Query 006917
Match_columns 625
No_of_seqs 307 out of 2348
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 16:20:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0143 MetG Methionyl-tRNA sy 100.0 3E-132 7E-137 1069.1 54.5 546 23-593 3-556 (558)
2 PLN02610 probable methionyl-tR 100.0 3E-130 7E-135 1108.1 59.7 578 18-596 10-587 (801)
3 PRK00133 metG methionyl-tRNA s 100.0 3E-115 6E-120 985.6 55.0 538 25-597 2-546 (673)
4 PRK12268 methionyl-tRNA synthe 100.0 4E-109 8E-114 923.9 54.9 548 24-596 2-555 (556)
5 KOG1247 Methionyl-tRNA synthet 100.0 8E-112 2E-116 837.8 29.7 563 15-598 4-566 (567)
6 TIGR00398 metG methionyl-tRNA 100.0 1E-108 3E-113 914.7 54.5 525 27-582 1-530 (530)
7 PLN02224 methionine-tRNA ligas 100.0 2E-107 3E-112 898.2 53.3 508 24-588 68-587 (616)
8 PRK12267 methionyl-tRNA synthe 100.0 3E-106 7E-111 911.4 53.4 507 24-589 3-519 (648)
9 KOG0436 Methionyl-tRNA synthet 100.0 8E-105 2E-109 789.7 38.0 480 23-545 37-532 (578)
10 PF09334 tRNA-synt_1g: tRNA sy 100.0 2E-100 3E-105 809.1 25.1 385 27-421 1-391 (391)
11 PRK11893 methionyl-tRNA synthe 100.0 8.8E-96 2E-100 810.9 51.9 502 25-583 1-510 (511)
12 TIGR00422 valS valyl-tRNA synt 100.0 1.5E-86 3.2E-91 772.2 44.3 507 11-540 17-700 (861)
13 PRK14900 valS valyl-tRNA synth 100.0 3.1E-84 6.7E-89 756.6 45.5 506 11-540 31-715 (1052)
14 PRK13208 valS valyl-tRNA synth 100.0 1.2E-83 2.7E-88 742.4 45.1 505 11-539 22-705 (800)
15 PRK05729 valS valyl-tRNA synth 100.0 3.9E-82 8.6E-87 734.3 45.0 504 11-540 21-693 (874)
16 PLN02943 aminoacyl-tRNA ligase 100.0 4E-81 8.7E-86 725.7 47.1 510 11-540 72-771 (958)
17 TIGR00392 ileS isoleucyl-tRNA 100.0 1.4E-79 3E-84 714.6 48.2 505 11-541 18-792 (861)
18 COG0525 ValS Valyl-tRNA synthe 100.0 8.9E-80 1.9E-84 678.5 42.7 509 10-540 16-699 (877)
19 PRK06039 ileS isoleucyl-tRNA s 100.0 1.2E-79 2.5E-84 717.9 44.0 509 11-540 23-772 (975)
20 PLN02882 aminoacyl-tRNA ligase 100.0 2.7E-79 5.9E-84 717.0 46.5 513 11-540 20-801 (1159)
21 PRK05743 ileS isoleucyl-tRNA s 100.0 1.7E-79 3.7E-84 711.2 42.8 499 12-539 32-769 (912)
22 COG0060 IleS Isoleucyl-tRNA sy 100.0 3.1E-78 6.6E-83 674.6 40.2 498 21-542 45-782 (933)
23 PTZ00419 valyl-tRNA synthetase 100.0 8.6E-78 1.9E-82 705.4 45.6 509 12-539 41-804 (995)
24 PRK13804 ileS isoleucyl-tRNA s 100.0 4.5E-77 9.8E-82 692.1 44.9 504 12-540 37-808 (961)
25 PLN02843 isoleucyl-tRNA synthe 100.0 1.6E-76 3.5E-81 687.2 46.4 503 11-540 15-797 (974)
26 PLN02381 valyl-tRNA synthetase 100.0 2.2E-76 4.8E-81 689.0 45.4 509 12-539 113-871 (1066)
27 TIGR00395 leuS_arch leucyl-tRN 100.0 7.8E-76 1.7E-80 682.3 42.2 492 11-540 10-778 (938)
28 PTZ00427 isoleucine-tRNA ligas 100.0 5.2E-75 1.1E-79 677.9 45.0 514 11-540 84-906 (1205)
29 cd00814 MetRS_core catalytic c 100.0 8E-76 1.7E-80 609.7 31.6 316 26-396 1-319 (319)
30 cd00817 ValRS_core catalytic c 100.0 9.5E-75 2.1E-79 614.1 29.9 326 25-396 1-382 (382)
31 PRK00390 leuS leucyl-tRNA synt 100.0 9.4E-71 2E-75 630.8 42.1 456 12-540 18-723 (805)
32 TIGR00396 leuS_bact leucyl-tRN 100.0 1.1E-70 2.5E-75 631.0 41.5 460 12-540 14-759 (842)
33 PLN02563 aminoacyl-tRNA ligase 100.0 2.6E-69 5.7E-74 619.9 39.5 449 23-540 108-875 (963)
34 PRK12300 leuS leucyl-tRNA synt 100.0 1.4E-68 3E-73 619.2 38.0 461 40-541 1-733 (897)
35 cd00818 IleRS_core catalytic c 100.0 2.3E-67 5E-72 548.7 27.1 303 25-396 1-338 (338)
36 PLN02959 aminoacyl-tRNA ligase 100.0 4.2E-65 9.1E-70 596.3 42.5 479 24-538 44-877 (1084)
37 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.1E-64 2.4E-69 525.6 28.1 294 26-396 1-312 (312)
38 COG0495 LeuS Leucyl-tRNA synth 100.0 1.1E-63 2.3E-68 553.9 35.5 460 11-540 17-733 (814)
39 KOG0432 Valyl-tRNA synthetase 100.0 4.4E-63 9.6E-68 531.5 35.9 508 12-539 59-807 (995)
40 cd00812 LeuRS_core catalytic c 100.0 8.1E-64 1.7E-68 517.7 25.4 293 26-398 1-314 (314)
41 KOG0433 Isoleucyl-tRNA synthet 100.0 6.6E-62 1.4E-66 512.1 37.5 484 25-542 59-799 (937)
42 PTZ00399 cysteinyl-tRNA-synthe 100.0 7.3E-60 1.6E-64 524.0 37.2 500 7-621 42-592 (651)
43 PF00133 tRNA-synt_1: tRNA syn 100.0 2.6E-61 5.7E-66 539.3 24.6 363 22-397 20-601 (601)
44 KOG0435 Leucyl-tRNA synthetase 100.0 8.2E-58 1.8E-62 477.2 26.3 455 23-540 56-781 (876)
45 KOG0434 Isoleucyl-tRNA synthet 100.0 1.8E-56 3.8E-61 466.4 28.8 501 22-540 35-785 (1070)
46 PRK14536 cysS cysteinyl-tRNA s 100.0 2.3E-53 5E-58 453.9 32.3 386 7-487 5-404 (490)
47 PLN02946 cysteine-tRNA ligase 100.0 9.2E-53 2E-57 453.3 27.8 380 7-491 62-444 (557)
48 PRK00260 cysS cysteinyl-tRNA s 100.0 1.8E-51 3.9E-56 445.4 34.4 368 7-491 5-376 (463)
49 TIGR00435 cysS cysteinyl-tRNA 100.0 3.4E-51 7.4E-56 441.8 34.1 367 8-486 4-375 (465)
50 PRK14534 cysS cysteinyl-tRNA s 100.0 4.6E-51 1E-55 433.8 31.6 380 7-487 5-397 (481)
51 COG0215 CysS Cysteinyl-tRNA sy 100.0 2.2E-50 4.7E-55 418.5 31.6 369 8-491 5-377 (464)
52 PRK14535 cysS cysteinyl-tRNA s 100.0 2.1E-50 4.6E-55 435.8 30.3 365 8-488 231-613 (699)
53 TIGR03447 mycothiol_MshC cyste 100.0 7.8E-51 1.7E-55 424.1 25.4 359 8-487 21-387 (411)
54 PRK12418 cysteinyl-tRNA synthe 100.0 2.1E-49 4.6E-54 412.0 27.6 348 25-492 10-365 (384)
55 KOG2007 Cysteinyl-tRNA synthet 100.0 1.8E-48 3.9E-53 396.7 32.5 499 8-623 38-565 (586)
56 PF01406 tRNA-synt_1e: tRNA sy 100.0 1.5E-43 3.3E-48 350.9 14.2 296 18-405 1-299 (300)
57 cd00672 CysRS_core catalytic c 100.0 1.4E-40 3E-45 322.4 19.6 209 8-397 3-213 (213)
58 PRK01611 argS arginyl-tRNA syn 100.0 1.3E-39 2.9E-44 357.8 29.8 339 23-493 109-469 (507)
59 KOG0437 Leucyl-tRNA synthetase 100.0 3.7E-39 8.1E-44 339.6 29.7 476 23-541 42-871 (1080)
60 TIGR00456 argS arginyl-tRNA sy 100.0 5.5E-36 1.2E-40 332.7 32.7 345 24-502 111-534 (566)
61 cd00674 LysRS_core_class_I cat 100.0 1.1E-34 2.4E-39 299.2 19.8 271 24-400 18-318 (353)
62 PRK12451 arginyl-tRNA syntheta 100.0 1E-31 2.2E-36 297.4 34.4 340 23-494 111-526 (562)
63 COG0018 ArgS Arginyl-tRNA synt 100.0 2.5E-31 5.4E-36 289.9 32.6 343 23-494 115-539 (577)
64 PLN02286 arginine-tRNA ligase 100.0 2.9E-29 6.4E-34 277.8 33.7 341 23-493 115-540 (576)
65 PRK00750 lysK lysyl-tRNA synth 100.0 1.8E-31 3.9E-36 291.0 13.2 268 26-398 24-321 (510)
66 cd00671 ArgRS_core catalytic c 99.9 5.4E-27 1.2E-31 229.3 19.3 124 26-153 1-124 (212)
67 TIGR00467 lysS_arch lysyl-tRNA 99.9 2.1E-27 4.5E-32 256.8 12.9 267 25-401 18-317 (515)
68 PF00750 tRNA-synt_1d: tRNA sy 99.9 1.9E-21 4.1E-26 204.3 14.3 129 22-151 17-201 (354)
69 PF01921 tRNA-synt_1f: tRNA sy 99.8 1.1E-21 2.3E-26 200.1 -0.0 262 24-402 22-327 (360)
70 cd00802 class_I_aaRS_core cata 99.8 8.7E-19 1.9E-23 160.8 14.5 77 29-106 1-77 (143)
71 COG1384 LysS Lysyl-tRNA synthe 99.8 1.3E-18 2.8E-23 181.9 16.9 90 25-116 19-127 (521)
72 cd07957 Anticodon_Ia_Met Antic 99.8 5.7E-18 1.2E-22 152.5 13.5 128 405-538 1-129 (129)
73 PRK04156 gltX glutamyl-tRNA sy 99.7 1.8E-15 3.9E-20 164.5 20.6 292 26-412 100-408 (567)
74 KOG4426 Arginyl-tRNA synthetas 99.6 8E-13 1.7E-17 133.8 28.9 343 18-493 181-613 (656)
75 cd07959 Anticodon_Ia_Leu_AEc A 99.6 1.2E-14 2.7E-19 128.4 13.2 115 406-538 2-117 (117)
76 cd09287 GluRS_non_core catalyt 99.6 7.3E-14 1.6E-18 136.4 15.2 96 28-142 2-97 (240)
77 cd07962 Anticodon_Ia_Val Antic 99.5 1.9E-13 4E-18 124.1 16.4 133 396-538 1-135 (135)
78 cd07960 Anticodon_Ia_Ile_BEm A 99.5 3.5E-13 7.6E-18 128.7 17.1 137 396-540 1-141 (180)
79 KOG1195 Arginyl-tRNA synthetas 99.5 2.2E-12 4.8E-17 133.7 23.2 340 24-492 109-528 (567)
80 cd07958 Anticodon_Ia_Leu_BEm A 99.5 2.9E-13 6.3E-18 119.5 11.9 111 411-538 7-117 (117)
81 TIGR00464 gltX_bact glutamyl-t 99.5 6.3E-12 1.4E-16 136.4 23.3 93 29-142 3-96 (470)
82 PRK12558 glutamyl-tRNA synthet 99.5 2.2E-12 4.8E-17 137.3 19.3 94 28-142 3-96 (445)
83 PLN03233 putative glutamate-tR 99.5 7.3E-12 1.6E-16 134.9 21.9 286 27-412 11-316 (523)
84 PRK12410 glutamylglutaminyl-tR 99.5 5.3E-13 1.1E-17 141.4 13.0 266 32-404 4-282 (433)
85 cd00418 GlxRS_core catalytic c 99.4 5.8E-12 1.2E-16 122.7 16.3 89 29-138 3-92 (230)
86 PRK01406 gltX glutamyl-tRNA sy 99.4 2.9E-12 6.3E-17 139.1 14.9 94 28-142 5-106 (476)
87 cd07961 Anticodon_Ia_Ile_ABEc 99.4 9.3E-12 2E-16 119.2 16.7 139 396-540 1-142 (183)
88 cd00807 GlnRS_core catalytic c 99.4 1.4E-11 3E-16 120.0 17.7 94 28-142 2-95 (238)
89 COG0008 GlnS Glutamyl- and glu 99.4 6.3E-12 1.4E-16 134.6 16.4 94 28-142 10-104 (472)
90 PRK14895 gltX glutamyl-tRNA sy 99.4 1.3E-11 2.8E-16 132.9 16.8 94 28-142 5-99 (513)
91 TIGR00463 gltX_arch glutamyl-t 99.4 4.8E-11 1E-15 130.1 20.7 96 26-142 92-187 (560)
92 PRK05347 glutaminyl-tRNA synth 99.3 4.5E-11 9.7E-16 129.2 19.8 290 27-411 29-339 (554)
93 PF08264 Anticodon_1: Anticodo 99.3 6.5E-12 1.4E-16 116.5 11.6 90 448-538 1-92 (153)
94 TIGR00440 glnS glutaminyl-tRNA 99.3 5E-11 1.1E-15 128.7 17.3 93 29-142 2-95 (522)
95 PLN02627 glutamyl-tRNA synthet 99.3 3.9E-11 8.5E-16 129.4 16.3 94 28-142 46-148 (535)
96 PTZ00402 glutamyl-tRNA synthet 99.3 3E-10 6.5E-15 123.8 22.5 94 27-141 52-146 (601)
97 PLN02907 glutamate-tRNA ligase 99.3 2E-10 4.4E-15 130.0 20.9 285 26-412 212-518 (722)
98 PTZ00437 glutaminyl-tRNA synth 99.3 6.8E-11 1.5E-15 127.6 16.1 94 28-142 52-145 (574)
99 PRK14703 glutaminyl-tRNA synth 99.3 1.7E-10 3.7E-15 130.2 18.5 292 27-412 31-343 (771)
100 cd00808 GluRS_core catalytic c 99.2 1.6E-10 3.5E-15 113.5 15.8 72 312-388 120-193 (239)
101 PLN02859 glutamine-tRNA ligase 99.2 5.1E-10 1.1E-14 125.0 18.7 94 28-142 265-358 (788)
102 cd07375 Anticodon_Ia_like Anti 99.2 2.5E-10 5.3E-15 100.4 12.4 110 411-527 8-117 (117)
103 PF00749 tRNA-synt_1c: tRNA sy 99.2 8.1E-11 1.8E-15 121.5 10.7 94 28-142 2-96 (314)
104 TIGR03838 queuosine_YadB gluta 99.1 2.3E-10 4.9E-15 114.7 10.8 93 29-142 2-95 (272)
105 PRK05710 glutamyl-Q tRNA(Asp) 99.1 9.1E-10 2E-14 111.6 11.0 94 28-142 6-100 (299)
106 KOG1149 Glutamyl-tRNA syntheta 99.0 2.1E-07 4.5E-12 95.5 23.8 284 28-410 34-336 (524)
107 cd07956 Anticodon_Ia_Arg Antic 98.6 9.6E-07 2.1E-11 82.1 15.0 115 374-493 2-118 (156)
108 PRK12556 tryptophanyl-tRNA syn 97.8 0.00016 3.5E-09 75.2 12.1 82 30-124 7-91 (332)
109 KOG1147 Glutamyl-tRNA syntheta 97.8 8.2E-05 1.8E-09 78.6 9.6 98 28-146 201-298 (712)
110 TIGR00233 trpS tryptophanyl-tR 97.8 0.00033 7.1E-09 73.0 14.0 75 26-113 2-76 (328)
111 cd00395 Tyr_Trp_RS_core cataly 97.7 0.00052 1.1E-08 69.7 13.3 69 312-386 156-225 (273)
112 PRK13354 tyrosyl-tRNA syntheta 97.6 0.00023 4.9E-09 76.3 10.0 68 312-386 189-257 (410)
113 PF05746 DALR_1: DALR anticodo 97.5 0.00064 1.4E-08 59.9 9.4 82 413-495 1-82 (119)
114 PRK05912 tyrosyl-tRNA syntheta 97.5 0.00061 1.3E-08 73.2 10.6 68 312-386 191-259 (408)
115 PRK12284 tryptophanyl-tRNA syn 97.4 0.0013 2.7E-08 70.0 12.2 86 28-126 4-92 (431)
116 cd00805 TyrRS_core catalytic c 97.4 0.00056 1.2E-08 69.4 8.7 67 312-386 154-221 (269)
117 cd00806 TrpRS_core catalytic c 97.4 0.0017 3.7E-08 66.3 11.5 71 30-113 3-73 (280)
118 PRK08560 tyrosyl-tRNA syntheta 97.2 0.0023 5.1E-08 66.8 11.3 76 24-113 28-103 (329)
119 PTZ00126 tyrosyl-tRNA syntheta 97.1 0.0028 6.1E-08 67.2 10.7 78 25-113 65-142 (383)
120 PRK00927 tryptophanyl-tRNA syn 96.8 0.0056 1.2E-07 64.1 9.2 69 30-113 5-73 (333)
121 COG0162 TyrS Tyrosyl-tRNA synt 96.7 0.0074 1.6E-07 64.0 9.4 66 35-106 40-108 (401)
122 smart00836 DALR_1 DALR anticod 96.5 0.038 8.3E-07 48.8 11.5 78 414-494 2-84 (122)
123 KOG1148 Glutaminyl-tRNA synthe 96.4 0.011 2.4E-07 63.7 8.4 94 28-142 249-342 (764)
124 PRK12285 tryptophanyl-tRNA syn 94.2 0.29 6.3E-06 51.9 9.9 76 24-113 64-139 (368)
125 PLN02486 aminoacyl-tRNA ligase 93.9 0.48 1E-05 50.4 10.9 78 23-113 70-148 (383)
126 PF09190 DALR_2: DALR domain; 92.4 0.24 5.1E-06 38.2 4.5 27 461-487 1-28 (63)
127 PF00579 tRNA-synt_1b: tRNA sy 92.3 0.14 3.1E-06 52.7 4.2 41 25-71 4-44 (292)
128 COG0180 TrpS Tryptophanyl-tRNA 92.0 0.57 1.2E-05 48.1 8.0 92 25-129 4-99 (314)
129 PRK12282 tryptophanyl-tRNA syn 90.8 1.4 3E-05 46.2 9.6 71 29-113 5-75 (333)
130 COG1656 Uncharacterized conser 90.5 0.45 9.7E-06 43.6 4.9 121 55-189 18-141 (165)
131 smart00840 DALR_2 This DALR do 90.0 0.61 1.3E-05 34.7 4.6 30 462-491 2-32 (56)
132 PRK14714 DNA polymerase II lar 88.5 0.98 2.1E-05 53.9 6.9 95 125-227 642-739 (1337)
133 COG0180 TrpS Tryptophanyl-tRNA 87.7 0.29 6.4E-06 50.2 1.9 56 312-369 148-212 (314)
134 PLN02886 aminoacyl-tRNA ligase 86.6 2.4 5.1E-05 45.2 7.9 83 29-126 49-134 (389)
135 PRK12285 tryptophanyl-tRNA syn 85.4 0.5 1.1E-05 50.1 2.2 65 312-386 206-276 (368)
136 PF01927 Mut7-C: Mut7-C RNAse 85.3 0.58 1.3E-05 42.8 2.3 31 55-87 12-42 (147)
137 TIGR00234 tyrS tyrosyl-tRNA sy 84.7 0.98 2.1E-05 48.2 4.0 40 26-71 30-70 (377)
138 PRK12283 tryptophanyl-tRNA syn 82.9 0.5 1.1E-05 50.1 0.9 82 29-125 5-90 (398)
139 PF00579 tRNA-synt_1b: tRNA sy 82.3 2.4 5.2E-05 43.6 5.6 57 312-370 152-213 (292)
140 PRK01233 glyS glycyl-tRNA synt 82.0 21 0.00045 41.2 13.3 82 408-492 566-647 (682)
141 PRK12283 tryptophanyl-tRNA syn 80.5 7.2 0.00016 41.6 8.4 41 340-386 246-288 (398)
142 PRK12282 tryptophanyl-tRNA syn 80.0 6.2 0.00014 41.3 7.8 57 312-369 145-209 (333)
143 COG0751 GlyS Glycyl-tRNA synth 79.6 23 0.00049 40.3 12.3 80 410-492 577-656 (691)
144 PLN02486 aminoacyl-tRNA ligase 79.3 1.3 2.8E-05 47.2 2.5 65 312-386 222-290 (383)
145 TIGR00211 glyS glycyl-tRNA syn 78.5 29 0.00063 40.0 13.0 82 408-492 576-657 (691)
146 PRK04023 DNA polymerase II lar 77.9 4.1 8.9E-05 47.7 6.0 77 137-227 617-693 (1121)
147 TIGR00234 tyrS tyrosyl-tRNA sy 74.4 6.3 0.00014 42.1 6.0 54 312-369 180-234 (377)
148 cd07963 Anticodon_Ia_Cys Antic 72.6 9.5 0.00021 35.1 6.1 34 457-490 33-67 (156)
149 PRK14908 glycyl-tRNA synthetas 71.9 44 0.00096 40.0 12.5 110 374-492 857-967 (1000)
150 PTZ00348 tyrosyl-tRNA syntheta 67.4 4.9 0.00011 46.0 3.5 76 26-113 32-108 (682)
151 COG2185 Sbm Methylmalonyl-CoA 63.4 17 0.00036 32.9 5.4 70 42-139 23-92 (143)
152 PTZ00348 tyrosyl-tRNA syntheta 62.4 36 0.00077 39.2 9.1 54 312-369 178-236 (682)
153 PF13240 zinc_ribbon_2: zinc-r 56.8 7.8 0.00017 23.3 1.5 8 179-186 14-21 (23)
154 smart00659 RPOLCX RNA polymera 53.1 12 0.00025 26.6 2.1 32 180-211 4-35 (44)
155 cd07955 Anticodon_Ia_Cys_like 51.2 29 0.00062 28.1 4.4 29 457-485 28-57 (81)
156 PF12773 DZR: Double zinc ribb 50.3 16 0.00035 26.3 2.6 35 171-205 4-39 (50)
157 PF13248 zf-ribbon_3: zinc-rib 49.7 11 0.00025 23.2 1.4 6 180-185 18-23 (26)
158 COG1996 RPC10 DNA-directed RNA 49.4 11 0.00025 27.2 1.6 32 179-210 7-39 (49)
159 PRK00398 rpoP DNA-directed RNA 48.8 10 0.00022 27.0 1.3 28 181-208 6-34 (46)
160 PF03833 PolC_DP2: DNA polymer 47.0 6.4 0.00014 45.3 0.0 63 147-222 655-717 (900)
161 PLN02886 aminoacyl-tRNA ligase 46.3 20 0.00043 38.3 3.5 17 353-369 247-267 (389)
162 KOG2145 Cytoplasmic tryptophan 45.7 26 0.00057 35.2 4.0 46 23-74 82-128 (397)
163 PF09862 DUF2089: Protein of u 44.3 40 0.00087 29.2 4.4 35 196-230 13-48 (113)
164 COG5270 PUA domain (predicted 43.5 15 0.00033 34.3 1.8 23 136-158 3-25 (202)
165 KOG2623 Tyrosyl-tRNA synthetas 42.8 24 0.00053 37.1 3.4 49 26-79 63-113 (467)
166 KOG2713 Mitochondrial tryptoph 42.6 77 0.0017 32.1 6.6 87 29-128 16-107 (347)
167 PRK14559 putative protein seri 41.9 23 0.00049 40.6 3.3 34 149-188 17-51 (645)
168 PRK06266 transcription initiat 41.5 12 0.00027 35.3 1.0 19 123-141 49-67 (178)
169 PRK14559 putative protein seri 41.2 21 0.00046 40.8 3.0 50 149-206 3-52 (645)
170 PF03604 DNA_RNApol_7kD: DNA d 38.4 26 0.00057 22.9 1.9 28 181-208 3-30 (32)
171 PF08271 TF_Zn_Ribbon: TFIIB z 38.4 23 0.00049 24.8 1.7 15 176-190 16-31 (43)
172 KOG2144 Tyrosyl-tRNA synthetas 37.7 13 0.00029 37.3 0.6 70 35-113 42-112 (360)
173 PRK14714 DNA polymerase II lar 35.4 25 0.00054 42.6 2.4 36 165-207 669-704 (1337)
174 PRK05580 primosome assembly pr 33.7 2.7E+02 0.0058 32.4 10.5 135 124-284 353-507 (679)
175 COG5349 Uncharacterized protei 33.4 24 0.00052 30.6 1.4 26 162-189 20-51 (126)
176 PF05191 ADK_lid: Adenylate ki 31.8 19 0.0004 24.3 0.4 15 194-208 20-34 (36)
177 cd01675 RNR_III Class III ribo 30.9 54 0.0012 37.0 4.1 18 124-141 494-511 (555)
178 PRK05978 hypothetical protein; 30.8 34 0.00074 31.2 2.0 10 163-174 33-42 (148)
179 COG1198 PriA Primosomal protei 30.5 47 0.001 38.6 3.5 50 142-204 430-484 (730)
180 PF14671 DSPn: Dual specificit 29.5 38 0.00082 30.7 2.1 36 36-74 40-78 (141)
181 KOG2623 Tyrosyl-tRNA synthetas 28.7 50 0.0011 34.8 3.0 20 350-369 266-286 (467)
182 PRK00564 hypA hydrogenase nick 28.6 51 0.0011 28.8 2.7 8 147-154 71-78 (117)
183 COG3357 Predicted transcriptio 28.5 40 0.00087 27.7 1.8 33 180-214 60-93 (97)
184 KOG2963 RNA-binding protein re 27.9 67 0.0014 33.3 3.7 37 573-609 305-344 (405)
185 TIGR00640 acid_CoA_mut_C methy 27.7 2.3E+02 0.005 25.2 6.8 66 50-139 17-82 (132)
186 cd00350 rubredoxin_like Rubred 27.1 41 0.0009 22.0 1.4 24 180-204 3-26 (33)
187 TIGR00125 cyt_tran_rel cytidyl 26.4 56 0.0012 24.7 2.3 30 37-74 8-37 (66)
188 PF04405 ScdA_N: Domain of Unk 25.5 63 0.0014 24.2 2.3 45 52-98 6-53 (56)
189 PRK13671 hypothetical protein; 24.9 1.8E+02 0.0038 30.0 6.2 79 34-119 6-103 (298)
190 PRK12496 hypothetical protein; 24.4 47 0.001 30.9 1.8 25 180-205 129-153 (164)
191 PF07394 DUF1501: Protein of u 24.0 1.8E+02 0.0039 31.1 6.5 57 52-113 234-292 (392)
192 PRK14529 adenylate kinase; Pro 23.8 2.2E+02 0.0048 27.9 6.5 63 71-138 41-103 (223)
193 COG2401 ABC-type ATPase fused 23.6 49 0.0011 35.5 1.9 15 53-68 32-46 (593)
194 PRK00423 tfb transcription ini 23.6 60 0.0013 33.7 2.6 27 162-190 10-42 (310)
195 TIGR00595 priA primosomal prot 23.5 1.2E+02 0.0026 33.9 5.1 51 142-205 208-263 (505)
196 PRK09620 hypothetical protein; 23.1 1.3E+02 0.0029 29.6 4.9 49 24-73 3-53 (229)
197 PF06750 DiS_P_DiS: Bacterial 22.2 62 0.0014 26.9 2.0 27 179-205 34-68 (92)
198 PF10571 UPF0547: Uncharacteri 21.6 69 0.0015 19.9 1.6 7 180-186 16-22 (26)
199 PLN02413 choline-phosphate cyt 21.4 1.5E+02 0.0032 30.2 4.7 29 36-72 35-63 (294)
200 PRK00420 hypothetical protein; 21.2 58 0.0012 28.2 1.6 10 197-206 42-51 (112)
201 PF07754 DUF1610: Domain of un 21.1 60 0.0013 19.8 1.2 7 184-190 4-10 (24)
202 TIGR03042 PS_II_psbQ_bact phot 21.0 3.2E+02 0.007 24.8 6.3 43 449-491 98-140 (142)
203 COG1439 Predicted nucleic acid 20.8 71 0.0015 30.0 2.2 27 179-208 140-166 (177)
204 COG3110 Uncharacterized protei 20.6 47 0.001 31.6 1.0 17 348-364 30-46 (216)
205 PF03033 Glyco_transf_28: Glyc 20.6 91 0.002 27.4 2.9 27 42-72 9-35 (139)
206 PF03698 UPF0180: Uncharacteri 20.2 1.2E+02 0.0026 24.6 3.1 47 54-100 12-78 (80)
207 COG1933 Archaeal DNA polymeras 20.1 75 0.0016 31.2 2.2 80 125-207 116-195 (253)
No 1
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-132 Score=1069.09 Aligned_cols=546 Identities=40% Similarity=0.704 Sum_probs=511.0
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006917 23 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHK 102 (625)
Q Consensus 23 ~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 102 (625)
..++++||+|+|||||+|||||+++ +|.+||++||+|++|++|+|++|+|+||+||+.+|+++|++|+++|+++++.|+
T Consensus 3 ~~~~~~VTtalpY~Ng~~HlGH~~~-~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~ 81 (558)
T COG0143 3 MMKKILVTTALPYPNGPPHLGHLYT-YLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFK 81 (558)
T ss_pred CCCcEEEecCCCCCCCCcchhhHHH-HHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999995 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCcccc
Q 006917 103 AVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCE 182 (625)
Q Consensus 103 ~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce 182 (625)
++++.|||++|.|+||+++.|.+.+|++|.+|.++|+||.+.+++|||++|++|++|++|+|+||. ||+++++||+||
T Consensus 82 ~~~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~--cg~~~arGD~Ce 159 (558)
T COG0143 82 ELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPK--CGGEDARGDQCE 159 (558)
T ss_pred HHHHHhCCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCC--cCccccCcchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCccccc-c
Q 006917 183 KCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITR-D 261 (625)
Q Consensus 183 ~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR-~ 261 (625)
.||+.++|.+|++|+|++||+++++++++||||+|++|+++|++|+++++. ..||.+.++.+.+|+++||.|||||| +
T Consensus 160 ~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~-~~~p~~~~ne~~~~i~~GL~d~~IsR~~ 238 (558)
T COG0143 160 NCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPD-FIWPANRRNEVLNFLKEGLKDLSITRTD 238 (558)
T ss_pred hccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCcc-ccCChHHHHHHHHHHHccCcccceecCC
Confidence 999999999999999999999999999999999999999999999999873 46999999999999999999999999 8
Q ss_pred cCCCcccCCCCCCCceeeeeccccchHHHhccCCC-----hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCC
Q 006917 262 LKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYT-----PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEE 336 (625)
Q Consensus 262 ~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~-----~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~ 336 (625)
.+||||||+. +++|+||||||++||||+++.+. .+|++||+++ +++++|||||||++||+++|||||+++|.
T Consensus 239 ~~WGipvP~~--p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~-~~e~vhfIGKDii~FHav~wPamL~~~~~ 315 (558)
T COG0143 239 LDWGIPVPGD--PGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPAD-DTELVHFIGKDIIRFHAVYWPAMLMAAGL 315 (558)
T ss_pred CCCCccCCCC--CCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCC-CceEEEEeccccCcchhhHHHHHHHhCCC
Confidence 9999999955 89999999999999999987653 4799999875 89999999999999999999999999998
Q ss_pred CccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHH
Q 006917 337 NWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNF 416 (625)
Q Consensus 337 ~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~ 416 (625)
+ +|+++++||||+++|+|||||+||+|+|.++++ .||+|+|||||++..|+++|.+||++.|++++|++|++.+||+
T Consensus 316 ~--lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~-~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl 392 (558)
T COG0143 316 P--LPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLE-QYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNL 392 (558)
T ss_pred C--CCCEEEeeeeEEECCccccccCCcEEeHHHHHH-HcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6 899999999999999999999999999999998 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhccccc
Q 006917 417 VNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWK 496 (625)
Q Consensus 417 ~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~pw~ 496 (625)
++|+++|+.| +++|.+|....... +.|+.++..+..+.+.+.++|+.+++++|+..|++|++.+|+|++..+||+
T Consensus 393 ~~R~~~fi~k----~~~g~vp~~~~~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~ 467 (558)
T COG0143 393 ANRTLGFINK----YFDGVVPAAGAPDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWK 467 (558)
T ss_pred HHHHHHHHHh----ccCCcCCccccccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCch
Confidence 9999999999 89999987542223 678899999999999999999999999999999999999999999999999
Q ss_pred cccCC-HhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCccc-ccCCcccchhhhccCCCccCCCCCccCCC
Q 006917 497 LYNED-QGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETK-FSLSDENGDLERARKPWEILPAGHRIGMS 574 (625)
Q Consensus 497 l~k~~-~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 574 (625)
+.|++ ++++++++++++++++.++++|+||||.+|++||++||.+...+ ..+. ..+..+..|+.++++
T Consensus 468 l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~~~~~~----------~~~~~l~~~~~~~~~ 537 (558)
T COG0143 468 LAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWL----------GARQPLLPGHKLGPP 537 (558)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCccccccchhh----------hhccccCCCcccCCc
Confidence 99875 68999999999999999999999999999999999999875432 1111 112246678999999
Q ss_pred CCCccCCChHHHHHHHHHh
Q 006917 575 SPLFKELKDEDVRFFREKF 593 (625)
Q Consensus 575 ~~Lf~ki~~~~i~~~~~~~ 593 (625)
++||+|++.+.++++.++.
T Consensus 538 ~~lF~ri~~~~~~~~~~~~ 556 (558)
T COG0143 538 EPLFPRIEEEAIEELIEAL 556 (558)
T ss_pred ccCccccCHHHHHHHHHhh
Confidence 9999999999888776554
No 2
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=3.4e-130 Score=1108.15 Aligned_cols=578 Identities=84% Similarity=1.430 Sum_probs=526.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHH
Q 006917 18 KLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKY 97 (625)
Q Consensus 18 ~~p~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 97 (625)
..|..+.++++||+|+|||||+|||||+++++|.+||++||+|++|++|+|++|+|+||+||+.+|++.|++|+++|+++
T Consensus 10 ~~~~~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~ 89 (801)
T PLN02610 10 KLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKY 89 (801)
T ss_pred cCCCCCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHH
Confidence 35777888999999999999999999999878889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCC
Q 006917 98 YAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSAR 177 (625)
Q Consensus 98 ~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~ 177 (625)
++.|+++|++|||++|.|+||++++|.+.|+++|.+|+++|+||++.+++|||+.|++||+|++|+|+||..+|++++++
T Consensus 90 ~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~ 169 (801)
T PLN02610 90 HAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSAR 169 (801)
T ss_pred HHHHHHHHHHcCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 006917 178 GDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRC 257 (625)
Q Consensus 178 g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ 257 (625)
|++||.||+.++|.+|++|+|++||+++++++++||||+|++|+++|.+|+++++..|.|+++++..+.+||++||+|||
T Consensus 170 Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~ 249 (801)
T PLN02610 170 GDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRC 249 (801)
T ss_pred cchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999998777788999999888999999999999
Q ss_pred cccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCC
Q 006917 258 ITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEEN 337 (625)
Q Consensus 258 IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~ 337 (625)
|||+..||||||.++.+++||||||||++||||++.+|..+|++||++|.+++++||+||||++||+++|||||+++|.+
T Consensus 250 IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~ 329 (801)
T PLN02610 250 ITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN 329 (801)
T ss_pred eeeecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCC
Confidence 99999999999998888999999999999999998788778999998766888999999999999999999999999998
Q ss_pred ccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHH
Q 006917 338 WTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFV 417 (625)
Q Consensus 338 ~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~ 417 (625)
|++|+++++||||+++|+|||||+||+|+|.++++..||+|++||||++.+++++|.+||++.|.+++|++|++++||++
T Consensus 330 ~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv 409 (801)
T PLN02610 330 WTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFI 409 (801)
T ss_pred cCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999997349999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhcccccc
Q 006917 418 NRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKL 497 (625)
Q Consensus 418 ~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~pw~l 497 (625)
+|+++++.+....++++.+|..........|++|++.+.++++.+.++|++|+++.|++.|+++++.+|+|++..+||++
T Consensus 410 ~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~kPW~L 489 (801)
T PLN02610 410 NRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 489 (801)
T ss_pred HHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 99999998200006888887532222345688999999999999999999999999999999999999999999999999
Q ss_pred ccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCcccccCCcccchhhhccCCCccCCCCCccCCCCCC
Q 006917 498 YNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPL 577 (625)
Q Consensus 498 ~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~L 577 (625)
.+++.+++.+++++++++++.+++||+||||++|++||++||++... ..+.+..+.+......|+.+..|++++++++|
T Consensus 490 ~k~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~l 568 (801)
T PLN02610 490 YKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPES-LSLSDEKGEVARAKRPWELVPAGHKIGTPEPL 568 (801)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCCccc-ccchhccccccccccccccCCCCCCCCCCCCC
Confidence 87776778889999999999999999999999999999999986432 12221000000001124456789999999999
Q ss_pred ccCCChHHHHHHHHHhcCc
Q 006917 578 FKELKDEDVRFFREKFAGS 596 (625)
Q Consensus 578 f~ki~~~~i~~~~~~~~~~ 596 (625)
|+|++++++++..+++.++
T Consensus 569 F~ri~~~~~~~~~~~~~~~ 587 (801)
T PLN02610 569 FKELKDEEVEAYREKFAGS 587 (801)
T ss_pred CCCCCHHHHHHHHHHhccc
Confidence 9999998887776665543
No 3
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-115 Score=985.65 Aligned_cols=538 Identities=35% Similarity=0.645 Sum_probs=494.5
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006917 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAV 104 (625)
Q Consensus 25 ~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 104 (625)
++++||+|||||||.|||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|++.|++|+++|+++++.|+++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~-~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVE-YIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHH-HHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999996 67799999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCcccccc
Q 006917 105 YNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKC 184 (625)
Q Consensus 105 ~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~c 184 (625)
++.|||++|.|+||++++|.+.++++|.+|+++|+||++.+++|||+.|++||++++|.|+||. |++.+++|++||.|
T Consensus 81 ~~~l~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~--C~~~d~~g~~ce~c 158 (673)
T PRK00133 81 FAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPK--CGAEDQYGDNCEVC 158 (673)
T ss_pred HHHhCCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCC--CCCcccCCchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCC
Q 006917 185 GKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKW 264 (625)
Q Consensus 185 g~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~W 264 (625)
|..+++.+|++|+|.+||++++++.++||||+|++|+++|++++++.. .||+++++.+.+||+++|+||||||++.|
T Consensus 159 g~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~l~d~~ISR~~~W 235 (673)
T PRK00133 159 GATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSG---ELQPNVANKMKEWLEEGLQDWDISRDAPY 235 (673)
T ss_pred cccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHhCCCcccceeeeCCc
Confidence 999999999999999999999999999999999999999999997643 47999999999999999999999999999
Q ss_pred -CcccCCCCCCCceeeeeccccchHHHhccCCC-----hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCc
Q 006917 265 -GVPVPHEKFKDKVFYVWFDAPIGYISITSCYT-----PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENW 338 (625)
Q Consensus 265 -Gi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~-----~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~ 338 (625)
|||+|++ +++++||||||++||++++.+|. +.|+.||+.+.+++++||+||||++||+++|||+|+++|+
T Consensus 236 ~GipvP~~--~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~-- 311 (673)
T PRK00133 236 FGFEIPGA--PGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGY-- 311 (673)
T ss_pred cceECCCC--CCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCC--
Confidence 9999965 79999999999999999876553 3589999433457789999999999999999999999886
Q ss_pred cCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCC-CCCCcCHHHHHHHHhHHHHHHHHHHH
Q 006917 339 TLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEV-SDTLFTWEDFQAKLNTELLNNLGNFV 417 (625)
Q Consensus 339 ~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~-~d~~fs~~~~~~~~n~~l~~~l~n~~ 417 (625)
++|+++++||||+.+|+|||||+||+|+|.|+++ .||+|++||||++.++.+ +|++||++.+..+.|++++++++|++
T Consensus 312 ~lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie-~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~ 390 (673)
T PRK00133 312 RLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLD-HLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFA 390 (673)
T ss_pred CCCCEEeeeccEEecCCcccccCCcccCHHHHHH-HcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999998 799999999999989998 99999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhcccccc
Q 006917 418 NRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKL 497 (625)
Q Consensus 418 ~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~pw~l 497 (625)
+|+.+++.+ ++++.+|. .+.|+++++.++.+++.+.++|++|+++.|++.+++|++.+|+|++..+||.+
T Consensus 391 ~R~~~~~~k----~~~~~~~~------~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kpw~~ 460 (673)
T PRK00133 391 SRTAGFINK----RFDGKLPD------ALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKL 460 (673)
T ss_pred HHHHHHHHH----hcCCCCCC------CcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 999999887 56655542 23478999999999999999999999999999999999999999999999998
Q ss_pred ccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCcccccCCcccchhhhccCCCccCCCCCccCCCCCC
Q 006917 498 YNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPL 577 (625)
Q Consensus 498 ~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~L 577 (625)
.+++.+++.+++++++++++.++++|+||||++|++||++||.+. ..+.+ +..+..|++++.+++|
T Consensus 461 ~~~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~~~---~~~~~-----------~~~~~~g~~~~~~~~l 526 (673)
T PRK00133 461 AKQDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLEE---LTWDD-----------AQQPLAGHPINKFKIL 526 (673)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCCCc---cChhh-----------hcCCCCCCCcCCCCcC
Confidence 876667788899999999999999999999999999999999852 12221 1124479999999999
Q ss_pred ccCCChHHHHHHHHHhcCch
Q 006917 578 FKELKDEDVRFFREKFAGSQ 597 (625)
Q Consensus 578 f~ki~~~~i~~~~~~~~~~~ 597 (625)
|+|++.+++++..+++++.+
T Consensus 527 f~~~~~~~~~~~~~~~~~~~ 546 (673)
T PRK00133 527 FTRIEDKQIEALIEASKEAA 546 (673)
T ss_pred CcCCCHHHHHHHHHHhhcch
Confidence 99999988877766655433
No 4
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.7e-109 Score=923.87 Aligned_cols=548 Identities=44% Similarity=0.797 Sum_probs=494.9
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006917 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKA 103 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 103 (625)
.++++||+|||||||.|||||+++.|+.+|+++||+|++|++|.|++|+||||+||+.+|++.|++|+++|+++.+.|++
T Consensus 2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 81 (556)
T PRK12268 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKE 81 (556)
T ss_pred CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999974779999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccc
Q 006917 104 VYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEK 183 (625)
Q Consensus 104 ~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~ 183 (625)
++++|||++|.|++|++++|.+.++++|.+|+++|+||++.+++|||+.|++||++++|.|+||. |++.+++|++||.
T Consensus 82 ~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~--c~~~~~~G~~ce~ 159 (556)
T PRK12268 82 DFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPY--CGYEGARGDQCDN 159 (556)
T ss_pred HHHHcCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCC--CCCcccCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9998999999999
Q ss_pred cCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccC
Q 006917 184 CGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLK 263 (625)
Q Consensus 184 cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~ 263 (625)
||+.+++.+|++|+|++||++++++.++||||+++++++.+.+++++.. .||+..++++.+||+++++||||||++.
T Consensus 160 cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~---~~p~~~~~~~~~~l~~~l~Dw~ISR~~~ 236 (556)
T PRK12268 160 CGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSG---DWPPNVLNFTLNWLKEGLKPRAITRDLD 236 (556)
T ss_pred ccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhcc---CCCHHHHHHHHHHHhCCCCCcCceeeCC
Confidence 9999999999999999999999999999999999999999999998543 4789999999999998999999999999
Q ss_pred CCcccCCCCCCCceeeeeccccchHHHhccCC------ChhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCC
Q 006917 264 WGVPVPHEKFKDKVFYVWFDAPIGYISITSCY------TPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEEN 337 (625)
Q Consensus 264 WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~------~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~ 337 (625)
||+|+|+.+.+++++|||||++++|++....+ +++|..||.+ .+...+|++|+||++||+++||+++++.+.+
T Consensus 237 WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~d-s~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~ 315 (556)
T PRK12268 237 WGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLD-PETKSYYFIGKDNIPFHSIIWPAMLLGSGEP 315 (556)
T ss_pred CCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCC-CCCeEEEEEeeccCcchHHHHHHHHHhcCCC
Confidence 99999955557899999999999999764332 2368889942 3345699999999999999999999999865
Q ss_pred ccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHH
Q 006917 338 WTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFV 417 (625)
Q Consensus 338 ~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~ 417 (625)
+++|+.+++||||+++|+|||||+||+|+|.|+++ .||+|++|||+++.++.++|++|+++.+....|++++++++|++
T Consensus 316 ~~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~-~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~ 394 (556)
T PRK12268 316 LKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALE-RYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLV 394 (556)
T ss_pred CCCCCEeeccCCEEECCeeeccCCCcccCHHHHHH-HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHH
Confidence 66889999999999999999999999999999998 79999999999998889999999999998888999999999999
Q ss_pred HHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhcccccc
Q 006917 418 NRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKL 497 (625)
Q Consensus 418 ~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~pw~l 497 (625)
+|+.+++.+ ..++.+|. ......|+|+++.++.+++.+.++|++|+++.|++.+++|++.+|+|++..+||.+
T Consensus 395 ~r~~~~~~~----~~~~~~~~---~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~kpw~~ 467 (556)
T PRK12268 395 NRVLSFIEK----YFGGIVPP---GELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKL 467 (556)
T ss_pred HHHHHHHHH----hcCCcCCC---CcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCChhh
Confidence 999999876 34444442 12356789999999999999999999999999999999999999999999999988
Q ss_pred ccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCcccccCCcccchhhhccCCCccCCCCCccCCCCCC
Q 006917 498 YNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPL 577 (625)
Q Consensus 498 ~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~L 577 (625)
.+++...+..+++++.++++.++++|+||||++||+||++||.+......|.+ +..++.|++++.+++|
T Consensus 468 ~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~~~~~~~~w~~-----------~~~~~~g~~i~~~~~l 536 (556)
T PRK12268 468 AKTDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIEKLTWES-----------LKPLLPGHPINKPEPL 536 (556)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCCCCCcccchhh-----------hcCCCCCCCCCCCCCC
Confidence 76566667788999999999999999999999999999999973211111211 1135679999999999
Q ss_pred ccCCChHHHHHHHHHhcCc
Q 006917 578 FKELKDEDVRFFREKFAGS 596 (625)
Q Consensus 578 f~ki~~~~i~~~~~~~~~~ 596 (625)
|+|++.++++++++.+++.
T Consensus 537 f~r~~~~~~~~~~~~~~~~ 555 (556)
T PRK12268 537 FKKIDDEQIEEELERLGGA 555 (556)
T ss_pred CCCCCHHHHHHHHHHhcCC
Confidence 9999999999988887764
No 5
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-112 Score=837.80 Aligned_cols=563 Identities=63% Similarity=1.118 Sum_probs=534.8
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHH
Q 006917 15 RVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQIC 94 (625)
Q Consensus 15 ~~~~~p~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~ 94 (625)
+.+..|..+++.++||++.||+|..||+|++-++++.|||+|||.+.+|+...+++|||++|++++.+|.++|.+|+++|
T Consensus 4 ~~~ilp~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elc 83 (567)
T KOG1247|consen 4 KDPILPAPNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELC 83 (567)
T ss_pred CCCcccCCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHH
Confidence 34477888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccC
Q 006917 95 DKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYD 174 (625)
Q Consensus 95 ~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~ 174 (625)
++++..++..+++++|++|.|.||+.+.+.+.+|.+|.+|+++|+.-+..-.+.||..|++|++|++|+|+||. |+|+
T Consensus 84 dKyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~--C~yd 161 (567)
T KOG1247|consen 84 DKYHGIHKVVYDWFKIDFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPF--CGYD 161 (567)
T ss_pred HhcchhHHHHHHhhcccccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCC--CCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred CCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCC
Q 006917 175 SARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLK 254 (625)
Q Consensus 175 ~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 254 (625)
+|+||+|+.||+.+++.+|.+|+|..|...++++.+.|.||.|+++++++.+|+++......|.+|+.++..+||+.||.
T Consensus 162 ~ARGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~ 241 (567)
T KOG1247|consen 162 DARGDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLK 241 (567)
T ss_pred cccchhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHcccc
Confidence 99999999999999999999999999999999999999999999999999999998876668999999999999999999
Q ss_pred CcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcC
Q 006917 255 PRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGT 334 (625)
Q Consensus 255 d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~ 334 (625)
++||||++.||+|||.++++++|+||||||++||+|.+.++.++|++||++|+.+++++|+|||++.||+++||+++++.
T Consensus 242 pRCiTRDLkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt 321 (567)
T KOG1247|consen 242 PRCITRDLKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGT 321 (567)
T ss_pred ccccccccccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHH
Q 006917 335 EENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLG 414 (625)
Q Consensus 335 ~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~ 414 (625)
+.+|++-+++.+..+|+.+..|+|||+|..|...++-+.+++++++||||++.+|+++|..|||++|..+.|++|.+++|
T Consensus 322 ~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLG 401 (567)
T KOG1247|consen 322 EENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLG 401 (567)
T ss_pred CCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhccc
Q 006917 415 NFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQF 494 (625)
Q Consensus 415 n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~p 494 (625)
||++|+++++.. .++|.+|... ...-++.+++.++.+..++.++|+.-+++.|++.+|++.+.+|.|++.++.
T Consensus 402 NFvNR~l~fv~~----~~~g~Vp~~~---~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~~~ 474 (567)
T KOG1247|consen 402 NFVNRVLKFVAA----KYNGVVPEME---LTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQENTD 474 (567)
T ss_pred HHHHHHHHHHHH----hhCCccccee---ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcccc
Confidence 999999999987 6899998742 223377899999999999999999999999999999999999999999999
Q ss_pred cccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCcccccCCcccchhhhccCCCccCCCCCccCCC
Q 006917 495 WKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMS 574 (625)
Q Consensus 495 w~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 574 (625)
|++...+++++..++.++++++..++.||+|+||.++.+|+.+|+.|... +.+ +.+..+++||+|+++
T Consensus 475 ~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp~~~---~~~---------~~~~~l~~gH~ig~~ 542 (567)
T KOG1247|consen 475 NKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLPETL---FPD---------RFICRLLAGHRIGTP 542 (567)
T ss_pred cchhhhcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCCcccc---CCC---------ccceeecCcCccCCc
Confidence 99988888899999999999999999999999999999999999998532 222 334568899999999
Q ss_pred CCCccCCChHHHHHHHHHhcCchh
Q 006917 575 SPLFKELKDEDVRFFREKFAGSQA 598 (625)
Q Consensus 575 ~~Lf~ki~~~~i~~~~~~~~~~~~ 598 (625)
++||++++.++|++++.++++.+.
T Consensus 543 ~pLFq~l~~~qiee~r~k~gg~q~ 566 (567)
T KOG1247|consen 543 SPLFQKLDEDQIEEWRAKFGGQQS 566 (567)
T ss_pred cHHHHhcCHHHHHHHHHhhcCCCC
Confidence 999999999999999999987653
No 6
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=1.2e-108 Score=914.67 Aligned_cols=525 Identities=43% Similarity=0.789 Sum_probs=483.4
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006917 27 ILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYN 106 (625)
Q Consensus 27 ~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 106 (625)
++||+|||||||.+||||+++ ++.+|+++||+|++|++|.+++|+||||+||+.+|+++|++|+++++.+.+.|+++++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~-~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~ 79 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYT-TILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWK 79 (530)
T ss_pred CEEecCCCCCCCCcccchhHH-HHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999997 6779999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccCC
Q 006917 107 WFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGK 186 (625)
Q Consensus 107 ~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~ 186 (625)
+|||++|.|++|+++.|...++++|.+|.++|+||++.++++||+.|++|++|++|+|+||. |++++++|++||.||.
T Consensus 80 ~LgI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~--c~~~~~~g~~ce~cg~ 157 (530)
T TIGR00398 80 WLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPK--CGSEDARGDHCEVCGR 157 (530)
T ss_pred HhCCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCC--CCCcccccchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccC-CC
Q 006917 187 LLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLK-WG 265 (625)
Q Consensus 187 ~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~-WG 265 (625)
.++|.++++|+|++||++++++.++||||+|++|++.|++++++++....|+++..+.+.+||.++++||||||++. ||
T Consensus 158 ~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WG 237 (530)
T TIGR00398 158 HLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWG 237 (530)
T ss_pred cCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCC
Confidence 99999999999999999999999999999999999999999997664445788888899999999999999999999 99
Q ss_pred cccCCCCCCCceeeeeccccchHHHhccCCC----hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCccCc
Q 006917 266 VPVPHEKFKDKVFYVWFDAPIGYISITSCYT----PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLM 341 (625)
Q Consensus 266 i~vP~~~~~~~viyvWfDa~~~yi~~~~~~~----~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~ 341 (625)
||+|.+ +++++||||||+++|++.. ++. .+|++||+.+.|++++|++|+||++||+++||+|++++|. ++|
T Consensus 238 ipvP~~--~~~~~yvW~da~~~y~~~~-~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~--~~~ 312 (530)
T TIGR00398 238 IPVPND--PNKVVYVWFDALIGYISSL-GILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGL--PLP 312 (530)
T ss_pred eeCCCC--CCcEEEEeecchHHhHhhh-ccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCC--CCC
Confidence 999988 7899999999999999865 332 4689999875578899999999999999999999999985 579
Q ss_pred ceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHH
Q 006917 342 KTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVL 421 (625)
Q Consensus 342 ~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~ 421 (625)
+.+++||||+.+|+|||||+||+|+|.|+++ .||+|++|||+++.++..+|++|+++.+.+..|++++++++|+++|+.
T Consensus 313 ~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~-~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~ 391 (530)
T TIGR00398 313 TQVFSHGYLTVEGGKMSKSLGNVVDPSDLLA-RFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTL 391 (530)
T ss_pred CEEEeeccEEECCceecccCCceecHHHHHH-HcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 799999999999988889999999999999999999999999999999
Q ss_pred HhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhccccccccCC
Q 006917 422 SFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYNED 501 (625)
Q Consensus 422 ~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~pw~l~k~~ 501 (625)
+++.+ ++++.+|.. ....+.|+++++.++.+++.+.++|++|+++.|++++++|++.+|+|++..+||.+.+++
T Consensus 392 ~~~~~----~~~~~~~~~--~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~~ 465 (530)
T TIGR00398 392 GFIKK----YFNGVLPSE--DITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQS 465 (530)
T ss_pred HHHHH----hcCCcCCCC--cccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCCh
Confidence 99887 445555432 123467899999999999999999999999999999999999999999999999988654
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCcccccCCcccchhhhccCCCccCCCCCccCCCCCCccCC
Q 006917 502 QGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPLFKEL 581 (625)
Q Consensus 502 ~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~Lf~ki 581 (625)
. ++.++++++.+++++++++|+||||++|++||++||.+.... . .. .+..|+.++.+.+||+|+
T Consensus 466 ~-~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~----~----------~~-~~~~~~~i~~~~~lf~ki 529 (530)
T TIGR00398 466 P-RLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFELEWD----F----------KL-KLLEGHKLNKAEPLFSKI 529 (530)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCChhhh----h----------hc-CCCCCCCCCCCCCCCCCC
Confidence 4 677889999999999999999999999999999999754311 0 01 244699999999999998
Q ss_pred C
Q 006917 582 K 582 (625)
Q Consensus 582 ~ 582 (625)
+
T Consensus 530 ~ 530 (530)
T TIGR00398 530 E 530 (530)
T ss_pred C
Confidence 6
No 7
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=1.6e-107 Score=898.19 Aligned_cols=508 Identities=24% Similarity=0.460 Sum_probs=449.8
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006917 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKA 103 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 103 (625)
+++|+||+|||||||.|||||+++ ++.+|+++||+|++|++|.|++|+||||+||+.+|++.|++|+++|+++++.|++
T Consensus 68 ~~~~~ittp~pY~NG~~HiGHa~~-~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~ 146 (616)
T PLN02224 68 ADTFVLTTPLYYVNAPPHMGSAYT-TIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRT 146 (616)
T ss_pred CCeEEEeCCCCCCCCCCchhccHH-HHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 466999999999999999999998 5779999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccc
Q 006917 104 VYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEK 183 (625)
Q Consensus 104 ~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~ 183 (625)
+++.|||++|.|+||+++.|.+.|+++|.+|+++|+||++.+++|||++|++|+++.++.
T Consensus 147 ~~~~l~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~-------------------- 206 (616)
T PLN02224 147 LWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELL-------------------- 206 (616)
T ss_pred HHHHcCCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHc--------------------
Confidence 999999999999999999999999999999999999999999999999999998875532
Q ss_pred cCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCccccccc-
Q 006917 184 CGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDL- 262 (625)
Q Consensus 184 cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~- 262 (625)
..+.|..||+++++++++||||+|++|++.|++|+++++.. .+|....+.+.+||++||+||||||+.
T Consensus 207 ----------~~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~-~~p~~~~~~~~~~l~~gL~d~~ISR~~~ 275 (616)
T PLN02224 207 ----------ENNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNPRF-VQPSYRLNEVQSWIKSGLRDFSISRALV 275 (616)
T ss_pred ----------CCCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCCCc-cCCHHHHHHHHHHHhcCCCCccccCCCC
Confidence 12457778999999999999999999999999999887642 357777788899999999999999984
Q ss_pred CCCcccCCCCCCCceeeeeccccchHHHhccCCChh------hHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCC
Q 006917 263 KWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPD------WEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEE 336 (625)
Q Consensus 263 ~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~------~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~ 336 (625)
.||||||.+ +++||||||||++||||++..+..+ +..||+ .+ +||+||||++||+++|||+|+++|+
T Consensus 276 ~WGIpvP~~--~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~--~~---v~~iGKDii~fH~i~wpa~l~~~g~ 348 (616)
T PLN02224 276 DWGIPVPDD--DKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWP--AS---LHLIGKDILRFHAVYWPAMLMSAGL 348 (616)
T ss_pred CCceECCCC--CCcEEEEehhhHHHHHHHhcccccccccchhhccCCC--cc---eEEEeecccccHHHHHHHHHHHCCC
Confidence 899999977 7999999999999999987654321 344674 35 9999999999999999999999886
Q ss_pred CccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHH
Q 006917 337 NWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNF 416 (625)
Q Consensus 337 ~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~ 416 (625)
++|+.+++||||+++|+|||||+||+|+|.++++ .||+|++||||++.+++.+|++|+++.+.+++|++|++++||+
T Consensus 349 --~~P~~i~~~g~l~~eG~KMSKS~GN~i~p~e~l~-~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNl 425 (616)
T PLN02224 349 --ELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQ-KFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNL 425 (616)
T ss_pred --CCCcEEEecccEecCCccccccCCccCCHHHHHH-HcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999998 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhccccc
Q 006917 417 VNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWK 496 (625)
Q Consensus 417 ~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~pw~ 496 (625)
++|++.++.+ ++++.+|... .....++++++.++.+++.+.++|+++++++|+..+++|++.+|+|++..+||+
T Consensus 426 l~R~l~~~~k----~~~~~~~~~~--~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~~PW~ 499 (616)
T PLN02224 426 LNRTLGLLKK----NCESTLVEDS--TVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWF 499 (616)
T ss_pred HHHHHHHHHH----hcCCcCCCcc--ccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 9999999988 6776665421 112346789999999999999999999999999999999999999999999999
Q ss_pred cccCC---HhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCccc--ccCCcccchhhhccCCCccCCCCCcc
Q 006917 497 LYNED---QGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETK--FSLSDENGDLERARKPWEILPAGHRI 571 (625)
Q Consensus 497 l~k~~---~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~l 571 (625)
+.+++ .+++.+++++++++++++++||+||||++|++||++||.+.+.. ..+.+ ..++.++.|+.+
T Consensus 500 l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~~~~~~~~~~~~~---------~~~~~~~~g~~i 570 (616)
T PLN02224 500 LFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYSEDQFNSITWSD---------TKWGGLKGGQVM 570 (616)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCCCcccccccchhh---------hccccCCCCCCC
Confidence 87653 24567788999999999999999999999999999999864321 11211 013345678999
Q ss_pred CCCCCCccCCChHHHHH
Q 006917 572 GMSSPLFKELKDEDVRF 588 (625)
Q Consensus 572 ~~~~~Lf~ki~~~~i~~ 588 (625)
+.+.+||+|++.++++.
T Consensus 571 ~~~~~Lf~ri~~~~~~~ 587 (616)
T PLN02224 571 EQASPVFARIELNPEKE 587 (616)
T ss_pred CCCCCCCCCcCcchHHH
Confidence 99999999999665443
No 8
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.1e-106 Score=911.44 Aligned_cols=507 Identities=29% Similarity=0.525 Sum_probs=456.6
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006917 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKA 103 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 103 (625)
+++++||+|+|||||++||||+++ ++.+|+++||+|++|++|.|++|+||||+||+.+|++.|++|+++|+++++.|++
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~-~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~ 81 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYT-TIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKE 81 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchH-HHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999997 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccc
Q 006917 104 VYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEK 183 (625)
Q Consensus 104 ~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~ 183 (625)
+|++|||++|.|+||+++.|...++++|.+|.++|+||++.++++||+.|++||+++++
T Consensus 82 ~l~~lgI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l--------------------- 140 (648)
T PRK12267 82 LWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQL--------------------- 140 (648)
T ss_pred HHHHcCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHh---------------------
Confidence 99999999999999999999999999999999999999999999999999999998763
Q ss_pred cCCCCCCCccCC-CccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHH-HHHhcCCCCcccccc
Q 006917 184 CGKLLNPTELKD-PRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTY-AWLKDGLKPRCITRD 261 (625)
Q Consensus 184 cg~~~~~~~l~~-~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~d~~IsR~ 261 (625)
++ |+|++||++++++.++||||+|++|+++|.+|+++++.. .||++..+.+. +||++||+||||||+
T Consensus 141 ----------~~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~~l~~~l~D~~ISR~ 209 (648)
T PRK12267 141 ----------VDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDF-IQPESRKNEMINNFIKPGLEDLSISRT 209 (648)
T ss_pred ----------ccCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcc-cCCHHHHHHHHHHHhhCCCCCcccCCC
Confidence 33 577789999999999999999999999999999876431 46888888888 999999999999998
Q ss_pred -cCCCcccCCCCCCCceeeeeccccchHHHhccCCC----hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCC
Q 006917 262 -LKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYT----PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEE 336 (625)
Q Consensus 262 -~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~----~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~ 336 (625)
..||||||++ +++||||||||+++|++++ +|+ ++|++||| .+ +||+||||++||+++||++++++|.
T Consensus 210 ~~~WGipvP~~--~~~v~yVWfDA~~~y~s~~-~~~~~~~~~~~~~wp--~~---~~~~GkDii~fH~i~wpa~l~~~~~ 281 (648)
T PRK12267 210 SFDWGIPVPFD--PKHVVYVWIDALLNYITAL-GYGSDDDELFKKFWP--AD---VHLVGKDILRFHAIYWPIMLMALGL 281 (648)
T ss_pred CCCcceECCCC--CCCEEEEcccchHHHHHHc-CCCCCCchHHHhhcc--cc---eEEEeeeecchhHHHHHHHHHhCCC
Confidence 4799999986 6999999999999999987 554 36899995 46 9999999999999999999999985
Q ss_pred CccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHH
Q 006917 337 NWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNF 416 (625)
Q Consensus 337 ~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~ 416 (625)
++|+++++||||+.+|+|||||+||+|+|.++++ .||+|+|||||++.+++++|++||++.+.+++|++|+++++|+
T Consensus 282 --~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~d~l~-~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl 358 (648)
T PRK12267 282 --PLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELVD-RYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNL 358 (648)
T ss_pred --CCCcEEEecceEEECCceecccCCcccCHHHHHH-HcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHH
Confidence 5899999999999999999999999999999998 7999999999999889999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhccccc
Q 006917 417 VNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWK 496 (625)
Q Consensus 417 ~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~pw~ 496 (625)
++|+.+++.+ ++++.+|.. ......|+++++.++.+.+.+.++|++|++++|++.+++|++.+|+|++..+||.
T Consensus 359 ~~R~~~~~~~----~~~~~~p~~--~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~kpW~ 432 (648)
T PRK12267 359 LNRTVAMINK----YFDGEIPAP--GNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDETAPWV 432 (648)
T ss_pred HHHHHHHHHH----hcCCcCCCC--CCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 9999999887 567777642 1234568999999999999999999999999999999999999999999999999
Q ss_pred cccC--CHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCcccccCCcccchhhhccCCCccCCCCCccCCC
Q 006917 497 LYNE--DQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMS 574 (625)
Q Consensus 497 l~k~--~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 574 (625)
+.++ +..++++++++++++++.++++|+||||++|++||++||.+... ..+.+ ...+..+..|++++.+
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~~~~~-~~~~~--------~~~~~~~~~g~~~~~~ 503 (648)
T PRK12267 433 LAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGLEEEL-TSWES--------LLEWGGLPAGTKVAKG 503 (648)
T ss_pred hhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCCCccc-cchhh--------hhhhccccCCCccCCC
Confidence 8764 44677889999999999999999999999999999999985322 12211 0113346679999999
Q ss_pred CCCccCCChH-HHHHH
Q 006917 575 SPLFKELKDE-DVRFF 589 (625)
Q Consensus 575 ~~Lf~ki~~~-~i~~~ 589 (625)
++||+|++++ .++..
T Consensus 504 ~~lf~k~~~~~~~~~~ 519 (648)
T PRK12267 504 EPLFPRIDVEEEIAYI 519 (648)
T ss_pred CCCcCCCCcHHHHHHH
Confidence 9999999975 45433
No 9
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-105 Score=789.69 Aligned_cols=480 Identities=27% Similarity=0.459 Sum_probs=428.2
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006917 23 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHK 102 (625)
Q Consensus 23 ~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 102 (625)
+.+++++|||+.|||..|||||++++ |.+|+++||++++|..|.|.+|||+||+||+.+|+..|.+|.++||+.+++|.
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~-llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~ 115 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYST-LLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFR 115 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHH-HHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHH
Confidence 44589999999999999999999986 55999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccc-cCCCCCccccCCCCCccc
Q 006917 103 AVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVE-GSCPTLGCNYDSARGDQC 181 (625)
Q Consensus 103 ~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~-g~cp~~~c~~~~~~g~~c 181 (625)
++++.+||.|+.|+|||++.|...|+++|..+.++|+||.+.+++|||++||+|++++.|. ..||.
T Consensus 116 qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~------------- 182 (578)
T KOG0436|consen 116 QLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPP------------- 182 (578)
T ss_pred HHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCC-------------
Confidence 9999999999999999999999999999999999999999999999999999999998874 44543
Q ss_pred cccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccc
Q 006917 182 EKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRD 261 (625)
Q Consensus 182 e~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~ 261 (625)
|+ ++...+|++++++++++|||+||+|+..|.+++++++.+ ..|....+.+.+||+.||+|++|||.
T Consensus 183 ---gk---------~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~f-vqPs~~~~qVl~~lktglpDlSISRp 249 (578)
T KOG0436|consen 183 ---GK---------VVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRF-VQPSYFHNQVLSWLKTGLPDLSISRP 249 (578)
T ss_pred ---Cc---------eeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCc-cCchHHHHHHHHHHHcCCCcccccCh
Confidence 11 234457999999999999999999999999999999864 34666667889999999999999994
Q ss_pred ---cCCCcccCCCCCCCceeeeeccccchHHHhccCCCh-------hhHhhcCCCCCcceEEEEeecccchhHhHHHHHh
Q 006917 262 ---LKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTP-------DWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTL 331 (625)
Q Consensus 262 ---~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~-------~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l 331 (625)
..||||+|++ +.|+|||||||++|||+.. +++. .+..+||. . +|+|||||++||++||||||
T Consensus 250 sarl~WGIPvP~d--dsQtIYVWfDAL~nYiSvi-g~~~~~~N~k~~ls~~wPa--t---~HvIGKDIlrFHavYWPafL 321 (578)
T KOG0436|consen 250 SARLDWGIPVPGD--DSQTIYVWFDALLNYISVI-GYPNKQQNLKTALSFGWPA--T---LHVIGKDILRFHAVYWPAFL 321 (578)
T ss_pred hhhcccCCCCCCC--CcceEEEeHHHHhhHHHhh-cCCchhccccceeecCCCc--e---eeehhhhhhhhhhhhhHHHH
Confidence 7899999987 7999999999999999986 4542 46678964 4 99999999999999999999
Q ss_pred hcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHH
Q 006917 332 LGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLN 411 (625)
Q Consensus 332 ~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~ 411 (625)
|++|++ +|+.|++||||+.+|.|||||+||||+|.++++ +||+|++||||++++..+.|.||+.+.+....|..|++
T Consensus 322 maAGlp--lP~~I~vHghwt~ngmKMsKSLGNvvdP~~l~~-kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~ 398 (578)
T KOG0436|consen 322 MAAGLP--LPKMIFVHGHWTKNGMKMSKSLGNVVDPFELVQ-KYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLAN 398 (578)
T ss_pred HhcCCC--CccEEEEeeeeeecceecchhhccccCHHHHHH-HhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHH
Confidence 999985 899999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHH
Q 006917 412 NLGNFVNRVLS--FIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYL 489 (625)
Q Consensus 412 ~l~n~~~R~~~--~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~ 489 (625)
++||+++|+++ +..++ ...+.+-.. ....+.+..|.+.+.++++.+.+.+++|.+.+|++.+.++++.+|.|+
T Consensus 399 ~lG~LlnRc~gkkln~sn---~e~~l~~~s--~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlv 473 (578)
T KOG0436|consen 399 TLGNLLNRCLGKKLNISN---CESTLVVDS--PTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLV 473 (578)
T ss_pred HHHHHHHHHhhcccChhc---cccccccCC--cchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhhh
Confidence 99999999998 33331 011111111 112223345889999999999999999999999999999999999999
Q ss_pred HhccccccccCC---HhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCccc
Q 006917 490 QESQFWKLYNED---QGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETK 545 (625)
Q Consensus 490 ~~~~pw~l~k~~---~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~ 545 (625)
+..+||++.++. ...+..++..+++++|+++++|+||+|.+|.+++++||++.+++
T Consensus 474 q~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvsk~qr 532 (578)
T KOG0436|consen 474 QQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVSKDQR 532 (578)
T ss_pred hhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCChhhc
Confidence 999999998653 35667788888999999999999999999999999999988765
No 10
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=1.5e-100 Score=809.08 Aligned_cols=385 Identities=41% Similarity=0.805 Sum_probs=341.7
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006917 27 ILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYN 106 (625)
Q Consensus 27 ~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 106 (625)
|+||+|+|||||.|||||++ ++|.+|+++||+|++|++|+|++|+|+||+||+.+|+++|++|+++|+++++.|+++++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~-~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~ 79 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLY-PYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLE 79 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHH-HHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhH-HHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999 57889999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccCC
Q 006917 107 WFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGK 186 (625)
Q Consensus 107 ~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~ 186 (625)
++||++|.|+||+++.|++.|+++|++|+++|+||++++++|||++|++|+++++|+|+||. |+++.++|++||.||+
T Consensus 80 ~~~I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~--C~~~~a~g~~Ce~cG~ 157 (391)
T PF09334_consen 80 ALNISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPY--CGSDKARGDQCENCGR 157 (391)
T ss_dssp HTT---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETT--T--SSCTTTEETTTSS
T ss_pred HcCCCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccC--cCccccCCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCc
Q 006917 187 LLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGV 266 (625)
Q Consensus 187 ~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi 266 (625)
.++|.+|++|+|..||++++++++++|||+|++|+++|.+|+++.+.. |+++.++.+.+||+++|+||||||+.+|||
T Consensus 158 ~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~--~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI 235 (391)
T PF09334_consen 158 PLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDF--PPPRVREIVRNWLKEGLPDLSISRPLDWGI 235 (391)
T ss_dssp BEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTS--SHHHHHHHHHHHHHT----EE-ECTTSSSE
T ss_pred CcccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCC--CChhHHHHHHHHhhcccCceeeecCCCCcc
Confidence 999999999999999999999999999999999999999999988643 889999999999999999999999999999
Q ss_pred ccCCCCCCCceeeeeccccchHHHhccCCC------hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCccC
Q 006917 267 PVPHEKFKDKVFYVWFDAPIGYISITSCYT------PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTL 340 (625)
Q Consensus 267 ~vP~~~~~~~viyvWfDa~~~yi~~~~~~~------~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~ 340 (625)
|+|.+ +++||||||||+++|++++..+. ..|++||..+.+++++||+||||++||+++|||||+++|+ ++
T Consensus 236 ~vP~~--~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~--~l 311 (391)
T PF09334_consen 236 PVPGD--PGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGL--PL 311 (391)
T ss_dssp EETTE--EEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB----
T ss_pred eeecc--CCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccC--CC
Confidence 99955 79999999999999999875443 4689999545788999999999999999999999999876 48
Q ss_pred cceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHH
Q 006917 341 MKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRV 420 (625)
Q Consensus 341 ~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~ 420 (625)
|+++++||||+++|+|||||+||+|++.++++ .||+|++||||++.+|..+|.+|+++.|.+++|++|++++||+++|+
T Consensus 312 P~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~-~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 312 PRRIVVHGFLTLDGEKMSKSRGNVIWPDDLLE-EYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp -SEEEEE--EEETTCCEETTTTESSBHHHHHH-HH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred CCEEEeeeeEEECCeeccccCCcccCHHHHHH-hCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 99999999999999999999999999999998 69999999999999999999999999999999999999999999998
Q ss_pred H
Q 006917 421 L 421 (625)
Q Consensus 421 ~ 421 (625)
+
T Consensus 391 ~ 391 (391)
T PF09334_consen 391 L 391 (391)
T ss_dssp H
T ss_pred C
Confidence 5
No 11
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.8e-96 Score=810.89 Aligned_cols=502 Identities=29% Similarity=0.537 Sum_probs=448.2
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006917 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAV 104 (625)
Q Consensus 25 ~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 104 (625)
++++||+|||||||.+||||+++ ++.+|+++||+|++|++|.+++|+||||+||+.+|+++|+++.++|+++++.|+++
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~-~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 79 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYT-TLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRL 79 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHH-HHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 46999999999999999999997 67799999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCcccccc
Q 006917 105 YNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKC 184 (625)
Q Consensus 105 ~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~c 184 (625)
|++|||++|.|++|+++.|...|+++|.+|.++|++|++.+.+|||++|+++++++++..
T Consensus 80 l~~l~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~-------------------- 139 (511)
T PRK11893 80 WEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIE-------------------- 139 (511)
T ss_pred HHHhCCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcC--------------------
Confidence 999999999999999999999999999999999999999999999999999999876431
Q ss_pred CCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCccccc-ccC
Q 006917 185 GKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITR-DLK 263 (625)
Q Consensus 185 g~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR-~~~ 263 (625)
+ .|+|++||+++++++++||||+++.+++.+.++++++... .+|+..++.+.+|++++++|||||| ++.
T Consensus 140 -----~----~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~l~~~~~D~~isR~~~~ 209 (511)
T PRK11893 140 -----D----GYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDF-IQPASRRNEVISFVKSGLKDLSISRTNFD 209 (511)
T ss_pred -----C----CCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCc-cCCHHHHHHHHHHHHCCCCCcccCCCCCC
Confidence 1 1689999999999999999999999999999999875321 3577777888899999999999999 899
Q ss_pred CCcccCCCCCCCceeeeeccccchHHHhccCCC-------hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCC
Q 006917 264 WGVPVPHEKFKDKVFYVWFDAPIGYISITSCYT-------PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEE 336 (625)
Q Consensus 264 WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~-------~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~ 336 (625)
||+|+|++ +++++||||||+++|++... ++ ++|.+||+ .| +|++|+||++||+++|||++++++.
T Consensus 210 WGipiP~~--~~~~~~vWfda~~~y~s~~~-~p~~~~~~~~~~~~~~~--~D---~~~~G~D~~~~h~~~~~a~~~a~~~ 281 (511)
T PRK11893 210 WGIPVPGD--PKHVIYVWFDALTNYLTALG-YPDDEELLAELFNKYWP--AD---VHLIGKDILRFHAVYWPAFLMAAGL 281 (511)
T ss_pred CCccCCCC--CCceEEEEecCcHHHHhHhc-cccccccchhHHHhcCC--Cc---ceEecccccccchhHHHHHHHhCCC
Confidence 99999986 79999999999999999753 32 35889995 56 8999999999999999999999865
Q ss_pred CccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHH
Q 006917 337 NWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNF 416 (625)
Q Consensus 337 ~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~ 416 (625)
++|+.+++||||+.+|+|||||+||+|++.|+++ .||+|++||||++.+++++|++||++.+.+..|+++.++++|+
T Consensus 282 --~~p~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~-~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~ 358 (511)
T PRK11893 282 --PLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVD-EYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNL 358 (511)
T ss_pred --CCCCEEEeeccEEECCeeecccCCcEEcHHHHHH-HcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999999999999998 7999999999999889999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhccccc
Q 006917 417 VNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWK 496 (625)
Q Consensus 417 ~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~pw~ 496 (625)
++|+.+++.+ .+++.+|... .....|+++++.+..+.+.+.++|++|+++.|+..+++|++.+|+|++..+||.
T Consensus 359 ~~r~~~~~~~----~~~~~~~~~~--~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~~pw~ 432 (511)
T PRK11893 359 AQRTLSMIAK----NFDGKVPEPG--ALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQAPWS 432 (511)
T ss_pred HHHHHHHHHH----hcCCCCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCChh
Confidence 9999999886 3444444321 234567899999999999999999999999999999999999999999999998
Q ss_pred cccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCcccccCCcccchhhhccCCCccCCCCCccCCCCC
Q 006917 497 LYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSP 576 (625)
Q Consensus 497 l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 576 (625)
+.+++..++++++.++.++++.++++|+||||++|++||++||.+.+....+.+ . .+..++.|+.++.+.+
T Consensus 433 ~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~ 503 (511)
T PRK11893 433 LAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEEDENRDFAA-------L--SWGRLAPGTTLPKPEP 503 (511)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCCCcccccchhh-------h--hcccCCCCCCCCCCCC
Confidence 876666778899999999999999999999999999999999975433101111 0 1234567999999999
Q ss_pred CccCCCh
Q 006917 577 LFKELKD 583 (625)
Q Consensus 577 Lf~ki~~ 583 (625)
||+|+++
T Consensus 504 lf~~~~~ 510 (511)
T PRK11893 504 IFPRLEE 510 (511)
T ss_pred CccCCCC
Confidence 9999985
No 12
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=1.5e-86 Score=772.16 Aligned_cols=507 Identities=19% Similarity=0.257 Sum_probs=425.8
Q ss_pred ccccCCCCCCC--CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc--
Q 006917 11 ERNHRVAKLPV--PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE-- 86 (625)
Q Consensus 11 ~~~~~~~~~p~--~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-- 86 (625)
.|++...|.+. .++++|+|++|||||||.|||||+++.+ .+|+++||+||+|++|++++|||+||+||+..+++.
T Consensus 17 ~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~-~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~ 95 (861)
T TIGR00422 17 KWEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWS-IQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLG 95 (861)
T ss_pred HHHHCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHHHH-HHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhc
Confidence 45566666653 3567799999999999999999999965 599999999999999999999999999999988754
Q ss_pred --CCCH------------HHHHHHHHHHHHHHHhhcCccccc--ccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeee
Q 006917 87 --NCTT------------QQICDKYYAIHKAVYNWFNISFDE--FGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYC 150 (625)
Q Consensus 87 --g~~~------------~~~~~~~~~~~~~~~~~lgi~~D~--~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~ 150 (625)
|+++ .++++++...+++++++||+++|+ .+.|+++.|.+.|+++|.+|+++|+||++.++++||
T Consensus 96 ~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wc 175 (861)
T TIGR00422 96 AEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWD 175 (861)
T ss_pred ccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccC
Confidence 5555 477999999999999999999983 356999999999999999999999999999999999
Q ss_pred CCCCccccccccc-------------------------------------------------------------------
Q 006917 151 DTCKRFLADRLVE------------------------------------------------------------------- 163 (625)
Q Consensus 151 ~~~~~~l~~~~v~------------------------------------------------------------------- 163 (625)
|.|+++|++.+|+
T Consensus 176 p~~~t~lsd~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipi 255 (861)
T TIGR00422 176 PKLNTAISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPI 255 (861)
T ss_pred CCCCCcchHhHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCccee
Confidence 9999999998742
Q ss_pred ----------c-----CCCCCcccc----------------CCCCCccccccCCC------------------------C
Q 006917 164 ----------G-----SCPTLGCNY----------------DSARGDQCEKCGKL------------------------L 188 (625)
Q Consensus 164 ----------g-----~cp~~~c~~----------------~~~~g~~ce~cg~~------------------------~ 188 (625)
| .||. |+. -+..|..|+.||.+ .
T Consensus 256 i~~~~V~~~~GTG~V~~~Pa--h~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~ 333 (861)
T TIGR00422 256 IADEYVDMEFGTGAVKVTPA--HDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKI 333 (861)
T ss_pred eecCCCCcccCCCceEecCC--CChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeee
Confidence 1 1222 211 14568888888875 2
Q ss_pred CCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCccc
Q 006917 189 NPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPV 268 (625)
Q Consensus 189 ~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~v 268 (625)
.+.+...|+|+|||++++.+.++||||+++++++++++++++... ..+|++..+.+.+||++ ++|||||||+.||+||
T Consensus 334 ~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i-~~~P~~~~~~~~~wl~~-l~DW~ISRq~~WG~pi 411 (861)
T TIGR00422 334 EPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEI-KFVPKRMEKRYLNWLRN-IKDWCISRQLIWGHRI 411 (861)
T ss_pred eeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCe-EEEChHHHHHHHHHHhc-cccceeeeecccCCcc
Confidence 333456899999999999999999999999999999999985432 12578888899999984 9999999999999999
Q ss_pred CCCCC-----------------------------CCceeeeeccccchHHHhccCCC---hhhHhhcCCCCCcceEEEEe
Q 006917 269 PHEKF-----------------------------KDKVFYVWFDAPIGYISITSCYT---PDWEEWWKNPENVALYQFMG 316 (625)
Q Consensus 269 P~~~~-----------------------------~~~viyvWfDa~~~yi~~~~~~~---~~~~~~w~~p~d~~~i~~~G 316 (625)
|.|.+ +.+|+||||||+++|++.. +|+ ++|++||| .| +|++|
T Consensus 412 P~w~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~-g~p~~~~~~~~~~P--~d---~~~~G 485 (861)
T TIGR00422 412 PVWYCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTL-GWPDETKDLKKFYP--TD---LLVTG 485 (861)
T ss_pred eEEEECCCCcEEeccchHHhhhhhccCCcccEEECCCcccceeccchHHHHHh-CCCCChHHHhhcCC--cc---eeecc
Confidence 98542 1478999999999999875 565 36888995 46 99999
Q ss_pred ecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCC
Q 006917 317 KDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTL 395 (625)
Q Consensus 317 kD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~ 395 (625)
+||++||..+|+++.+++... .|++.+++|||++ .+|+|||||+||+|+|.++++ .||+|++||||++.++.++|++
T Consensus 486 ~Dii~fw~~~~~~~~~~~~~~-~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~-~ygaDalR~~l~~~~~~~~d~~ 563 (861)
T TIGR00422 486 YDIIFFWVARMIFRSLALTGQ-VPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIE-KYGADALRFTLASLVTPGDDIN 563 (861)
T ss_pred hhhhhHHHHHHHHHHHHhcCC-CchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHH-HhChHHHHHHHHhCCCCCCCce
Confidence 999999999999988877543 3569999999998 599999999999999999998 7999999999999888899999
Q ss_pred cCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 006917 396 FTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGL 475 (625)
Q Consensus 396 fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~ 475 (625)
||++.+... .+++++++|+. |...+..+ .+++ ++.. .......|+|+++.++.+++.+.++|++|+|+.|+
T Consensus 564 f~~~~~~~~--~~~~nkl~N~~-rf~~~~~~----~~~~-~~~~-~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~ 634 (861)
T TIGR00422 564 FDWKRVESA--RNFLNKLWNAS-RFVLMNLS----DDLE-LSGG-EEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAA 634 (861)
T ss_pred ecHHHHHHH--HHHHHHHHHHH-HHHHhccc----cccc-cccc-cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 999999875 56999999954 54444322 1211 2211 11245679999999999999999999999999999
Q ss_pred HHHHHHH--HHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 476 RIGMSIS--SEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 476 ~~i~~l~--~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
+.|++|+ ..+|+|++..+||.... +......++.++..+++.+++||+||||++||+||++|+.
T Consensus 635 ~~l~~f~~~~~~n~Yie~~k~~~~~~-~~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~ 700 (861)
T TIGR00422 635 KALYEFIWNDFCDWYIELVKYRLYNG-NEAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKE 700 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCcc
Confidence 9999997 68999999999998643 3345567888999999999999999999999999999985
No 13
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.1e-84 Score=756.61 Aligned_cols=506 Identities=20% Similarity=0.268 Sum_probs=409.9
Q ss_pred ccccCCCCCCC---CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc-
Q 006917 11 ERNHRVAKLPV---PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE- 86 (625)
Q Consensus 11 ~~~~~~~~~p~---~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~- 86 (625)
.|.+...|.+. .++++|+|+.|||||||.|||||+++.++ +|+++||+||+|++|+|++|||+||++++..+++.
T Consensus 31 ~W~~~~~f~~~~~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~-~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l 109 (1052)
T PRK14900 31 FWQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHALTATL-QDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKEL 109 (1052)
T ss_pred HHHHCCCccCCcccCCCCCEEEecCCCCCCCcchHHHHHhhHH-HHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHh
Confidence 34555556653 34667999999999999999999999755 99999999999999999999999999999877652
Q ss_pred ----CCC------------HHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeee
Q 006917 87 ----NCT------------TQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQL 148 (625)
Q Consensus 87 ----g~~------------~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~ 148 (625)
|++ |.++++++.+.++++|++||+++| +.+.|+++.|...++++|.+|+++|+||++.++++
T Consensus 110 ~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~ 189 (1052)
T PRK14900 110 KKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLIN 189 (1052)
T ss_pred hhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceec
Confidence 333 345788999999999999999888 44669999999999999999999999999999999
Q ss_pred eeCCCCccccccccccC--------------------------CCC--Cccc----------------------------
Q 006917 149 YCDTCKRFLADRLVEGS--------------------------CPT--LGCN---------------------------- 172 (625)
Q Consensus 149 y~~~~~~~l~~~~v~g~--------------------------cp~--~~c~---------------------------- 172 (625)
||+.|++.|++.+|+.. .|+ +||.
T Consensus 190 wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~i 269 (1052)
T PRK14900 190 WCPDCRTALSDLEVEHEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTF 269 (1052)
T ss_pred cCCCCCCCccHHHhcccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCee
Confidence 99999999999988631 111 0110
Q ss_pred -----c---C---------------------------------CCCCccccccCCC----------------------C-
Q 006917 173 -----Y---D---------------------------------SARGDQCEKCGKL----------------------L- 188 (625)
Q Consensus 173 -----~---~---------------------------------~~~g~~ce~cg~~----------------------~- 188 (625)
+ + +..|...+.+|.+ .
T Consensus 270 pIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~ 349 (1052)
T PRK14900 270 PIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRG 349 (1052)
T ss_pred EEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeec
Confidence 0 0 0112111122211 0
Q ss_pred -CCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcc
Q 006917 189 -NPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVP 267 (625)
Q Consensus 189 -~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~ 267 (625)
.+.+..+|+|||||++++.+.++||||+++.|++++++++++... ..+|.+..+.+.+||+ +++|||||||+.||+|
T Consensus 350 ~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~-~~~P~~~~~~~~~wl~-~l~DW~ISRqr~WG~P 427 (1052)
T PRK14900 350 AKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRT-RFIPEQWTNTYMAWMR-NIHDWCISRQLWWGHQ 427 (1052)
T ss_pred ceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCc-EEEChHHHHHHHHHHh-cCccceEEeecCCCce
Confidence 011235699999999999999999999999999999999976432 2368888888999997 6999999999999999
Q ss_pred cCCCCC-------------------------CCceeeeeccccchHHHhccCCCh---hhHhhcCCCCCcceEEEEeecc
Q 006917 268 VPHEKF-------------------------KDKVFYVWFDAPIGYISITSCYTP---DWEEWWKNPENVALYQFMGKDN 319 (625)
Q Consensus 268 vP~~~~-------------------------~~~viyvWfDa~~~yi~~~~~~~~---~~~~~w~~p~d~~~i~~~GkD~ 319 (625)
||.|.+ +.+||||||||+++|++.+ +|++ +|++||| .| +|++|+||
T Consensus 428 IP~w~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~-g~p~~~~~~~~~~P--~d---~~~~G~Di 501 (1052)
T PRK14900 428 IPAWYCPDGHVTVARETPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTM-GWPEQTDTLRTFYP--TS---VMETGHDI 501 (1052)
T ss_pred eCeEEcCCCcEEecccccccccccCccceecCCceEEEEEcCChHHHHHH-cCCCchHHHHhhCC--ch---hhcccccH
Confidence 998732 4599999999999999876 4643 5888996 46 89999999
Q ss_pred cchhHhHHHHHhhcCCC---CccCcceEEeeeeeec-CCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCC
Q 006917 320 APFHTVMFPSTLLGTEE---NWTLMKTISVTEYLNY-EAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTL 395 (625)
Q Consensus 320 ~~fH~~~~pa~l~a~~~---~~~~~~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~ 395 (625)
++| |+++++++++ ...|++.+++||||+. +|+|||||+||+|+|.++++ .||+|+|||||++.++.++|++
T Consensus 502 i~~----W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe-~yGaDalR~~L~~~~~~g~D~~ 576 (1052)
T PRK14900 502 IFF----WVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITE-QYGADALRFTLAALTAQGRDIK 576 (1052)
T ss_pred HhH----HHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHH-HhCcHHHHHHHHhcCCCCCCCc
Confidence 976 6666666553 1235699999999985 99999999999999999998 7999999999999889999999
Q ss_pred cCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCC--CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 006917 396 FTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGY--GSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQ 473 (625)
Q Consensus 396 fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~--~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~ 473 (625)
||++.+... .+++++++| +.|+..+..+ .+ ++..+.. ......|+|+++.++.+++.+.++|++|+|+.
T Consensus 577 fs~~~l~~~--~~f~nkl~N-~~R~~~~~~~----~~~~~~~~~~~--~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~ 647 (1052)
T PRK14900 577 LAKERIEGY--RAFANKLWN-ASRFALMNLS----GYQERGEDPAR--LARTPADRWILARLQRAVNETVEALEAFRFND 647 (1052)
T ss_pred ccHHHHHHH--HHHHHHHHH-HHHHHHHhhh----ccCcccccccc--cccCHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999998653 579999999 5676655433 12 2222211 12346799999999999999999999999999
Q ss_pred HHHHHHHHH--HHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 474 GLRIGMSIS--SEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 474 a~~~i~~l~--~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
|+..|++|+ ..+|+|++..+|| +.+++......++.++..+++.+++||+||||++||+||++|+.
T Consensus 648 A~~~i~~f~~~~~~n~Yie~~k~~-l~~~~~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~ 715 (1052)
T PRK14900 648 AANAVYAFVWHELCDWYIELAKEA-LASEDPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRA 715 (1052)
T ss_pred HHHHHHHHHHHhhhHHHHHhccHh-hccCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhcc
Confidence 999999997 5899999998886 44444445556788899999999999999999999999999973
No 14
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-83 Score=742.37 Aligned_cols=505 Identities=21% Similarity=0.262 Sum_probs=416.7
Q ss_pred ccccCCCCCCC--CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc-C
Q 006917 11 ERNHRVAKLPV--PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE-N 87 (625)
Q Consensus 11 ~~~~~~~~~p~--~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-g 87 (625)
.|.+...|.+. .++++|+|++|||||||.|||||+++. +.+|+++||+|++|++|++++|||+||+||+.+|++. |
T Consensus 22 ~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~-~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g 100 (800)
T PRK13208 22 IWEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFSY-THTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYG 100 (800)
T ss_pred HHHHCCCcccccccCCCcEEEecCcCCCCCCccHHHHHhH-HHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhC
Confidence 35556666653 346789999999999999999999985 5699999999999999999999999999999999984 8
Q ss_pred CCHH------------HHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCC
Q 006917 88 CTTQ------------QICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTC 153 (625)
Q Consensus 88 ~~~~------------~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~ 153 (625)
++++ ++++++.+.|+++|++||+++| ++++|+++.|.+.++++|.+|+++|+||++.++++||+.|
T Consensus 101 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~ 180 (800)
T PRK13208 101 IRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRC 180 (800)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCC
Confidence 8766 5999999999999999999988 7899999999999999999999999999999999999999
Q ss_pred Cccccccccc------------------------cCCCC--Ccccc----------------------------------
Q 006917 154 KRFLADRLVE------------------------GSCPT--LGCNY---------------------------------- 173 (625)
Q Consensus 154 ~~~l~~~~v~------------------------g~cp~--~~c~~---------------------------------- 173 (625)
+++|++++|+ .|||+ .||.+
T Consensus 181 ~t~Lsd~ev~~~~~~~~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~ 260 (800)
T PRK13208 181 ETAIAQAEVEYREREGKLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPL 260 (800)
T ss_pred CCccchhhhccccccceEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCc
Confidence 9999999763 46774 22221
Q ss_pred -----------CCCCCcccc-----------------------ccC----------------------CCCCCCcc--CC
Q 006917 174 -----------DSARGDQCE-----------------------KCG----------------------KLLNPTEL--KD 195 (625)
Q Consensus 174 -----------~~~~g~~ce-----------------------~cg----------------------~~~~~~~l--~~ 195 (625)
...+|+.|| +|| ..+...++ ..
T Consensus 261 V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~ 340 (800)
T PRK13208 261 VDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNV 340 (800)
T ss_pred cCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccC
Confidence 012344444 232 22222222 35
Q ss_pred CccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCC--
Q 006917 196 PRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKF-- 273 (625)
Q Consensus 196 ~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~-- 273 (625)
|+|+|||++++.+.++||||+++++++.+++++++..+ .|++.++++.+||++..+|||||||+.||+|||.|.+
T Consensus 341 p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~~~~~---~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~ 417 (800)
T PRK13208 341 KFCERCDTPLEILVTRQWFIKVLDLKEELLERGKEINW---YPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKD 417 (800)
T ss_pred CccCCCCCEEEEeccceeeEeCHHHHHHHHHhhcCcEE---ECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCC
Confidence 99999999999999999999999999999999987654 5777888899999864449999999999999996321
Q ss_pred ------------------------------------CCceeeeeccccchHHHhccCCC---hhhHhhcCCCCCcceEEE
Q 006917 274 ------------------------------------KDKVFYVWFDAPIGYISITSCYT---PDWEEWWKNPENVALYQF 314 (625)
Q Consensus 274 ------------------------------------~~~viyvWfDa~~~yi~~~~~~~---~~~~~~w~~p~d~~~i~~ 314 (625)
+.+|+||||||.+.+++.. +|+ .+|++||| .| +++
T Consensus 418 ~g~~~~~~~~~l~~~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~-~~~~~~~~~~~~~P--~d---~~~ 491 (800)
T PRK13208 418 CGHPILPDEEDLPVDPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVT-GWERDEDLFEKVFP--MD---LRP 491 (800)
T ss_pred CCCeecCchhhhccCchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHh-CCCCChhhhhhcCC--ce---EEE
Confidence 2379999999999888654 453 35788885 57 999
Q ss_pred EeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCC
Q 006917 315 MGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSD 393 (625)
Q Consensus 315 ~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d 393 (625)
.|+||++||...+.++..++... .|++++++||+++ .+|+|||||+||+|+|.++++ .||+|++|||++ .+++++|
T Consensus 492 ~G~Di~~~w~~~~l~~~~~~~~~-~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~-~yg~D~lR~~l~-~~~~~~d 568 (800)
T PRK13208 492 QGHDIIRTWLFYTILRAYLLTGK-LPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLE-KYGADAVRYWAA-SARLGSD 568 (800)
T ss_pred eecchhhhHHHHHHHHHHHhcCC-CCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHH-HcCccHHHHHHh-cCCCCCC
Confidence 99999999988777554444222 3569999999997 699999999999999999998 799999999999 6889999
Q ss_pred CCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 006917 394 TLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQ 473 (625)
Q Consensus 394 ~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~ 473 (625)
++||++.+.. +++++++++|+++++.. +.+ ....+.. ......|+|+++.++.+++.+.++|++|+|+.
T Consensus 569 ~~fs~~~~~~--~~~~l~kl~N~~r~~~~-~~~------~~~~~~~--~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ 637 (800)
T PRK13208 569 TPFDEKQVKI--GRRLLTKLWNASRFVLH-FSA------DPEPDKA--EVLEPLDRWILAKLAKVVEKATEALENYDFAK 637 (800)
T ss_pred ceecHHHHHH--HHHHHHHHHHHHHHHHh-ccc------ccccCcc--ccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999865 58999999999776653 221 0111111 12356799999999999999999999999999
Q ss_pred HHHHHHHHHH--HHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcC
Q 006917 474 GLRIGMSISS--EGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLN 539 (625)
Q Consensus 474 a~~~i~~l~~--~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg 539 (625)
|+..|++|+. .+|.|++..+||....+....+..++.++.++++.+++||+||||++||+||++|+
T Consensus 638 A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~ 705 (800)
T PRK13208 638 ALEEIESFFWHVFCDDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY 705 (800)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCC
Confidence 9999999985 59999999999865433223355788899999999999999999999999999998
No 15
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.9e-82 Score=734.29 Aligned_cols=504 Identities=19% Similarity=0.241 Sum_probs=410.5
Q ss_pred ccccCCCCCCCC-CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHH----
Q 006917 11 ERNHRVAKLPVP-GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAME---- 85 (625)
Q Consensus 11 ~~~~~~~~~p~~-~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~---- 85 (625)
.|.+...|.+.. .+++|+|++|||||||.|||||+++.++ +|+++||+||+|++|++++|||+||++++.+.++
T Consensus 21 ~W~~~~~f~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~-~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~ 99 (874)
T PRK05729 21 KWEEKGYFKPDDNSKKPFSIVIPPPNVTGSLHMGHALNNTL-QDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAA 99 (874)
T ss_pred HHHHCCCcccCcCCCCCEEEecCCCCCCCcchHHHHHHHHH-HHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHh
Confidence 355566666642 3456999999999999999999999655 9999999999999999999999999988776644
Q ss_pred cCCCHHH------------HHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeC
Q 006917 86 ENCTTQQ------------ICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCD 151 (625)
Q Consensus 86 ~g~~~~~------------~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~ 151 (625)
.|+++.+ +++++...++++|++||+++| +.+.|+++.|...|+++|.+|+++|+||++.++++|||
T Consensus 100 ~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp 179 (874)
T PRK05729 100 EGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDP 179 (874)
T ss_pred cCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCC
Confidence 3666554 589999999999999999988 34679999999999999999999999999999999999
Q ss_pred CCCcccccccccc------------------------------------------------------CCCC---------
Q 006917 152 TCKRFLADRLVEG------------------------------------------------------SCPT--------- 168 (625)
Q Consensus 152 ~~~~~l~~~~v~g------------------------------------------------------~cp~--------- 168 (625)
.|+++|+|.+|+. .||.
T Consensus 180 ~~~talsd~EV~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~ 259 (874)
T PRK05729 180 KLQTALSDLEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPLVGREIPIIA 259 (874)
T ss_pred CCCCcchhhhcccccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCCCCCeeeEec
Confidence 9999999999861 1332
Q ss_pred ---------Ccccc-----------------------CCCCCccccccCCCC------------------------CCCc
Q 006917 169 ---------LGCNY-----------------------DSARGDQCEKCGKLL------------------------NPTE 192 (625)
Q Consensus 169 ---------~~c~~-----------------------~~~~g~~ce~cg~~~------------------------~~~~ 192 (625)
.||-. -+..|..++.||.+- .+.+
T Consensus 260 ~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~ 339 (874)
T PRK05729 260 DEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHT 339 (874)
T ss_pred CccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEee
Confidence 01100 023466666666531 1113
Q ss_pred cCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCC
Q 006917 193 LKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEK 272 (625)
Q Consensus 193 l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~ 272 (625)
...|+|+|||++++.+.++||||+++++++++.+++++... ..+|++.++.+.+||++ ++|||||||+.||+|||.|.
T Consensus 340 ~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i-~~~P~~~~~~~~~wl~~-l~DWcISRq~~WG~pIP~~~ 417 (874)
T PRK05729 340 HSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEI-KFVPERWEKTYFHWMEN-IQDWCISRQLWWGHRIPAWY 417 (874)
T ss_pred ccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCc-EEEChHHHHHHHHHHhc-CccceeeeecccCCcccEEE
Confidence 45799999999999999999999999999999999975432 24688888899999975 99999999999999999653
Q ss_pred C----------------------CCceeeeeccccchHHHhccCCC---hhhHhhcCCCCCcceEEEEeecccchhHhHH
Q 006917 273 F----------------------KDKVFYVWFDAPIGYISITSCYT---PDWEEWWKNPENVALYQFMGKDNAPFHTVMF 327 (625)
Q Consensus 273 ~----------------------~~~viyvWfDa~~~yi~~~~~~~---~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~ 327 (625)
+ +.+|++|||||.+.|++.+ +|+ .+|++||| .| +|++|+||++| |
T Consensus 418 ~~~~~~~v~~~~~~~~~~~~~~~~~DvlDtWfsS~l~~~~~l-gwp~~~~~~~~~~P--~d---~~~~G~Dii~~----W 487 (874)
T PRK05729 418 DEDGEVYVGREEPEAREKALLTQDEDVLDTWFSSALWPFSTL-GWPEKTEDLKRFYP--TS---VLVTGFDIIFF----W 487 (874)
T ss_pred eCCCcEEeCCcccccccccCeEeCCceecceecCCccHHHHh-CCCCCcHHHHhcCC--cc---cccccccccch----H
Confidence 2 2467888999999998875 664 35888995 56 99999999998 5
Q ss_pred HHHhhcCCCC---ccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHH
Q 006917 328 PSTLLGTEEN---WTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQA 403 (625)
Q Consensus 328 pa~l~a~~~~---~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~ 403 (625)
++++++.+.. ..|++.+++||+|+ .+|+|||||+||+|+|.++++ .||+|+|||||++.++.++|++|+++.+..
T Consensus 488 ~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~-~yGaDalR~~ll~~~~~~~Di~fs~~~l~~ 566 (874)
T PRK05729 488 VARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLID-KYGADALRFTLAALASPGRDIRFDEERVEG 566 (874)
T ss_pred HHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHH-HhChHHHHHHHHhCCCCCCCceeCHHHHHH
Confidence 5555443321 12559999999998 799999999999999999998 799999999999988899999999999976
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-
Q 006917 404 KLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSIS- 482 (625)
Q Consensus 404 ~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~- 482 (625)
. .+++++++|+.+.+...+.+ ...+..+.. ......|+|+++.++.+++.+.++|++|+|+.|++.|++|+
T Consensus 567 ~--~~~~nkl~N~~Rf~~~~~~~----~~~~~~~~~--~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~ 638 (874)
T PRK05729 567 Y--RNFANKLWNASRFVLMNLEG----ADVGELPDP--EELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIW 638 (874)
T ss_pred H--HHHHHHHHHHHHHHHHhccc----CCccccccc--ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5 57999999965544333232 122222211 12456799999999999999999999999999999999998
Q ss_pred -HHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 483 -SEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 483 -~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
..+|+|++..+||. . + .. ...++.++..+++.+++||+||||++||+||++|+.
T Consensus 639 ~~~~~~Yle~~k~~l-~-~-~~-~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~ 693 (874)
T PRK05729 639 NEFCDWYLELAKPVL-Q-E-AA-KRATRATLAYVLEQILRLLHPFMPFITEELWQKLAP 693 (874)
T ss_pred HHHHHHHHHHHHHHh-h-h-hH-HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhccc
Confidence 57999999999994 3 2 22 456788999999999999999999999999999974
No 16
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=4e-81 Score=725.74 Aligned_cols=510 Identities=19% Similarity=0.205 Sum_probs=413.2
Q ss_pred ccccCCCCCCC--CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc--
Q 006917 11 ERNHRVAKLPV--PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE-- 86 (625)
Q Consensus 11 ~~~~~~~~~p~--~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-- 86 (625)
.|.+...|.+. .++++|+|+.|||||||.|||||+++.++ +|+++||+||+||+|+|++|||+||++++.++++.
T Consensus 72 ~W~~~~~f~~~~~~~~~~f~i~~pPP~~tG~lHiGHa~~~~~-~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~ 150 (958)
T PLN02943 72 WWESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTL-EDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLA 150 (958)
T ss_pred HHHHCCCcccCcccCCCCEEEecCCCCCCCchhHHHHHHHHH-HHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHH
Confidence 45556667664 35677999999999999999999999655 99999999999999999999999999999876553
Q ss_pred --CCC------------HHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeee
Q 006917 87 --NCT------------TQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYC 150 (625)
Q Consensus 87 --g~~------------~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~ 150 (625)
|++ |.++++++.+.++++|++||+++| +.+.|+++.|.+.++++|.+|+++|+||++.++++||
T Consensus 151 ~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wc 230 (958)
T PLN02943 151 SEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWS 230 (958)
T ss_pred HcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccC
Confidence 553 445678899999999999999887 5678999999999999999999999999999999999
Q ss_pred CCCCcccccccccc--------------------------CCCC--Ccc--------------------------c----
Q 006917 151 DTCKRFLADRLVEG--------------------------SCPT--LGC--------------------------N---- 172 (625)
Q Consensus 151 ~~~~~~l~~~~v~g--------------------------~cp~--~~c--------------------------~---- 172 (625)
|.|++.|++.+|+. |.|+ .|| +
T Consensus 231 p~~~Tals~~Evey~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ip 310 (958)
T PLN02943 231 PNLQTAVSDLEVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVP 310 (958)
T ss_pred CCCCCCcCHHHhhcccccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeee
Confidence 99999999998862 1221 000 0
Q ss_pred ------------c---------------------------CCCCCccccccCCC--------------------CCCCcc
Q 006917 173 ------------Y---------------------------DSARGDQCEKCGKL--------------------LNPTEL 193 (625)
Q Consensus 173 ------------~---------------------------~~~~g~~ce~cg~~--------------------~~~~~l 193 (625)
. -+..|...+.+|.+ .++.+.
T Consensus 311 ii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~ 390 (958)
T PLN02943 311 IIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTL 390 (958)
T ss_pred EEecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeec
Confidence 0 01223333344433 122344
Q ss_pred CCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCC
Q 006917 194 KDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKF 273 (625)
Q Consensus 194 ~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~ 273 (625)
..|+|+|||++++.+.++|||++++.+++.+++++++... ..+|....+.+.+|++ +++|||||||+.||+|||.|.+
T Consensus 391 ~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i-~~~P~~~~~~~~~wl~-~l~DWcISRQr~WG~pIP~w~~ 468 (958)
T PLN02943 391 RVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGEL-TIIPERFEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYI 468 (958)
T ss_pred CCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCc-EEEChHHHHHHHHHHh-cCccceEEEecCCCCccCceec
Confidence 6799999999999999999999999999999999975432 2357777888999997 7999999999999999998542
Q ss_pred ----------------------------------CCceeeeeccccchHHHhccCCC----hhhHhhcCCCCCcceEEEE
Q 006917 274 ----------------------------------KDKVFYVWFDAPIGYISITSCYT----PDWEEWWKNPENVALYQFM 315 (625)
Q Consensus 274 ----------------------------------~~~viyvWfDa~~~yi~~~~~~~----~~~~~~w~~p~d~~~i~~~ 315 (625)
+.+|+||||||+++|++.+ +|+ ++|+.||| .| +++.
T Consensus 469 ~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~l-gwp~~~~~~~~~~yP--~d---l~~~ 542 (958)
T PLN02943 469 VGKDCEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTL-GWPDVSAEDFKKFYP--TT---VLET 542 (958)
T ss_pred cccCCCceEEecCcHHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhc-CCCccChHHHhccCC--Ce---EEEE
Confidence 3599999999999998876 464 36888895 56 8999
Q ss_pred eecccchhHhHHHHHhhcCCCC---ccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCC
Q 006917 316 GKDNAPFHTVMFPSTLLGTEEN---WTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEV 391 (625)
Q Consensus 316 GkD~~~fH~~~~pa~l~a~~~~---~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~ 391 (625)
|+||++| |++.++++|.. ..|++++++||+++ .+|+|||||+||+|+|.++++ .||+|++|||+++ .+++
T Consensus 543 G~Dii~f----W~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~-~ygaDalR~~l~~-~~~~ 616 (958)
T PLN02943 543 GHDILFF----WVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIK-EFGTDALRFTLAL-GTAG 616 (958)
T ss_pred eehHHHH----HHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHH-hcCChHHHHHHHh-CCCC
Confidence 9999976 77775555542 12568999999996 799999999999999999998 7999999999998 5568
Q ss_pred CCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCC---------CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 006917 392 SDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPG---------RGYGSIIPDSPKADLHPSTKMLAEKISNHIDQY 462 (625)
Q Consensus 392 ~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~---------~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v 462 (625)
+|++|+++.+.. +++++++|+|+.+++...+..... ..+++..+ .......|+|+++.++.+++.+
T Consensus 617 ~d~~fs~~~l~~--~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~D~wilskl~~~i~~v 691 (958)
T PLN02943 617 QDLNLSTERLTS--NKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEES---LLSLPLPECWVVSKLHELIDSV 691 (958)
T ss_pred CCccccHHHHHH--HHHHHHHHHHHHHHHHhccccccccccccccccccCCcccc---ccccCHHHHHHHHHHHHHHHHH
Confidence 999999999986 589999999998887664421000 01111111 0123567999999999999999
Q ss_pred HHHHHhccHHHHHHHHHHHH--HHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 463 IEAMEKVKLKQGLRIGMSIS--SEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 463 ~~a~~~~~~~~a~~~i~~l~--~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
.++|++|+|+.|++.+++|+ ..+|+|++..+||...+++......+..++..+++.+++||+|||||+||+||++|+.
T Consensus 692 ~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~ 771 (958)
T PLN02943 692 TTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPY 771 (958)
T ss_pred HHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCchHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCC
Confidence 99999999999999999995 7899999999997543333334556788888999999999999999999999999974
No 17
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=1.4e-79 Score=714.59 Aligned_cols=505 Identities=20% Similarity=0.244 Sum_probs=410.8
Q ss_pred ccccCCCCCC----CCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc
Q 006917 11 ERNHRVAKLP----VPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE 86 (625)
Q Consensus 11 ~~~~~~~~~p----~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~ 86 (625)
.|.+...|.+ ..++++|+|+.|||||||.|||||+++.++ +|+++||+||+|++|++++|||+||+||+.+|++.
T Consensus 18 ~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~-~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~ 96 (861)
T TIGR00392 18 FWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKIL-KDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKK 96 (861)
T ss_pred HHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHH-HHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHH
Confidence 3455555553 235677999999999999999999999655 99999999999999999999999999999999876
Q ss_pred -CCC----------------HHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeee
Q 006917 87 -NCT----------------TQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQ 147 (625)
Q Consensus 87 -g~~----------------~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~ 147 (625)
|+. |+++++++.+.++++|++||++.| +.+.|+++.|.+.++++|.+|+++|+||++..++
T Consensus 97 l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v 176 (861)
T TIGR00392 97 LGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPV 176 (861)
T ss_pred hCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecceee
Confidence 553 348899999999999999999665 7789999999999999999999999999999999
Q ss_pred eeeCCCCccccccccccC-------CC------------------------------C--Ccccc-----CCC-------
Q 006917 148 LYCDTCKRFLADRLVEGS-------CP------------------------------T--LGCNY-----DSA------- 176 (625)
Q Consensus 148 ~y~~~~~~~l~~~~v~g~-------cp------------------------------~--~~c~~-----~~~------- 176 (625)
+||+.|++.|++.+|+.. +| + +||.+ +..
T Consensus 177 ~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~ 256 (861)
T TIGR00392 177 YWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDN 256 (861)
T ss_pred ecCCCcCCcccHHHHhcccccccccCceEEEEEEecCCcccccccccceEEEEECCcccccCCeeeeeCCCCceEEEEcC
Confidence 999999999999988521 11 1 00000 000
Q ss_pred --------------------------------------------CCccc-------------------------------
Q 006917 177 --------------------------------------------RGDQC------------------------------- 181 (625)
Q Consensus 177 --------------------------------------------~g~~c------------------------------- 181 (625)
.+...
T Consensus 257 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~ 336 (861)
T TIGR00392 257 TKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHG 336 (861)
T ss_pred CCCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCC
Confidence 00000
Q ss_pred ------------------cccCCCCCC-----------C---------------------------ccCCCccccCCCcc
Q 006917 182 ------------------EKCGKLLNP-----------T---------------------------ELKDPRCKVCQATP 205 (625)
Q Consensus 182 ------------------e~cg~~~~~-----------~---------------------------~l~~~~~~~~g~~~ 205 (625)
+..|++.+. . ...+|+|||||+++
T Consensus 337 ~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v 416 (861)
T TIGR00392 337 EEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPV 416 (861)
T ss_pred HHHHHHHHHcCCCcccccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEE
Confidence 001111000 0 01358999999999
Q ss_pred EEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCC------------
Q 006917 206 KIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKF------------ 273 (625)
Q Consensus 206 ~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~------------ 273 (625)
+++.++|||++++++++.++++++++.+ +|...++++.+||+ +++|||||||+.||+|||.|.+
T Consensus 417 ~~~~~~QWFi~~~~~k~~~l~~~~~i~~---~P~~~~~~~~~~l~-~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~ 492 (861)
T TIGR00392 417 IYRATEQWFIKTKDIKDQMLEQIKKVNW---VPEWGEGRFGNWLE-NRPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSI 492 (861)
T ss_pred EEecCccccEEcHHHHHHHHHHhCCcEE---ECchHHHHHHHHHh-CCCcceeeccccCCCeeeEEEECCCCCCcCchhH
Confidence 9999999999999999999999987765 46677788999998 5899999999999999998432
Q ss_pred ---------------------------------------CCceeeeeccccchHHHhccCCC---hhhHhhcCCCCCcce
Q 006917 274 ---------------------------------------KDKVFYVWFDAPIGYISITSCYT---PDWEEWWKNPENVAL 311 (625)
Q Consensus 274 ---------------------------------------~~~viyvWfDa~~~yi~~~~~~~---~~~~~~w~~p~d~~~ 311 (625)
+.+|+||||||+++|++... ++ .+|+.||| .|
T Consensus 493 ~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~-~~~~~~~f~~~~P--~d--- 566 (861)
T TIGR00392 493 EELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIH-YPFENEKFKEVFP--AD--- 566 (861)
T ss_pred HHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcC-CCCCcchhhccCC--ce---
Confidence 24599999999999998763 54 35888895 56
Q ss_pred EEEEeecccc--hhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHhcC
Q 006917 312 YQFMGKDNAP--FHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNR 388 (625)
Q Consensus 312 i~~~GkD~~~--fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~ 388 (625)
+|++|+||++ ||+.+|+++++. +. .||+.+++||||+ .+|+|||||+||+|+|.++++ .||+|+||||+++.
T Consensus 567 ~~i~G~Di~r~Wf~~~~~~~~~~~-~~--~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~-~yGaDalR~~ll~~- 641 (861)
T TIGR00392 567 FILEGSDQTRGWFYSSLAIGTALF-GQ--APYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVIN-KYGADILRLYVASS- 641 (861)
T ss_pred EEEEecchhccHHHHHHHHHHHHc-CC--CChHhhEecceEECCCCCCcCCCCCCCCCHHHHHH-HcCHHHHHHHHHhC-
Confidence 9999999997 999999997763 43 4889999999998 599999999999999999998 79999999999997
Q ss_pred CCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHH--HhhhCCCCCCCCC--CCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 006917 389 PEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVL--SFIAKPPGRGYGS--IIPDSPKADLHPSTKMLAEKISNHIDQYIE 464 (625)
Q Consensus 389 ~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~--~~~~k~~~~~~~~--~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~ 464 (625)
+.++|++|+++.+.. .++++.+.++|+++++. +.+.+ ++. ..+.. ......|+++++.++.+++.+.+
T Consensus 642 ~~~~D~~fs~~~l~~-~~~~~~n~l~N~~~~~~~~~~l~~-----~~~~~~~~~~--~~l~~~d~~ll~~l~~~~~~v~~ 713 (861)
T TIGR00392 642 DPWEDLRFSDEILKQ-VVEKYRKIRWNTYRFLLTYANLDK-----FDPLFNSVAV--EKFPEEDRWILSRLNSLVEEVNE 713 (861)
T ss_pred CCCCCceECHHHHHH-HHHHHHHHHHHHHHHHHHHhcccc-----CCcccccccc--ccCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999876 45678999999998887 55443 221 11110 12356789999999999999999
Q ss_pred HHHhccHHHHHHHHHHHHHH--HhHHHHhccc--cccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 465 AMEKVKLKQGLRIGMSISSE--GNAYLQESQF--WKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 465 a~~~~~~~~a~~~i~~l~~~--~N~y~~~~~p--w~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
+|++|+++.|++.+++|+.. +|.|++..+| |...+++..+ ++..++..+++.+++||+||||++||+||++|+.
T Consensus 714 ~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~--~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~ 791 (861)
T TIGR00392 714 ALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKR--AAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPG 791 (861)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhccc
Confidence 99999999999999999865 9999998866 8776433222 5667888899999999999999999999999985
Q ss_pred C
Q 006917 541 P 541 (625)
Q Consensus 541 ~ 541 (625)
.
T Consensus 792 ~ 792 (861)
T TIGR00392 792 G 792 (861)
T ss_pred c
Confidence 3
No 18
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-80 Score=678.55 Aligned_cols=509 Identities=20% Similarity=0.278 Sum_probs=419.1
Q ss_pred cccccCCCCCCCCCC--CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc-
Q 006917 10 GERNHRVAKLPVPGK--RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE- 86 (625)
Q Consensus 10 ~~~~~~~~~~p~~~~--~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~- 86 (625)
..|.....|.|..+. ++|.|.+|||||+|.||||||.+.++ .|+++||.||+||+|+|++|+|++|.+++...+++
T Consensus 16 ~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl-~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l 94 (877)
T COG0525 16 KKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTL-QDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQL 94 (877)
T ss_pred HHHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHH-HHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHH
Confidence 356777888887543 67999999999999999999999776 99999999999999999999999999999888764
Q ss_pred ---CCC------------HHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeee
Q 006917 87 ---NCT------------TQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLY 149 (625)
Q Consensus 87 ---g~~------------~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y 149 (625)
|++ +.++.+++...++++|++||+++| +.+.|+|+.+.+.|++.|.+|+++|+||++++.+.|
T Consensus 95 ~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNW 174 (877)
T COG0525 95 AAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNW 174 (877)
T ss_pred HHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccC
Confidence 443 456778899999999999999988 456699999999999999999999999999999999
Q ss_pred eCCCCcccccccccc-------------------------CCCC--Ccc-------------------------c-----
Q 006917 150 CDTCKRFLADRLVEG-------------------------SCPT--LGC-------------------------N----- 172 (625)
Q Consensus 150 ~~~~~~~l~~~~v~g-------------------------~cp~--~~c-------------------------~----- 172 (625)
||.|+|.++|.+|+. |-|. .|| +
T Consensus 175 cP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpI 254 (877)
T COG0525 175 CPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPI 254 (877)
T ss_pred CCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeee
Confidence 999999999998862 1221 011 1
Q ss_pred -------------------cC-------------------CCCCccccccC-CC----------------------C--C
Q 006917 173 -------------------YD-------------------SARGDQCEKCG-KL----------------------L--N 189 (625)
Q Consensus 173 -------------------~~-------------------~~~g~~ce~cg-~~----------------------~--~ 189 (625)
+. +..|...++|+ .+ + .
T Consensus 255 iaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e 334 (877)
T COG0525 255 IADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIE 334 (877)
T ss_pred ecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeee
Confidence 00 12344443443 22 0 1
Q ss_pred CCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccC
Q 006917 190 PTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVP 269 (625)
Q Consensus 190 ~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP 269 (625)
+.....|+|+|||++++...++|||++...+++.+.+..++... ...|++..+...+|+++ ++|||||||+.||.+||
T Consensus 335 ~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i-~f~P~~~~~~~~~W~~~-i~DWcISRQlwwGh~IP 412 (877)
T COG0525 335 PHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKI-KFVPERMEKRYEDWMEN-IRDWCISRQLWWGHRIP 412 (877)
T ss_pred eccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCc-eEecHHHHHHHHHHHhh-CcCceeeeeeecCcccc
Confidence 12335799999999999999999999999999999999984331 13578888899999975 77999999999999999
Q ss_pred CCCC-----------------------------CCceeeeeccccchHHHhccCCCh---hhHhhcCCCCCcceEEEEee
Q 006917 270 HEKF-----------------------------KDKVFYVWFDAPIGYISITSCYTP---DWEEWWKNPENVALYQFMGK 317 (625)
Q Consensus 270 ~~~~-----------------------------~~~viyvWfDa~~~yi~~~~~~~~---~~~~~w~~p~d~~~i~~~Gk 317 (625)
.|.+ +.+|+++||+|.+..++.+ +|++ ++++|+| .+ +.+.|.
T Consensus 413 vWy~~~~g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstl-gWp~~t~~l~~fyP--t~---llvtG~ 486 (877)
T COG0525 413 VWYCKECGNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTL-GWPEETPDLKKFYP--TD---LLVTGH 486 (877)
T ss_pred eEEecCCCcEEeCCccccchhhhccCchhcccCCcchhhhhhhccccccccc-CCCCcchHHHhcCC--Cc---cccccc
Confidence 9843 3479999999999988876 7775 6788775 35 889999
Q ss_pred cccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCc
Q 006917 318 DNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLF 396 (625)
Q Consensus 318 D~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~f 396 (625)
||+||+..+...+.+.+... .|++.+++||++. .+|+|||||+||||+|.++++ .||+|+|||+|++.+..++|++|
T Consensus 487 DIIffWvarmi~~~~~~~~~-~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~-~yGaDAlRf~la~~~~~G~Di~~ 564 (877)
T COG0525 487 DIIFFWVARMIMRGLHLTGE-VPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVID-KYGADALRFTLASLASPGRDINF 564 (877)
T ss_pred hhhHHHHHHHHHHHHHhcCC-CCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHH-HhChHHHHHHHHhccCCCcccCc
Confidence 99999887655444444333 5889999999986 899999999999999999998 89999999999998789999999
Q ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 006917 397 TWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLR 476 (625)
Q Consensus 397 s~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~ 476 (625)
+++.+... .+++++++|+.+.++..+.+. .. .+... ...+..|+|+++.++++++.+.++|++|+|..|.+
T Consensus 565 ~~~~~~~~--rnF~nKlWNa~Rfv~~~~~~~-----~~-~~~~~-~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~ 635 (877)
T COG0525 565 DEKRVEGY--RNFLNKLWNATRFVLMNLDDL-----GP-DDLDL-LALSLADRWILSRLNETVKEVTEALDNYRFDEAAR 635 (877)
T ss_pred CHHHHHHH--HHHHHHHHhHHHHHHhccccc-----Cc-ccccc-cccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999875 799999999988877655431 11 11000 12357899999999999999999999999999999
Q ss_pred HHHHHH--HHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 477 IGMSIS--SEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 477 ~i~~l~--~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
.|.+|+ ..+++|++..+|-... + ++...+..+++..++..+.+||+||||+++|+||+.|..
T Consensus 636 ~ly~F~W~~fcD~YlEl~K~~l~~-~-~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~ 699 (877)
T COG0525 636 ALYEFIWNDFCDWYLELAKPRLYG-G-EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPG 699 (877)
T ss_pred HHHHHhHHHHHHHHHHHhhhhhcC-c-HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCC
Confidence 999998 3599999999874322 2 444457788999999999999999999999999999976
No 19
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-79 Score=717.90 Aligned_cols=509 Identities=20% Similarity=0.277 Sum_probs=402.0
Q ss_pred ccccCCCCCCC----CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc
Q 006917 11 ERNHRVAKLPV----PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE 86 (625)
Q Consensus 11 ~~~~~~~~~p~----~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~ 86 (625)
.|++...|.+. .++++|+|+.|||||||.|||||+++.++ +|+++||+||+||+|.+++|||+||+||+..+++.
T Consensus 23 ~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~-kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~ 101 (975)
T PRK06039 23 FWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTI-KDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKE 101 (975)
T ss_pred HHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHH-HHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHH
Confidence 45555555532 35678999999999999999999999765 99999999999999999999999999999999875
Q ss_pred -CCC----------------HHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeee
Q 006917 87 -NCT----------------TQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQ 147 (625)
Q Consensus 87 -g~~----------------~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~ 147 (625)
|++ |.++++++.+.+++++++||++.| +.+.|+++.|.+.++++|.+|+++|+||++..++
T Consensus 102 l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v 181 (975)
T PRK06039 102 LGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVV 181 (975)
T ss_pred hCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceee
Confidence 654 789999999999999999997665 6788999999999999999999999999999999
Q ss_pred eeeCCCCcccccccccc----------------------------CCCC--Cccc-----cCC-----------------
Q 006917 148 LYCDTCKRFLADRLVEG----------------------------SCPT--LGCN-----YDS----------------- 175 (625)
Q Consensus 148 ~y~~~~~~~l~~~~v~g----------------------------~cp~--~~c~-----~~~----------------- 175 (625)
+|||.|+|.|++.+|++ |.|+ +||. -++
T Consensus 182 ~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~ 261 (975)
T PRK06039 182 PYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEA 261 (975)
T ss_pred eecCCCCCCccHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHH
Confidence 99999999999998862 1121 0110 000
Q ss_pred --------------------------------------------------CCCcccc-----------------------
Q 006917 176 --------------------------------------------------ARGDQCE----------------------- 182 (625)
Q Consensus 176 --------------------------------------------------~~g~~ce----------------------- 182 (625)
..|..|-
T Consensus 262 ~~~~~~~~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~ 341 (975)
T PRK06039 262 LLEKVLKEDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVC 341 (975)
T ss_pred HHHHHhhcccEEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccc
Confidence 0000000
Q ss_pred ---ccCCCCCC-------------------------------CccCCCccccCCCccEEEeccceeeeccchHHHHHHHH
Q 006917 183 ---KCGKLLNP-------------------------------TELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYI 228 (625)
Q Consensus 183 ---~cg~~~~~-------------------------------~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~ 228 (625)
..|++.+. .....|+|||||++++++.++|||++++++++++++++
T Consensus 342 ~id~~G~~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~ 421 (975)
T PRK06039 342 PVDDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELN 421 (975)
T ss_pred eeCCCceEcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhh
Confidence 01111100 01246999999999999999999999999999999999
Q ss_pred HhCCCCCCCChhHHH-HHHHHHhcCCCCcccccccCCCcccCCCCC----------------------------------
Q 006917 229 NKMSVSGSWSQNAIQ-GTYAWLKDGLKPRCITRDLKWGVPVPHEKF---------------------------------- 273 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~-~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~---------------------------------- 273 (625)
++..+. |+..++ ++.+||+ +++|||||||+.||+|||.|.+
T Consensus 422 ~~i~~~---P~~~~~~~~~~wl~-~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d 497 (975)
T PRK06039 422 QKINWY---PEHIKDGRFGKWLE-NARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVD 497 (975)
T ss_pred CCeEEE---CcccchhhHHHHHh-cCccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccc
Confidence 886654 444555 7789997 5999999999999999997421
Q ss_pred --------------CCceeeeeccccchHHHhccCCC----hhhHhhcCCCCCcceEEEEeecccch--hHhHHHHHhhc
Q 006917 274 --------------KDKVFYVWFDAPIGYISITSCYT----PDWEEWWKNPENVALYQFMGKDNAPF--HTVMFPSTLLG 333 (625)
Q Consensus 274 --------------~~~viyvWfDa~~~yi~~~~~~~----~~~~~~w~~p~d~~~i~~~GkD~~~f--H~~~~pa~l~a 333 (625)
+.+|+||||||++.|++.. +|+ +.|+.||| .| +++.|+||++| |..+..+++.
T Consensus 498 ~~~~~~~~~~~~~r~~dVlDvWFdSg~~p~a~~-~~p~~~~~~f~~~~P--ad---~~~~G~Di~r~Wf~~l~~~~~~~- 570 (975)
T PRK06039 498 EVTLPCPDGGTMRRVPDVIDVWFDSGSMPYAQL-HYPFENKEWFEKHFP--AD---FIVEGIDQTRGWFYTLLALSTAL- 570 (975)
T ss_pred cccccCCCCcceEeccccccceeecCCccHHHh-CCcccChhhhhccCC--ce---EEEechhhHhhHHHHHHHHHHHh-
Confidence 1289999999999998875 453 24788895 56 99999999975 3333222211
Q ss_pred CCCCccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHH
Q 006917 334 TEENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNN 412 (625)
Q Consensus 334 ~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~ 412 (625)
.|. +|++++++|||++ .+|+|||||+||+|+|.++++ .||+|++||||++.++.++|++||++.+.+..|+.+ ++
T Consensus 571 ~~~--~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~-~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l-~k 646 (975)
T PRK06039 571 FDR--PPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFD-KYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFL-LT 646 (975)
T ss_pred cCC--CcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHH-HhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHH-HH
Confidence 122 4789999999998 599999999999999999998 799999999999988889999999999777665554 99
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HhHHHHh
Q 006917 413 LGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSE-GNAYLQE 491 (625)
Q Consensus 413 l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~-~N~y~~~ 491 (625)
++|+++++.....- . .++..............|+|+++.++.+++.+.++|++|+++.|++.|++|++. +|+|++.
T Consensus 647 l~N~~~f~~~y~~~-~--~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~~~lsn~Yi~~ 723 (975)
T PRK06039 647 LWNVYSFFVLYANL-D--GFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRR 723 (975)
T ss_pred HHHHHHHHHHHhhh-c--cCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887643321 0 111110000012245789999999999999999999999999999999999965 6899987
Q ss_pred c--cccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 492 S--QFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 492 ~--~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
. ++|...+ +.. ..+++.++..+++.+++||+||||++||+||++|+.
T Consensus 724 ~k~r~w~~~~-~~~-~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~ 772 (975)
T PRK06039 724 SRRRFWKEED-DPD-KLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTR 772 (975)
T ss_pred hhhhhccCCC-cHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc
Confidence 6 4587643 222 345678888999999999999999999999999985
No 20
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.7e-79 Score=717.03 Aligned_cols=513 Identities=19% Similarity=0.230 Sum_probs=403.4
Q ss_pred ccccCCCCCCC----CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc
Q 006917 11 ERNHRVAKLPV----PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE 86 (625)
Q Consensus 11 ~~~~~~~~~p~----~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~ 86 (625)
.|.+...|.+. .++++|+++.|||||||.|||||+++.++ +|+++||+||+||+|.+++|||+||+||+..+++.
T Consensus 20 ~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~i-kDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~ 98 (1159)
T PLN02882 20 LWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTI-KDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKK 98 (1159)
T ss_pred HHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHH-HHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHH
Confidence 45555555542 35667999999999999999999999655 99999999999999999999999999999999644
Q ss_pred -CC----------------CHHHHHHHHHHHHHHHHhhcCc--ccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeee
Q 006917 87 -NC----------------TTQQICDKYYAIHKAVYNWFNI--SFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQ 147 (625)
Q Consensus 87 -g~----------------~~~~~~~~~~~~~~~~~~~lgi--~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~ 147 (625)
|+ .|++++.++.+.+++++++||+ ++|+.++|+++.|.+.++++|.+|+++|+||++.+++
T Consensus 99 lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v 178 (1159)
T PLN02882 99 LGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVM 178 (1159)
T ss_pred cCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeE
Confidence 54 3667899999999999999995 5668999999999999999999999999999999999
Q ss_pred eeeCCCCccccccccc------------------c-----------CCCC--Ccc---------cc--------------
Q 006917 148 LYCDTCKRFLADRLVE------------------G-----------SCPT--LGC---------NY-------------- 173 (625)
Q Consensus 148 ~y~~~~~~~l~~~~v~------------------g-----------~cp~--~~c---------~~-------------- 173 (625)
+|||.|+|.|++.+++ + |.|+ ++| .|
T Consensus 179 ~wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~ 258 (1159)
T PLN02882 179 PYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIV 258 (1159)
T ss_pred eecCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEE
Confidence 9999999999976652 0 2232 000 00
Q ss_pred -------------------------------------------------------C-----------------------C
Q 006917 174 -------------------------------------------------------D-----------------------S 175 (625)
Q Consensus 174 -------------------------------------------------------~-----------------------~ 175 (625)
. .
T Consensus 259 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aP 338 (1159)
T PLN02882 259 AESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAP 338 (1159)
T ss_pred hHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecC
Confidence 0 0
Q ss_pred CCCc----cccccCC---------------------------------------------CCCCCcc--CCCccccCCCc
Q 006917 176 ARGD----QCEKCGK---------------------------------------------LLNPTEL--KDPRCKVCQAT 204 (625)
Q Consensus 176 ~~g~----~ce~cg~---------------------------------------------~~~~~~l--~~~~~~~~g~~ 204 (625)
+.|. .|..-|. ++...++ .+|+|||||+|
T Consensus 339 ahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tp 418 (1159)
T PLN02882 339 AFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTP 418 (1159)
T ss_pred CCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCE
Confidence 0000 0000111 1111111 36999999999
Q ss_pred cEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhH-HHHHHHHHhcCCCCcccccccCCCcccCCCCCC---------
Q 006917 205 PKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNA-IQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFK--------- 274 (625)
Q Consensus 205 ~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~--------- 274 (625)
++.+.++|||++++++++++++..++..+. |..+ .+++.+||++ ++||||||||.||+|||.|.++
T Consensus 419 li~~a~~qWFi~~~~~k~~~l~~~~~i~w~---P~~~~~~r~~~wl~~-~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~ 494 (1159)
T PLN02882 419 LIYRAVPSWFVKVEEIKDRLLENNKQTYWV---PDYVKEKRFHNWLEN-ARDWAVSRSRFWGTPLPIWISDDGEEVVVIG 494 (1159)
T ss_pred EEEEecceeEEEcHHHHHHHHHhhCCcEEE---CCcchhhHHHHHHhc-CcccceeeccccCCccceEEeCCCCeEEecC
Confidence 999999999999999999999988877654 4444 3578999976 9999999999999999986210
Q ss_pred ----------------------------------------CceeeeeccccchHHHhccCCC----hhhHhhcCCCCCcc
Q 006917 275 ----------------------------------------DKVFYVWFDAPIGYISITSCYT----PDWEEWWKNPENVA 310 (625)
Q Consensus 275 ----------------------------------------~~viyvWfDa~~~yi~~~~~~~----~~~~~~w~~p~d~~ 310 (625)
.+|+||||||.+...+.. +|+ +.|..+|| +|
T Consensus 495 s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~-~~p~e~~~~f~~~~P--aD-- 569 (1159)
T PLN02882 495 SIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYI-HYPFENKELFEKNFP--AD-- 569 (1159)
T ss_pred cHHHHHHHhCCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHc-CCcccChhHhhccCC--ce--
Confidence 178999999998877654 554 24667774 67
Q ss_pred eEEEEeecccchhHhHHHHHhhcCC---CCccCcceEEeeeeeec-CCccccccCCcccCchhhhhcCCCchhHHHHHHh
Q 006917 311 LYQFMGKDNAPFHTVMFPSTLLGTE---ENWTLMKTISVTEYLNY-EAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 311 ~i~~~GkD~~~fH~~~~pa~l~a~~---~~~~~~~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+++.|+||+++ |++.++.++ .+.+||+++++|||++- +|+|||||+||+|+|.++++ +||+|+|||||++
T Consensus 570 -~i~eG~Dq~Rg----Wf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~-~YGADaLR~~Ll~ 643 (1159)
T PLN02882 570 -FVAEGLDQTRG----WFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVID-KYGADALRLYLIN 643 (1159)
T ss_pred -EEEEecchhhh----HHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHH-HhCcHHHHHHHHh
Confidence 99999999986 444443332 13468999999999986 89999999999999999998 7999999999997
Q ss_pred cCC-CCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCC---CCCcHHHHHHHHHHHHHHHHH
Q 006917 387 NRP-EVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPK---ADLHPSTKMLAEKISNHIDQY 462 (625)
Q Consensus 387 ~~~-~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~---~~~~~~d~~l~~~l~~~~~~v 462 (625)
... .++|++|+++.+.+.. ++...+++|.++.+...+......++++..|.... .....+|+|+++.++.+++.+
T Consensus 644 s~~~~~~d~~fs~~~v~~~~-~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v 722 (1159)
T PLN02882 644 SPVVRAEPLRFKEEGVFGVV-KDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFV 722 (1159)
T ss_pred CCcccCcCcccCHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 432 3688999999987644 34555666665544443322111134444443110 123568999999999999999
Q ss_pred HHHHHhccHHHHHHHHHHHHH-HHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 463 IEAMEKVKLKQGLRIGMSISS-EGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 463 ~~a~~~~~~~~a~~~i~~l~~-~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
.++|++|++++|+..|++|+. .+|+|++..+||.+.+.+...+.++++++.++++.++++|+||||++||+||++|+.
T Consensus 723 ~~~me~y~f~~A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~ 801 (1159)
T PLN02882 723 REEMGAYRLYTVVPYLVKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRK 801 (1159)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhcc
Confidence 999999999999999999996 699999999999877655556778999999999999999999999999999999975
No 21
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.7e-79 Score=711.19 Aligned_cols=499 Identities=17% Similarity=0.242 Sum_probs=398.0
Q ss_pred cccCCCCCC----CCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc-
Q 006917 12 RNHRVAKLP----VPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE- 86 (625)
Q Consensus 12 ~~~~~~~~p----~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~- 86 (625)
|.+...|.+ ..++++|+|++|||||||.|||||+++. +.+|+++||+||+|++|.|++|||+||+||+.+|+++
T Consensus 32 W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~-~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l 110 (912)
T PRK05743 32 WEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNK-ILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKL 110 (912)
T ss_pred HHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHH-HHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHc
Confidence 444444443 2466779999999999999999999995 5599999999999999999999999999999999885
Q ss_pred -----CCCHH-------HHHHHHHHHHHHHHhhcCc--ccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCC
Q 006917 87 -----NCTTQ-------QICDKYYAIHKAVYNWFNI--SFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDT 152 (625)
Q Consensus 87 -----g~~~~-------~~~~~~~~~~~~~~~~lgi--~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~ 152 (625)
++++. ++++++.+.++++|++||+ ++|+++.|+++.|...++++|.+|+++|+||++.++++||+.
T Consensus 111 ~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~ 190 (912)
T PRK05743 111 GKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPD 190 (912)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCC
Confidence 55665 5889999999999999999 456889999999999999999999999999999999999999
Q ss_pred CCcccccccccc---C-----------------------------CCC--Ccc-------------------cc------
Q 006917 153 CKRFLADRLVEG---S-----------------------------CPT--LGC-------------------NY------ 173 (625)
Q Consensus 153 ~~~~l~~~~v~g---~-----------------------------cp~--~~c-------------------~~------ 173 (625)
|++.|++.+|+. . .|+ ++| .+
T Consensus 191 ~~TaLad~Evey~~~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~ 270 (912)
T PRK05743 191 CGSALAEAEVEYHDKTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDL 270 (912)
T ss_pred cCCCchhhHhhcccccCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHh
Confidence 999999998861 1 111 000 00
Q ss_pred ----------------------C---------------------------------------------------------
Q 006917 174 ----------------------D--------------------------------------------------------- 174 (625)
Q Consensus 174 ----------------------~--------------------------------------------------------- 174 (625)
+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~v 350 (912)
T PRK05743 271 VESVLERFGWEDYEVLATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPV 350 (912)
T ss_pred HHHHHHhhCCcceEEEEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCccccc
Confidence 0
Q ss_pred CCCCccccccCCC----C------------------C--CCccCCCccccCCCccEEEeccceeeeccc--hHHHHHHHH
Q 006917 175 SARGDQCEKCGKL----L------------------N--PTELKDPRCKVCQATPKIRDTDHLFLELPL--IKDKLEEYI 228 (625)
Q Consensus 175 ~~~g~~ce~cg~~----~------------------~--~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~--~~~~l~~~~ 228 (625)
+..|...+.+|.+ + . .....+|+|||||++++++.++|||+++++ +++.+++.+
T Consensus 351 d~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~ 430 (912)
T PRK05743 351 DDDGRYTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAI 430 (912)
T ss_pred CCCceEecCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHH
Confidence 0001111111110 0 0 001147999999999999999999999998 999999999
Q ss_pred HhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCC-----------------------------------
Q 006917 229 NKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKF----------------------------------- 273 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~----------------------------------- 273 (625)
++..+. |...++++.+||++ ++||||||||.||+|||.+.+
T Consensus 431 ~~v~~~---P~~~~~r~~~~i~~-~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~ 506 (912)
T PRK05743 431 EKVKWI---PAWGKNRIESMVEN-RPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKE 506 (912)
T ss_pred cccEEE---ChHHHHHHHHHHhc-CcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHH
Confidence 987664 55567788999985 899999999999999999421
Q ss_pred -----------CCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccc--hhHhHHHHHhhcCCCCccC
Q 006917 274 -----------KDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAP--FHTVMFPSTLLGTEENWTL 340 (625)
Q Consensus 274 -----------~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~--fH~~~~pa~l~a~~~~~~~ 340 (625)
+.+|++|||||.+.+.+... ... +.|| |.| +|++|+||++ ||+.+|+++++ .|. +|
T Consensus 507 ~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~-~~~--~~~~--P~D---l~~~G~Di~r~Wf~~~l~~~~~~-~g~--~P 575 (912)
T PRK05743 507 LLPDEADEYEKETDILDVWFDSGSSHAAVLE-QRP--ELGY--PAD---LYLEGSDQHRGWFQSSLLTSVAT-RGK--AP 575 (912)
T ss_pred hcCCcccCEEECCchhhhhhhhCCCHHHHhc-Ccc--ccCC--Cce---EEEecccccchHHHHHHHHHHHh-cCC--Cc
Confidence 12456677776655544321 111 2467 467 9999999995 88999999988 554 58
Q ss_pred cceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHH
Q 006917 341 MKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNR 419 (625)
Q Consensus 341 ~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R 419 (625)
|+++++|||++ .+|+|||||+||+|+|.++++ .||+|+||||+++ +++++|++||.+.+.+. .++.++|+|+++.
T Consensus 576 ~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~-~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~--~~~~~kl~N~~rf 651 (912)
T PRK05743 576 YKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIK-KYGADILRLWVAS-TDYSGDVRISDEILKQV--AEAYRRIRNTLRF 651 (912)
T ss_pred cceeEEeeeEECCCCCCCCCCCCCcCCHHHHHH-hcChHHHHHHHHh-cCCCCCeeecHHHHHHH--HHHHHHHHHHHHH
Confidence 99999999998 599999999999999999998 8999999999997 88899999999998764 6788899999887
Q ss_pred HHHhhhCCCCCCCCC---CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHhHHHHhccc
Q 006917 420 VLSFIAKPPGRGYGS---IIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSIS--SEGNAYLQESQF 494 (625)
Q Consensus 420 ~~~~~~k~~~~~~~~---~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~--~~~N~y~~~~~p 494 (625)
+.+.+.. ++. .++. ......|+|+++.++.+++.+.++|++|+|++|++.|++|+ ..+|.|++..+|
T Consensus 652 ~~~nl~~-----~~~~~~~~~~---~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~ 723 (912)
T PRK05743 652 LLGNLND-----FDPAKDAVPY---EELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKD 723 (912)
T ss_pred HHhCccC-----CCcccccCCc---hhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccH
Confidence 7664432 211 1111 12456799999999999999999999999999999999999 578999999999
Q ss_pred cc--cccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcC
Q 006917 495 WK--LYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLN 539 (625)
Q Consensus 495 w~--l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg 539 (625)
|. ..+++. ...++..++..++..+++||+||||++||+||++|+
T Consensus 724 rly~~~~~~~-~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~ 769 (912)
T PRK05743 724 RLYTDAADSL-ARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLP 769 (912)
T ss_pred hhhcCCCCcH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 53 333332 233455677778888999999999999999999996
No 22
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-78 Score=674.62 Aligned_cols=498 Identities=22% Similarity=0.298 Sum_probs=404.1
Q ss_pred CCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc-CC-----------
Q 006917 21 VPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE-NC----------- 88 (625)
Q Consensus 21 ~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-g~----------- 88 (625)
..|++.|++..+|||+||.+|||||.|.+| .|++.||..|+||+|.+++||||||+||+.+++++ |+
T Consensus 45 ~~g~~~FvfhDGPPyANG~iHiGHalnKil-KDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~ 123 (933)
T COG0060 45 NKGKPKFVLHDGPPYANGNIHIGHALNKIL-KDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVE 123 (933)
T ss_pred hCCCCcEEEeCCCCCCCCCcchhhhHHHhh-hhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHH
Confidence 357788999999999999999999999876 99999999999999999999999999999888775 41
Q ss_pred ----CHHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCcccccccc
Q 006917 89 ----TTQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLV 162 (625)
Q Consensus 89 ----~~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v 162 (625)
.|++++.++.+.++++|++||+..| .-|.|+++.|...+.++|.+|+++|+||++..+++||++|++.|++.||
T Consensus 124 efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEv 203 (933)
T COG0060 124 EFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEV 203 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhh
Confidence 3678888999999999999999655 6789999999999999999999999999999999999999999999987
Q ss_pred cc-----------------------------CCCCC---------------------------------------c----
Q 006917 163 EG-----------------------------SCPTL---------------------------------------G---- 170 (625)
Q Consensus 163 ~g-----------------------------~cp~~---------------------------------------~---- 170 (625)
+. |.|+. +
T Consensus 204 ey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~ 283 (933)
T COG0060 204 EYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDY 283 (933)
T ss_pred cccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcce
Confidence 61 34540 0
Q ss_pred -------------c-----cc----C-----------------------CCCCc----cccccC------------CCCC
Q 006917 171 -------------C-----NY----D-----------------------SARGD----QCEKCG------------KLLN 189 (625)
Q Consensus 171 -------------c-----~~----~-----------------------~~~g~----~ce~cg------------~~~~ 189 (625)
- .. + .+.|. .|...| ++.+
T Consensus 284 ~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~ 363 (933)
T COG0060 284 EVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTE 363 (933)
T ss_pred EEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccc
Confidence 0 00 0 00110 111112 1111
Q ss_pred ------------CC-------------------ccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCC
Q 006917 190 ------------PT-------------------ELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWS 238 (625)
Q Consensus 190 ------------~~-------------------~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~ 238 (625)
.. ...+|+||||++|+++|.++|||++++.+++++++-+++..+.|.|-
T Consensus 364 ~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P~~~ 443 (933)
T COG0060 364 EAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDWG 443 (933)
T ss_pred cchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEEChhH
Confidence 00 12579999999999999999999999999999998888888877666
Q ss_pred hhHHHHHHHHHhcCCCCcccccccCCCcccCCCCC---------------------------------------------
Q 006917 239 QNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKF--------------------------------------------- 273 (625)
Q Consensus 239 ~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~--------------------------------------------- 273 (625)
.+++.+||. +.+||||||||.||+|+|.|.+
T Consensus 444 ---~~R~~~mve-~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g 519 (933)
T COG0060 444 ---KNRFGNMVE-NRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDG 519 (933)
T ss_pred ---HHHHHHHHc-CCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCc
Confidence 457889996 6999999999999999999520
Q ss_pred -----CCceeeeeccccchHHHhccCCCh-hhHhhcCCCCCcceEEEEeeccc--chhHhHHHHHhhcCCCCccCcceEE
Q 006917 274 -----KDKVFYVWFDAPIGYISITSCYTP-DWEEWWKNPENVALYQFMGKDNA--PFHTVMFPSTLLGTEENWTLMKTIS 345 (625)
Q Consensus 274 -----~~~viyvWfDa~~~yi~~~~~~~~-~~~~~w~~p~d~~~i~~~GkD~~--~fH~~~~pa~l~a~~~~~~~~~~i~ 345 (625)
..+|+||||||+..+.+....... .|..+| +| +...|.||. |||+.+-.+..+- | .+|++.++
T Consensus 520 ~~~~rv~DvlDVWFDSGs~~~a~~~~~~~~~~~~~~---aD---~~lEGsDQ~RGWF~Ssl~~s~a~~-~--~aPYk~vl 590 (933)
T COG0060 520 KEYRRVPDVLDVWFDSGSTPYAVLHPRENLKFPALF---AD---FYLEGSDQTRGWFYSSLLTSTALF-G--RAPYKNVL 590 (933)
T ss_pred ceeEecCcceEEEEcCCCCcccccCCcccccCcccc---Cc---EEEEeccccchhHHHHHHHHHHHc-C--CchHHHHh
Confidence 237999999999887665431111 122222 26 899999997 7999876665433 2 35889999
Q ss_pred eeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 006917 346 VTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFI 424 (625)
Q Consensus 346 ~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~ 424 (625)
+|||++ .+|+|||||+||+|+|.++++ +||+|+||+|+++ ++++.|+.||++.+... .+..++|+|.+++++..+
T Consensus 591 tHGfvlDe~GrKMSKSlGN~v~P~~V~~-~yGADiLRLwv~s-sd~~~dl~~s~~il~~~--~~~~r~irNt~rF~l~nl 666 (933)
T COG0060 591 THGFVLDEKGRKMSKSLGNVVDPQDVID-KYGADILRLWVAS-SDYWEDLRFSDEILKQV--REVYRKIRNTYRFLLGNL 666 (933)
T ss_pred hcccEECCCCCCccccCCCcCCHHHHHH-hhCchheeeeeee-cCchhccccCHHHHHHH--HHHHHHHHHHHHHHHHhc
Confidence 999975 899999999999999999998 8999999999998 55889999999997654 789999999999998886
Q ss_pred hCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHhHHHHhccc--cccccC
Q 006917 425 AKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSIS--SEGNAYLQESQF--WKLYNE 500 (625)
Q Consensus 425 ~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~--~~~N~y~~~~~p--w~l~k~ 500 (625)
.. |+.............+|+|+++.++.+.+.+.++|++|+|+++++.+++|+ ..+|+|++..+. |....
T Consensus 667 ~~-----fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~- 740 (933)
T COG0060 667 DD-----FDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAA- 740 (933)
T ss_pred cC-----CCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCC-
Confidence 64 443221111124567899999999999999999999999999999999999 359999998876 54433
Q ss_pred CHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCC
Q 006917 501 DQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPT 542 (625)
Q Consensus 501 ~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~ 542 (625)
+...+.++..++..++..+.++|+||+|++||+||+.|....
T Consensus 741 ~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~ 782 (933)
T COG0060 741 DSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGER 782 (933)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccCC
Confidence 334445678889999999999999999999999999997653
No 23
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=8.6e-78 Score=705.41 Aligned_cols=509 Identities=19% Similarity=0.232 Sum_probs=406.4
Q ss_pred cccCCCCCCC------CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHH
Q 006917 12 RNHRVAKLPV------PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAME 85 (625)
Q Consensus 12 ~~~~~~~~p~------~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~ 85 (625)
|.+...|.+. .++++|+|++|||||||.|||||+++.+ .+|+++||+||+|++|++++|||+||++++..+++
T Consensus 41 W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~-~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~ 119 (995)
T PTZ00419 41 WEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGA-IQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEK 119 (995)
T ss_pred HHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHH-HHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHH
Confidence 4455555542 3567799999999999999999999965 59999999999999999999999999999766543
Q ss_pred -----cCCC------------HHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeee
Q 006917 86 -----ENCT------------TQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQ 146 (625)
Q Consensus 86 -----~g~~------------~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~ 146 (625)
.|++ |.++++++...++++|++||+++| +++.|+++.|.+.++++|.+|+++|+||++.++
T Consensus 120 ~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~ 199 (995)
T PTZ00419 120 KLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRL 199 (995)
T ss_pred HHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccee
Confidence 3544 346789999999999999999888 788999999999999999999999999999999
Q ss_pred eeeeCCCCccccccccc---------------------c---------------------CCCC--Cccc----------
Q 006917 147 QLYCDTCKRFLADRLVE---------------------G---------------------SCPT--LGCN---------- 172 (625)
Q Consensus 147 ~~y~~~~~~~l~~~~v~---------------------g---------------------~cp~--~~c~---------- 172 (625)
++|||.|+|.|++.+|+ | |.|+ .||.
T Consensus 200 V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~ 279 (995)
T PTZ00419 200 VNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDER 279 (995)
T ss_pred eecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcH
Confidence 99999999999999875 2 1121 0110
Q ss_pred --------------------------c-CCCCCc---------------------------------cccccCCCC----
Q 006917 173 --------------------------Y-DSARGD---------------------------------QCEKCGKLL---- 188 (625)
Q Consensus 173 --------------------------~-~~~~g~---------------------------------~ce~cg~~~---- 188 (625)
+ +..+|. ..+.+|.+-
T Consensus 280 y~~l~G~~~~~Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~ 359 (995)
T PTZ00419 280 YKKLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHR 359 (995)
T ss_pred HHHhcCCEEECCccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCH
Confidence 0 000111 111122110
Q ss_pred --------------------CCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHH
Q 006917 189 --------------------NPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAW 248 (625)
Q Consensus 189 --------------------~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (625)
.+.....|+|||||++++.+.++|||++++.+++.+.+++++.+. ...|...++++.+|
T Consensus 360 ~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i-~~~P~~~~~~~~~w 438 (995)
T PTZ00419 360 FDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGEL-KIIPSSHENVWYHW 438 (995)
T ss_pred HHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCe-EEEChHHHHHHHHH
Confidence 000124699999999999999999999999999999999975442 13467778889999
Q ss_pred HhcCCCCcccccccCCCcccCCCCC-------------------------------------------CCceeeeecccc
Q 006917 249 LKDGLKPRCITRDLKWGVPVPHEKF-------------------------------------------KDKVFYVWFDAP 285 (625)
Q Consensus 249 l~~~l~d~~IsR~~~WGi~vP~~~~-------------------------------------------~~~viyvWfDa~ 285 (625)
|. +++|||||||+.||+|||.|.+ +.+|+||||||+
T Consensus 439 l~-~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~ 517 (995)
T PTZ00419 439 LE-NIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSG 517 (995)
T ss_pred Hh-ccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCC
Confidence 97 4999999999999999998621 248999999999
Q ss_pred chHHHhccCCC---hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCC---CccCcceEEeeeeee-cCCcccc
Q 006917 286 IGYISITSCYT---PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEE---NWTLMKTISVTEYLN-YEAGKFS 358 (625)
Q Consensus 286 ~~yi~~~~~~~---~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~---~~~~~~~i~~hg~l~-~~G~KMS 358 (625)
+.|++.+ +|+ +++++||| .| +++.|+||++| |++.++.++. +..|++.+++||++. .+|+|||
T Consensus 518 l~p~~~~-g~p~~~~~~~~~~P--~d---~~~~G~Dii~~----W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMS 587 (995)
T PTZ00419 518 LFPFSTL-GWPDQTDDLQRFFP--TS---LLETGSDILFF----WVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMS 587 (995)
T ss_pred HHHHHHh-CCCCChHHHhhcCC--Cc---EEEechhHHhH----HHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcc
Confidence 9998765 564 35788885 56 99999999985 5555544432 123568999999997 5999999
Q ss_pred ccCCcccCchhhhhc------------------------------------CCCchhHHHHHHhcCCCCCCCCcCHHHHH
Q 006917 359 KSKGVGVFGNDVKDT------------------------------------NIPAEVWRYYLITNRPEVSDTLFTWEDFQ 402 (625)
Q Consensus 359 KS~GN~I~~~d~l~~------------------------------------~~g~D~lR~~ll~~~~~~~d~~fs~~~~~ 402 (625)
||+||||+|.++++. .||+|+||||+++.++.++|++|+.+.+.
T Consensus 588 KSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~ 667 (995)
T PTZ00419 588 KSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVV 667 (995)
T ss_pred cCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHH
Confidence 999999999999861 59999999999998888999999999887
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCC----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q 006917 403 AKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPD----SPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIG 478 (625)
Q Consensus 403 ~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~----~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i 478 (625)
.. .+++++++|+++|++..+.. ......+. .........|+|+++.++.+++.+.++|++|+|+.|++.+
T Consensus 668 ~~--~~f~nklwN~~rf~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i 741 (995)
T PTZ00419 668 GY--RHFCNKLWNAVKFALMKLLK----DFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQAT 741 (995)
T ss_pred HH--HHHHHHHHHHHHHHHhcccc----cccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 54 78999999999999877654 11111000 0001234579999999999999999999999999999999
Q ss_pred HHHH--HHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcC
Q 006917 479 MSIS--SEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLN 539 (625)
Q Consensus 479 ~~l~--~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg 539 (625)
++|+ ..+|+|++..+||.....+......+..++..+++.+++||+|||||+||+||++|+
T Consensus 742 ~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~ 804 (995)
T PTZ00419 742 YNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLP 804 (995)
T ss_pred HHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhh
Confidence 9974 679999999999973223334455678889999999999999999999999999996
No 24
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.5e-77 Score=692.09 Aligned_cols=504 Identities=17% Similarity=0.208 Sum_probs=397.4
Q ss_pred cccCCCCCCC----CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcC
Q 006917 12 RNHRVAKLPV----PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEEN 87 (625)
Q Consensus 12 ~~~~~~~~p~----~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 87 (625)
|++...|.+. .++++|+|+.|||||||.||||||+|.++ .|+++||+||+|++|.|++|||+||+||+.++++..
T Consensus 37 W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~l-kDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~ 115 (961)
T PRK13804 37 WEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKIL-KDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKY 115 (961)
T ss_pred HHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHH-HHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhh
Confidence 4444555442 35677999999999999999999999655 999999999999999999999999999999887653
Q ss_pred ----C------------CHHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeee
Q 006917 88 ----C------------TTQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLY 149 (625)
Q Consensus 88 ----~------------~~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y 149 (625)
+ .|.++++++.+.++++|++||++.| +.+.|+++.|...++++|.+|+++|+||++..+++|
T Consensus 116 ~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~W 195 (961)
T PRK13804 116 RAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMW 195 (961)
T ss_pred hhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceec
Confidence 3 2456888899999999999999865 778999999999999999999999999999999999
Q ss_pred eCCCCcccccccccc-------------------------------CCCC--Ccc-------------------------
Q 006917 150 CDTCKRFLADRLVEG-------------------------------SCPT--LGC------------------------- 171 (625)
Q Consensus 150 ~~~~~~~l~~~~v~g-------------------------------~cp~--~~c------------------------- 171 (625)
|+.|++.|++.+|+. |.|+ ++|
T Consensus 196 cp~~~TaLa~~Evey~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~ 275 (961)
T PRK13804 196 SVVERTALAEAEIEYHDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWA 275 (961)
T ss_pred CCCCCCCccchhcccccccCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccc
Confidence 999999999987751 1111 000
Q ss_pred ----c-------------------cC--------------------CC------------------CCccc---------
Q 006917 172 ----N-------------------YD--------------------SA------------------RGDQC--------- 181 (625)
Q Consensus 172 ----~-------------------~~--------------------~~------------------~g~~c--------- 181 (625)
. ++ .. .|..|
T Consensus 276 ~~~e~~iva~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~ 355 (961)
T PRK13804 276 KPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGR 355 (961)
T ss_pred cCCcEEEeHHHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEEEecCccCCCCCCceEEeCCCCCH
Confidence 0 00 00 01000
Q ss_pred ------------------cccCCCCC--CC-------------------------------------ccCCCccccCCCc
Q 006917 182 ------------------EKCGKLLN--PT-------------------------------------ELKDPRCKVCQAT 204 (625)
Q Consensus 182 ------------------e~cg~~~~--~~-------------------------------------~l~~~~~~~~g~~ 204 (625)
+.-|++.+ +. ...+|+|||||++
T Consensus 356 ~Dy~~~~~~~l~~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~p 435 (961)
T PRK13804 356 EDFNVWMKYGRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKP 435 (961)
T ss_pred HHHHHHHHcCCCcccccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCe
Confidence 00111100 00 0146999999999
Q ss_pred cEEEeccceeeeccc-------hHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCC----
Q 006917 205 PKIRDTDHLFLELPL-------IKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKF---- 273 (625)
Q Consensus 205 ~~~~~~~~~f~~l~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~---- 273 (625)
++.+.++|||++++. +++.+++.++++.+. |...++++.+||. +++||||||||.||+|||.+.+
T Consensus 436 ii~r~t~QWFi~~~~~~~~~~~~k~~al~~i~~v~~~---P~~~~~r~~~~i~-~~~DWcISRQR~WG~PIP~~~~~~~~ 511 (961)
T PRK13804 436 VIFRNTPQWFISMDKDLGDGTTLRSRALDAIDKTRFV---PAAGQNRLYNMIE-DRPDWVISRQRAWGVPIPIFVAEDGE 511 (961)
T ss_pred EEEeccccccEEcCCcccchHHHHHHHHHHHhccEEE---CHHHHHHHHHHHh-cCccceeeeeccCCceeeEEEcCCCC
Confidence 999999999999998 999999999988765 5556778899997 4899999999999999998310
Q ss_pred --------------------------------------------CCceeeeeccccchHHHhccCCChhhHhhcCCCCCc
Q 006917 274 --------------------------------------------KDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENV 309 (625)
Q Consensus 274 --------------------------------------------~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~ 309 (625)
+.+|+||||||.+.+.... +...++ +| |.|
T Consensus 512 ~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~-~~~~~~--~~--PaD- 585 (961)
T PRK13804 512 ILMDEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVL-EDRPDL--KW--PAD- 585 (961)
T ss_pred EeccHHHHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCccccc-cCCccc--CC--Cce-
Confidence 2478999999987654332 111222 46 467
Q ss_pred ceEEEEeecccc--hhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHh
Q 006917 310 ALYQFMGKDNAP--FHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 310 ~~i~~~GkD~~~--fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+|++|+||++ ||+.+..+.... |. +||+++++|||++ .+|+|||||+||+|+|.++++ .||+|+||||+++
T Consensus 586 --~~~eG~Di~rgWF~s~ll~s~~~~-~~--~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~-~yGaD~lRl~lls 659 (961)
T PRK13804 586 --LYLEGSDQHRGWFNSSLLESCGTR-GR--APYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIK-QSGADILRLWVAS 659 (961)
T ss_pred --EEEEEcccccHHHHHHHHHHHHhc-CC--CChhhEEEeccEECCCCCCccCCCCCcCCHHHHHH-hcCHHHHHHHHHh
Confidence 9999999995 898544333211 22 4789999999998 599999999999999999998 8999999999997
Q ss_pred cCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 006917 387 NRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAM 466 (625)
Q Consensus 387 ~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~ 466 (625)
+++++|++||++.+... +++.++|+|+++++++.+.+ ++..............|+|+++.++.+++.+.++|
T Consensus 660 -~~~~~D~~fs~~~l~~~--~~~~~kL~N~~rf~l~nl~~-----~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~ 731 (961)
T PRK13804 660 -VDYSDDQRIGKEILKQV--SETYRKLRNTLRWLLGNLAH-----FDPGEDVVAYADLPELERYMLHRLNELDGLVREAY 731 (961)
T ss_pred -CCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhcccc-----CCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999998764 78899999999888777664 22111000012345679999999999999999999
Q ss_pred HhccHHHHHHHHHHHH--HHHhHHHHhccccccccC-CHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 467 EKVKLKQGLRIGMSIS--SEGNAYLQESQFWKLYNE-DQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 467 ~~~~~~~a~~~i~~l~--~~~N~y~~~~~pw~l~k~-~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
++|+|++|++.+++|+ ..+|.|++..+||..... +.....++..++..+++.+++||+||||++||+||++|+.
T Consensus 732 e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~ 808 (961)
T PRK13804 732 DAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYP 808 (961)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhccc
Confidence 9999999999999998 358999999999854321 3333455677888889999999999999999999999983
No 25
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=1.6e-76 Score=687.21 Aligned_cols=503 Identities=17% Similarity=0.236 Sum_probs=399.3
Q ss_pred ccccCCCCCCC---CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc-
Q 006917 11 ERNHRVAKLPV---PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE- 86 (625)
Q Consensus 11 ~~~~~~~~~p~---~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~- 86 (625)
.|.+...|.+. ..+++|+|++|||||||.||||||++.++ +|+++||+||+|++|.|++|||+||+||+.++++.
T Consensus 15 ~W~~~~~y~~~~~~~~~~~f~i~~~PPy~nG~lHiGHa~~~~l-kDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l 93 (974)
T PLN02843 15 LWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKIL-KDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSL 93 (974)
T ss_pred HHHHCCCccccccccCCCCEEEeCCCCCCCCCcchhHHHHHHH-HHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHh
Confidence 34555555542 23466999999999999999999999765 99999999999999999999999999999998553
Q ss_pred ------CCCH-------HHHHHHHHHHHHHHHhhcCc--ccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeC
Q 006917 87 ------NCTT-------QQICDKYYAIHKAVYNWFNI--SFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCD 151 (625)
Q Consensus 87 ------g~~~-------~~~~~~~~~~~~~~~~~lgi--~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~ 151 (625)
+.++ .++++++...++++|++||+ ++|+.+.|+++.|...++++|.+|+++|+||++.++++||+
T Consensus 94 ~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp 173 (974)
T PLN02843 94 DQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSP 173 (974)
T ss_pred chhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecC
Confidence 2344 45578888889999999999 55588899999999999999999999999999999999999
Q ss_pred CCCccccccccccC----C-----------------------------------CC--Ccc----------------c--
Q 006917 152 TCKRFLADRLVEGS----C-----------------------------------PT--LGC----------------N-- 172 (625)
Q Consensus 152 ~~~~~l~~~~v~g~----c-----------------------------------p~--~~c----------------~-- 172 (625)
+|++.|++.+|+.. . |+ +++ +
T Consensus 174 ~~~Talae~Evey~e~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~ 253 (974)
T PLN02843 174 SSRTALAEAELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSF 253 (974)
T ss_pred CCCCcchHhHhcccCCccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECCCCceEEEEeccc
Confidence 99999999887520 0 10 000 0
Q ss_pred -----------------------------------------------------cC-------------------------
Q 006917 173 -----------------------------------------------------YD------------------------- 174 (625)
Q Consensus 173 -----------------------------------------------------~~------------------------- 174 (625)
.+
T Consensus 254 ~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~pii~~~~~V~ 333 (974)
T PLN02843 254 SEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYNRESPVVIGGDYIT 333 (974)
T ss_pred cccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCCCCceeEEecCCccC
Confidence 00
Q ss_pred ---------------------------------CCCCccccccCC----CC--CCC-------------------ccCCC
Q 006917 175 ---------------------------------SARGDQCEKCGK----LL--NPT-------------------ELKDP 196 (625)
Q Consensus 175 ---------------------------------~~~g~~ce~cg~----~~--~~~-------------------~l~~~ 196 (625)
+..|...+.+|. .. +.. ...+|
T Consensus 334 ~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp 413 (974)
T PLN02843 334 TESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYP 413 (974)
T ss_pred CCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCC
Confidence 001111111111 00 010 12469
Q ss_pred ccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCC---
Q 006917 197 RCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKF--- 273 (625)
Q Consensus 197 ~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~--- 273 (625)
+|||||++++.+.++|||++++.+++.+++.++++.+.|. ..++++.+||.. ++|||||||+.||+|||.+.+
T Consensus 414 ~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~~v~~~P~---~~~~r~~~~i~~-~~DWcISRQr~WG~pIP~~~~~~~ 489 (974)
T PLN02843 414 YDWRTKKPTIFRATEQWFASVEGFRQAALDAIDKVKWIPA---QGENRIRAMVSG-RSDWCISRQRTWGVPIPVFYHVET 489 (974)
T ss_pred ccCCCCCeEEEEecCceeEeCHHHHHHHHHHHhccEEECh---HHHHHHHHHHhc-CcceeeeeccccccEEEEEEEcCC
Confidence 9999999999999999999999999999999998877654 456788999975 899999999999999995310
Q ss_pred -----------------------------------------------CCceeeeeccccchHHHhccCCChhhHhhcCCC
Q 006917 274 -----------------------------------------------KDKVFYVWFDAPIGYISITSCYTPDWEEWWKNP 306 (625)
Q Consensus 274 -----------------------------------------------~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p 306 (625)
+.+|+||||||.+.+.+... .. .+.+| |
T Consensus 490 ~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~-~~--~~~~~--P 564 (974)
T PLN02843 490 KEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLG-SR--EGLSY--P 564 (974)
T ss_pred CCEeechhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhc-cc--cccCC--C
Confidence 23789999999998765432 11 23356 4
Q ss_pred CCcceEEEEeecccc--hhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCCcccCchhhhhc--------CC
Q 006917 307 ENVALYQFMGKDNAP--FHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDT--------NI 375 (625)
Q Consensus 307 ~d~~~i~~~GkD~~~--fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~--------~~ 375 (625)
.| +|+.|+||++ ||+.+|+++. ..|. +|++++++|||++ .+|+|||||+||||+|.++++. .|
T Consensus 565 aD---l~~eG~Di~rgWf~s~l~~~~~-~~g~--~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~y 638 (974)
T PLN02843 565 AD---LYLEGSDQHRGWFQSSLLTSVA-TKGK--APYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAY 638 (974)
T ss_pred ce---eeeeeccccchHHHHHHHHHHH-hcCC--CccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhcccccccccc
Confidence 67 9999999997 9999999874 3454 4789999999987 5899999999999999999972 49
Q ss_pred CchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCC--CCCCCCCCCCcHHHHHHHH
Q 006917 376 PAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGS--IIPDSPKADLHPSTKMLAE 453 (625)
Q Consensus 376 g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~--~~p~~~~~~~~~~d~~l~~ 453 (625)
|+|+||||+++ .++++|++|+.+.+.+. .+..++|+|.++++++.+.. ++. .++. ......|+|+++
T Consensus 639 GaD~lR~~l~~-~~~~~d~~~s~~~l~~~--~~~~~kl~n~~rf~lgnl~~-----~~~~~~~~~---~~~~~~D~wiLs 707 (974)
T PLN02843 639 GADVLRLWVAS-VDYTGDVLIGPQILKQM--SDIYRKLRGTLRYLLGNLHD-----WKPDNAVPY---EDLPSIDKYALF 707 (974)
T ss_pred ChHHHHHHHHh-cccCCCceeCHHHHHHH--HHHHHHHHHHHHHHHhCccC-----CCcccccCc---cccCHHHHHHHH
Confidence 99999999997 77889999999988765 57788899999888765543 221 1111 123467999999
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHH--HHHHhHHHHhccccccccC-CHhhHHHHHHHHHHHHHHHHHHhhchhhHH
Q 006917 454 KISNHIDQYIEAMEKVKLKQGLRIGMSI--SSEGNAYLQESQFWKLYNE-DQGSCSIVIRTSVGLVYLLACLLEPFMPSF 530 (625)
Q Consensus 454 ~l~~~~~~v~~a~~~~~~~~a~~~i~~l--~~~~N~y~~~~~pw~l~k~-~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ 530 (625)
.++.+++.+.++|++|+|++|++.|++| ...+|.|++..+||...+. +...+..+..++..++..++++|+||||++
T Consensus 708 kL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~ 787 (974)
T PLN02843 708 QLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHL 787 (974)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 9999999999999999999999999988 4689999999999977542 332333455667778888999999999999
Q ss_pred HHHHHHHcCC
Q 006917 531 SLEVLKQLNV 540 (625)
Q Consensus 531 ae~i~~~Lg~ 540 (625)
||+||++|+.
T Consensus 788 aEEiw~~L~~ 797 (974)
T PLN02843 788 AEDAWQNLPF 797 (974)
T ss_pred HHHHHHhccc
Confidence 9999999985
No 26
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=2.2e-76 Score=688.99 Aligned_cols=509 Identities=17% Similarity=0.208 Sum_probs=402.3
Q ss_pred cccCCCCCCC--CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc---
Q 006917 12 RNHRVAKLPV--PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE--- 86 (625)
Q Consensus 12 ~~~~~~~~p~--~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~--- 86 (625)
|.+...|.+. .++++|+|++|||||||.|||||+++.++ +|+++||+||+|++|+|++|||+||+|++.++++.
T Consensus 113 W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti-~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~ 191 (1066)
T PLN02381 113 WEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTAAI-EDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMR 191 (1066)
T ss_pred HHHCCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHHHHH-HHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHh
Confidence 5556667664 35677999999999999999999999655 99999999999999999999999999999998753
Q ss_pred --CCC------------HHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeee
Q 006917 87 --NCT------------TQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYC 150 (625)
Q Consensus 87 --g~~------------~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~ 150 (625)
|++ |.++++++...++++|++||+++| +.+.|+++.|...|+++|.+|+++|+||++.++++||
T Consensus 192 ~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWc 271 (1066)
T PLN02381 192 ERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWD 271 (1066)
T ss_pred hcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCC
Confidence 543 447788999999999999999887 5577999999999999999999999999999999999
Q ss_pred CCCCccccccccc---------------------c--------------------CCCC--Cccc---------------
Q 006917 151 DTCKRFLADRLVE---------------------G--------------------SCPT--LGCN--------------- 172 (625)
Q Consensus 151 ~~~~~~l~~~~v~---------------------g--------------------~cp~--~~c~--------------- 172 (625)
|.|+|.|++.+|+ | +.|. .||.
T Consensus 272 P~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~ 351 (1066)
T PLN02381 272 CTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLH 351 (1066)
T ss_pred CCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhC
Confidence 9999999999664 1 0000 0110
Q ss_pred ------------------c---C---------------------------------CCCCccccccC-CC----------
Q 006917 173 ------------------Y---D---------------------------------SARGDQCEKCG-KL---------- 187 (625)
Q Consensus 173 ------------------~---~---------------------------------~~~g~~ce~cg-~~---------- 187 (625)
. + +..|...+.|| .+
T Consensus 352 G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~ 431 (1066)
T PLN02381 352 GKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAARE 431 (1066)
T ss_pred CCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHH
Confidence 0 0 11122222222 10
Q ss_pred ------------C--CCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHH-----HhCCCCCCCChhHHHHHHHH
Q 006917 188 ------------L--NPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYI-----NKMSVSGSWSQNAIQGTYAW 248 (625)
Q Consensus 188 ------------~--~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~ 248 (625)
+ .+.+...|+|||||++++.+.++|||++++.+++.+.+.+ +++.+ .|....++..+|
T Consensus 432 ~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~---~P~~~~~~~~~w 508 (1066)
T PLN02381 432 AVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEF---IPKQYLAEWKRW 508 (1066)
T ss_pred HHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEE---EChHHHHHHHHH
Confidence 0 1112357999999999999999999999999999999988 33333 366667788999
Q ss_pred HhcCCCCcccccccCCCcccCCCCC-------------------------------------------CCceeeeecccc
Q 006917 249 LKDGLKPRCITRDLKWGVPVPHEKF-------------------------------------------KDKVFYVWFDAP 285 (625)
Q Consensus 249 l~~~l~d~~IsR~~~WGi~vP~~~~-------------------------------------------~~~viyvWfDa~ 285 (625)
|. +++|||||||+.||+|||.|.+ +.+|+||||||.
T Consensus 509 l~-n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg 587 (1066)
T PLN02381 509 LE-NIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSG 587 (1066)
T ss_pred Hh-cCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCC
Confidence 97 5899999999999999998732 347899999999
Q ss_pred chHHHhccCCC---hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccC
Q 006917 286 IGYISITSCYT---PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSK 361 (625)
Q Consensus 286 ~~yi~~~~~~~---~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~ 361 (625)
+.+++.+ +|+ ++|+.||| .| +.+.|.||++|+-.....+-+.+... .|++.+++||++. .+|+|||||+
T Consensus 588 ~~p~~~l-g~P~~~~~~~~~~P--~d---~~~~G~Dii~~W~~rmi~~~~~~~~~-~PFk~v~~hG~V~D~~G~KMSKS~ 660 (1066)
T PLN02381 588 LFPLSVL-GWPDDTDDLKAFYP--TS---VLETGHDILFFWVARMVMMGMQLGGD-VPFRKVYLHPMIRDAHGRKMSKSL 660 (1066)
T ss_pred chHHHHh-cCCCCHHHHhccCC--Ce---eeeecchhhhhHHHHHHHHHHHhCCC-CchHHheecceEECCCCCCCCCCC
Confidence 9998765 564 35777774 57 88899999987544433333323222 5789999999987 8999999999
Q ss_pred CcccCchhhhhc------------------------------------CCCchhHHHHHHhcCCCCCCCCcCHHHHHHHH
Q 006917 362 GVGVFGNDVKDT------------------------------------NIPAEVWRYYLITNRPEVSDTLFTWEDFQAKL 405 (625)
Q Consensus 362 GN~I~~~d~l~~------------------------------------~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~ 405 (625)
||||+|.++++. .||+|+||||+++.++.++|++|+...+...
T Consensus 661 GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~- 739 (1066)
T PLN02381 661 GNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGY- 739 (1066)
T ss_pred CCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHH-
Confidence 999999999872 4899999999998888889999999998754
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--H
Q 006917 406 NTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSIS--S 483 (625)
Q Consensus 406 n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~--~ 483 (625)
.+++++|+|++++++..+.. .++... ..........|+|+++.++.+++.+.++|++|+|+.|++.|++|+ .
T Consensus 740 -r~f~nKlwNa~rf~~~~~~~----~~~~~~-~~~~~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~d 813 (1066)
T PLN02381 740 -RQWCNKLWNAVRFAMSKLGD----DYTPPA-TLSVETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQ 813 (1066)
T ss_pred -HHHHHHHHHHHHHHHhhccc----ccCccc-ccCccccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 78999999999887654321 111100 000012346899999999999999999999999999999999995 6
Q ss_pred HHhHHHHhccccccccCC--HhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcC
Q 006917 484 EGNAYLQESQFWKLYNED--QGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLN 539 (625)
Q Consensus 484 ~~N~y~~~~~pw~l~k~~--~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg 539 (625)
.+|+|++..+||...... ......+..++..++..+.+||+|||||++|+||+.|+
T Consensus 814 l~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~ 871 (1066)
T PLN02381 814 FCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLP 871 (1066)
T ss_pred hHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Confidence 799999999998754321 12233456778888899999999999999999999996
No 27
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=7.8e-76 Score=682.33 Aligned_cols=492 Identities=19% Similarity=0.235 Sum_probs=394.7
Q ss_pred ccccCCCCCCCC-CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcC--
Q 006917 11 ERNHRVAKLPVP-GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEEN-- 87 (625)
Q Consensus 11 ~~~~~~~~~p~~-~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g-- 87 (625)
.|.+...|.+.. ++++|+|+.||||+||.|||||+++. +.+|+++||+||+|++|+|++|+|+||+||+..|++..
T Consensus 10 ~W~~~~~fe~~~~~~~kf~i~~ppPy~nG~lH~GH~~~~-~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~ 88 (938)
T TIGR00395 10 RWEEAHIFEADPDDREKFFLTMAYPYLNGVMHAGHCRTF-TIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRR 88 (938)
T ss_pred HHHhCCCcccCCCCCCceEEecCCCCCCCCcccchhhhh-hHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhh
Confidence 455666677643 46779999999999999999999985 55999999999999999999999999999999887721
Q ss_pred ----------------------CCHHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEe
Q 006917 88 ----------------------CTTQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEY 143 (625)
Q Consensus 88 ----------------------~~~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~ 143 (625)
.+|.++++++...++++|++||+++| +.+.|+++.|.+.|++.|.+|+++|+||++
T Consensus 89 ~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g 168 (938)
T TIGR00395 89 DELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKG 168 (938)
T ss_pred hhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecC
Confidence 35688889999999999999999988 466799999999999999999999999999
Q ss_pred eeeeeeeCCCCcccccccccc---------------------------CCCC--Ccc---------c-------------
Q 006917 144 TTQQLYCDTCKRFLADRLVEG---------------------------SCPT--LGC---------N------------- 172 (625)
Q Consensus 144 ~~~~~y~~~~~~~l~~~~v~g---------------------------~cp~--~~c---------~------------- 172 (625)
.++++|||.|++.++|.++.. +.|. .|| .
T Consensus 169 ~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~ 248 (938)
T TIGR00395 169 EHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWIT 248 (938)
T ss_pred CeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEE
Confidence 999999999999999988741 1121 000 0
Q ss_pred ---------c--------------C-------------------------------------------------------
Q 006917 173 ---------Y--------------D------------------------------------------------------- 174 (625)
Q Consensus 173 ---------~--------------~------------------------------------------------------- 174 (625)
+ +
T Consensus 249 s~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~ 328 (938)
T TIGR00395 249 SKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEY 328 (938)
T ss_pred eHHHHHhhhhcccceeEEEEEchHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchh
Confidence 0 0
Q ss_pred ------------------CCCCcc-----c--------------------------------cccCCCC-----------
Q 006917 175 ------------------SARGDQ-----C--------------------------------EKCGKLL----------- 188 (625)
Q Consensus 175 ------------------~~~g~~-----c--------------------------------e~cg~~~----------- 188 (625)
+.+|+. | +.||.+-
T Consensus 329 ~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i 408 (938)
T TIGR00395 329 LGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKV 408 (938)
T ss_pred cCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHHHhHHHH
Confidence 000100 0 0111110
Q ss_pred -----------CCCcc-CCCccccCCCccEEE-eccceeeecc--chHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCC
Q 006917 189 -----------NPTEL-KDPRCKVCQATPKIR-DTDHLFLELP--LIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGL 253 (625)
Q Consensus 189 -----------~~~~l-~~~~~~~~g~~~~~~-~~~~~f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 253 (625)
.-.++ ..|+|+|||++++++ .++|||++++ .+++.++++++++.+ +|+..++.+.+||+ ++
T Consensus 409 ~~~L~~~g~~~~~~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~---~P~~~~~~~~~~l~-~l 484 (938)
T TIGR00395 409 KADLIDAGLADVMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRI---IPEEVKNAFEGKID-WL 484 (938)
T ss_pred HHHHHHCCCceEeeecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEE---eCHHHHHHHHHHHh-hh
Confidence 00012 347899999999997 9999999999 599999999998754 57778888999997 59
Q ss_pred CCcccccccCCCcccCCCC------CCCceeeeeccccchHHHhcc------------------------CCC-------
Q 006917 254 KPRCITRDLKWGVPVPHEK------FKDKVFYVWFDAPIGYISITS------------------------CYT------- 296 (625)
Q Consensus 254 ~d~~IsR~~~WGi~vP~~~------~~~~viyvWfDa~~~yi~~~~------------------------~~~------- 296 (625)
+|||||||+.||+|+|++. .+++++|+||++..+|++... +++
T Consensus 485 ~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~~~~~~~l~~ev~D~~~~~~~~~~~t~~~~~~~~~~ 564 (938)
T TIGR00395 485 KDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDYYGNEQMTDEFFDYIFLGKGDVKNTNIPLPAIQKL 564 (938)
T ss_pred hhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhccCCChHHCCcccCceEEECCCChhhcCCCHHHHHHH
Confidence 9999999999999999632 236899999999999886421 011
Q ss_pred -hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCC-ccCcceEEeeeeeecCCccccccCCcccCchhhhhcC
Q 006917 297 -PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEEN-WTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTN 374 (625)
Q Consensus 297 -~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~-~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~ 374 (625)
.+|++||| .| +|++|+||++||+.+|. +++.+..+ .+.|+.+++||||+.+|+|||||+||+|+|.++++ .
T Consensus 565 ~~ef~~~yP--~D---~~~~GkDii~~H~~~~i-~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~-~ 637 (938)
T TIGR00395 565 RREFEYWYP--LD---WRISGKDLIPNHLTFYI-FHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVE-K 637 (938)
T ss_pred HHHHhhcCC--ce---EEEEeeccccchHHHHH-HHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHH-H
Confidence 25777885 57 99999999999999994 44444332 12469999999999999999999999999999998 7
Q ss_pred CCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHH
Q 006917 375 IPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEK 454 (625)
Q Consensus 375 ~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~ 454 (625)
||+|++||||++.+++++|++|+++.+.+..| .+++++|++.|+..... ...+ ......|+|+++.
T Consensus 638 yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~--~l~~l~n~~~~~~~~~~--------~~~~----~~~~~~D~wlls~ 703 (938)
T TIGR00395 638 FGADVARLYIADAAETVQDADWKESEVEGTIL--RLERLYEFAEEITKESN--------LETG----EETSFIDRWLESR 703 (938)
T ss_pred cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHH--HHHHHHHHHHHHHhhcc--------cCCC----ccCChHHHHHHHH
Confidence 99999999999988999999999999998754 47799999888754321 1110 1134578999999
Q ss_pred HHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q 006917 455 ISNHIDQYIEAMEKVKLKQGL-RIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLE 533 (625)
Q Consensus 455 l~~~~~~v~~a~~~~~~~~a~-~~i~~l~~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~ 533 (625)
++.+++.+.++|++|+++.|+ ..+++|+..+|+|+...++ +. ..++.++++.+++||+|||||+||+
T Consensus 704 l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~~n~Yl~~~~~---------~~---~~~l~~~l~~~~~LLaP~~P~~aEe 771 (938)
T TIGR00395 704 MNAAIKETYEAMENFQTRKAVKYALFDLQADVDWYRRRGGV---------NH---KDVLARYLETWIKLLAPFAPHFAEE 771 (938)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCcc---------hH---HHHHHHHHHHHHHHhcCcccHHHHH
Confidence 999999999999999999999 6788999999999875321 12 2357788999999999999999999
Q ss_pred HHHHcCC
Q 006917 534 VLKQLNV 540 (625)
Q Consensus 534 i~~~Lg~ 540 (625)
||++||.
T Consensus 772 iw~~Lg~ 778 (938)
T TIGR00395 772 MWEEVGN 778 (938)
T ss_pred HHHHcCC
Confidence 9999984
No 28
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=5.2e-75 Score=677.88 Aligned_cols=514 Identities=17% Similarity=0.200 Sum_probs=394.9
Q ss_pred ccccCCCCCCC----CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc
Q 006917 11 ERNHRVAKLPV----PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE 86 (625)
Q Consensus 11 ~~~~~~~~~p~----~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~ 86 (625)
.|++...|.+. .++++|+++.|||||||.|||||+++.++ +|+++||+||+||+|.+++|||+||+||+..+++.
T Consensus 84 ~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~ti-kDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~ 162 (1205)
T PTZ00427 84 YWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGII-KDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKE 162 (1205)
T ss_pred HHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHH-HHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHH
Confidence 45556666653 34566899999999999999999999655 99999999999999999999999999999999763
Q ss_pred -CC----------------CHHHHHHHHHHHHHHHHhhcC--cccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeee
Q 006917 87 -NC----------------TTQQICDKYYAIHKAVYNWFN--ISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQ 147 (625)
Q Consensus 87 -g~----------------~~~~~~~~~~~~~~~~~~~lg--i~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~ 147 (625)
|+ .|.++++++.+.+++++++|| +++|..++|+++.|.+.++++|.+|+++|+||++.+++
T Consensus 163 lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V 242 (1205)
T PTZ00427 163 NNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVM 242 (1205)
T ss_pred hCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceee
Confidence 32 367889999999999999999 56678999999999999999999999999999999999
Q ss_pred eeeCCCCccccccccc----------------------------------------------------------------
Q 006917 148 LYCDTCKRFLADRLVE---------------------------------------------------------------- 163 (625)
Q Consensus 148 ~y~~~~~~~l~~~~v~---------------------------------------------------------------- 163 (625)
+|||.|+|.|++.||.
T Consensus 243 ~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~ 322 (1205)
T PTZ00427 243 PYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVC 322 (1205)
T ss_pred ccCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeeccccccccccccccccccccc
Confidence 9999999999999771
Q ss_pred --c--------CCCC--Cccc----------------------------------------------------------c
Q 006917 164 --G--------SCPT--LGCN----------------------------------------------------------Y 173 (625)
Q Consensus 164 --g--------~cp~--~~c~----------------------------------------------------------~ 173 (625)
+ |.|+ ++|. |
T Consensus 323 ~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y 402 (1205)
T PTZ00427 323 YAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRY 402 (1205)
T ss_pred cCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccccccEEEEEeechhhCCCee
Confidence 0 1121 0000 0
Q ss_pred CCC--------------------------CCcc---------------c-----------------cccCCCCCC-C---
Q 006917 174 DSA--------------------------RGDQ---------------C-----------------EKCGKLLNP-T--- 191 (625)
Q Consensus 174 ~~~--------------------------~g~~---------------c-----------------e~cg~~~~~-~--- 191 (625)
..- .|.. | +..|++.+. .
T Consensus 403 ~pl~~~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~ 482 (1205)
T PTZ00427 403 KPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQ 482 (1205)
T ss_pred eCCccccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCcccC
Confidence 000 0000 0 011111100 0
Q ss_pred ---------------------------ccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhH-HH
Q 006917 192 ---------------------------ELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNA-IQ 243 (625)
Q Consensus 192 ---------------------------~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~-~~ 243 (625)
...+|+|||||+|++.+.++|||++++.+++.+.+..++..+.| ... .+
T Consensus 483 G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~P---~~~~~~ 559 (1205)
T PTZ00427 483 NLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIP---AHIKEK 559 (1205)
T ss_pred CCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEeC---chhhHh
Confidence 01469999999999999999999999999999888777766554 444 36
Q ss_pred HHHHHHhcCCCCcccccccCCCcccCCCCCC-------------------------------------------------
Q 006917 244 GTYAWLKDGLKPRCITRDLKWGVPVPHEKFK------------------------------------------------- 274 (625)
Q Consensus 244 ~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~------------------------------------------------- 274 (625)
++.+||.+ ++||||||||.||+|+|.|.++
T Consensus 560 r~~~wl~n-~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r 638 (1205)
T PTZ00427 560 KFHNWIKD-AKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKR 638 (1205)
T ss_pred HHHHHHhc-CccceeeeccccCccceeEEcCCCCeEeccCCHHHHHHHhccccchhhcccccChhhccCCccccccceee
Confidence 78999975 8999999999999999976321
Q ss_pred -CceeeeeccccchHHHhccCCC-----hhhHhhcCCCCCcceEEEEeecccchhH--hHHHHHhhcCCCCccCcceEEe
Q 006917 275 -DKVFYVWFDAPIGYISITSCYT-----PDWEEWWKNPENVALYQFMGKDNAPFHT--VMFPSTLLGTEENWTLMKTISV 346 (625)
Q Consensus 275 -~~viyvWfDa~~~yi~~~~~~~-----~~~~~~w~~p~d~~~i~~~GkD~~~fH~--~~~pa~l~a~~~~~~~~~~i~~ 346 (625)
.+|+||||||.+...+.. +|+ ++|+++|| +| +...|.||+++|- .+..+.++. | ..|++++++
T Consensus 639 ~~DVlD~WFdSg~~p~a~~-~~P~~~~~~~f~~~fP--aD---~i~eG~Dq~rgWf~s~l~~s~~l~-~--~~PfK~Vlv 709 (1205)
T PTZ00427 639 IPEVFDCWFESGSMPYAKV-HYPFSTEKEDFHKIFP--AD---FIAEGLDQTRGWFYTLLVISTLLF-D--KAPFKNLIC 709 (1205)
T ss_pred cCceEEEEEeCCCChHHHh-CCCcccchhhHhccCC--ce---EEEEecchhccHHHHHHHHHHHhc-C--CCCcceeEE
Confidence 138999999988776543 553 35777774 67 8999999997654 333332221 2 247799999
Q ss_pred eeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCC-CCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 006917 347 TEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRP-EVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFI 424 (625)
Q Consensus 347 hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~-~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~ 424 (625)
|||++ .+|+|||||+||+|+|.++++ +||+|+|||||++..+ .++|++|+++.+.+.. +.+.++++|.++++...+
T Consensus 710 HG~Vld~dG~KMSKSlGNvIDP~evI~-kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~-r~~l~klwN~~rF~~~~i 787 (1205)
T PTZ00427 710 NGLVLASDGKKMSKRLKNYPDPLYILD-KYGADSLRLYLINSVAVRAENLKFQEKGVNEVV-KSFILPFYHSFRFFSQEV 787 (1205)
T ss_pred ccEEEcCCCCCcccCCCCCCCHHHHHH-hcCCcHHHHHHHhcCCCCCcccccCHHHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 99998 699999999999999999998 8999999999998655 4799999999987655 466788888877776544
Q ss_pred hCCCCCCCCCCCCC--CCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHhHHHHhccccccccCC
Q 006917 425 AKPPGRGYGSIIPD--SPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISS-EGNAYLQESQFWKLYNED 501 (625)
Q Consensus 425 ~k~~~~~~~~~~p~--~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~-~~N~y~~~~~pw~l~k~~ 501 (625)
.........+..+. ........+|+|+++.++.+++.+.++|++|+++.|+..|++|+. .+|+|++..++......+
T Consensus 788 ~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~~~~~ 867 (1205)
T PTZ00427 788 TRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLG 867 (1205)
T ss_pred ccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHcchhhccCCC
Confidence 32000000011011 000123567999999999999999999999999999999999996 799999977641111112
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 502 QGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 502 ~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
.....++++++.++++.+++||+||||++||+||++|+.
T Consensus 868 ~~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~ 906 (1205)
T PTZ00427 868 EENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRR 906 (1205)
T ss_pred cHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhh
Confidence 234557889999999999999999999999999999963
No 29
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=8e-76 Score=609.66 Aligned_cols=316 Identities=49% Similarity=0.878 Sum_probs=290.1
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006917 26 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVY 105 (625)
Q Consensus 26 ~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 105 (625)
+++||+|+|||||.+||||+++.++ +|+++||+|++|++|.+++|+||||+||+.+|+++|++|+++|+.+.+.|++++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~-~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l 79 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVL-ADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLF 79 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHH-HHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999655 899999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccC
Q 006917 106 NWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCG 185 (625)
Q Consensus 106 ~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg 185 (625)
++|||++|.|++|+++.|...++++|++|.++|++|++.+.++||+.|++||+
T Consensus 80 ~~LgI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~--------------------------- 132 (319)
T cd00814 80 KWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--------------------------- 132 (319)
T ss_pred HHcCCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee---------------------------
Confidence 99999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCccccccc-CC
Q 006917 186 KLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDL-KW 264 (625)
Q Consensus 186 ~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~-~W 264 (625)
++++++||||+|++|++.+++++++.+. ..||++.++.+.+||+++++||||||++ .|
T Consensus 133 --------------------e~~~~~~~ff~l~~~~~~l~~~~~~~~~-~~~p~~~~~~~~~~l~~~l~d~~isR~~~~W 191 (319)
T cd00814 133 --------------------EWREEEHYFFRLSKFQDRLLEWLEKNPD-FIWPENARNEVLSWLKEGLKDLSITRDLFDW 191 (319)
T ss_pred --------------------EEEeeeeEEEEhHHHHHHHHHHHHhCCc-cCCCHHHHHHHHHHHhCCCcccCCCccCccc
Confidence 5689999999999999999999988763 3589999999999999999999999999 99
Q ss_pred CcccCCCCCCCceeeeeccccchHHHhccCCChhhH--hhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCccCcc
Q 006917 265 GVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWE--EWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMK 342 (625)
Q Consensus 265 Gi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~--~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~ 342 (625)
|||+|.+ +++++||||||+++|++++..+..... .||.. .+...+||+|+||++||+++|||+++++|. ++|+
T Consensus 192 Gipvp~~--~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~-~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~--~~~~ 266 (319)
T cd00814 192 GIPVPLD--PGKVIYVWFDALIGYISATGYYNEEWGNSWWWKD-GWPELVHFIGKDIIRFHAIYWPAMLLGAGL--PLPT 266 (319)
T ss_pred CeeCCCC--CCcEEEEehhhHHHHHHHcccccccccchhhhhc-CCCceEEEEeechhhhhHHHHHHHHHhCCC--CCCc
Confidence 9999986 799999999999999998754432111 23322 223459999999999999999999999884 5899
Q ss_pred eEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCc
Q 006917 343 TISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLF 396 (625)
Q Consensus 343 ~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~f 396 (625)
.+++|||++++|+|||||+||+|++.++++ .||+|++||||++..|.++|.||
T Consensus 267 ~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~-~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 267 RIVAHGYLTVEGKKMSKSRGNVVDPDDLLE-RYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred EeeeeeeEEECCeeecccCCcccCHHHHHH-HcCchHHHHHHHhcCCCCCCCCC
Confidence 999999999999999999999999999998 79999999999999999999987
No 30
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=9.5e-75 Score=614.07 Aligned_cols=326 Identities=20% Similarity=0.282 Sum_probs=293.6
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc---------CCC------
Q 006917 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE---------NCT------ 89 (625)
Q Consensus 25 ~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---------g~~------ 89 (625)
++|+||+|||||||.|||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+..|+++ +++
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~-~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALN-NTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHH-HHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHH
Confidence 36999999999999999999998 56699999999999999999999999999999999875 344
Q ss_pred -HHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCC
Q 006917 90 -TQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSC 166 (625)
Q Consensus 90 -~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~c 166 (625)
|+++++++++.+++++++|||++| .+++|+++.|.+.|+++|.+|+++|+||++.++++||+.|+++|++.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev---- 155 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV---- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh----
Confidence 456899999999999999999888 8999999999999999999999999999999999999999999997642
Q ss_pred CCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHH
Q 006917 167 PTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTY 246 (625)
Q Consensus 167 p~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 246 (625)
|++||++++.+.++||||+|+++++.|++++++++. ..+|++.++.+.
T Consensus 156 -------------------------------c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~-~~~P~~~~~~~~ 203 (382)
T cd00817 156 -------------------------------CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDI-KFVPERMEKRYE 203 (382)
T ss_pred -------------------------------cccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCc-EEEChHHHHHHH
Confidence 778999999999999999999999999999998542 136888899999
Q ss_pred HHHhcCCCCcccccccCCCcccCCCCC----------------------------------CCceeeeeccccchHHHhc
Q 006917 247 AWLKDGLKPRCITRDLKWGVPVPHEKF----------------------------------KDKVFYVWFDAPIGYISIT 292 (625)
Q Consensus 247 ~~l~~~l~d~~IsR~~~WGi~vP~~~~----------------------------------~~~viyvWfDa~~~yi~~~ 292 (625)
+||++ ++||||||++.||||||.|.+ +++|+||||||+++|++..
T Consensus 204 ~~l~~-l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~ 282 (382)
T cd00817 204 NWLEN-IRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTL 282 (382)
T ss_pred HHHhh-CccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHh
Confidence 99987 999999999999999998532 3799999999999999976
Q ss_pred cCCC---hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCCcccCch
Q 006917 293 SCYT---PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGN 368 (625)
Q Consensus 293 ~~~~---~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~ 368 (625)
+++ ++|++||| +| +|++|+||++||++++.++.+++... .+++.+++||+|+ .+|+|||||+||+|++.
T Consensus 283 -~~~~~~~~~~~~~p--~d---~~~~G~D~~~~h~~~~l~~~~~~~g~-~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~ 355 (382)
T cd00817 283 -GWPEETKDLKKFYP--TS---LLVTGHDIIFFWVARMIMRGLKLTGK-LPFKEVYLHGLVRDEDGRKMSKSLGNVIDPL 355 (382)
T ss_pred -CCCCcchhHhhcCC--CC---eeeeecCcCchHHHHHHHHHHHhhCC-CchHHeEeeeeEECCCCCCccccCCCCCCHH
Confidence 343 35888995 56 99999999999999999888776432 2358999999998 89999999999999999
Q ss_pred hhhhcCCCchhHHHHHHhcCCCCCCCCc
Q 006917 369 DVKDTNIPAEVWRYYLITNRPEVSDTLF 396 (625)
Q Consensus 369 d~l~~~~g~D~lR~~ll~~~~~~~d~~f 396 (625)
|+++ .||+|++|||+++.++.++|.+|
T Consensus 356 dll~-~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 356 DVID-GYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred HHHH-hcCcHHHHHHHHhCCCccCCCCC
Confidence 9998 79999999999998889999887
No 31
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=9.4e-71 Score=630.80 Aligned_cols=456 Identities=21% Similarity=0.281 Sum_probs=365.6
Q ss_pred cccCCCCCCC-CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCH
Q 006917 12 RNHRVAKLPV-PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTT 90 (625)
Q Consensus 12 ~~~~~~~~p~-~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~ 90 (625)
|.+...|.+. ..++++||+++||||||.|||||+++ ++.+|+++||+||+|++|++++|||+||+||+.+|++.|++|
T Consensus 18 W~~~~~f~~~~~~~~~~~i~~~pPy~nG~lHiGH~~~-~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~ 96 (805)
T PRK00390 18 WEENKTFKTTEDSSKKYYVLDMFPYPSGGLHMGHVRN-YTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHP 96 (805)
T ss_pred HHHCCCcccCccCCCCEEEEccCCCCCCCcchhhhHH-HHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCH
Confidence 4455555543 23347999999999999999999999 456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCC
Q 006917 91 QQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPT 168 (625)
Q Consensus 91 ~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~ 168 (625)
.++++++.+.|+++|++||+++| .+++|+++.|.+.++++|.+|+++|+||++..+++||+.|+++|++.+|+
T Consensus 97 ~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~----- 171 (805)
T PRK00390 97 AEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVI----- 171 (805)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhh-----
Confidence 99999999999999999999888 58999999999999999999999999999999999999999999988764
Q ss_pred CccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCC----------------
Q 006917 169 LGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMS---------------- 232 (625)
Q Consensus 169 ~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~---------------- 232 (625)
+++|++||.+++.+.++||||++++|+++|+++++...
T Consensus 172 --------------------------~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~ 225 (805)
T PRK00390 172 --------------------------DGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGR 225 (805)
T ss_pred --------------------------CCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhccc
Confidence 34577889999999999999999999998888754420
Q ss_pred --C----CC---------CCC----------------h------------------------------------------
Q 006917 233 --V----SG---------SWS----------------Q------------------------------------------ 239 (625)
Q Consensus 233 --~----~~---------~~~----------------~------------------------------------------ 239 (625)
. ++ .|. .
T Consensus 226 ~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g 305 (805)
T PRK00390 226 SEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGVFTG 305 (805)
T ss_pred cceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeeeecC
Confidence 0 00 000 0
Q ss_pred --------------------------------------------------------------------------------
Q 006917 240 -------------------------------------------------------------------------------- 239 (625)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (625)
T Consensus 306 ~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~ 385 (805)
T PRK00390 306 LYAIHPLTGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINSGEL 385 (805)
T ss_pred cEEECCCCCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEecccc
Confidence
Q ss_pred ------hHHHHHHHHHhc----------CCCCcccccccCCCcccCCCCC------------------------------
Q 006917 240 ------NAIQGTYAWLKD----------GLKPRCITRDLKWGVPVPHEKF------------------------------ 273 (625)
Q Consensus 240 ------~~~~~~~~~l~~----------~l~d~~IsR~~~WGi~vP~~~~------------------------------ 273 (625)
.+...+.+.|++ .++||||||||.||+|||.+.+
T Consensus 386 ~Gl~~~~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~ 465 (805)
T PRK00390 386 DGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPL 465 (805)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCceEEECCCccccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChh
Confidence 000111111111 2679999999999999996321
Q ss_pred --------------------CCceeeeeccccchHHHhccC-----C--ChhhHhhcCCCCCcceEEEEeecccchh---
Q 006917 274 --------------------KDKVFYVWFDAPIGYISITSC-----Y--TPDWEEWWKNPENVALYQFMGKDNAPFH--- 323 (625)
Q Consensus 274 --------------------~~~viyvWfDa~~~yi~~~~~-----~--~~~~~~~w~~p~d~~~i~~~GkD~~~fH--- 323 (625)
+.+||+|||||.+.|+..... . .+.|++|+| .| +++.|.||+..|
T Consensus 466 ~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P--~D---ly~~G~D~~i~hL~y 540 (805)
T PRK00390 466 AKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAPFDKEAANYWLP--VD---QYIGGIEHAVLHLLY 540 (805)
T ss_pred hhchhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccCcCChHHhhCcCC--Cc---EEeccHHHHHHHHHH
Confidence 357999999998655543211 1 235777774 67 999999986433
Q ss_pred HhHHHHHhhcCCC--CccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHH
Q 006917 324 TVMFPSTLLGTEE--NWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDF 401 (625)
Q Consensus 324 ~~~~pa~l~a~~~--~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~ 401 (625)
+-+|.+.|...|. ...|++.+++|||+ |||||+||+|+|.++++ .||+|++|||+++.+++++|++|+.+.+
T Consensus 541 ~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v-----KMSKS~GN~i~p~~~i~-~ygaD~lRl~l~~~~~~~~d~~~s~~~l 614 (805)
T PRK00390 541 ARFFTKVLRDLGLVSSDEPFKKLLTQGMV-----KMSKSKGNVVDPDDIIE-KYGADTARLFEMFAGPPEKDLEWSDSGV 614 (805)
T ss_pred HHHHHHHHHHhhcccCCcchhhheecCcE-----EeCCCCCCCCCHHHHHH-HcChHHHHHHHHhcCCccCCcccCHHHH
Confidence 3355555554441 12477999999999 99999999999999998 7999999999998789999999999998
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 006917 402 QAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSI 481 (625)
Q Consensus 402 ~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l 481 (625)
.+. .+++++++|+++...+... .++ ......|+|+++.++.+++.+.++|++|+|+.|+..+++|
T Consensus 615 ~~~--~~~l~kl~~~~~~~~~~~~-----~~~--------~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f 679 (805)
T PRK00390 615 EGA--YRFLQRVWRLVVDAKGEAG-----ALD--------VAALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMEL 679 (805)
T ss_pred HHH--HHHHHHHHHHHHHhhhccc-----ccC--------cccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 876 5678888888876322111 011 1123578999999999999999999999999999999999
Q ss_pred HHHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 482 SSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 482 ~~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
++..++|++ .....++.++++.+.+||+|||||+||+||+.|+.
T Consensus 680 ~n~lsk~~~---------------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~ 723 (805)
T PRK00390 680 VNALYKAED---------------EQDKAVLREALEILVRLLAPFAPHLAEELWEKLGH 723 (805)
T ss_pred HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC
Confidence 998888862 11234667788999999999999999999999974
No 32
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=1.1e-70 Score=630.97 Aligned_cols=460 Identities=19% Similarity=0.269 Sum_probs=368.8
Q ss_pred cccCCCCCC--CCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCC
Q 006917 12 RNHRVAKLP--VPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCT 89 (625)
Q Consensus 12 ~~~~~~~~p--~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~ 89 (625)
|.+...|.+ ..+++++||+++||||||.|||||+++ ++.+|+++||+||+|++|++++|||+||+||+.+|.+.|++
T Consensus 14 W~~~~~f~~~~~~~k~k~~v~~~pPy~nG~lHiGH~~~-~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~ 92 (842)
T TIGR00396 14 WKENKVFKFTDDSNKPKYYILDMFPYPSGALHMGHVRN-YTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIH 92 (842)
T ss_pred HHhcCCcccCCCCCCCCEEEEcCCCCCCCccccchhHH-HHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCC
Confidence 444444443 245677999999999999999999999 45699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCC
Q 006917 90 TQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCP 167 (625)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp 167 (625)
|.++++++.+.++++|++||+++| .+++|+++.|.+.++++|.+|+++|+||++.++++||+.|+++|++.+|.
T Consensus 93 p~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~---- 168 (842)
T TIGR00396 93 PAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVD---- 168 (842)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHh----
Confidence 999999999999999999999886 58999999999999999999999999999999999999999999998762
Q ss_pred CCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChh-------
Q 006917 168 TLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQN------- 240 (625)
Q Consensus 168 ~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~------- 240 (625)
.+++|++||.+++.+..+||||++++|+++|.+++++... ||.+
T Consensus 169 --------------------------~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~---wp~~v~~~q~~ 219 (842)
T TIGR00396 169 --------------------------SDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDH---WPESVKEMQRN 219 (842)
T ss_pred --------------------------hcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhcc---ccHHHHHHHHh
Confidence 1246888999999999999999999999988876443320 0000
Q ss_pred --------------------------------------------------------------------------------
Q 006917 241 -------------------------------------------------------------------------------- 240 (625)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (625)
T Consensus 220 wig~s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g 299 (842)
T TIGR00396 220 WIGKSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKG 299 (842)
T ss_pred cccccceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006917 241 -------------------------------------------------------------------------------- 240 (625)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (625)
T Consensus 300 ~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~~~ 379 (842)
T TIGR00396 300 VFTGIKAIHPLTGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVNSG 379 (842)
T ss_pred EecCCEEECCCCCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEecch
Confidence
Q ss_pred ---------HHHHHHHHHh----------cCCCCcccccccCCCcccCCCC-----------------------------
Q 006917 241 ---------AIQGTYAWLK----------DGLKPRCITRDLKWGVPVPHEK----------------------------- 272 (625)
Q Consensus 241 ---------~~~~~~~~l~----------~~l~d~~IsR~~~WGi~vP~~~----------------------------- 272 (625)
+...+.++|. -.|+||||||||.||+|||.+.
T Consensus 380 ~~~Gl~~~~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~ 459 (842)
T TIGR00396 380 EFNGLNSSEAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGN 459 (842)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCCceEEeecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCC
Confidence 0001111111 1477999999999999999831
Q ss_pred ----------------------CCCceeeeeccccchHHHhcc----CC---ChhhHhhcCCCCCcceEEEEeecccchh
Q 006917 273 ----------------------FKDKVFYVWFDAPIGYISITS----CY---TPDWEEWWKNPENVALYQFMGKDNAPFH 323 (625)
Q Consensus 273 ----------------------~~~~viyvWfDa~~~yi~~~~----~~---~~~~~~~w~~p~d~~~i~~~GkD~~~fH 323 (625)
.+.+||+|||||.+.|+.... .+ .+.+++|+ |.| +++.|.||+..|
T Consensus 460 ~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~--PvD---~yi~G~dhailH 534 (842)
T TIGR00396 460 SPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWL--PVD---LYIGGAEHAILH 534 (842)
T ss_pred CchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHHhccC--CCc---EeeccHHHHHHH
Confidence 134789999999876664221 11 13456566 578 999999986443
Q ss_pred ---HhHHHHHhhcCCC--CccCcceEEeeeeeec-----CCc---------------------------cccccCCcccC
Q 006917 324 ---TVMFPSTLLGTEE--NWTLMKTISVTEYLNY-----EAG---------------------------KFSKSKGVGVF 366 (625)
Q Consensus 324 ---~~~~pa~l~a~~~--~~~~~~~i~~hg~l~~-----~G~---------------------------KMSKS~GN~I~ 366 (625)
+-+|...|...+. ...|++++++|||+.- +|+ |||||+||+|+
T Consensus 535 LlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~ 614 (842)
T TIGR00396 535 LLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGID 614 (842)
T ss_pred HHHHHHHHHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCC
Confidence 3446655554442 1247899999999974 888 99999999999
Q ss_pred chhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcH
Q 006917 367 GNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHP 446 (625)
Q Consensus 367 ~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~ 446 (625)
|.++++ .||+|++|||+++.+++.+|++|+.+.+... ..++++++|+++++.+.+.. ++ .++. .....
T Consensus 615 p~~ii~-~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~--~~~l~kl~~~~~~~~~~~~~-----~~-~~~~---~~l~~ 682 (842)
T TIGR00396 615 PQEIVK-KHGADALRLYIMFMGPIAASLEWNDSGLEGA--RRFLDRVWNLFYNILGELDG-----KT-YLTP---TILEE 682 (842)
T ss_pred HHHHHH-HcCchHHHHHHHhcCCcCCCCccCHHHHHHH--HHHHHHHHHHHHHHHhhhcc-----cc-cCCc---ccCCH
Confidence 999998 7999999999998788899999999999875 67889999999886554432 11 0110 12346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhc
Q 006917 447 STKMLAEKISNHIDQYIEAMEKVK-LKQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEP 525 (625)
Q Consensus 447 ~d~~l~~~l~~~~~~v~~a~~~~~-~~~a~~~i~~l~~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P 525 (625)
.|+|+++.++.+++.+.++|++|+ |+.|+..+++|++...+|.. . .++.+++..+.+||+|
T Consensus 683 ~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~~~---------------~---~~l~~~l~~ll~lLaP 744 (842)
T TIGR00396 683 AQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLNALYKAKK---------------D---ALYLEYLKGFLTVLSP 744 (842)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhh---------------H---HHHHHHHHHHHHHHhh
Confidence 799999999999999999999988 99999999999976554311 0 2456778899999999
Q ss_pred hhhHHHHHHHHHcCC
Q 006917 526 FMPSFSLEVLKQLNV 540 (625)
Q Consensus 526 ~~P~~ae~i~~~Lg~ 540 (625)
|+||+||+||+.||.
T Consensus 745 f~PhiaEElW~~l~~ 759 (842)
T TIGR00396 745 FAPHLAEELWEKLGS 759 (842)
T ss_pred hhhHHHHHHHHHhCC
Confidence 999999999999984
No 33
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.6e-69 Score=619.88 Aligned_cols=449 Identities=18% Similarity=0.281 Sum_probs=352.3
Q ss_pred CCCcEEEEcCCCCCCCc-ccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHH
Q 006917 23 GKRNILITSALPYVNNV-PHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIH 101 (625)
Q Consensus 23 ~~~~~~i~~~~Py~ng~-lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 101 (625)
++++|||+++||||||. |||||+++. +.+|+++||+||+||+|++++|||+||+||+.+|.+.|..|+++++++++.|
T Consensus 108 ~k~k~~v~~~~PYpnG~~lHiGH~~~y-~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~ 186 (963)
T PLN02563 108 SKPKFYVLDMFPYPSGAGLHVGHPEGY-TATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARF 186 (963)
T ss_pred CCCCEEEEeCCCCCCCcccchhhHHHH-HHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHH
Confidence 56779999999999996 999999995 5699999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCc
Q 006917 102 KAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGD 179 (625)
Q Consensus 102 ~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~ 179 (625)
+++|++||+++| ++++|+++.|.+.+|++|.+|+++|+||++..+++||+.|+++|++.+
T Consensus 187 ~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~E------------------ 248 (963)
T PLN02563 187 RSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEE------------------ 248 (963)
T ss_pred HHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHH------------------
Confidence 999999999888 689999999999999999999999999999999999999999998765
Q ss_pred cccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCC---------------------------
Q 006917 180 QCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMS--------------------------- 232 (625)
Q Consensus 180 ~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~--------------------------- 232 (625)
+.+++|++||.+++.++..||||++++|+++|+++++...
T Consensus 249 -------------v~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nwiG~s~g~~i~F~~~~ 315 (963)
T PLN02563 249 -------------VVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSVLD 315 (963)
T ss_pred -------------hhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHhccccceEEEEEEecC
Confidence 4556899999999999999999999999999998863211
Q ss_pred -------C-CCCCC----------------hh--H------------HHH------------------------------
Q 006917 233 -------V-SGSWS----------------QN--A------------IQG------------------------------ 244 (625)
Q Consensus 233 -------~-~~~~~----------------~~--~------------~~~------------------------------ 244 (625)
. ...|. .. + ...
T Consensus 316 ~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~g~~~g~~~~~ 395 (963)
T PLN02563 316 GEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTELQKEKTGVFTGSYAIN 395 (963)
T ss_pred ccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhhhccceecccccCcEEec
Confidence 0 00000 00 0 000
Q ss_pred --------------------------------------------------------------------------------
Q 006917 245 -------------------------------------------------------------------------------- 244 (625)
Q Consensus 245 -------------------------------------------------------------------------------- 244 (625)
T Consensus 396 P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~~ 475 (963)
T PLN02563 396 PATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDIN 475 (963)
T ss_pred cCCCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccccCceeEecCCCcccccC
Confidence
Q ss_pred ----------HHHHHhc----------CCCCcccccccCCCcccCCCCC-------------------------------
Q 006917 245 ----------TYAWLKD----------GLKPRCITRDLKWGVPVPHEKF------------------------------- 273 (625)
Q Consensus 245 ----------~~~~l~~----------~l~d~~IsR~~~WGi~vP~~~~------------------------------- 273 (625)
+.++|.+ .++||||||||+||+|||.+.+
T Consensus 476 Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~ 555 (963)
T PLN02563 476 GLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGE 555 (963)
T ss_pred CcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCC
Confidence 0000100 1789999999999999998410
Q ss_pred -----------------------CCceeeeeccccchHHHhccC------CChhhHhhcCCCCCcceEEEEeecccchh-
Q 006917 274 -----------------------KDKVFYVWFDAPIGYISITSC------YTPDWEEWWKNPENVALYQFMGKDNAPFH- 323 (625)
Q Consensus 274 -----------------------~~~viyvWfDa~~~yi~~~~~------~~~~~~~~w~~p~d~~~i~~~GkD~~~fH- 323 (625)
+.+||+|||+|.+.|+...-. +..+..++|. |.| +++.|.||.-.|
T Consensus 556 ~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w~-PvD---~yigG~dhailHL 631 (963)
T PLN02563 556 PPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWM-PVD---LYVGGAEHAVLHL 631 (963)
T ss_pred CchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCcC-CCc---EeeccHHHHhhHh
Confidence 236899999998777754310 1112223443 578 999999996444
Q ss_pred --HhHHHHHhhcCCC--CccCcceEEeeeeee----------cCCc----------------------------------
Q 006917 324 --TVMFPSTLLGTEE--NWTLMKTISVTEYLN----------YEAG---------------------------------- 355 (625)
Q Consensus 324 --~~~~pa~l~a~~~--~~~~~~~i~~hg~l~----------~~G~---------------------------------- 355 (625)
+-+|...+..+|. ...|+++++.|||++ .+|+
T Consensus 632 lY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (963)
T PLN02563 632 LYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKD 711 (963)
T ss_pred HHHHHHHHHHHHhhccCCcccHHHHhccceeecCccccceecCCCcCccccccccccccccccccccccccccccccccc
Confidence 4445555544441 124789999999986 5566
Q ss_pred -----------cccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 006917 356 -----------KFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFI 424 (625)
Q Consensus 356 -----------KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~ 424 (625)
|||||+||+|+|.++++ +||+|+||||++..+|..+|.+|+.+.+... ..++++++|++......
T Consensus 712 ~~~~~~~~~~eKMSKSKGNvVdP~eiI~-kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~--~rfL~rlwn~~~~~~~~- 787 (963)
T PLN02563 712 DPSIRLIARAHKMSKSRGNVVNPDDVVS-EYGADSLRLYEMFMGPLRDSKTWSTSGVEGV--HRFLGRTWRLVVGAPLP- 787 (963)
T ss_pred CCcccccccccccccccCCcCCHHHHHH-HcCcHHHHHHHHhCCCcccccccCHHHHHHH--HHHHHHHHHHHHHhhhc-
Confidence 99999999999999998 7999999999999889989999998887664 45666677765432110
Q ss_pred hCCCCCCCC-CCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhccccccccCCHh
Q 006917 425 AKPPGRGYG-SIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQG 503 (625)
Q Consensus 425 ~k~~~~~~~-~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~pw~l~k~~~~ 503 (625)
.. .+. +.++ .....|+|+++.++.+++.+.++|++|+|+.|+..+++|++..++ |. .
T Consensus 788 ~~----~~~~~~~~-----~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~-------~~-----~- 845 (963)
T PLN02563 788 DG----SFRDGTVV-----TDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYK-------WD-----K- 845 (963)
T ss_pred cc----ccCccccc-----cCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhC-------ch-----H-
Confidence 00 011 1111 112357889999999999999999999999999999999976542 21 0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 504 SCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 504 ~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
...+++..+++||+|||||+||+||++||.
T Consensus 846 -------~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~ 875 (963)
T PLN02563 846 -------VPREAIEPFVLLLSPYAPHLAEELWFRLGH 875 (963)
T ss_pred -------HHHHHHHHHHHHHHhhhhhHHHHHHHHcCC
Confidence 124578889999999999999999999985
No 34
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-68 Score=619.17 Aligned_cols=461 Identities=19% Similarity=0.251 Sum_probs=366.3
Q ss_pred ccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc---------------CC---------CHHHHHH
Q 006917 40 PHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE---------------NC---------TTQQICD 95 (625)
Q Consensus 40 lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---------------g~---------~~~~~~~ 95 (625)
|||||+++.+ .+|+++||+||+|++|+|++|||+||+||+..|++. |+ .|.++++
T Consensus 1 lHiGH~~~~t-~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~ 79 (897)
T PRK12300 1 LHVGHGRTYT-IGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVE 79 (897)
T ss_pred CccchhHHHH-HHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHH
Confidence 7999999855 599999999999999999999999999999998642 33 5678899
Q ss_pred HHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCcccccccccc---------
Q 006917 96 KYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEG--------- 164 (625)
Q Consensus 96 ~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g--------- 164 (625)
++...++++|++||+++| +.+.|+++.|.+.+++.|.+|+++|+||++..+++|||.|++.+++.++..
T Consensus 80 ~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~~ 159 (897)
T PRK12300 80 YFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEY 159 (897)
T ss_pred HhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcceE
Confidence 999999999999999877 567799999999999999999999999999999999999999999987741
Q ss_pred -----------------CCCC--Ccc---------c----------------------c--------------C------
Q 006917 165 -----------------SCPT--LGC---------N----------------------Y--------------D------ 174 (625)
Q Consensus 165 -----------------~cp~--~~c---------~----------------------~--------------~------ 174 (625)
+.|+ .|| . + +
T Consensus 160 ~~ikf~~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~ 239 (897)
T PRK12300 160 TLIKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIGKKV 239 (897)
T ss_pred EEEEEeCCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcCCEE
Confidence 1111 000 0 0 0
Q ss_pred ------------------CC----------------------CCc------------cc---------------------
Q 006917 175 ------------------SA----------------------RGD------------QC--------------------- 181 (625)
Q Consensus 175 ------------------~~----------------------~g~------------~c--------------------- 181 (625)
.. .|. .|
T Consensus 240 ~~Pl~~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~ 319 (897)
T PRK12300 240 KNPVTGKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKS 319 (897)
T ss_pred ECCCCCCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCC
Confidence 00 010 01
Q ss_pred --c---------------ccCCCCCC-C----------------------------cc-CCCccccCCCccEEEe-ccce
Q 006917 182 --E---------------KCGKLLNP-T----------------------------EL-KDPRCKVCQATPKIRD-TDHL 213 (625)
Q Consensus 182 --e---------------~cg~~~~~-~----------------------------~l-~~~~~~~~g~~~~~~~-~~~~ 213 (625)
+ .-|++.+. . ++ ..|+|+|||++++++. ++||
T Consensus 320 ~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~~~~QW 399 (897)
T PRK12300 320 QEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKVVKDQW 399 (897)
T ss_pred ccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEecCCce
Confidence 0 12222211 0 11 2378999999999976 6999
Q ss_pred eeecc--chHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCC------CCCCceeeeecccc
Q 006917 214 FLELP--LIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHE------KFKDKVFYVWFDAP 285 (625)
Q Consensus 214 f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~------~~~~~viyvWfDa~ 285 (625)
|++++ .+++.++++++++.+ +|+..++++.+||. +++|||||||+.||+|+|++ .+.+.++|+|+++.
T Consensus 400 Fi~~~~~~~k~~~~~~~~~~~~---~P~~~~~~~~~~l~-~l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~~~i 475 (897)
T PRK12300 400 FIDYSDPEWKELAHKALDNMEI---IPEEYRKEFENTID-WLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTI 475 (897)
T ss_pred EEEcCcHHHHHHHHHHHccCEE---ECHHHHHHHHHHHh-hhhhcceeeccccCCcCCccCCEEeeeccccchhhhHHHH
Confidence 99997 799999999988765 46677788999998 59999999999999999963 13467999999988
Q ss_pred chHHHhcc------------------C----------C--------ChhhHhhcCCCCCcceEEEEeecccchhHhHHHH
Q 006917 286 IGYISITS------------------C----------Y--------TPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPS 329 (625)
Q Consensus 286 ~~yi~~~~------------------~----------~--------~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa 329 (625)
..++.... + + .++|+.||| .| +|++|+||++||..+|.
T Consensus 476 ~~~l~~~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~P--~D---~~~~GkDii~~Hl~~~~- 549 (897)
T PRK12300 476 AHKIREYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYP--VD---WRHSGKDLIPNHLTFFI- 549 (897)
T ss_pred HHHHHHcCCChHHCChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccCC--ce---EEEeeeccCccHHHHHH-
Confidence 87765310 0 0 124666774 57 99999999999999994
Q ss_pred HhhcCCCC-ccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHH
Q 006917 330 TLLGTEEN-WTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTE 408 (625)
Q Consensus 330 ~l~a~~~~-~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~ 408 (625)
++..+..+ -+.|+++++||||+.+|+|||||+||+|+|.++++ .||+|++||||++.++.++|++|+++.+... .+
T Consensus 550 ~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~-~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~--~~ 626 (897)
T PRK12300 550 FNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIE-EYGADVVRLYLTSSAELLQDADWREKEVESV--RR 626 (897)
T ss_pred HHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHH-HcChHHHHHHHHhCCCCCCCCccCHHHHHHH--HH
Confidence 44443221 14569999999999999999999999999999998 7999999999999889999999999987765 44
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHhH
Q 006917 409 LLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGM-SISSEGNA 487 (625)
Q Consensus 409 l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~-~l~~~~N~ 487 (625)
+++++.|+++++... . +. ......|+|+++.++.+++.+.++|++|+++.|+..++ .+.+.+|+
T Consensus 627 ~l~r~~~~~~~~~~~-----------~-~~---~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~ 691 (897)
T PRK12300 627 QLERFYELAKELIEI-----------G-GE---EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRW 691 (897)
T ss_pred HHHHHHHHHHHHhcC-----------C-Cc---cccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 556666655543221 0 11 12345789999999999999999999999999998886 67788999
Q ss_pred HHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCC
Q 006917 488 YLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVP 541 (625)
Q Consensus 488 y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~ 541 (625)
|++..+| .+..++.++++.+++||+|||||+||+||+.||.+
T Consensus 692 Yi~~~k~------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~ 733 (897)
T PRK12300 692 YLRRVGE------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE 733 (897)
T ss_pred HHHhcch------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 9987653 35677888999999999999999999999999853
No 35
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=2.3e-67 Score=548.69 Aligned_cols=303 Identities=24% Similarity=0.369 Sum_probs=271.3
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc-CCCH-------------
Q 006917 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE-NCTT------------- 90 (625)
Q Consensus 25 ~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-g~~~------------- 90 (625)
++|+|.+|||||||++||||+++.+ .+|+++||+|++|++|.+++|+|+||+||+.+|++. |+++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~-~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~ 79 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKI-LKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFN 79 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHH-HHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHH
Confidence 4699999999999999999999965 599999999999999999999999999999999886 7654
Q ss_pred ---HHHHHHHHHHHHHHHhhcCc--ccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccC
Q 006917 91 ---QQICDKYYAIHKAVYNWFNI--SFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGS 165 (625)
Q Consensus 91 ---~~~~~~~~~~~~~~~~~lgi--~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~ 165 (625)
+++++++++.|++++++||| ++|.+++|++++|.+.++++|.+|+++|+||++.++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~---------------- 143 (338)
T cd00818 80 AKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW---------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee----------------
Confidence 79999999999999999999 566789999999999999999999999999999999887
Q ss_pred CCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHH
Q 006917 166 CPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGT 245 (625)
Q Consensus 166 cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (625)
+++.++++||||+++++++.+++++++..+ +|++.++.+
T Consensus 144 --------------------------------------~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~---~P~~~~~~~ 182 (338)
T cd00818 144 --------------------------------------PLIYRATPQWFIRVTKIKDRLLEANDKVNW---IPEWVKNRF 182 (338)
T ss_pred --------------------------------------EEEEEecCeEEEEcHHHHHHHHHHHhcCcE---ECHHHHHHH
Confidence 246789999999999999999999987542 478888899
Q ss_pred HHHHhcCCCCcccccccCCCcccCCCCCC----------CceeeeeccccchHHHhccCCC---hhhHhhcCCCCCcceE
Q 006917 246 YAWLKDGLKPRCITRDLKWGVPVPHEKFK----------DKVFYVWFDAPIGYISITSCYT---PDWEEWWKNPENVALY 312 (625)
Q Consensus 246 ~~~l~~~l~d~~IsR~~~WGi~vP~~~~~----------~~viyvWfDa~~~yi~~~~~~~---~~~~~~w~~p~d~~~i 312 (625)
.+|++ +++||||||++.||+|+|.|.++ ++|+||||||+++|++.. +++ .+|++||| .| +
T Consensus 183 ~~~l~-~l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~-~~~~~~~~~~~~~p--~d---~ 255 (338)
T cd00818 183 GNWLE-NRRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQL-HYPFENEDFEELFP--AD---F 255 (338)
T ss_pred HHHHh-cchhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHc-CCCCcchhhhccCC--Ce---E
Confidence 99996 49999999999999999986543 789999999999999876 443 35888996 45 8
Q ss_pred EEEeecccc--hhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCC
Q 006917 313 QFMGKDNAP--FHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRP 389 (625)
Q Consensus 313 ~~~GkD~~~--fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~ 389 (625)
+++|+||++ ||+++||++++. +. .+|+.+++||+++ .+|+|||||+||+|++.|+++ .||+|++||||++.++
T Consensus 256 ~~~GkDii~~wf~~~~~~~~~~~-~~--~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~-~~~~D~~R~~l~~~~~ 331 (338)
T cd00818 256 ILEGSDQTRGWFYSLLLLSTALF-GK--APYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVD-KYGADALRLWVASSDV 331 (338)
T ss_pred EeecchHHhHHHHHHHHHHHHhc-CC--CccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHH-HcCcHHHHHHHHhCCC
Confidence 999999985 999999998743 33 4679999999987 589999999999999999998 7999999999999888
Q ss_pred CCCCCCc
Q 006917 390 EVSDTLF 396 (625)
Q Consensus 390 ~~~d~~f 396 (625)
.++|++|
T Consensus 332 ~~~d~~~ 338 (338)
T cd00818 332 YAEDLRF 338 (338)
T ss_pred ccCCCCC
Confidence 9999876
No 36
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.2e-65 Score=596.28 Aligned_cols=479 Identities=18% Similarity=0.200 Sum_probs=351.0
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc-------CCC-------
Q 006917 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE-------NCT------- 89 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-------g~~------- 89 (625)
.++|+|+.||||+||.|||||++|.+ .+|+++||+||+|++|+|++|||+||+||+..|++. |..
T Consensus 44 ~~kf~i~~ppPY~NG~lHiGHa~t~t-~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~ 122 (1084)
T PLN02959 44 GEKFFGNFPYPYMNGLLHLGHAFSLS-KLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEED 122 (1084)
T ss_pred CCcEEEeCCCCCCCCCcchhhHHHHH-HHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCccccccc
Confidence 36799999999999999999999965 599999999999999999999999999999998652 211
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHHHhhcC
Q 006917 90 ------------------------------------------------------------TQQICDKYYAIHKAVYNWFN 109 (625)
Q Consensus 90 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~lg 109 (625)
|..+++.+...++++|++||
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG 202 (1084)
T PLN02959 123 EDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFG 202 (1084)
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhC
Confidence 22244444577899999999
Q ss_pred cccc--cccCCCC--hhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccc----------------------
Q 006917 110 ISFD--EFGRTST--PQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVE---------------------- 163 (625)
Q Consensus 110 i~~D--~~~~t~~--~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~---------------------- 163 (625)
++.| +-+.|++ +.|..+|++.|.+|+++|+||++.++++|||.|++.++|++++
T Consensus 203 ~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~ 282 (1084)
T PLN02959 203 LGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPFP 282 (1084)
T ss_pred ceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcch
Confidence 9877 5567887 9999999999999999999999999999999999999997542
Q ss_pred -------c---------CCCC--------------------C--c--------------c--------------------
Q 006917 164 -------G---------SCPT--------------------L--G--------------C-------------------- 171 (625)
Q Consensus 164 -------g---------~cp~--------------------~--~--------------c-------------------- 171 (625)
+ +.|+ . + +
T Consensus 283 ~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~ 362 (1084)
T PLN02959 283 GKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYD 362 (1084)
T ss_pred hhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHH
Confidence 1 1111 0 0 0
Q ss_pred -----------ccCC-------------------------------------------CCCc--------------cccc
Q 006917 172 -----------NYDS-------------------------------------------ARGD--------------QCEK 183 (625)
Q Consensus 172 -----------~~~~-------------------------------------------~~g~--------------~ce~ 183 (625)
+.+. .+|- ..+.
T Consensus 363 L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g 442 (1084)
T PLN02959 363 LIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPE 442 (1084)
T ss_pred hCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCC
Confidence 0000 0010 0001
Q ss_pred c-------------------------------------CCCCCCC---------------------------ccCCCccc
Q 006917 184 C-------------------------------------GKLLNPT---------------------------ELKDPRCK 199 (625)
Q Consensus 184 c-------------------------------------g~~~~~~---------------------------~l~~~~~~ 199 (625)
+ |.+.... +-..|+|+
T Consensus 443 ~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep~~pv~~ 522 (1084)
T PLN02959 443 FGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEPEKKVMS 522 (1084)
T ss_pred CCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEcCCCeEE
Confidence 1 1000000 00247999
Q ss_pred cCCCccEEEeccceeeecc--chHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCC-----
Q 006917 200 VCQATPKIRDTDHLFLELP--LIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEK----- 272 (625)
Q Consensus 200 ~~g~~~~~~~~~~~f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~----- 272 (625)
|||+++++..++|||++++ .+++.+++.++++.+. |+..++.+.+||. .++|||||||+.||+|+|++.
T Consensus 523 R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~~---P~~~~~~~~~wl~-~l~DWciSRQr~wGtpIPWd~~~~ie 598 (1084)
T PLN02959 523 RSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNLY---SDETRHGFEHTLG-WLNQWACSRSFGLGTRIPWDEQFLIE 598 (1084)
T ss_pred CCCCEEEEeecCCeeEECCchHHHHHHHHHHcccEEE---CHHHHHHHHHHHh-CCCceeecccccCCCcCCcccceeec
Confidence 9999999999999999997 7999999999887653 6667777889996 599999999999999999410
Q ss_pred -----------------------------------CCCceeeeeccccchHHHhccCC--------ChhhHhhcCCCCCc
Q 006917 273 -----------------------------------FKDKVFYVWFDAPIGYISITSCY--------TPDWEEWWKNPENV 309 (625)
Q Consensus 273 -----------------------------------~~~~viyvWfDa~~~yi~~~~~~--------~~~~~~~w~~p~d~ 309 (625)
...+|+++||++.....+. ++ ..+|+.|+| .|
T Consensus 599 slsdstiy~a~yti~~~~~~~~~~g~~~~~i~~~~~~~dV~D~wF~Sg~~p~~t--~~p~~~l~~~r~ef~~~yP--~D- 673 (1084)
T PLN02959 599 SLSDSTIYMAYYTVAHLLQGGDMYGKDKSSIKPEQMTDEVWDFVFCGGPLPKSS--DIPAELLEKMKQEFEYWYP--FD- 673 (1084)
T ss_pred cCCCCceeechhhHHHHHhhhhccCCccccCChhhcCccceeEeecCCCccccc--CCCHHHHhhhhHHHHhhCC--Ce-
Confidence 0245899999986533221 22 245777774 67
Q ss_pred ceEEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCC
Q 006917 310 ALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRP 389 (625)
Q Consensus 310 ~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~ 389 (625)
+++.|+||+++|..+.-.+..++...-+.|+.+++||||+.+|+|||||+||+|+|.++++ .||+|++|||+++.++
T Consensus 674 --l~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~-kyGADalRl~la~~~~ 750 (1084)
T PLN02959 674 --LRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIE-EFSADATRFALADAGD 750 (1084)
T ss_pred --EEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHH-HhCchHHHHHHhhcCC
Confidence 9999999999996543332223222224668999999999999999999999999999998 7999999999998778
Q ss_pred CCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 006917 390 EVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKV 469 (625)
Q Consensus 390 ~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~ 469 (625)
..+|.+|+++.+.+. ...+.|.+..+...+.. ...+. +. ......|+|+++.++.+++.+.++|++|
T Consensus 751 ~~~D~nF~~k~~n~~-----~~~l~n~~~~~~~~~~~--~~~~~---~~---~~~~~~D~wils~l~~~i~~v~~a~e~y 817 (1084)
T PLN02959 751 GVDDANFVFETANAA-----ILRLTKEIAWMEEVLAA--ESSLR---TG---PPSTYADRVFENEINIAIAETEKNYEAM 817 (1084)
T ss_pred ccCCCCccHHHHHHH-----HHHHHHHHHHHHHhhhh--hcccC---Cc---ccCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 889999999865432 22333433222222211 00111 10 1134679999999999999999999999
Q ss_pred cHHHHHHHHH-HHHHHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHc
Q 006917 470 KLKQGLRIGM-SISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQL 538 (625)
Q Consensus 470 ~~~~a~~~i~-~l~~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L 538 (625)
+|+.|++..+ +|...-.+|.... ++.. ....++..++..+.+||+|||||+||+||+.|
T Consensus 818 ~f~~A~~~~~Yel~~~k~~yr~~~-------~~~~---~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l 877 (1084)
T PLN02959 818 MFREALKSGFYDLQAARDEYRLSC-------GSGG---MNRDLVWRFMDVQTRLITPICPHYAEHVWREI 877 (1084)
T ss_pred cHHHHHHHHHHHHHHhHHHHhhcc-------ccch---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 9999999743 2332222332111 1111 23456778889999999999999999999998
No 37
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.1e-64 Score=525.62 Aligned_cols=294 Identities=28% Similarity=0.441 Sum_probs=268.7
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCC-------------CHHH
Q 006917 26 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENC-------------TTQQ 92 (625)
Q Consensus 26 ~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~-------------~~~~ 92 (625)
+|+|++|||||||.+||||+++ ++.+|+++||+|++|++|.+++|+|+||+||+.+|++.+. +|++
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~-~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALT-HIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKE 79 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHH-HHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHH
Confidence 4899999999999999999998 5669999999999999999999999999999999999988 9999
Q ss_pred HHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCc
Q 006917 93 ICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLG 170 (625)
Q Consensus 93 ~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~ 170 (625)
+++++.+.|++++++|||++| .+++|+++.|...++++|.+|+++|+||++.+++
T Consensus 80 ~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v----------------------- 136 (312)
T cd00668 80 FVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV----------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee-----------------------
Confidence 999999999999999999999 8999999999999999999999999999876543
Q ss_pred cccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHh
Q 006917 171 CNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLK 250 (625)
Q Consensus 171 c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 250 (625)
+.++|||++++++++++++++++++ .+|++.++.+.+||.
T Consensus 137 -------------------------------------~~~~~~f~~~~~l~~~~~~~~~~~~---~~p~~~~~~~~~~l~ 176 (312)
T cd00668 137 -------------------------------------RITEQWFFDMPKFKEKLLKALRRGK---IVPEHVKNRMEAWLE 176 (312)
T ss_pred -------------------------------------EeeeeEEEEcHHHHHHHHHHHhcCC---cCChHHHHHHHHHHh
Confidence 4677999999999999999998875 367778888999999
Q ss_pred cCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCC--hhhHhhcCCCCCcceEEEEeecccchhHhHHH
Q 006917 251 DGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYT--PDWEEWWKNPENVALYQFMGKDNAPFHTVMFP 328 (625)
Q Consensus 251 ~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~--~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~p 328 (625)
+.+ ||||||+++||+|+| +++|||||||+++|++.+.... ..|++||+ .| +|++|+||++||+.+|+
T Consensus 177 ~~~-d~~isR~~~WG~~~P-----~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~--~d---i~~~G~D~~~~h~~~~~ 245 (312)
T cd00668 177 SLL-DWAISRQRYWGTPLP-----EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYP--AD---WHLIGKDILRGWANFWI 245 (312)
T ss_pred CCC-CeEEeccCCCCCcCC-----cccccchhhccHHHHHHcCCCccchhhhhcCC--ce---EEEEecchhhhHHHHHH
Confidence 877 999999999999999 6799999999999999874322 35788885 46 99999999999999999
Q ss_pred HHhhcCCCCccCcceEEeeeeeecCC-ccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCc
Q 006917 329 STLLGTEENWTLMKTISVTEYLNYEA-GKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLF 396 (625)
Q Consensus 329 a~l~a~~~~~~~~~~i~~hg~l~~~G-~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~f 396 (625)
+++.+++.. .+|+.+++|||++.+| +|||||+||+|++.|+++ .||+|++||||++.+++++|.+|
T Consensus 246 ~~~~~~~~~-~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~-~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 246 TMLVALFGE-IPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVE-KYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred HHHHHhcCC-CCcceeEECcEEEcCCCccccccCCCcCCHHHHHH-HcCcHHHHHHHHhcCCccCCCCC
Confidence 999998753 4788999999999877 999999999999999998 69999999999998889999886
No 38
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-63 Score=553.94 Aligned_cols=460 Identities=20% Similarity=0.293 Sum_probs=370.3
Q ss_pred ccccCCCCCCCC--CC-CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcC
Q 006917 11 ERNHRVAKLPVP--GK-RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEEN 87 (625)
Q Consensus 11 ~~~~~~~~~p~~--~~-~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 87 (625)
.|++...|.+.. +. ++|||+.+.|||||.||+||+||.+ .+||++||+||+||+|++.+|||..|+|++..|.+.|
T Consensus 17 ~W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yt-i~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~ 95 (814)
T COG0495 17 RWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYT-IGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIG 95 (814)
T ss_pred HHHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCcccccc-HHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhC
Confidence 366677777643 22 5899999999999999999999955 5999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccC
Q 006917 88 CTTQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGS 165 (625)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~ 165 (625)
..|..+++.+++.++++|+.||.++| +-+.|+|++|.+.+|++|.+|+++|+||+++.++.|||.|++.|++.+|
T Consensus 96 ~~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv--- 172 (814)
T COG0495 96 TDPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQV--- 172 (814)
T ss_pred CChHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCcccccee---
Confidence 99999999999999999999999888 5677999999999999999999999999999999999999999887654
Q ss_pred CCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHH
Q 006917 166 CPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGT 245 (625)
Q Consensus 166 cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (625)
.++.|||||.+|+.+.-.||||++++|.+.|++-+..... .||..++.+.
T Consensus 173 ----------------------------~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~--~wPE~Vk~mq 222 (814)
T COG0495 173 ----------------------------IDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLAT--LWPETVKGMQ 222 (814)
T ss_pred ----------------------------ecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhcc--CCchhHHHHH
Confidence 4567899999999999999999999999999987776542 3888888888
Q ss_pred HHHHh---------------------------------------------------------------------------
Q 006917 246 YAWLK--------------------------------------------------------------------------- 250 (625)
Q Consensus 246 ~~~l~--------------------------------------------------------------------------- 250 (625)
.+||.
T Consensus 223 ~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~ 302 (814)
T COG0495 223 RNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPA 302 (814)
T ss_pred HcCcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeec
Confidence 88852
Q ss_pred ------------------------------------------------------------------c-------------
Q 006917 251 ------------------------------------------------------------------D------------- 251 (625)
Q Consensus 251 ------------------------------------------------------------------~------------- 251 (625)
.
T Consensus 303 ~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~ 382 (814)
T COG0495 303 HAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGV 382 (814)
T ss_pred cCCCcceeccccccCCCCCCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCce
Confidence 0
Q ss_pred -----------------------------------CCCCcccccccCCCcccCCCC------------------------
Q 006917 252 -----------------------------------GLKPRCITRDLKWGVPVPHEK------------------------ 272 (625)
Q Consensus 252 -----------------------------------~l~d~~IsR~~~WGi~vP~~~------------------------ 272 (625)
.++||.+|||++||.|+|.-.
T Consensus 383 linS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~ 462 (814)
T COG0495 383 LINSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRG 462 (814)
T ss_pred EeccccccCcchhHHHHHHHHhHHHhcCCceEEecccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCccccccccc
Confidence 366899999999999999721
Q ss_pred ------------------------CCCceeeeeccccchHHHhc----c----CCChhhHhhcCCCCCcceEEEEeeccc
Q 006917 273 ------------------------FKDKVFYVWFDAPIGYISIT----S----CYTPDWEEWWKNPENVALYQFMGKDNA 320 (625)
Q Consensus 273 ------------------------~~~~viyvWfDa~~~yi~~~----~----~~~~~~~~~w~~p~d~~~i~~~GkD~~ 320 (625)
.+..||..|+++..-|+... . ...+.++.|. |.| ++++|+||+
T Consensus 463 ~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~--PVD---~yigG~eha 537 (814)
T COG0495 463 LGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWY--PVD---LYIGGIEHA 537 (814)
T ss_pred CCCCCCCCCCcceEEEecCCCceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhccc--Chh---eeecchhHH
Confidence 13467778888886555322 1 0113466566 578 999999999
Q ss_pred chhH---hHHHHHhhcCCCC--ccCcceEEeeeeeec-CCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCC
Q 006917 321 PFHT---VMFPSTLLGTEEN--WTLMKTISVTEYLNY-EAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDT 394 (625)
Q Consensus 321 ~fH~---~~~pa~l~a~~~~--~~~~~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~ 394 (625)
..|- .+|...|...|+- -.|+++++.+|||+. +|+|||||+||+|+|+++++ +||||++|+|++..+|..+|+
T Consensus 538 vlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~-~yGADt~Rl~~m~~ap~~~d~ 616 (814)
T COG0495 538 VLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVE-KYGADTVRLYIMFAAPPEQDL 616 (814)
T ss_pred HHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHH-HhCchHHHHHHHhhCChhhCC
Confidence 8774 4566666666640 124566999999998 79999999999999999998 899999999999999999999
Q ss_pred CcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHh-ccHHH
Q 006917 395 LFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEK-VKLKQ 473 (625)
Q Consensus 395 ~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~-~~~~~ 473 (625)
+|+.+.+... ..+.+.+++++....+.... ... ......+++ .++++++.+.+.++. +.++.
T Consensus 617 ~W~e~gv~g~--~rfL~r~~~l~~~~~~~~~~---------~~~---~~~~~~~~~---~~h~~~~~v~~~~e~~~~~nt 679 (814)
T COG0495 617 EWSESGVEGA--RRFLQRVWNLVKEHLEKLVE---------ELT---KEQGKEDRW---LLHRTIKKVTEDFEARQTFNT 679 (814)
T ss_pred CCChhhhHHH--HHHHHHHHHHHHHhhhcccc---------ccc---chhhHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 9999998775 45555555555544332100 000 001123444 455566777788876 88999
Q ss_pred HHHHHHHHHHHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 474 GLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 474 a~~~i~~l~~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
++..+++|++...+|...... +. .++.+++..+..||+||+||+||++|+.||-
T Consensus 680 ~i~~~m~l~N~l~~~~~~~~~------~~-------~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~ 733 (814)
T COG0495 680 AIAALMELLNALRKYLRRTEG------DR-------KVLREALETWVRLLAPFAPHIAEELWEELGN 733 (814)
T ss_pred HHHHHHHHHHHHHHHHhcccc------hH-------HHHHHHHHHHHHHhcccccHHHHHHHHHhcC
Confidence 999999999999998876421 11 4455677899999999999999999999994
No 39
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-63 Score=531.48 Aligned_cols=508 Identities=18% Similarity=0.239 Sum_probs=404.5
Q ss_pred cccCCCCCCCCC---CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc--
Q 006917 12 RNHRVAKLPVPG---KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE-- 86 (625)
Q Consensus 12 ~~~~~~~~p~~~---~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-- 86 (625)
|.+...|.|..+ ...|.|+.|||+++|.+|||||.+..| .|+++||.||.|+.|.++.|+|+.|..++.-.++.
T Consensus 59 w~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~ai-qD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~ 137 (995)
T KOG0432|consen 59 WEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAI-QDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLA 137 (995)
T ss_pred HHHcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHH-HHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHH
Confidence 344566777654 566899999999999999999999776 99999999999999999999999999988777653
Q ss_pred --C-C------------CHHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeee
Q 006917 87 --N-C------------TTQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLY 149 (625)
Q Consensus 87 --g-~------------~~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y 149 (625)
+ + ...++-+++...+.+++++||.++| +-..|+++...+.|.+.|.+|++.|+||++.+.+.|
T Consensus 138 ~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW 217 (995)
T KOG0432|consen 138 REGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNW 217 (995)
T ss_pred HhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeee
Confidence 2 2 2334556777889999999999887 445699999999999999999999999999999999
Q ss_pred eCCCCcccccccccc--------------------------------CC---------CC------------CccccC--
Q 006917 150 CDTCKRFLADRLVEG--------------------------------SC---------PT------------LGCNYD-- 174 (625)
Q Consensus 150 ~~~~~~~l~~~~v~g--------------------------------~c---------p~------------~~c~~~-- 174 (625)
|+...+.++|.+|+. .| |. ..++|.
T Consensus 218 ~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~l 297 (995)
T KOG0432|consen 218 CPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHL 297 (995)
T ss_pred chhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccceeEEeCCCCcccccc
Confidence 999999999998861 11 10 000110
Q ss_pred --------------------------------------------------------CCCCccccccCCC-----------
Q 006917 175 --------------------------------------------------------SARGDQCEKCGKL----------- 187 (625)
Q Consensus 175 --------------------------------------------------------~~~g~~ce~cg~~----------- 187 (625)
+..|.....||.+
T Consensus 298 hGk~~~hP~~~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~k 377 (995)
T KOG0432|consen 298 HGKFVKHPFTGRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREK 377 (995)
T ss_pred cCceeecCCCCCccceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHH
Confidence 1234445556632
Q ss_pred -------------CCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCC
Q 006917 188 -------------LNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLK 254 (625)
Q Consensus 188 -------------~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 254 (625)
..+..+..|.|.|+|+-+|....+|||++.+.+..+..+.+++... -..|+........|++ +.+
T Consensus 378 vv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L-~i~P~~~~k~w~~W~~-~i~ 455 (995)
T KOG0432|consen 378 VVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKL-EILPEFHEKEWYRWLE-NIR 455 (995)
T ss_pred HHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCe-EECchHHHHHHHHHHh-hcc
Confidence 1222346799999999999999999999999999999999986653 2356777777889996 599
Q ss_pred CcccccccCCCcccCCCC---------------------------------------CCCceeeeeccccchHHHhccCC
Q 006917 255 PRCITRDLKWGVPVPHEK---------------------------------------FKDKVFYVWFDAPIGYISITSCY 295 (625)
Q Consensus 255 d~~IsR~~~WGi~vP~~~---------------------------------------~~~~viyvWfDa~~~yi~~~~~~ 295 (625)
|||||||+.||..||.+. -+.+|+|+||.+.+..++.+ ||
T Consensus 456 DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~l-GW 534 (995)
T KOG0432|consen 456 DWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTL-GW 534 (995)
T ss_pred ccchhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhc-CC
Confidence 999999999999999831 14589999999999888875 78
Q ss_pred Ch---hhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCCcccCchhhh
Q 006917 296 TP---DWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVK 371 (625)
Q Consensus 296 ~~---~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l 371 (625)
++ ++..|+|. + +.=.|.||+||+..-...+-+.+... .|++.|+.||+|. -.|+|||||+||||+|.|+|
T Consensus 535 P~~t~d~~~fyP~--s---llETG~DILfFWVaRMvmLg~kLtG~-lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI 608 (995)
T KOG0432|consen 535 PEETKDFKNFYPL--S---LLETGHDILFFWVARMVMLGLKLTGE-LPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVI 608 (995)
T ss_pred ccccccHHhcCCc--h---hhhcCchHHHHHHHHHHHhhhhhcCC-CCchheeechhhccccccccchhhccccCHHHHh
Confidence 75 68888864 3 56679999999654332222222222 4789999999996 89999999999999999998
Q ss_pred hc------------------------------------CCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHH
Q 006917 372 DT------------------------------------NIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGN 415 (625)
Q Consensus 372 ~~------------------------------------~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n 415 (625)
+- ..|.|+|||.|++....+.|+++|...+... ..++|+|+|
T Consensus 609 ~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~--r~FcNKlWN 686 (995)
T KOG0432|consen 609 DGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGY--RHFCNKLWN 686 (995)
T ss_pred ccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhH--HHHHHHHHH
Confidence 60 1499999999999999999999999988753 799999999
Q ss_pred HHHHHHHhhhCCCCCCCCCCCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHhHHHH
Q 006917 416 FVNRVLSFIAKPPGRGYGSIIPDSP---KADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSIS--SEGNAYLQ 490 (625)
Q Consensus 416 ~~~R~~~~~~k~~~~~~~~~~p~~~---~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~--~~~N~y~~ 490 (625)
+.++++..+.+ + .+|... .....-.|+|+++.|+..++.+.+.|+.|+|+.|...+.+|. ..+.-|++
T Consensus 687 a~rF~l~~lg~----~---~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE 759 (995)
T KOG0432|consen 687 ATRFALQRLGE----N---FVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLE 759 (995)
T ss_pred HHHHHHHhccc----C---CCCCcccccCCCcchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887554 2 223211 111112899999999999999999999999999999999987 56999999
Q ss_pred hccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcC
Q 006917 491 ESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLN 539 (625)
Q Consensus 491 ~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg 539 (625)
..+|-.. .++......+..++..++.....||+||||+++|++|++|-
T Consensus 760 ~~Kp~l~-~~~~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP 807 (995)
T KOG0432|consen 760 ATKPLLW-GDSEALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLP 807 (995)
T ss_pred HhhHHhc-CCcHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcc
Confidence 9998322 22334555567788888889999999999999999999983
No 40
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=8.1e-64 Score=517.75 Aligned_cols=293 Identities=24% Similarity=0.394 Sum_probs=265.2
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006917 26 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVY 105 (625)
Q Consensus 26 ~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 105 (625)
+++||+|||||||.+||||+++ ++.+|+++||+|++|++|.+++|+||||+||+.+|++.|++|+++++++.+.|++++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~-~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~ 79 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRT-YTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQL 79 (314)
T ss_pred CeEEecCCCCCCCCccccchHH-HHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999997 567999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccc
Q 006917 106 NWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEK 183 (625)
Q Consensus 106 ~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~ 183 (625)
++|||++| .+++|++++|.+.++++|.+|+++|+||++.++++||.
T Consensus 80 ~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~-------------------------------- 127 (314)
T cd00812 80 KRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCK-------------------------------- 127 (314)
T ss_pred HHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeC--------------------------------
Confidence 99999998 57889999999999999999999999999999999972
Q ss_pred cCCCCCCCccCCCccccCCCccEEEeccceeeec--cchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccc
Q 006917 184 CGKLLNPTELKDPRCKVCQATPKIRDTDHLFLEL--PLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRD 261 (625)
Q Consensus 184 cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~ 261 (625)
.++||||++ ++|++.+.++++++. .||++.++.+.+|++ |||+
T Consensus 128 -------------------------~~~~~f~~l~~~~~~~~l~~~l~~~~---~~p~~~~~~~~~~l~-------isR~ 172 (314)
T cd00812 128 -------------------------LLDQWFLKYSETEWKEKLLKDLEKLD---GWPEEVRAMQENWIG-------CSRQ 172 (314)
T ss_pred -------------------------ccceEEEEcCcHHHHHHHHHHHHhcC---cCCHHHHHHHHHHhe-------eeee
Confidence 467999999 999999999999874 489999999999995 9999
Q ss_pred cCCCcccCCCCCCCceeeeeccccc---hHHHhccC----------CChhhHhhcCCCCCcceEEEEeecccchhH---h
Q 006917 262 LKWGVPVPHEKFKDKVFYVWFDAPI---GYISITSC----------YTPDWEEWWKNPENVALYQFMGKDNAPFHT---V 325 (625)
Q Consensus 262 ~~WGi~vP~~~~~~~viyvWfDa~~---~yi~~~~~----------~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~---~ 325 (625)
+.||+|+|+ ++++|||+|+++ +|+++... ..+.|+.||| .| +|++|+||++||+ +
T Consensus 173 ~~wGipvP~----~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p--~d---i~v~G~D~i~~h~~~~~ 243 (314)
T cd00812 173 RYWGTPIPW----TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYP--VD---IYIGGKEHAPNHLLYSR 243 (314)
T ss_pred cCCcCCcCc----ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCC--Ce---eeecchhHHHHHHHHHH
Confidence 999999996 789999999997 67764421 1134778885 56 9999999999997 8
Q ss_pred HHHHHhhcCCC-CccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCH
Q 006917 326 MFPSTLLGTEE-NWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTW 398 (625)
Q Consensus 326 ~~pa~l~a~~~-~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~ 398 (625)
+|++++.++|+ ...+|+++.+||||+++|+|||||+||+|+++|+++ .+|+|++|||+++.++ .|.+|+|
T Consensus 244 ~~~~~l~~~g~~~~~~~~~~~~~g~v~~~g~KmSkS~Gn~v~~~dll~-~~~~Da~R~~ll~~~~--~~~~f~~ 314 (314)
T cd00812 244 FNHKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAIK-KYGADAARLYILFAAP--PDADFDW 314 (314)
T ss_pred HHHHHHcCcccccccCcHHheecceEecCccccCCcCCCCCCHHHHHH-HhCcHHHHHHHHhcCC--cCCCCCC
Confidence 99999999885 013688999999999999999999999999999998 6999999999999777 8999875
No 41
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-62 Score=512.14 Aligned_cols=484 Identities=20% Similarity=0.258 Sum_probs=385.4
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHH-HHHHHc------CCCHH------
Q 006917 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATE-TKAMEE------NCTTQ------ 91 (625)
Q Consensus 25 ~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~-~~a~~~------g~~~~------ 91 (625)
..|...+ +||.||||||++.++ .||+.||+-+.|.+|+|+.|||+||.||+ .+|.+. ..+|.
T Consensus 59 ~~f~L~d----anG~lhlghalnkIL-kdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~~A 133 (937)
T KOG0433|consen 59 VEFELKD----ANGNLHLGHALNKIL-KDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAKA 133 (937)
T ss_pred ceEEEec----cCCCccchHHHHHHH-HHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHHHH
Confidence 3455555 999999999999755 99999999999999999999999999999 466432 23454
Q ss_pred -HHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCcccccccccc----
Q 006917 92 -QICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEG---- 164 (625)
Q Consensus 92 -~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g---- 164 (625)
.+++...+.+++.|+++||..| .-|-|.+++|.....++|.+|+++|+||++..+|+|+|+..+.|++++++.
T Consensus 134 r~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH 213 (937)
T KOG0433|consen 134 RIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDNH 213 (937)
T ss_pred HHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCcCC
Confidence 4677888999999999999777 456799999999999999999999999999999999999999999998871
Q ss_pred ----------------------------------CCCC------------------------------------------
Q 006917 165 ----------------------------------SCPT------------------------------------------ 168 (625)
Q Consensus 165 ----------------------------------~cp~------------------------------------------ 168 (625)
|.|+
T Consensus 214 ~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~ 293 (937)
T KOG0433|consen 214 QSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEK 293 (937)
T ss_pred cceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhhhhh
Confidence 2232
Q ss_pred -----------------CccccC---------------------------------------------------CCCCcc
Q 006917 169 -----------------LGCNYD---------------------------------------------------SARGDQ 180 (625)
Q Consensus 169 -----------------~~c~~~---------------------------------------------------~~~g~~ 180 (625)
.+|.|. |.+|..
T Consensus 294 ~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~y 373 (937)
T KOG0433|consen 294 SSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCY 373 (937)
T ss_pred hcCcceeeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCCce
Confidence 011110 122333
Q ss_pred ccccCCCCCCC------------------------ccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCC
Q 006917 181 CEKCGKLLNPT------------------------ELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGS 236 (625)
Q Consensus 181 ce~cg~~~~~~------------------------~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~ 236 (625)
..+.|..++-. ...+|+.||++.|+++|.++|||+++..++....+.+++..+.
T Consensus 374 T~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~Vk~~-- 451 (937)
T KOG0433|consen 374 TREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDVKVA-- 451 (937)
T ss_pred ecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHHhhceeC--
Confidence 33333222111 1247999999999999999999999999999999999998864
Q ss_pred CChhHHHHHHHHHhcCCCCcccccccCCCcccCCCC--------------------------------------------
Q 006917 237 WSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEK-------------------------------------------- 272 (625)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~-------------------------------------------- 272 (625)
|.+...++..++. +.++|||||||.||+|||.-.
T Consensus 452 -P~~~~~rl~~~~~-~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~ 529 (937)
T KOG0433|consen 452 -PGDSDLRLKQLVT-TRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVR 529 (937)
T ss_pred -CcchHHHHHHHHc-CCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhc
Confidence 4555557778876 589999999999999999820
Q ss_pred ----------CCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeeccc--chhHhHHHHHhhcCCCCccC
Q 006917 273 ----------FKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNA--PFHTVMFPSTLLGTEENWTL 340 (625)
Q Consensus 273 ----------~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~--~fH~~~~pa~l~a~~~~~~~ 340 (625)
...++|+||||++..+-..... ..+ ..+| ++..|.|+. ||.+.+...+... +..|
T Consensus 530 e~~~~a~ey~kgtDimDVWFDSGssWs~v~~~-~~~------~~aD---v~LEG~DQ~rGWFQSsLLTsvA~q---~kAP 596 (937)
T KOG0433|consen 530 EIPDIASEYKKGTDIMDVWFDSGSSWSAVLDN-ERE------HVAD---VYLEGVDQFRGWFQSSLLTSVAVQ---NKAP 596 (937)
T ss_pred ccchhHHHhccCCceeeeEecCCCcceeecCC-CCC------ccee---eEEecchhcchHHHHHHHHHHHHh---ccCC
Confidence 1258999999998776554321 110 0245 899999996 6887665543322 2258
Q ss_pred cceEEeeeee-ecCCccccccCCcccCchhhhhcC------CCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHH
Q 006917 341 MKTISVTEYL-NYEAGKFSKSKGVGVFGNDVKDTN------IPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNL 413 (625)
Q Consensus 341 ~~~i~~hg~l-~~~G~KMSKS~GN~I~~~d~l~~~------~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l 413 (625)
++.+++|||. ..+|.|||||+||||+|+.+++ + ||+|+||||.+. +....|+.....-+.++ ++-..++
T Consensus 597 Yk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~-G~~k~payGaD~LR~WVA~-~~~t~d~~iGp~il~qv--~e~l~K~ 672 (937)
T KOG0433|consen 597 YKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTD-GSLKQPAYGADGLRFWVAG-SENTGESKIGPKILDQV--DEKLIKF 672 (937)
T ss_pred chheeeeeeEecCCccchhhcccCcCCHHHHhC-CcccCCCccccceeeeeec-ccccCceecCHHHHHHH--HHHHHHH
Confidence 8999999996 5899999999999999999997 6 999999999996 77779999999999887 7888999
Q ss_pred HHHHHHHHHhhhCCCCCCCCCC---CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HHhHH
Q 006917 414 GNFVNRVLSFIAKPPGRGYGSI---IPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISS--EGNAY 488 (625)
Q Consensus 414 ~n~~~R~~~~~~k~~~~~~~~~---~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~--~~N~y 488 (625)
.|.++.+++.+.+ +++. +|- .+..-.|+.++..+.++.+++++.|++|+|++++..+..|.. .++.|
T Consensus 673 R~T~RfllGnl~d-----~~~~~~~~p~---~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~Y 744 (937)
T KOG0433|consen 673 RNTFRFLLGNLQD-----FDGKQVKFPL---KDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFY 744 (937)
T ss_pred HhHHHHHhhcccc-----cCCccccccc---hhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHH
Confidence 9999999998876 3322 332 234456899999999999999999999999999999999885 48899
Q ss_pred HHhccccccc-cCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCC
Q 006917 489 LQESQFWKLY-NEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPT 542 (625)
Q Consensus 489 ~~~~~pw~l~-k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~ 542 (625)
++..+..... +.+...+.++..++.+++..++..++||+|++++++|+.|....
T Consensus 745 fdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~~ 799 (937)
T KOG0433|consen 745 FDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGSH 799 (937)
T ss_pred HHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCCC
Confidence 9988874433 22445666788999999999999999999999999999997543
No 42
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=7.3e-60 Score=524.03 Aligned_cols=500 Identities=15% Similarity=0.132 Sum_probs=351.4
Q ss_pred CCCcccccCCCCCCCCCC-CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHH-HCCCceeeeccCcccchHHHHHHH
Q 006917 7 EPDGERNHRVAKLPVPGK-RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCR-LRGYNALYICGTDEYGTATETKAM 84 (625)
Q Consensus 7 ~~~~~~~~~~~~~p~~~~-~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r-~~G~~V~~~~g~D~~G~~i~~~a~ 84 (625)
.-|++++++++|+|..++ -++|||+ |||++.+||||||+ +|.+||++||++ ..||+|.|++|+||||+||+.+|+
T Consensus 42 lyNtlt~~k~~f~p~~~~~v~~Y~CG--PTvYd~~HiGhart-~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~ 118 (651)
T PTZ00399 42 VNNSLTGGKVEFVPQNGRQVRWYTCG--PTVYDSSHLGHART-YVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAR 118 (651)
T ss_pred EEECCCCCccccccCCCCeeEEEEeC--CCccCCcccccchH-HHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHH
Confidence 348999999999997654 3456555 55669999999998 677999999999 899999999999999999999999
Q ss_pred HcCCC-HHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccc
Q 006917 85 EENCT-TQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVE 163 (625)
Q Consensus 85 ~~g~~-~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~ 163 (625)
+.|++ +.++++++.+.|.+++++|||.++.++++. .+|...+..++++|+++|++|++.+.+||+++
T Consensus 119 ~~g~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~----------- 186 (651)
T PTZ00399 119 EEKLSIFLELARKWEKEFFEDMKALNVRPPDVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVE----------- 186 (651)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEch-----------
Confidence 99999 999999999999999999999988776655 68999999999999999999987766666654
Q ss_pred cCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHH
Q 006917 164 GSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQ 243 (625)
Q Consensus 164 g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (625)
+|.+. ...+.+.. |.+..+
T Consensus 187 -------------------------------------------------------~f~~~-~~~Yg~L~-----p~~~~~ 205 (651)
T PTZ00399 187 -------------------------------------------------------AFRKA-GHVYPKLE-----PESVAD 205 (651)
T ss_pred -------------------------------------------------------hcccc-hhhHHhhC-----hhhcCC
Confidence 33222 11111110 000001
Q ss_pred HHHHHHhcC-CCCcc-cccc-cC---CCcccCCCCCCCceeeeeccccchHHHhccCCCh----hhHhhcCCCCCcceEE
Q 006917 244 GTYAWLKDG-LKPRC-ITRD-LK---WGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTP----DWEEWWKNPENVALYQ 313 (625)
Q Consensus 244 ~~~~~l~~~-l~d~~-IsR~-~~---WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~----~~~~~w~~p~d~~~i~ 313 (625)
.......++ +.+.+ ++|+ .+ ||++.|++. . |. +++|+- -.+|+- .-.++...+.| ||
T Consensus 206 ~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep--~-----W~-SpwG~G--rPGWHiECsam~~~~lg~~~D---Ih 272 (651)
T PTZ00399 206 EDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEP--S-----WD-SPWGKG--RPGWHIECSAMASNILGDPID---IH 272 (651)
T ss_pred HHHHhcccCCccccCcCCCCCccHHhhCCCCCCCC--C-----CC-CCCCCC--CCCchHHHHHHHHHHcCCcce---ee
Confidence 111222233 33443 6673 44 888888641 1 43 566652 123331 12334444677 99
Q ss_pred EEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCC
Q 006917 314 FMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSD 393 (625)
Q Consensus 314 ~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d 393 (625)
.+|.|++|+|+.+..|+..|+....+..+.++++|||+++|+|||||+||+|+|.|+++ .||+|++||||++ .++++|
T Consensus 273 ~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLe-kygaDaLR~~lLs-~~~~~d 350 (651)
T PTZ00399 273 SGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALS-KYTARQIRLLFLL-HKWDKP 350 (651)
T ss_pred ccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHH-HcChHHHHHHHHh-cCCCCC
Confidence 99999999999999999888643223345566669999999999999999999999998 7999999999997 699999
Q ss_pred CCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-HhccHH
Q 006917 394 TLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAM-EKVKLK 472 (625)
Q Consensus 394 ~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~ 472 (625)
++||++.+.+..|. .+.+.|++.|+.+.+.+ .. .+.. ....+.|++|+..+..+.+.+.++| ++|+++
T Consensus 351 ldFS~e~l~~a~~~--~~~l~n~~~rl~s~l~~----~~---~~~~--~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~ 419 (651)
T PTZ00399 351 MNYSDESMDEAIEK--DKVFFNFFANVKIKLRE----SE---LTSP--QKWTQHDFELNELFEETKSAVHAALLDNFDTP 419 (651)
T ss_pred CccCHHHHHHHHHH--HHHHHHHHHHHHHHHhh----cc---cccc--ccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 99999999887544 46788888888877654 11 1111 1124567899999999999999999 789999
Q ss_pred HHHHHHHHHHHHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhch--------------hhHHHHHHH---
Q 006917 473 QGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPF--------------MPSFSLEVL--- 535 (625)
Q Consensus 473 ~a~~~i~~l~~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~--------------~P~~ae~i~--- 535 (625)
.|+..|++|++.+|.|++... ......+..+..++..++.+|++.-..- +|. .+.+.
T Consensus 420 ~Al~~L~eLv~~~N~yi~~~~-----~~~~~ll~~v~~~l~~~l~ILGl~~~~~m~~~~~~~~~~~~~~~~-i~~l~~~R 493 (651)
T PTZ00399 420 EALQALQKLISATNTYLNSGE-----QPSAPLLRSVAQYVTKILSIFGLVEGSDGLGSQGQNSTSENFKPL-LEALLRFR 493 (651)
T ss_pred HHHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHHhcccCCcchhhccccccccchhhhHHH-HHHHHHHH
Confidence 999999999999999997210 0112223445555556666666521010 011 11111
Q ss_pred HHcC---CCC----------cccccCCcccchhhhccCCCccCCCCCccCCC--C-CCccCCChHHHH-HHHHHhc---C
Q 006917 536 KQLN---VPT----------ETKFSLSDENGDLERARKPWEILPAGHRIGMS--S-PLFKELKDEDVR-FFREKFA---G 595 (625)
Q Consensus 536 ~~Lg---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~--~-~Lf~ki~~~~i~-~~~~~~~---~ 595 (625)
+.+. ... ...+..|| ..|+..+...|+.|.+. . +++++++++++. +.+++.+ +
T Consensus 494 ~~~R~~a~~~~~~~~~~~~~~~~~~~~D-------~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (651)
T PTZ00399 494 DEVRDAAKAEMKLISLDKKKKQLLQLCD-------KLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKEALKEQ 566 (651)
T ss_pred HHHHHHHHhccccccchhhhhhHHHHHH-------HHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHHHHHHHH
Confidence 1111 000 01122222 34443466789999763 3 689999977643 3333322 2
Q ss_pred chhhHHHHHHHHHHHHHHHhhccccc
Q 006917 596 SQADRAVQAEAEAKRLAEHLKKTKIS 621 (625)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (625)
++.+|++++++++++++|+++|++||
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~i~ 592 (651)
T PTZ00399 567 KRLRKLKKQEEKKKKELEKLEKAKIP 592 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33367778888899999999999997
No 43
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=2.6e-61 Score=539.26 Aligned_cols=363 Identities=24% Similarity=0.355 Sum_probs=273.3
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc-CC------------
Q 006917 22 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE-NC------------ 88 (625)
Q Consensus 22 ~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-g~------------ 88 (625)
.++++|+|+.||||+||.|||||+++.++ .|+++||+||+|++|++++|+|+||+||+.++++. |.
T Consensus 20 ~~~~~f~i~~~PPy~nG~lH~GH~~~~~~-~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~ 98 (601)
T PF00133_consen 20 KNKPKFFIHDPPPYANGDLHIGHALNKTI-KDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGRE 98 (601)
T ss_dssp TTSGEEEEEE---BTSSS-BHHHHHHHHH-HHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHH
T ss_pred CCCCcEEEEeCCCCCCCcccHHHHHHHHH-HHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccc
Confidence 45778999999999999999999999655 99999999999999999999999999999999875 33
Q ss_pred ----CHHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCcccccccc
Q 006917 89 ----TTQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLV 162 (625)
Q Consensus 89 ----~~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v 162 (625)
.|+++++++.+.++++|++||++.| +.+.|+++.|.+.++++|.+|+++|+||++..+++||+.|++.|++.+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~t~lsd~Ev 178 (601)
T PF00133_consen 99 EFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQTALSDHEV 178 (601)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGE
T ss_pred cchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccccchhhhhc
Confidence 3678899999999999999999776 5678999999999999999999999999999999999999999999988
Q ss_pred cc--------------------------CCCC-----------Cc-----------------------------------
Q 006917 163 EG--------------------------SCPT-----------LG----------------------------------- 170 (625)
Q Consensus 163 ~g--------------------------~cp~-----------~~----------------------------------- 170 (625)
+. |.|+ +.
T Consensus 179 ~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~ 258 (601)
T PF00133_consen 179 EYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVAKDLVEKLSKQEKTKLEDFRGKE 258 (601)
T ss_dssp EEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEEHHHHHHHHTTTSSSEEEEECHH
T ss_pred ccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHHHHHHHHHHhhhhhcccccCcce
Confidence 62 2222 00
Q ss_pred ---ccc--------------------------------------------------CCCCCccccccCCCCCC-------
Q 006917 171 ---CNY--------------------------------------------------DSARGDQCEKCGKLLNP------- 190 (625)
Q Consensus 171 ---c~~--------------------------------------------------~~~~g~~ce~cg~~~~~------- 190 (625)
+.+ -+..|...+.+|.+---
T Consensus 259 L~g~~~~~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~~ar~ 338 (601)
T PF00133_consen 259 LVGLKYIHPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAGKFKGMKVFEARE 338 (601)
T ss_dssp HTTSEEE-TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCSTTTTSBHHHHHH
T ss_pred ecCcEeccccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCceEeecccccCCceeeeccH
Confidence 000 01122222223222100
Q ss_pred -----------------CccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCC
Q 006917 191 -----------------TELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGL 253 (625)
Q Consensus 191 -----------------~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 253 (625)
.+...|+|||||++++.+.++|||++++++++.+.+.++++.+.|.+ .++++.+||.. +
T Consensus 339 ~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~---~~~~~~~~i~~-l 414 (601)
T PF00133_consen 339 KIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKIKFYPES---YRKRFENWIDN-L 414 (601)
T ss_dssp HHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTSEESSST---CHHHHHHHHHT--
T ss_pred HHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccceEEccc---chhhhhhhccc-c
Confidence 01135899999999999999999999999999999999998876555 45577889875 8
Q ss_pred CCcccccccCCCcccCCCC----------------------------------------------CCCceeeeeccccch
Q 006917 254 KPRCITRDLKWGVPVPHEK----------------------------------------------FKDKVFYVWFDAPIG 287 (625)
Q Consensus 254 ~d~~IsR~~~WGi~vP~~~----------------------------------------------~~~~viyvWfDa~~~ 287 (625)
+|||||||+.||+|+|.|. .+.+|++|||||.+.
T Consensus 415 ~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~~ 494 (601)
T PF00133_consen 415 RDWCISRQRYWGTPIPIWYCEDCGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGLW 494 (601)
T ss_dssp -EEE-EESSSSSEBETEEEETTSEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCTC
T ss_pred ccchhhccCCCCccceeeecccCcccccccccccccccccccccccccccccccccccccccceEEeeeeccccccccCC
Confidence 8999999999999999852 035799999999887
Q ss_pred HHHhccCCC----hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCC
Q 006917 288 YISITSCYT----PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKG 362 (625)
Q Consensus 288 yi~~~~~~~----~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~G 362 (625)
+++.. +++ .+|+.|+ |.| +.+.|+||+++|-...-....++.. ..|++.+++|||+. .+|+|||||+|
T Consensus 495 ~~~~~-~~~~~~~~~~~~~~--P~D---~~~~G~D~~~~W~~~~l~~~~~l~~-~~pfk~v~~hG~vld~~G~KMSKS~G 567 (601)
T PF00133_consen 495 PFAVL-GWPENDREEFEYWY--PVD---LYIEGKDQIRGWFQSSLFLSVALFG-KEPFKKVITHGFVLDEDGRKMSKSKG 567 (601)
T ss_dssp HHHHT-TSTTCSCHHHHHHS--SBS---EEEEEGGGTTTHHHHHHHHHHHHSS-STSBSEEEEE--EEETTSSB-BTTTT
T ss_pred ccccc-ccccccchhccccC--Ccc---cccCCccchhhHHHHhHhhcccccc-CCchheeeecccccccceeecccCCC
Confidence 77654 332 4688777 467 8999999998875443333223222 24679999999986 79999999999
Q ss_pred cccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcC
Q 006917 363 VGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFT 397 (625)
Q Consensus 363 N~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs 397 (625)
|+|+|.++++ .||+|++|+|++..++..+|++||
T Consensus 568 Nvi~p~~ii~-~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 568 NVIDPEDIIE-KYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp B--BHHHHHH-HT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred cccCHHHHHH-HhCcHHHHHHHHhcCCcccCcccC
Confidence 9999999998 799999999999778888999986
No 44
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-58 Score=477.24 Aligned_cols=455 Identities=20% Similarity=0.260 Sum_probs=365.2
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006917 23 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHK 102 (625)
Q Consensus 23 ~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 102 (625)
++++ ||.+..|||+|.|||||.|.++| .|+++||.||+||+|+..+|||-.|+|.+.+|.+.|+.|+.++..+++.++
T Consensus 56 sk~K-YiLsMFPYPSG~LHiGHvRVYTI-sD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk 133 (876)
T KOG0435|consen 56 SKKK-YILSMFPYPSGALHIGHVRVYTI-SDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMK 133 (876)
T ss_pred CCCc-eEEEecCCCCCcccccceEEEEe-hHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHH
Confidence 3444 99999999999999999998666 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCcc
Q 006917 103 AVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQ 180 (625)
Q Consensus 103 ~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ 180 (625)
+++++||+.|| +.+.|.+|+|.+..|++|.+|+++|++|+.+..+.|||.+.+.|++.+|.
T Consensus 134 ~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD----------------- 196 (876)
T KOG0435|consen 134 QQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVD----------------- 196 (876)
T ss_pred HHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhc-----------------
Confidence 99999999886 67899999999999999999999999999999999999999999977652
Q ss_pred ccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHh----------
Q 006917 181 CEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLK---------- 250 (625)
Q Consensus 181 ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~---------- 250 (625)
.++.+||+|.+|+.+.-.|||++.++|.++|++-++.. +.||. ++++..+||.
T Consensus 197 -------------~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L---~~W~~-vk~mQrnWIG~~~G~el~F~ 259 (876)
T KOG0435|consen 197 -------------ADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETL---PEWPE-VKDMQRNWIGRCDGAELMFP 259 (876)
T ss_pred -------------ccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhh---hhhhh-HHHHHHhhcccccceEEEEE
Confidence 23567999999999999999999999999999999965 47888 8888888862
Q ss_pred --------------------------------------------------------------------------------
Q 006917 251 -------------------------------------------------------------------------------- 250 (625)
Q Consensus 251 -------------------------------------------------------------------------------- 250 (625)
T Consensus 260 ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~~v~ 339 (876)
T KOG0435|consen 260 LLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVADYVL 339 (876)
T ss_pred eccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEechhc
Confidence
Q ss_pred -----------------------------------------------------------------------------cCC
Q 006917 251 -----------------------------------------------------------------------------DGL 253 (625)
Q Consensus 251 -----------------------------------------------------------------------------~~l 253 (625)
..|
T Consensus 340 ~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~kL 419 (876)
T KOG0435|consen 340 DPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVSYKL 419 (876)
T ss_pred cCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhccccccchhHHHHHHHHHHHHHHhcCCCcceecchh
Confidence 147
Q ss_pred CCcccccccCCCcccCCCC--------------------------------------------------CCCceeeeecc
Q 006917 254 KPRCITRDLKWGVPVPHEK--------------------------------------------------FKDKVFYVWFD 283 (625)
Q Consensus 254 ~d~~IsR~~~WGi~vP~~~--------------------------------------------------~~~~viyvWfD 283 (625)
+||-|||||+||+|||.-. .+.+||++|+|
T Consensus 420 kDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvD 499 (876)
T KOG0435|consen 420 KDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVD 499 (876)
T ss_pred hhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhhc
Confidence 8999999999999999810 25799999999
Q ss_pred ccchHHHhccC------CChhhHhhcCCCCCcceEEEEeecccchh---HhHHHHHhhcCCC--CccCcceEEeeeee--
Q 006917 284 APIGYISITSC------YTPDWEEWWKNPENVALYQFMGKDNAPFH---TVMFPSTLLGTEE--NWTLMKTISVTEYL-- 350 (625)
Q Consensus 284 a~~~yi~~~~~------~~~~~~~~w~~p~d~~~i~~~GkD~~~fH---~~~~pa~l~a~~~--~~~~~~~i~~hg~l-- 350 (625)
+.+-|+..+.. +......+|. |.| ++++|++|.-.| +-+|.-+|...|. .-.|++.++..|+|
T Consensus 500 SsWYYlRylDpkN~e~~~d~a~a~k~M-PVD---vYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G 575 (876)
T KOG0435|consen 500 SSWYYLRYLDPKNPEEPFDKAKAKKNM-PVD---VYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRG 575 (876)
T ss_pred cceeeEeecCCCCcccccchhhhhccC-cee---EEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccc
Confidence 99999865421 1123455666 688 999999997554 5566667766653 11244444444432
Q ss_pred ----------------------------e-cC-------CccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCC
Q 006917 351 ----------------------------N-YE-------AGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDT 394 (625)
Q Consensus 351 ----------------------------~-~~-------G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~ 394 (625)
. .+ =+|||||++|+|+|.+++. .||+|++|+|++-.+|..+++
T Consensus 576 ~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~-~yG~D~tRl~ilf~ap~~~~~ 654 (876)
T KOG0435|consen 576 KTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVL-EYGVDTTRLYILFAAPPRDPI 654 (876)
T ss_pred eEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHH-HhCchHHHHHHHhhCCccccc
Confidence 1 01 1699999999999999998 799999999999999999999
Q ss_pred CcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHH-hccH
Q 006917 395 LFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSP--KADLHPSTKMLAEKISNHIDQYIEAME-KVKL 471 (625)
Q Consensus 395 ~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~--~~~~~~~d~~l~~~l~~~~~~v~~a~~-~~~~ 471 (625)
+++.+.+... ..+...+++++.++.+.-. ++..++.. +.......+.+.+..+.+++.+.+.++ .+.+
T Consensus 655 nW~es~i~Gi--~rwl~riw~l~~~~~~ar~-------~g~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~sl 725 (876)
T KOG0435|consen 655 NWNESAIPGI--KRWLQRIWALVSQILQARD-------DGKAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSL 725 (876)
T ss_pred ccccccchhH--HHHHHHHHHHHHHHHHHHh-------cCCcccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999888775 4667777777777665421 12221111 122344566799999999999999996 6779
Q ss_pred HHHHHHHHHHHHHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 472 KQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 472 ~~a~~~i~~l~~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
+.|+..+|.|.+...+-.....-| ++ ....++..+.++|+|++||+|+|+|..|+-
T Consensus 726 NtaIS~~m~ltN~l~~a~k~~~~h-----~~--------~~~~al~~lv~mlaP~aPh~asE~Ws~l~~ 781 (876)
T KOG0435|consen 726 NTAISDMMGLTNALKKALKIVLVH-----SP--------EFERALEALVIMLAPFAPHVASELWSALAN 781 (876)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhc-----Ch--------HHHHHHHHHHHHHhccCchhHHHHHHHHhc
Confidence 999999999987654433322211 11 112245678899999999999999999984
No 45
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-56 Score=466.38 Aligned_cols=501 Identities=20% Similarity=0.272 Sum_probs=386.7
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc-CC------------
Q 006917 22 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE-NC------------ 88 (625)
Q Consensus 22 ~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-g~------------ 88 (625)
.++++|....+||.++|-||-||+...+| .|++.||..+.||.|..-.|||+||+|++-...+. |+
T Consensus 35 k~rp~ftFyDGPPFATGlPHyGHiLa~TI-KDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~ 113 (1070)
T KOG0434|consen 35 KGRPKFTFYDGPPFATGLPHYGHILASTI-KDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGID 113 (1070)
T ss_pred CCCCceeeccCCccccCCCccchhhhhhH-HHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHHHHHHhHH
Confidence 57778999999999999999999999888 99999999999999999999999999999766442 33
Q ss_pred ----CHHHHHHHHHHHHHHHHhhcC--cccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCcccccccc
Q 006917 89 ----TTQQICDKYYAIHKAVYNWFN--ISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLV 162 (625)
Q Consensus 89 ----~~~~~~~~~~~~~~~~~~~lg--i~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v 162 (625)
.|+.++-.|+.++++...+|| |+||+-|+|+.+.+.+.|+++|++|+++|++|++.....|++.|.+.|+.-+.
T Consensus 114 kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~TPLSNFEa 193 (1070)
T KOG0434|consen 114 KYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFEA 193 (1070)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCceecceeeeccccccCCcccchhc
Confidence 578899999999999999999 67888899999999999999999999999999999999999999999987653
Q ss_pred cc----------------------------CCCC----------------------------------------------
Q 006917 163 EG----------------------------SCPT---------------------------------------------- 168 (625)
Q Consensus 163 ~g----------------------------~cp~---------------------------------------------- 168 (625)
.. |.|+
T Consensus 194 ~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~ 273 (1070)
T KOG0434|consen 194 QQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKNDN 273 (1070)
T ss_pred ccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhcCccccc
Confidence 21 3333
Q ss_pred ------------CccccC-----------------------------------CCCCc------------------cc--
Q 006917 169 ------------LGCNYD-----------------------------------SARGD------------------QC-- 181 (625)
Q Consensus 169 ------------~~c~~~-----------------------------------~~~g~------------------~c-- 181 (625)
.|-.|+ .++|. .|
T Consensus 274 ~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpV 353 (1070)
T KOG0434|consen 274 YEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPV 353 (1070)
T ss_pred HHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCcc
Confidence 000000 00110 01
Q ss_pred -----------cccCCCCCCCc--------------------cCCCccccCCCccEEEeccceeeeccchHHHHHHHHHh
Q 006917 182 -----------EKCGKLLNPTE--------------------LKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINK 230 (625)
Q Consensus 182 -----------e~cg~~~~~~~--------------------l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~ 230 (625)
+-.|+++...| ..+|.|||+.+|++.+...+||.+.....+++++-..+
T Consensus 354 De~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~~ 433 (1070)
T KOG0434|consen 354 DESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNMK 433 (1070)
T ss_pred ccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhHHHHHHHHHhcccc
Confidence 11222222111 25799999999999999999999999999998888777
Q ss_pred CCCCCCCChhHH-HHHHHHHhcCCCCcccccccCCCcccCCCCC------------------------------------
Q 006917 231 MSVSGSWSQNAI-QGTYAWLKDGLKPRCITRDLKWGVPVPHEKF------------------------------------ 273 (625)
Q Consensus 231 ~~~~~~~~~~~~-~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~------------------------------------ 273 (625)
..|.| .+++ .+..+||++ .+||.|||+|.||+|||.|-.
T Consensus 434 t~WVP---~~ikeKRF~NWL~n-ARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kItDlHRe~iD~itI 509 (1070)
T KOG0434|consen 434 THWVP---QNIKEKRFANWLKN-ARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLHRESIDHITI 509 (1070)
T ss_pred cccCC---hhhhHHHHHHHHhh-hhhcccccccccCCCcceEEccCCceEEEeccHHHHHHhcCCcchhhhhhhcCceec
Confidence 76654 3332 367899974 899999999999999999721
Q ss_pred -----------CCceeeeeccccch-HHHhccCCC----hhhHhhcCCCCCcceEEEEeeccc--chhHhHHHHHhhcCC
Q 006917 274 -----------KDKVFYVWFDAPIG-YISITSCYT----PDWEEWWKNPENVALYQFMGKDNA--PFHTVMFPSTLLGTE 335 (625)
Q Consensus 274 -----------~~~viyvWfDa~~~-yi~~~~~~~----~~~~~~w~~p~d~~~i~~~GkD~~--~fH~~~~pa~l~a~~ 335 (625)
-..|++.||++..- |.+. .|| +.|++-+| +| .-..|-|+. ||.+..--+.++- |
T Consensus 510 ps~~gkg~l~Rv~eVfDCWFESGSMPYAq~--HyPFenk~~fe~~fP--ad---FIaEGlDQTRGWFYTL~VlsT~LF-~ 581 (1070)
T KOG0434|consen 510 PSKKGKGVLHRVSEVFDCWFESGSMPYAQR--HYPFENKEEFEENFP--AD---FIAEGLDQTRGWFYTLLVLSTALF-G 581 (1070)
T ss_pred ccCCCCcceehhhhHhhhhhccCCCcchhh--cCCccchHHHhhcCc--hH---hhhhccccccchhhHHHHHHHHHc-C
Confidence 12688999998543 3332 232 45666664 45 455689996 6877654433222 3
Q ss_pred CCccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCC--CCCCCCcCHHHHHHHHhHHHHHH
Q 006917 336 ENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRP--EVSDTLFTWEDFQAKLNTELLNN 412 (625)
Q Consensus 336 ~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~--~~~d~~fs~~~~~~~~n~~l~~~ 412 (625)
.+++++++++|.|+ .||+|||||+.|.-+|..+++ +||+|+||+||++ +| ....+.|..+.+.+.. ++..-.
T Consensus 582 --kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iin-kYGADalRlYLIn-SPVvraE~LkFkeeGVrevv-k~v~lP 656 (1070)
T KOG0434|consen 582 --KPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIIN-KYGADALRLYLIN-SPVVRAENLKFKEEGVREVV-KDVLLP 656 (1070)
T ss_pred --CCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHH-hhcchheeeeeec-CccccccccccchhhHHHHH-Hhhhhh
Confidence 36899999999987 799999999999999999998 8999999999997 44 3688999999999876 455556
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHhHHHHh
Q 006917 413 LGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISS-EGNAYLQE 491 (625)
Q Consensus 413 l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~-~~N~y~~~ 491 (625)
++|.+++............-....++......+-+|+|+++..+.++.-+++.|+.|++..++-.+..|+. .+|+|++.
T Consensus 657 W~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwYiR~ 736 (1070)
T KOG0434|consen 657 WYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRF 736 (1070)
T ss_pred hhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHHHHhhhhheeh
Confidence 78887776665432100000001111111234568999999999999999999999999999999999996 49999987
Q ss_pred ccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 492 SQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 492 ~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
++...-..+....+..++.++.++|..+.++|+||.|+++|.||+.|..
T Consensus 737 nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~ 785 (1070)
T KOG0434|consen 737 NRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKK 785 (1070)
T ss_pred hhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh
Confidence 7632111234466777889999999999999999999999999999864
No 46
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.3e-53 Score=453.94 Aligned_cols=386 Identities=16% Similarity=0.160 Sum_probs=279.2
Q ss_pred CCCcccccCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeec----------cCcccc
Q 006917 7 EPDGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYIC----------GTDEYG 76 (625)
Q Consensus 7 ~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~----------g~D~~G 76 (625)
.-|++++++++|+|...+ ++-+.++.||||+++||||+|+ +|.+|+++||++..||+|.|++ |+|+||
T Consensus 5 lyntlt~~ke~f~p~~~~-~v~mYvCGpTvy~~~HiGhar~-~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~d 82 (490)
T PRK14536 5 LYNTLGRQQEEFQPIEHG-HVRLYGCGPTVYNYAHIGNLRT-YVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGE 82 (490)
T ss_pred EEecCCCCeeccccCCCC-ceEEEeeCCccCCCcccchhHH-HHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCC
Confidence 348999999999997543 4556677789999999999998 6789999999999999999997 566669
Q ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCcc
Q 006917 77 TATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRF 156 (625)
Q Consensus 77 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~ 156 (625)
+||+.+|++.|++|++++++|.+.|.+++++|||.++.++ ++.++|...+++++++|.++|++|++.+.||||+..
T Consensus 83 dKii~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~--- 158 (490)
T PRK14536 83 DKMVKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT--- 158 (490)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc---
Confidence 9999999999999999999999999999999999987655 455799999999999999999999999999999963
Q ss_pred ccccccccCCCCCccccCCCCCccccccCCC--CCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCC-C
Q 006917 157 LADRLVEGSCPTLGCNYDSARGDQCEKCGKL--LNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMS-V 233 (625)
Q Consensus 157 l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~--~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~ 233 (625)
||. ||++ .+..++.. |..+..... ++++ .
T Consensus 159 ---------~~~---------------YG~Ls~~~~~~l~~------g~~v~~~~~------------------K~np~D 190 (490)
T PRK14536 159 ---------FPS---------------YGSLASAAVEDLQA------GARIEHDTN------------------KRNPHD 190 (490)
T ss_pred ---------ccc---------------hhhhcCCCHHHhhc------CCcCCCCCC------------------CCCchh
Confidence 222 2221 01111111 221110000 0111 1
Q ss_pred CCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEE
Q 006917 234 SGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQ 313 (625)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~ 313 (625)
+.-|.. ..+++...++++.+||.+.|+|. +.+.+ .-.+|.....| ||
T Consensus 191 FaLWK~----------~~~~~~~~~~W~SpWG~GRPGWH-------------IECsa-------Ms~~~lg~~~D---IH 237 (490)
T PRK14536 191 FVLWFT----------RSKFENHALTWDSPWGRGYPGWH-------------IECSA-------MSMKYLGEQCD---IH 237 (490)
T ss_pred chhccc----------ccCCCCCCCcccCCCCCCCCChH-------------HHHHH-------HHHHHcCCcee---EE
Confidence 111221 12234456788999999999872 22221 12233333345 99
Q ss_pred EEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCC
Q 006917 314 FMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSD 393 (625)
Q Consensus 314 ~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d 393 (625)
++|+|++|||+.+++|+..++.. .++++.++++|+|+++|+|||||+||+|+++|+++..|+++++||++++ +++.++
T Consensus 238 ~GG~DliFPHHeneiAqs~a~~g-~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls-~~yr~~ 315 (490)
T PRK14536 238 IGGVDHIRVHHTNEIAQCEAATG-KPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLG-GHYRSQ 315 (490)
T ss_pred eccccCCCcchhhHHHHHHHhcC-CCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHh-CCCCCC
Confidence 99999999999999999998632 2467888888999999999999999999999999845999999999998 999999
Q ss_pred CCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-HhccHH
Q 006917 394 TLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAM-EKVKLK 472 (625)
Q Consensus 394 ~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~ 472 (625)
++||++.+.++. +...++.+++.++...... ...+................+...+..+.+.+.++| ++|+++
T Consensus 316 l~Fs~e~l~~a~--~~~~rl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp 389 (490)
T PRK14536 316 LAFSWEALKTAK--AARRSLVRRVARVVDAARA----TTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTP 389 (490)
T ss_pred CCCCHHHHHHHH--HHHHHHHHHHHHHHHhhhc----ccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChH
Confidence 999999999874 3455666666665432211 000000000000000000001123445678899999 699999
Q ss_pred HHHHHHHHHHHHHhH
Q 006917 473 QGLRIGMSISSEGNA 487 (625)
Q Consensus 473 ~a~~~i~~l~~~~N~ 487 (625)
.|+..|+++++.+|.
T Consensus 390 ~Al~~l~~~~~~~n~ 404 (490)
T PRK14536 390 KALSELQKLVKDTSV 404 (490)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999988774
No 47
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=9.2e-53 Score=453.29 Aligned_cols=380 Identities=13% Similarity=0.089 Sum_probs=289.1
Q ss_pred CCCcccccCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc
Q 006917 7 EPDGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE 86 (625)
Q Consensus 7 ~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~ 86 (625)
.-|++++++++|.|..++ ++-+.++.|||+|.+||||+|+ +|.+|+++||++..||+|.|++|+||||+||+.+|++.
T Consensus 62 lyNTltr~ke~f~P~~~~-~v~~Y~CGpTvYd~~HIGhaR~-~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~ 139 (557)
T PLN02946 62 LYNTMSRKKELFKPKVEG-KVGMYVCGVTAYDLSHIGHARV-YVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANEL 139 (557)
T ss_pred EEECCCCCeeccccCCCC-ceeEEEeCCccCCCCccccchh-hHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHc
Confidence 348999999999997543 2444455689999999999997 57799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCC
Q 006917 87 NCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSC 166 (625)
Q Consensus 87 g~~~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~c 166 (625)
|++|++++++|.+.|.+++++|||. +.+++|+.++|...+++++++|+++|++|++.+.||||++.-.-|
T Consensus 140 g~~~~ela~~y~~~f~~d~~~LnI~-~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~~Y--------- 209 (557)
T PLN02946 140 GEDPISLSRRYCEEFLSDMAYLHCL-PPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEY--------- 209 (557)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCC-CCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcchhh---------
Confidence 9999999999999999999999998 667778888999999999999999999999999999998753322
Q ss_pred CCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCC-CCCCCChhHHHHH
Q 006917 167 PTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMS-VSGSWSQNAIQGT 245 (625)
Q Consensus 167 p~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 245 (625)
|... ++.+ .++ ..|..++..+. ++++ ++.-|...
T Consensus 210 -----------G~Ls---~~~l--~~l------~~g~rv~~~~~------------------K~np~DFaLWK~~----- 244 (557)
T PLN02946 210 -----------GKLS---GRKL--EDN------RAGERVAVDSR------------------KKNPADFALWKAA----- 244 (557)
T ss_pred -----------hhcC---CCCh--hHh------hcCCCCCcccc------------------cCCccccceeccC-----
Confidence 2110 1100 111 11332221110 1111 12223321
Q ss_pred HHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccchhHh
Q 006917 246 YAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTV 325 (625)
Q Consensus 246 ~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~ 325 (625)
+.|. ++.+.+||...|+|. |-+ ...-.++...+.| ||.+|.|++|+|+.
T Consensus 245 ----k~ge----~~W~SPWG~GRPGWH----------------IEC----SaMs~~~lG~~~D---IH~GG~DL~FPHHE 293 (557)
T PLN02946 245 ----KEGE----PFWDSPWGPGRPGWH----------------IEC----SAMSAAYLGHSFD---IHGGGMDLVFPHHE 293 (557)
T ss_pred ----CCCC----CCccCCCCCCCCcHH----------------HHH----HHHHHHHcCCCee---EeccccccCCCccc
Confidence 1222 234789999999983 321 1122334443456 99999999999999
Q ss_pred HHHHHhhcC-CCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHH
Q 006917 326 MFPSTLLGT-EENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAK 404 (625)
Q Consensus 326 ~~pa~l~a~-~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~ 404 (625)
+..|+..++ |. +..+.+++||||+++|+|||||+||+|++.|+++ .|++|++|||+++ .++.++++||++.+.++
T Consensus 294 NEiAQsea~~g~--~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~-~y~~dalR~~lLs-~hyr~~l~fs~e~L~~a 369 (557)
T PLN02946 294 NEIAQSCAACCD--SNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVID-LYHPLALRLFLLG-THYRSPINYSDVQLESA 369 (557)
T ss_pred chHHHHHHHhCC--CCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHH-hcCccceeeeeec-cCCCCCcEecHHHHHHH
Confidence 999998875 43 3456888889999999999999999999999998 7999999999998 78999999999998876
Q ss_pred HhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Q 006917 405 LNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAM-EKVKLKQGLRIGMSISS 483 (625)
Q Consensus 405 ~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~~a~~~i~~l~~ 483 (625)
.....++.++++|+.+.+.+. ... .... . ....+...+..+.+.+.++| ++|+++.|+..|+++++
T Consensus 370 --~~~l~~l~~~~~~~~~~l~~~----~~~-~~~~---~---~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk 436 (557)
T PLN02946 370 --SERIFYIYQTLHDCEESLQQH----DST-FEKD---S---VPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLK 436 (557)
T ss_pred --HHHHHHHHHHHHHHHHHhhhh----ccc-cccc---c---cchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 566778999999987766531 110 0000 0 00112334556778899999 69999999999999999
Q ss_pred HHhHHHHh
Q 006917 484 EGNAYLQE 491 (625)
Q Consensus 484 ~~N~y~~~ 491 (625)
.+|.+++.
T Consensus 437 ~~N~~~~~ 444 (557)
T PLN02946 437 TINDLLHT 444 (557)
T ss_pred HHHHHhhh
Confidence 99999864
No 48
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.8e-51 Score=445.36 Aligned_cols=368 Identities=17% Similarity=0.197 Sum_probs=280.5
Q ss_pred CCCcccccCCCCCCCCC-CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHH
Q 006917 7 EPDGERNHRVAKLPVPG-KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAME 85 (625)
Q Consensus 7 ~~~~~~~~~~~~~p~~~-~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~ 85 (625)
.-|++++++++|.|..+ ..++||| .|||||++||||+|+ ++.+|+++||+|++|++|.|++|+||||+||+.+|++
T Consensus 5 ~~ntl~~~~~~f~p~~~~~v~~yvc--gPtvy~~~HiGHar~-~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~ 81 (463)
T PRK00260 5 IYNTLTRQKEEFKPLEPGKVKMYVC--GPTVYDYAHIGHARS-FVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANE 81 (463)
T ss_pred EEECCCCceeecccCCCCcceEEEe--CCccCCCcccccchh-HHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHH
Confidence 34899999999999754 3445544 457889999999998 5679999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcCc-ccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCcccccccccc
Q 006917 86 ENCTTQQICDKYYAIHKAVYNWFNI-SFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEG 164 (625)
Q Consensus 86 ~g~~~~~~~~~~~~~~~~~~~~lgi-~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g 164 (625)
.|++|+++++++.+.|++++++||| .+|.+.+++ .|...+++++++|.++|++|++.++++||++.-..|+
T Consensus 82 ~g~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg------ 153 (463)
T PRK00260 82 EGESIKELTERYIAAFHEDMDALNVLPPDIEPRAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDYG------ 153 (463)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEecccccccc------
Confidence 9999999999999999999999999 567787777 6999999999999999999999999999998543322
Q ss_pred CCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCC-CCCCCChhHHH
Q 006917 165 SCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMS-VSGSWSQNAIQ 243 (625)
Q Consensus 165 ~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~ 243 (625)
. ++..++.+. ..|..+.... . ++++ .+.-|...
T Consensus 154 --------------~--------ls~~~~~~~---~~~~~~~~~~----------~--------K~~~~DF~Lwk~~--- 187 (463)
T PRK00260 154 --------------K--------LSGRNLDEL---QAGARVEVAE----------E--------KRDPLDFALWKAA--- 187 (463)
T ss_pred --------------c--------CCCCCHHHH---hccCcCCccc----------C--------CCCccccceecCC---
Confidence 1 111110000 0122211000 0 1111 12223321
Q ss_pred HHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccchh
Q 006917 244 GTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFH 323 (625)
Q Consensus 244 ~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH 323 (625)
+.|.. .-..+||...|+|. |- +...-.++...+.| ||.+|+|++|+|
T Consensus 188 ------~~~~~----~w~s~~g~grpgWh----------------ie----csam~~~~lg~~~D---ih~gG~DlifpH 234 (463)
T PRK00260 188 ------KPGEP----SWESPWGKGRPGWH----------------IE----CSAMSTKYLGETFD---IHGGGADLIFPH 234 (463)
T ss_pred ------CCCCC----CCCCCCCCCCCChh----------------HH----HHHHHHHhcCCCcc---eecCccccCCCc
Confidence 01212 23568999999883 21 11111223344567 999999999999
Q ss_pred HhHHHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHH
Q 006917 324 TVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQA 403 (625)
Q Consensus 324 ~~~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~ 403 (625)
+.+..|+..++... ++++.++++|+|+++|+|||||+||+|++.|+++ .||+|++|||+++ +++.++++|+++.+.+
T Consensus 235 h~neiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~-~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~ 311 (463)
T PRK00260 235 HENEIAQSEAATGK-PFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLK-KYDPEVLRFFLLS-AHYRSPLNFSEEALEQ 311 (463)
T ss_pred hHhHHHHHHHhcCC-CcceEEEEccEEccCCCcccCcCCCCCCHHHHHH-HcCchHhHHHHHh-CCCCCCCccCHHHHHH
Confidence 99998887664322 3445566669999999999999999999999998 7999999999997 7888999999999887
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHH
Q 006917 404 KLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAM-EKVKLKQGLRIGMSIS 482 (625)
Q Consensus 404 ~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~~a~~~i~~l~ 482 (625)
. ....++++|+++++.. . ..|.+++..+..+.+.+.++| ++|+++.|+..|++++
T Consensus 312 a--~~~~~rl~~~~~~~~~---~-------------------~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv 367 (463)
T PRK00260 312 A--KKALERLYNALAETAL---G-------------------EDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELA 367 (463)
T ss_pred H--HHHHHHHHHHHHHhhh---c-------------------cchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 6 4557788888776531 0 123467788888999999999 5999999999999999
Q ss_pred HHHhHHHHh
Q 006917 483 SEGNAYLQE 491 (625)
Q Consensus 483 ~~~N~y~~~ 491 (625)
+..|+|++.
T Consensus 368 ~~~n~~~~~ 376 (463)
T PRK00260 368 REINRALET 376 (463)
T ss_pred HHHHHHhhc
Confidence 999999875
No 49
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=3.4e-51 Score=441.85 Aligned_cols=367 Identities=16% Similarity=0.167 Sum_probs=275.4
Q ss_pred CCcccccCCCCCCCC-CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc
Q 006917 8 PDGERNHRVAKLPVP-GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE 86 (625)
Q Consensus 8 ~~~~~~~~~~~~p~~-~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~ 86 (625)
-|++++++++|.|.. ++.++|+|. |||||.+||||+|+ +|.+|+++||+|++||+|.|++|+||||+||+.+|+++
T Consensus 4 yntlt~~~e~f~p~~~~~v~~yvcg--ptvy~~~HiGhar~-~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~ 80 (465)
T TIGR00435 4 YNTLTRQKEEFEPLVQGKVKMYVCG--PTVYDYCHIGHART-AIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRAREN 80 (465)
T ss_pred EeCCCCCeeccccCCCCcceEEEec--CccCCCcccccchH-HHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHc
Confidence 489999999999975 444455444 58889999999998 67799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcccccc-cCCCChhHHHHHHHHHHHHHHCCCEEEee-eeeeeeCCCCcccccccccc
Q 006917 87 NCTTQQICDKYYAIHKAVYNWFNISFDEF-GRTSTPQQTEICQAIFKKLLENNWLSEYT-TQQLYCDTCKRFLADRLVEG 164 (625)
Q Consensus 87 g~~~~~~~~~~~~~~~~~~~~lgi~~D~~-~~t~~~~~~~~v~~~~~~L~~~G~iy~~~-~~~~y~~~~~~~l~~~~v~g 164 (625)
|++|+++++.+.+.|++++++|||++|.+ .+++ .|...+++++++|.++|++|++. +.+|||+.|...+..
T Consensus 81 g~~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT--~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG~----- 153 (465)
T TIGR00435 81 GESVYEVSERFIEAYFEDMKALNVLPPDLEPRAT--EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGK----- 153 (465)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcCCcccc--ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchhcc-----
Confidence 99999999999999999999999999975 4544 79999999999999999999998 999999987543221
Q ss_pred CCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCC-CCCCCChhHHH
Q 006917 165 SCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMS-VSGSWSQNAIQ 243 (625)
Q Consensus 165 ~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~ 243 (625)
.. ++ +..++. .|..++. ..+ ++++ .+.-|...
T Consensus 154 ---------------ls---~~--~~~~~~------~~~~~~~----------~~~--------K~~p~DF~Lwk~~--- 186 (465)
T TIGR00435 154 ---------------LS---KQ--DLDQLE------AGARVDV----------DEA--------KRNKLDFVLWKSS--- 186 (465)
T ss_pred ---------------CC---CC--CHHHHh------cccccCc----------ccc--------cCCCCCceeeCCC---
Confidence 00 00 000010 0111110 000 1111 12223321
Q ss_pred HHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccchh
Q 006917 244 GTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFH 323 (625)
Q Consensus 244 ~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH 323 (625)
+.|. ++.+.+||...|+|..+ ++..-.++...+.| ||.+|.|++|+|
T Consensus 187 ------~~~~----~~w~spwG~grpgWhie--------------------csam~~~~lg~~~D---ih~gG~Dl~fpH 233 (465)
T TIGR00435 187 ------KEGE----PKWDSPWGKGRPGWHIE--------------------CSAMNDKYLGDQID---IHGGGVDLIFPH 233 (465)
T ss_pred ------CCCC----CCCcCCCCCCCCCcHhH--------------------HHHHHHHhcCCCce---eeccccccccch
Confidence 1121 34467999999998322 11111223333566 999999999999
Q ss_pred HhHHHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHH
Q 006917 324 TVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQA 403 (625)
Q Consensus 324 ~~~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~ 403 (625)
+.+..|+..++.. .++++.++++|||+++|+|||||+||+|++.|+++ .|++|++|||+++ .++.++++||++.+.+
T Consensus 234 hene~aqs~a~~g-~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~-~~~~dalR~~ll~-~~~~~~l~fs~~~l~~ 310 (465)
T TIGR00435 234 HENEIAQSEAAFG-KQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLK-NYDPEILRYFLLS-VHYRSPLDFSEELLEA 310 (465)
T ss_pred HHHHHHHHHHhcC-CCCCcEEEEeeEEEecCccccccCCCcCCHHHHHH-HCCHHHHHHHHHh-CCCCCCCccCHHHHHH
Confidence 9999999887532 24667778889999999999999999999999998 7999999999997 6889999999999988
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHH
Q 006917 404 KLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAM-EKVKLKQGLRIGMSIS 482 (625)
Q Consensus 404 ~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~~a~~~i~~l~ 482 (625)
+ ....+++.|+++++...... .. ..+. . +......+.+.+.++| ++++++.|+..|++++
T Consensus 311 a--~~~~~rl~~~~~~~~~~~~~----~~--~~~~----~-------~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~ 371 (465)
T TIGR00435 311 A--KNALERLYKALRVLDTTLAY----SG--NQSL----N-------KFPDEKEFEARFVEAMDDDLNTANALAVLFELA 371 (465)
T ss_pred H--HHHHHHHHHHHHHHHhhhcc----cc--cccc----c-------cchhHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Confidence 7 46688999998887543221 00 0000 0 0111234557788899 7999999999999999
Q ss_pred HHHh
Q 006917 483 SEGN 486 (625)
Q Consensus 483 ~~~N 486 (625)
+.+|
T Consensus 372 ~~~n 375 (465)
T TIGR00435 372 KSIN 375 (465)
T ss_pred HHhh
Confidence 9988
No 50
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.6e-51 Score=433.81 Aligned_cols=380 Identities=17% Similarity=0.176 Sum_probs=278.6
Q ss_pred CCCcccccCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCccc----------c
Q 006917 7 EPDGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEY----------G 76 (625)
Q Consensus 7 ~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~----------G 76 (625)
.-|++++++++|.|. + ++-+.++.|||++.+||||+|+ +|.+|+++||++.+|++|.|++|++|. |
T Consensus 5 lynTltr~ke~f~p~-~--~v~mY~CGpTVYd~~HiGh~r~-~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gd 80 (481)
T PRK14534 5 LYNTKTKDLSELKNF-S--DVKVYACGPTVYNYAHIGNFRT-YIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGE 80 (481)
T ss_pred EEEcCCCCeeecccC-C--ceEEEeCCCCCCCCCCccchhH-HHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCC
Confidence 348999999999996 3 4566677789999999999997 677999999999999999996555555 9
Q ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCcc
Q 006917 77 TATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRF 156 (625)
Q Consensus 77 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~ 156 (625)
+||+.+|+++|++|++++++|.+.|.+++++|||.++.+++| .++|...+++++++|.++|++|+..+.||||+.+-
T Consensus 81 dKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~-- 157 (481)
T PRK14534 81 DKVVKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF-- 157 (481)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEecccc--
Confidence 999999999999999999999999999999999999988876 57999999999999999999999999999999862
Q ss_pred ccccccccCCCCCccccCCCCCccccccCCCCCCCccCC-CccccCCCccEEEeccceeeeccchHHHHHHHHHhCC-CC
Q 006917 157 LADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKD-PRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMS-VS 234 (625)
Q Consensus 157 l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~-~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~ 234 (625)
|. ||... | .++.+ +.|. |..+. +.. .++++ .+
T Consensus 158 --------------~~----YG~ls---~-----~~l~~l~~~~--~~~v~----------~~~--------~K~np~DF 191 (481)
T PRK14534 158 --------------KS----YGQMA---G-----INLNDFKDMS--VSRVE----------IDK--------SKRNKSDF 191 (481)
T ss_pred --------------cc----hhhhc---C-----CCHHHHhhhc--cCcCC----------ccc--------CCCCcccc
Confidence 21 22211 1 11111 1111 11111 100 01111 11
Q ss_pred CCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEE
Q 006917 235 GSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQF 314 (625)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~ 314 (625)
.-|. ..+++.+..++++.+||...|+| +|-+.. ...+.+|. ..| ||+
T Consensus 192 aLWK----------~~~~~~~~~~~w~spWG~GrPgW----------------HiECsa---m~~~~lg~-~~D---IH~ 238 (481)
T PRK14534 192 VLWF----------TNSKFKDQEMKWDSPWGFGYPSW----------------HLECAA---MNLEYFKS-TLD---IHL 238 (481)
T ss_pred hhcC----------cCCcCCCCCCeecCCCCCcCCcH----------------HHHHHH---HHHHHcCC-cce---EEe
Confidence 1122 12345667789999999999988 232110 11233342 356 999
Q ss_pred EeecccchhHhHHHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCC
Q 006917 315 MGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDT 394 (625)
Q Consensus 315 ~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~ 394 (625)
+|+|++|||+.+++|+..++.. .++++.++++|||+++|+|||||+||+|+++|+++..++++++|||+++ +++.+++
T Consensus 239 GG~DliFPHHene~Aqs~a~~g-~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls-~~yr~~l 316 (481)
T PRK14534 239 GGVDHIGVHHINEIAIAECYLN-KKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLT-AHYRTQL 316 (481)
T ss_pred cccccCCCcchhHHHHHhhhcC-CCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHh-CCCCCCC
Confidence 9999999999999999988642 3577889999999999999999999999999999855999999999998 9999999
Q ss_pred CcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-HhccHHH
Q 006917 395 LFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAM-EKVKLKQ 473 (625)
Q Consensus 395 ~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~~ 473 (625)
+||++.+.++. ....++.+.++++...+.. .++..... ..... .......+.+.+.+|| ++++++.
T Consensus 317 ~Fs~e~l~~a~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~---~~~~~~~~~~~f~~Al~DDlNtp~ 383 (481)
T PRK14534 317 KFTFNNLKACK--IARENMLNKLTYFYSSLDQ-----FDLNLLNK---DLENI---EFSLEKEYYDSFLEKIAFDLNIPQ 383 (481)
T ss_pred CCCHHHHHHHH--HHHHHHHHHHHHHHHhhhh-----cccccccc---ccccc---hhhhHHHHHHHHHHHHhhcCChHH
Confidence 99999999873 3445555555544332221 00000000 00000 0011234556888999 6999999
Q ss_pred HHHHHHHHHHHHhH
Q 006917 474 GLRIGMSISSEGNA 487 (625)
Q Consensus 474 a~~~i~~l~~~~N~ 487 (625)
|+..|+++++..|.
T Consensus 384 Al~~l~~~~k~~n~ 397 (481)
T PRK14534 384 GLALLWDIIKDDNL 397 (481)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
No 51
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-50 Score=418.48 Aligned_cols=369 Identities=18% Similarity=0.214 Sum_probs=280.0
Q ss_pred CCcccccCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcC
Q 006917 8 PDGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEEN 87 (625)
Q Consensus 8 ~~~~~~~~~~~~p~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 87 (625)
-|++++.+++|+|...++ +-+..+.|||++.+||||+|+ +|..|+++||++.+||.|.||.+++|.++||+.+|.+.|
T Consensus 5 yNTltr~ke~F~P~~~~~-V~mYvCGpTVYd~~HIGhaRt-~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g 82 (464)
T COG0215 5 YNTLTRQKEEFVPIDPGK-VKMYVCGPTVYDYAHIGHART-YVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEG 82 (464)
T ss_pred EecCccceecccCCCCCe-EEEEecCCccCCccccccCcc-eehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhC
Confidence 489999999999976543 555566789999999999998 567999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCc-ccccccCCCChhHHHHHHHHHHHHHHCCCEEEe-eeeeeeeCCCCccccccccccC
Q 006917 88 CTTQQICDKYYAIHKAVYNWFNI-SFDEFGRTSTPQQTEICQAIFKKLLENNWLSEY-TTQQLYCDTCKRFLADRLVEGS 165 (625)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~lgi-~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~-~~~~~y~~~~~~~l~~~~v~g~ 165 (625)
.++.++++++.++|.+++++||| .+|.+.|.| +|...+.+++++|.++|++|.. .+.|+|+++.-..|+.-
T Consensus 83 ~~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraT--e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~L----- 155 (464)
T COG0215 83 LSIREVAERYIAAFFEDMDALNVLPPDIEPRAT--EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKL----- 155 (464)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCCcccCcHh--hCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhh-----
Confidence 99999999999999999999999 568787766 8999999999999999999998 67999999854433210
Q ss_pred CCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCC-CCCCCChhHHHH
Q 006917 166 CPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMS-VSGSWSQNAIQG 244 (625)
Q Consensus 166 cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 244 (625)
.|+. +-+++. .|..+..... ++++ .+.-|...
T Consensus 156 ------------------S~~~-~le~l~------~gar~~~~~~------------------Krnp~DFvLWK~s---- 188 (464)
T COG0215 156 ------------------SGRD-SLEELQ------AGARVEVDEE------------------KRNPLDFVLWKAA---- 188 (464)
T ss_pred ------------------cCCC-ChhHHh------hccccccccc------------------cCCchhheeeccC----
Confidence 0000 000000 1111111111 0111 11122221
Q ss_pred HHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccchhH
Q 006917 245 TYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHT 324 (625)
Q Consensus 245 ~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~ 324 (625)
+.|.+. .+++||...|+|..+..+| -.++..+..| ||.+|.|++|+|+
T Consensus 189 -----k~gEp~----W~SPWG~GRPGWHIECSaM--------------------~~~~LG~~~D---IHgGG~DLiFPHH 236 (464)
T COG0215 189 -----KPGEPS----WDSPWGKGRPGWHIECSAM--------------------STKYLGETFD---IHGGGSDLIFPHH 236 (464)
T ss_pred -----CCCCCC----CCCCCCCCCCchhHHHHHH--------------------HHHHhCCCcc---eecCcccccCCCc
Confidence 123333 4789999999994322221 2223333456 9999999999999
Q ss_pred hHHHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHH
Q 006917 325 VMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAK 404 (625)
Q Consensus 325 ~~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~ 404 (625)
....|+..++....+..+.++++|||+++|+|||||+||+|++.|+++ .|++++|||+|++ +++.++++||.+.+.++
T Consensus 237 ENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~-~~~p~~lR~~lls-~HYR~pl~fsee~L~~A 314 (464)
T COG0215 237 ENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLK-KYDPEVLRLFLLS-SHYRSPLDFSEELLEEA 314 (464)
T ss_pred ccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHh-hcCHHHHHHHHHH-HHhCCccccCHHHHHHH
Confidence 999999998765223467888889999999999999999999999998 7999999999998 99999999999999987
Q ss_pred HhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Q 006917 405 LNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAM-EKVKLKQGLRIGMSISS 483 (625)
Q Consensus 405 ~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~~a~~~i~~l~~ 483 (625)
.....++.+++.++...... . .. ..+..+..++.++| ++|+++.|+..|+++++
T Consensus 315 --~~~l~rl~~~~~~~~~~~~~------------~---~~--------~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~ 369 (464)
T COG0215 315 --KKALERLYNALRRLRDLAGD------------A---EL--------ADLKEFEARFREALDDDFNTPKALAVLFELAK 369 (464)
T ss_pred --HHHHHHHHHHHHHHHhhccc------------c---cc--------chhHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 55677788887776522211 0 00 03345566788899 79999999999999999
Q ss_pred HHhHHHHh
Q 006917 484 EGNAYLQE 491 (625)
Q Consensus 484 ~~N~y~~~ 491 (625)
..|...+.
T Consensus 370 ~~~~~~~~ 377 (464)
T COG0215 370 EINRLLEE 377 (464)
T ss_pred HHhhhhhc
Confidence 88665543
No 52
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.1e-50 Score=435.79 Aligned_cols=365 Identities=15% Similarity=0.159 Sum_probs=274.5
Q ss_pred CCcccccCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcC
Q 006917 8 PDGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEEN 87 (625)
Q Consensus 8 ~~~~~~~~~~~~p~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 87 (625)
-|++++++++|.|..++ ++-+.++.|||++.+||||+|+ +|.+|+++||+++.||+|.|++|+||||+||+.+|++.|
T Consensus 231 yNTltr~ke~f~P~~~~-~V~mYvCGPTVYd~~HIGHaRt-~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G 308 (699)
T PRK14535 231 YNTLTRQKEPFAPIDPE-NVRMYVCGMTVYDYCHLGHARV-MVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENG 308 (699)
T ss_pred EECCCCCeeccccCCCC-ceEEEecCCcCCCCCcccchhH-HHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcC
Confidence 48999999999997543 4556677789999999999998 577999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEee-eeeeeeCCCCccccccccccCC
Q 006917 88 CTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYT-TQQLYCDTCKRFLADRLVEGSC 166 (625)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~-~~~~y~~~~~~~l~~~~v~g~c 166 (625)
+++++++++|.+.|.+++++|||.++.+ +|+..+|...+++++++|.++|++|++. +.||||+++-.-
T Consensus 309 ~sp~ela~~y~~~F~~d~~~LnI~~p~~-~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~~---------- 377 (699)
T PRK14535 309 ETIGELTARFIQAMHEDADALGVLRPDI-EPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAA---------- 377 (699)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCcE-eeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccccc----------
Confidence 9999999999999999999999999876 5667799999999999999999999874 589999985332
Q ss_pred CCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCC-CCCCCChhHHHHH
Q 006917 167 PTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMS-VSGSWSQNAIQGT 245 (625)
Q Consensus 167 p~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 245 (625)
||... |. +..++ ..|.+++..+ . ++++ .+.-|...
T Consensus 378 ----------YG~LS---~~--~~~~l------~~g~rve~d~----------~--------Krnp~DFaLWK~s----- 413 (699)
T PRK14535 378 ----------YGQLS---GK--SLDDL------RAGERVEVDG----------F--------KRDPLDFVLWKAA----- 413 (699)
T ss_pred ----------ccccc---CC--ChHHh------cCCCcccccc----------c--------cCCccccceeccC-----
Confidence 22210 10 01111 1133322110 0 1111 12234321
Q ss_pred HHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccchhHh
Q 006917 246 YAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTV 325 (625)
Q Consensus 246 ~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~ 325 (625)
+.|. ++.+.+||-..|+|. |-+ .....++...+.| ||.+|.|++|+|+.
T Consensus 414 ----k~Ge----p~W~SPWG~GRPGWH----------------IEC----SAMs~~~LG~~~D---IHgGG~DLiFPHHE 462 (699)
T PRK14535 414 ----KAGE----PAWESPWGNGRPGWH----------------IEC----SAMSENLFGDTFD---IHGGGADLQFPHHE 462 (699)
T ss_pred ----CCCC----CCccCCCCCCCCchH----------------HHH----HHHHHHHcCCcce---eECCccccCCCCCc
Confidence 1222 234789999999983 321 1122334443466 99999999999999
Q ss_pred HHHHHhhcC-CCC--------------ccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCC
Q 006917 326 MFPSTLLGT-EEN--------------WTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPE 390 (625)
Q Consensus 326 ~~pa~l~a~-~~~--------------~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~ 390 (625)
...|+..++ |.+ -+..+.++++|||+++|+|||||+||+|++.++++ .|++|++|||+++ +++
T Consensus 463 NEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe-~ygpdalRl~lLs-shY 540 (699)
T PRK14535 463 NEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLK-QYDPEVVRFFILR-AHY 540 (699)
T ss_pred cHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHH-hCCHHHHHHHHHc-CCC
Confidence 999998875 321 01346788889999999999999999999999998 7999999999998 789
Q ss_pred CCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-Hhc
Q 006917 391 VSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAM-EKV 469 (625)
Q Consensus 391 ~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~ 469 (625)
.++++||++.+.++ ....+++.+++.++.. . . + .+...+..+.+.+.+|| +++
T Consensus 541 RspL~fS~e~Le~A--k~~l~Rl~~~l~~~~~---~------~---~------------~~~~~l~~~~~~f~~AL~DDl 594 (699)
T PRK14535 541 RSPLNYSDAHLDDA--KGALTRLYTTLKNTPA---A------E---F------------MLSENVNDYTRRFYAAMNDDF 594 (699)
T ss_pred CCCCCcCHHHHHHH--HHHHHHHHHHHHhhhh---c------c---c------------hhhhhHHHHHHHHHHHHhhcc
Confidence 99999999999876 3444555554443210 0 0 0 01123345667889999 699
Q ss_pred cHHHHHHHHHHHHHHHhHH
Q 006917 470 KLKQGLRIGMSISSEGNAY 488 (625)
Q Consensus 470 ~~~~a~~~i~~l~~~~N~y 488 (625)
+++.|+..|+++++.+|..
T Consensus 595 ntp~Ala~L~~lvk~iN~~ 613 (699)
T PRK14535 595 GTVEAVAVLFELAGEVNKT 613 (699)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 9999999999999998875
No 53
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=7.8e-51 Score=424.09 Aligned_cols=359 Identities=12% Similarity=0.089 Sum_probs=264.2
Q ss_pred CCcccccCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcC
Q 006917 8 PDGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEEN 87 (625)
Q Consensus 8 ~~~~~~~~~~~~p~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 87 (625)
-|++++++++|.| ++.-++|||+|.|| +.+||||+|+ +|.+|+++||+|++|++|.|++|+||||+||+.+|+++|
T Consensus 21 yntlt~~~~~f~p-~~~v~~YvCGpTvY--~~~HIGhart-~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g 96 (411)
T TIGR03447 21 FDTADGQVRPVEP-GPEAGMYVCGITPY--DATHLGHAAT-YLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDG 96 (411)
T ss_pred EECCCCCeeeccC-CCcceEEEeCCccC--CCcccccchH-HHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcC
Confidence 4899999999999 66667777776655 9999999998 577999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCcc-cccccCCCChhHHHHHHHHHHHHHHCCCEEEeee----eeeeeCCCCcccccccc
Q 006917 88 CTTQQICDKYYAIHKAVYNWFNIS-FDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTT----QQLYCDTCKRFLADRLV 162 (625)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~lgi~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~----~~~y~~~~~~~l~~~~v 162 (625)
++|+++++++.+.|++++++|||. +|.|+|||+ |...+++++++|.++|++|+..+ .+||+++.-.-
T Consensus 97 ~t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe--~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~------ 168 (411)
T TIGR03447 97 VDWRELGTSQIDLFREDMEALRVLPPRDYIGAVE--SIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQ------ 168 (411)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCC--CHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchhc------
Confidence 999999999999999999999985 899999884 58999999999999999999887 79999875322
Q ss_pred ccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCc-cEEEeccceeeeccchHHHHHHHHHhCC-CCCCCChh
Q 006917 163 EGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQAT-PKIRDTDHLFLELPLIKDKLEEYINKMS-VSGSWSQN 240 (625)
Q Consensus 163 ~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~-~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~ 240 (625)
||... |.. ..++.... +.. ++.. +.-++++ ++.-|...
T Consensus 169 --------------YG~Ls---~~~--~~~~~~~~----~~~~~~~~-----------------~~~K~~p~DFaLWK~~ 208 (411)
T TIGR03447 169 --------------FGYES---GYD--RATMLELF----AERGGDPD-----------------RPGKRDPLDALLWRAA 208 (411)
T ss_pred --------------ccccc---CCC--HHHHHhhh----cccccCcc-----------------cccCCCCcccceeCCC
Confidence 22110 000 00000000 000 0000 0001111 12223321
Q ss_pred HHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeeccc
Q 006917 241 AIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNA 320 (625)
Q Consensus 241 ~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~ 320 (625)
+.|. ++.+.+||...|+|. |-+ ...-.++...+.| ||.+|.|++
T Consensus 209 ---------~~~e----~~w~spwG~GRPGWH----------------iEC----sam~~~~lg~~~D---ih~GG~DLi 252 (411)
T TIGR03447 209 ---------REGE----PSWDSPFGPGRPGWH----------------IEC----SAIATNRLGAGFD---IQGGGSDLI 252 (411)
T ss_pred ---------CCCC----CCccCCCCCCCChhH----------------HHH----HHHHHHHcCCcee---cccCccccc
Confidence 1111 245789999999983 321 1122233443456 999999999
Q ss_pred chhHhHHHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHH
Q 006917 321 PFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWED 400 (625)
Q Consensus 321 ~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~ 400 (625)
|+|+.+..|+..++...-+.++.+++.|+|+++|+|||||+||+|++.++++..+++|++|||+++ +++.++++||++.
T Consensus 253 fpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls-~~Yr~pl~fs~e~ 331 (411)
T TIGR03447 253 FPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLA-GHYRQDRDWTDAV 331 (411)
T ss_pred ccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEec-CCCCCCCccCHHH
Confidence 999999999988863221355666666999999999999999999999998744899999999996 8999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Q 006917 401 FQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAM-EKVKLKQGLRIGM 479 (625)
Q Consensus 401 ~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~~a~~~i~ 479 (625)
+.++ .....++.+++.++ . . . .+..+...+.++| ++++++.|+..|+
T Consensus 332 l~~a--~~~l~rl~~~~~~~------------~-----~----~---------~~~~~~~~~~~al~dDln~p~a~~~l~ 379 (411)
T TIGR03447 332 LAEA--EARLARWRAALAAT------------D-----A----P---------DATDLIARLRQHLANDLDTPAALAAVD 379 (411)
T ss_pred HHHH--HHHHHHHHHHHhhc------------c-----c----c---------hHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 9876 34444454444321 0 0 0 1123345677888 6999999999999
Q ss_pred HHHHHHhH
Q 006917 480 SISSEGNA 487 (625)
Q Consensus 480 ~l~~~~N~ 487 (625)
++++.+|.
T Consensus 380 ~~~~~~n~ 387 (411)
T TIGR03447 380 NWAAAALS 387 (411)
T ss_pred HHHHHHHh
Confidence 99987664
No 54
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.1e-49 Score=411.98 Aligned_cols=348 Identities=11% Similarity=0.080 Sum_probs=252.8
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006917 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAV 104 (625)
Q Consensus 25 ~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 104 (625)
-++|||. |||++++||||+|+ +|.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|+++++++++.|.++
T Consensus 10 v~~YvCG--pTvY~~~HIGh~r~-~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d 86 (384)
T PRK12418 10 ATMYVCG--ITPYDATHLGHAAT-YLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRED 86 (384)
T ss_pred eEEEecC--CCCCCCCccchhHH-HHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3455554 56669999999998 67899999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCc-ccccccCCCChhHHHHHHHHHHHHHHCCCEEEeee----eeeeeCCCCccccccccccCCCCCccccCCCCCc
Q 006917 105 YNWFNI-SFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTT----QQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGD 179 (625)
Q Consensus 105 ~~~lgi-~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~----~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~ 179 (625)
++.||| ++|.|+|||+ |.+.+++++++|.++|++|++.. .|||+++.-.- ||.
T Consensus 87 ~~~Lni~~~~~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~--------------------YG~ 144 (384)
T PRK12418 87 MEALRVLPPRDYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQ--------------------FGY 144 (384)
T ss_pred HHHhCCCCCCccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhh--------------------ccc
Confidence 999997 8899999995 69999999999999999999998 89999875322 221
Q ss_pred cccccCCCCCCCccCCCccccCCCc-cEEEeccceeeeccchHHHHHHHHHhCC-CCCCCChhHHHHHHHHHhcCCCCcc
Q 006917 180 QCEKCGKLLNPTELKDPRCKVCQAT-PKIRDTDHLFLELPLIKDKLEEYINKMS-VSGSWSQNAIQGTYAWLKDGLKPRC 257 (625)
Q Consensus 180 ~ce~cg~~~~~~~l~~~~~~~~g~~-~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~d~~ 257 (625)
.. +. +..++.... +.. ++. + ..-++++ .+.-|... +.+.
T Consensus 145 ls---~~--~~~~~~~~~----~~~~~~~---~--------------~~~K~~p~DFaLWK~~---------~~~~---- 185 (384)
T PRK12418 145 ES---GY--DRATMLELF----AERGGDP---D--------------RPGKRDPLDALLWRAA---------RPGE---- 185 (384)
T ss_pred cc---CC--CHHHHHhhh----cccccCc---c--------------cccCCCcccceeeccC---------CCCC----
Confidence 10 00 000000000 000 000 0 0001111 11123321 0111
Q ss_pred cccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCC
Q 006917 258 ITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEEN 337 (625)
Q Consensus 258 IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~ 337 (625)
++.+.+||...|+|. |-+ ...-.++...+.| ||.+|.|++|+|+.++.|+..++...
T Consensus 186 ~~w~spwG~GRPGWH----------------iEC----sam~~~~lg~~~D---IH~GG~DL~FPHHeneiaq~~a~~g~ 242 (384)
T PRK12418 186 PSWPSPFGPGRPGWH----------------IEC----SAIALNRLGSGFD---IQGGGSDLIFPHHEFSAAHAEAATGE 242 (384)
T ss_pred CcccCCCCCCCChhH----------------HHH----HHHHHHHcCCCcc---cccCccccccchhHhHHHHHHHhcCC
Confidence 344789999999983 321 1122334444567 99999999999999999998886322
Q ss_pred ccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHH
Q 006917 338 WTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFV 417 (625)
Q Consensus 338 ~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~ 417 (625)
.+.++.+++.|+|+++|+|||||+||+|++.++++.+++++++|||+++ ++++++++||++.+.++. ....++.|++
T Consensus 243 ~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls-~~yr~~l~fs~e~l~~a~--~~l~r~~~~~ 319 (384)
T PRK12418 243 RRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLA-GHYRADREWTDAVLAEAE--ARLARWRAAA 319 (384)
T ss_pred CCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEec-cCCCCCcccCHHHHHHHH--HHHHHHHHHH
Confidence 1334455555889999999999999999999998634666799999995 999999999999998763 3334444443
Q ss_pred HHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHhHHHHhc
Q 006917 418 NRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAM-EKVKLKQGLRIGMSISSEGNAYLQES 492 (625)
Q Consensus 418 ~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~~a~~~i~~l~~~~N~y~~~~ 492 (625)
.+. . . . .+..+.+.+.++| ++++++.|+..|+++++.+|.|....
T Consensus 320 ~~~-----~------------~----~---------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~ 365 (384)
T PRK12418 320 ALP-----A------------G----P---------DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGDD 365 (384)
T ss_pred hcc-----c------------c----c---------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCCC
Confidence 321 0 0 0 1223457788899 68999999999999999999998764
No 55
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-48 Score=396.71 Aligned_cols=499 Identities=15% Similarity=0.152 Sum_probs=334.7
Q ss_pred CCcccccCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHH-HCCCceeeeccCcccchHHHHHHHH-
Q 006917 8 PDGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCR-LRGYNALYICGTDEYGTATETKAME- 85 (625)
Q Consensus 8 ~~~~~~~~~~~~p~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r-~~G~~V~~~~g~D~~G~~i~~~a~~- 85 (625)
-|+++|.+++|+|..+++ +-..++.|||++..||||||+ |+..||++|+++ ..||+|.|++|++|.++||+.+|++
T Consensus 38 YNslTr~Ke~fip~~~~~-v~wY~CGpTvYD~SHmGHArs-YVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~ 115 (586)
T KOG2007|consen 38 YNSLTRQKEVFIPNNGNK-VTWYICGPTVYDSSHMGHARS-YVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKE 115 (586)
T ss_pred eeccccccceeeeCCCCe-EEEEEecCcccchhhhhhhhh-hhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhh
Confidence 489999999999987765 667777889999999999997 688999999999 5599999999999999999999972
Q ss_pred -cCCCHHHHHH---HHHHHHHHHHhhcCccc-ccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCcccccc
Q 006917 86 -ENCTTQQICD---KYYAIHKAVYNWFNISF-DEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADR 160 (625)
Q Consensus 86 -~g~~~~~~~~---~~~~~~~~~~~~lgi~~-D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~ 160 (625)
.+..|..+.. .|.++|.++|.+|+|-. +.. |.-.+|...+..++++++++|++|..++.|||++..-..
T Consensus 116 ~m~e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~--tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~~---- 189 (586)
T KOG2007|consen 116 EMGEKPLSLSERFCYYEEEFLQDMAALNVLPPTVQ--TRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFPH---- 189 (586)
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHhCCCCCccc--chhhhchHHHHHHHHHHHhCCceeeeCCcEEEecccccc----
Confidence 2333333333 57799999999999954 555 445589999999999999999999999999999874331
Q ss_pred ccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChh
Q 006917 161 LVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQN 240 (625)
Q Consensus 161 ~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~ 240 (625)
.||... |.. ..+..+. |.....++ +--....-|...
T Consensus 190 ---------------~YgKL~---G~~---~~~~~gE----g~l~ds~K---------R~p~DFALWKAs---------- 225 (586)
T KOG2007|consen 190 ---------------SYGKLV---GQR---KNLQEGE----GVLSDSRK---------RSPADFALWKAS---------- 225 (586)
T ss_pred ---------------hhhhhc---Cch---hhcccCc----CccccccC---------CChhhhhhhhhc----------
Confidence 111110 100 0000000 11100000 000000111111
Q ss_pred HHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeeccc
Q 006917 241 AIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNA 320 (625)
Q Consensus 241 ~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~ 320 (625)
+.|.+-| ..+||-..|+|..+..+| +. .+..+..| ||.+|.|..
T Consensus 226 ---------K~gEP~W----eSPWG~GRPGWHIECSaM-----------as---------~~lG~~lD---IH~GG~DL~ 269 (586)
T KOG2007|consen 226 ---------KPGEPSW----ESPWGKGRPGWHIECSAM-----------AS---------AILGSQLD---IHGGGIDLA 269 (586)
T ss_pred ---------CCCCCCC----CCCCCCCCCCceeeeHHH-----------HH---------Hhhccccc---eecCccccc
Confidence 2343434 679999999996444433 11 11111346 999999999
Q ss_pred chhHhHHHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHH
Q 006917 321 PFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWED 400 (625)
Q Consensus 321 ~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~ 400 (625)
|+|+....|+..|.-..-..-++++++|||+++|+|||||++|+|++.++|+ .|+|++||++|++ ..+.+++|||...
T Consensus 270 FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk-~~sp~qLRl~fl~-~~wr~~ldYs~s~ 347 (586)
T KOG2007|consen 270 FPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALK-KYSPRQLRLAFLL-HQWRSPLDYSDST 347 (586)
T ss_pred CCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHH-hcCHHHHHHHHHH-HHhcCcCCchHHH
Confidence 9999999999887643211346788889999999999999999999999998 8999999999998 8899999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Q 006917 401 FQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAM-EKVKLKQGLRIGM 479 (625)
Q Consensus 401 ~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~~a~~~i~ 479 (625)
+..+ ..+...+.||+.-+..+.+. .. | .....+.+.+|+..+......++.++ ++++++.++..+.
T Consensus 348 m~~a--~q~e~~~~~ff~~~~al~~~-----~~---~---~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~ 414 (586)
T KOG2007|consen 348 MEQA--LQLEKSLNNFFLDVKALLRG-----AK---P---FEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIR 414 (586)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHhc-----cc---h---hhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHH
Confidence 8877 57778888888776666543 11 1 12345677889999999999999999 8999999999999
Q ss_pred HHHHHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHH------------hhchhhHHH---HHHHHHc---CCC
Q 006917 480 SISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACL------------LEPFMPSFS---LEVLKQL---NVP 541 (625)
Q Consensus 480 ~l~~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~l------------l~P~~P~~a---e~i~~~L---g~~ 541 (625)
+++..+|.|+....- ......+..+......++++++.. ..|++-.++ +.+-+.+ ..+
T Consensus 415 ~lvs~~N~~i~~~~~----~~~~~~L~~I~~yIt~~l~ifG~~e~~g~q~~~e~~~m~~v~~L~~fr~~vRe~a~~~~~~ 490 (586)
T KOG2007|consen 415 ELVSQGNAYIRESGE----RPNSALLKAIASYITKLLKIFGLSEGKGQQYVLEATVMPYVQSLSEFREKVREVAREKKVP 490 (586)
T ss_pred HHHhhhhHHHHHhcc----ccchHHHHHHHHHHHHHHHHhCCCcccccccccccchhHHHHHHHHHHHHHHHHHHhcchH
Confidence 999999999987640 011233334444444444544432 122322222 2222222 111
Q ss_pred CcccccCCcccchhhhccCCCccCCCCCccCC--CCCCccCCChHH-HHHHHHHhcCchhhHHHHHHHHHHHHHHHhhcc
Q 006917 542 TETKFSLSDENGDLERARKPWEILPAGHRIGM--SSPLFKELKDED-VRFFREKFAGSQADRAVQAEAEAKRLAEHLKKT 618 (625)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~--~~~Lf~ki~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (625)
+.+.+|| ..|+-.++..|..+.+ .+.|.+.++.++ +++.+++.... +.|..+|..+++++.+.+..+
T Consensus 491 --~iL~l~d-------~lR~~~l~~~g~~led~~g~~lvk~v~~e~~l~~~eek~~ae-~~K~~~k~d~~~~~~~~~~~a 560 (586)
T KOG2007|consen 491 --EILELCD-------TLRDSDLLELGVRLEDRKGSTLVKAVDREELLQEREEKTSAE-KNKDKEKSDRIREELAAKGIA 560 (586)
T ss_pred --HHHHHhH-------HHHHhhHHHhhhHHHhCCchHHHHHhhhHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHhHHH
Confidence 2233443 2233334456777755 457888888666 33333333322 233333333444555555555
Q ss_pred cccCC
Q 006917 619 KISVP 623 (625)
Q Consensus 619 ~~~~~ 623 (625)
++.||
T Consensus 561 ~~~i~ 565 (586)
T KOG2007|consen 561 LMKIP 565 (586)
T ss_pred hhcCC
Confidence 55555
No 56
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=1.5e-43 Score=350.87 Aligned_cols=296 Identities=17% Similarity=0.183 Sum_probs=197.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHH
Q 006917 18 KLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKY 97 (625)
Q Consensus 18 ~~p~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 97 (625)
|.|..+ +++-+.++.|||++.+||||+|+ +|..|+++||++..|++|.+++|++|.++||+.+|++.|++++++++++
T Consensus 1 F~p~~~-~~v~~Y~CGPTVYd~~HiGhaR~-~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y 78 (300)
T PF01406_consen 1 FKPLNP-GKVRMYVCGPTVYDYAHIGHART-YVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRY 78 (300)
T ss_dssp ---SCT-TEEEEEEEEEBTTS--BHHHHHH-HHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHH
T ss_pred CcCCCC-CeEEEEcCCCCCCCCCCCcceee-eeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHH
Confidence 456533 34556666789999999999997 6779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccc-ccccCCCChhHHHHHHHHHHHHHHCCCEEEee-eeeeeeCCCCccccccccccCCCCCccccCC
Q 006917 98 YAIHKAVYNWFNISF-DEFGRTSTPQQTEICQAIFKKLLENNWLSEYT-TQQLYCDTCKRFLADRLVEGSCPTLGCNYDS 175 (625)
Q Consensus 98 ~~~~~~~~~~lgi~~-D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~-~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~ 175 (625)
.+.|.+++++|||.. +.+.|.+ +|...+.+++++|.++|++|... +.++|+++.-.-
T Consensus 79 ~~~f~~dm~~Lnv~~p~~~prat--e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~------------------- 137 (300)
T PF01406_consen 79 EEEFFEDMKALNVLPPDHYPRAT--EHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPD------------------- 137 (300)
T ss_dssp HHHHHHHHHHTT----SEEEEGG--GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTT-------------------
T ss_pred HHHHHHHHHHcCCCCCccccchh--ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccccc-------------------
Confidence 999999999999965 5676655 89999999999999999999999 999999874321
Q ss_pred CCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCC-CCCCCChhHHHHHHHHHhcCCC
Q 006917 176 ARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMS-VSGSWSQNAIQGTYAWLKDGLK 254 (625)
Q Consensus 176 ~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~ 254 (625)
||.. +..++.+. ..|..+.. +.-++++ .+.-|... +.+.
T Consensus 138 -YG~L--------s~~~~~~l---~~~~~~~~------------------~~~K~~p~DFaLWK~~---------~~~e- 177 (300)
T PF01406_consen 138 -YGKL--------SNQDLEDL---EAGARVEV------------------DYEKRNPRDFALWKAA---------KPGE- 177 (300)
T ss_dssp -TTTT--------TT-SHHHH---HHCHHHTT-------------------TTSSSTT-EEEEEE-----------TTS-
T ss_pred -cccc--------cccchhhH---Hhhhhccc------------------ccccCCCcceeeeecc---------cccC-
Confidence 2211 00000000 00000000 0000111 11112221 0111
Q ss_pred CcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcC
Q 006917 255 PRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGT 334 (625)
Q Consensus 255 d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~ 334 (625)
++.+.+||...|+| +|-+. ....++...+.| ||.+|.|++|+|+....|+..++
T Consensus 178 ---~~w~spwG~GRPGW----------------HiECs----am~~~~lG~~~D---IH~GG~DL~FPHHENEiAqs~a~ 231 (300)
T PF01406_consen 178 ---PSWDSPWGKGRPGW----------------HIECS----AMSMKYLGDTFD---IHGGGIDLIFPHHENEIAQSEAA 231 (300)
T ss_dssp -----B--TTSSEEE-H----------------HHHHH----HHHHHHHTTSEE---EEEEEGGGTTTHHHHHHHHHHHH
T ss_pred ---CcccCCCccCcCce----------------eeehH----HHHHHHcCCCce---EEccccccCCCCccchHHHHHHh
Confidence 45578999999988 33211 112233333456 99999999999999999999887
Q ss_pred CCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHH
Q 006917 335 EENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKL 405 (625)
Q Consensus 335 ~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~ 405 (625)
... +..+.+++.|||+++|+|||||+||+|+++|+++ +|+++++||+|++ ++++++++||++.+.++-
T Consensus 232 ~g~-~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~-~~~~~~lR~~~l~-~hYr~~l~~s~~~l~~A~ 299 (300)
T PF01406_consen 232 TGK-PFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLK-KYSPDALRLFLLS-THYRKPLNFSEENLEEAK 299 (300)
T ss_dssp HSS--SEEEEEEE--EEETTCE--TTTT---BHHHHHT-TS-HHHHHHHHHT-S-TTS-EEE-HHHHHHHH
T ss_pred hCc-hHHHHHHHHHHHhhcCccccccCCCEEEHHHHhh-cCCHHHHHHHHhc-CCCCCccccCHHHHHHhc
Confidence 432 4557777779999999999999999999999998 7999999999998 999999999999998763
No 57
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.4e-40 Score=322.42 Aligned_cols=209 Identities=19% Similarity=0.156 Sum_probs=175.0
Q ss_pred CCcccccCCCCCCCC-CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc
Q 006917 8 PDGERNHRVAKLPVP-GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE 86 (625)
Q Consensus 8 ~~~~~~~~~~~~p~~-~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~ 86 (625)
-|++++++++|.|.. ++.++|+|.|. |||++||||+|+ ++.+|+++||+|++|++|.|++|+||||+||+.+|+++
T Consensus 3 ~~t~~~~~~~~~p~~~~~~~~y~~gpt--~y~~~HiGH~r~-~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~ 79 (213)
T cd00672 3 YNTLTRQKEEFVPLNPGLVTMYVCGPT--VYDYAHIGHART-YVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREE 79 (213)
T ss_pred ccCCCCceeeeecCCCCCceEEEeCCc--cCCCcccccchh-HHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHc
Confidence 478999999999864 44567766655 558999999997 57799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCccc-ccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccC
Q 006917 87 NCTTQQICDKYYAIHKAVYNWFNISF-DEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGS 165 (625)
Q Consensus 87 g~~~~~~~~~~~~~~~~~~~~lgi~~-D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~ 165 (625)
|++|+++++++++.|+++++.|||++ |.|+|| |. ..
T Consensus 80 g~~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt-----------------------------Wh-~e------------- 116 (213)
T cd00672 80 GLSWKEVADYYTKEFFEDMKALNVLPPDVVPRV-----------------------------WH-IE------------- 116 (213)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCCcceee-----------------------------hh-HH-------------
Confidence 99999999999999999999999998 899998 21 11
Q ss_pred CCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHH
Q 006917 166 CPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGT 245 (625)
Q Consensus 166 cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (625)
|. . +.
T Consensus 117 -----c~----------------------------------------------a------------------------m~ 121 (213)
T cd00672 117 -----CS----------------------------------------------A------------------------MA 121 (213)
T ss_pred -----HH----------------------------------------------H------------------------HH
Confidence 10 0 11
Q ss_pred HHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccchhHh
Q 006917 246 YAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTV 325 (625)
Q Consensus 246 ~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~ 325 (625)
..++. .+.| +|..|.|++++|+.
T Consensus 122 ~~~lg------------------------------------------------------~~~d---ih~~G~Dl~fpH~~ 144 (213)
T cd00672 122 MKYLG------------------------------------------------------ETFD---IHGGGVDLIFPHHE 144 (213)
T ss_pred HHHcC------------------------------------------------------CCcc---EEeecCCCCcChHH
Confidence 11111 1346 99999999999999
Q ss_pred HHHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcC
Q 006917 326 MFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFT 397 (625)
Q Consensus 326 ~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs 397 (625)
++.++..++... +.++.+++.|+|+++|+|||||+||+|++.|+++ .+++|++|||+++ .++.++++|+
T Consensus 145 ~~~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~-~~~~da~R~~~l~-~~~~~~l~f~ 213 (213)
T cd00672 145 NEIAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALK-KYDPEVLRLALLS-SHYRSPLDFS 213 (213)
T ss_pred HHHHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHH-HcCHHHHHHHHHh-CCcCCCCCCC
Confidence 999998875333 4556666668999999999999999999999998 7999999999998 6678999986
No 58
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-39 Score=357.83 Aligned_cols=339 Identities=15% Similarity=0.101 Sum_probs=256.2
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006917 23 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHK 102 (625)
Q Consensus 23 ~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 102 (625)
.++++.|+.++|||||++||||+|+++ .+|+++|++++.||+|.++.|+||+|++|...+.+.+..++++++.+.+.|+
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~i-igD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~ 187 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAV-IGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIK 187 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHH-HHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999965 5999999999999999999999999999999999988899999999999999
Q ss_pred HHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEE-EeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccc
Q 006917 103 AVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLS-EYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQC 181 (625)
Q Consensus 103 ~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy-~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~c 181 (625)
+++++|||.+|.|.++++..|...+++++++|.++|++| +.++.+|++.. .+. +
T Consensus 188 ~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~--~~~---------------------~-- 242 (507)
T PRK01611 188 EDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLT--EFG---------------------D-- 242 (507)
T ss_pred HHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEch--hhC---------------------C--
Confidence 999999999999988888888899999999999999999 77666666432 110 0
Q ss_pred cccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccc
Q 006917 182 EKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRD 261 (625)
Q Consensus 182 e~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~ 261 (625)
.+..+.+++...+
T Consensus 243 -------------------~~~~vl~ksdG~~------------------------------------------------ 255 (507)
T PRK01611 243 -------------------DKDRVLIKSDGTY------------------------------------------------ 255 (507)
T ss_pred -------------------CCCeEEEECCCCc------------------------------------------------
Confidence 0112222222211
Q ss_pred cCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCccCc
Q 006917 262 LKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLM 341 (625)
Q Consensus 262 ~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~ 341 (625)
.|.-- -++|.- ..+++ .| ++|+++|.||..+...++ +.+..+|.. ++
T Consensus 256 ----------------~Y~t~--Dia~~~------~k~~~-----~d-~~i~V~g~~q~~hf~~~~-~~~~~lg~~--~~ 302 (507)
T PRK01611 256 ----------------TYFTR--DIAYHL------YKFER-----FD-RVIYVVGADHHGHFKRLK-AALKALGYD--PD 302 (507)
T ss_pred ----------------cchHH--HHHHHH------HHHhh-----cC-EEEEEECCChHHHHHHHH-HHHHHcCCC--cc
Confidence 11000 011110 00111 01 347888888853322233 556777753 33
Q ss_pred c-eEEee---eeee-cCCccccccCCcccCchhhhhcCCCc----------------hhHHHHHHhcCCCCCCCCcCHHH
Q 006917 342 K-TISVT---EYLN-YEAGKFSKSKGVGVFGNDVKDTNIPA----------------EVWRYYLITNRPEVSDTLFTWED 400 (625)
Q Consensus 342 ~-~i~~h---g~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~----------------D~lR~~ll~~~~~~~d~~fs~~~ 400 (625)
. .++.| |++. .+|+|||||+||+|+++|++++.+|+ |++||++++. +.++|++|+++.
T Consensus 303 ~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~-~~~~~~~Fd~~~ 381 (507)
T PRK01611 303 ALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSR-SRDKDLDFDLDL 381 (507)
T ss_pred cceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhc-CCCCCCccCHHH
Confidence 2 44444 6665 47889999999999999999843888 9999999985 567999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 006917 401 FQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMS 480 (625)
Q Consensus 401 ~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~ 480 (625)
+.+..+ +-..++++.+.|+++++++... .+..+.. ....++.|+||+..+..+++.+.+++++++++.++.++.+
T Consensus 382 ~~~~~~-~~~~yvqYa~aR~~sil~k~~~---~~~~~~~-~~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~ 456 (507)
T PRK01611 382 ALSFEG-NNPPYVQYAHARICSILRKAAE---AGIDLLL-ALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYE 456 (507)
T ss_pred HHhhcC-CCcHHHHHHHHHHHHHHHhhhc---cCccccc-cccCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 876433 3344999999999999987311 0111110 1123567999999999999999999999999999999999
Q ss_pred HHHHHhHHHHhcc
Q 006917 481 ISSEGNAYLQESQ 493 (625)
Q Consensus 481 l~~~~N~y~~~~~ 493 (625)
|++.+|.|++.++
T Consensus 457 la~~f~~fY~~~~ 469 (507)
T PRK01611 457 LAGAFHSFYNRVL 469 (507)
T ss_pred HHHHHHHHHHHCC
Confidence 9999999998663
No 59
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-39 Score=339.59 Aligned_cols=476 Identities=20% Similarity=0.312 Sum_probs=341.6
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc-------CC-------
Q 006917 23 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE-------NC------- 88 (625)
Q Consensus 23 ~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-------g~------- 88 (625)
+.++|++|-|.||-||.+||||+.+ .-..|+..-|.|++|++|+|.+|..|.|.||...|.+. |.
T Consensus 42 ~~~Kff~tfpyPYMNG~LHlGH~Fs-lSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~e 120 (1080)
T KOG0437|consen 42 SKPKFFVTFPYPYMNGRLHLGHAFS-LSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPEE 120 (1080)
T ss_pred ccCceeEeccccccCceeeccceee-hhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCchh
Confidence 4578999999999999999999997 56799999999999999999999999999999888542 11
Q ss_pred -------------------------------------------------------CHHHHHHHHHHHHHHHHhhcCcccc
Q 006917 89 -------------------------------------------------------TTQQICDKYYAIHKAVYNWFNISFD 113 (625)
Q Consensus 89 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~lgi~~D 113 (625)
+|..+...+--.-.++++++|...|
T Consensus 121 ~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~iD 200 (1080)
T KOG0437|consen 121 EEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLGID 200 (1080)
T ss_pred hhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCCcc
Confidence 1222222333334678899998887
Q ss_pred ---cccCCC-ChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCcccccccc---ccCCCC------------------
Q 006917 114 ---EFGRTS-TPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLV---EGSCPT------------------ 168 (625)
Q Consensus 114 ---~~~~t~-~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v---~g~cp~------------------ 168 (625)
.|+.|. ++.|-.+|++-|.+|.+.|.|..+..-..||+.+++..-|+.- +|.-|.
T Consensus 201 WRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR~sGEgV~PqeytliKle~le~~p~~l~ 280 (1080)
T KOG0437|consen 201 WRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVGPQEYTLIKLEVLEPFPKALS 280 (1080)
T ss_pred eeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccccccCCCCCcceEEEEEEEecccchhhcc
Confidence 367663 7899999999999999999999999999999999998877642 111110
Q ss_pred ------------------------------------------------------------------Ccc-----ccC---
Q 006917 169 ------------------------------------------------------------------LGC-----NYD--- 174 (625)
Q Consensus 169 ------------------------------------------------------------------~~c-----~~~--- 174 (625)
+.| |++
T Consensus 281 ~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iG 360 (1080)
T KOG0437|consen 281 SLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDLIG 360 (1080)
T ss_pred ccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeehHHHhhcchhhccccCCcccceeeecchhhcC
Confidence 000 000
Q ss_pred -----------------------------------------------------------------------CCCCccccc
Q 006917 175 -----------------------------------------------------------------------SARGDQCEK 183 (625)
Q Consensus 175 -----------------------------------------------------------------------~~~g~~ce~ 183 (625)
..+||.|..
T Consensus 361 a~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae 440 (1080)
T KOG0437|consen 361 APLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAE 440 (1080)
T ss_pred CcccCcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeeccccchhhHH
Confidence 123443321
Q ss_pred --cCCCC--CCC-----------------------------------------cc------------CCCccccCCCccE
Q 006917 184 --CGKLL--NPT-----------------------------------------EL------------KDPRCKVCQATPK 206 (625)
Q Consensus 184 --cg~~~--~~~-----------------------------------------~l------------~~~~~~~~g~~~~ 206 (625)
|..+. +|. +| ...+-.|||+..+
T Consensus 441 ~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEkqVmSRSGdeCi 520 (1080)
T KOG0437|consen 441 VVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEKQVMSRSGDECI 520 (1080)
T ss_pred HHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEEEeccccccHHhhhhHHHHHHHhcccceeecCcchhhhccCCCceE
Confidence 21110 000 01 1246789999999
Q ss_pred EEeccceeeec--cchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCC------CCCcee
Q 006917 207 IRDTDHLFLEL--PLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEK------FKDKVF 278 (625)
Q Consensus 207 ~~~~~~~f~~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~------~~~~vi 278 (625)
+..++|||++. +.++....+.++.+..+..-.++......+||. .|.+||+...|+.+|+|. .++.+|
T Consensus 521 VAL~DQWYldYgE~eWKk~a~~cLe~l~~f~dEtR~~fE~tLdWL~----~wacsRsyGLGTrlPWD~qyLvESLSDSTI 596 (1080)
T KOG0437|consen 521 VALCDQWYLDYGEAEWKKQAKECLENLNTFSDETRNGFEDTLDWLG----QWACSRSYGLGTRLPWDEQYLVESLSDSTI 596 (1080)
T ss_pred EEeccchhhhcCcHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHH----hhhhhccccCCCCCCCcHHHHHHhcchhHH
Confidence 99999999998 568888899998886543334455556778886 799999999999999973 356666
Q ss_pred eeecc---------------------------ccchHHHhccCCC--------------hhhHhhcCCCCCcceEEEEee
Q 006917 279 YVWFD---------------------------APIGYISITSCYT--------------PDWEEWWKNPENVALYQFMGK 317 (625)
Q Consensus 279 yvWfD---------------------------a~~~yi~~~~~~~--------------~~~~~~w~~p~d~~~i~~~Gk 317 (625)
|.-+- ..+.|+.....++ .+|+.|+ |.| +.+.||
T Consensus 597 YmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~Y--PiD---lrvsGK 671 (1080)
T KOG0437|consen 597 YMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFY--PID---LRVSGK 671 (1080)
T ss_pred HHHHHHHHHHHHHhhccCCcccCCCChhhcCHHHHHHhhccCCCCcCCCccHHHHHHHHHhhhccc--cee---eeeccc
Confidence 64332 2334444322221 3577777 467 899999
Q ss_pred cccch--------hHhHHHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCC
Q 006917 318 DNAPF--------HTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRP 389 (625)
Q Consensus 318 D~~~f--------H~~~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~ 389 (625)
|.+.. |..+||. - ..|+.+.++|||.++++|||||.||+.++++.++ ++|+|+.|+.|+..+.
T Consensus 672 DLi~NHLtfflynHvAl~~~------k--~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaie-KFgad~tRlalAdaGD 742 (1080)
T KOG0437|consen 672 DLIPNHLTFFLYNHVALFPE------K--KWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIE-KFGADGTRLALADAGD 742 (1080)
T ss_pred cccccceeEeeeehhhhccc------c--cCccceeeCceEEecchhhccccCCeeeHHHHHH-HhCccceeeeeecccC
Confidence 99854 5555551 2 3679999999999999999999999999999998 8999999999998888
Q ss_pred CCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 006917 390 EVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKV 469 (625)
Q Consensus 390 ~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~ 469 (625)
.-.|.||......+. +-.+.+.+.-+..++... +. .-. +......|+-+...++.++....++++..
T Consensus 743 ~veDANF~ea~AnAa-----ILRLyt~~ew~eEm~~~~-----s~-Lrt--Gp~~~FaDrvf~nemN~~i~~t~~aye~~ 809 (1080)
T KOG0437|consen 743 GVEDANFVEANANAA-----ILRLYTYVEWIEEMCENR-----SS-LRT--GPASTFADRVFENEMNALIAKTERAYEDT 809 (1080)
T ss_pred CcccchhHHhcccHH-----HHHHHHHHHHHHHHHhhH-----Hh-hcc--CchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999988765443 234455555555555531 11 000 01123568889999999999999999999
Q ss_pred cHHHHHHHHH-HHHHHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCC
Q 006917 470 KLKQGLRIGM-SISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVP 541 (625)
Q Consensus 470 ~~~~a~~~i~-~l~~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~ 541 (625)
.|+.|+.+-+ ++..+-..|-.... .. ... .++...+.+.+.||+||.||+|+.||..++.+
T Consensus 810 ~fk~aLK~Gfyd~qaArD~Yrel~g-------~~-mh~---dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~ 871 (1080)
T KOG0437|consen 810 LFKDALKYGFYDLQAARDMYRELCG-------EG-MHR---DLVFRFIETQTLLLAPICPHLAEYIWRTVLKK 871 (1080)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhc-------cc-ccH---HHHHHHHHHHHHHHhccchHHHHHHHHHhccC
Confidence 9999999876 55544334433321 11 111 22334566888999999999999999988764
No 60
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=5.5e-36 Score=332.70 Aligned_cols=345 Identities=16% Similarity=0.161 Sum_probs=254.1
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHH---cC-------------
Q 006917 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAME---EN------------- 87 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~---~g------------- 87 (625)
++++.|..+.|||+|++||||+|++++ +|+++|+++..||+|.....+.|.|.++-..+.. .+
T Consensus 111 ~~~v~ve~~spn~~~~~hiGh~r~~~~-gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~ 189 (566)
T TIGR00456 111 NKKIIIEFSSANPAGPLHIGHLRNAII-GDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDH 189 (566)
T ss_pred CCeEEEEecCCCCCCCCchhhhHHHHH-HHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChH
Confidence 568999999999999999999999755 9999999999999999888888888876544411 00
Q ss_pred --------------------------------CC------HHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHH
Q 006917 88 --------------------------------CT------TQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQA 129 (625)
Q Consensus 88 --------------------------------~~------~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~ 129 (625)
-+ .+.+++...+.+++++++|||.+|.|....+..+...+..
T Consensus 190 ~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~ 269 (566)
T TIGR00456 190 GLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPK 269 (566)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHH
Confidence 01 1344556678899999999999998877777778888999
Q ss_pred HHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEe
Q 006917 130 IFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRD 209 (625)
Q Consensus 130 ~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~ 209 (625)
+++.|.++|++|++ +..|.+.+. +|+. + +..+..++
T Consensus 270 v~~~L~~~g~~~~~-Ga~~~~~~~-----------------------~~d~---------------~-----~~~vl~ks 305 (566)
T TIGR00456 270 VLEDLKEKGLVVED-GALWLDLTL-----------------------FGDK---------------D-----KDRVLQKS 305 (566)
T ss_pred HHHHHHHCCCEEEc-CCEEEEccc-----------------------ccCC---------------C-----CCeEEEEC
Confidence 99999999999977 666654320 0100 0 01122222
Q ss_pred ccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHH
Q 006917 210 TDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYI 289 (625)
Q Consensus 210 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi 289 (625)
.. ...|.--| ++|+
T Consensus 306 DG----------------------------------------------------------------t~~Y~t~D--iA~~ 319 (566)
T TIGR00456 306 DG----------------------------------------------------------------TYLYLTRD--IAYH 319 (566)
T ss_pred CC----------------------------------------------------------------Cceechhh--HHHH
Confidence 22 22222111 1221
Q ss_pred HhccCCChhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCch-
Q 006917 290 SITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGN- 368 (625)
Q Consensus 290 ~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~- 368 (625)
.. .+++ ..| ++|+++|.||..+...++ +.++++|.+ +|.++.+|+|.+++|.|||||+||+|+++
T Consensus 320 ~~------k~~~----~~d-~iI~V~g~~q~~h~~~v~-~~l~~lG~~--~~~~l~h~~~~~V~~~kmSkr~Gn~V~~~d 385 (566)
T TIGR00456 320 LD------KLER----GFD-KMIYVWGSDHHLHIAQFF-AILEKLGFY--KKKELIHLNFGMVPLGSMKTRRGNVISLDN 385 (566)
T ss_pred HH------HHhc----CCC-EEEEEecCcHHHHHHHHH-HHHHHcCCC--CCCceEEEEEEEEECCCCCccCCceeeHHH
Confidence 10 0111 012 457888888864333334 668888864 67899999999999999999999999998
Q ss_pred ----------------------hhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhC
Q 006917 369 ----------------------DVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAK 426 (625)
Q Consensus 369 ----------------------d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k 426 (625)
++++ .+|.|++||++++.. ..+|++||++.+.+ .|++++++++|+++|++++++|
T Consensus 386 ll~~~~~ra~~~i~~~~~~~~~~~~~-~vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~-~~~n~~~yiqYa~aR~~SIlrK 462 (566)
T TIGR00456 386 LLDEASKRAGNVITIKNDLEEEDVAD-AVGIGAVRYFDLSQN-RETHYVFDWDAMLS-FEGNTAPYIQYAHARICSILRK 462 (566)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHH-HhcccceeeHHhhcC-CCCCceecHHHHhc-cCCCCchhHHHHHHHHHHHHHh
Confidence 5554 588999999999966 57999999998877 5899999999999999999998
Q ss_pred CCCCCCCCCCCCC--CCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhccccccccCCH
Q 006917 427 PPGRGYGSIIPDS--PKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQ 502 (625)
Q Consensus 427 ~~~~~~~~~~p~~--~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~pw~l~k~~~ 502 (625)
. ..+..+.. .....++.+..|+..+..+++.+.+++++++++.++.+++++++.+|+|++.+ |.+..+++
T Consensus 463 ~----~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~--~Vl~~~~~ 534 (566)
T TIGR00456 463 A----DIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKAC--PVLDAENE 534 (566)
T ss_pred c----ccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcC--ccCCCCCH
Confidence 3 11111111 01123566788999999999999999999999999999999999999999987 44543333
No 61
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=100.00 E-value=1.1e-34 Score=299.18 Aligned_cols=271 Identities=18% Similarity=0.236 Sum_probs=191.9
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCccc------------------chHHHHHHHH
Q 006917 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEY------------------GTATETKAME 85 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~------------------G~~i~~~a~~ 85 (625)
..+++|+||+ ||||.+||||+++ ++.+|+++||+|++|++|.|++|+||| |.|+...+..
T Consensus 18 ~~~~~v~tgi-~psG~~HIG~~~e-~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p 95 (353)
T cd00674 18 KEKYVVASGI-SPSGHIHIGNFRE-VITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDP 95 (353)
T ss_pred CCeEEEecCC-CCCCCcccCccHH-HHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhh
Confidence 3568889988 5999999999998 678999999999999999999999999 8899999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccC
Q 006917 86 ENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGS 165 (625)
Q Consensus 86 ~g~~~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~ 165 (625)
.|+.+ ++++++.+.|++.|+.|||++|.+.+|....+..+.+.++..|.+++.|..--.+.-=.+..++++|
T Consensus 96 ~g~~~-~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P------- 167 (353)
T cd00674 96 FGCCE-SYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYP------- 167 (353)
T ss_pred cCCCH-HHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCcee-------
Confidence 99877 9999999999999999999999777777777779999999999999998531111000011122222
Q ss_pred CCCCccccCCCCCccccccCCCCCCC---c----cCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCC
Q 006917 166 CPTLGCNYDSARGDQCEKCGKLLNPT---E----LKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWS 238 (625)
Q Consensus 166 cp~~~c~~~~~~g~~ce~cg~~~~~~---~----l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~ 238 (625)
+-..|++||+.-.+. + -+...| .||+..+......= -+.+|.++|+
T Consensus 168 -----------~~p~c~~cg~~~~~v~~~d~~~~~v~y~c-~cG~~g~~~~~~g~---------------~KL~Wr~dW~ 220 (353)
T cd00674 168 -----------FMPYCEKCGKDTTTVEAYDAKAGTVTYKC-ECGHEETVDIRTGR---------------GKLTWRVDWP 220 (353)
T ss_pred -----------eeeecCCcCcceeEEEEEeCCCCeEEEEc-CCCCEEEEeecCCC---------------cccCCCCCch
Confidence 244677777542111 0 012244 36666543221100 0111111121
Q ss_pred hhHHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeec
Q 006917 239 QNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKD 318 (625)
Q Consensus 239 ~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD 318 (625)
- . |+--..| +-+.|+|
T Consensus 221 ~----------------------------------------------------------r---W~~l~Vd---~E~~GkD 236 (353)
T cd00674 221 M----------------------------------------------------------R---WAILGVD---FEPFGKD 236 (353)
T ss_pred h----------------------------------------------------------h---hhhcCCC---EEeeCcc
Confidence 1 1 1111234 7789999
Q ss_pred ccch---hHhHHHHHhh-cCCCCccCcceEEeeeeeecCCc-cccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCC
Q 006917 319 NAPF---HTVMFPSTLL-GTEENWTLMKTISVTEYLNYEAG-KFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSD 393 (625)
Q Consensus 319 ~~~f---H~~~~pa~l~-a~~~~~~~~~~i~~hg~l~~~G~-KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d 393 (625)
|.-. +.... +++. .+|.+ +| ..++|||++++|. |||||+||+|++.|+++ .+++|++|||+++.....++
T Consensus 237 h~~~ggs~~~~~-~i~~~ilg~~--~P-~~~~ye~V~l~gg~KMSKSkGnvI~~~dll~-~~~~dalR~~~l~~~~~~~~ 311 (353)
T cd00674 237 HASAGGSYDTGK-EIAREIFGGE--PP-VPVMYEFIGLKGGGKMSSSKGNVITPSDWLE-VAPPEVLRYLYARRKNPEKH 311 (353)
T ss_pred ccccccHHHHHH-HHHHHHhCCC--CC-eEEEeeeEEeCCCCccCCCCCCcCCHHHHHH-HhChHHHHHHHHhCCCCCCC
Confidence 9744 33332 3344 56653 45 4588999998776 99999999999999998 69999999999985547799
Q ss_pred CCcCHHH
Q 006917 394 TLFTWED 400 (625)
Q Consensus 394 ~~fs~~~ 400 (625)
++|+++.
T Consensus 312 i~Fd~~~ 318 (353)
T cd00674 312 IGFDLDI 318 (353)
T ss_pred CCcChhH
Confidence 9999863
No 62
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-31 Score=297.37 Aligned_cols=340 Identities=11% Similarity=0.105 Sum_probs=244.7
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHH---cCC-----------
Q 006917 23 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAME---ENC----------- 88 (625)
Q Consensus 23 ~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~---~g~----------- 88 (625)
.++++.|....|+|+|++||||+|+++| +|+++|.++..||+|.....++|.|.++-..+.. .|.
T Consensus 111 ~~~~v~vE~sSpNp~kplHvGH~R~aii-Gd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 189 (562)
T PRK12451 111 CEKTVVIDYSSPNIAKPFSMGHLRSTMI-GNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRE 189 (562)
T ss_pred CCCEEEEEecCCCCCCCcccchhhhHHH-HHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHH
Confidence 3578999999999999999999999766 9999999999999999999999999877655411 110
Q ss_pred --------------------------------C------HHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHH
Q 006917 89 --------------------------------T------TQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAI 130 (625)
Q Consensus 89 --------------------------------~------~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~ 130 (625)
+ .+.+++...+.|++++++|||.+|.|. .+..|...+.++
T Consensus 190 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~--~es~~~~~~~~v 267 (562)
T PRK12451 190 LFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQ--GEAFYNDLMEDF 267 (562)
T ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeec--chHhhhhhHHHH
Confidence 0 233455667789999999999999654 333677778999
Q ss_pred HHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEec
Q 006917 131 FKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDT 210 (625)
Q Consensus 131 ~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~ 210 (625)
+++|.++|++|+.++..|.+.+. +|+ +..+..++.
T Consensus 268 ~~~L~~~g~~~e~dGa~~~~~~~-----------------------~g~----------------------~~~vl~ksD 302 (562)
T PRK12451 268 IGILEEHDLLEESEGALVVNLEE-----------------------EGM----------------------PPCLIRKSD 302 (562)
T ss_pred HHHHHHCCCEEecCCeEEEEecc-----------------------cCC----------------------CceEEEeCC
Confidence 99999999999888877654210 000 011222222
Q ss_pred cceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHH
Q 006917 211 DHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYIS 290 (625)
Q Consensus 211 ~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~ 290 (625)
..+ +|.--| ++|+-
T Consensus 303 Gt~----------------------------------------------------------------~Y~t~D--iA~~~ 316 (562)
T PRK12451 303 GAT----------------------------------------------------------------IYATRD--LTAAL 316 (562)
T ss_pred Ccc----------------------------------------------------------------ccchhH--HHHHH
Confidence 222 111111 11110
Q ss_pred hccCCChhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhh
Q 006917 291 ITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDV 370 (625)
Q Consensus 291 ~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~ 370 (625)
. .++++ ..| ++|+|+|.||..+...++ +.+.++|..+..--.++.+|+|+++|+||||++||+|+++|+
T Consensus 317 ~------k~~~~---~~d-~~IyV~g~dq~~h~~~l~-~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dL 385 (562)
T PRK12451 317 Y------RQNTF---GFD-KALYVVGPEQSLHFNQFF-TVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEV 385 (562)
T ss_pred H------Hhhcc---CCC-EEEEEeCCcHHHHHHHHH-HHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHH
Confidence 0 01110 122 457888888754333333 556677753211234567788999999999999999999999
Q ss_pred hhc------------------------CCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhC
Q 006917 371 KDT------------------------NIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAK 426 (625)
Q Consensus 371 l~~------------------------~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k 426 (625)
+++ ..|.+++||++++ ....++++|+|+.+.. .+++...++++.+.|++++++|
T Consensus 386 ldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~-~~~~~~~~Fd~d~~l~-~~g~t~pYiQYa~AR~~SIlrk 463 (562)
T PRK12451 386 LEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLK-NERMHNIEFSLENMLK-FEGETGPYVQYTHARACSILRK 463 (562)
T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhh-cCCCCCceECHHHHhC-cCCCccHHHHHHHHHHHHHHHh
Confidence 984 2679999999999 4455999999999765 4556677999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhccc
Q 006917 427 PPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQF 494 (625)
Q Consensus 427 ~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~p 494 (625)
... + .........++.+..|+..+..+++.+.+++++++++.++.+++++++.+|+|++.++-
T Consensus 464 a~~---~--~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~V 526 (562)
T PRK12451 464 ESV---E--FETCTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVRI 526 (562)
T ss_pred cCC---C--ccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 321 1 11000112356788999999999999999999999999999999999999999988753
No 63
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-31 Score=289.93 Aligned_cols=343 Identities=16% Similarity=0.174 Sum_probs=251.0
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHH-----------------
Q 006917 23 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAME----------------- 85 (625)
Q Consensus 23 ~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~----------------- 85 (625)
.++++.|....|+|+|++||||+|+++| +|+++|.++..||+|.....++|.|.+|-..+..
T Consensus 115 ~~~kV~iE~sSaNptkplHiGHlR~aii-GDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~ 193 (577)
T COG0018 115 KGKKVVIEYSSANPTGPLHIGHLRNAII-GDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDG 193 (577)
T ss_pred CCCEEEEEEeCCCCCCCcccchhhhhHH-HHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcch
Confidence 4578999999999999999999999766 9999999999999999999999998887654410
Q ss_pred ----------------cCC---------------C-----HHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHH
Q 006917 86 ----------------ENC---------------T-----TQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQA 129 (625)
Q Consensus 86 ----------------~g~---------------~-----~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~ 129 (625)
.+. . ++.+++.....+++++.+|||.+|.|...++..+...+..
T Consensus 194 ~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~ 273 (577)
T COG0018 194 YLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEK 273 (577)
T ss_pred HHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHH
Confidence 010 0 0125677788899999999999999988888888889999
Q ss_pred HHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEe
Q 006917 130 IFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRD 209 (625)
Q Consensus 130 ~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~ 209 (625)
++..|.++|++|+.++..+-
T Consensus 274 vv~~L~~~~~~~e~~GA~~v------------------------------------------------------------ 293 (577)
T COG0018 274 VVEDLEEKGLLYEDDGALVV------------------------------------------------------------ 293 (577)
T ss_pred HHHHHHhcCCEeeeCCeEEE------------------------------------------------------------
Confidence 99999999999985544321
Q ss_pred ccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHH
Q 006917 210 TDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYI 289 (625)
Q Consensus 210 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi 289 (625)
++++|. +. ...+|..|.|+ ++.++|.--| ++|.
T Consensus 294 ------dl~~~~-------~~--------------------gd~~~~vl~KS------------DGt~lY~t~D--IAy~ 326 (577)
T COG0018 294 ------DLLKFK-------KF--------------------GDDKDRVLQKS------------DGTYLYFTRD--IAYH 326 (577)
T ss_pred ------ehhhhh-------hc--------------------CCCCCeEEEEc------------CCCeeeehhH--HHHH
Confidence 111111 00 01123334443 3445544333 2222
Q ss_pred HhccCCChhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCccCcceEEee-e--eeec-CCccccccCCccc
Q 006917 290 SITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVT-E--YLNY-EAGKFSKSKGVGV 365 (625)
Q Consensus 290 ~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~h-g--~l~~-~G~KMSKS~GN~I 365 (625)
-. .++ + ..| ++|+|+|.||.-+-..+|- .+..+|.. +++.++.| + ++.. +|.||||+.|++|
T Consensus 327 ~~------K~~--~--~~d-~~IyV~gadq~~~~~ql~~-~l~~~g~~--~~~~~~~h~~~~l~~~~~g~kmStR~G~~v 392 (577)
T COG0018 327 LY------KFE--R--GFD-KLIYVLGADQHGHFKQLKA-VLELLGYG--PDKEVLLHQGVGLVRGGEGVKMSTRAGNVV 392 (577)
T ss_pred HH------HHh--c--CCC-EEEEEeCCcchhHHHHHHH-HHHHhcCC--CccceEEEEEEeeeECCCCccccccCCceE
Confidence 10 011 1 123 5689999999765555553 34556665 33334444 3 3443 7889999999999
Q ss_pred CchhhhhcCCC----------------------chhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 006917 366 FGNDVKDTNIP----------------------AEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSF 423 (625)
Q Consensus 366 ~~~d~l~~~~g----------------------~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~ 423 (625)
+++|+++ ..+ .|++||++++.++ .++++|+|+.+.+ ++++.+.++++++.|++++
T Consensus 393 tl~dlld-e~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~-~~~~~Fd~d~~ls-fegNt~pYvQYA~ARi~SI 469 (577)
T COG0018 393 TLDDLLD-EAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSR-DKDYVFDWDKALS-FEGNTAPYVQYAHARICSI 469 (577)
T ss_pred EHHHHHH-HHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCC-CCCcEeeHHHHHh-ccCCCchhHHHHHHHHHHH
Confidence 9999998 455 9999999999554 5999999999997 5569999999999999999
Q ss_pred hhCCCCCCCCCCCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhccc
Q 006917 424 IAKPPGRGYGSIIPDSP---KADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQF 494 (625)
Q Consensus 424 ~~k~~~~~~~~~~p~~~---~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~p 494 (625)
++|.... ..+... .......+..|+..+..++..+.++.+++++|..+.++.+|+..+|+|++.++-
T Consensus 470 lrka~e~----~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~V 539 (577)
T COG0018 470 LRKAGED----ELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACPV 539 (577)
T ss_pred HHhcccc----ccccccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhCCc
Confidence 9984211 111110 122334478899999999999999999999999999999999999999999863
No 64
>PLN02286 arginine-tRNA ligase
Probab=99.97 E-value=2.9e-29 Score=277.85 Aligned_cols=341 Identities=12% Similarity=0.100 Sum_probs=241.4
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc----CC----------
Q 006917 23 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE----NC---------- 88 (625)
Q Consensus 23 ~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~----g~---------- 88 (625)
++++++|....|+|+|++||||+|+++| +|+++|.++..||+|.....+.|.|.++-..+... +.
T Consensus 115 ~~~~v~VEfsSpNp~kplHvGHlRsaii-GdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~ 193 (576)
T PLN02286 115 PVKRAVVDFSSPNIAKEMHVGHLRSTII-GDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIG 193 (576)
T ss_pred CCceEEEEecCCCCCCCCccccccchhh-HHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHH
Confidence 4478999999999999999999999766 99999999999999999999999998876554211 10
Q ss_pred ---------------C------------------------HHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHH
Q 006917 89 ---------------T------------------------TQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQA 129 (625)
Q Consensus 89 ---------------~------------------------~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~ 129 (625)
+ ++.+++.....|++.+++|||++|.+ .+..|...+..
T Consensus 194 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~---ges~y~~~~~~ 270 (576)
T PLN02286 194 DLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEK---GESFYNPYIPG 270 (576)
T ss_pred HHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec---CchhhhhhHHH
Confidence 0 11334445567889999999999973 34457777899
Q ss_pred HHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEe
Q 006917 130 IFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRD 209 (625)
Q Consensus 130 ~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~ 209 (625)
+++.|.++|++|+.++..|.+.. +. + ...+..++
T Consensus 271 vi~~L~~~g~~~e~dGa~~v~l~------~~-----------------~-----------------------~~~vl~ks 304 (576)
T PLN02286 271 VIEELESKGLVVESDGARVIFVE------GF-----------------D-----------------------IPLIVVKS 304 (576)
T ss_pred HHHHHHHCCCEEeeCCceEeecc------CC-----------------C-----------------------CceEEEEC
Confidence 99999999999988777664211 00 0 01111222
Q ss_pred ccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHH
Q 006917 210 TDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYI 289 (625)
Q Consensus 210 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi 289 (625)
...+ +|.--| ++|.
T Consensus 305 DGt~----------------------------------------------------------------tY~t~D--IA~~ 318 (576)
T PLN02286 305 DGGF----------------------------------------------------------------NYASTD--LAAL 318 (576)
T ss_pred CCch----------------------------------------------------------------hhHHHH--HHHH
Confidence 2111 111111 1111
Q ss_pred HhccCCChhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCcc---CcceEEeeeeee-cCCccccccCCccc
Q 006917 290 SITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWT---LMKTISVTEYLN-YEAGKFSKSKGVGV 365 (625)
Q Consensus 290 ~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~---~~~~i~~hg~l~-~~G~KMSKS~GN~I 365 (625)
- ..++++ ..| ++|+|+|.||..+...++ +++.++|..+. -.-.++.+|+|+ .+|+||||++||+|
T Consensus 319 ~------~k~~~~---~~d-~~IyVvg~~q~~hf~~v~-~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v 387 (576)
T PLN02286 319 W------YRLNEE---KAE-WIIYVTDVGQQQHFDMVF-KAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVV 387 (576)
T ss_pred H------HHHhcc---CCC-EEEEEEeCcHHHHHHHHH-HHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCee
Confidence 0 001111 012 457778888764333333 56677775321 123567789997 78999999999999
Q ss_pred Cchhhhhc----------------------------CCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHH
Q 006917 366 FGNDVKDT----------------------------NIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFV 417 (625)
Q Consensus 366 ~~~d~l~~----------------------------~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~ 417 (625)
+++|++++ .+|.+++||++++. ...++++|+|+.+.+ .+++...+++|.+
T Consensus 388 ~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~-~~~~~~~Fd~d~~l~-~~g~t~pYlQYah 465 (576)
T PLN02286 388 RLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKN-NRLTNYTFSFDQMLD-LKGNTAVYLLYAH 465 (576)
T ss_pred EHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhc-CCCCCCccCHHHHHh-hcCCChHHHHHHH
Confidence 99999983 35689999999994 455999999999875 6677777999999
Q ss_pred HHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhcc
Q 006917 418 NRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQ 493 (625)
Q Consensus 418 ~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~ 493 (625)
.|++++++|.... .............++.++.|+..+..+++.+.++.++++++..+.++.+|+..+|+|++.++
T Consensus 466 AR~~SIlrKa~~~-~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY~~~~ 540 (576)
T PLN02286 466 ARICSIIRKSGKD-IDELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCK 540 (576)
T ss_pred HHHHHHHHhccCc-cccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999984210 00000000112336778899999999999999999999999999999999999999998774
No 65
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=1.8e-31 Score=290.98 Aligned_cols=268 Identities=19% Similarity=0.222 Sum_probs=182.8
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccch--------HH-HHHHHHcCCC-------
Q 006917 26 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGT--------AT-ETKAMEENCT------- 89 (625)
Q Consensus 26 ~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~--------~i-~~~a~~~g~~------- 89 (625)
.++|++++ ||||.+||||+++ ++.+|+++|++|++|++|.+++|+||||. |. +..++..|+.
T Consensus 24 ~~~~~~g~-~psG~~HiG~~~e-~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p 101 (510)
T PRK00750 24 PVVVETGI-GPSGLPHIGNFRE-VARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDP 101 (510)
T ss_pred cEEEEeCC-CCCCCcccccccc-hhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCC
Confidence 47777777 7999999999998 67899999999999999999999999973 32 2344444443
Q ss_pred ---HHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCC
Q 006917 90 ---TQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSC 166 (625)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~c 166 (625)
++++++++.+.|++.++.|||++|.+.+|....+..+.+.+...|.+++.|..--.+.-=....++++|
T Consensus 102 ~G~~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P-------- 173 (510)
T PRK00750 102 FGCHESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSP-------- 173 (510)
T ss_pred CCCchHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeee--------
Confidence 899999999999999999999999766665555567778888888888887532111100112222222
Q ss_pred CCCccccCCCCCccccccCCCCCCC----cc----CCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCC
Q 006917 167 PTLGCNYDSARGDQCEKCGKLLNPT----EL----KDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWS 238 (625)
Q Consensus 167 p~~~c~~~~~~g~~ce~cg~~~~~~----~l----~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~ 238 (625)
+-..|++||+..... +. +...| .||+..+...++.- -+.+|.++|+
T Consensus 174 ----------~~pic~~cg~~~~~~~~~~d~~~~~v~y~~-~cG~~~~~~~~~g~---------------~KL~Wr~dW~ 227 (510)
T PRK00750 174 ----------FLPICPKCGKVLTTPVISYDAEAGTVTYDC-ECGHEGEVPVTGGH---------------GKLQWKVDWP 227 (510)
T ss_pred ----------eeeeCCCCCccceEEEEEEeCCCCEEEEEc-CCCCEEEEecCCCC---------------cccCCCCCcH
Confidence 344678888875422 11 11123 36666543222100 0111111122
Q ss_pred hhHHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeec
Q 006917 239 QNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKD 318 (625)
Q Consensus 239 ~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD 318 (625)
. +|+--..| +-..|+|
T Consensus 228 ----------------------------------------------------------~---rW~~l~Vd---~e~~GkD 243 (510)
T PRK00750 228 ----------------------------------------------------------M---RWAALGVD---FEPFGKD 243 (510)
T ss_pred ----------------------------------------------------------H---HHHHcCCC---EEeeCcc
Confidence 1 11111234 7789999
Q ss_pred ccc-hhHhHHHHHhh-cCCCCccCcceEEeeeeeecC-CccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCC
Q 006917 319 NAP-FHTVMFPSTLL-GTEENWTLMKTISVTEYLNYE-AGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTL 395 (625)
Q Consensus 319 ~~~-fH~~~~pa~l~-a~~~~~~~~~~i~~hg~l~~~-G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~ 395 (625)
|.. .+.. ...++. .+|.+ +|.. ++|||++.+ |+|||||+||+|++.|+++ .+++|++|||++...+..++++
T Consensus 244 h~~~s~~~-~~~i~~~ilg~~--~P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~-~~~pd~lR~~l~~~~~~~~~~~ 318 (510)
T PRK00750 244 HASASYDT-SKKIAREILGGE--PPEP-FVYELFLDKKGEKISKSKGNVITIEDWLE-YAPPESLRLFMFARPKPAKRLD 318 (510)
T ss_pred cCcchHHH-HHHHHHHHcCCC--CCee-eeeeeEEeCCCCcccccCCCccCHHHHHH-HCCHHHHHHHHHhCCCCCCCCc
Confidence 987 4332 223444 56653 5544 789999987 9999999999999999998 7999999998887678889999
Q ss_pred cCH
Q 006917 396 FTW 398 (625)
Q Consensus 396 fs~ 398 (625)
|++
T Consensus 319 f~~ 321 (510)
T PRK00750 319 FDV 321 (510)
T ss_pred ccH
Confidence 998
No 66
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.95 E-value=5.4e-27 Score=229.29 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=113.9
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006917 26 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVY 105 (625)
Q Consensus 26 ~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 105 (625)
++.|..++|||||++||||+|++ +.+|+++|++++.|++|.++.++||+|+||...|.+.+ .++++++.+.+.|++++
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~-vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~~ 78 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNA-IIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLETY 78 (212)
T ss_pred CeEEEecCCCCCCCccccccHHH-HHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 47889999999999999999996 55999999999999999999999999999999997764 48999999999999999
Q ss_pred hhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCC
Q 006917 106 NWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTC 153 (625)
Q Consensus 106 ~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~ 153 (625)
++|||++|.|.+|++ +...++++++.|.++|++|+..+.+|||+.+
T Consensus 79 ~~L~i~~d~~~~es~--~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 79 GRLDVRFDVWFGESS--YLGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HHhCCcCceecchhh--hhhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 999999999998885 4889999999999999999999888887653
No 67
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.94 E-value=2.1e-27 Score=256.83 Aligned_cols=267 Identities=18% Similarity=0.220 Sum_probs=171.2
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCccc------------------chHHHHHHHHc
Q 006917 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEY------------------GTATETKAMEE 86 (625)
Q Consensus 25 ~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~------------------G~~i~~~a~~~ 86 (625)
.+++|+|+++ |||.+||||+++ ++.+|+++|++|++|++|.+++++||| |.|+...+...
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e-~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~ 95 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFRE-VITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPE 95 (515)
T ss_pred CeEEEecCCC-CCCCccccchhh-hhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCC
Confidence 4688999986 999999999998 688999999999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcccccccCCC---ChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccc
Q 006917 87 NCTTQQICDKYYAIHKAVYNWFNISFDEFGRTS---TPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVE 163 (625)
Q Consensus 87 g~~~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~---~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~ 163 (625)
|+. ..+++++.+.|.+.|+.|||+++....|. +-.|.+.+..++++-.+-.-|...... ....++++|
T Consensus 96 g~~-~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~---~~~~~~~~P----- 166 (515)
T TIGR00467 96 GCK-TSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYASQIKIALDHRKEISEILNEYRT---SKLEENWYP----- 166 (515)
T ss_pred CCc-HHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcC---CccCCCcee-----
Confidence 986 99999999999999999999998543222 112333333333222111111100000 011122222
Q ss_pred cCCCCCccccCCCCCccccccCCCCCCCc------cCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCC
Q 006917 164 GSCPTLGCNYDSARGDQCEKCGKLLNPTE------LKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSW 237 (625)
Q Consensus 164 g~cp~~~c~~~~~~g~~ce~cg~~~~~~~------l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~ 237 (625)
+-..|++||+...+.. -+...| .||+..+...+..- -+.+|.++|
T Consensus 167 -------------~~pic~~cGrv~~~~~~~~~~~~v~Y~c-~cG~~g~~~~~~g~---------------~KL~WkvdW 217 (515)
T TIGR00467 167 -------------ISVFCENCGRDTTTVNNYDNEYSIEYSC-ECGNQESVDIYTGA---------------IKLPWRVDW 217 (515)
T ss_pred -------------eeeecCCcCccCceEEEecCCceEEEEc-CCCCEEEEeecCCC---------------cccCCCCCc
Confidence 2446778888754321 122345 37776654322110 011222222
Q ss_pred ChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEee
Q 006917 238 SQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGK 317 (625)
Q Consensus 238 ~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~Gk 317 (625)
+-+ | +--..| +--.||
T Consensus 218 ~~R-------W------------------------------------------------------~~lgV~---~Ep~Gk 233 (515)
T TIGR00467 218 PAR-------W------------------------------------------------------KIEKVT---FEPAGK 233 (515)
T ss_pred Hhh-------H------------------------------------------------------hhhCcc---cccCCC
Confidence 211 1 100112 333577
Q ss_pred cccc----hhHhHHHHHhhcCCCCccCcceEEeeeeeec--CCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCC
Q 006917 318 DNAP----FHTVMFPSTLLGTEENWTLMKTISVTEYLNY--EAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEV 391 (625)
Q Consensus 318 D~~~----fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~~--~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~ 391 (625)
||.- +-.....|. .++|. .+|.. +.++|+.+ +|+|||||+||+|+++|+++ .+++|++||++++ .++.
T Consensus 234 DH~~~ggsy~~~~~ia~-~~l~~--~~P~~-~~ye~v~L~~~g~KMSKS~Gn~itl~dll~-~~~pdalR~~~l~-~~~~ 307 (515)
T TIGR00467 234 DHAAAGGSYDTGVNIAK-EIFQY--SPPVT-VQYEWISLKGKGGKMSSSKGDVISVKDVLE-VYTPEITRFLFAR-TKPE 307 (515)
T ss_pred CccCccCCchhHHHHHH-HHhCC--CCCcC-cEEEEEEEcCCCccccCCCCCCccHHHHHH-HcCHHHHHHHHhc-cCCC
Confidence 7753 222222222 35543 24443 44677644 56799999999999999998 6999999999887 6677
Q ss_pred CCCCcCHHHH
Q 006917 392 SDTLFTWEDF 401 (625)
Q Consensus 392 ~d~~fs~~~~ 401 (625)
++++|+++.+
T Consensus 308 ~~ldFd~~~l 317 (515)
T TIGR00467 308 FHISFDLDVI 317 (515)
T ss_pred CCCcCCHHHH
Confidence 9999999976
No 68
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.86 E-value=1.9e-21 Score=204.27 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=98.5
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHH----------------
Q 006917 22 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAME---------------- 85 (625)
Q Consensus 22 ~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~---------------- 85 (625)
..+++++|..+.|+|+|++||||+|+++| +|+++|.++..||+|.....+.|.|.++...+..
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~ii-Gd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~ 95 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNTII-GDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIK 95 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHHHH-HHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhhhh-hHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhccccccc
Confidence 46678999999999999999999999766 9999999999999999999999999988765511
Q ss_pred ---------------cCC------------------------CHHHHHHH-HHHHHHHHHhhcCcccccccCCCChhHHH
Q 006917 86 ---------------ENC------------------------TTQQICDK-YYAIHKAVYNWFNISFDEFGRTSTPQQTE 125 (625)
Q Consensus 86 ---------------~g~------------------------~~~~~~~~-~~~~~~~~~~~lgi~~D~~~~t~~~~~~~ 125 (625)
... ...++... ..+.++++++++++.+|.+....+..+..
T Consensus 96 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E~Es~~~~ 175 (354)
T PF00750_consen 96 HLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDESESFYSG 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEHCHHHHTT
T ss_pred chhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccchhhhhh
Confidence 000 11223333 56678899999999999887667667888
Q ss_pred HHHHHHHHHHHCCCEEEeeeeeeeeC
Q 006917 126 ICQAIFKKLLENNWLSEYTTQQLYCD 151 (625)
Q Consensus 126 ~v~~~~~~L~~~G~iy~~~~~~~y~~ 151 (625)
.+.+++++|.++|++|+.++..|...
T Consensus 176 ~v~~vl~~L~e~g~~~~~dGa~~i~~ 201 (354)
T PF00750_consen 176 KVDEVLERLKEKGLLYESDGALWIDL 201 (354)
T ss_dssp HHHHHHHHHHCTTTEEEETTEEEEEG
T ss_pred HHHHHHHHHHhCCcEEecCCcEEEec
Confidence 89999999999999998887776644
No 69
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.82 E-value=1.1e-21 Score=200.13 Aligned_cols=262 Identities=20% Similarity=0.268 Sum_probs=123.7
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccch--HHHHHH-----HH-cCC-------
Q 006917 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGT--ATETKA-----ME-ENC------- 88 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~--~i~~~a-----~~-~g~------- 88 (625)
+..++|.+++ +|+|.+|||++|. ++.+|+++|.++.+|.+|.++..+||.+- ||-... ++ .|+
T Consensus 22 ~~~~v~~sG~-sPSG~~HIGn~rE-v~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPd 99 (360)
T PF01921_consen 22 KEPYVFASGI-SPSGLPHIGNFRE-VLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPD 99 (360)
T ss_dssp -SEEEEEEEE---SS---HHHHHH-HHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-
T ss_pred CccEEEecCC-CCCCCcccccccc-hhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCC
Confidence 3445555555 9999999999998 67899999999999999999999999753 111111 11 121
Q ss_pred ---CHHHHHHHHHHHHHHHHhhcCcccccccCCC---Chh----------HHHHHHHHHHHHHHCCCEEEeeeeeeeeCC
Q 006917 89 ---TTQQICDKYYAIHKAVYNWFNISFDEFGRTS---TPQ----------QTEICQAIFKKLLENNWLSEYTTQQLYCDT 152 (625)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~---~~~----------~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~ 152 (625)
....|++++.+.|.+.|+.|||.++.+..|. +-. +...+.+++.+-.... ..
T Consensus 100 P~G~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~--~~---------- 167 (360)
T PF01921_consen 100 PFGCHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE--RP---------- 167 (360)
T ss_dssp TTSSSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT--------------
T ss_pred CCCCCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC--CC----------
Confidence 2467899999999999999999997554332 112 2333444444332211 11
Q ss_pred CCccccccccccCCCCCccccCCCCCccccccCCCCCCC--------ccCCCccccCCCccEEEeccceeeeccchHHHH
Q 006917 153 CKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPT--------ELKDPRCKVCQATPKIRDTDHLFLELPLIKDKL 224 (625)
Q Consensus 153 ~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~--------~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l 224 (625)
+++++ +-..|+.||+..... .-+...|..||+..+...++.- -+|..-.||.
T Consensus 168 -~~y~P------------------f~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~-gKL~WkvDW~ 227 (360)
T PF01921_consen 168 -ETYSP------------------FLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGN-GKLQWKVDWP 227 (360)
T ss_dssp -TT--S------------------EEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT--EEE-HHHHHH
T ss_pred -CCeee------------------eeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCc-ccccCCCcCh
Confidence 11111 233566677643211 1233567677777664433311 2222111111
Q ss_pred HHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcC
Q 006917 225 EEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWK 304 (625)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~ 304 (625)
. +|+-
T Consensus 228 m---------------------------------------------------------------------------RW~~ 232 (360)
T PF01921_consen 228 M---------------------------------------------------------------------------RWAA 232 (360)
T ss_dssp H---------------------------------------------------------------------------HHHH
T ss_pred h---------------------------------------------------------------------------hhhh
Confidence 1 1111
Q ss_pred CCCCcceEEEEeecccchhHhHHHH--Hh-hcCCCCccCcceEEeeeeeecCCc-cccccCCcccCchhhhhcCCCchhH
Q 006917 305 NPENVALYQFMGKDNAPFHTVMFPS--TL-LGTEENWTLMKTISVTEYLNYEAG-KFSKSKGVGVFGNDVKDTNIPAEVW 380 (625)
Q Consensus 305 ~p~d~~~i~~~GkD~~~fH~~~~pa--~l-~a~~~~~~~~~~i~~hg~l~~~G~-KMSKS~GN~I~~~d~l~~~~g~D~l 380 (625)
-..| +--.||||.-.=..+=.+ +. .-+|. .|...+..+|+.++|. |||||+||+|+++|+|+ .+.+++|
T Consensus 233 lgVd---fEp~GKDH~~~GGS~d~~~~I~~~i~g~---~pP~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~-~~~PE~l 305 (360)
T PF01921_consen 233 LGVD---FEPFGKDHASPGGSYDTSKRIAREILGY---EPPVPFPYEFFLDKGGGKMSSSKGNGITPEEWLE-YAPPESL 305 (360)
T ss_dssp TT-S---EEEEEHHHHCTTSHHHHHHHHHHHCC--------EEEEE--EEES--------------HHHHHT-TS-HHHH
T ss_pred cCce---eccCCCccCCCCCChhhHHHHHHHHhCC---CCCCCCCeeEEEeCCCcccccCCCCccCHHHHHH-hcCHHHH
Confidence 1123 556799986522111111 12 23454 2345677899888777 99999999999999998 8999999
Q ss_pred HHHHHhcCCCCCCCCcCHH-HHH
Q 006917 381 RYYLITNRPEVSDTLFTWE-DFQ 402 (625)
Q Consensus 381 R~~ll~~~~~~~d~~fs~~-~~~ 402 (625)
||++++..| .+..+|+.+ .+.
T Consensus 306 r~l~~~~~P-~~~~~~~~~~~i~ 327 (360)
T PF01921_consen 306 RYLMARTKP-NKAKDFSFDLVIP 327 (360)
T ss_dssp HHHHHCS-T-TS-EEE--STTHH
T ss_pred HHHHcccCC-CcceEeccCcchH
Confidence 999998444 466666666 443
No 70
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.80 E-value=8.7e-19 Score=160.78 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=73.7
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006917 29 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYN 106 (625)
Q Consensus 29 i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 106 (625)
|++++|||||++||||+|+ ++.+|+++|++|++|++|.+++|+||+|+++...|.+.+.+++++++.+.+.|+++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~-~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRT-IVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred CEecCCCCCCCccHhHHHH-HHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4678899999999999998 5679999999999999999999999999999999999999999999999999999988
No 71
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.3e-18 Score=181.86 Aligned_cols=90 Identities=18% Similarity=0.282 Sum_probs=71.7
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccch--------HHHHHHHH-cCC-------
Q 006917 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGT--------ATETKAME-ENC------- 88 (625)
Q Consensus 25 ~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~--------~i~~~a~~-~g~------- 88 (625)
..++|.|++ +|+|.+|||++|. ++++|+++|.+|.+|++|.+++-+||++- |-....++ .|+
T Consensus 19 ~~~~v~tGi-sPSG~~HIGn~rE-v~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPd 96 (521)
T COG1384 19 DEYVVATGI-SPSGLIHIGNFRE-VLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPD 96 (521)
T ss_pred CcEEEecCc-CCCCCcccccHHH-HHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCC
Confidence 446666665 9999999999998 68899999999999999999999999853 11122222 233
Q ss_pred ---CHHHHHHHHHHHHHHHHhhcCccccccc
Q 006917 89 ---TTQQICDKYYAIHKAVYNWFNISFDEFG 116 (625)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~~lgi~~D~~~ 116 (625)
.+..|++++.+.|.+.++.|||.+..+.
T Consensus 97 P~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~s 127 (521)
T COG1384 97 PFGCCDSYAEHFLRPFEEFLDEFGIEVEFVS 127 (521)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCceEEEE
Confidence 4678999999999999999999988553
No 72
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.76 E-value=5.7e-18 Score=152.47 Aligned_cols=128 Identities=35% Similarity=0.598 Sum_probs=113.1
Q ss_pred HhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 006917 405 LNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSE 484 (625)
Q Consensus 405 ~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~ 484 (625)
+|+++++++||+++|+.+++.+ .+++.+|... .....|+|+++.++++.+.+.++|++|+++.|+..++++++.
T Consensus 1 ~n~~l~~~~gnll~r~~~~~~~----~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 74 (129)
T cd07957 1 INSELANNLGNLVNRTLNMASK----YFGGVVPEFG--GLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARA 74 (129)
T ss_pred CcHHHHhhHhhHHHHHHHHHHH----HcCCcCCCCC--CCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3688999999999999999987 5677666532 134568899999999999999999999999999999999999
Q ss_pred HhHHHHhccccccccC-CHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHc
Q 006917 485 GNAYLQESQFWKLYNE-DQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQL 538 (625)
Q Consensus 485 ~N~y~~~~~pw~l~k~-~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L 538 (625)
+|+|++..+||++.++ +.+++..+++++.++++.++++|+||||++|+++|+.|
T Consensus 75 ~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 75 ANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 9999999999998865 45667788999999999999999999999999999875
No 73
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.68 E-value=1.8e-15 Score=164.48 Aligned_cols=292 Identities=17% Similarity=0.188 Sum_probs=164.5
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006917 26 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVY 105 (625)
Q Consensus 26 ~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 105 (625)
.-++|-.+|+|||+|||||||+++ ..+.+|| +|...|+.-+||.+.+|.. ....+.+.+.+++
T Consensus 100 g~V~tRFaPsPtG~LHIGharaal-ln~~~Ar-----~~~G~~iLRidDTDpk~~R-----------~~~e~~~~I~edL 162 (567)
T PRK04156 100 GKVVMRFAPNPSGPLHLGHARAAI-LNDEYAK-----MYGGKFILRFEDTDPRTKR-----------PDPEAYDMILEDL 162 (567)
T ss_pred CeEEEEeCCCCCCCccHHHHHHHH-HHHHHHH-----HcCCEEEEeEccCCCCccc-----------chHHHHHHHHHHH
Confidence 347788999999999999999865 5999999 5677777777887765522 1233447889999
Q ss_pred hhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccC
Q 006917 106 NWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCG 185 (625)
Q Consensus 106 ~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg 185 (625)
++||+.+|..++++ .|.....++.++|.++|++|. .+|+..+ +-..+.-...|| |.
T Consensus 163 ~wLGl~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~-----C~cs~ee-~~~~r~~g~~~~---~R------------- 218 (567)
T PRK04156 163 KWLGVKWDEVVIQS--DRLEIYYEYARKLIEMGGAYV-----CTCDPEE-FKELRDAGKPCP---HR------------- 218 (567)
T ss_pred HHcCCCCCCccCcc--cCHHHHHHHHHHHHHcCCCcc-----CCCCHHH-HHHHHhcCCCCC---Cc-------------
Confidence 99999999765555 677888899999999999994 2333321 100000000111 00
Q ss_pred CCCCCCccCCC-ccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCC
Q 006917 186 KLLNPTELKDP-RCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKW 264 (625)
Q Consensus 186 ~~~~~~~l~~~-~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~W 264 (625)
..++.+...- .....|.. .+..+-+++.- + + ..-...+.||.+-|..
T Consensus 219 -~~~~ee~l~~~e~m~~G~~----~~g~~vlR~k~------------d------------~-~~~n~~~rD~v~~R~~-- 266 (567)
T PRK04156 219 -DKSPEENLELWEKMLDGEY----KEGEAVVRVKT------------D------------L-EHPNPSVRDWVAFRIV-- 266 (567)
T ss_pred -CCCHHHHHHHHHHhhcCcc----ccCCeEEEEEC------------c------------c-cCCCCCccccEEEEEc--
Confidence 0000000000 00000000 00011111110 0 0 0001124577666642
Q ss_pred CcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEE-eecccchhHhHHHHHhhcCCCCccCcce
Q 006917 265 GVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFM-GKDNAPFHTVMFPSTLLGTEENWTLMKT 343 (625)
Q Consensus 265 Gi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~-GkD~~~fH~~~~pa~l~a~~~~~~~~~~ 343 (625)
+.+.|.++ ++-++ |.- -.++... + +....+.|++ |.|+.- ++.....++.++|. .. ..
T Consensus 267 ~~~h~~~G-d~~~i--~Pt---Y~fA~~V---D--------D~l~GITHViRg~d~~~-~t~~Q~~l~~~Lg~--~~-P~ 325 (567)
T PRK04156 267 KTPHPRVG-DKYRV--WPT---YNFAVAV---D--------DHLLGVTHVLRGKDHID-NTEKQRYIYDYFGW--EY-PE 325 (567)
T ss_pred CCCccccC-CCeEE--EEE---eccCcee---e--------ecCCCCCeEEccccccc-ChHHHHHHHHHcCC--CC-ce
Confidence 22333221 11122 211 0111100 0 0112245666 767652 11122234455564 33 45
Q ss_pred EEeeeeeecCCccccccC-------C--------cccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHH
Q 006917 344 ISVTEYLNYEAGKFSKSK-------G--------VGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTE 408 (625)
Q Consensus 344 i~~hg~l~~~G~KMSKS~-------G--------N~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~ 408 (625)
+.+++.|+.+|.|||||+ | +..++..+...++.++++|.|++..+.-.+|..|+++.+.+ .|++
T Consensus 326 ~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~-~nr~ 404 (567)
T PRK04156 326 TIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYA-INRK 404 (567)
T ss_pred EEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH-HHHH
Confidence 678899999999999998 4 34677778777899999999999866556999999999886 5666
Q ss_pred HHHH
Q 006917 409 LLNN 412 (625)
Q Consensus 409 l~~~ 412 (625)
.++.
T Consensus 405 ~ld~ 408 (567)
T PRK04156 405 LIDP 408 (567)
T ss_pred HHhc
Confidence 5544
No 74
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=8e-13 Score=133.81 Aligned_cols=343 Identities=13% Similarity=0.168 Sum_probs=227.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHH----HH--------
Q 006917 18 KLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKA----ME-------- 85 (625)
Q Consensus 18 ~~p~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a----~~-------- 85 (625)
..|.-..++++|.-+.|+.-..+|+||+|++ |.+|.++|.+...|++|+.+..+-|.|+..-... ++
T Consensus 181 ~~P~l~~KrvlVDFSSPNIAKeMHVGHLRST-IIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vs 259 (656)
T KOG4426|consen 181 KLPTLSVKRVLVDFSSPNIAKEMHVGHLRST-IIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVS 259 (656)
T ss_pred CCcccceeeEEEecCCCcHHHHhhhhhhhhh-hHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccC
Confidence 3576677889999999999999999999985 5599999999999999999988888877542211 00
Q ss_pred ----------------------------------cCC------CHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHH
Q 006917 86 ----------------------------------ENC------TTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTE 125 (625)
Q Consensus 86 ----------------------------------~g~------~~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~ 125 (625)
+|. .+..+|+-..++|...+++|.|+...- .+..|..
T Consensus 260 p~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~---GESFYq~ 336 (656)
T KOG4426|consen 260 PPIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKER---GESFYQD 336 (656)
T ss_pred CCchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhc---chhhhhh
Confidence 111 234578888889999999999987522 3457888
Q ss_pred HHHHHHHHHHHCCCEEEeeeee-eeeCCCCccccccccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCc
Q 006917 126 ICQAIFKKLLENNWLSEYTTQQ-LYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQAT 204 (625)
Q Consensus 126 ~v~~~~~~L~~~G~iy~~~~~~-~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~ 204 (625)
.+.++++.|..+|++.+.++.. .|-+. |+-|
T Consensus 337 ~m~~vveel~~kglvee~~Gr~i~f~~g------------------------------------------------~~IP 368 (656)
T KOG4426|consen 337 RMAEVVEELKSKGLVEEDDGRRIMFPEG------------------------------------------------CDIP 368 (656)
T ss_pred HHHHHHHHHhcCCceeecCCceEeccCC------------------------------------------------CCcc
Confidence 8999999999999999876543 22111 2334
Q ss_pred cEE-EeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeecc
Q 006917 205 PKI-RDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFD 283 (625)
Q Consensus 205 ~~~-~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfD 283 (625)
+.+ ++...+-.+.+++..- .--+.+...||.
T Consensus 369 LtvVKSDGGftYdtsDlaAl----------------------~yRl~EEkadwi-------------------------- 400 (656)
T KOG4426|consen 369 LTVVKSDGGFTYDTSDLAAL----------------------KYRLNEEKADWI-------------------------- 400 (656)
T ss_pred eEEEecCCCcccccchHHHH----------------------HHHHHHhhcCeE--------------------------
Confidence 333 3333333443332211 111122233442
Q ss_pred ccchHHHhccCCChhhHhhcCCCCCcceEEEEeeccc-chhHhHHHHHhhcCC-CCccCcceEE--eeeeee-cCCcccc
Q 006917 284 APIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNA-PFHTVMFPSTLLGTE-ENWTLMKTIS--VTEYLN-YEAGKFS 358 (625)
Q Consensus 284 a~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~-~fH~~~~pa~l~a~~-~~~~~~~~i~--~hg~l~-~~G~KMS 358 (625)
|++....+. .|.+++ -|- ..+| ++ +...++. ..|.|+ .+|+|+-
T Consensus 401 ----------------------------IYVvD~GQs~Hf~t~f-kAa-r~~gwld-~~~~RV~HvgFGlVLGeD~KkFk 449 (656)
T KOG4426|consen 401 ----------------------------IYVVDSGQSQHFNTIF-KAA-RKAGWLD-PTYPRVEHVGFGLVLGEDKKKFK 449 (656)
T ss_pred ----------------------------EEEeeCchhHHHHHHH-HHH-HHcCccC-CCccceeeeeeeeEEccCccccc
Confidence 333333332 233322 221 1122 11 1222333 335555 6888999
Q ss_pred ccCCcccCchhhhhcC----------------------------CCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHH
Q 006917 359 KSKGVGVFGNDVKDTN----------------------------IPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELL 410 (625)
Q Consensus 359 KS~GN~I~~~d~l~~~----------------------------~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~ 410 (625)
++.|.+|-+.|+|+++ ++-..+.|.-++ .+--.|.-||.|.+.+ -.++.+
T Consensus 450 TRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~-hnR~~dY~FSFDkML~-DrGnTA 527 (656)
T KOG4426|consen 450 TRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLS-HNRITDYIFSFDKMLE-DRGNTA 527 (656)
T ss_pred ccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhc-cccccceeeeHHHHhh-ccCcce
Confidence 9999998888877521 222347887787 4445899999999876 347788
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCC--CCCCCC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 006917 411 NNLGNFVNRVLSFIAKPPGRGYG--SIIPDS-PKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNA 487 (625)
Q Consensus 411 ~~l~n~~~R~~~~~~k~~~~~~~--~~~p~~-~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~ 487 (625)
-++-+++.|+++++++....+.+ ..+..+ ....+++-+..|-..+.++.+.+..+.+++-++..+.++.+++..+..
T Consensus 528 vYLLYa~tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~~~L~lh~lC~y~y~l~t~Ft~ 607 (656)
T KOG4426|consen 528 VYLLYAYTRICSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKALDSLFLHVLCDYLYELATLFTE 607 (656)
T ss_pred ehhHHHHHHHHHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999873211000 000111 123566777788889999999999999999999999999999999999
Q ss_pred HHHhcc
Q 006917 488 YLQESQ 493 (625)
Q Consensus 488 y~~~~~ 493 (625)
|++.+.
T Consensus 608 FY~~Cy 613 (656)
T KOG4426|consen 608 FYDSCY 613 (656)
T ss_pred HhhccE
Confidence 998874
No 75
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.60 E-value=1.2e-14 Score=128.36 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHH
Q 006917 406 NTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIG-MSISSE 484 (625)
Q Consensus 406 n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i-~~l~~~ 484 (625)
+.++++.++|+++|+.+++.+ .+++..|.. .....|+++++.++.+++++.++|++|+|+.|+..+ +++.+.
T Consensus 2 ~~~~~~~~~~~l~R~~~~~~~----~~~~~~~~~---~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~ 74 (117)
T cd07959 2 REEEANSAILRLERFYELAEE----LIETEGELE---ELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQND 74 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHH----HHhccCCcc---ccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 357889999999999999987 344444431 234678999999999999999999999999999997 899999
Q ss_pred HhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHc
Q 006917 485 GNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQL 538 (625)
Q Consensus 485 ~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L 538 (625)
+|+|++..+|| ....++.++++.++++|+||+|++||++|+.|
T Consensus 75 ~~~Y~~~~~~~-----------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 75 LDWYRERGGAG-----------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHHhCcc-----------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 99999988887 12357788999999999999999999999875
No 76
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.55 E-value=7.3e-14 Score=136.38 Aligned_cols=96 Identities=20% Similarity=0.283 Sum_probs=76.6
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
+++-..|+|||.+||||+++++ ..|+++| ++++.++..+||.+.+.+ + ....+.+.+.+++++
T Consensus 2 v~~RfaPsPtG~lHiG~~rtal-~~~l~Ar-----~~~G~~ilRieDtD~~r~--------~---~~~~~~~~i~~dL~w 64 (240)
T cd09287 2 VVMRFAPNPNGPLHLGHARAAI-LNGEYAK-----MYGGKFILRFDDTDPRTK--------R---PDPEAYDMIPEDLEW 64 (240)
T ss_pred ceEeCCCCCCCCccHHHHHHHH-HHHHHHH-----HcCCEEEEeeCcCCCCcc--------c---chHHHHHHHHHHHHH
Confidence 3577889999999999999865 5999999 678888888899887663 1 223334458999999
Q ss_pred cCcccccccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
||+.+|..++.+ ++....+++.++|.++|++|.
T Consensus 65 LGl~~d~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 65 LGVKWDEVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred cCCCCCCccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 999999554444 677888888999999999996
No 77
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.55 E-value=1.9e-13 Score=124.14 Aligned_cols=133 Identities=18% Similarity=0.200 Sum_probs=104.3
Q ss_pred cCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 006917 396 FTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGL 475 (625)
Q Consensus 396 fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~ 475 (625)
||.+.+... ..+..+++|++..+...+.. .+ .+..........|+++++.+..+++.+.++|+++++++|+
T Consensus 1 ~~~~~~~~~--~~~l~k~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al 71 (135)
T cd07962 1 FDEKRVEGG--RNFCNKLWNAARFVLMNLED-----DD--EPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAA 71 (135)
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHcccc-----cC--ccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 566666654 67888999998865332111 11 1100001224567899999999999999999999999999
Q ss_pred HHHHHHHH--HHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHc
Q 006917 476 RIGMSISS--EGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQL 538 (625)
Q Consensus 476 ~~i~~l~~--~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L 538 (625)
..+++++. .+|+|++..+||.+. .+..++..+++++.++++.++++|+||||++|+++|++|
T Consensus 72 ~~i~~~~~~~~~N~Yi~~~~pW~~~-~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 72 TALYEFFWNDFCDWYLELVKPRLYG-EDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHHHHHHhHHHHHHhhHHHcC-CChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 99999997 799999999999884 344467778999999999999999999999999999875
No 78
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.53 E-value=3.5e-13 Score=128.68 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=105.8
Q ss_pred cCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 006917 396 FTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGL 475 (625)
Q Consensus 396 fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~ 475 (625)
|+.+.+.+. .+++++++|+++.+...+.. ++..............|+|+++.++.+++.+.++|++|+++.|+
T Consensus 1 i~~~~~~~~--~~~~~Kl~N~~rf~~~~~~~-----~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~ 73 (180)
T cd07960 1 ISDEILKQV--AEAYRKIRNTFRFLLGNLND-----FDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVY 73 (180)
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHcccC-----CCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 355666654 67999999999887654332 11110000012345689999999999999999999999999999
Q ss_pred HHHHHHHH--HHhHHHHhccccccc--cCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 476 RIGMSISS--EGNAYLQESQFWKLY--NEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 476 ~~i~~l~~--~~N~y~~~~~pw~l~--k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
..+++|+. .+|.|++..+||.+. +++..+ ..+..++..+++.++++|+||||+++++||++||.
T Consensus 74 ~~i~~f~~~~l~n~Yi~~~k~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~ 141 (180)
T cd07960 74 QALNNFCTVDLSAFYLDIIKDRLYCDAKDSLER-RSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPG 141 (180)
T ss_pred HHHHHHHHHHHHHHHHHhcccceecCCCCCHHH-HHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccc
Confidence 99999995 789999999999874 223322 45667888899999999999999999999999985
No 79
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=2.2e-12 Score=133.71 Aligned_cols=340 Identities=14% Similarity=0.120 Sum_probs=216.8
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHH--------------------
Q 006917 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKA-------------------- 83 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a-------------------- 83 (625)
+++++|..+.|+.+-+.|+||+|+++ .+-.++...+..|++|..+...-|.|..+-..|
T Consensus 109 ~k~iVVefSSPNIAK~FHvGhLRsTi-iG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL 187 (567)
T KOG1195|consen 109 GKKIVVEFSSPNIAKPFHVGHLRSTI-IGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHL 187 (567)
T ss_pred CceEEEEecCCCcccccccchhhhhh-hhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHH
Confidence 57899999999999999999999865 499999999999999987665555555443332
Q ss_pred -----------HHc-C--------------------CCHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHH
Q 006917 84 -----------MEE-N--------------------CTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIF 131 (625)
Q Consensus 84 -----------~~~-g--------------------~~~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~ 131 (625)
++. . +.++.|-+--.....+.+++|||.||.|.-. +..+.+..+...
T Consensus 188 ~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y~gE-Sqv~~e~~~~~~ 266 (567)
T KOG1195|consen 188 FDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEYSGE-SQVSNEKMQEAL 266 (567)
T ss_pred HHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeeccch-HHHHHHHHHHHH
Confidence 110 0 0012233333455667888999999988432 336778888888
Q ss_pred HHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEecc
Q 006917 132 KKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTD 211 (625)
Q Consensus 132 ~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~ 211 (625)
..+.++|++....+...++.+.-. ...|.-++ .
T Consensus 267 d~~rs~~l~~e~dG~~vidL~~~~-------------------------------------------~~~~~~~V-~--- 299 (567)
T KOG1195|consen 267 DLLRSANLTEEIDGTIVIDLSKID-------------------------------------------KKAGKAVV-Q--- 299 (567)
T ss_pred HHHHhcCCcccCCCcEEEEecccC-------------------------------------------cccceEEE-E---
Confidence 888888866544433322221000 00000000 0
Q ss_pred ceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHh
Q 006917 212 HLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISI 291 (625)
Q Consensus 212 ~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~ 291 (625)
+.++.++ |+++
T Consensus 300 ------------------------------------------------------------ksdgttL---------YltR 310 (567)
T KOG1195|consen 300 ------------------------------------------------------------KSDGTTL---------YLTR 310 (567)
T ss_pred ------------------------------------------------------------cCCCcee---------hHHH
Confidence 0012222 2221
Q ss_pred ccCC-ChhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhh
Q 006917 292 TSCY-TPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDV 370 (625)
Q Consensus 292 ~~~~-~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~ 370 (625)
-.+- -+..++| .. .++|+++...+--+.+.++ -++..+|..|.-+-.++..|.+ +-||+.+|+++...|+
T Consensus 311 diaaal~Rl~~y---~f-dr~iYVvd~~Q~~hf~~lf-~ilk~mg~~~a~~~qHV~~G~v----~GmsTRkG~~~fl~di 381 (567)
T KOG1195|consen 311 DIAAALDRLEKY---SF-DRLIYVVDSQQKDHFCQLF-EILKKMGFDWAKKLQHVNFGRV----QGMSTRKGKVVFLDDI 381 (567)
T ss_pred HHHHHHHHHHhc---Cc-ceEEEEechHHHHHHHHHH-HHHHHhCchhhhhcceeccccc----ccccccCCceeeHHHH
Confidence 1000 0111111 11 2457887665543334444 4577788877555555555554 5799999999988888
Q ss_pred hhc---------------------------CCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 006917 371 KDT---------------------------NIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSF 423 (625)
Q Consensus 371 l~~---------------------------~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~ 423 (625)
+++ ..|.-++..-.+. +.-.++..|+|+.+-. +|++...++++.++|+.++
T Consensus 382 l~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k-~rr~s~yeF~w~~~~~-~~gdtg~yLQY~HsRL~Sl 459 (567)
T KOG1195|consen 382 LEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFK-GRRISNYEFSWNRVLS-FEGDTGPYLQYTHSRLRSL 459 (567)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHH-HHhcccceEEhhhhhe-ecCCchHHHHHHHHHHHHH
Confidence 762 2567777777776 4445899999999876 7889999999999999999
Q ss_pred hhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhc
Q 006917 424 IAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQES 492 (625)
Q Consensus 424 ~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~ 492 (625)
.++..+-..+...+.......++.-..|+..|..+++.+..+++.++++..+.+++.++..++..+...
T Consensus 460 erk~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~s~~yk~l 528 (567)
T KOG1195|consen 460 ERKFSDVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAVSSAYKIL 528 (567)
T ss_pred HHhccccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHhhe
Confidence 988321100100010001122233456889999999999999999999999999999999998888664
No 80
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.48 E-value=2.9e-13 Score=119.49 Aligned_cols=111 Identities=20% Similarity=0.298 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHH
Q 006917 411 NNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQ 490 (625)
Q Consensus 411 ~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~ 490 (625)
....|+++|+..++.+ .+++.+|..........|+++++.+..+.+++.++|++|++++|+..++++++.+|+|++
T Consensus 7 ~~~~n~l~R~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~ 82 (117)
T cd07958 7 EGAYRFLNRVWRLVTE----LAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKYKK 82 (117)
T ss_pred HHHHHHHHHHHHHHHH----HHhhccccccccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhc
Confidence 3456677777777665 334444321001234568999999999999999999999999999999999999999998
Q ss_pred hccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHc
Q 006917 491 ESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQL 538 (625)
Q Consensus 491 ~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L 538 (625)
..+| +++++.++++.++++|+||||++|+++|++|
T Consensus 83 ~~~p-------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 83 KDAQ-------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred cccc-------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 6554 4578889999999999999999999999875
No 81
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.47 E-value=6.3e-12 Score=136.42 Aligned_cols=93 Identities=24% Similarity=0.218 Sum_probs=67.8
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006917 29 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWF 108 (625)
Q Consensus 29 i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 108 (625)
+|--.|.|||.+||||+|++. ....+|| ...|.-++.+--||. ......+.+.+.++|++|
T Consensus 3 ~~RfAPsPtG~lHiG~~rtal-~n~l~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~i~~~L~wl 63 (470)
T TIGR00464 3 RTRFAPSPTGYLHIGGARTAL-FNYLFAK--HTGGEFILRIEDTDL----------------ERNIEEAEEAILEGLKWL 63 (470)
T ss_pred eEeeCCCCCCcccHHHHHHHH-HHHHHHH--HcCCEEEEEeCcCCC----------------ccCChHHHHHHHHHHHHC
Confidence 566778999999999999975 4888998 455665666555543 223445677899999999
Q ss_pred Ccccc-cccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 109 NISFD-EFGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 109 gi~~D-~~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
|+.+| -.++.+ ++...-+++..+|.++|.+|.
T Consensus 64 Gl~~de~~~~QS--~r~~~y~~~~~~L~~~g~aY~ 96 (470)
T TIGR00464 64 GISWDEGPYYQS--QRLDIYKKYAKELLEEGLAYR 96 (470)
T ss_pred CCCCCCCeeehh--CCHHHHHHHHHHHHHcCCEEe
Confidence 99999 333333 344555677788999999995
No 82
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.47 E-value=2.2e-12 Score=137.29 Aligned_cols=94 Identities=23% Similarity=0.253 Sum_probs=71.5
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
+++--.|.|||.+||||+|++. ....+|| +..|.-++.+--||. ....+.+.+.++++|++
T Consensus 3 vr~RFAPSPTG~lHiG~artAL-~n~l~Ar--~~gG~fiLRIEDTD~----------------~Rs~~~~~~~I~e~L~w 63 (445)
T PRK12558 3 VITRFAPSPTGYLHVGNARTAL-LNWLYAR--KHGGKFILRIDDTDL----------------ERSKQEYADAIAEDLKW 63 (445)
T ss_pred eeEEeCCCCCCcccHHHHHHHH-HHHHHHH--HhCCEEEEEeccCCc----------------ccchHHHHHHHHHHHHH
Confidence 4566778999999999999964 4888888 344555555544442 23446777889999999
Q ss_pred cCcccccccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
|||.+|.+++.+ +....++++.++|.++|++|.
T Consensus 64 LGI~~De~y~QS--er~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 64 LGINWDRTFRQS--DRFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred cCCCCCccccHH--HHHHHHHHHHHHHHHCCCEEE
Confidence 999999776554 334688999999999999985
No 83
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.45 E-value=7.3e-12 Score=134.88 Aligned_cols=286 Identities=14% Similarity=0.111 Sum_probs=160.9
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006917 27 ILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYN 106 (625)
Q Consensus 27 ~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 106 (625)
-++|--+|.|||.||||||+++++ ...+|| ...|.-++.+--||- ..-...+.+.+.++++
T Consensus 11 ~v~tRFAPsPtG~LHiGharaAll-n~l~Ar--~~gG~~iLRiEDTDp----------------~R~~~e~~~~I~~dL~ 71 (523)
T PLN03233 11 QIVTRFPPEPSGYLHIGHAKAALL-NDYYAR--RYKGRLILRFDDTNP----------------SKEKAEFEESIIEDLG 71 (523)
T ss_pred eEEEeeCCCCCCcccHHHHHHHHH-HHHHHH--HhCCEEEEEECCCCC----------------CccchHHHHHHHHHHH
Confidence 478999999999999999998654 899998 445666666544443 3344566778999999
Q ss_pred hcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccCC
Q 006917 107 WFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGK 186 (625)
Q Consensus 107 ~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~ 186 (625)
+||+.+|..+.++ .+.....+...+|.++|.+|. .+|+..+-- ..+.-...||
T Consensus 72 WLGl~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~-----C~cs~eel~-~~r~~~~~~~------------------- 124 (523)
T PLN03233 72 KIEIKPDSVSFTS--DYFEPIRCYAIILIEEGLAYM-----DDTPQEEMK-KERADRAESK------------------- 124 (523)
T ss_pred HhCCCCCCCcccc--ccHHHHHHHHHHHHHcCCeEe-----cCCCHHHHH-HHHhhhccCc-------------------
Confidence 9999999655444 566788888999999999995 233321100 0000000000
Q ss_pred CCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCC--C--CCCChhHHHHHHHHHhcCCCCccccccc
Q 006917 187 LLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSV--S--GSWSQNAIQGTYAWLKDGLKPRCITRDL 262 (625)
Q Consensus 187 ~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~--~--~~~~~~~~~~~~~~l~~~l~d~~IsR~~ 262 (625)
| | +++ ..+.+ +.++++.. . ..+.-+++..+ ..-...+.|+.+-|..
T Consensus 125 -----------~-R---------------~~s-~ee~l-~~~~~m~~G~~~~~~~~lR~K~d~-~~~n~~~~D~Vi~R~d 174 (523)
T PLN03233 125 -----------H-R---------------NQS-PEEAL-EMFKEMCSGKEEGGAWCLRAKIDM-QSDNGTLRDPVLFRQN 174 (523)
T ss_pred -----------c-c---------------cCC-HHHHH-HHHHHHhcccccCCCeEEEEeCcc-cCCCCCCcCCEEEEEc
Confidence 0 0 000 00011 11111100 0 00000000000 0011235566666642
Q ss_pred CCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEE-eecccchhHhHHHHHhhcCCCCccCc
Q 006917 263 KWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFM-GKDNAPFHTVMFPSTLLGTEENWTLM 341 (625)
Q Consensus 263 ~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~-GkD~~~fH~~~~pa~l~a~~~~~~~~ 341 (625)
|.|-|-- ++...+|.- |-.+. ..+ +....+.|++ |.|++.- +...-.++.++|. +.|
T Consensus 175 --~~~h~~~---Gd~~~~~Pt----Y~fA~--~VD--------D~l~gITHviRg~E~~~~-t~~q~~l~~aLg~--~~P 232 (523)
T PLN03233 175 --TTPHHRS---GTAYKAYPT----YDLAC--PIV--------DSIEGVTHALRTTEYDDR-DAQFFWIQKALGL--RRP 232 (523)
T ss_pred --CCccccc---CCcccceec----cCCce--eee--------ccccCCCeEEechhhhcC-CHHHHHHHHHhCC--CCC
Confidence 1222211 111111110 10000 000 1223457877 8887632 1122234556664 456
Q ss_pred ceEEeeeeeecCCccccccC------Cccc---------CchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHh
Q 006917 342 KTISVTEYLNYEAGKFSKSK------GVGV---------FGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLN 406 (625)
Q Consensus 342 ~~i~~hg~l~~~G~KMSKS~------GN~I---------~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n 406 (625)
.. ...+.+++.|.||||++ .+.| ++..+..++|.+++||-|++..+.-..|..++++.+.. .|
T Consensus 233 ~~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~-~n 310 (523)
T PLN03233 233 RI-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWA-EN 310 (523)
T ss_pred ee-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHH-HH
Confidence 54 44678889999999997 3444 57788878999999999999988888999999999876 55
Q ss_pred HHHHHH
Q 006917 407 TELLNN 412 (625)
Q Consensus 407 ~~l~~~ 412 (625)
++.++.
T Consensus 311 R~~ld~ 316 (523)
T PLN03233 311 KKEIDK 316 (523)
T ss_pred HHHhcc
Confidence 555444
No 84
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.45 E-value=5.3e-13 Score=141.35 Aligned_cols=266 Identities=19% Similarity=0.195 Sum_probs=150.0
Q ss_pred CCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcc
Q 006917 32 ALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNIS 111 (625)
Q Consensus 32 ~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~ 111 (625)
-.|.|||.+||||+|++.+ ...+|| +..|.-++.+--||. ......+.+.+.++|++||+.
T Consensus 4 FAPSPTG~LHiG~artAL~-n~l~Ar--~~gG~fiLRiEDTD~----------------~R~~~e~~~~I~~~L~WlGl~ 64 (433)
T PRK12410 4 FAPSPTGDMHIGNLRAAIF-NYIVAK--QQNEDFLIRIEDTDK----------------ERNIEGKDKEILEILNLFGIS 64 (433)
T ss_pred cCCCCCCcccHHHHHHHHH-HHHHHH--HcCCEEEEEeCcCCC----------------CcCChHHHHHHHHHHHHcCCC
Confidence 4689999999999999754 899988 556777777766664 223445667889999999999
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccc-ccc---ccCCCCCccccCCCCCccccccCCC
Q 006917 112 FDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLAD-RLV---EGSCPTLGCNYDSARGDQCEKCGKL 187 (625)
Q Consensus 112 ~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~-~~v---~g~cp~~~c~~~~~~g~~ce~cg~~ 187 (625)
+|.-++.+ ++...-++..++|.++|.+|. .||+..+ +.. +.. .|.-| .|-..|. .
T Consensus 65 wDe~y~QS--eR~~~Y~~~a~~Li~~G~AY~-----C~cs~ee--l~~~r~~~~~~g~~~--------~Y~g~cr----~ 123 (433)
T PRK12410 65 WDKLVYQS--ENLKFHRQMAEKLLSEKKAFA-----CFCSEEE--LEAKKEKAKNEKKPY--------RYDGTCE----N 123 (433)
T ss_pred CCCCeehh--ccHHHHHHHHHHHHHcCCeee-----ecCCHHH--HHHHHHHHhhcCCCC--------CCCchhh----C
Confidence 99554444 445666778888999999995 4554432 111 000 01000 0111110 1
Q ss_pred CCCCccCCCccccCCCccEEEeccceeeecc----chHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccC
Q 006917 188 LNPTELKDPRCKVCQATPKIRDTDHLFLELP----LIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLK 263 (625)
Q Consensus 188 ~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~ 263 (625)
+++.+. ...|.+..+| |+++ .|.|. +.. .+ .+-...+.|+.|-|.-.
T Consensus 124 l~~~e~-----~~~g~~~~iR------~k~p~~~~~f~D~----v~G-------------~i-~~~~~~~~D~Vi~R~Dg 174 (433)
T PRK12410 124 LEDDEV-----LNCNKPFVVR------LKKPNHTMSFTDA----IKG-------------EV-SFEPDEIDSFVILRADK 174 (433)
T ss_pred CCHhHH-----HhcCCCeEEE------EEcCCCceeeeec----cce-------------eE-EeccccCCCeEEEcCCC
Confidence 111110 0012222221 1111 01111 000 00 00012345677766421
Q ss_pred CCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEE-eecccc---hhHhHHHHHhhcCCCCcc
Q 006917 264 WGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFM-GKDNAP---FHTVMFPSTLLGTEENWT 339 (625)
Q Consensus 264 WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~-GkD~~~---fH~~~~pa~l~a~~~~~~ 339 (625)
.|.. .+=|-.| +....+.||+ |.|++. -|.. +..++|. +
T Consensus 175 ----~PtY-----~fA~vVD----------------------D~~mgIThViRG~d~l~~tp~Qi~----Ly~aLg~--~ 217 (433)
T PRK12410 175 ----TPTY-----NFACAVD----------------------DMLYDISLIIRGEDHVSNTPKQIL----IREALGY--N 217 (433)
T ss_pred ----Cccc-----cccchhc----------------------hhhcCCCEEEechhhhhCcHHHHH----HHHHcCC--C
Confidence 1110 0001111 1234568888 999873 3443 3445564 4
Q ss_pred CcceEEeeeee-ecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHH
Q 006917 340 LMKTISVTEYL-NYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAK 404 (625)
Q Consensus 340 ~~~~i~~hg~l-~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~ 404 (625)
+|..+.++..+ +.+|+||||+.|. +++.++.+.+|.+++++-|++..+....+--|+.+.+.+.
T Consensus 218 ~pp~f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG~~~~~e~~~~~eli~~ 282 (433)
T PRK12410 218 KEITYAHLPIILNEEGKKMSKRDNA-SSVKWLLEQGFLPSAIANYLILLGNKTPKEIFTLEEAIEW 282 (433)
T ss_pred CCCeEEEeeeeeCCCCCeeecccCh-hhHHHHHHCCCCHHHHHHHHHHhCCCCcccccCHHHHHHh
Confidence 55567777765 5899999999985 6888888889999999999998653323444666666554
No 85
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.41 E-value=5.8e-12 Score=122.68 Aligned_cols=89 Identities=22% Similarity=0.315 Sum_probs=64.9
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006917 29 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWF 108 (625)
Q Consensus 29 i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 108 (625)
++--.|.|||.+||||+++++ ....+|| +..|.-++.+--||. ......+.+.+.+++++|
T Consensus 3 ~~RFAPsPtG~lHlG~~r~al-~n~l~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~I~~dL~wl 63 (230)
T cd00418 3 VTRFAPSPTGYLHIGHARTAL-FNFAFAR--KYGGKFILRIEDTDP----------------ERSRPEYVESILEDLKWL 63 (230)
T ss_pred eEEeCCCCCCcccHHHHHHHH-HHHHHHH--HcCCeEEEEeCcCCC----------------CCCChHHHHHHHHHHHHc
Confidence 566788999999999999865 4899998 455666666655554 223345667889999999
Q ss_pred Cccccc-ccCCCChhHHHHHHHHHHHHHHCC
Q 006917 109 NISFDE-FGRTSTPQQTEICQAIFKKLLENN 138 (625)
Q Consensus 109 gi~~D~-~~~t~~~~~~~~v~~~~~~L~~~G 138 (625)
|+.+|. .+..+ ++...-++..++|.++|
T Consensus 64 Gl~wd~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 64 GLDWDEGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred CCCCCCCeeehh--cCHHHHHHHHHHHHHcC
Confidence 999995 32332 45566677777888888
No 86
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.40 E-value=2.9e-12 Score=139.07 Aligned_cols=94 Identities=22% Similarity=0.254 Sum_probs=71.4
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
++|--.|.|||.+||||+|++.+ ...+|| +..|.-++.+--||. ......+.+.+.++|++
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~-n~l~Ar--~~~G~fiLRieDtD~----------------~R~~~~~~~~i~~~L~w 65 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALF-NWLFAR--HHGGKFILRIEDTDQ----------------ERSTEEAEEAILEGLKW 65 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHH-HHHHHH--HcCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHH
Confidence 56777889999999999999754 889888 456766666655554 23455667789999999
Q ss_pred cCcccccc--------cCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDEF--------GRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~~--------~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
||+.+|.- ++.+ ++...-++..++|.++|++|.
T Consensus 66 lGl~~De~p~~~~~gpy~QS--~r~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 66 LGLDWDEGPDGGPYGPYRQS--ERLDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred CCCCCCCCCccCCCCceehh--cCHHHHHHHHHHHHHcCCeee
Confidence 99999932 3333 455677788888999999995
No 87
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.40 E-value=9.3e-12 Score=119.19 Aligned_cols=139 Identities=19% Similarity=0.268 Sum_probs=103.0
Q ss_pred cCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 006917 396 FTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGL 475 (625)
Q Consensus 396 fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~ 475 (625)
||++.+... .++++++++|+++.+++..... .++..............|+|+++.++.+++.+.++|++|+|+.|+
T Consensus 1 ~s~~~v~~~-~~~f~~KlwN~~rf~l~~~~~~---~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~ 76 (183)
T cd07961 1 FSEKGVREV-VRKVLLPLWNAYRFFVTYANLD---GFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAV 76 (183)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh---CCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 677777664 3569999999998886532210 111110000011245689999999999999999999999999999
Q ss_pred HHHHHHHHH-HhHHHHhccc--cccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 476 RIGMSISSE-GNAYLQESQF--WKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 476 ~~i~~l~~~-~N~y~~~~~p--w~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
..+++++.. ++.|++..++ |... ++ ........++..+++.+..+|+|||||+||+||++++.
T Consensus 77 ~~l~~f~~~~~~~Y~e~~K~~~~~~~-~~-~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~ 142 (183)
T cd07961 77 RALLEFIDELTNWYIRRNRKRFWGEE-GD-DDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRR 142 (183)
T ss_pred HHHHHHHHHhhhhHhhhchHHhcCCC-Cc-hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 999999975 4889987654 4322 12 23345677888999999999999999999999999974
No 88
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.40 E-value=1.4e-11 Score=120.01 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=71.2
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
+++--.|.|||.+||||++++. ....+|| +..|.-++.+--||. ......+.+.+.+++++
T Consensus 2 v~~RFAPsPtG~lHlG~~~~al-~~~l~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~I~~dL~w 62 (238)
T cd00807 2 VVTRFPPEPNGYLHIGHAKAIL-LNFGYAK--KYGGRCNLRFDDTNP----------------EKEEEEYVDSIKEDVKW 62 (238)
T ss_pred ceEecCCCCCCcccHHHHHHHH-HHHHHHH--HhCCEEEEEecCCCC----------------cccchHHHHHHHHHHHH
Confidence 4677789999999999999865 4899988 455665655544443 23445667789999999
Q ss_pred cCcccccccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
||+.+|..+..+ ++.+.-++...+|.++|.+|.
T Consensus 63 lGl~wD~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 63 LGIKPYKVTYAS--DYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred cCCCCCCceecc--cCHHHHHHHHHHHHHcCCeec
Confidence 999999443333 566777888889999999996
No 89
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=6.3e-12 Score=134.64 Aligned_cols=94 Identities=21% Similarity=0.229 Sum_probs=74.8
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
++|--+|.|||.|||||||++++ ...+|| ...|.-++.+--||- +.-...+.+.+.++|++
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~-N~~~Ar--~~~G~fiLRiEDTD~----------------~R~~~e~~~~I~~~L~W 70 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALL-NYLYAR--KYGGKFILRIEDTDP----------------ERETPEAEDAILEDLEW 70 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHH-HHHHHH--HhCCEEEEEecCCCC----------------CCCCHHHHHHHHHHHHh
Confidence 78889999999999999998754 899998 566777777766664 23334566789999999
Q ss_pred cCccccc-ccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDE-FGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~-~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
||+.+|. .++.+ ++...-.+...+|.++|.+|.
T Consensus 71 LGl~wde~~~~QS--~r~~~Y~~~~~~Li~~G~AY~ 104 (472)
T COG0008 71 LGLDWDEGPYYQS--ERFDIYYEYAEKLIEKGKAYV 104 (472)
T ss_pred cCCCCCCceeehh--hhHHHHHHHHHHHHHCCCeEE
Confidence 9999996 44444 566777888888999999994
No 90
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.36 E-value=1.3e-11 Score=132.86 Aligned_cols=94 Identities=21% Similarity=0.245 Sum_probs=69.9
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
++|--.|.|||.+||||+|++. ....+|| +..|.-++.+--||- ......+.+.+.++|++
T Consensus 5 vrtRFAPSPTG~lHiG~artAL-~n~l~Ar--~~gG~fiLRIEDTD~----------------~R~~~~~~~~i~~~L~W 65 (513)
T PRK14895 5 VITRFAPSPTGFLHIGSARTAL-FNYLFAR--HHNGKFLLRIEDTDK----------------ERSTKEAVEAIFSGLKW 65 (513)
T ss_pred eeEeeCCCCCCCccHHHHHHHH-HHHHHHH--HcCCEEEEEECCCCc----------------cccChHHHHHHHHHHHH
Confidence 4567778999999999999975 4899988 455666666655543 23445667788999999
Q ss_pred cCcccc-cccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFD-EFGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D-~~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
||+.+| -.++.+ ++...-++..++|.++|.+|.
T Consensus 66 LGl~wDe~py~QS--eR~~~Y~~~a~~Li~~G~AY~ 99 (513)
T PRK14895 66 LGLDWNGEVIFQS--KRNNLYKEAALKLLQNGKAYY 99 (513)
T ss_pred cCCCCCCCceeEe--CcHHHHHHHHHHHHHcCCeEE
Confidence 999999 333333 344566777888999999995
No 91
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.36 E-value=4.8e-11 Score=130.09 Aligned_cols=96 Identities=18% Similarity=0.236 Sum_probs=75.3
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006917 26 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVY 105 (625)
Q Consensus 26 ~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 105 (625)
.-++|--+|.|||+||||||++++ ..+.+|| .|...++.-+||.+.+ .-...+.+.+.+++
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaal-ln~~~Ar-----~~~G~~iLRidDTDp~-------------R~~~e~~~~I~edL 152 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAI-LNQYFAK-----KYKGKLIIRFDDTDPR-------------RVKPEAYDMILEDL 152 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHH-HHHHHHH-----hcCCEEEEEeCcCCcc-------------cccHHHHHHHHHHH
Confidence 347899999999999999999865 4999997 3445555666665442 12234677899999
Q ss_pred hhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 106 NWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 106 ~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
++||+.+|..++++ .|.....++..+|.++|++|.
T Consensus 153 ~wLGi~~d~~~~qS--d~~~~y~~~a~~Li~~G~AY~ 187 (560)
T TIGR00463 153 DWLGVKGDEVVYQS--DRIEEYYDYCRKLIEMGKAYV 187 (560)
T ss_pred HHcCCCCCcccccc--ccHHHHHHHHHHHHHcCCcee
Confidence 99999999766555 688889999999999999995
No 92
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.35 E-value=4.5e-11 Score=129.24 Aligned_cols=290 Identities=13% Similarity=0.036 Sum_probs=154.1
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006917 27 ILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYN 106 (625)
Q Consensus 27 ~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 106 (625)
-++|--+|.|||.||||||+++++ ...+|| +..|.-++.+--||- ......+.+.+.++++
T Consensus 29 ~v~tRFaPsPtG~LHiG~ar~al~-n~~~Ar--~~~G~~iLRieDTd~----------------~r~~~e~~~~I~~dL~ 89 (554)
T PRK05347 29 RVHTRFPPEPNGYLHIGHAKSICL-NFGLAQ--DYGGKCNLRFDDTNP----------------EKEDQEYVDSIKEDVR 89 (554)
T ss_pred ceEEEeCCCCCCcccHHHHHHHHH-HHHHHH--HhCCEEEEEECCCCC----------------CcCChHHHHHHHHHHH
Confidence 377899999999999999998755 888998 345655555544442 2344566778999999
Q ss_pred hcCcccc-cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccC
Q 006917 107 WFNISFD-EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCG 185 (625)
Q Consensus 107 ~lgi~~D-~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg 185 (625)
+||+.+| ..+.++ .+.....+...+|.++|++|. .||+..+-- ..+... .+.|..|
T Consensus 90 wLGi~~d~~~~~qS--~r~~~~y~~a~~Li~~G~AY~-----c~cs~eei~-~~R~~~-----------~~~g~~~---- 146 (554)
T PRK05347 90 WLGFDWSGELRYAS--DYFDQLYEYAVELIKKGKAYV-----DDLSAEEIR-EYRGTL-----------TEPGKNS---- 146 (554)
T ss_pred HcCCCCCCCceeee--cCHHHHHHHHHHHHHcCCEee-----CCCCHHHHH-HHhhhh-----------hhcCCCC----
Confidence 9999996 333333 344445566678999999995 333321100 000000 0000000
Q ss_pred CCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHH--HHhCCCCCCCChhHHHHHHHH--HhcCCCCcccccc
Q 006917 186 KLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEY--INKMSVSGSWSQNAIQGTYAW--LKDGLKPRCITRD 261 (625)
Q Consensus 186 ~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~--l~~~l~d~~IsR~ 261 (625)
.| | +.++ .+.+..| ...... +..+.-++.. .++ -...++||.|-|.
T Consensus 147 -----------~~-R-~~s~---------------eenl~~~~~m~~G~~-~~g~~vlR~K-id~~~~n~~~rD~Vi~R~ 196 (554)
T PRK05347 147 -----------PY-R-DRSV---------------EENLDLFERMRAGEF-PEGSAVLRAK-IDMASPNINMRDPVLYRI 196 (554)
T ss_pred -----------Cc-c-CCCH---------------HHHHHHHHHHHCCCC-CCCcEEEEEE-eeccCCCCCCCCCEEEEe
Confidence 00 0 0000 1111111 111110 0000000000 000 0012456666653
Q ss_pred cCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEE-eecccchhHhHHHHHhhcCCCCccC
Q 006917 262 LKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFM-GKDNAPFHTVMFPSTLLGTEENWTL 340 (625)
Q Consensus 262 ~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~-GkD~~~fH~~~~pa~l~a~~~~~~~ 340 (625)
.. .|-|-.| +.-++|.-.| ++... + +....+.|++ |.|+.- |+...--++.++|.. ..
T Consensus 197 ~~--~~H~r~G-~k~~iyPtYd-----fA~~v---d--------D~l~gITHvlRg~E~~~-~t~~~~~i~~alg~~-~~ 255 (554)
T PRK05347 197 RH--AHHHRTG-DKWCIYPMYD-----FAHCI---S--------DAIEGITHSLCTLEFED-HRPLYDWVLDNLPIP-PH 255 (554)
T ss_pred cC--CCCCccC-CceeeecCcC-----cccee---e--------ccccCCceEEecccccc-ChHHHHHHHHHcCCC-CC
Confidence 21 1222211 1112221111 00000 0 0112346776 666653 222233456666642 12
Q ss_pred cceEEeeeeeecCCccccccCCc------cc---------CchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHH
Q 006917 341 MKTISVTEYLNYEAGKFSKSKGV------GV---------FGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKL 405 (625)
Q Consensus 341 ~~~i~~hg~l~~~G~KMSKS~GN------~I---------~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~ 405 (625)
| .++..|+|+++|.|||||++. .| ++..+..++|.+++||-|++..+.-..+..++++.|.. .
T Consensus 256 P-~~~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~-~ 333 (554)
T PRK05347 256 P-RQYEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLES-C 333 (554)
T ss_pred C-ceEEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHH-H
Confidence 3 455678899999999999964 12 67788888999999999999988777899999998876 4
Q ss_pred hHHHHH
Q 006917 406 NTELLN 411 (625)
Q Consensus 406 n~~l~~ 411 (625)
|++.++
T Consensus 334 nRk~ld 339 (554)
T PRK05347 334 IREDLN 339 (554)
T ss_pred HHHHhc
Confidence 554433
No 93
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.35 E-value=6.5e-12 Score=116.55 Aligned_cols=90 Identities=26% Similarity=0.402 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHH-HhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhc
Q 006917 448 TKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSI-SSE-GNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEP 525 (625)
Q Consensus 448 d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l-~~~-~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P 525 (625)
|+|+++.++.+.+.+.++|++|+|+.|+..+++| .+. +|+|++..+||...+.+..... +..++..+++.++++|+|
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll~P 79 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILLSP 79 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhccCC
Confidence 6899999999999999999999999999999997 444 5999999999988765443345 889999999999999999
Q ss_pred hhhHHHHHHHHHc
Q 006917 526 FMPSFSLEVLKQL 538 (625)
Q Consensus 526 ~~P~~ae~i~~~L 538 (625)
|||++||++|++|
T Consensus 80 ~~P~~aEeiw~~l 92 (153)
T PF08264_consen 80 FMPFIAEEIWQRL 92 (153)
T ss_dssp TSHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHh
Confidence 9999999999888
No 94
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.31 E-value=5e-11 Score=128.67 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=67.9
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006917 29 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWF 108 (625)
Q Consensus 29 i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 108 (625)
+|--+|.|||.||||||+++++ ...+|| +..|.-++.+--||- ..-...+.+.+.+++++|
T Consensus 2 ~tRFaPsPtG~LHiG~ar~al~-n~~~A~--~~~G~~iLRieDTd~----------------~r~~~e~~~~I~~dL~wL 62 (522)
T TIGR00440 2 HTRFPPEPNGYLHIGHAKSICL-NFGYAK--YYNGTCNLRFDDTNP----------------VKEDPEYVESIKRDVEWL 62 (522)
T ss_pred eEecCCCCCCcccHHHHHHHHH-HHHHHH--HhCCEEEEEEcCCCc----------------ccCChHHHHHHHHHHHHc
Confidence 5677899999999999998754 899998 445665555544443 233446677899999999
Q ss_pred Ccccc-cccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 109 NISFD-EFGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 109 gi~~D-~~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
|+.+| ..+.++ .|.....+...+|.++|.+|.
T Consensus 63 G~~~d~~~~~qS--~~~~~~~~~a~~Li~~G~AY~ 95 (522)
T TIGR00440 63 GFKWEGKIRYSS--DYFDELYRYAEELIKKGLAYV 95 (522)
T ss_pred CCCCCCCceEcc--ccHHHHHHHHHHHHHcCCEEe
Confidence 99996 322333 444555667789999999995
No 95
>PLN02627 glutamyl-tRNA synthetase
Probab=99.31 E-value=3.9e-11 Score=129.38 Aligned_cols=94 Identities=22% Similarity=0.229 Sum_probs=71.3
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
+++--.|.|||.+||||+|++. ....+|| +..|.-++.+--||- ......+.+.+.++|++
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL-~n~l~Ar--~~gG~fiLRIEDTD~----------------~R~~~e~~~~I~~~L~W 106 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTAL-FNYLFAR--SKGGKFVLRIEDTDL----------------ARSTKESEEAVLRDLKW 106 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHH-HHHHHHH--HhCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHH
Confidence 6677788999999999999975 4999999 556776777665654 23445666788999999
Q ss_pred cCcccccc---------cCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDEF---------GRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~~---------~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
||+.+|.- ++.+ ++...-.++.++|.++|.+|.
T Consensus 107 LGl~wDegp~~gg~~gpy~QS--eR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 107 LGLDWDEGPDVGGEYGPYRQS--ERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred cCCCCCcCcccCCCCCCeeee--ccHHHHHHHHHHHHHcCCeee
Confidence 99999941 2222 445666778888999999995
No 96
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.30 E-value=3e-10 Score=123.77 Aligned_cols=94 Identities=12% Similarity=0.144 Sum_probs=72.7
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006917 27 ILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYN 106 (625)
Q Consensus 27 ~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 106 (625)
-++|--+|.|||.||||||++++ ....+|| ...|.-++.+--||- ......+.+.+.++++
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAl-lN~l~Ar--~~gG~~iLRiEDTDp----------------~R~~~e~~d~IleDL~ 112 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAAL-INSMLAD--KYKGKLVFRFDDTNP----------------SKEKEHFEQAILDDLA 112 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHH-HHHHHHH--HhCCEEEEEEcCCCC----------------cccCHHHHHHHHHHHH
Confidence 37899999999999999999865 4899998 445655555544442 3345567788999999
Q ss_pred hcCccccc-ccCCCChhHHHHHHHHHHHHHHCCCEE
Q 006917 107 WFNISFDE-FGRTSTPQQTEICQAIFKKLLENNWLS 141 (625)
Q Consensus 107 ~lgi~~D~-~~~t~~~~~~~~v~~~~~~L~~~G~iy 141 (625)
+||+.+|. .+.++ .+.....++..+|.++|++|
T Consensus 113 WLGl~wDe~~~~QS--dr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 113 TLGVSWDVGPTYSS--DYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred HCCCCCCCceeecc--ccHHHHHHHHHHHHHcCCEE
Confidence 99999994 33333 56778888899999999999
No 97
>PLN02907 glutamate-tRNA ligase
Probab=99.28 E-value=2e-10 Score=129.96 Aligned_cols=285 Identities=14% Similarity=0.131 Sum_probs=161.0
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006917 26 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVY 105 (625)
Q Consensus 26 ~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 105 (625)
.-++|--+|.|||.||||||+++.+ ...+|| +..|.-++.+--||- ..-...+.+.+.+++
T Consensus 212 ~~v~tRFaPsPtG~LHiG~ar~al~-n~~~Ar--~~~G~~iLR~eDTdp----------------~r~~~e~~~~I~~dl 272 (722)
T PLN02907 212 GKVCTRFPPEPSGYLHIGHAKAALL-NQYFAR--RYKGKLIVRFDDTNP----------------SKESDEFVENILKDI 272 (722)
T ss_pred CceEEeeCCCCCCcccHHHHHHHHH-HHHHHH--HhCCEEEEEecCCCC----------------CcCChHHHHHHHHHH
Confidence 3478999999999999999998654 999998 455665666544443 223446677899999
Q ss_pred hhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccC
Q 006917 106 NWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCG 185 (625)
Q Consensus 106 ~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg 185 (625)
++||+.+|..+.++ .+.....+...+|.++|.+|.. .|+.. -+.+. .+ .|
T Consensus 273 ~wLG~~~d~~~~qS--~r~~~y~~~a~~Li~~G~aY~~-----~~~~~--~~~~~--~~------------~~------- 322 (722)
T PLN02907 273 ETLGIKYDAVTYTS--DYFPQLMEMAEKLIKEGKAYVD-----DTPRE--QMRKE--RM------------DG------- 322 (722)
T ss_pred HHcCCCCCCccccc--ccHHHHHHHHHHHHHcCCeeec-----CCCHH--HHHHH--Hh------------cC-------
Confidence 99999999665554 5667888899999999999951 12110 00000 00 00
Q ss_pred CCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCC------CCCCCChhHHHHHHHHHhcCCCCcccc
Q 006917 186 KLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMS------VSGSWSQNAIQGTYAWLKDGLKPRCIT 259 (625)
Q Consensus 186 ~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~l~~~l~d~~Is 259 (625)
.+..| | +.++ .+.+ +..+++. ..+.++-.. . ...-...+.|+.+-
T Consensus 323 --------~~~~~-R-~~~~---------------ee~~-~~~~~m~~g~~~~~~~~lR~k~--d-~~~~n~~~~D~v~~ 373 (722)
T PLN02907 323 --------IESKC-R-NNSV---------------EENL-RLWKEMIAGSERGLQCCVRGKL--D-MQDPNKSLRDPVYY 373 (722)
T ss_pred --------CCCCc-c-CCCH---------------HHHH-HHHHHHhcccccCCCeEEEEEc--c-cCCCCCCcccCEEE
Confidence 00011 1 0011 0111 1111110 000011000 0 00011225577666
Q ss_pred cccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEE-eecccchhHhHHHHHhhcCCCCc
Q 006917 260 RDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFM-GKDNAPFHTVMFPSTLLGTEENW 338 (625)
Q Consensus 260 R~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~-GkD~~~fH~~~~pa~l~a~~~~~ 338 (625)
|.. |.+-|-. ++...+|.- |-.+. .-+ +....+.|++ |.|++.- +...-.++.++|.
T Consensus 374 R~~--~~~h~~~---gd~~~~~Pt----Y~fa~--~vd--------D~~~gIThvlRg~e~~~~-t~~q~~l~~~lg~-- 431 (722)
T PLN02907 374 RCN--PTPHHRI---GSKYKVYPT----YDFAC--PFV--------DALEGVTHALRSSEYHDR-NAQYYRILEDMGL-- 431 (722)
T ss_pred Eec--CCccccc---CCccceeec----cCCce--EEE--------cccCCCceEeecHhhhhC-hHHHHHHHHHcCC--
Confidence 643 2222211 111111110 10000 000 1223357777 7777531 1112234556665
Q ss_pred cCcceEEeeeeeecCCccccccC-------Ccc--------cCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHH
Q 006917 339 TLMKTISVTEYLNYEAGKFSKSK-------GVG--------VFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQA 403 (625)
Q Consensus 339 ~~~~~i~~hg~l~~~G~KMSKS~-------GN~--------I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~ 403 (625)
+.| .+...|+++++|.|||||+ |-+ -++..+..++|.+++||=|+...+.-..+..|+++.+..
T Consensus 432 ~~p-~~~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~ 510 (722)
T PLN02907 432 RKV-HIWEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWT 510 (722)
T ss_pred CCC-eeEEEEEEcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHH
Confidence 345 5667788999999999999 422 245677777899999999999988888999999999876
Q ss_pred HHhHHHHHH
Q 006917 404 KLNTELLNN 412 (625)
Q Consensus 404 ~~n~~l~~~ 412 (625)
+|++.++.
T Consensus 511 -~nr~~id~ 518 (722)
T PLN02907 511 -INKKIIDP 518 (722)
T ss_pred -HHHHHhcc
Confidence 56655443
No 98
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=99.28 E-value=6.8e-11 Score=127.61 Aligned_cols=94 Identities=16% Similarity=0.052 Sum_probs=71.1
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
++|--+|.|||.||||||+++++ ...+|| +..|.-++.+--|| |......+.+.+.+++++
T Consensus 52 v~tRFaPsPtG~LHiGharaall-n~~~Ar--~~gG~~iLRiEDTD----------------p~r~~~e~~~~I~~dL~w 112 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNL-NFGSAR--AHGGKCYLRYDDTN----------------PETEEQVYIDAIMEMVKW 112 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHH-HHHHHH--HhCCEEEEEECCCC----------------ccccChHHHHHHHHHHHH
Confidence 67888999999999999998654 899998 34565555554444 233455677889999999
Q ss_pred cCcccccccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
||+.+|..+.++ .|.+...+...+|.++|.+|.
T Consensus 113 LGi~~D~~~~qS--~y~~~~ye~A~~Li~~G~AY~ 145 (574)
T PTZ00437 113 MGWKPDWVTFSS--DYFDQLHEFAVQLIKDGKAYV 145 (574)
T ss_pred cCCCCCCCCcCc--hhHHHHHHHHHHHHHcCCEEE
Confidence 999999654433 555556677789999999995
No 99
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.26 E-value=1.7e-10 Score=130.16 Aligned_cols=292 Identities=13% Similarity=0.062 Sum_probs=156.7
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006917 27 ILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYN 106 (625)
Q Consensus 27 ~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 106 (625)
-++|--+|.|||.+|||||+++++ ...+|| +..|.-++.+--||- ..-...+.+.+.++++
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~all-n~~~A~--~~~G~~~LR~eDTd~----------------~r~~~e~~~~I~~dl~ 91 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILL-NFGIAR--DYGGRCHLRMDDTNP----------------ETEDTEYVEAIKDDVR 91 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHH-HHHHHH--HhCCEEEEEeCCCCC----------------CcCChHHHHHHHHHHH
Confidence 378899999999999999998655 888888 445655555433332 2344466778999999
Q ss_pred hcCccccc-ccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccC
Q 006917 107 WFNISFDE-FGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCG 185 (625)
Q Consensus 107 ~lgi~~D~-~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg 185 (625)
+||+.+|. .+.++ .|.....+...+|.++|++|. .+|+..+- -..+.- + ...|.
T Consensus 92 wLG~~wd~~~~~qS--~~~~~y~~~a~~Li~~G~aY~-----c~cs~eei-~~~r~~----~-------~~~g~------ 146 (771)
T PRK14703 92 WLGFDWGEHLYYAS--DYFERMYAYAEQLIKMGLAYV-----DSVSEEEI-RELRGT----V-------TEPGT------ 146 (771)
T ss_pred HcCCCCCCCceEee--cCHHHHHHHHHHHHHcCCccc-----CcCCHHHH-HHHHhh----h-------hhcCC------
Confidence 99999983 23333 567777888889999999995 23332110 000000 0 00000
Q ss_pred CCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCCh--hH-HHH-HHHHHhcCCCCcccccc
Q 006917 186 KLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQ--NA-IQG-TYAWLKDGLKPRCITRD 261 (625)
Q Consensus 186 ~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~--~~-~~~-~~~~l~~~l~d~~IsR~ 261 (625)
.+.| | +++. +.-++.++.+.. ..+.. .+ +-. -.+.-...++||.+-|.
T Consensus 147 ---------~~~~-R---------------~~s~--ee~l~~~~~m~~-G~~~~g~~vlR~Kid~~~~n~~~rD~v~~R~ 198 (771)
T PRK14703 147 ---------PSPY-R---------------DRSV--EENLDLFRRMRA-GEFPDGAHVLRAKIDMSSPNMKLRDPLLYRI 198 (771)
T ss_pred ---------CCCC-C---------------CCCH--HHHHHHHHHHhC-CCCcCCCeEEEEEeeccCCcccCCCCEEEEE
Confidence 0001 0 0100 011111111100 00000 00 000 00000123556666663
Q ss_pred cCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEE-eecccchhHhHHHHHhhcCCCCccC
Q 006917 262 LKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFM-GKDNAPFHTVMFPSTLLGTEENWTL 340 (625)
Q Consensus 262 ~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~-GkD~~~fH~~~~pa~l~a~~~~~~~ 340 (625)
. +.|.|-.| +...+|.-.| ++... + +....+.|++ |.|+..- +...--++.++|. |++
T Consensus 199 ~--~~~H~~~G-d~~~i~PtYd-----fa~~v---d--------D~l~gITHvlRg~E~~~~-~~~~~~l~~~l~~-~~~ 257 (771)
T PRK14703 199 R--HAHHYRTG-DEWCIYPMYD-----FAHPL---E--------DAIEGVTHSICTLEFENN-RAIYDWVLDHLGP-WPP 257 (771)
T ss_pred c--CCCCCCcC-CCCCcCCCcc-----cccee---e--------ccccCCcEEEecHhhhhc-cHHHHHHHHHhCC-CCC
Confidence 2 12333211 0111111111 00000 0 1122357776 7777531 1111233455553 233
Q ss_pred cceEEeeeeeecCCccccccC-------Cccc--------CchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHH
Q 006917 341 MKTISVTEYLNYEAGKFSKSK-------GVGV--------FGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKL 405 (625)
Q Consensus 341 ~~~i~~hg~l~~~G~KMSKS~-------GN~I--------~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~ 405 (625)
...++..|+|.+.|.|||||+ |-+- ++..+..++|.+++||-|++..+.-..|..++|+.+.. .
T Consensus 258 ~P~~~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~-~ 336 (771)
T PRK14703 258 RPRQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEF-A 336 (771)
T ss_pred CcceeEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHH-H
Confidence 245667899999999999998 4331 56677777999999999999988777899999998876 4
Q ss_pred hHHHHHH
Q 006917 406 NTELLNN 412 (625)
Q Consensus 406 n~~l~~~ 412 (625)
|++.++.
T Consensus 337 ~R~~ld~ 343 (771)
T PRK14703 337 IRDDLNR 343 (771)
T ss_pred HHHHhcc
Confidence 5544433
No 100
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.25 E-value=1.6e-10 Score=113.54 Aligned_cols=72 Identities=17% Similarity=0.083 Sum_probs=50.6
Q ss_pred EEEE-eecccchhHhHHHHHhhcCCCCccCcceEEeeeee-ecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcC
Q 006917 312 YQFM-GKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYL-NYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNR 388 (625)
Q Consensus 312 i~~~-GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l-~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~ 388 (625)
.|++ |+|++. |+...-+++.++|.+ .| .+.++..+ +.+|.|||||.|+ .++..+.+.++.+.+++.|++..+
T Consensus 120 thViRG~D~~~-~t~~q~~l~~aLg~~--~p-~~~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG 193 (239)
T cd00808 120 THVIRGEEHLS-STPKQILLYEALGWE--PP-KFAHLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLG 193 (239)
T ss_pred CEEEEChhhhh-ChHHHHHHHHHcCCC--CC-ceEeeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcC
Confidence 3444 888763 222333556667753 44 34455665 6899999999999 688888777899999999998743
No 101
>PLN02859 glutamine-tRNA ligase
Probab=99.20 E-value=5.1e-10 Score=125.00 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=67.7
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
++|--+|.|||.||||||+++.+ ...+||. ..|.-++.+--|| |..-...+.+.+.+++++
T Consensus 265 V~tRFaPsPtG~LHiGharaall-N~~~Ar~--~~G~~~LRieDTd----------------p~r~~~e~~~~I~edL~W 325 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFV-DFGLAKE--RGGCCYLRFDDTN----------------PEAEKKEYIDHIEEIVEW 325 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHH-HHHHHHH--hCCEEEEEecCCC----------------CCccchHHHHHHHHHHHH
Confidence 67889999999999999998654 8888884 4565555554444 233455677889999999
Q ss_pred cCcccccccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
||+.+|..+.++ .|.+..-+.-.+|.++|++|.
T Consensus 326 LG~~~d~~~~qS--d~f~~~Y~~A~~Li~~G~AY~ 358 (788)
T PLN02859 326 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYV 358 (788)
T ss_pred cCCCCCCccccc--HhHHHHHHHHHHHHHcCCeEe
Confidence 999988554444 333333345667999999995
No 102
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.19 E-value=2.5e-10 Score=100.39 Aligned_cols=110 Identities=23% Similarity=0.263 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHH
Q 006917 411 NNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQ 490 (625)
Q Consensus 411 ~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~ 490 (625)
..++|.+.|+.+++.+ ++++..|..........|+|+++.++.+++.+.++|++|+++.|+..+++|+...|+|++
T Consensus 8 ~~~~n~~~r~~~~~~~----~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~ 83 (117)
T cd07375 8 RAFLNRLYRLLSFFRK----ALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLD 83 (117)
T ss_pred HHHHHHHHHHHHHHHH----hcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHH
Confidence 3477888888887665 333433321001124568999999999999999999999999999999999999999999
Q ss_pred hccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchh
Q 006917 491 ESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFM 527 (625)
Q Consensus 491 ~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~ 527 (625)
..+||.+.+. ....++.++.++++.++++|+|||
T Consensus 84 ~~~pw~~~~~---~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 84 ELKPALQTEE---LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HhhHHHcCch---hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999998652 344567788899999999999996
No 103
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.19 E-value=8.1e-11 Score=121.52 Aligned_cols=94 Identities=23% Similarity=0.300 Sum_probs=64.7
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
++|--.|.|||.+||||+|++.+ ...+|| +..|.-++.+--||. ......+.+.+.++|++
T Consensus 2 v~tRFAPsPtG~lHiG~~r~al~-n~~~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~i~~~L~w 62 (314)
T PF00749_consen 2 VRTRFAPSPTGYLHIGHARTALL-NYLFAR--KYGGKFILRIEDTDP----------------ERCRPEFYDAILEDLRW 62 (314)
T ss_dssp -EEEE---SSSS-BHHHHHHHHH-HHHHHH--HTTSEEEEEEETSST----------------TTCHHHHHHHHHHHHHH
T ss_pred eeEeeCCCCCCCcccchhHHHHH-HHHHHh--ccCceEEEecccccc----------------ccchhhHHHHHHhheeE
Confidence 35667789999999999999754 899998 566777777766654 12234556778999999
Q ss_pred cCcccc-cccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFD-EFGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D-~~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
||+.+| ..+..+ .+...-++..++|.++|.+|.
T Consensus 63 lGl~~D~~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 63 LGLEWDYGPYYQS--DRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp HT---STCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred EEEecCCeEEeHH--HHHHHHHHHHHHHhhcCCCcc
Confidence 999998 333333 667778888899999999995
No 104
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.14 E-value=2.3e-10 Score=114.69 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=70.1
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006917 29 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWF 108 (625)
Q Consensus 29 i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 108 (625)
+|--.|.|||.+||||+|+++ ....+|| +..|.-++.+--||. ......+.+.+.++|++|
T Consensus 2 ~~RFAPSPtG~lHiG~~rtAL-~n~l~Ar--~~gG~~iLRiEDtD~----------------~R~~~~~~~~I~~dL~wL 62 (272)
T TIGR03838 2 RGRFAPSPSGPLHFGSLVAAL-GSYLDAR--AHGGRWLVRIEDLDP----------------PREVPGAADDILRTLEAY 62 (272)
T ss_pred eeeeCCCCCCcccHHHHHHHH-HHHHHHH--HhCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHHc
Confidence 455678999999999999975 4999999 556776777766664 122335667889999999
Q ss_pred Cccccc-ccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 109 NISFDE-FGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 109 gi~~D~-~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
|+.+|. .++.+ ++...-++..++|.++|.+|.
T Consensus 63 Gl~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 63 GLHWDGEVVYQS--QRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred CCCCCCCeeeee--CCHHHHHHHHHHHHHcCCEEe
Confidence 999993 22333 455677888888999999995
No 105
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.05 E-value=9.1e-10 Score=111.62 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=69.7
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
+++--.|.|||.+||||+++++ ....+|| ...|.-++.+--||. ......+.+.+.++|++
T Consensus 6 v~~RFAPSPTG~LHlG~~rtAL-~n~l~Ar--~~~G~~iLRiEDtD~----------------~R~~~~~~~~I~~dL~w 66 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAAL-GSWLDAR--AHGGRWLLRIEDIDP----------------PREVPGAADAILADLEW 66 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHHH-HHHHHHH--HcCCEEEEEECcCCC----------------CccchHHHHHHHHHHHH
Confidence 6778889999999999999975 4888888 344655555544443 22334566788999999
Q ss_pred cCccccc-ccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDE-FGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~-~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
||+.+|. .+..+ ++...-++..++|.++|.+|.
T Consensus 67 lGl~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 67 LGLHWDGPVLYQS--QRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred CCCCCCCCceEee--ccHHHHHHHHHHHHHCCCcee
Confidence 9999993 32333 456677888889999999995
No 106
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.1e-07 Score=95.45 Aligned_cols=284 Identities=19% Similarity=0.281 Sum_probs=152.3
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
+-+--.|.|+|.+|||-+|++.. -.++|| +..|.-++.+-.||. ..++....+.+.+++++
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALf-NYLfAr--k~gGkFiLRiEDTDq----------------~R~v~gs~e~i~~~L~w 94 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALF-NYLFAR--KKGGKFILRIEDTDQ----------------KRLIRGSEEAIYEDLKW 94 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHH-HHHHHH--hcCCeEEEEeccccc----------------cccccchHHHHHHHHHh
Confidence 33455578899999999999754 888888 566888888877775 23344445568889999
Q ss_pred cCcccccccCC-------CChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCcccccccc--ccCCCCCccccCCCCC
Q 006917 108 FNISFDEFGRT-------STPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLV--EGSCPTLGCNYDSARG 178 (625)
Q Consensus 108 lgi~~D~~~~t-------~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v--~g~cp~~~c~~~~~~g 178 (625)
+||.+|.=.+. ...+..+.-++..++|.+.|.+|+ .||......+-.... .+.-|. |-
T Consensus 95 ~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYr-----CFCs~~rL~~lrk~A~k~~~~p~--------YD 161 (524)
T KOG1149|consen 95 ANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYR-----CFCSEERLDLLRKSALKKHEIPR--------YD 161 (524)
T ss_pred cCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeE-----eccCHHHHHHHHHhhhccCCCCc--------cc
Confidence 99999932111 112344555666778999999997 566653322211110 011110 11
Q ss_pred ccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccc----hHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCC
Q 006917 179 DQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPL----IKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLK 254 (625)
Q Consensus 179 ~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 254 (625)
..| +.++..++.... .-|.|..+| |++++ |.|.+--++.-+ +.....
T Consensus 162 ~kc----a~ls~~ei~~~l--akg~pf~iR------Frl~~~~~~f~DLvyG~v~~~-----------------~d~~~g 212 (524)
T KOG1149|consen 162 RKC----ANLSDAEIKQKL--AKGTPFTIR------FRLPKESPPFTDLVYGKVNHN-----------------VDSNEG 212 (524)
T ss_pred chh----cccCHHHHHHHH--hcCCCeeEE------EecCCCCCChhhhhhhhhhcc-----------------ccccCC
Confidence 111 111111110000 013332221 23322 222222111110 111122
Q ss_pred CcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEE-eecccc---hhHhHHHHH
Q 006917 255 PRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFM-GKDNAP---FHTVMFPST 330 (625)
Q Consensus 255 d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~-GkD~~~---fH~~~~pa~ 330 (625)
|-.|-++ |+++.-.+-+-.|.+. +.|.||+ |.+.+. =|.++.-|
T Consensus 213 D~VvmKS---------DgfPTYHfAnVVDDh~----------------------M~IsHViRGeEWlpST~KH~lLYkA- 260 (524)
T KOG1149|consen 213 DPVVMKS---------DGFPTYHFANVVDDHL----------------------MGISHVIRGEEWLPSTLKHILLYKA- 260 (524)
T ss_pred CcEEEec---------CCCcceeeeeeecchh----------------------cchhheeecchhccccHHHHHHHHH-
Confidence 3323221 1111211212222222 2234444 444332 25554444
Q ss_pred hhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcC--CCCCCCCcCHHHHHHHHhHH
Q 006917 331 LLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNR--PEVSDTLFTWEDFQAKLNTE 408 (625)
Q Consensus 331 l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~--~~~~d~~fs~~~~~~~~n~~ 408 (625)
.| |++|+-....=.++.+|.|.||+.|. +.+.++.+.+|=++++=-|++..+ ....+.-|+.+++.+.+|-+
T Consensus 261 ---fg--W~pPkFaHlpLl~n~d~sKLSKRqgD-~~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~eLieqF~i~ 334 (524)
T KOG1149|consen 261 ---FG--WQPPKFAHLPLLLNPDGSKLSKRQGD-ASVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEELIEQFSIE 334 (524)
T ss_pred ---hC--CCCCceeeeeeeecCCcchhhhhcCc-chHHHHHHcCCChHHHHHHHHHcCCCcccccccccHHHHHHHhchh
Confidence 34 77887554445567899999999986 578888887899999998888753 33455668999998876644
Q ss_pred HH
Q 006917 409 LL 410 (625)
Q Consensus 409 l~ 410 (625)
.+
T Consensus 335 ~l 336 (524)
T KOG1149|consen 335 RL 336 (524)
T ss_pred hh
Confidence 43
No 107
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=98.63 E-value=9.6e-07 Score=82.14 Aligned_cols=115 Identities=12% Similarity=0.119 Sum_probs=91.3
Q ss_pred CCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCC--CCCCCCCCcHHHHHH
Q 006917 374 NIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSII--PDSPKADLHPSTKML 451 (625)
Q Consensus 374 ~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~--p~~~~~~~~~~d~~l 451 (625)
.+|.|++||++++. ...++++|+++.+.. .+++...++.+.+.|+.+++++... .... ........++.++.|
T Consensus 2 ~i~~~a~~~~~l~~-~~~~~~~fd~~~~~~-~~~~~~~yi~ya~aRi~nIl~k~~~---~~~~~~~~~~~ll~~~~E~~L 76 (156)
T cd07956 2 EVGVGAVKYQDLSN-KRIKDYTFDWERMLS-FEGDTGPYLQYAHARLCSILRKAGE---TIEAEADADLSLLPEPDERDL 76 (156)
T ss_pred ccchhHHHHHHHhc-CCCCCceecHHHHHh-hcCCCchhHHHHHHHHHHHHHhCCC---cCccccccchhhcCCHHHHHH
Confidence 46889999999994 445999999999765 4566888999999999999998321 0110 000011234568889
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhcc
Q 006917 452 AEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQ 493 (625)
Q Consensus 452 ~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~ 493 (625)
+..+..+++.+..++.+.+++.++.++.+|+..+|.|++.++
T Consensus 77 ~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~ 118 (156)
T cd07956 77 ILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACP 118 (156)
T ss_pred HHHHHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999998774
No 108
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.83 E-value=0.00016 Score=75.22 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=47.4
Q ss_pred EcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q 006917 30 TSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFN 109 (625)
Q Consensus 30 ~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lg 109 (625)
.+++ -|+|.+||||..++ + -...+.+...|.++++.. .|-|-. . . ..++.++ .++......++-++|
T Consensus 7 ~sGi-qPTG~~HLGnylga-~--k~~~~lq~~~~~~~~~~I-ADlHal--t-~----~~~~~~l-~~~~~~~~~~~lA~G 73 (332)
T PRK12556 7 LTGI-KPTGYPHLGNYIGA-I--KPALQMAKNYEGKALYFI-ADYHAL--N-A----VHDPEQF-RSYTREVAATWLSLG 73 (332)
T ss_pred EEEE-CCCCcchHHHHHHH-H--HHHHHHHHhcCCeEEEEE-echhhc--c-C----CCCHHHH-HHHHHHHHHHHhhee
Confidence 3444 57799999998764 4 233444555566665543 344432 1 0 1245543 344455677888999
Q ss_pred cccc---cccCCCChhHH
Q 006917 110 ISFD---EFGRTSTPQQT 124 (625)
Q Consensus 110 i~~D---~~~~t~~~~~~ 124 (625)
++++ .|..+.-++|.
T Consensus 74 lDP~k~~if~qS~v~~~~ 91 (332)
T PRK12556 74 LDPEDVIFYRQSDVPEIF 91 (332)
T ss_pred ecccceEEEECCCchHHH
Confidence 9887 34445555554
No 109
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=8.2e-05 Score=78.62 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=73.2
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
+|+--||-|+|.||||||..+.+. -|.... |+=.+++-+||. .|..--+++...+.+++..
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLN-----qYfa~~-~~G~LIvRFDDT-------------NPaKE~~eFe~~IleDl~~ 261 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLN-----QYFAQA-YQGKLIVRFDDT-------------NPAKENEEFEDVILEDLSL 261 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHH-----HHHHHh-cCceEEEEecCC-------------CcchhhHHHHHHHHHHHHH
Confidence 678889999999999999976553 333222 233455556663 3455556777889999999
Q ss_pred cCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeee
Q 006917 108 FNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQ 146 (625)
Q Consensus 108 lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~ 146 (625)
|||.+|.+..|+ .|-..+...-.+|++.|.+|..+.+
T Consensus 262 LgIkpd~~TyTS--DyF~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147|consen 262 LGIKPDRVTYTS--DYFDEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred hCcCcceeeech--hhHHHHHHHHHHHHhcCcccccCCc
Confidence 999999995554 6778888889999999999976654
No 110
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.81 E-value=0.00033 Score=73.00 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=43.0
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006917 26 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVY 105 (625)
Q Consensus 26 ~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 105 (625)
++.|.++. -|+|.+||||..+++. .++....|+++.+..+ |.|-.-. . .+..+. ........+..++
T Consensus 2 ~~~v~~G~-~PTG~~HlG~~l~~~~-----~~~~~q~~~~~~i~Ia-D~ha~t~----~-~~~~~~-~~~~~~~~~~~~~ 68 (328)
T TIGR00233 2 KFRVLTGI-QPSGKMHLGHYLGAIQ-----TKWLQQFGVELFICIA-DLHAITV----K-DNTDPD-ALRKAREELAADI 68 (328)
T ss_pred CCEEEEee-CCCcHhHHHHHHHHHH-----HHHHHhCCCCEEEEee-cchhhcC----C-CCCCHH-HHHHHHHHHHHHH
Confidence 34566766 7889999999776422 3333356988766543 3332211 0 011222 2233344456677
Q ss_pred hhcCcccc
Q 006917 106 NWFNISFD 113 (625)
Q Consensus 106 ~~lgi~~D 113 (625)
-++|++++
T Consensus 69 lA~GlDp~ 76 (328)
T TIGR00233 69 LAVGLDPK 76 (328)
T ss_pred HHhCcChh
Confidence 78999887
No 111
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.71 E-value=0.00052 Score=69.69 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=42.8
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+..+|.|+..++..--- +....+. .+.|..+.. -+|. ++|.|||||.+|.|+...+.+ +++.++=++.+
T Consensus 156 ~vp~G~DQ~~~i~l~rd-la~r~n~-~~~p~~l~~-p~l~~l~G~KMSKS~~~~i~l~~~~d---sp~~i~~ki~~ 225 (273)
T cd00395 156 IQPGGSDQWGNITLGRE-LARRFNG-FTIAEGLTI-PLVTKLDGPKFGKSESGPKWLDTEKT---SPYEFYQFWIN 225 (273)
T ss_pred EEEecHHHHHHHHHHHH-HHHHhCC-CCCCeEEee-ccccCCCCCcCCCCCCCCccccccCC---CHHHHHHHHHc
Confidence 88999999765543211 1112211 123444433 4554 899999999999998766543 56677777776
No 112
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.65 E-value=0.00023 Score=76.34 Aligned_cols=68 Identities=13% Similarity=0.014 Sum_probs=42.7
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeee-ecCCccccccCCcccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYL-NYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l-~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+..+|.|+...+..-- -+....+.. .+ ..+.+-.| ..+|.|||||.||.|++.|= ..+++.++=++++
T Consensus 189 iq~gG~DQ~~ni~~gr-dl~~r~~~~--~~-~~lt~PlL~g~dG~KMsKS~~naI~L~d~---~tsp~~i~qki~~ 257 (410)
T PRK13354 189 LQIGGTDQWGNILMGR-DLQRKLEGE--EQ-FGLTMPLLEGADGTKMGKSAGGAIWLDPE---KTSPYEFYQFWMN 257 (410)
T ss_pred EEEecHHHHHHHHHHH-HHHHHhCCC--Cc-eEeccCCccCCCCCccCCCCCCceeccCC---CCCHHHHHHHHHc
Confidence 8899999975543211 111222321 22 22223334 47999999999999999873 5667777777775
No 113
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=97.51 E-value=0.00064 Score=59.92 Aligned_cols=82 Identities=11% Similarity=0.088 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhc
Q 006917 413 LGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQES 492 (625)
Q Consensus 413 l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~ 492 (625)
+++.+.|+.++++|..........+.. ....++.++.|+..+..++..+..+++.++++.++.++.+|+..+|+|++.+
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~~~~~-~~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~ 79 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDEYDDD-FLLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNV 79 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCCHCCH-HHS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHcCCCcCCccccchh-hhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 468899999999984321111111110 0113567889999999999999999999999999999999999999999988
Q ss_pred ccc
Q 006917 493 QFW 495 (625)
Q Consensus 493 ~pw 495 (625)
+-+
T Consensus 80 ~I~ 82 (119)
T PF05746_consen 80 RIL 82 (119)
T ss_dssp -ST
T ss_pred ccc
Confidence 643
No 114
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.48 E-value=0.00061 Score=73.17 Aligned_cols=68 Identities=13% Similarity=-0.008 Sum_probs=42.5
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeee-ecCCccccccCCcccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYL-NYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l-~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+..+|.|+...+..- --+....+.. . ...+..-.| ..+|+|||||.||.|++.|- ..+++.++=++.+
T Consensus 191 i~~gG~DQ~~ni~~g-rdla~r~~~~--~-~~~l~~plL~~~~G~KMsKS~~naI~L~d~---~tsp~~i~qki~~ 259 (408)
T PRK05912 191 LQLGGSDQWGNILSG-RDLQRRYGGK--P-QFGLTMPLLTGLDGKKMGKSEGNAVWLDEE---KTSPYEMYQKWMN 259 (408)
T ss_pred EEeccHHHHHHHHHH-HHHHHHhCCC--C-eEEEecCCcCCCCCCcccCCCCCceeCCCC---CCCHHHHHHHHhc
Confidence 888999997543321 1111222221 1 111222334 37899999999999999872 5678888888876
No 115
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.45 E-value=0.0013 Score=69.99 Aligned_cols=86 Identities=16% Similarity=0.228 Sum_probs=51.2
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
.|.+++ -|+|.|||||..++ | .- ..+.+...|++++|.. .|-|-.- ...+|.++.+. ...+..++-+
T Consensus 4 rvlSGi-qPTG~lHLGNylGa-i-k~-~v~lq~q~~~~~~~~I-ADlHAlT-------~~~dp~~lr~~-~~e~aa~~LA 70 (431)
T PRK12284 4 RVLTGI-TTTGTPHLGNYAGA-I-RP-AIAASRQPGVESFYFL-ADYHALI-------KCDDPARIQRS-TLEIAATWLA 70 (431)
T ss_pred EEEEEe-cCCCcchHHHHHHH-H-HH-HHHHHHhCCCcEEEEe-echhhcc-------CCCCHHHHHHH-HHHHHHHHHH
Confidence 355666 78899999997774 4 22 3334444588876543 3433321 01345544443 3446778888
Q ss_pred cCcccc---cccCCCChhHHHH
Q 006917 108 FNISFD---EFGRTSTPQQTEI 126 (625)
Q Consensus 108 lgi~~D---~~~~t~~~~~~~~ 126 (625)
.|++++ .|..+..++|.+.
T Consensus 71 ~GlDPek~~if~QSdvpeh~EL 92 (431)
T PRK12284 71 AGLDPERVTFYRQSDIPEIPEL 92 (431)
T ss_pred hCCCccceEEEECCcchhHHHH
Confidence 999987 4555555666444
No 116
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.40 E-value=0.00056 Score=69.40 Aligned_cols=67 Identities=19% Similarity=0.078 Sum_probs=43.0
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+..+|.|+..++..-- -+....+. .. ...+.|.+|. ++|+|||||.+|.+| ..+. -+++.++=++.+
T Consensus 154 l~~~G~DQ~~~i~~~r-d~a~r~~~--~~-~~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~---dsp~~i~~Ki~~ 221 (269)
T cd00805 154 LQLGGSDQRGNITLGR-DLIRKLGY--KK-VVGLTTPLLTGLDGGKMSKSEGNAIW-DPVL---DSPYDVYQKIRN 221 (269)
T ss_pred eeEecHHHHHHHHHHH-HHHHHhCC--CC-cEEEeeccccCCCCCcccCCCCCccc-ccCC---CCHHHHHHHHHc
Confidence 8899999976554211 11122232 22 2344566664 899999999999997 4443 367777777776
No 117
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=97.35 E-value=0.0017 Score=66.28 Aligned_cols=71 Identities=13% Similarity=0.180 Sum_probs=43.9
Q ss_pred EcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q 006917 30 TSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFN 109 (625)
Q Consensus 30 ~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lg 109 (625)
.++. -|+|.+||||..++ + -.+.+.+ ..|+++.+..+ |.|..-. ...++ +-+.++...+..++.++|
T Consensus 3 ~tG~-~PTG~lHLG~~~~a-l--~~~~~lQ-~ag~~~~~~Ia-D~ha~t~------~~~~~-~~~~~~~~~~~~~~lA~G 69 (280)
T cd00806 3 LSGI-QPSGSLHLGHYLGA-F--RFWVWLQ-EAGYELFFFIA-DLHALTV------KQLDP-EELRQNTRENAKDYLACG 69 (280)
T ss_pred EEee-CCCchhhHHHHHHH-H--HHHHHHH-hCCCCEEEEec-chHHHhC------CCCCH-HHHHHHHHHHHHHHHHcC
Confidence 4444 68899999998874 3 3444443 44888776643 4443311 11233 344556667788888899
Q ss_pred cccc
Q 006917 110 ISFD 113 (625)
Q Consensus 110 i~~D 113 (625)
++++
T Consensus 70 ~dp~ 73 (280)
T cd00806 70 LDPE 73 (280)
T ss_pred CCcc
Confidence 9875
No 118
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.24 E-value=0.0023 Score=66.83 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=46.2
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006917 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKA 103 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 103 (625)
+++++|.++. -|+|.+||||+. ++ -.++++++ .|+++.+..+ |.|..-.- ..++ +-+.++...+..
T Consensus 28 ~~~~~v~~G~-~PTG~lHLG~~~-~~---~~~~~lq~-~g~~~~i~Ia-D~ha~~~~------~~~~-~~i~~~~~~~~~ 93 (329)
T PRK08560 28 KEEPKAYIGF-EPSGKIHLGHLL-TM---NKLADLQK-AGFKVTVLLA-DWHAYLND------KGDL-EEIRKVAEYNKK 93 (329)
T ss_pred CCCCEEEEcc-CCCCcchhhhhH-HH---HHHHHHHH-CCCeEEEEEc-cchhhcCC------CCCH-HHHHHHHHHHHH
Confidence 3455666666 788999999964 33 33666655 5888765543 33332110 0233 344555566788
Q ss_pred HHhhcCcccc
Q 006917 104 VYNWFNISFD 113 (625)
Q Consensus 104 ~~~~lgi~~D 113 (625)
++.++|++.+
T Consensus 94 ~~~A~G~dp~ 103 (329)
T PRK08560 94 VFEALGLDPD 103 (329)
T ss_pred HHHHcCCChh
Confidence 8888998765
No 119
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.13 E-value=0.0028 Score=67.19 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=44.1
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006917 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAV 104 (625)
Q Consensus 25 ~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 104 (625)
++..|.++. -|+|.+|||| + ++..--+..+ ...|++|.++.+ |-|..-. .+.|.++.++ ......+...
T Consensus 65 ~~~~v~~G~-~PTG~lHLG~--g-~i~~~~~~~l-q~~G~~v~~~Ia-D~hA~~~----~~~g~~l~~i-~~~~~~~~~~ 133 (383)
T PTZ00126 65 ERPICYDGF-EPSGRMHIAQ--G-ILKAINVNKL-TKAGCVFVFWVA-DWFALLN----NKMGGDLEKI-RKVGEYFIEV 133 (383)
T ss_pred CCCEEEEEE-CCCCcccccc--h-HhHhHHHHHH-HhCCCeEEEEEc-cceeecC----CCCCCCHHHH-HHHHHHHHHH
Confidence 444555555 6889999999 3 2322334443 455999877643 2221110 0122333333 4455567778
Q ss_pred HhhcCcccc
Q 006917 105 YNWFNISFD 113 (625)
Q Consensus 105 ~~~lgi~~D 113 (625)
+.++|++.+
T Consensus 134 ~~A~GlDp~ 142 (383)
T PTZ00126 134 WKAAGMDMD 142 (383)
T ss_pred HHHhCCCcc
Confidence 889999876
No 120
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.78 E-value=0.0056 Score=64.08 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=40.4
Q ss_pred EcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q 006917 30 TSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFN 109 (625)
Q Consensus 30 ~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lg 109 (625)
.++. -|+|.+||||..+. +. -+.+++. +++|.++.+ |-|-.-. ..++. -+..+......++-++|
T Consensus 5 ~~G~-~PTG~lHLG~~~g~-~~--~~~~lQ~--~~~~~~~Ia-D~ha~t~-------~~~~~-~i~~~~~~~~~~~lA~G 69 (333)
T PRK00927 5 LSGI-QPTGKLHLGNYLGA-IK--NWVELQD--EYECFFCIA-DLHALTV-------PQDPE-ELRENTRELAADYLACG 69 (333)
T ss_pred EEee-CCCccchHHhHHHH-HH--HHHHHHh--cCCeEEEEe-cHHHHhC-------CCCHH-HHHHHHHHHHHHHHeEc
Confidence 3444 67899999998874 42 2444444 377766653 3332211 12333 33444556777888889
Q ss_pred cccc
Q 006917 110 ISFD 113 (625)
Q Consensus 110 i~~D 113 (625)
++++
T Consensus 70 lDp~ 73 (333)
T PRK00927 70 IDPE 73 (333)
T ss_pred cChh
Confidence 8876
No 121
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.0074 Score=63.99 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=40.2
Q ss_pred CCCC-cccchhhhhhhhHHHHHHHHHHHCCCceeeecc--CcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006917 35 YVNN-VPHLGNIIGCVLSADVFARYCRLRGYNALYICG--TDEYGTATETKAMEENCTTQQICDKYYAIHKAVYN 106 (625)
Q Consensus 35 y~ng-~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g--~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 106 (625)
=|+| .+||||+-. .-.++|++ ..|++|.++.| +--.|+|.-......-.+ .+.+..+.+.+++++.
T Consensus 40 DPTa~slHlGhlv~----l~kL~~fQ-~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~-~e~v~~n~~~i~~ql~ 108 (401)
T COG0162 40 DPTAPSLHLGHLVP----LMKLRRFQ-DAGHKPIVLIGDATAMIGDPSGKSEERKLLT-RETVLENAETIKKQLG 108 (401)
T ss_pred CCCCCccchhhHHH----HHHHHHHH-HCCCeEEEEecccceecCCCCCCHHHHhhcc-HHHHHHHHHHHHHHhc
Confidence 5778 899999753 35666664 66999888765 334677753333222222 4555566665555544
No 122
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=96.52 E-value=0.038 Score=48.75 Aligned_cols=78 Identities=13% Similarity=0.118 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhCCCCCCCCC-CCCCC----CCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHH
Q 006917 414 GNFVNRVLSFIAKPPGRGYGS-IIPDS----PKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAY 488 (625)
Q Consensus 414 ~n~~~R~~~~~~k~~~~~~~~-~~p~~----~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y 488 (625)
+|.+.|+.+++++... ++ .++.. .....++.++.|+..+..+.+.+..++.+.+++.++.++.+++..+|.|
T Consensus 2 qY~~~Ri~nIl~k~~~---~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~f 78 (122)
T smart00836 2 QYAHARICSILRKAGE---AGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSF 78 (122)
T ss_pred cHHHHHHHHHHHHHHh---cCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 5778999999987321 11 12210 0112246688899999999999999999999999999999999999999
Q ss_pred HHhccc
Q 006917 489 LQESQF 494 (625)
Q Consensus 489 ~~~~~p 494 (625)
++..+-
T Consensus 79 y~~v~V 84 (122)
T smart00836 79 YNKCRV 84 (122)
T ss_pred HccCcc
Confidence 998753
No 123
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.42 E-value=0.011 Score=63.74 Aligned_cols=94 Identities=15% Similarity=0.269 Sum_probs=64.6
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
++|--||-|||.|||||+-. +- -++ -|.+..|- |.|+-- || ..|+.-.++|-..++++..+
T Consensus 249 V~TRFPPEPNG~LHIGHaKA-In-vNF--gyAk~~~G-~cyLRf-DD-------------TNPEkEee~yf~sI~e~V~W 309 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKA-IN-VNF--GYAKAHGG-VCYLRF-DD-------------TNPEKEEEEYFESIKEMVAW 309 (764)
T ss_pred eEEeCCCCCCceeeecchhh-ee-ech--hhhhhhCC-eEEEec-CC-------------CCcchhhHHHHHHHHHHHHH
Confidence 67999999999999999974 22 222 23333332 333332 33 24566667888899999999
Q ss_pred cCcccccccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
||..+ |--|.+..|-...-++-..|+.+|++|.
T Consensus 310 LG~~P--~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 310 LGFEP--YKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred hCCCc--eeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 99865 3336555666666777778999999995
No 124
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=94.16 E-value=0.29 Score=51.87 Aligned_cols=76 Identities=11% Similarity=0.045 Sum_probs=49.0
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006917 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKA 103 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 103 (625)
+++++|.++. -|+|.+||||.. + ...++++++ .|++|.+..+ |.|..- . + +.++++ +.++......
T Consensus 64 ~~~~~iytG~-~PSG~lHLGh~~-~---~~~~~~lQ~-~g~~~~i~Ia-D~ha~~--~---~-~~~~e~-~~~~~~~~~~ 129 (368)
T PRK12285 64 GKPFAVYTGF-MPSGPMHIGHKM-V---FDELKWHQE-FGANVYIPIA-DDEAYA--A---R-GLSWEE-TREWAYEYIL 129 (368)
T ss_pred CCCeEEEEcc-CCCCCccHHHHH-H---HHHHHHHHh-cCCCEEEEec-chHHHh--c---C-CCCHHH-HHHHHHHHHH
Confidence 4567777776 778999999964 2 345555555 7888765543 444321 1 1 345544 4444455777
Q ss_pred HHhhcCcccc
Q 006917 104 VYNWFNISFD 113 (625)
Q Consensus 104 ~~~~lgi~~D 113 (625)
++.++|++.+
T Consensus 130 ~~lA~G~Dp~ 139 (368)
T PRK12285 130 DLIALGFDPD 139 (368)
T ss_pred HHHHhCCCcc
Confidence 8899999987
No 125
>PLN02486 aminoacyl-tRNA ligase
Probab=93.87 E-value=0.48 Score=50.39 Aligned_cols=78 Identities=10% Similarity=-0.006 Sum_probs=50.1
Q ss_pred CCCcEEEEcCCCCCCC-cccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHH
Q 006917 23 GKRNILITSALPYVNN-VPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIH 101 (625)
Q Consensus 23 ~~~~~~i~~~~Py~ng-~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 101 (625)
.+++++|.++. -|+| .+||||+- +...++.+++..|..+.++ -+|+ +..+.+ +.+.+ -+.++....
T Consensus 70 ~~~~~~vYtG~-~PSg~~lHlGHlv----~~~~~~~lQ~~~~~~~~I~-iaD~-----e~~~~~-~~~~e-~i~~~~~en 136 (383)
T PLN02486 70 KGEKFYLYTGR-GPSSEALHLGHLI----PFMFTKYLQDAFKVPLVIQ-LTDD-----EKFLWK-NLSVE-ESQRLAREN 136 (383)
T ss_pred cCCCeEEEeCC-CCCCccccHHHHH----HHHHHHHHHHhCCCeEEEE-ecCH-----HHHhhc-CCCHH-HHHHHHHHH
Confidence 35678888887 8999 59999954 3556665555556665555 4454 222332 45644 445555667
Q ss_pred HHHHhhcCcccc
Q 006917 102 KAVYNWFNISFD 113 (625)
Q Consensus 102 ~~~~~~lgi~~D 113 (625)
.+++.++|++++
T Consensus 137 ~~~iiA~G~dp~ 148 (383)
T PLN02486 137 AKDIIACGFDVE 148 (383)
T ss_pred HHHHHHhCCCCc
Confidence 778888998876
No 126
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=92.37 E-value=0.24 Score=38.16 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.7
Q ss_pred HHHHHH-HhccHHHHHHHHHHHHHHHhH
Q 006917 461 QYIEAM-EKVKLKQGLRIGMSISSEGNA 487 (625)
Q Consensus 461 ~v~~a~-~~~~~~~a~~~i~~l~~~~N~ 487 (625)
++.++| ++|+++.|+..|+++++.+|+
T Consensus 1 ~F~~AmdDDfNT~~Ala~lf~l~~~~N~ 28 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAALFELVKEINR 28 (63)
T ss_dssp HHHHHHCBTS-HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHhHhcCcHHHHHHHHHHHHHHHH
Confidence 357888 699999999999999999999
No 127
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=92.34 E-value=0.14 Score=52.65 Aligned_cols=41 Identities=10% Similarity=0.281 Sum_probs=27.9
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeecc
Q 006917 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICG 71 (625)
Q Consensus 25 ~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g 71 (625)
+++.|.++. -|+|.+||||+.. + ..+.++++ .|++|.++.|
T Consensus 4 ~~~~~y~G~-~PTg~lHlG~l~~-~---~~~~~lq~-~g~~~~i~ia 44 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGDLHLGHLVP-I---MKLIWLQK-AGFKVIILIA 44 (292)
T ss_dssp SSEEEEEEE-ESSSS-BHHHHHH-H---HHHHHHHH-TTSEEEEEEE
T ss_pred CCcEEEEeE-CCCCcccchHHHH-H---HHHHHHHh-cCCccceEec
Confidence 456666666 6889999998763 2 44555555 8999988765
No 128
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.05 E-value=0.57 Score=48.08 Aligned_cols=92 Identities=15% Similarity=0.170 Sum_probs=57.1
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCC-ceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006917 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGY-NALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKA 103 (625)
Q Consensus 25 ~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~-~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 103 (625)
.++.|.|+. -|+|.+||||..++ + -.++.-..++ ++++ +=.|.|..-+ .+..+++-...+..+...
T Consensus 4 ~~~~vlSG~-~PSG~lHLGny~ga-~----~~~v~~q~~~~~~f~-~IaDlha~t~------~~~~~~~~l~~~~~e~~a 70 (314)
T COG0180 4 KKFRVLSGI-QPSGKLHLGNYLGA-I----RNWVLLQEEYYECFF-FIADLHAITV------RQDPTEEDLRQATREVAA 70 (314)
T ss_pred CCceEEecC-CCCCCcchhHhHHH-H----HHHHHHhcccCceEE-EEecHHHhhc------CCCChHHHHHHHHHHHHH
Confidence 345666776 78899999997763 3 2344444454 6544 3455554322 122333445556666777
Q ss_pred HHhhcCcccc---cccCCCChhHHHHHHH
Q 006917 104 VYNWFNISFD---EFGRTSTPQQTEICQA 129 (625)
Q Consensus 104 ~~~~lgi~~D---~~~~t~~~~~~~~v~~ 129 (625)
++-++|++++ .|..+..++|.+..+-
T Consensus 71 ~~LA~GiDP~k~~if~QS~v~e~~eLa~~ 99 (314)
T COG0180 71 DYLAVGLDPEKSTIFLQSEVPEHAELAWL 99 (314)
T ss_pred HHHHhccCccccEEEEccCchHHHHHHHH
Confidence 8889999998 4677777777665554
No 129
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=90.80 E-value=1.4 Score=46.20 Aligned_cols=71 Identities=13% Similarity=0.044 Sum_probs=41.3
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006917 29 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWF 108 (625)
Q Consensus 29 i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 108 (625)
|.++. -|+|.+||||..+.+. -.+++...|. | +++=.|.|..- . ...++.++. ++......++.++
T Consensus 5 v~sG~-~PTG~~HLGn~l~~~~----~~~~lQ~~~~-~-~i~IaD~ha~~--~----~~~~~~~i~-~~~~~~~~~~lA~ 70 (333)
T PRK12282 5 ILTGD-RPTGKLHLGHYVGSLK----NRVALQNEHE-Q-FVLIADQQALT--D----NAKNPEKIR-RNILEVALDYLAV 70 (333)
T ss_pred EEEee-CCCCcchHHHHHHHHH----HHHHHHhCCC-E-EEEEccchhHh--C----CCCCHHHHH-HHHHHHHHHHHHh
Confidence 33444 5679999999776322 2224444564 5 44447777321 1 123554444 4445566777888
Q ss_pred Ccccc
Q 006917 109 NISFD 113 (625)
Q Consensus 109 gi~~D 113 (625)
|++++
T Consensus 71 G~dp~ 75 (333)
T PRK12282 71 GIDPA 75 (333)
T ss_pred CcChh
Confidence 99887
No 130
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=90.52 E-value=0.45 Score=43.60 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=61.4
Q ss_pred HHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHH
Q 006917 55 FARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKL 134 (625)
Q Consensus 55 ~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L 134 (625)
+||++|+.||++.+.. +.-+..|+..|.++|.- +...-...++.. ++|+. -.|+++. .....+.+++.++
T Consensus 18 LARwLRllGydt~~~~--~~~d~~i~~i~~~e~rI---llTRDr~L~~r~--k~g~~-~i~i~~~--s~~~Ql~e~~~~~ 87 (165)
T COG1656 18 LARWLRLLGYDTVYSS--NESDDEIILIAKKEGRI---LLTRDRELYKRA--KLGIK-AILIRSD--SIEEQLAEFLARL 87 (165)
T ss_pred HHHHHHHcCCceeeec--cCCcHHHHHHHhcCCeE---EEeccHHHHHHh--hccCc-eEEEeCC--CHHHHHHHHHHHh
Confidence 6999999999999997 33345677777765521 000001112221 34442 2355444 4567777777777
Q ss_pred HHCCCEEEeeeeeeeeCCCCcccc---ccccccCCCCCccccCCCCCccccccCCCCC
Q 006917 135 LENNWLSEYTTQQLYCDTCKRFLA---DRLVEGSCPTLGCNYDSARGDQCEKCGKLLN 189 (625)
Q Consensus 135 ~~~G~iy~~~~~~~y~~~~~~~l~---~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~ 189 (625)
-.++-+.. ..-=|+.|+.-|. -.+|++.-|...-.. ...-..|+.||+.+-
T Consensus 88 ~l~~~~~~---e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~-~~~f~~C~~CgkiYW 141 (165)
T COG1656 88 GLKPRLFP---EFSRCPECNGELEKVSREEVKEKVPEKVYRN-YEEFYRCPKCGKIYW 141 (165)
T ss_pred ccchhccc---ccccCcccCCEeccCcHHHHhhccchhhhhc-ccceeECCCCccccc
Confidence 66652221 1234666665543 334444444200000 011224777777553
No 131
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=89.96 E-value=0.61 Score=34.68 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.5
Q ss_pred HHHHH-HhccHHHHHHHHHHHHHHHhHHHHh
Q 006917 462 YIEAM-EKVKLKQGLRIGMSISSEGNAYLQE 491 (625)
Q Consensus 462 v~~a~-~~~~~~~a~~~i~~l~~~~N~y~~~ 491 (625)
+.++| ++++++.|+..++++++.+|.+++.
T Consensus 2 f~~al~DD~NT~~Al~~l~~l~~~~N~~l~~ 32 (56)
T smart00840 2 FEEAMDDDFNTPEALAVLFELAREINRLLLK 32 (56)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHHHHHhhc
Confidence 56778 7999999999999999999998853
No 132
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=88.52 E-value=0.98 Score=53.86 Aligned_cols=95 Identities=16% Similarity=0.266 Sum_probs=61.4
Q ss_pred HHHHHHHHHH---HHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccC
Q 006917 125 EICQAIFKKL---LENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVC 201 (625)
Q Consensus 125 ~~v~~~~~~L---~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~ 201 (625)
+.+.+..+.. .+.+-..+-+.....||+|+..... ..||. ||..-.--..|..||..+.+.+-..-.|..|
T Consensus 642 R~I~kAa~~a~~~~d~~G~ieVEV~~rkCPkCG~~t~~----~fCP~--CGs~te~vy~CPsCGaev~~des~a~~CP~C 715 (1337)
T PRK14714 642 RDVAKAAKHAPDMSDEGGVIEVEVGRRRCPSCGTETYE----NRCPD--CGTHTEPVYVCPDCGAEVPPDESGRVECPRC 715 (1337)
T ss_pred ccHHHHHHhhhhccccCCeEEEEEEEEECCCCCCcccc----ccCcc--cCCcCCCceeCccCCCccCCCccccccCCCC
Confidence 4455555433 2344455666678899999987653 48999 9986544458999999876654335689999
Q ss_pred CCccEEEeccceeeeccchHHHHHHH
Q 006917 202 QATPKIRDTDHLFLELPLIKDKLEEY 227 (625)
Q Consensus 202 g~~~~~~~~~~~f~~l~~~~~~l~~~ 227 (625)
|.++. .....-++++.+.....+-
T Consensus 716 Gtplv--~~~~~~i~~~~~~~~A~~~ 739 (1337)
T PRK14714 716 DVELT--PYQRRTINVKEEYRSALEN 739 (1337)
T ss_pred CCccc--ccceEEecHHHHHHHHHHH
Confidence 99875 3333345665544444433
No 133
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.74 E-value=0.29 Score=50.16 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=31.3
Q ss_pred EEEEeecccchhHhHHHHHhhcCC----CCccCcceEEeee--eee-cCC-ccccccCCc-ccCchh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTE----ENWTLMKTISVTE--YLN-YEA-GKFSKSKGV-GVFGND 369 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~----~~~~~~~~i~~hg--~l~-~~G-~KMSKS~GN-~I~~~d 369 (625)
+--+|.|+.. |-.+=--+....+ .-+++|..+ .+. ++. ++| +|||||.+| +|.+.|
T Consensus 148 ~VPVG~DQ~q-HleLtRDiA~rfn~~y~~~f~~P~~~-~~~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 148 LVPVGEDQDQ-HLELTRDIARRFNHLYGEVFPLPEAL-ISKVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred eeccCCCchH-HHHHHHHHHHHHHhhcCCccCCcccc-ccCCCcccCCCCCCcccccCCCCeeeccC
Confidence 4457999874 3322222222222 113455443 343 654 788 899999999 775543
No 134
>PLN02886 aminoacyl-tRNA ligase
Probab=86.59 E-value=2.4 Score=45.16 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=50.9
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006917 29 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWF 108 (625)
Q Consensus 29 i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 108 (625)
|.+++ -|+|.+||||..++ + .-+..+++ |++++ ++=.|-|-.-+ ..++.++- ++...+..++-++
T Consensus 49 v~sGi-qPSG~lHLGnylGa-i--~~~v~lQ~--~~~~~-~~IADlHAlt~-------~~~~~~lr-~~~~~~~a~~lA~ 113 (389)
T PLN02886 49 VVSGV-QPTGSIHLGNYLGA-I--KNWVALQE--TYDTF-FCVVDLHAITL-------PHDPRELG-KATRSTAAIYLAC 113 (389)
T ss_pred EEEEE-CCCCccHHHHHHHH-H--HHHHHHhc--cCCEE-EEEecHHHhhC-------CCCHHHHH-HHHHHHHHHHHHc
Confidence 44555 67799999997763 4 33334433 88874 44456554421 22555444 4444577888999
Q ss_pred Ccccc---cccCCCChhHHHH
Q 006917 109 NISFD---EFGRTSTPQQTEI 126 (625)
Q Consensus 109 gi~~D---~~~~t~~~~~~~~ 126 (625)
|++++ .|..+..++|.+.
T Consensus 114 GlDP~ks~if~QS~v~e~~eL 134 (389)
T PLN02886 114 GIDPSKASVFVQSHVPAHAEL 134 (389)
T ss_pred CcCccceEEEEeCCCchhHHH
Confidence 99987 4555666666544
No 135
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=85.40 E-value=0.5 Score=50.10 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=38.7
Q ss_pred EEEEeecccchhHhHHHHHhhcC----CCCccCcceEEeeeee-ecCCccccccC-CcccCchhhhhcCCCchhHHHHHH
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGT----EENWTLMKTISVTEYL-NYEAGKFSKSK-GVGVFGNDVKDTNIPAEVWRYYLI 385 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~----~~~~~~~~~i~~hg~l-~~~G~KMSKS~-GN~I~~~d~l~~~~g~D~lR~~ll 385 (625)
+..+|.|+..++..- --+...+ |. +.|..++ |-++ -++|.|||||. +|.|.+.| +++.++=-+.
T Consensus 206 lvPvG~DQ~~h~~lt-RdiA~r~n~~~gf--~~P~~l~-~~~lpgL~G~KMSkS~~~s~I~L~D------~p~~I~kKI~ 275 (368)
T PRK12285 206 LVPVGIDQDPHIRLT-RDIAERLHGGYGF--IKPSSTY-HKFMPGLTGGKMSSSKPESAIYLTD------DPETVKKKIM 275 (368)
T ss_pred EEEeccchHHHHHHH-HHHHHHHhhhcCC--CCchhHh-hhcccCCCCCcCCCCCCCCeeeccC------CHHHHHHHHH
Confidence 777899997655321 1112222 43 3454443 4566 48999999998 67887665 2345555555
Q ss_pred h
Q 006917 386 T 386 (625)
Q Consensus 386 ~ 386 (625)
+
T Consensus 276 k 276 (368)
T PRK12285 276 K 276 (368)
T ss_pred h
Confidence 4
No 136
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=85.25 E-value=0.58 Score=42.84 Aligned_cols=31 Identities=39% Similarity=0.568 Sum_probs=24.4
Q ss_pred HHHHHHHCCCceeeeccCcccchHHHHHHHHcC
Q 006917 55 FARYCRLRGYNALYICGTDEYGTATETKAMEEN 87 (625)
Q Consensus 55 ~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 87 (625)
++|++|+.|++|.+..+.+| ..|...|.++|
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D--~~il~~A~~e~ 42 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDD--DEILELAREEG 42 (147)
T ss_pred HHHHHHHCCCcEEEeCCCCh--HHHHHHhhhCC
Confidence 68999999999999986644 55666676665
No 137
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=84.73 E-value=0.98 Score=48.18 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=27.2
Q ss_pred cEEEEcCCCCCCC-cccchhhhhhhhHHHHHHHHHHHCCCceeeecc
Q 006917 26 NILITSALPYVNN-VPHLGNIIGCVLSADVFARYCRLRGYNALYICG 71 (625)
Q Consensus 26 ~~~i~~~~Py~ng-~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g 71 (625)
++.+.++. -|+| .+||||+.. .-.+++++ ..|++|.++.|
T Consensus 30 ~~~vy~G~-dPTg~~lHlGh~v~----l~~l~~lq-~~G~~~~ilig 70 (377)
T TIGR00234 30 KIKLYVGF-DPTAPSLHLGHLVP----LLKLRDFQ-QAGHEVIVLLG 70 (377)
T ss_pred CCEEEEee-CCCCCCccHHHHHH----HHHHHHHH-HCCCcEEEEEe
Confidence 34555655 7889 899999763 23455555 47999887764
No 138
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=82.93 E-value=0.5 Score=50.13 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=49.0
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHH-CCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 29 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRL-RGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 29 i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~-~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
|.+++ -|+|.+||||..++ + ..|..+ .|++++ ++=.|.|-.-+ ...++.+ +..+...+..++-+
T Consensus 5 v~sGi-qPSG~~HLGnylG~-i-----k~wv~lq~~~~~~-~~IADlHAlt~------~~~d~~~-ir~~~~~~~a~~lA 69 (398)
T PRK12283 5 VLSGM-RPTGRLHLGHYHGV-L-----KNWVKLQHEYECF-FFVADWHALTT------HYETPEV-IEKNVWDMVIDWLA 69 (398)
T ss_pred EEEEe-CCCCcchHHHHHHH-H-----HHHHHHhcCCcEE-EEeecHHHHhC------CCCCHHH-HHHHHHHHHHHHHH
Confidence 34554 68899999997763 4 244443 477764 44455543311 0124443 33444567889999
Q ss_pred cCcccc---cccCCCChhHHH
Q 006917 108 FNISFD---EFGRTSTPQQTE 125 (625)
Q Consensus 108 lgi~~D---~~~~t~~~~~~~ 125 (625)
+|++++ .|..+..++|.+
T Consensus 70 ~GlDP~k~~if~QS~v~eh~e 90 (398)
T PRK12283 70 AGVDPAQATLFIQSKVPEHAE 90 (398)
T ss_pred cCCCccceEEEECCCchHHHH
Confidence 999886 456666666633
No 139
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=82.28 E-value=2.4 Score=43.60 Aligned_cols=57 Identities=16% Similarity=0.041 Sum_probs=32.9
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCC--ccCcceEEeeeeee-cCCc-cccccCCc-ccCchhh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEEN--WTLMKTISVTEYLN-YEAG-KFSKSKGV-GVFGNDV 370 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~--~~~~~~i~~hg~l~-~~G~-KMSKS~GN-~I~~~d~ 370 (625)
+.++|.|+..++..-- -+....+.. .+.| ..+.+.++. ++|. |||||.+| .|++.|-
T Consensus 152 ~~~~G~DQ~~~~~l~r-d~a~k~~~~~~~~~p-~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 152 LVPGGIDQRGHIELAR-DLARKFNYKEIFPKP-AGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp EEEEEGGGHHHHHHHH-HHHHHHTHHSTSSS--EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred cccccchHHHHHHHHH-HHHhhhcccccccCc-hheeeccccccCCccccCccCCccEEEEecc
Confidence 8999999975543211 111112210 1133 344455664 7999 99999999 8877663
No 140
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=81.97 E-value=21 Score=41.18 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 006917 408 ELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNA 487 (625)
Q Consensus 408 ~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~ 487 (625)
+-...+...+.|+..++.+... ...+.+. ......+.|+.|...+..+...+..++..-++..++..+..|....+.
T Consensus 566 ~~~~~l~~~~kRv~NIl~k~~~-~~~~~v~--~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~ 642 (682)
T PRK01233 566 PEFKALAAANKRVSNILKKAEG-KVSGEVD--PALFEEPAEKALYAALEELKPKVEPALAAGDYQAALEALAALRPPVDA 642 (682)
T ss_pred hhHHHHHHHHHHHHHHHhcccc-ccCCccC--hhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhHHHH
Confidence 3346677778999999887321 0111111 112345778899999999888888888888999999999999999999
Q ss_pred HHHhc
Q 006917 488 YLQES 492 (625)
Q Consensus 488 y~~~~ 492 (625)
||+..
T Consensus 643 FFD~V 647 (682)
T PRK01233 643 FFDNV 647 (682)
T ss_pred HhCCC
Confidence 99986
No 141
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=80.51 E-value=7.2 Score=41.59 Aligned_cols=41 Identities=17% Similarity=0.072 Sum_probs=26.8
Q ss_pred CcceEEe-eeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHh
Q 006917 340 LMKTISV-TEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 340 ~~~~i~~-hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+|..++. +.++. ++|+|||||.+|.|.+.| +++.+|=-+.+
T Consensus 246 ~P~~~~~~~~~I~gLdg~KMSKS~~n~I~L~D------s~~~I~kKI~~ 288 (398)
T PRK12283 246 EPQALLTEASKMPGLDGQKMSKSYGNTIGLRE------DPESVTKKIRT 288 (398)
T ss_pred CCcccccCCCcccCCCCCcCCCCCCCeeeCcC------CHHHHHHHHHh
Confidence 4544432 34554 799999999999887654 34556655554
No 142
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=80.04 E-value=6.2 Score=41.33 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=32.5
Q ss_pred EEEEeecccchhHhHHHHHhhcCCC----C-ccCcceEEee-eeee-cCC-ccccccCCcccCchh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEE----N-WTLMKTISVT-EYLN-YEA-GKFSKSKGVGVFGND 369 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~----~-~~~~~~i~~h-g~l~-~~G-~KMSKS~GN~I~~~d 369 (625)
+..+|.||..+|..-- -+....+. + ...|..+..+ .+|. ++| .|||||.+|.|++.|
T Consensus 145 ~vpvG~DQ~~h~~laR-diA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 145 LVPVGDDQLPMIEQTR-EIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred EEEeccccHHHHHHHH-HHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 8889999987654311 11121221 1 1234444333 3442 576 799999999886654
No 143
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=79.62 E-value=23 Score=40.34 Aligned_cols=80 Identities=14% Similarity=0.129 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHH
Q 006917 410 LNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYL 489 (625)
Q Consensus 410 ~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~ 489 (625)
...+-..++|+..++.+... ...+.+.. ..-..+.++.|...+..+...+.+++..-++..++..+.+|..-...||
T Consensus 577 ~~~l~~a~kRv~nIl~k~~~-~~~~~v~~--~Lf~~~~E~~L~~a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FF 653 (691)
T COG0751 577 AKALAAANKRVSNILAKAEK-KLSGTVDP--SLFEEDAEKALFEALQALKPKVAEALAEKDYQDALAALAELRPPIDEFF 653 (691)
T ss_pred hHHHHHHHHHHHHHHHhccc-ccCCccCh--HHhcCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHh
Confidence 44555778999999987321 11122211 1234567889999999999999999999999999999999999899999
Q ss_pred Hhc
Q 006917 490 QES 492 (625)
Q Consensus 490 ~~~ 492 (625)
+..
T Consensus 654 d~V 656 (691)
T COG0751 654 DNV 656 (691)
T ss_pred cCc
Confidence 885
No 144
>PLN02486 aminoacyl-tRNA ligase
Probab=79.35 E-value=1.3 Score=47.20 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=37.1
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCC--ccccccCCc-ccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEA--GKFSKSKGV-GVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G--~KMSKS~GN-~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+--+|.|+..++.+- --+....+. ..| .+++|.++. +.| .|||||.+| .|++.| +++.++=.+.+
T Consensus 222 lVPvG~DQd~~~~lt-Rdia~r~~~--~kp-~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 290 (383)
T PLN02486 222 LIPCAIDQDPYFRMT-RDVAPRLGY--YKP-ALIESRFFPALQGESGKMSASDPNSAIYVTD------TPKEIKNKINK 290 (383)
T ss_pred eeecccchHHHHHHH-HHHHHHhCC--CCc-ceeccccccCCCCCCCcCcCcCCCCeeeccC------CHHHHHHHHhc
Confidence 444699987655432 222233332 233 344455553 666 699999987 687765 34555555554
No 145
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=78.49 E-value=29 Score=40.03 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 006917 408 ELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNA 487 (625)
Q Consensus 408 ~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~ 487 (625)
.-...+...++|+..++.+..+ ...+.+ .......+.++.|...+..+...+...+..-++..++..+..|....+.
T Consensus 576 ~~~~~l~~a~kRv~NIl~k~~~-~~~~~v--~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~ 652 (691)
T TIGR00211 576 PKAEALAAANKRVANILKKGNP-VLSSEI--QANLFKEPKEKALFEAVLAIKMNAQESFESGDYETALEALAELRAPVDE 652 (691)
T ss_pred hhHHHHHHHHHHHHHHHhcccc-cccCcc--ChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhhhHHHH
Confidence 4456777888999999887321 011111 1113345678899999988878888888777999999999999999999
Q ss_pred HHHhc
Q 006917 488 YLQES 492 (625)
Q Consensus 488 y~~~~ 492 (625)
||+..
T Consensus 653 FFD~V 657 (691)
T TIGR00211 653 FFDSV 657 (691)
T ss_pred HhCCC
Confidence 99986
No 146
>PRK04023 DNA polymerase II large subunit; Validated
Probab=77.93 E-value=4.1 Score=47.67 Aligned_cols=77 Identities=18% Similarity=0.423 Sum_probs=51.7
Q ss_pred CCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeee
Q 006917 137 NNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLE 216 (625)
Q Consensus 137 ~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~ 216 (625)
+|.+. -.....+|++|+... ..-.||. ||........|..||....+ ..|..||.++. .....-++
T Consensus 617 ~g~~e-VEVg~RfCpsCG~~t----~~frCP~--CG~~Te~i~fCP~CG~~~~~-----y~CPKCG~El~--~~s~~~i~ 682 (1121)
T PRK04023 617 KGTIE-VEIGRRKCPSCGKET----FYRRCPF--CGTHTEPVYRCPRCGIEVEE-----DECEKCGREPT--PYSKRKID 682 (1121)
T ss_pred CCcee-ecccCccCCCCCCcC----CcccCCC--CCCCCCcceeCccccCcCCC-----CcCCCCCCCCC--ccceEEec
Confidence 56653 344557999999875 4468999 99876666789999986544 45999998875 33334456
Q ss_pred ccchHHHHHHH
Q 006917 217 LPLIKDKLEEY 227 (625)
Q Consensus 217 l~~~~~~l~~~ 227 (625)
+..+.....+-
T Consensus 683 l~~~~~~A~~~ 693 (1121)
T PRK04023 683 LKELYDRALEN 693 (1121)
T ss_pred HHHHHHHHHHH
Confidence 55544443333
No 147
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=74.40 E-value=6.3 Score=42.10 Aligned_cols=54 Identities=19% Similarity=0.042 Sum_probs=29.5
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeee-ecCCccccccCCcccCchh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYL-NYEAGKFSKSKGVGVFGND 369 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l-~~~G~KMSKS~GN~I~~~d 369 (625)
+.++|.|+.+ |-..=.-+....+.. . ...+.+-.+ ..+|.|||||.||.||.++
T Consensus 180 i~~gG~DQ~~-ni~~g~dLar~~~~~--~-~~~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 180 LQIGGSDQWG-NIRKGRDLIRRNLPS--L-GFGLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred eeEecchhHH-HHHHHHHHHHHhcCC--C-ceeeceeeecCCCCCCccCCCCCcccCCc
Confidence 8999999953 221111111111111 1 111222233 3689999999999998765
No 148
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=72.61 E-value=9.5 Score=35.10 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=30.0
Q ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHHHhHHHH
Q 006917 457 NHIDQYIEAM-EKVKLKQGLRIGMSISSEGNAYLQ 490 (625)
Q Consensus 457 ~~~~~v~~a~-~~~~~~~a~~~i~~l~~~~N~y~~ 490 (625)
.+...+.++| ++|+++.|+..|+++++.+|.+++
T Consensus 33 ~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~~~ 67 (156)
T cd07963 33 PFAERFIAAMDDDFNTPEALAVLFELAREINRLKK 67 (156)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 4457888999 699999999999999999999875
No 149
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=71.93 E-value=44 Score=40.00 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=68.2
Q ss_pred CCCchhHHHHHHhcCCC-CCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHH
Q 006917 374 NIPAEVWRYYLITNRPE-VSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLA 452 (625)
Q Consensus 374 ~~g~D~lR~~ll~~~~~-~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~ 452 (625)
++..|.++--+.. ... --++.-..+.+.+..+.+-...+...++|+..++.+.. +..+ .......+.|+.|.
T Consensus 857 G~~~dvI~AVl~~-~~~~~~~~~~r~~aL~~f~~~~~~~~l~~a~kRv~NIl~k~~----~~~v--d~~Lf~~~~E~~L~ 929 (1000)
T PRK14908 857 GFDKDEIAAVLPD-ACKNPAEADKTAQALQELKSTEIFAEIAAALNRLKRILASLS----FSVT--DASLLLEPAELNLK 929 (1000)
T ss_pred CCCHHHHHHHHcc-CCCCHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHhhcC----CCcc--ChhhcCCHHHHHHH
Confidence 4677777776653 110 01111112222222333445677888999999988731 1111 11133456788888
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhc
Q 006917 453 EKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQES 492 (625)
Q Consensus 453 ~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~ 492 (625)
..+..+...+... +-++..++..+..|....+.||+..
T Consensus 930 ~a~~~~~~~~~~~--~~dy~~al~~La~L~~~Id~FFD~V 967 (1000)
T PRK14908 930 QALDAFREELTEL--PIDLKDYVAAAAELPQAVNTFFDEV 967 (1000)
T ss_pred HHHHHHHHHHHHh--hhhHHHHHHHHHhhhhHHHHHhCCC
Confidence 8888776666555 4588999999999999999999986
No 150
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=67.38 E-value=4.9 Score=46.02 Aligned_cols=76 Identities=11% Similarity=0.078 Sum_probs=40.1
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHH-HHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006917 26 NILITSALPYVNNVPHLGNIIGCVLSADVFARY-CRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAV 104 (625)
Q Consensus 26 ~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~-~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 104 (625)
++.|.+++ -|+|.+||||. ++ + .+..+ +...|++|.+..+ |-|..- ..+.|.+..++.. ....+.++
T Consensus 32 ~~rv~sGi-~PTG~lHLGng---~~-~-aik~~~~~q~g~~~~~lIA-D~HAlt----~~~~~~~l~~i~~-~~~~~~~~ 99 (682)
T PTZ00348 32 LIRCYDGF-EPSGRMHIAQG---IF-K-AVNVNKCTQAGCEFVFWVA-DWFALM----NDKVGGELEKIRI-VGRYLIEV 99 (682)
T ss_pred CCEEEEee-CCCCcCeeccH---HH-H-HHHHHHHHhCCCeEEEEEc-chhhhc----CCCCCCCHHHHHH-HHHHHHHH
Confidence 44555665 78899999993 23 2 22221 2356998766532 222110 1112223333322 22346668
Q ss_pred HhhcCcccc
Q 006917 105 YNWFNISFD 113 (625)
Q Consensus 105 ~~~lgi~~D 113 (625)
+.++|++.+
T Consensus 100 ~lA~GlDpe 108 (682)
T PTZ00348 100 WKAAGMDMD 108 (682)
T ss_pred HHHcCCCcc
Confidence 888999887
No 151
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=63.36 E-value=17 Score=32.91 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=48.7
Q ss_pred chhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCCh
Q 006917 42 LGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTP 121 (625)
Q Consensus 42 iGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~ 121 (625)
=||-++ +.+++|.++..|++|.+..... +|.|+++.- +.++-.-.+| ...+-
T Consensus 23 DgHd~g----akvia~~l~d~GfeVi~~g~~~---------------tp~e~v~aA---~~~dv~vIgv------Ssl~g 74 (143)
T COG2185 23 DGHDRG----AKVIARALADAGFEVINLGLFQ---------------TPEEAVRAA---VEEDVDVIGV------SSLDG 74 (143)
T ss_pred cccccc----hHHHHHHHHhCCceEEecCCcC---------------CHHHHHHHH---HhcCCCEEEE------Eeccc
Confidence 388876 5889999999999998876554 344444332 2333333444 23456
Q ss_pred hHHHHHHHHHHHHHHCCC
Q 006917 122 QQTEICQAIFKKLLENNW 139 (625)
Q Consensus 122 ~~~~~v~~~~~~L~~~G~ 139 (625)
.|...+..+.+.|.++|.
T Consensus 75 ~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 75 GHLTLVPGLVEALREAGV 92 (143)
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 899999999999999886
No 152
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=62.45 E-value=36 Score=39.23 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=30.6
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceE-Eeeeeee-cC-C-ccccccC-CcccCchh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTI-SVTEYLN-YE-A-GKFSKSK-GVGVFGND 369 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i-~~hg~l~-~~-G-~KMSKS~-GN~I~~~d 369 (625)
+..+|.|+..+|.+- --+....|. .++.+ ..|.++. ++ | .|||||. +|.|.+.|
T Consensus 178 ivpvG~DQ~qh~eLa-Rdia~~~g~---~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 178 ICQLGLDQRKVNMLA-REYCDLIGR---KLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred EEEeCccHHHHHHHH-HHHHHHhCC---CCCceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 677899998766432 112222332 12223 3344443 54 4 5999999 68886554
No 153
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=56.76 E-value=7.8 Score=23.25 Aligned_cols=8 Identities=38% Similarity=1.161 Sum_probs=3.9
Q ss_pred ccccccCC
Q 006917 179 DQCEKCGK 186 (625)
Q Consensus 179 ~~ce~cg~ 186 (625)
..|..||.
T Consensus 14 ~fC~~CG~ 21 (23)
T PF13240_consen 14 KFCPNCGT 21 (23)
T ss_pred cchhhhCC
Confidence 34555554
No 154
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=53.09 E-value=12 Score=26.59 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=21.6
Q ss_pred cccccCCCCCCCccCCCccccCCCccEEEecc
Q 006917 180 QCEKCGKLLNPTELKDPRCKVCQATPKIRDTD 211 (625)
Q Consensus 180 ~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~ 211 (625)
.|..||..++......-+|..||..+..+...
T Consensus 4 ~C~~Cg~~~~~~~~~~irC~~CG~rIlyK~R~ 35 (44)
T smart00659 4 ICGECGRENEIKSKDVVRCRECGYRILYKKRT 35 (44)
T ss_pred ECCCCCCEeecCCCCceECCCCCceEEEEeCC
Confidence 36667776655544456888899998876543
No 155
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=51.24 E-value=29 Score=28.12 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=24.6
Q ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Q 006917 457 NHIDQYIEAM-EKVKLKQGLRIGMSISSEG 485 (625)
Q Consensus 457 ~~~~~v~~a~-~~~~~~~a~~~i~~l~~~~ 485 (625)
.+.+++.++| ++|+++.|+..|+++++..
T Consensus 28 ~~~~~F~~AL~DDLNTp~Ala~L~~l~k~i 57 (81)
T cd07955 28 ALVARLREALADDLDTPKALAALDAWAREA 57 (81)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 3457888899 7999999999999999764
No 156
>PF12773 DZR: Double zinc ribbon
Probab=50.28 E-value=16 Score=26.26 Aligned_cols=35 Identities=26% Similarity=0.620 Sum_probs=18.9
Q ss_pred cccC-CCCCccccccCCCCCCCccCCCccccCCCcc
Q 006917 171 CNYD-SARGDQCEKCGKLLNPTELKDPRCKVCQATP 205 (625)
Q Consensus 171 c~~~-~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~ 205 (625)
|+.. +.....|..||..+...+.....|..||..+
T Consensus 4 Cg~~~~~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~ 39 (50)
T PF12773_consen 4 CGTPNPDDAKFCPHCGTPLPPPDQSKKICPNCGAEN 39 (50)
T ss_pred cCCcCCccccCChhhcCChhhccCCCCCCcCCcCCC
Confidence 4443 2234567777776663333345666666653
No 157
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=49.66 E-value=11 Score=23.18 Aligned_cols=6 Identities=50% Similarity=1.514 Sum_probs=2.6
Q ss_pred cccccC
Q 006917 180 QCEKCG 185 (625)
Q Consensus 180 ~ce~cg 185 (625)
.|..||
T Consensus 18 fC~~CG 23 (26)
T PF13248_consen 18 FCPNCG 23 (26)
T ss_pred cChhhC
Confidence 344444
No 158
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=49.35 E-value=11 Score=27.20 Aligned_cols=32 Identities=22% Similarity=0.676 Sum_probs=22.0
Q ss_pred ccccccCCCCC-CCccCCCccccCCCccEEEec
Q 006917 179 DQCEKCGKLLN-PTELKDPRCKVCQATPKIRDT 210 (625)
Q Consensus 179 ~~ce~cg~~~~-~~~l~~~~~~~~g~~~~~~~~ 210 (625)
..|..||+.++ ......-.|..||+.+.++..
T Consensus 7 Y~C~~Cg~~~~~~~~~~~irCp~Cg~rIl~K~R 39 (49)
T COG1996 7 YKCARCGREVELDQETRGIRCPYCGSRILVKER 39 (49)
T ss_pred EEhhhcCCeeehhhccCceeCCCCCcEEEEecc
Confidence 35777888775 334455688889998876544
No 159
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=48.82 E-value=10 Score=27.02 Aligned_cols=28 Identities=25% Similarity=0.655 Sum_probs=15.4
Q ss_pred ccccCCCCCCCccC-CCccccCCCccEEE
Q 006917 181 CEKCGKLLNPTELK-DPRCKVCQATPKIR 208 (625)
Q Consensus 181 ce~cg~~~~~~~l~-~~~~~~~g~~~~~~ 208 (625)
|.+||..+.-.+.. ...|..||+++...
T Consensus 6 C~~CG~~~~~~~~~~~~~Cp~CG~~~~~~ 34 (46)
T PRK00398 6 CARCGREVELDEYGTGVRCPYCGYRILFK 34 (46)
T ss_pred CCCCCCEEEECCCCCceECCCCCCeEEEc
Confidence 55556554322222 56777788877643
No 160
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=47.01 E-value=6.4 Score=45.34 Aligned_cols=63 Identities=19% Similarity=0.415 Sum_probs=0.0
Q ss_pred eeeeCCCCccccccccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHH
Q 006917 147 QLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKD 222 (625)
Q Consensus 147 ~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~ 222 (625)
...|++|+..-. ..+||. ||....--..|..||..+++ ..|.+||..+.. ..+.-+++..+-.
T Consensus 655 ~r~Cp~Cg~~t~----~~~Cp~--CG~~T~~~~~Cp~C~~~~~~-----~~C~~C~~~~~~--~~~~~i~l~~~~~ 717 (900)
T PF03833_consen 655 RRRCPKCGKETF----YNRCPE--CGSHTEPVYVCPDCGIEVEE-----DECPKCGRETTS--YSKQKIDLKEEYD 717 (900)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCcccCCcch----hhcCcc--cCCccccceeccccccccCc-----cccccccccCcc--cceeecCHHHHHH
Confidence 356777764321 236776 77655555667777775443 378888877543 2333345544333
No 161
>PLN02886 aminoacyl-tRNA ligase
Probab=46.34 E-value=20 Score=38.33 Aligned_cols=17 Identities=29% Similarity=0.184 Sum_probs=12.1
Q ss_pred CC-ccccccCC---cccCchh
Q 006917 353 EA-GKFSKSKG---VGVFGND 369 (625)
Q Consensus 353 ~G-~KMSKS~G---N~I~~~d 369 (625)
+| .|||||.. |.|.+.|
T Consensus 247 ~g~~KMSKS~p~~~s~I~L~D 267 (389)
T PLN02886 247 DGTSKMSKSAPSDQSRINLLD 267 (389)
T ss_pred CCCCcCCCCCCCCCCeEEecC
Confidence 44 59999985 5776554
No 162
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.70 E-value=26 Score=35.24 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=30.6
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeec-cCcc
Q 006917 23 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYIC-GTDE 74 (625)
Q Consensus 23 ~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~-g~D~ 74 (625)
.+++||+.|+-=--++.+||||+-- ++ +..|+... ++|-+|. =|||
T Consensus 82 q~kpFyLYTGRGpSS~smHlGHliP-Fi----ftKwlQe~-F~vpLVIqlTDD 128 (397)
T KOG2145|consen 82 QGKPFYLYTGRGPSSESMHLGHLIP-FI----FTKWLQDV-FDVPLVIQLTDD 128 (397)
T ss_pred cCCceEEEeCCCCCccccccccchh-HH----HHHHHHHH-hCCceEEEeccc
Confidence 4678988887655688999999873 44 56666543 4565544 4554
No 163
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=44.30 E-value=40 Score=29.20 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=25.2
Q ss_pred CccccCCCccEEEeccceeeeccc-hHHHHHHHHHh
Q 006917 196 PRCKVCQATPKIRDTDHLFLELPL-IKDKLEEYINK 230 (625)
Q Consensus 196 ~~~~~~g~~~~~~~~~~~f~~l~~-~~~~l~~~~~~ 230 (625)
.+|..||+.++=.-+-.||..|+. -.+.+..|+..
T Consensus 13 l~C~~C~t~i~G~F~l~~~~~L~~E~~~Fi~~Fi~~ 48 (113)
T PF09862_consen 13 LKCPSCGTEIEGEFELPWFARLSPEQLEFIKLFIKN 48 (113)
T ss_pred EEcCCCCCEEEeeeccchhhcCCHHHHHHHHHHHHh
Confidence 578889999988888899999865 33344455443
No 164
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=43.46 E-value=15 Score=34.35 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=18.2
Q ss_pred HCCCEEEeeeeeeeeCCCCcccc
Q 006917 136 ENNWLSEYTTQQLYCDTCKRFLA 158 (625)
Q Consensus 136 ~~G~iy~~~~~~~y~~~~~~~l~ 158 (625)
+++-.+.+..+.|||..|+-.+.
T Consensus 3 kk~~~~~gk~~iyWCe~cNlPl~ 25 (202)
T COG5270 3 KKMPVVLGKFPIYWCEKCNLPLL 25 (202)
T ss_pred cccceeecccceeehhhCCCccc
Confidence 45667888889999999887655
No 165
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.81 E-value=24 Score=37.07 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=29.7
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeecc--CcccchHH
Q 006917 26 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICG--TDEYGTAT 79 (625)
Q Consensus 26 ~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g--~D~~G~~i 79 (625)
+.+|.++.--.-.++|+||+.. .+ ++.+++ ..|+++.-+.| |--.|+|-
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~-lm---~L~hfq-r~Gh~~ialIGgATa~vGDPS 113 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLA-LM---VLIHFQ-RAGHRPIALIGGATASVGDPS 113 (467)
T ss_pred CceEEecCCCcHHhhhhcchHH-HH---HHHHHH-HcCCCceEEeccccccccCCC
Confidence 3455565543446899999984 33 455655 45888776654 33345553
No 166
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.63 E-value=77 Score=32.08 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=50.3
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHC--CCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006917 29 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLR--GYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYN 106 (625)
Q Consensus 29 i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~--G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 106 (625)
|.+++ -|+|.+|||+-.++ | -...+.+... |-.|+| +=.|-|-.- ...+|.++- ++.-.+...+-
T Consensus 16 vfSGI-QPTG~~HLGNYLGa-i--~~Wv~LQ~~~d~~~~~~f-~vvDlHaIT-------vp~dp~~lr-q~~~dm~A~lL 82 (347)
T KOG2713|consen 16 VFSGI-QPTGIPHLGNYLGA-I--KPWVQLQNEYDKNILVLF-SVVDLHAIT-------VPQDPAELR-QATHDMAASLL 82 (347)
T ss_pred eEecc-CCCCCchhhhhhhh-h--hHHHHHHHHhcCCceEEE-EEeeceeec-------CCCChHHHH-HHHHHHHHHHH
Confidence 34665 78899999999986 4 3344444333 443333 334555322 234455333 33334556667
Q ss_pred hcCcccc---cccCCCChhHHHHHH
Q 006917 107 WFNISFD---EFGRTSTPQQTEICQ 128 (625)
Q Consensus 107 ~lgi~~D---~~~~t~~~~~~~~v~ 128 (625)
+-||++. .|+...-++|.+..+
T Consensus 83 AcGIdp~Ks~lF~QS~Vpqh~el~W 107 (347)
T KOG2713|consen 83 ACGIDPEKSSLFVQSDVPQHAELSW 107 (347)
T ss_pred HhccCcccceeeeeccchHHHHHHH
Confidence 7799876 577667777766543
No 167
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=41.92 E-value=23 Score=40.59 Aligned_cols=34 Identities=26% Similarity=0.822 Sum_probs=19.3
Q ss_pred eeCCCCccccccccccCCCCCccccCCCC-CccccccCCCC
Q 006917 149 YCDTCKRFLADRLVEGSCPTLGCNYDSAR-GDQCEKCGKLL 188 (625)
Q Consensus 149 y~~~~~~~l~~~~v~g~cp~~~c~~~~~~-g~~ce~cg~~~ 188 (625)
||+.|+.-+.. ..||. ||.+... ...|.+||..+
T Consensus 17 FC~~CG~~l~~----~~Cp~--CG~~~~~~~~fC~~CG~~~ 51 (645)
T PRK14559 17 FCQKCGTSLTH----KPCPQ--CGTEVPVDEAHCPNCGAET 51 (645)
T ss_pred cccccCCCCCC----CcCCC--CCCCCCcccccccccCCcc
Confidence 66666665532 35666 7665332 34577777654
No 168
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=41.51 E-value=12 Score=35.29 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHCCCEE
Q 006917 123 QTEICQAIFKKLLENNWLS 141 (625)
Q Consensus 123 ~~~~v~~~~~~L~~~G~iy 141 (625)
....|++++.+|.+.|++.
T Consensus 49 ~~~~VRk~L~~L~e~gLv~ 67 (178)
T PRK06266 49 KLNTVRKILYKLYDARLAD 67 (178)
T ss_pred CHHHHHHHHHHHHHCCCeE
Confidence 4467899999999999987
No 169
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=41.21 E-value=21 Score=40.82 Aligned_cols=50 Identities=20% Similarity=0.530 Sum_probs=29.1
Q ss_pred eeCCCCccccccccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccE
Q 006917 149 YCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPK 206 (625)
Q Consensus 149 y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~ 206 (625)
.|+.|+...++.- ..||. ||..-. ...|..||..+.+. ...|..||.++-
T Consensus 3 ~Cp~Cg~~n~~~a--kFC~~--CG~~l~-~~~Cp~CG~~~~~~---~~fC~~CG~~~~ 52 (645)
T PRK14559 3 ICPQCQFENPNNN--RFCQK--CGTSLT-HKPCPQCGTEVPVD---EAHCPNCGAETG 52 (645)
T ss_pred cCCCCCCcCCCCC--ccccc--cCCCCC-CCcCCCCCCCCCcc---cccccccCCccc
Confidence 4677766554321 24666 766422 13577777765443 357888888763
No 170
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=38.40 E-value=26 Score=22.93 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=15.3
Q ss_pred ccccCCCCCCCccCCCccccCCCccEEE
Q 006917 181 CEKCGKLLNPTELKDPRCKVCQATPKIR 208 (625)
Q Consensus 181 ce~cg~~~~~~~l~~~~~~~~g~~~~~~ 208 (625)
|..||..++-.....-+|..||..+..+
T Consensus 3 C~~Cg~~~~~~~~~~irC~~CG~RIlyK 30 (32)
T PF03604_consen 3 CGECGAEVELKPGDPIRCPECGHRILYK 30 (32)
T ss_dssp ESSSSSSE-BSTSSTSSBSSSS-SEEBE
T ss_pred CCcCCCeeEcCCCCcEECCcCCCeEEEe
Confidence 5566665543222334788888887644
No 171
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=38.35 E-value=23 Score=24.77 Aligned_cols=15 Identities=40% Similarity=1.032 Sum_probs=7.4
Q ss_pred CCCc-cccccCCCCCC
Q 006917 176 ARGD-QCEKCGKLLNP 190 (625)
Q Consensus 176 ~~g~-~ce~cg~~~~~ 190 (625)
+.|+ .|..||..++.
T Consensus 16 ~~g~~vC~~CG~Vl~e 31 (43)
T PF08271_consen 16 ERGELVCPNCGLVLEE 31 (43)
T ss_dssp TTTEEEETTT-BBEE-
T ss_pred CCCeEECCCCCCEeec
Confidence 3444 57777765543
No 172
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=37.66 E-value=13 Score=37.33 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=39.2
Q ss_pred CCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhhcCcccc
Q 006917 35 YVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENC-TTQQICDKYYAIHKAVYNWFNISFD 113 (625)
Q Consensus 35 y~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~-~~~~~~~~~~~~~~~~~~~lgi~~D 113 (625)
-|+|.||+|-..-..=.+|++ ..|.+|..... |-|+.---.+| +. ..+..+..|...++..+..+|+..+
T Consensus 42 aptGrpHiay~vpm~kiadfl-----kAGC~VtIl~A-D~hA~LdNmka---p~e~~~~rv~yYe~~Ik~~l~~~nv~lE 112 (360)
T KOG2144|consen 42 APTGRPHIAYFVPMMKIADFL-----KAGCEVTILFA-DLHAFLDNMKA---PDELVIRRVGYYEKEIKAALGSINVPLE 112 (360)
T ss_pred CCCCCcceeeeeehhHHHHHH-----hcCCeEEEEeh-HHHHHHhcccc---hHHHHHHHHHHHHHHHHHHHhhcCCcHH
Confidence 467999999865433335543 34988876542 33322110010 10 1123456677788888888888665
No 173
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=35.41 E-value=25 Score=42.62 Aligned_cols=36 Identities=28% Similarity=0.727 Sum_probs=27.6
Q ss_pred CCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEE
Q 006917 165 SCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKI 207 (625)
Q Consensus 165 ~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~ 207 (625)
.||. ||... +...|..||....+ ...|..||..+..
T Consensus 669 kCPk--CG~~t-~~~fCP~CGs~te~----vy~CPsCGaev~~ 704 (1337)
T PRK14714 669 RCPS--CGTET-YENRCPDCGTHTEP----VYVCPDCGAEVPP 704 (1337)
T ss_pred ECCC--CCCcc-ccccCcccCCcCCC----ceeCccCCCccCC
Confidence 6998 99864 34599999998654 2389999997653
No 174
>PRK05580 primosome assembly protein PriA; Validated
Probab=33.71 E-value=2.7e+02 Score=32.43 Aligned_cols=135 Identities=21% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCEE-----EeeeeeeeeCCCCccccccccccCCCCCccccC-----CCCCccccccCCCCCCCcc
Q 006917 124 TEICQAIFKKLLENNWLS-----EYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYD-----SARGDQCEKCGKLLNPTEL 193 (625)
Q Consensus 124 ~~~v~~~~~~L~~~G~iy-----~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~-----~~~g~~ce~cg~~~~~~~l 193 (625)
......+-+.|.+...+. ++..+..+|..|+.... ||+ |+.. ....-.|..||.......
T Consensus 353 ~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~-------C~~--C~~~l~~h~~~~~l~Ch~Cg~~~~~~~- 422 (679)
T PRK05580 353 PPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAE-------CPH--CDASLTLHRFQRRLRCHHCGYQEPIPK- 422 (679)
T ss_pred HHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccC-------CCC--CCCceeEECCCCeEECCCCcCCCCCCC-
Q ss_pred CCCccccCCCccEEEeccceeeeccchHHHHHHHHHhC-CCCCCCC--------hhHHHHHHHHHhcCCCCcccccc-cC
Q 006917 194 KDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKM-SVSGSWS--------QNAIQGTYAWLKDGLKPRCITRD-LK 263 (625)
Q Consensus 194 ~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~-~~~~~~~--------~~~~~~~~~~l~~~l~d~~IsR~-~~ 263 (625)
.|..||+.. +.....-.+++.+.+++. +..+... +.....+.+.+.+|-.+.-|+-+ ..
T Consensus 423 ---~Cp~Cg~~~--------l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~ia 491 (679)
T PRK05580 423 ---ACPECGSTD--------LVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLA 491 (679)
T ss_pred ---CCCCCcCCe--------eEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhc
Q ss_pred CCcccCCCCCCCceeeeeccc
Q 006917 264 WGVPVPHEKFKDKVFYVWFDA 284 (625)
Q Consensus 264 WGi~vP~~~~~~~viyvWfDa 284 (625)
-|+.+| +=++-+++|+
T Consensus 492 kG~d~p-----~v~lV~il~a 507 (679)
T PRK05580 492 KGHDFP-----NVTLVGVLDA 507 (679)
T ss_pred cCCCCC-----CcCEEEEEcC
No 175
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.42 E-value=24 Score=30.65 Aligned_cols=26 Identities=31% Similarity=0.732 Sum_probs=17.8
Q ss_pred cccCCCCCccccCC------CCCccccccCCCCC
Q 006917 162 VEGSCPTLGCNYDS------ARGDQCEKCGKLLN 189 (625)
Q Consensus 162 v~g~cp~~~c~~~~------~~g~~ce~cg~~~~ 189 (625)
+.|.||. ||... .-.+.|+.||..+.
T Consensus 20 l~grCP~--CGeGrLF~gFLK~~p~C~aCG~dyg 51 (126)
T COG5349 20 LRGRCPR--CGEGRLFRGFLKVVPACEACGLDYG 51 (126)
T ss_pred hcCCCCC--CCCchhhhhhcccCchhhhcccccc
Confidence 4579999 98642 12567888887653
No 176
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=31.78 E-value=19 Score=24.32 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=9.3
Q ss_pred CCCccccCCCccEEE
Q 006917 194 KDPRCKVCQATPKIR 208 (625)
Q Consensus 194 ~~~~~~~~g~~~~~~ 208 (625)
...+|-.||.+++.|
T Consensus 20 ~~~~Cd~cg~~L~qR 34 (36)
T PF05191_consen 20 VEGVCDNCGGELVQR 34 (36)
T ss_dssp STTBCTTTTEBEBEE
T ss_pred CCCccCCCCCeeEeC
Confidence 345677777766554
No 177
>cd01675 RNR_III Class III ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w
Probab=30.86 E-value=54 Score=37.00 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHCCCEE
Q 006917 124 TEICQAIFKKLLENNWLS 141 (625)
Q Consensus 124 ~~~v~~~~~~L~~~G~iy 141 (625)
.+.+.++++...++|.+|
T Consensus 494 ~~al~~lv~~a~~~~~~y 511 (555)
T cd01675 494 PEALEALVKKAAKRGVIY 511 (555)
T ss_pred HHHHHHHHHHHHHcCCce
Confidence 355555555555555555
No 178
>PRK05978 hypothetical protein; Provisional
Probab=30.80 E-value=34 Score=31.19 Aligned_cols=10 Identities=40% Similarity=1.192 Sum_probs=7.5
Q ss_pred ccCCCCCccccC
Q 006917 163 EGSCPTLGCNYD 174 (625)
Q Consensus 163 ~g~cp~~~c~~~ 174 (625)
.|+||. ||..
T Consensus 33 ~grCP~--CG~G 42 (148)
T PRK05978 33 RGRCPA--CGEG 42 (148)
T ss_pred cCcCCC--CCCC
Confidence 478998 8764
No 179
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=30.50 E-value=47 Score=38.58 Aligned_cols=50 Identities=22% Similarity=0.567 Sum_probs=0.0
Q ss_pred EeeeeeeeeCCCCccccccccccCCCCCccccC-----CCCCccccccCCCCCCCccCCCccccCCCc
Q 006917 142 EYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYD-----SARGDQCEKCGKLLNPTELKDPRCKVCQAT 204 (625)
Q Consensus 142 ~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~-----~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~ 204 (625)
++..+...|..|+... .||+ |... ....-.|-.||+.-..-. .|..||++
T Consensus 430 RGys~~l~C~~Cg~v~-------~Cp~--Cd~~lt~H~~~~~L~CH~Cg~~~~~p~----~Cp~Cgs~ 484 (730)
T COG1198 430 RGYAPLLLCRDCGYIA-------ECPN--CDSPLTLHKATGQLRCHYCGYQEPIPQ----SCPECGSE 484 (730)
T ss_pred CCccceeecccCCCcc-------cCCC--CCcceEEecCCCeeEeCCCCCCCCCCC----CCCCCCCC
No 180
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=29.52 E-value=38 Score=30.66 Aligned_cols=36 Identities=6% Similarity=-0.021 Sum_probs=19.2
Q ss_pred CCCcccchhhhhhhhHHHHHHHHHHH---CCCceeeeccCcc
Q 006917 36 VNNVPHLGNIIGCVLSADVFARYCRL---RGYNALYICGTDE 74 (625)
Q Consensus 36 ~ng~lHiGH~~~~~i~~Di~~R~~r~---~G~~V~~~~g~D~ 74 (625)
=-||+||||++... -.+..-++. .|..|.+-++.|.
T Consensus 40 DFGPlnL~~lyrfc---~~l~~~L~~~~~~~k~iv~yts~d~ 78 (141)
T PF14671_consen 40 DFGPLNLAQLYRFC---CKLNKKLKSPELKKKKIVHYTSSDP 78 (141)
T ss_dssp ------HHHHHHHH---HHHHHHHH-GGGTTSEEEEEE-S-H
T ss_pred cCCCccHHHHHHHH---HHHHHHHcCHHhcCCeEEEECCCCh
Confidence 45999999999743 334444444 6899999999876
No 181
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.69 E-value=50 Score=34.83 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=17.5
Q ss_pred ee-cCCccccccCCcccCchh
Q 006917 350 LN-YEAGKFSKSKGVGVFGND 369 (625)
Q Consensus 350 l~-~~G~KMSKS~GN~I~~~d 369 (625)
|+ ..|.|+-||-||+||++-
T Consensus 266 lTsstG~KlGKSaGnAvWLdp 286 (467)
T KOG2623|consen 266 LTSSTGAKLGKSAGNAVWLDP 286 (467)
T ss_pred EecCcchhhccCCCceEEecC
Confidence 44 699999999999999875
No 182
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=28.63 E-value=51 Score=28.77 Aligned_cols=8 Identities=38% Similarity=1.107 Sum_probs=3.9
Q ss_pred eeeeCCCC
Q 006917 147 QLYCDTCK 154 (625)
Q Consensus 147 ~~y~~~~~ 154 (625)
..+|..|+
T Consensus 71 ~~~C~~Cg 78 (117)
T PRK00564 71 ELECKDCS 78 (117)
T ss_pred EEEhhhCC
Confidence 34555544
No 183
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=28.53 E-value=40 Score=27.70 Aligned_cols=33 Identities=24% Similarity=0.681 Sum_probs=19.2
Q ss_pred cccccCCCCCCCccCC-CccccCCCccEEEecccee
Q 006917 180 QCEKCGKLLNPTELKD-PRCKVCQATPKIRDTDHLF 214 (625)
Q Consensus 180 ~ce~cg~~~~~~~l~~-~~~~~~g~~~~~~~~~~~f 214 (625)
.|-.||-...+..+.. .+|.+|++. +.++..++
T Consensus 60 ~CkkCGfef~~~~ik~pSRCP~CKSE--~Ie~prF~ 93 (97)
T COG3357 60 RCKKCGFEFRDDKIKKPSRCPKCKSE--WIEEPRFV 93 (97)
T ss_pred hhcccCccccccccCCcccCCcchhh--cccCCcee
Confidence 4566666666655543 478888764 33444444
No 184
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=27.91 E-value=67 Score=33.27 Aligned_cols=37 Identities=11% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCCCCccCC---ChHHHHHHHHHhcCchhhHHHHHHHHHH
Q 006917 573 MSSPLFKEL---KDEDVRFFREKFAGSQADRAVQAEAEAK 609 (625)
Q Consensus 573 ~~~~Lf~ki---~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 609 (625)
.+.+||... .+++++.+.+....+..-|+++|+++++
T Consensus 305 ~GkVlyH~hv~Kt~eEi~~l~~~~ekk~~lKeqRkkeQ~e 344 (405)
T KOG2963|consen 305 EGKVLYHEHVQKTEEEIKALRKRHEKKRRLKEQRKKEQEE 344 (405)
T ss_pred ccceEEeehhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788765 4566776665555555555555555555
No 185
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.70 E-value=2.3e+02 Score=25.24 Aligned_cols=66 Identities=15% Similarity=0.006 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHH
Q 006917 50 LSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQA 129 (625)
Q Consensus 50 i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~ 129 (625)
+.+++++++++..|++|....+.. +++++++... ++.-+-.+ ....+..|...+..
T Consensus 17 ~g~~iv~~~l~~~GfeVi~lg~~~---------------s~e~~v~aa~---e~~adii~------iSsl~~~~~~~~~~ 72 (132)
T TIGR00640 17 RGAKVIATAYADLGFDVDVGPLFQ---------------TPEEIARQAV---EADVHVVG------VSSLAGGHLTLVPA 72 (132)
T ss_pred HHHHHHHHHHHhCCcEEEECCCCC---------------CHHHHHHHHH---HcCCCEEE------EcCchhhhHHHHHH
Confidence 347999999999999998765443 2333333321 11112222 23445578888999
Q ss_pred HHHHHHHCCC
Q 006917 130 IFKKLLENNW 139 (625)
Q Consensus 130 ~~~~L~~~G~ 139 (625)
+.+.|.++|.
T Consensus 73 ~~~~L~~~g~ 82 (132)
T TIGR00640 73 LRKELDKLGR 82 (132)
T ss_pred HHHHHHhcCC
Confidence 9999988875
No 186
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=27.12 E-value=41 Score=22.01 Aligned_cols=24 Identities=33% Similarity=0.693 Sum_probs=13.7
Q ss_pred cccccCCCCCCCccCCCccccCCCc
Q 006917 180 QCEKCGKLLNPTELKDPRCKVCQAT 204 (625)
Q Consensus 180 ~ce~cg~~~~~~~l~~~~~~~~g~~ 204 (625)
.|..||..+++.+ ....|..||.+
T Consensus 3 ~C~~CGy~y~~~~-~~~~CP~Cg~~ 26 (33)
T cd00350 3 VCPVCGYIYDGEE-APWVCPVCGAP 26 (33)
T ss_pred ECCCCCCEECCCc-CCCcCcCCCCc
Confidence 3555665555433 44577777765
No 187
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=26.41 E-value=56 Score=24.65 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=16.9
Q ss_pred CCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcc
Q 006917 37 NNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDE 74 (625)
Q Consensus 37 ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~ 74 (625)
-+++|.||.+ ++ .- .+..+..+....++|.
T Consensus 8 Fdp~H~GH~~--~l-~~-----a~~~~~~~vv~i~~~~ 37 (66)
T TIGR00125 8 FDPFHLGHLD--LL-ER-----AKELFDELIVGVGSDQ 37 (66)
T ss_pred cCCCCHHHHH--HH-HH-----HHHhCCEEEEEECchH
Confidence 3789999986 34 11 1223336666655543
No 188
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=25.52 E-value=63 Score=24.17 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=29.2
Q ss_pred HHHHHHHHHHCCCceeeeccCc--ccc-hHHHHHHHHcCCCHHHHHHHHH
Q 006917 52 ADVFARYCRLRGYNALYICGTD--EYG-TATETKAMEENCTTQQICDKYY 98 (625)
Q Consensus 52 ~Di~~R~~r~~G~~V~~~~g~D--~~G-~~i~~~a~~~g~~~~~~~~~~~ 98 (625)
+|+.+.+-+. -+|+.-.|+| ++| .++..++++.|+++.++.....
T Consensus 6 geiv~~~p~~--a~vf~~~gIDfCCgG~~~L~eA~~~~~ld~~~vl~~L~ 53 (56)
T PF04405_consen 6 GEIVAEDPRA--ARVFRKYGIDFCCGGNRSLEEACEEKGLDPEEVLEELN 53 (56)
T ss_pred HHHHHHChHH--HHHHHHcCCcccCCCCchHHHHHHHcCCCHHHHHHHHH
Confidence 6666655443 2344444555 456 6788888999999998876654
No 189
>PRK13671 hypothetical protein; Provisional
Probab=24.86 E-value=1.8e+02 Score=30.00 Aligned_cols=79 Identities=15% Similarity=-0.002 Sum_probs=44.1
Q ss_pred CCCCCcccchhhhhhhhHHHHHHHHHHHC-CCceeeeccCcc--cchHHH-------HHHHHcCCC-----HHHH----H
Q 006917 34 PYVNNVPHLGNIIGCVLSADVFARYCRLR-GYNALYICGTDE--YGTATE-------TKAMEENCT-----TQQI----C 94 (625)
Q Consensus 34 Py~ng~lHiGH~~~~~i~~Di~~R~~r~~-G~~V~~~~g~D~--~G~~i~-------~~a~~~g~~-----~~~~----~ 94 (625)
-.-.+|+|.||++- + ..+. +.. ...|.+++.-+- -|.|.. ..|.+.|.+ |-.+ +
T Consensus 6 IaeFNP~H~GHl~~--~-~~a~----~~~~~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~~~G~DLViELP~~~a~~sA 78 (298)
T PRK13671 6 IAEYNPFHNGHIYQ--I-NYIK----NKFPNEKIIVILSGKYTQRGEIAVASFEKRKKIALKYGVDKVIKLPFEYATQAA 78 (298)
T ss_pred EeeeCCccHHHHHH--H-HHHH----HhcCCCEEEEEECcCCCCCCCCCCCCHHHHHHHHHHcCCCEEEeccHHHHhhch
Confidence 34568999999873 3 3332 233 345666553332 233222 223444653 4444 4
Q ss_pred HHHHHHHHHHHhhcCcccccccCCC
Q 006917 95 DKYYAIHKAVYNWFNISFDEFGRTS 119 (625)
Q Consensus 95 ~~~~~~~~~~~~~lgi~~D~~~~t~ 119 (625)
+.+...=..++..+||+.=.|...+
T Consensus 79 e~FA~gaV~lL~~lgvd~l~FGsE~ 103 (298)
T PRK13671 79 HIFAKGAIKKLNKEKIDKLIFGSES 103 (298)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCC
Confidence 5566666789999996555676654
No 190
>PRK12496 hypothetical protein; Provisional
Probab=24.44 E-value=47 Score=30.92 Aligned_cols=25 Identities=24% Similarity=0.595 Sum_probs=0.0
Q ss_pred cccccCCCCCCCccCCCccccCCCcc
Q 006917 180 QCEKCGKLLNPTELKDPRCKVCQATP 205 (625)
Q Consensus 180 ~ce~cg~~~~~~~l~~~~~~~~g~~~ 205 (625)
.|..||+.++... ....|..||+++
T Consensus 129 ~C~gC~~~~~~~~-~~~~C~~CG~~~ 153 (164)
T PRK12496 129 VCKGCKKKYPEDY-PDDVCEICGSPV 153 (164)
T ss_pred ECCCCCccccCCC-CCCcCCCCCChh
No 191
>PF07394 DUF1501: Protein of unknown function (DUF1501); InterPro: IPR010869 This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.
Probab=23.95 E-value=1.8e+02 Score=31.09 Aligned_cols=57 Identities=16% Similarity=0.035 Sum_probs=37.5
Q ss_pred HHHHHHHHHHCCCceeeec--cCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccc
Q 006917 52 ADVFARYCRLRGYNALYIC--GTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFD 113 (625)
Q Consensus 52 ~Di~~R~~r~~G~~V~~~~--g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~D 113 (625)
.=+++|-+...|-+|.+|. |||.|+.....-+... .-.+.-...|.++|+..|+.=+
T Consensus 234 ~~l~a~~~~~~g~~v~~V~~gGwDTH~~~~~~~~~ll-----~~L~~alaaf~~dL~~~g~~d~ 292 (392)
T PF07394_consen 234 QLLLARRLIEAGVRVVFVSLGGWDTHSNQGNRHARLL-----PELDQALAAFIQDLKERGLLDD 292 (392)
T ss_pred HHHHHHHHhhcCCEEEEECCCCccCccccHhHHHHHH-----HHHHHHHHHHHHHHHhcCCcCc
Confidence 4467777777798998887 9999996554443322 2334445667778888776433
No 192
>PRK14529 adenylate kinase; Provisional
Probab=23.81 E-value=2.2e+02 Score=27.93 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=36.7
Q ss_pred cCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCC
Q 006917 71 GTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENN 138 (625)
Q Consensus 71 g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G 138 (625)
+-++.|..+.....+-..-|.+++-............-|+-.|-|.||. ...+.++..|.+.|
T Consensus 41 ~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~iLDGfPRt~-----~Qa~~l~~~l~~~~ 103 (223)
T PRK14529 41 GGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWLLDGFPRNK-----VQAEKLWEALQKEG 103 (223)
T ss_pred CCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEEEeCCCCCH-----HHHHHHHHHHHhcC
Confidence 3455677776666555566777766654433332234566778888775 34445555565655
No 193
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=23.59 E-value=49 Score=35.53 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=7.9
Q ss_pred HHHHHHHHHCCCceee
Q 006917 53 DVFARYCRLRGYNALY 68 (625)
Q Consensus 53 Di~~R~~r~~G~~V~~ 68 (625)
--+|+|+ ..|..|..
T Consensus 32 ~gia~w~-~~g~~vev 46 (593)
T COG2401 32 SGIAQWF-IEGDEVEV 46 (593)
T ss_pred hhhHHhh-cCCCEEEE
Confidence 4456665 34665543
No 194
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=23.58 E-value=60 Score=33.65 Aligned_cols=27 Identities=33% Similarity=0.879 Sum_probs=15.5
Q ss_pred cccCCCCCcccc-----CCCCCc-cccccCCCCCC
Q 006917 162 VEGSCPTLGCNY-----DSARGD-QCEKCGKLLNP 190 (625)
Q Consensus 162 v~g~cp~~~c~~-----~~~~g~-~ce~cg~~~~~ 190 (625)
-...||. ||. +...|+ .|.+||..+..
T Consensus 10 ~~~~Cp~--Cg~~~iv~d~~~Ge~vC~~CG~Vl~e 42 (310)
T PRK00423 10 EKLVCPE--CGSDKLIYDYERGEIVCADCGLVIEE 42 (310)
T ss_pred cCCcCcC--CCCCCeeEECCCCeEeecccCCcccc
Confidence 3346777 765 223454 47777776544
No 195
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.50 E-value=1.2e+02 Score=33.86 Aligned_cols=51 Identities=24% Similarity=0.611 Sum_probs=31.6
Q ss_pred EeeeeeeeeCCCCccccccccccCCCCCccccC-----CCCCccccccCCCCCCCccCCCccccCCCcc
Q 006917 142 EYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYD-----SARGDQCEKCGKLLNPTELKDPRCKVCQATP 205 (625)
Q Consensus 142 ~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~-----~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~ 205 (625)
++..+..+|.+|+... .||+ |+.. ....-.|..||..... ...|..||+.-
T Consensus 208 rGya~~~~C~~Cg~~~-------~C~~--C~~~l~~h~~~~~l~Ch~Cg~~~~~----~~~Cp~C~s~~ 263 (505)
T TIGR00595 208 RGYSKNLLCRSCGYIL-------CCPN--CDVSLTYHKKEGKLRCHYCGYQEPI----PKTCPQCGSED 263 (505)
T ss_pred CcCCCeeEhhhCcCcc-------CCCC--CCCceEEecCCCeEEcCCCcCcCCC----CCCCCCCCCCe
Confidence 3445567888887664 5887 7642 1223458888864322 24788888763
No 196
>PRK09620 hypothetical protein; Provisional
Probab=23.12 E-value=1.3e+02 Score=29.57 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=36.5
Q ss_pred CCcEEEEcCCCC--CCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCc
Q 006917 24 KRNILITSALPY--VNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTD 73 (625)
Q Consensus 24 ~~~~~i~~~~Py--~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D 73 (625)
+++++||++|=. ....=.|++..+-++ +-.+++++..+|++|.++.|..
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfi-Gs~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTI-GRIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHH-HHHHHHHHHHCCCeEEEEeCCC
Confidence 356788776521 233447888777777 8999999999999999998753
No 197
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=22.21 E-value=62 Score=26.92 Aligned_cols=27 Identities=33% Similarity=0.704 Sum_probs=22.2
Q ss_pred ccccccCCCCCCCccC--------CCccccCCCcc
Q 006917 179 DQCEKCGKLLNPTELK--------DPRCKVCQATP 205 (625)
Q Consensus 179 ~~ce~cg~~~~~~~l~--------~~~~~~~g~~~ 205 (625)
..|+.|++.+..-|++ -++|..|+.++
T Consensus 34 S~C~~C~~~L~~~~lIPi~S~l~lrGrCr~C~~~I 68 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDLIPILSYLLLRGRCRYCGAPI 68 (92)
T ss_pred CcCcCCCCcCcccccchHHHHHHhCCCCcccCCCC
Confidence 5788899998888874 58999999876
No 198
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=21.63 E-value=69 Score=19.87 Aligned_cols=7 Identities=43% Similarity=1.189 Sum_probs=2.9
Q ss_pred cccccCC
Q 006917 180 QCEKCGK 186 (625)
Q Consensus 180 ~ce~cg~ 186 (625)
.|..||.
T Consensus 16 ~Cp~CG~ 22 (26)
T PF10571_consen 16 FCPHCGY 22 (26)
T ss_pred cCCCCCC
Confidence 3444443
No 199
>PLN02413 choline-phosphate cytidylyltransferase
Probab=21.39 E-value=1.5e+02 Score=30.22 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=18.4
Q ss_pred CCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccC
Q 006917 36 VNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGT 72 (625)
Q Consensus 36 ~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~ 72 (625)
+.+-+|.||++ +| |..+..|-.+.++.|+
T Consensus 35 ~FDLfH~GHir--~L------~qAK~lg~~d~LIVGV 63 (294)
T PLN02413 35 IYDLFHFGHAR--SL------EQAKKLFPNTYLLVGC 63 (294)
T ss_pred chhhCCHHHHH--HH------HHHHHhCCCCEEEEEe
Confidence 44889999998 35 2234555445566665
No 200
>PRK00420 hypothetical protein; Validated
Probab=21.20 E-value=58 Score=28.22 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=4.6
Q ss_pred ccccCCCccE
Q 006917 197 RCKVCQATPK 206 (625)
Q Consensus 197 ~~~~~g~~~~ 206 (625)
+|..||..+.
T Consensus 42 ~Cp~Cg~~~~ 51 (112)
T PRK00420 42 VCPVHGKVYI 51 (112)
T ss_pred ECCCCCCeee
Confidence 4444555443
No 201
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=21.15 E-value=60 Score=19.82 Aligned_cols=7 Identities=43% Similarity=1.360 Sum_probs=2.6
Q ss_pred cCCCCCC
Q 006917 184 CGKLLNP 190 (625)
Q Consensus 184 cg~~~~~ 190 (625)
||..+.+
T Consensus 4 C~~~i~~ 10 (24)
T PF07754_consen 4 CGRPIAP 10 (24)
T ss_pred CCCcccC
Confidence 3333333
No 202
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=20.98 E-value=3.2e+02 Score=24.76 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHh
Q 006917 449 KMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQE 491 (625)
Q Consensus 449 ~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~ 491 (625)
+.+...+-+-...+..|...-+...|..+=.+.+..++.|++.
T Consensus 98 ~~L~~~Lf~~L~~LD~AA~~kd~~~a~k~Y~~av~~~dafl~~ 140 (142)
T TIGR03042 98 LALAKELKDDLEKLDEAARLQDGPQAQKAYQKAAADFDAYLDL 140 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666666677788888888888888888888888888764
No 203
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=20.82 E-value=71 Score=29.99 Aligned_cols=27 Identities=19% Similarity=0.561 Sum_probs=15.2
Q ss_pred ccccccCCCCCCCccCCCccccCCCccEEE
Q 006917 179 DQCEKCGKLLNPTELKDPRCKVCQATPKIR 208 (625)
Q Consensus 179 ~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~ 208 (625)
-.|..|++.+. .....|..||+++..+
T Consensus 140 ~rC~GC~~~f~---~~~~~Cp~CG~~~~~~ 166 (177)
T COG1439 140 LRCHGCKRIFP---EPKDFCPICGSPLKRK 166 (177)
T ss_pred EEEecCceecC---CCCCcCCCCCCceEEe
Confidence 34556666554 1234677778776543
No 204
>COG3110 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.64 E-value=47 Score=31.63 Aligned_cols=17 Identities=29% Similarity=0.208 Sum_probs=13.6
Q ss_pred eeeecCCccccccCCcc
Q 006917 348 EYLNYEAGKFSKSKGVG 364 (625)
Q Consensus 348 g~l~~~G~KMSKS~GN~ 364 (625)
-+|-+||+|||+|+.-.
T Consensus 30 DlLvvdG~K~SgsLlk~ 46 (216)
T COG3110 30 DLLVVDGKKVSGSLLKG 46 (216)
T ss_pred cEEEecCcccccccccC
Confidence 35678999999998654
No 205
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=20.55 E-value=91 Score=27.37 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=20.4
Q ss_pred chhhhhhhhHHHHHHHHHHHCCCceeeeccC
Q 006917 42 LGNIIGCVLSADVFARYCRLRGYNALYICGT 72 (625)
Q Consensus 42 iGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~ 72 (625)
-||+. +++ .+++.++.+||+|.+.+.-
T Consensus 9 ~Ghv~-P~l---ala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 9 RGHVY-PFL---ALARALRRRGHEVRLATPP 35 (139)
T ss_dssp HHHHH-HHH---HHHHHHHHTT-EEEEEETG
T ss_pred hhHHH-HHH---HHHHHHhccCCeEEEeecc
Confidence 58887 444 7999999999999966543
No 206
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=20.22 E-value=1.2e+02 Score=24.56 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=28.0
Q ss_pred HHHHHHHHCCCceee--------------eccCcccchHHHHHH------HHcCCCHHHHHHHHHHH
Q 006917 54 VFARYCRLRGYNALY--------------ICGTDEYGTATETKA------MEENCTTQQICDKYYAI 100 (625)
Q Consensus 54 i~~R~~r~~G~~V~~--------------~~g~D~~G~~i~~~a------~~~g~~~~~~~~~~~~~ 100 (625)
=+..+|+.+||+|.- ++|-|..=.-++... ...|+++.++++...+.
T Consensus 12 ~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G~T~eEI~~~v~~r 78 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASGLTAEEIVQEVEER 78 (80)
T ss_pred HHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEEecCCCCHHHHHHHHHHh
Confidence 356788899998854 444443211111111 34589999999877554
No 207
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=20.13 E-value=75 Score=31.22 Aligned_cols=80 Identities=15% Similarity=0.205 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCc
Q 006917 125 EICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQAT 204 (625)
Q Consensus 125 ~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~ 204 (625)
+....+-.++..++-+-+....+.=|..|++.+.-.++-+.||+ |+.-..---.|-.|++.+-..-| .+.|..||..
T Consensus 116 ktl~~m~ek~~~ql~La~~iRavd~~dva~~v~~~hfLpd~~gn--~r~f~rq~~rc~~c~~k~rr~pl-~g~c~kcg~~ 192 (253)
T COG1933 116 KQLGDMEEKVKRQLDLARRIRAVDEHDVAERVLNSHFIPDLRGN--LRSFTRQEFRCVKCNTKFRRPPL-DGKCPICGGK 192 (253)
T ss_pred HHHhhHHHHHHHHhhHHHHHHHHHhHHHHHHhhccCCCcchhhh--hhhhhhheeehHhhhhhhcCCCc-cccccccCCe
Confidence 34455555666666666677777778889998888888889888 76533333458888887655443 3578889987
Q ss_pred cEE
Q 006917 205 PKI 207 (625)
Q Consensus 205 ~~~ 207 (625)
+..
T Consensus 193 ~~l 195 (253)
T COG1933 193 IVL 195 (253)
T ss_pred EEE
Confidence 653
Done!