
Sbjct: 519 ARVGMEN 525
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 124/539 (23%), Positives = 209/539 (38%), Gaps = 67/539 (12%)
Query: 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKA 83
++ +TS + YVN PH+G++ +++ DV RY R++G + GTDE+G A
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVYSTLIT-DVIGRYHRVKGERVFALTGTDEHGQKVAEAA 66
Query: 84 MEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENN--WLS 141
++ + K + + S D F RT+ Q + + ++ KL + +L
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 142 EYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVC 201
Y + Y + + FL + + D +K G NP CKV
Sbjct: 127 RY--EGWYSISDESFLTPQNIT---------------DGVDKDG---NP-------CKVS 159
Query: 202 ----QATPKIRDTDHLFLELPLIKDKLEEYINKMS---VSGSWSQNAIQGTYAWLKDGLK 254
+ + +++F L +++L E+ + V + I+ L D
Sbjct: 160 LESGHVVTWVSEENYMF-RLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSV 218
Query: 255 PRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITS----------CYTPDWEEWWK 304
R W +PVP D YVW DA Y++ + D+ E +
Sbjct: 219 SRARATLHNWAIPVPGNP--DHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELER 276
Query: 305 NPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVG 364
P +V +GKD FH + +P+ LL L K I + + K SKS G
Sbjct: 277 FPADV---HVIGKDILKFHAIYWPAFLLSA--GLPLPKKIVAHGWWTKDRKKISKSLG-N 330
Query: 365 VFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFI 424
VF K + +Y+L+ D ++ ++ A+LN EL + LGN V R S
Sbjct: 331 VFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAK 390
Query: 425 AKPPGRGYGSIIPDSPKA--DLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSIS 482
G SP A + S L + + D Y + +++ + +
Sbjct: 391 INVNGEW------PSPAAYTEEDESLIQLIKDLPGTADHYYLIPD---IQKAIIAVFDVL 441
Query: 483 SEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVP 541
NAY+ + WKL D V+ ++ V + LL P +P S+ + L VP
Sbjct: 442 RAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVP 500
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 124/539 (23%), Positives = 209/539 (38%), Gaps = 67/539 (12%)
Query: 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKA 83
++ +TS + YVN PH+G++ +++ DV RY R++G + GTDE+G A
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVYSTLIT-DVIGRYHRVKGERVFALTGTDEHGQKVAEAA 66
Query: 84 MEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENN--WLS 141
++ + K + + S D F RT+ Q + + ++ KL + +L
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 142 EYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVC 201
Y + Y + + FL + + D +K G NP CKV
Sbjct: 127 RY--EGWYSISDESFLTPQNIT---------------DGVDKDG---NP-------CKVS 159
Query: 202 ----QATPKIRDTDHLFLELPLIKDKLEEYINKMS---VSGSWSQNAIQGTYAWLKDGLK 254
+ + +++F L +++L E+ + V + I+ L D
Sbjct: 160 LESGHVVTWVSEENYMF-RLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSV 218
Query: 255 PRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITS----------CYTPDWEEWWK 304
R W +PVP D YVW DA Y++ + D+ E +
Sbjct: 219 SRARATLHNWAIPVPGNP--DHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELER 276
Query: 305 NPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVG 364
P +V +GKD FH + +P+ LL L K I + + K SKS G
Sbjct: 277 FPADV---HVIGKDILKFHAIYWPAFLLSA--GLPLPKKIVAHGWWTKDRKKISKSLG-N 330
Query: 365 VFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFI 424
VF K + +Y+L+ D ++ ++ A+LN EL + LGN V R S
Sbjct: 331 VFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAK 390
Query: 425 AKPPGRGYGSIIPDSPKA--DLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSIS 482
G SP A + S L + + D Y + +++ + +
Sbjct: 391 INVNGEW------PSPAAYTEEDESLIQLIKDLPGTADHYYLIPD---IQKAIIAVFDVL 441
Query: 483 SEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVP 541
NAY+ + WKL D V+ ++ V + LL P +P S+ + L VP
Sbjct: 442 RAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVP 500
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 122/537 (22%), Positives = 207/537 (38%), Gaps = 63/537 (11%)
Query: 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKA 83
++ +TS + YVN PH+G++ +++ DV RY R++G + GTDE+G A
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVYSTLIT-DVIGRYHRVKGERVFALTGTDEHGQKVAEAA 66
Query: 84 MEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEY 143
++ + K + + S D F RT+ Q + + ++ KL + +
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 144 TTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVC-- 201
+ Y + + FL + + D +K G NP CKV
Sbjct: 127 RYEGWYSISDESFLTPQNIT---------------DGVDKDG---NP-------CKVSLE 161
Query: 202 --QATPKIRDTDHLFLELPLIKDKLEEYINKMS---VSGSWSQNAIQGTYAWLKDGLKPR 256
+ + +++F L +++L E+ + V + I+ L D R
Sbjct: 162 SGHVVTWVSEENYMF-RLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSR 220
Query: 257 CITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITS----------CYTPDWEEWWKNP 306
W +PVP D YVW DA Y++ + D+ E + P
Sbjct: 221 ARATLHNWAIPVPGNP--DHCVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFP 278
Query: 307 ENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVF 366
+V +GKD FH + +P+ LL L K I + + K SKS G VF
Sbjct: 279 ADV---HVIGKDILKFHAIYWPAFLLSA--GLPLPKKIVAHGWWTKDRKKISKSLG-NVF 332
Query: 367 GNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAK 426
K + +Y+L+ D ++ ++ A+LN EL + LGN V R S
Sbjct: 333 DPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKIN 392
Query: 427 PPGRGYGSIIPDSPKA--DLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSE 484
G SP A + S L + + D Y + +++ + +
Sbjct: 393 VNGEW------PSPAAYTEEDESLIQLIKDLPGTADHYYLIPD---IQKAIIAVFDVLRA 443
Query: 485 GNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVP 541
NAY+ + WKL D V+ ++ V + LL P +P S+ + L VP
Sbjct: 444 INAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVP 500
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 20/154 (12%)
Query: 23 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETK 82
GK+ +L+ PY + H+G++ + DV AR+ R++GY L+ G D +G E
Sbjct: 33 GKQYVLVM--FPYPSGDLHMGHLKNYTM-GDVLARFRRMQGYEVLHPMGWDAFGLPAENA 89
Query: 83 AMEENCTTQQICDKYYAIHKA---------VYNWFNISFDEFGRTSTPQQTEICQAIFKK 133
A++ + Y I +A +Y+W D T P+ Q IF K
Sbjct: 90 ALKFGVHPKDWT--YANIRQAKESLRLMGILYDW-----DREVTTCEPEYYRWNQWIFLK 142
Query: 134 LLENNWLSEYTTQQLYCDTCKRFLA-DRLVEGSC 166
+ E +C C+ LA +++VEG C
Sbjct: 143 MWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRC 176
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 20/154 (12%)
Query: 23 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETK 82
GK+ +L+ PY + H+G++ + DV AR+ R++GY L+ G D +G E
Sbjct: 33 GKQYVLVM--FPYPSGDLHMGHLKNYTM-GDVLARFRRMQGYEVLHPMGWDAFGLPAENA 89
Query: 83 AMEENCTTQQICDKYYAIHKA---------VYNWFNISFDEFGRTSTPQQTEICQAIFKK 133
A++ + Y I +A +Y+W D T P+ Q IF K
Sbjct: 90 ALKFGVHPKDWT--YANIRQAKESLRLMGILYDW-----DREVTTCEPEYYRWNQWIFLK 142
Query: 134 LLENNWLSEYTTQQLYCDTCKRFLA-DRLVEGSC 166
+ E +C C+ LA +++VEG C
Sbjct: 143 MWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRC 176
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus
Ligand-Free Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus
Ligand-Free Valyl-Trna Synthetase
Length = 862
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 20 PVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTAT 79
P GK +I P V H+G+ + L D RY R+RG+ A+++ GTD G AT
Sbjct: 29 PKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQ-DALIRYKRMRGFEAVWLPGTDHAGIAT 87
Query: 80 ET 81
+
Sbjct: 88 QV 89
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 22 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALY-----ICGTDEYG 76
P ++ IT A PY++ H+G+ + DV AR+ R++GYN L+ I G+ G
Sbjct: 31 PKEKKFYITVAFPYLSGHLHVGHARTYTIP-DVIARFKRMQGYNVLFPMAWHITGSPIVG 89
Query: 77 TATETK 82
A K
Sbjct: 90 IAERIK 95
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 22 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALY-----ICGTDEYG 76
P ++ IT A PY++ H+G+ + DV AR+ R++GYN L+ I G+ G
Sbjct: 31 PKEKKFYITVAFPYLSGHLHVGHARTYTIP-DVIARFKRMQGYNVLFPMAWHITGSPIVG 89
Query: 77 TATETK 82
A K
Sbjct: 90 IAERIK 95
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 41 HLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAI 100
H+G+ G + D+ +RY RL+G++ L+ G D +G E A+ Q K
Sbjct: 53 HVGHPEGYT-ATDIISRYKRLKGFDVLHPIGWDAFGLPAEQYALSSGKHPQPFTLKNIEN 111
Query: 101 HKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKL 134
+ SFD + T+ P Q IFK++
Sbjct: 112 FRRQLKSLGFSFDYEKEVNTTDPSYYRWTQWIFKQI 147
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 9 DGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALY 68
D E + A G ++ PY N H+G+ + +L D RY ++G+ A Y
Sbjct: 32 DAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILK-DFIVRYKTMQGFYAPY 90
Query: 69 ICGTDEYGTATE 80
+ G D +G E
Sbjct: 91 VPGWDTHGLPIE 102
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATE 80
P N +PH+G+ D+F RY +RGY A G D +G E
Sbjct: 47 PTANGLPHVGHAQARSYK-DLFPRYKTMRGYYAPRRAGWDTHGLPVE 92
>pdb|1MEA|A Chain A, Methionyl-Trna Synthetase Zinc Binding Domain. 3d
Structure And Homology With Rubredoxin And Gag
Retroviral Proteins
pdb|1MED|A Chain A, Methionyl-Trna Synthetase Zinc Binding Domain. 3d
Structure And Homology With Rubredoxin And Gag
Retroviral Proteins
Length = 28
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 158 ADRLVEGSCPTLGCNYDSARGDQCEKCG 185
+DR V+G+CP C GD CE CG
Sbjct: 2 SDRFVKGTCPK--CKSPDQYGDNCEVCG 27
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 560 KPWEILPAGHRIGMSSPLFKELKDE 584
+PW+I P G+++G PLF E D
Sbjct: 371 EPWDIAPGGYQVGNFPPLFAEWNDH 395
>pdb|4G1T|A Chain A, Crystal Structure Of Interferon-Stimulated Gene 54
pdb|4G1T|B Chain B, Crystal Structure Of Interferon-Stimulated Gene 54
Length = 472
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 63/173 (36%), Gaps = 21/173 (12%)
Query: 22 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALY----ICGTDEYGT 77
P K L+ AL Y+ N +L IGC A VF + LR N +Y + +
Sbjct: 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVF-QVMNLRE-NGMYGKRKLLELIGHAV 320
Query: 78 ATETKAMEENCTTQQICDKYYAIHKAVYNWFNISF---DEFGRTSTPQQTEICQAIFKKL 134
A KA E N ++C ++H + + EF + TP + K+L
Sbjct: 321 AHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP--------VAKQL 372
Query: 135 LENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKL 187
L Y QLY C+ +EG D+ +K K+
Sbjct: 373 LH----LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKM 421
>pdb|1EJ6|B Chain B, Reovirus Core
pdb|1EJ6|C Chain C, Reovirus Core
pdb|2CSE|V Chain V, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|W Chain W, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1275
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 74/209 (35%), Gaps = 42/209 (20%)
Query: 109 NISFDEFGRTSTPQQTEICQAIFKKLLENNWLS------------------EYTTQQLYC 150
N+ FD TE +FK+LL LS E+ LY
Sbjct: 313 NVDFDRDSSVIMAPPTENNIHLFKQLLNTETLSVRGANPLMFRANVLHMLLEFVLDNLYL 372
Query: 151 DTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRC-KVCQATPK-IR 208
+ F D + T G N S G EK ++ PT + P K+C +R
Sbjct: 373 NRHTGFSQDH----TPFTEGANLRSLPGPDAEKWYSIMYPTRMGTPNVSKICNFVASCVR 428
Query: 209 DTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPV 268
+ F ++ + E+++ S + + +I+G W+ + +++W +
Sbjct: 429 NRVGRFDRAQMMNGAMSEWVDVFETSDALTV-SIRG--RWMARLARMNINPTEIEWAL-- 483
Query: 269 PHEKFKDKVFYVWFDAPIGYISITSCYTP 297
+ GY+++TS Y P
Sbjct: 484 -------------TECAQGYVTVTSPYAP 499
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 333 GTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVS 392
GTE + TL K I L+ SK G+ G+D +TN+ +W Y I RPE
Sbjct: 92 GTEASITLAKXI-----LDRAPKNXSKVY-FGLGGSDANETNVKL-IWYYNNILGRPEKK 144
Query: 393 DTLFTWEDFQA 403
+ W +
Sbjct: 145 KIISRWRGYHG 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,048,964
Number of Sequences: 62578
Number of extensions: 893699
Number of successful extensions: 2348
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2231
Number of HSP's gapped (non-prelim): 49
length of query: 625
length of database: 14,973,337
effective HSP length: 105
effective length of query: 520
effective length of database: 8,402,647
effective search space: 4369376440
effective search space used: 4369376440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)