Query 006917
Match_columns 625
No_of_seqs 307 out of 2348
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 12:23:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rqg_A Methionyl-tRNA syntheta 100.0 4E-115 1E-119 991.3 56.2 541 25-592 2-559 (722)
2 3h99_A Methionyl-tRNA syntheta 100.0 6E-109 2E-113 922.1 43.9 535 20-591 13-557 (560)
3 3u1f_A Methionyl-tRNA syntheta 100.0 2E-107 7E-112 909.0 41.1 519 21-587 5-540 (542)
4 3kfl_A Methionyl-tRNA syntheta 100.0 1E-105 5E-110 892.8 42.3 529 14-592 13-561 (564)
5 4dlp_A Aminoacyl-tRNA syntheta 100.0 3E-101 1E-105 855.2 43.9 516 15-586 14-534 (536)
6 2x1l_A Methionyl-tRNA syntheta 100.0 1.4E-95 5E-100 809.6 41.9 504 22-583 9-523 (524)
7 2d5b_A Methionyl-tRNA syntheta 100.0 1E-93 3.4E-98 791.2 39.5 493 24-581 2-500 (500)
8 2csx_A Methionyl-tRNA syntheta 100.0 1.6E-93 5.6E-98 788.1 36.1 489 24-583 4-497 (497)
9 1gax_A Valrs, valyl-tRNA synth 100.0 5.4E-84 1.8E-88 743.2 39.8 497 11-539 19-695 (862)
10 1ile_A Ilers, isoleucyl-tRNA s 100.0 1.9E-84 6.6E-89 751.8 30.1 497 22-540 35-771 (821)
11 1ffy_A Isoleucyl-tRNA syntheta 100.0 2E-81 7E-86 728.0 43.0 492 22-540 45-773 (917)
12 1wkb_A Leucyl-tRNA synthetase; 100.0 1.2E-76 4.1E-81 687.8 43.8 494 12-539 17-810 (810)
13 1wz2_A Leucyl-tRNA synthetase; 100.0 1.2E-75 4.2E-80 686.5 42.9 495 12-540 17-811 (967)
14 4arc_A Leucine--tRNA ligase; l 100.0 6.3E-75 2.2E-79 665.1 41.0 464 12-541 38-799 (880)
15 2v0c_A Aminoacyl-tRNA syntheta 100.0 1E-73 3.4E-78 660.9 45.2 462 12-539 17-795 (878)
16 1li5_A Cysrs, cysteinyl-tRNA s 100.0 4.5E-57 1.5E-61 488.4 25.8 362 8-491 5-372 (461)
17 3sp1_A Cysteinyl-tRNA syntheta 100.0 7.3E-56 2.5E-60 474.4 21.1 375 7-486 26-416 (501)
18 3c8z_A Cysteinyl-tRNA syntheta 100.0 2.3E-55 7.8E-60 470.5 24.0 353 9-487 25-390 (414)
19 3tqo_A Cysteinyl-tRNA syntheta 100.0 3.4E-53 1.2E-57 452.4 22.5 365 6-491 6-374 (462)
20 1iq0_A Arginyl-tRNA synthetase 100.0 1.3E-45 4.6E-50 411.4 21.5 369 26-499 104-558 (592)
21 2zue_A Arginyl-tRNA synthetase 100.0 1.8E-45 6.1E-50 411.3 20.6 375 22-493 116-591 (629)
22 3fnr_A Arginyl-tRNA synthetase 100.0 2.5E-37 8.6E-42 332.0 29.5 339 23-494 28-419 (464)
23 1f7u_A Arginyl-tRNA synthetase 100.0 8.7E-35 3E-39 322.5 27.5 342 22-494 140-570 (607)
24 1irx_A Lysyl-tRNA synthetase; 100.0 8.6E-34 3E-38 312.6 4.3 273 27-405 21-327 (523)
25 3aii_A Glutamyl-tRNA synthetas 99.7 1.8E-18 6E-23 186.4 10.0 281 28-409 97-396 (553)
26 1qtq_A GLNRS, protein (glutami 99.7 4.6E-16 1.6E-20 167.7 14.6 94 28-142 27-121 (553)
27 2cfo_A Glutamyl-tRNA synthetas 99.6 6.2E-15 2.1E-19 159.1 14.7 93 29-142 3-96 (492)
28 2hz7_A Glutaminyl-tRNA synthet 99.6 3.7E-15 1.3E-19 167.4 12.9 95 27-142 66-161 (851)
29 2o5r_A Glutamyl-tRNA synthetas 99.6 5.4E-14 1.9E-18 151.6 19.3 96 26-142 12-116 (481)
30 3afh_A Glutamyl-tRNA synthetas 99.5 5.4E-13 1.8E-17 143.6 15.2 94 28-142 26-128 (488)
31 3al0_C Glutamyl-tRNA(Gln) amid 99.4 2.2E-13 7.5E-18 150.0 11.6 94 28-142 130-232 (592)
32 2ja2_A Glutamyl-tRNA synthetas 99.4 2.3E-12 7.9E-17 138.7 16.5 94 28-142 7-109 (498)
33 1nzj_A Hypothetical protein YA 99.4 1.8E-13 6.1E-18 138.6 5.6 94 28-142 6-100 (298)
34 4g6z_A Glutamate-tRNA ligase; 99.4 1.3E-12 4.5E-17 139.7 12.2 94 28-142 26-120 (490)
35 1j09_A Glutamyl-tRNA synthetas 99.4 3E-12 1E-16 137.3 14.8 94 28-142 2-104 (468)
36 4gri_A Glutamate--tRNA ligase; 99.1 3.8E-10 1.3E-14 123.0 14.7 96 28-142 25-127 (512)
37 2cyb_A Tyrosyl-tRNA synthetase 98.3 1.2E-05 4.1E-10 82.5 16.8 66 312-387 173-239 (323)
38 2g36_A Tryptophanyl-tRNA synth 97.9 3.8E-05 1.3E-09 79.0 10.4 69 312-386 156-229 (340)
39 3tzl_A Tryptophanyl-tRNA synth 97.8 1.6E-05 5.6E-10 81.1 6.0 69 312-386 142-216 (322)
40 2dlc_X Tyrosyl-tRNA synthetase 97.7 0.00014 4.9E-09 76.3 12.0 65 312-386 185-252 (394)
41 1yi8_B Tryptophanyl-tRNA synth 97.6 0.00013 4.5E-09 75.3 8.2 69 312-386 165-239 (351)
42 2zp1_A Tyrosyl-tRNA synthetase 97.5 0.00042 1.4E-08 70.5 11.4 77 25-116 27-103 (314)
43 2cya_A Tyrosyl-tRNA synthetase 97.5 0.00015 5.1E-09 75.4 7.7 76 26-113 35-110 (364)
44 1h3f_A Tyrosyl-tRNA synthetase 97.5 0.00055 1.9E-08 72.4 12.0 65 312-386 190-256 (432)
45 1i6k_A TRPRS, tryptophanyl-tRN 97.4 0.00018 6.3E-09 73.5 6.6 65 35-113 9-73 (328)
46 2yy5_A Tryptophanyl-tRNA synth 97.4 0.00014 4.7E-09 75.1 5.2 71 28-113 6-76 (348)
47 3hv0_A Tryptophanyl-tRNA synth 97.3 0.0037 1.3E-07 65.2 15.7 78 24-113 72-150 (393)
48 3p0j_A Tyrosyl-tRNA synthetase 97.1 0.0025 8.4E-08 71.4 12.7 78 25-113 39-116 (690)
49 2ts1_A Tyrosyl-tRNA synthetase 95.4 0.017 5.8E-07 60.8 6.1 68 312-386 188-257 (419)
50 2yxn_A Tyrosyl-tRNA synthetase 95.4 0.012 4.1E-07 59.9 4.7 68 312-386 194-262 (322)
51 1jil_A Tyrrs, tyrosyl-tRNA syn 95.3 0.02 6.9E-07 60.3 6.6 68 312-386 189-258 (420)
52 2pid_A Tyrosyl-tRNA synthetase 95.3 0.016 5.6E-07 59.7 5.6 68 312-386 213-281 (356)
53 2jan_A Tyrosyl-tRNA synthetase 95.1 0.023 7.9E-07 59.9 5.9 68 312-386 190-259 (432)
54 3prh_A Tryptophanyl-tRNA synth 94.6 0.037 1.3E-06 57.4 6.0 105 7-126 11-123 (388)
55 1n3l_A Tyrosyl-tRNA synthetase 94.3 0.032 1.1E-06 58.0 4.8 65 312-386 181-247 (372)
56 3jxe_A Tryptophanyl-tRNA synth 94.2 0.067 2.3E-06 55.6 6.9 93 24-129 71-167 (392)
57 2el7_A Tryptophanyl-tRNA synth 93.7 0.037 1.2E-06 56.7 3.7 69 312-386 144-219 (337)
58 3a04_A Tryptophanyl-tRNA synth 92.7 0.15 5.1E-06 52.8 6.5 78 23-113 67-144 (372)
59 3hzr_A Tryptophanyl-tRNA synth 92.2 0.23 8E-06 51.4 7.2 77 24-113 80-156 (386)
60 3i05_A Tryptophanyl-tRNA synth 92.2 0.072 2.4E-06 55.5 3.3 77 24-113 76-153 (395)
61 1y42_X Tyrosyl-tRNA synthetase 92.0 0.094 3.2E-06 54.6 4.0 41 343-386 279-320 (392)
62 1n3l_A Tyrosyl-tRNA synthetase 91.7 0.28 9.5E-06 50.8 7.1 73 28-113 37-113 (372)
63 2ip1_A Tryptophanyl-tRNA synth 91.6 0.11 3.8E-06 54.8 4.0 78 24-113 100-178 (432)
64 3hzr_A Tryptophanyl-tRNA synth 91.4 0.15 5.3E-06 52.8 4.7 62 315-386 230-294 (386)
65 1r6u_A Tryptophanyl-tRNA synth 91.2 0.14 4.8E-06 54.0 4.3 77 24-113 106-183 (437)
66 3tze_A Tryptophanyl-tRNA synth 91.0 0.17 5.7E-06 52.9 4.5 77 24-113 99-176 (406)
67 3i05_A Tryptophanyl-tRNA synth 90.6 0.71 2.4E-05 48.0 8.9 54 312-369 227-283 (395)
68 3foc_A Tryptophanyl-tRNA synth 90.5 0.7 2.4E-05 48.7 8.7 78 24-113 89-167 (451)
69 3vgj_A Tyrosyl-tRNA synthetase 90.4 0.17 5.8E-06 52.4 3.9 76 27-113 57-132 (373)
70 2j5b_A Tyrosyl-tRNA synthetase 90.1 0.2 6.8E-06 51.4 4.1 77 26-113 40-116 (348)
71 3vgj_A Tyrosyl-tRNA synthetase 90.1 0.31 1.1E-05 50.4 5.6 65 312-386 203-272 (373)
72 1r6t_A Tryptophanyl-tRNA synth 90.0 0.21 7.2E-06 53.4 4.4 75 24-113 153-230 (477)
73 1r6t_A Tryptophanyl-tRNA synth 89.6 0.51 1.7E-05 50.4 7.0 51 315-369 309-363 (477)
74 3tze_A Tryptophanyl-tRNA synth 89.6 0.68 2.3E-05 48.3 7.7 54 312-369 246-303 (406)
75 3jxe_A Tryptophanyl-tRNA synth 89.3 0.24 8.1E-06 51.5 4.0 65 312-386 210-278 (392)
76 2ip1_A Tryptophanyl-tRNA synth 88.9 0.43 1.5E-05 50.3 5.6 54 312-369 252-309 (432)
77 1r6u_A Tryptophanyl-tRNA synth 88.2 0.7 2.4E-05 48.7 6.7 51 315-369 262-316 (437)
78 2cyc_A Tyrosyl-tRNA synthetase 88.0 0.58 2E-05 48.4 5.9 77 27-113 34-114 (375)
79 2cyc_A Tyrosyl-tRNA synthetase 88.0 0.35 1.2E-05 50.1 4.2 68 312-386 183-276 (375)
80 3foc_A Tryptophanyl-tRNA synth 86.9 0.52 1.8E-05 49.7 4.8 65 312-386 290-358 (451)
81 3n9i_A Tryptophanyl-tRNA synth 86.9 0.8 2.7E-05 46.7 6.0 80 30-125 19-102 (346)
82 3sz3_A Tryptophanyl-tRNA synth 86.7 0.55 1.9E-05 47.8 4.7 81 30-125 10-93 (341)
83 2j5b_A Tyrosyl-tRNA synthetase 85.8 0.93 3.2E-05 46.4 6.0 65 312-386 189-257 (348)
84 3sz3_A Tryptophanyl-tRNA synth 82.9 0.41 1.4E-05 48.8 1.7 69 312-386 146-228 (341)
85 2el7_A Tryptophanyl-tRNA synth 82.6 1.4 4.8E-05 44.8 5.6 68 35-113 9-77 (337)
86 3n9i_A Tryptophanyl-tRNA synth 77.8 1 3.5E-05 45.9 2.6 69 312-386 155-234 (346)
87 2ts1_A Tyrosyl-tRNA synthetase 77.6 1.2 4.2E-05 46.6 3.2 75 26-107 30-107 (419)
88 3prh_A Tryptophanyl-tRNA synth 75.7 1.5 5.2E-05 45.3 3.3 69 312-386 174-253 (388)
89 2pid_A Tyrosyl-tRNA synthetase 73.8 1.9 6.5E-05 44.1 3.4 40 26-71 46-86 (356)
90 1y42_X Tyrosyl-tRNA synthetase 73.7 2 6.9E-05 44.6 3.6 40 26-71 64-104 (392)
91 2yxn_A Tyrosyl-tRNA synthetase 73.3 2.1 7.1E-05 43.3 3.5 40 26-71 33-73 (322)
92 1jil_A Tyrrs, tyrosyl-tRNA syn 72.2 2.2 7.6E-05 44.7 3.5 79 26-112 32-113 (420)
93 3a04_A Tryptophanyl-tRNA synth 71.2 3.3 0.00011 42.6 4.5 67 312-386 211-281 (372)
94 2jan_A Tyrosyl-tRNA synthetase 71.2 2.8 9.4E-05 44.1 4.0 40 26-71 32-72 (432)
95 3p0j_A Tyrosyl-tRNA synthetase 70.2 6.9 0.00024 43.7 7.1 68 36-112 390-458 (690)
96 1lko_A Rubrerythrin all-iron(I 60.0 13 0.00045 34.2 5.8 38 120-157 128-165 (191)
97 1twf_L ABC10-alpha, DNA-direct 40.7 9.5 0.00033 28.9 1.2 30 180-209 30-59 (70)
98 3dvk_B Voltage-dependent R-typ 39.1 25 0.00084 20.3 2.4 20 41-60 2-21 (23)
99 3h0g_L DNA-directed RNA polyme 30.3 23 0.0008 26.1 1.8 31 180-210 23-53 (63)
100 4ayb_P DNA-directed RNA polyme 29.9 41 0.0014 23.1 2.8 29 180-208 5-36 (48)
101 2lcq_A Putative toxin VAPC6; P 27.7 24 0.00081 31.5 1.8 29 177-206 131-159 (165)
102 2ki0_A DS119; beta-alpha-beta, 26.9 34 0.0011 21.0 1.8 13 610-622 19-31 (36)
103 3s2u_A UDP-N-acetylglucosamine 24.5 54 0.0019 33.1 4.1 37 24-71 2-38 (365)
104 1dl6_A Transcription factor II 23.9 55 0.0019 23.6 2.8 25 165-191 13-43 (58)
105 2kdx_A HYPA, hydrogenase/ureas 23.2 64 0.0022 26.9 3.6 76 93-168 8-95 (119)
106 3pwf_A Rubrerythrin; non heme 21.2 28 0.00096 31.3 1.0 23 180-204 140-162 (170)
107 1p9o_A Phosphopantothenoylcyst 20.1 79 0.0027 31.4 4.1 51 22-74 35-90 (313)
No 1
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=3.8e-115 Score=991.30 Aligned_cols=541 Identities=38% Similarity=0.728 Sum_probs=495.4
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006917 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAV 104 (625)
Q Consensus 25 ~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 104 (625)
++||||+|||||||.|||||++++++.+|+++||+|++||+|+|++|||+||+||+.+|+++|++|+++++++++.|+++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~ 81 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKIT 81 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 67999999999999999999998456699999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCcccccc
Q 006917 105 YNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKC 184 (625)
Q Consensus 105 ~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~c 184 (625)
|++|||++|+|+||+++.|.+.++++|.+|+++|+||++.+++|||+.|++||+|++|+|+||. |+.++++|++|+.|
T Consensus 82 ~~~lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~--c~~~~~~Gd~c~~~ 159 (722)
T 1rqg_A 82 FQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEVC 159 (722)
T ss_dssp HHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSS--SCCSCCCTTTCSSS
T ss_pred HHHhCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCc--cCCccCCcchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCC
Q 006917 185 GKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKW 264 (625)
Q Consensus 185 g~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~W 264 (625)
|+.+++.+|++|+|++||++++++.++||||++++|++.+++|+++++ ||++.++++.+||++|++||||||++.|
T Consensus 160 G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~----wp~~~~~~~~~wl~~gl~dw~ISR~~~W 235 (722)
T 1rqg_A 160 GRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQP----WKPNVKNMVLSWIEEGLEERAITRDLNW 235 (722)
T ss_dssp CCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSC----CCHHHHHHHHHHHTTCCCCEECEECCSS
T ss_pred ccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHCCCcccceeccccC
Confidence 999999999999999999999999999999999999999999999874 8999999999999999999999999999
Q ss_pred CcccCCC--CCCCceeeeeccccchHHHhccCC------ChhhHhhcCC-CCCcceEEEEeecccchhHhHHHHHhhcCC
Q 006917 265 GVPVPHE--KFKDKVFYVWFDAPIGYISITSCY------TPDWEEWWKN-PENVALYQFMGKDNAPFHTVMFPSTLLGTE 335 (625)
Q Consensus 265 Gi~vP~~--~~~~~viyvWfDa~~~yi~~~~~~------~~~~~~~w~~-p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~ 335 (625)
|+|+|.+ +.+++++||||||+++|++....| +++|+.||+. +.++..+|++|+||++||+++|||++++++
T Consensus 236 G~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~ 315 (722)
T 1rqg_A 236 GIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYG 315 (722)
T ss_dssp SCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTC
T ss_pred ccccCccccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccC
Confidence 9999974 347999999999999999865433 2368899972 235667999999999999999999999987
Q ss_pred C--------CccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhH
Q 006917 336 E--------NWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNT 407 (625)
Q Consensus 336 ~--------~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~ 407 (625)
. .|++|+++++||||+.+|+|||||+||+|+|.++++ .||+|+|||||++.+++++|++||++.+.++.|+
T Consensus 316 ~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~-~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~ 394 (722)
T 1rqg_A 316 KYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLD-VFPADYLRYYLTTIMPETRDSDFSFSDFKVRINE 394 (722)
T ss_dssp CBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTT-TSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHH
T ss_pred CCcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHH-hcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHH
Confidence 3 356889999999999999999999999999999998 8999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 006917 408 ELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNA 487 (625)
Q Consensus 408 ~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~ 487 (625)
+++++++|+++|+.+++.+ ++++.+|.. ......|+++++.+..+++.+.++|++|+|+.|+..|++|++.+|+
T Consensus 395 ~l~~~l~N~~~R~~~~~~k----~~~~~~~~~--~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~n~ 468 (722)
T 1rqg_A 395 ELVNNLGNFVHRALTFVNR----YFDGVVPER--GELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNR 468 (722)
T ss_dssp TTTTTHHHHHHHHHHHHHH----HSTTBCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----hcCCCCCCc--ccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 566666532 1245689999999999999999999999999999999999999999
Q ss_pred HHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCcccccCCcccchhhhccCCCccCCC
Q 006917 488 YLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPA 567 (625)
Q Consensus 488 y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (625)
|++..+||.+.+++..++.+++++++++++.+++||+||||++|++||++||.+.. ..|.+ ..++.
T Consensus 469 Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~~~--~~w~~------------~~~~~ 534 (722)
T 1rqg_A 469 YFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEV--KRWEF------------RELPA 534 (722)
T ss_dssp HHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCSC--CCSSC------------CCCCT
T ss_pred HHHhcCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCCCcc--cCchh------------ccCCC
Confidence 99999999998766677788999999999999999999999999999999997531 12321 12567
Q ss_pred CCccCCCCCCccCCChHHHHHHHHH
Q 006917 568 GHRIGMSSPLFKELKDEDVRFFREK 592 (625)
Q Consensus 568 g~~l~~~~~Lf~ki~~~~i~~~~~~ 592 (625)
|++|+++++||+||++++++++.++
T Consensus 535 g~~~~~~~~lf~ri~~~~~~~~~~~ 559 (722)
T 1rqg_A 535 GHKVRKPEILFKKVTDDQIIYFILN 559 (722)
T ss_dssp TCBCCCCCCSCCCCCHHHHHHHHHH
T ss_pred CCCcCCCCCCcCCCCHHHHHHHHhh
Confidence 9999999999999999888766653
No 2
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=5.9e-109 Score=922.09 Aligned_cols=535 Identities=28% Similarity=0.530 Sum_probs=488.8
Q ss_pred CCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHH
Q 006917 20 PVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYA 99 (625)
Q Consensus 20 p~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 99 (625)
|.+++++||||+|+|||||++||||+|+. +.+|+++||+|++|++|.+++|+|+||+||+.+|++.|++++++++++.+
T Consensus 13 ~~~~~~~~~v~~~~py~ng~lHiGH~r~~-v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 91 (560)
T 3h99_A 13 MTQVAKKILVTCASPYANGSIHLGHMLEH-IQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQ 91 (560)
T ss_dssp ----CCEEEEEECCCBTTSCCBHHHHHHH-HHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCcEEEeCCCCCCCCCcchhhHHHH-HHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 45678899999999999999999999985 56999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCc
Q 006917 100 IHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGD 179 (625)
Q Consensus 100 ~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~ 179 (625)
.|+++|++|||++|.|++|+++.|...++++|.+|.++|+||++.+.+|||+.|+++|++++|+|+||. |++.+++|+
T Consensus 92 ~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~--c~~~~~~gd 169 (560)
T 3h99_A 92 EHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPK--CKSPDQYGD 169 (560)
T ss_dssp HHHHHHHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTT--TCCSSEETT
T ss_pred HHHHHHHHcCCCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCC--CCCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred cccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 006917 180 QCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCIT 259 (625)
Q Consensus 180 ~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~Is 259 (625)
+||.||+.+++.++++|+|++||++++.+.++||||++++|++.+.+++++. .|+++.++.+.+|+++++.|||||
T Consensus 170 ~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~----~~~~~~~~~~~~~l~~~l~D~~Is 245 (560)
T 3h99_A 170 NCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSG----ALQEQVANKMQEWFESGLQQWDIS 245 (560)
T ss_dssp BCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTS----CSCHHHHHHHHHHHHHCCCCEECE
T ss_pred hhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHhcCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999884 378888999999999999999999
Q ss_pred ccc-CCCcccCCCCCCCceeeeeccccchHHHhccCCC------hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhh
Q 006917 260 RDL-KWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYT------PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLL 332 (625)
Q Consensus 260 R~~-~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~------~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~ 332 (625)
|++ .||+|||.+ +++|+||||||+++|++...+++ .+|+.|||...+++++|++|+||++||+++|||+++
T Consensus 246 R~~~~WG~~iP~~--~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~ 323 (560)
T 3h99_A 246 RDAPYFGFEIPNA--PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLE 323 (560)
T ss_dssp EESSCSSCBCTTC--TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHH
T ss_pred ccCCcCCeeCCCC--CCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 998 789999976 79999999999999998764332 469999986667888999999999999999999999
Q ss_pred cCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCC-CCCCcCHHHHHHHHhHHHHH
Q 006917 333 GTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEV-SDTLFTWEDFQAKLNTELLN 411 (625)
Q Consensus 333 a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~-~d~~fs~~~~~~~~n~~l~~ 411 (625)
++|++ +|+.+++||||+.+|+|||||+||+|+|.|+++ .||+|++||||++..+.+ +|++|+++.+.++.|+++++
T Consensus 324 ~~g~~--~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~-~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~ 400 (560)
T 3h99_A 324 GSNFR--KPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN-HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVN 400 (560)
T ss_dssp HTTBC--CCSEEEEECCEEETTEECCTTTTCCCBHHHHHH-HSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCC
T ss_pred hCCCC--CCcEEEEEeEEEeCCeeccccCCCcCCHHHHHH-HcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 99974 679999999999999999999999999999998 799999999999988876 89999999999989999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHh
Q 006917 412 NLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQE 491 (625)
Q Consensus 412 ~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~ 491 (625)
+++|+++|+++++.+ ++++.+|.. ..|+||++.++.+++.+.++|++|+++.|+.+|++|++.+|+|++.
T Consensus 401 ~l~n~~~R~~~~~~~----~~~~~~~~~------~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~ 470 (560)
T 3h99_A 401 KVVNLASRNAGFINK----RFDGVLASE------LADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDE 470 (560)
T ss_dssp CCTHHHHTTHHHHHH----HSTTBCCSS------CSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----hcCCCCCCc------cccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999887 455555432 2467999999999999999999999999999999999999999999
Q ss_pred ccccccccC--CHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCcccccCCcccchhhhccCCCccCCCCC
Q 006917 492 SQFWKLYNE--DQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGH 569 (625)
Q Consensus 492 ~~pw~l~k~--~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 569 (625)
.+||.+.++ +..++.+++.++.++++.+++||+||||++||+||++||++ ..|.+. . ..+ .|+
T Consensus 471 ~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~----~~w~~~-------~---~~~-~~~ 535 (560)
T 3h99_A 471 QAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE----LTWDGI-------Q---QPL-LGH 535 (560)
T ss_dssp HCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC----CCTGGG-------G---SCC-CSC
T ss_pred cCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC----CChhhh-------h---ccC-CCC
Confidence 999988754 34566778889999999999999999999999999999986 133321 0 123 599
Q ss_pred ccCCCCCCccCCChHHHHHHHH
Q 006917 570 RIGMSSPLFKELKDEDVRFFRE 591 (625)
Q Consensus 570 ~l~~~~~Lf~ki~~~~i~~~~~ 591 (625)
+|+++.+||+||+.++++++.+
T Consensus 536 ~i~~~~~lf~ri~~~~~~~~~~ 557 (560)
T 3h99_A 536 KVNPFKALYNRIDMRQVEALVE 557 (560)
T ss_dssp BCCCCSCSCCCCCHHHHHHHHH
T ss_pred CCCCCCcCCCCCCHHHHHHHHh
Confidence 9999999999999988877764
No 3
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=2.2e-107 Score=908.96 Aligned_cols=519 Identities=22% Similarity=0.348 Sum_probs=464.0
Q ss_pred CCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHH
Q 006917 21 VPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAI 100 (625)
Q Consensus 21 ~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 100 (625)
....++||||+|+|||||.||||||++. +.+||++||+|++||+|.|++||||||+||+.+|+++|++|+++|+++++.
T Consensus 5 ~~~~k~f~Ittp~pY~nG~lHiGHa~~~-~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~ 83 (542)
T 3u1f_A 5 MKVEKVFFVTSPIYYVNAAPHIGHVYST-LITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGE 83 (542)
T ss_dssp --CCCCEEEEEEEEECSSCCCHHHHHHH-HHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEeCCCCCCCCchhhHHHHHH-HHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3456889999999999999999999995 559999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCcc
Q 006917 101 HKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQ 180 (625)
Q Consensus 101 ~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ 180 (625)
|++++++|||++|.|++|+++.|.+.|+++|.+|+++|+||++.+.++||++|++||+|++|.+.|+. +|+.
T Consensus 84 ~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~--------~g~~ 155 (542)
T 3u1f_A 84 FKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDK--------DGNP 155 (542)
T ss_dssp HHHHHHHHTCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECT--------TSCE
T ss_pred HHHHHHHhCCccCcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccc--------cCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988765 4555
Q ss_pred ccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCccccc
Q 006917 181 CEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITR 260 (625)
Q Consensus 181 ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR 260 (625)
| ++|++||++++.+.++||||+++++++++.+|+++.+.. .+|...++...+|+.++++||||||
T Consensus 156 ~--------------~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~P~~~~~~~~~~~~~~l~Dw~ISR 220 (542)
T 3u1f_A 156 C--------------KVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANPGC-IVPEFRRREVIRAVEKGLPDLSVSR 220 (542)
T ss_dssp E--------------EEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCTTS-EESHHHHHHHHHHHHHCCCCEECEE
T ss_pred c--------------cccCCCCCcceeeccccceecchhHHHHHHHHHhhcccc-cCCchhhHhHhhhhhccccccCccc
Confidence 5 457789999999999999999999999999999987643 3577777888999999999999999
Q ss_pred ccC----CCcccCCCCCCCceeeeeccccchHHHhccCC----------ChhhHhhcCCCCCcceEEEEeecccchhHhH
Q 006917 261 DLK----WGVPVPHEKFKDKVFYVWFDAPIGYISITSCY----------TPDWEEWWKNPENVALYQFMGKDNAPFHTVM 326 (625)
Q Consensus 261 ~~~----WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~----------~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~ 326 (625)
|+. ||||+|.+ +++++|||||++.+|+++...+ .+++..+|..|.| +|++|+||++||+++
T Consensus 221 q~~~~~~WGipiP~~--~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d---~~~~G~D~~~fh~~~ 295 (542)
T 3u1f_A 221 ARATLHNWAIPVPGN--PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPAD---VHVIGKDILKFHAIY 295 (542)
T ss_dssp EGGGGTTCSCEETTE--EEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCS---EEEEEGGGHHHHHTH
T ss_pred cccCcCCCCCccCCC--cCeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcce---EEEecccccccccch
Confidence 976 99999976 7999999999999999875321 2344555444667 999999999999999
Q ss_pred HHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHh
Q 006917 327 FPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLN 406 (625)
Q Consensus 327 ~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n 406 (625)
|||+++++|.+ +|+.+++||||+.+|+|||||+||||+|.++++ +||+|+|||||++.+++++|++||++.+.+++|
T Consensus 296 ~~a~l~~~g~~--~~~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~-~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n 372 (542)
T 3u1f_A 296 WPAFLLSAGLP--LPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAE-EFGYDALKYFLLRESGFSDDGDYSDKNMIARLN 372 (542)
T ss_dssp HHHHHHHHTCC--CCSCEEEECCCEETTBCCBTTTTBCCCHHHHHH-HHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHH
T ss_pred hHHHHHhhccc--ccceeccccceecCCceeccccCCCCChhHHHh-hcCchHHHHHHHhcCcccccccccHHHHHHHhh
Confidence 99999999874 889999999999999999999999999999998 799999999999989999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q 006917 407 TELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGN 486 (625)
Q Consensus 407 ~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N 486 (625)
++|+++++|+++|+.++..+ +++.+|.. ......|+|+++.++.+.+.+.++|++|++++|+..|++|++.+|
T Consensus 373 ~~l~n~l~N~~~r~~~~~~~-----~~~~~~~~--~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n 445 (542)
T 3u1f_A 373 GELADTLGNLVMRCTSAKIN-----VNGEWPSP--AAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAIN 445 (542)
T ss_dssp HTTTTTHHHHHHHHHCTTTS-----TTSBCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhc-----ccCCCCcc--chhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887654 45555543 245678999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCcccccCCcccchhhhccCCCccCC
Q 006917 487 AYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILP 566 (625)
Q Consensus 487 ~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (625)
+|++..+||.+.+++++++++++++++++++.+++||+||||++||+||++||++......+.+ ..++.++
T Consensus 446 ~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~~~~~~~~~~---------~~~~~l~ 516 (542)
T 3u1f_A 446 AYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHRKGIEN---------FEFGAVP 516 (542)
T ss_dssp HHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGGSSGGG---------GSTTCSC
T ss_pred HHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCCCCccccchhh---------ccccCCC
Confidence 9999999999988888889999999999999999999999999999999999997643211211 2355688
Q ss_pred CCCccCC---CCCCccCCChHHHH
Q 006917 567 AGHRIGM---SSPLFKELKDEDVR 587 (625)
Q Consensus 567 ~g~~l~~---~~~Lf~ki~~~~i~ 587 (625)
+|++|++ +++||+|++.++++
T Consensus 517 ~g~~i~~~~~~~~LF~kie~e~~e 540 (542)
T 3u1f_A 517 PGTRLGPAVEGEVLFSKRSTENTK 540 (542)
T ss_dssp TTCBCCCCCTTCCSSCCCCCCC--
T ss_pred CCCCcCCcCCCCCCcCCCChhhhh
Confidence 9999964 58999999987654
No 4
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=1.3e-105 Score=892.76 Aligned_cols=529 Identities=21% Similarity=0.355 Sum_probs=462.2
Q ss_pred cCCCCCCC--CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHH
Q 006917 14 HRVAKLPV--PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQ 91 (625)
Q Consensus 14 ~~~~~~p~--~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~ 91 (625)
..++|-|. .+++++|||+|+|||||++||||+|++ +.+|+++||+|++|++|.+++|+||||+||+.+|++.|++|+
T Consensus 13 ~~~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~-v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~ 91 (564)
T 3kfl_A 13 EAQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYST-LIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPM 91 (564)
T ss_dssp -----------CCCCEEEEEEEEECSSCCCHHHHHHH-HHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHH
T ss_pred hhhhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHH-HHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHH
Confidence 34455553 346789999999999999999999985 669999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCcc
Q 006917 92 QICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGC 171 (625)
Q Consensus 92 ~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c 171 (625)
++++++.+.|++++++|||++|.|++|+++.|...++++|++|.++|+||++.+.+|||+.|++|++++++.+.|+.
T Consensus 92 ~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~--- 168 (564)
T 3kfl_A 92 DFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDR--- 168 (564)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECT---
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998776643
Q ss_pred ccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhc
Q 006917 172 NYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKD 251 (625)
Q Consensus 172 ~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (625)
+|..|.. |..||++++.+.++||||+|++|++++.+|+++++.. .+|...++.+.+|+++
T Consensus 169 -----~g~~c~~--------------~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~-i~P~~~~~~~~~wl~~ 228 (564)
T 3kfl_A 169 -----DGKPCKV--------------SLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNC-IVPEFRRREVIKTVEK 228 (564)
T ss_dssp -----TSCEEEE--------------ETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTS-EESHHHHHHHHHHHHH
T ss_pred -----CCCEecc--------------ccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCc-cCCHHHHHHHHHHHhC
Confidence 4555532 1247999999999999999999999999999987532 3577788899999999
Q ss_pred CCCCccccc----ccCCCcccCCCCCCCceeeeeccccchHHHhccCCCh---------hh--HhhcCCCCCcceEEEEe
Q 006917 252 GLKPRCITR----DLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTP---------DW--EEWWKNPENVALYQFMG 316 (625)
Q Consensus 252 ~l~d~~IsR----~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~---------~~--~~~w~~p~d~~~i~~~G 316 (625)
|++|||||| ++.||||||++ +++|+||||||+++|++++..++. +| ++||| .| +|++|
T Consensus 229 gl~D~~ISR~~~~~~~WGipiP~~--~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp--~d---v~~~G 301 (564)
T 3kfl_A 229 GLFDLSISRKRESVMNWSIPVPGD--ERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWP--AD---VHVVG 301 (564)
T ss_dssp CCCCEECEEEGGGGTTCSCEETTE--EEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCS--CS---EEEEE
T ss_pred CCCCccccCcCCCCCCCCeecCCC--CCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCc--cc---eEEEe
Confidence 999999999 79999999965 799999999999999998643232 27 89995 46 99999
Q ss_pred ecccchhHhHHHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCc
Q 006917 317 KDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLF 396 (625)
Q Consensus 317 kD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~f 396 (625)
+||++||+++||++|+++|.+ +|+.+++||||+.+|+|||||+||+|+|.++++ .||+|++||||++..+.++|++|
T Consensus 302 kDii~FH~~~wpa~L~a~g~~--~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~-~~G~DalR~~ll~~~~~~~D~~f 378 (564)
T 3kfl_A 302 KDILKFHAIYWPAFLMSAELP--LPERLVSHGWWTKDHKKISKSLGNAFDPVEKAK-EFGIDALKYFLMRESNFQDDGDY 378 (564)
T ss_dssp GGGHHHHHTHHHHHHHHTTCC--CCSCEEEECCEEETTEECCTTTTCCCCHHHHHH-HHCHHHHHHHHHHHCCSSCCEEC
T ss_pred ecccchHHHHHHHHHHhCCCC--CCcEEEEcccEeeCCccccccCCCCCCHHHHHH-HcCcHHHHHHHHHcCCcccCCCC
Confidence 999999999999999999874 889999999999999999999999999999998 79999999999998899999999
Q ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 006917 397 TWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLR 476 (625)
Q Consensus 397 s~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~ 476 (625)
|++.+.+++|++++++++|+++|+++++.+ +++.+|.. ......|+++++.++.+++.+.++|++|++++|+.
T Consensus 379 s~~~~~~~~n~~l~~~l~N~~~R~~~~~~~-----~~g~~p~~--~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~ 451 (564)
T 3kfl_A 379 SDKNMVARLNGELADTLGNLVSRCVAPKIN-----VNGMWPEP--AEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALI 451 (564)
T ss_dssp CHHHHHHHHHHTTTTTHHHHHHHHHCTTTS-----TTSBCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCcCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 999999999999999999999999999874 56666653 23467899999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCcccccCCcccchhh
Q 006917 477 IGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLE 556 (625)
Q Consensus 477 ~i~~l~~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~ 556 (625)
+|++|++.+|+|++..+||.+.+++.+++.++++++.++++++++||+||||++|++||++||++...+..|.+
T Consensus 452 ~i~~l~~~~n~Y~~~~kpW~l~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~~------ 525 (564)
T 3kfl_A 452 AIFDVLRSLNAYVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAARVGMEN------ 525 (564)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGSSSGGG------
T ss_pred HHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCcccccCHhH------
Confidence 99999999999999999999988777888889999999999999999999999999999999987543213332
Q ss_pred hccCCCccCCCCCccCCC---CCCccCCChHHHHHHHHH
Q 006917 557 RARKPWEILPAGHRIGMS---SPLFKELKDEDVRFFREK 592 (625)
Q Consensus 557 ~~~~~~~~~~~g~~l~~~---~~Lf~ki~~~~i~~~~~~ 592 (625)
. .++.+++|++|+++ ++||+||++++++++...
T Consensus 526 -~--~~~~~~~g~~~~~~~~~~~lf~r~~~~~~~~~~~~ 561 (564)
T 3kfl_A 526 -Y--LFGIVKPGTKIAGLAEGQVVFQKVTLPTEEGERSS 561 (564)
T ss_dssp -S--SSCCSCTTCBCCCCCTTCCSSCCCCCC--------
T ss_pred -h--hcccCCCCCCcCCCCCCCCCcCCCCcchhhhhhhc
Confidence 1 13457889999999 999999998877665543
No 5
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=3.4e-101 Score=855.16 Aligned_cols=516 Identities=24% Similarity=0.418 Sum_probs=442.6
Q ss_pred CCCCCCCCC-CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHH
Q 006917 15 RVAKLPVPG-KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQI 93 (625)
Q Consensus 15 ~~~~~p~~~-~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~ 93 (625)
.+++.|... ++++|||+|+|||||++||||+|++ +.+|+++||+|++||+|.+++|+||||+||+.+|++.|++|+++
T Consensus 14 ~~~~~~~~~~~~~~~i~~p~pypng~lHiGH~r~~-v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~ 92 (536)
T 4dlp_A 14 AQTQGPGSMSREKYYITTAIAYPNGKPHIGHAYEL-IATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDL 92 (536)
T ss_dssp ----------CCEEEEEECCBCCSSCCCHHHHHHH-HHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHH
T ss_pred ccccCCCcCCCCCEEEeCCCCCCCCCcCcchhHHH-HHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHH
Confidence 344445433 4579999999999999999999985 56999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCcccc
Q 006917 94 CDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNY 173 (625)
Q Consensus 94 ~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~ 173 (625)
++++.+.|++++++|||++|.|++|+++.|...++++|.+|.++|+||++.+++|||++|+++++++++...
T Consensus 93 ~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~-------- 164 (536)
T 4dlp_A 93 ADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVR-------- 164 (536)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEEC--------
T ss_pred HHHHHHHHHHHHHHcCCCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999877421
Q ss_pred CCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCC
Q 006917 174 DSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGL 253 (625)
Q Consensus 174 ~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 253 (625)
..|. .|++||++++.+.++||||+++++++.+.+++++.+.. .+|....+.+.+|+++++
T Consensus 165 --~~g~-----------------~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~-i~P~~~~~~~~~~l~~~l 224 (536)
T 4dlp_A 165 --ADGV-----------------RYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGF-IMPAERRNEIVSFVKSGL 224 (536)
T ss_dssp --TTSC-----------------EECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTS-EESHHHHHHHHHHHHTCC
T ss_pred --CCCC-----------------cccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCc-cCcHHHHHHHHHHHhcCC
Confidence 1122 46678999999999999999999999999999987532 357778888999999999
Q ss_pred CCcccccc-cCCCcccCCCCCCCceeeeeccccchHHHhccCCC---hhhHhhcCCCCCcceEEEEeecccchhHhHHHH
Q 006917 254 KPRCITRD-LKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYT---PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPS 329 (625)
Q Consensus 254 ~d~~IsR~-~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~---~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa 329 (625)
+||||||+ ..||+|||.+ +++|+||||||+++|++.. +|+ .+|++||| .| +|++|+||++||+++||+
T Consensus 225 ~D~~ISR~~~~WGipiP~~--~~~v~yvWfda~~~y~s~~-~~~~~~~~~~~~~p--~d---v~~~G~D~~~fh~~~~~a 296 (536)
T 4dlp_A 225 KDLSISRTTFDWGIPVPGD--EKHVMYVWVDALTNYITAL-GYPDTTDERWAYWP--AN---AHIIGKDISRFHAVYWPA 296 (536)
T ss_dssp CCEECEEC--CCSCBCTTC--TTSEECHHHHHHHHHHHTT-TTTCTTSGGGGGCS--CS---EEEEEGGGHHHHHTHHHH
T ss_pred CccCCccCCCcCCeeCCCC--CCCceEEeeCCcHHHHHhc-CCCCCchHHHhhCC--cc---eEEeechHHHHHHHHHHH
Confidence 99999997 6799999976 7999999999999999986 554 36899995 46 999999999999999999
Q ss_pred HhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHH
Q 006917 330 TLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTEL 409 (625)
Q Consensus 330 ~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l 409 (625)
+++++|.+ +|+.+++||||+.+|+|||||+||+|+|.++++ .||+|++||||++.++.++|++||++.+.++.|+++
T Consensus 297 ~l~a~g~~--~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i~-~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l 373 (536)
T 4dlp_A 297 FLMSAQLP--LPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVE-RYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADL 373 (536)
T ss_dssp HHHHTTCC--CCSCEEEECCEEC------------CCHHHHHH-HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHC
T ss_pred HHHHCCCC--CCcEEEeeeeEeeCCceecccCCCCCCHHHHHH-HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999874 789999999999999999999999999999998 799999999999988899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHH
Q 006917 410 LNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYL 489 (625)
Q Consensus 410 ~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~ 489 (625)
+++++|+++|+++++.+ ++++.+|.. ......|+|+++.++.+++.+.++|++|++++|+.+|++|++.+|+|+
T Consensus 374 ~~~l~N~~~R~~~~~~~----~~~~~~p~~--~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~ 447 (536)
T 4dlp_A 374 ANDLGNLAQRSLSMIAK----NCEGKVPQP--GAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYF 447 (536)
T ss_dssp CCCCHHHHHHHHHHHHH----HSTTBCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh----hcCCCCCCc--ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 456666643 235678999999999999999999999999999999999999999999
Q ss_pred HhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCcccccCCcccchhhhccCCCccCCCCC
Q 006917 490 QESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGH 569 (625)
Q Consensus 490 ~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 569 (625)
+..+||.+.+++.+++.++++++.++++.+++||+||||++|++||++||++...+ .+.+ . ..+ .+++|+
T Consensus 448 ~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~~~~~~-~~~~-------~-~~~-~~~~g~ 517 (536)
T 4dlp_A 448 AGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVPADKR-QFAD-------V-LAS-PLAGGT 517 (536)
T ss_dssp HHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTCCTTSC-STHH-------H-HHC-CCCTTC
T ss_pred HhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCCcccc-CHHH-------h-hhc-cCCCCC
Confidence 99999998776777778899999999999999999999999999999999975432 2322 1 112 578899
Q ss_pred ccCCCCCCccCCChHHH
Q 006917 570 RIGMSSPLFKELKDEDV 586 (625)
Q Consensus 570 ~l~~~~~Lf~ki~~~~i 586 (625)
+|+++.+||+||++++.
T Consensus 518 ~~~~~~~lf~ri~~~~~ 534 (536)
T 4dlp_A 518 DLPAPQPVFPRYVEADE 534 (536)
T ss_dssp BCCCCCCSSCCCC----
T ss_pred CcCCCCCCCCCCCCccc
Confidence 99999999999997643
No 6
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=1.4e-95 Score=809.62 Aligned_cols=504 Identities=26% Similarity=0.444 Sum_probs=445.8
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHH
Q 006917 22 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIH 101 (625)
Q Consensus 22 ~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 101 (625)
.|++.++|+||+|||||++||||+|+. +.+|+++||+|++|++|.+++|+|+||+||+.+|++.|++|+++++++.+.|
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~-i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 87 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEY-IATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVF 87 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHH-HHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHH-HHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 467789999999999999999999985 5599999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccc-cCCCCCccccCCCCCcc
Q 006917 102 KAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVE-GSCPTLGCNYDSARGDQ 180 (625)
Q Consensus 102 ~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~-g~cp~~~c~~~~~~g~~ 180 (625)
++++++|||++|.|++|+++.|.+.++++|.+|+++|+||++.+.+|||+.|++|+++.++. |.
T Consensus 88 ~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~--------------- 152 (524)
T 2x1l_A 88 QRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQP--------------- 152 (524)
T ss_dssp HHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECT---------------
T ss_pred HHHHHHcCCcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCC---------------
Confidence 99999999999999999999999999999999999999999999999999999999998873 32
Q ss_pred ccccCCCCCCCccCCCccc-cCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 006917 181 CEKCGKLLNPTELKDPRCK-VCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCIT 259 (625)
Q Consensus 181 ce~cg~~~~~~~l~~~~~~-~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~Is 259 (625)
|| +.|+ +||++++.+.++||||++++|++.+.+++++.+.. .+|...++.+.+|+.++++|||||
T Consensus 153 ---~G----------~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~-i~p~~~~~~~~~~~~~~l~Dw~iS 218 (524)
T 2x1l_A 153 ---DG----------TRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEF-IGPDARRNEIVSFVSGGLKDLSIS 218 (524)
T ss_dssp ---TS----------CEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGG-EESHHHHHHHHHHHTTCCCCEECE
T ss_pred ---CC----------CccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCe-eCCHHHHHHHHHHHHcCCcccceE
Confidence 12 2577 89999999999999999999999999999875321 247777888899998899999999
Q ss_pred ccc-CCCcccCCCCCCCceeeeeccccchHHHhccCCCh----hhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcC
Q 006917 260 RDL-KWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTP----DWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGT 334 (625)
Q Consensus 260 R~~-~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~----~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~ 334 (625)
|++ .||+|+|.+ +++|+||||||+++|++.. +++. .|++||| .| +|++|+||++||+++|||+++++
T Consensus 219 Rqr~~WG~~iP~~--~~~~~yvWfds~~~~~~~~-g~p~~~~~~~~~~~p--~d---i~~~G~D~~~fh~~~~~a~l~~~ 290 (524)
T 2x1l_A 219 RTTFDWGVPVPDH--PDHVMYVWVDALTNYLTGV-GFPDTESESFRRYWP--AD---LHMIGKDIIRFHTVYWPAFLMSA 290 (524)
T ss_dssp ESSCCSSCEETTE--EEEEECHHHHHHTHHHHTT-TTTCTTSHHHHHHCS--CS---EEEEEGGGHHHHHTHHHHHHHHH
T ss_pred CCCCCcCccCCCC--CCCEEEEecCCchHHHHHc-CCCCCchHHHHhhCC--Ce---EEEEeechhHhHHHHHHHHHHHC
Confidence 996 699999954 6899999999999999865 5542 5888995 57 99999999999999999999998
Q ss_pred CCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHH
Q 006917 335 EENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLG 414 (625)
Q Consensus 335 ~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~ 414 (625)
|. ++|+++++||||+.+|+|||||+||+|+|.|+++ .||+|++|||+++.+++++|++||++.+.+..|++++++++
T Consensus 291 g~--~~~~~v~~hG~v~~~G~KMSKS~GN~v~p~d~i~-~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~ 367 (524)
T 2x1l_A 291 GL--PLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVD-TFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELG 367 (524)
T ss_dssp TC--CCCSCEEEECCEEECSCSEETTTEESSCHHHHHH-HHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCH
T ss_pred CC--CCCcEEEECcEEEeCCcccCCcCCCCCCHHHHHH-HcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 86 4789999999999999999999999999999998 79999999999987888999999999999988888999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhccc
Q 006917 415 NFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQF 494 (625)
Q Consensus 415 n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~p 494 (625)
|+++|+.+++.+ ++++.+|.. ....+.|+++++.+..+++.+.++|++|+++.|+..|++|++.+|+|++..+|
T Consensus 368 n~~~r~~~~~~~----~~~~~~~~~--~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~ 441 (524)
T 2x1l_A 368 NLAQRSLSMVAK----NLGAAVPDP--GEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEP 441 (524)
T ss_dssp HHHHHHHHHHHH----HSTTBCCCC--CCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHH----hcCCCCCCc--cccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999998876 344444421 23457899999999999999999999999999999999999999999999999
Q ss_pred cccccC----CHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCcccccCCcccchhhhccCCCccCCCCCc
Q 006917 495 WKLYNE----DQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHR 570 (625)
Q Consensus 495 w~l~k~----~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 570 (625)
|.+.++ +..+++++++++.++++.+++||+||||++||+||++||.+...+ .|.+ .. ..+++|++
T Consensus 442 w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~~~~~-~~~~-------~~---~~~~~~~~ 510 (524)
T 2x1l_A 442 WVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQPTDER-DFSA-------IA---NRIKPGTS 510 (524)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCCTTSC-SGGG-------GS---SCCCTTCB
T ss_pred hhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCCcccc-chhH-------hh---hcCCCCCC
Confidence 998765 234566788999999999999999999999999999999865332 2322 10 13578999
Q ss_pred cCCCCCCccCCCh
Q 006917 571 IGMSSPLFKELKD 583 (625)
Q Consensus 571 l~~~~~Lf~ki~~ 583 (625)
|+++.+||+|+++
T Consensus 511 ~~~~~~lf~~~~~ 523 (524)
T 2x1l_A 511 LPAPSGIFPRYQN 523 (524)
T ss_dssp CCCCCCSSCCCC-
T ss_pred CCCCCCCCCCCCC
Confidence 9999999999985
No 7
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=1e-93 Score=791.20 Aligned_cols=493 Identities=24% Similarity=0.432 Sum_probs=438.5
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006917 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKA 103 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 103 (625)
++++|||+|+|||||++||||+|+. +.+|+++||+|++|++|.+++|+|+||+||+.+|++.|++++++++++.+.|++
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~-~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 80 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTT-VVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKR 80 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHH-HHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCCcchhhHHHH-HHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999985 569999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccc
Q 006917 104 VYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEK 183 (625)
Q Consensus 104 ~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~ 183 (625)
++++|||++|.+++|+++.|.+.++++|++|+++|+||++.+.++||+.|++++++.+
T Consensus 81 ~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~---------------------- 138 (500)
T 2d5b_A 81 AWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKE---------------------- 138 (500)
T ss_dssp HHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTT----------------------
T ss_pred HHHHhCCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchh----------------------
Confidence 9999999999999999999999999999999999999999999999999999988654
Q ss_pred cCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCccccc--c
Q 006917 184 CGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITR--D 261 (625)
Q Consensus 184 cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR--~ 261 (625)
+.++.|++||.+++.+.++||||++++|++.+.+++++++.. ..|...++.+.+|++++++|||||| +
T Consensus 139 ---------l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~l~~~l~Dw~iSRp~~ 208 (500)
T 2d5b_A 139 ---------LVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDL-IRPEGYRNEVLAMLAEPIGDLSISRPKS 208 (500)
T ss_dssp ---------SBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTS-EESHHHHHHHHHHHTSCCCCEECEEETT
T ss_pred ---------ccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCe-eCCHHHHHHHHHHHhcCCCCeecccccc
Confidence 344568889999999999999999999999999999986532 2367777888899999999999999 4
Q ss_pred -cCCCcccCCCCCCCceeeeeccccchHHHhccCCCh--hhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCc
Q 006917 262 -LKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTP--DWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENW 338 (625)
Q Consensus 262 -~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~--~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~ 338 (625)
..||+|+|.+ +++++||||||+++|++.. +|+. +++++|+ .| +|++|+||++||+++||++++++|.
T Consensus 209 ~~~WG~piP~~--~~~v~~vWfds~~~y~~~~-g~~~~~~~~~~~p--~d---i~~~G~D~~~fh~~~~~a~~~~~g~-- 278 (500)
T 2d5b_A 209 RVPWGIPLPWD--ENHVTFVWFDALLNYVSAL-DYPEGEAYRTFWP--HA---WHLIGKDILKPHAVFWPTMLKAAGI-- 278 (500)
T ss_dssp TCCSSCEETTE--EEEEECHHHHHHTHHHHTT-TTTTCHHHHHHGG--GE---EEEEEGGGHHHHHTHHHHHHHHHTC--
T ss_pred cccCccccCCC--CCCeeEEccccchhhHHHc-CCCCCchHHHcCC--Ce---EEEEeechhhhHHHHHHHHHHHcCC--
Confidence 5799999975 7899999999999999864 5653 3778895 46 9999999999999999999999886
Q ss_pred cCcceEEeeeeeec-CCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHH
Q 006917 339 TLMKTISVTEYLNY-EAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFV 417 (625)
Q Consensus 339 ~~~~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~ 417 (625)
++|+.+++||||+. +|+|||||+||+|+|.|+++ .||+|++|||+++.+++++|++||++.+.+..|+.++++++|++
T Consensus 279 ~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~-~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~ 357 (500)
T 2d5b_A 279 PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLE-KYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLV 357 (500)
T ss_dssp CCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHH-HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHH
T ss_pred CCCcEEEECceEEeCCCCcccccCCCCCCHHHHHH-hcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999998 99999999999999999998 79999999999987889999999999999988889999999999
Q ss_pred HHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhcccccc
Q 006917 418 NRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKL 497 (625)
Q Consensus 418 ~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~pw~l 497 (625)
+|+.+++.+ .+++.++.. . ++++++.+..+++.+.++|++|+++.|+..|++|++.+|+|++..+||.+
T Consensus 358 ~r~~~~~~~----~~~~~~~~~---~----~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~~ 426 (500)
T 2d5b_A 358 QRTRAMLFR----FAEGRIPEP---V----AGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWEL 426 (500)
T ss_dssp HHHHHHHHH----HSTTBCCCC---C----CCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHH----hcCCCCCch---h----HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 999988765 333333321 1 25688889999999999999999999999999999999999999999987
Q ss_pred ccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCcccccCCcccchhhhccCCCccCCCCCccCCCCCC
Q 006917 498 YNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPL 577 (625)
Q Consensus 498 ~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~L 577 (625)
.+++.++++++++++.++++.++++|+||||++||+||++||.+. . ..+.+ . ..|+.+++|++|+++.+|
T Consensus 427 ~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~~-~-~~~~~-------~-~~~~~~~~~~~~~~~~~l 496 (500)
T 2d5b_A 427 FKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE-E-VRLEE-------A-ERWGLAEPRPIPEEAPVL 496 (500)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCS-S-CCGGG-------G-GSSCCSCCCBCCSCCCCS
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCCCc-c-cChhh-------h-hhcccCCCCCCCCCCCCC
Confidence 755555677889999999999999999999999999999999864 2 23322 1 125557789999999999
Q ss_pred ccCC
Q 006917 578 FKEL 581 (625)
Q Consensus 578 f~ki 581 (625)
|+|+
T Consensus 497 f~~~ 500 (500)
T 2d5b_A 497 FPKK 500 (500)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9986
No 8
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=1.6e-93 Score=788.09 Aligned_cols=489 Identities=27% Similarity=0.452 Sum_probs=407.3
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006917 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKA 103 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 103 (625)
++++|||+|+|||||.+||||+|+. +.+|+++||+|++|++|.+++|+|+||+||+.+|+++|++|+++++++.+.|++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~-~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 82 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTT-IAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKK 82 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHH-HHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHH-HHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999985 559999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccc
Q 006917 104 VYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEK 183 (625)
Q Consensus 104 ~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~ 183 (625)
++++|||++|.+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|++++++.++.
T Consensus 83 ~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~-------------------- 142 (497)
T 2csx_A 83 LWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELA-------------------- 142 (497)
T ss_dssp HHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC--------------------------------------
T ss_pred HHHHhCCcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhc--------------------
Confidence 999999999999999999999999999999999999999999999999999999876542
Q ss_pred cCCCCCCCccCC-CccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCccccc--
Q 006917 184 CGKLLNPTELKD-PRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITR-- 260 (625)
Q Consensus 184 cg~~~~~~~l~~-~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR-- 260 (625)
+ +.|++||.+++.+.++||||++++|++++.+++++++.. ..|...++.+.+|++++++||||||
T Consensus 143 -----------~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~l~~~~~Dw~isR~~ 210 (497)
T 2csx_A 143 -----------EDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEF-IQPDYRRNEIISFVKQGLKDLSVTRPR 210 (497)
T ss_dssp --------------------------CCEEEEECTTSSHHHHHHHHHHCTTS-BCSHHHHHHHHHHHHHCCCCEECEEET
T ss_pred -----------cCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCe-eCcHHHHHHHHHHHhcCCccccccccC
Confidence 2 567788999999999999999999999999999987532 2356666778899998999999999
Q ss_pred -ccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCcc
Q 006917 261 -DLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWT 339 (625)
Q Consensus 261 -~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~ 339 (625)
+.+||+|+|++ +++++||||||+++|+++.. ++-.++| |.| +|++|+||++||+++||++++++|. +
T Consensus 211 ~~~~WG~~iP~~--~~~~i~vW~ds~~~~~s~~~---~~~~~~~--p~d---i~~~G~D~~~~H~~~~~a~l~~~g~--~ 278 (497)
T 2csx_A 211 SRVKWGIPVPFD--PEHTIYVWFDALFNYISALE---DKVEIYW--PAD---LHLVGKDILRFHTVYWPAFLMSLGY--E 278 (497)
T ss_dssp TTCCSSEEETTE--EEEEECSHHHHHTHHHHTTT---TTHHHHC--SCS---CEEEEGGGHHHHHTHHHHHHHHHTC--C
T ss_pred CCCCCceecCCC--CCceEEEecccchhhcccCC---CcchhhC--Cce---EEEeecchhHhHHHHHHHHHHHcCC--C
Confidence 45799999975 68999999999999998762 1112678 457 9999999999999999999999886 4
Q ss_pred CcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHH
Q 006917 340 LMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNR 419 (625)
Q Consensus 340 ~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R 419 (625)
+|+++++||||+.+|+|||||+||+|+|.|+++ +||+|++|||+++.+++++|++||++.+.+..|++++++++|+++|
T Consensus 279 ~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~-~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R 357 (497)
T 2csx_A 279 LPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQ-EYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSR 357 (497)
T ss_dssp CCSCEEEECCEESSSSBCCTTTTCCCCHHHHHH-HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCcEEEECcEEEeCCceeCCcCCCCCCHHHHHH-HCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999998 7999999999998788999999999999998889999999999999
Q ss_pred HHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhcccccccc
Q 006917 420 VLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYN 499 (625)
Q Consensus 420 ~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~pw~l~k 499 (625)
+.+++.+ ..++.++ ...|+++++.+..+++.+.++|++|+++.|+..|++|++.+|+|++..+||.+.+
T Consensus 358 ~~~~~~~----~~~~~~~-------~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k~~~~~~ 426 (497)
T 2csx_A 358 VVNMAHK----FLGGEVS-------GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQPWALNK 426 (497)
T ss_dssp HHHHHHH----HSTTCBC-------CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHT
T ss_pred HHHHHHH----hcCCCCC-------chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhcc
Confidence 9999876 2333222 1235679999999999999999999999999999999999999999999998765
Q ss_pred -CCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCCCCcccccCCcccchhhhccCCCccCCCCCccCCCCCCc
Q 006917 500 -EDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPLF 578 (625)
Q Consensus 500 -~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~Lf 578 (625)
.+..+++++++++.++++.+++||+||||++||+||++||.+.. .+.+ . .|+.+ |++|+++.+||
T Consensus 427 ~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~~~---~~~~-------~--~~~~~--~~~~~~~~~lf 492 (497)
T 2csx_A 427 ERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEKEF---LKEL-------K--PYSKN--TYKLGERKILF 492 (497)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCSCC---CSSC-------C--SCCCS--CBCCCCCCCSS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCCcc---chhh-------c--ccccC--CCcCCCCCCCC
Confidence 34456778899999999999999999999999999999997631 2322 1 23333 99999999999
Q ss_pred cCCCh
Q 006917 579 KELKD 583 (625)
Q Consensus 579 ~ki~~ 583 (625)
+|+++
T Consensus 493 ~~~~~ 497 (497)
T 2csx_A 493 PKREG 497 (497)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99973
No 9
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=5.4e-84 Score=743.21 Aligned_cols=497 Identities=19% Similarity=0.238 Sum_probs=410.1
Q ss_pred ccccCCCCCCC--CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHH---
Q 006917 11 ERNHRVAKLPV--PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAME--- 85 (625)
Q Consensus 11 ~~~~~~~~~p~--~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~--- 85 (625)
.|.+ ..|.+. .++++|+|++|||||||.|||||+++.++ +|+++||+||+|++|++++|||+||+|++.++++
T Consensus 19 ~W~~-~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l-~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~ 96 (862)
T 1gax_A 19 KWAK-NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSL-QDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLL 96 (862)
T ss_dssp HHHH-SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHH-HHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTT
T ss_pred HHHh-CCCccCcCCCCCcEEEEcCCCCCCCCcchhhhHHHHH-HHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHH
Confidence 3455 666653 35678999999999999999999999655 9999999999999999999999999999999874
Q ss_pred -cCCCH------------HHHHHHHHHHHHHHHhhcCccccc--ccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeee
Q 006917 86 -ENCTT------------QQICDKYYAIHKAVYNWFNISFDE--FGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYC 150 (625)
Q Consensus 86 -~g~~~------------~~~~~~~~~~~~~~~~~lgi~~D~--~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~ 150 (625)
.|+++ .++++++...++++|++||+++|+ .+.|+++.|.+.|+++|.+|+++|+||++.+.++||
T Consensus 97 ~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wc 176 (862)
T 1gax_A 97 KEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWC 176 (862)
T ss_dssp TTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEE
T ss_pred HcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccC
Confidence 36654 367899999999999999999983 234999999999999999999999999999999999
Q ss_pred CCCCccccccccc-----c------------------------------------------------CCCCCcccc----
Q 006917 151 DTCKRFLADRLVE-----G------------------------------------------------SCPTLGCNY---- 173 (625)
Q Consensus 151 ~~~~~~l~~~~v~-----g------------------------------------------------~cp~~~c~~---- 173 (625)
+.|+++|++.+|+ | .||. |+.
T Consensus 177 p~~~T~Lsd~EV~~~e~~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~--~~~~ipi 254 (862)
T 1gax_A 177 PRCETTLSDLEVETEPTPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPL--TEVWIPI 254 (862)
T ss_dssp TTTTEEECGGGEEECCEEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTT--CCCBCCE
T ss_pred CCcCccccccccccccccceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCccHHHHHcCCEEECCC--CCCeeeE
Confidence 9999999999875 1 2554 221
Q ss_pred ---------------------------------------CCCCCcccccc--CCCC------------------------
Q 006917 174 ---------------------------------------DSARGDQCEKC--GKLL------------------------ 188 (625)
Q Consensus 174 ---------------------------------------~~~~g~~ce~c--g~~~------------------------ 188 (625)
-+..|..|++| |.+-
T Consensus 255 i~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~ 334 (862)
T 1gax_A 255 LADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKE 334 (862)
T ss_dssp EECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEE
T ss_pred EeccccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeee
Confidence 13467788888 6431
Q ss_pred CCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCccc
Q 006917 189 NPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPV 268 (625)
Q Consensus 189 ~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~v 268 (625)
.+..+.+|+|+|||++++.+.++|||++++++++.+++++++... ..+|.+.+++..+||+ +++|||||||+.||+||
T Consensus 335 ~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~-~~~P~~~~~~~~~wl~-~l~DW~ISRqr~WG~pI 412 (862)
T 1gax_A 335 EDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDI-AFVPERWKKVNMDWLE-NVKDWNISRQLWWGHQI 412 (862)
T ss_dssp EEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCC-EESSSHHHHHHHHHHH-TCCCCCCBCCCSSSCCC
T ss_pred ccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCc-eEcCHHHHHHHHHHHh-cccceeEecccCCCccc
Confidence 112346799999999999999999999999999999999975442 1357778888999996 69999999999999999
Q ss_pred CCCCCC-------------------------------CceeeeeccccchHHHhccCCC---hhhHhhcCCCCCcceEEE
Q 006917 269 PHEKFK-------------------------------DKVFYVWFDAPIGYISITSCYT---PDWEEWWKNPENVALYQF 314 (625)
Q Consensus 269 P~~~~~-------------------------------~~viyvWfDa~~~yi~~~~~~~---~~~~~~w~~p~d~~~i~~ 314 (625)
|.|.++ .+|+++||||.+.|++.. +|+ +++++||| .| +|+
T Consensus 413 P~w~~~~~~~i~v~~~~~l~~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~-~~p~~~~~~~~~~P--~d---~~v 486 (862)
T 1gax_A 413 PAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTL-GWPEETEDLKAFYP--GD---VLV 486 (862)
T ss_dssp CCEEETTTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGG-TTTSCCHHHHHSCS--BS---CEE
T ss_pred CceecCCCCEEEEeccccccccchhhhhcCchheecCCcccceeeccCCcchhhc-cCCCchHHHHhhCC--ce---EEe
Confidence 975321 356777888888887654 565 35888885 57 899
Q ss_pred EeecccchhHhHHHHHhhc-CCCCccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCC
Q 006917 315 MGKDNAPFHTVMFPSTLLG-TEENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVS 392 (625)
Q Consensus 315 ~GkD~~~fH~~~~pa~l~a-~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~ 392 (625)
+|+||++||.....++... .|. .|++++++||+++ .+|+|||||+||+|+|.++++ .||+|++||||++.+++++
T Consensus 487 ~G~Dii~~W~a~~~~~~~~~~g~--~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~-~yGaDalR~~ll~~~~~~~ 563 (862)
T 1gax_A 487 TGYDILFLWVSRMEVSGYHFMGE--RPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVE-RYGADALRFALIYLATGGQ 563 (862)
T ss_dssp EEGGGTTTTHHHHHHHHHHHSSS--CSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHH-HHCHHHHHHHHHHHCCTTC
T ss_pred cCccccccHHHHHHHHHHHhcCC--CcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHH-HcChHHHHHHHHhcCCCCC
Confidence 9999999876544443332 232 3679999999997 899999999999999999998 7999999999999888999
Q ss_pred CCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHH
Q 006917 393 DTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLK 472 (625)
Q Consensus 393 d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~ 472 (625)
|++||++.+... ++++++++|+++.+...+.. +. |.. ......|+|+++.++.+++.+.++|++|+|+
T Consensus 564 D~~fs~~~l~~~--~~f~nkl~N~~rf~~~~~~~-----~~---~~~--~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~ 631 (862)
T 1gax_A 564 DIRLDLRWLEMA--RNFANKLYNAARFVLLSREG-----FQ---AKE--DTPTLADRFMRSRLSRGVEEITALYEALDLA 631 (862)
T ss_dssp CEECCHHHHHHH--HHHHHHHHHHHHHHHHHSSS-----CC---CCB--CCCCHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred CCccCHHHHHHH--HHHHHHHHHHHHHHHhcccC-----CC---Ccc--ccCCHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 999999999886 56999999997555432221 11 211 1246789999999999999999999999999
Q ss_pred HHHHHHHHHH--HHHhHHHHhccccccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcC
Q 006917 473 QGLRIGMSIS--SEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLN 539 (625)
Q Consensus 473 ~a~~~i~~l~--~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg 539 (625)
.|+..|++|+ ..+|+|++..+||.. . + ..++..++.++++.+++||+||||++||+||+.|+
T Consensus 632 ~A~~~l~~f~~~~~~n~Yie~~k~~l~-~-~---~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~ 695 (862)
T 1gax_A 632 QAAREVYELVWSEFCDWYLEAAKPALK-A-G---NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALT 695 (862)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHH-T-T---BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHcchhhh-c-c---HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 9999999999 469999999999843 2 2 23466788899999999999999999999999996
No 10
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=1.9e-84 Score=751.80 Aligned_cols=497 Identities=20% Similarity=0.260 Sum_probs=401.8
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc-CCC-----------
Q 006917 22 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE-NCT----------- 89 (625)
Q Consensus 22 ~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-g~~----------- 89 (625)
.++++|+|+.|||||||.|||||+++.++ +|+++||+||+|++|.+++|||+||+||+.+|++. |.+
T Consensus 35 ~~~~~f~i~~~pPy~nG~lHiGH~~~~~~-~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~ 113 (821)
T 1ile_A 35 KGGPRYTVYEGPPTANGLPHVGHAQARSY-KDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIE 113 (821)
T ss_dssp TTSCBCCBCCCCCCTTSCCCTTHHHHHHH-HHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHH
T ss_pred CCCCcEEEecCCCCCCCCCchhhhHhHHH-HHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHH
Confidence 36678999999999999999999999655 99999999999999999999999999999999996 876
Q ss_pred -----HHHHHHHHHHHHHHHHhhcC--cccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCcccccccc
Q 006917 90 -----TQQICDKYYAIHKAVYNWFN--ISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLV 162 (625)
Q Consensus 90 -----~~~~~~~~~~~~~~~~~~lg--i~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v 162 (625)
|+++++++.+.+++++++|| +++|++++|+++.|.+.++++|.+|+++|+||++.++++||+.|+++|++++|
T Consensus 114 ~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev 193 (821)
T 1ile_A 114 RFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV 193 (821)
T ss_dssp HHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHh
Confidence 45688889999999999999 66778999999999999999999999999999999999999999999999999
Q ss_pred -cc--------------------------------CCCC-----------Cc----------------------------
Q 006917 163 -EG--------------------------------SCPT-----------LG---------------------------- 170 (625)
Q Consensus 163 -~g--------------------------------~cp~-----------~~---------------------------- 170 (625)
+| |.|+ +.
T Consensus 194 ~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~ 273 (821)
T 1ile_A 194 ALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGT 273 (821)
T ss_dssp HHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTS
T ss_pred hcCcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHhhCc
Confidence 32 1111 00
Q ss_pred --------------------------------------------------cccCCC---------CCccccccCCCCCC-
Q 006917 171 --------------------------------------------------CNYDSA---------RGDQCEKCGKLLNP- 190 (625)
Q Consensus 171 --------------------------------------------------c~~~~~---------~g~~ce~cg~~~~~- 190 (625)
|+.+|. .-..|+.||++.+.
T Consensus 274 ~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~ 353 (821)
T 1ile_A 274 QVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEP 353 (821)
T ss_dssp CEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSGG
T ss_pred EEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCcccC
Confidence 110000 00124556765441
Q ss_pred --------------Ccc--------------CCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHH
Q 006917 191 --------------TEL--------------KDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAI 242 (625)
Q Consensus 191 --------------~~l--------------~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (625)
.+| .+|+|||||++++++.++||||+++++++++++++++..+.|.+.+ .
T Consensus 354 ~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P~~~~--~ 431 (821)
T 1ile_A 354 FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIK--E 431 (821)
T ss_dssp GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGT--T
T ss_pred cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCeEEECchhh--H
Confidence 111 3589999999999999999999999999999999998765554431 2
Q ss_pred HHHHHHHhcCCCCcccccccCCCcccCCCCC-------------------------------------------------
Q 006917 243 QGTYAWLKDGLKPRCITRDLKWGVPVPHEKF------------------------------------------------- 273 (625)
Q Consensus 243 ~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~------------------------------------------------- 273 (625)
+++.+||+ +++|||||||+.||+|||.+.+
T Consensus 432 ~~~~~~l~-~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r 510 (821)
T 1ile_A 432 GRYGEWLK-NLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRR 510 (821)
T ss_dssp TTTHHHHH-TCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEE
T ss_pred hHHHHHHh-CCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccCCCCCCchhh
Confidence 35678996 7999999999999999995311
Q ss_pred CCceeeeeccccchHHHhccCCC----hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcC-CCCccCcceEEeee
Q 006917 274 KDKVFYVWFDAPIGYISITSCYT----PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGT-EENWTLMKTISVTE 348 (625)
Q Consensus 274 ~~~viyvWfDa~~~yi~~~~~~~----~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~-~~~~~~~~~i~~hg 348 (625)
+.+|+||||||+++|.+.. +++ +.|+.||| .| +|++|+||++||.....++..++ |. ++|+++++||
T Consensus 511 ~~dvld~WfdS~~~~~~~~-~~p~~~~~~f~~~~P--~d---l~~~G~D~~r~w~~~~~~~~~~~~~~--~pf~~v~~hg 582 (821)
T 1ile_A 511 VPYVIDVWYDSGAMPFASL-HYPFEHEEVFRESFP--AD---FIAEGIDQTRGWFNSLHQLGVMLFGS--IAFKNVICHG 582 (821)
T ss_dssp CSCBCCHHHHHHHHHHHTT-TTTTSCHHHHHHHSS--BS---BEEEEGGGGGTHHHHHHHHHHHHHSS--CSBSEEEEEC
T ss_pred cccccceecccccchHhhc-CCCccchHHHhhcCC--cc---cccchhhhhccHHHHHHHHHHHhcCC--CCcceEEEEe
Confidence 1369999999999888764 443 35788895 57 99999999988654333332222 33 4789999999
Q ss_pred eee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCC
Q 006917 349 YLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKP 427 (625)
Q Consensus 349 ~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~ 427 (625)
|++ .+|+|||||+||+|+|.++++ .||+|++||||++.+++++|++||++.+.++. ++++++++|+++|+..+...
T Consensus 583 ~vl~~~G~KMSKS~GNvV~p~dli~-~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~-~~~~~kl~N~~~~~~~~~~~- 659 (821)
T 1ile_A 583 LILDEKGQKMSKSKGNVVDPWDIIR-KFGADALRWYIYVSAPPEADRRFGPNLVRETV-RDYFLTLWNVYSFFVTYANL- 659 (821)
T ss_dssp CEECTTSSCCCTTTTCCCCHHHHHT-TTCHHHHHHHHHHHSCSSSCEECCHHHHHHHH-HHTHHHHHHHHHHHHHHHHH-
T ss_pred eEECCCCCCCCccCCCCCCHHHHHH-HhCHHHHHHHHHhCCCCCCCcEecHHHHHHHH-HHHHHHHHHHHHHHHHhhcc-
Confidence 987 699999999999999999998 79999999999998889999999999998743 57899999999997643211
Q ss_pred CCCCCCCCCC-CC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHhHHHHhcc--ccccccCC
Q 006917 428 PGRGYGSIIP-DS-PKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSIS--SEGNAYLQESQ--FWKLYNED 501 (625)
Q Consensus 428 ~~~~~~~~~p-~~-~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~--~~~N~y~~~~~--pw~l~k~~ 501 (625)
++..| .. ........|+++++.++.+++.+.++|++|+++.|+..|++|+ ..+|.|++..+ +|...++
T Consensus 660 -----~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~~- 733 (821)
T 1ile_A 660 -----DRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDA- 733 (821)
T ss_dssp -----HCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTTT-
T ss_pred -----ccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc-
Confidence 11111 00 0112456899999999999999999999999999999999999 67999998874 5866432
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 502 QGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 502 ~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
..+ .+++.++.++++.+++||+||||++||+||++|+.
T Consensus 734 ~~r-~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~ 771 (821)
T 1ile_A 734 LDR-EAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVR 771 (821)
T ss_dssp SST-THHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHHHHHcCCccchHHHHHHHhccc
Confidence 122 25567788899999999999999999999999985
No 11
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=2e-81 Score=727.96 Aligned_cols=492 Identities=16% Similarity=0.222 Sum_probs=398.3
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCH-----------
Q 006917 22 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTT----------- 90 (625)
Q Consensus 22 ~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~----------- 90 (625)
.++++|+|++|||||||.|||||+++. +.+|+++||+||+|++|.|++|||+||+||+.+|++.|+++
T Consensus 45 ~~~~~f~i~~~pPY~nG~lHiGHa~n~-~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~ 123 (917)
T 1ffy_A 45 KGNETFILHDGPPYANGNLHMGHALNK-ILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREK 123 (917)
T ss_dssp TTSCBCCEECCCCBSSSCCCHHHHHHH-HHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHH
T ss_pred cCCCceeeCCCCCCCCCcchHHHHHHH-HHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHH
Confidence 467789999999999999999999996 45999999999999999999999999999999999999875
Q ss_pred -HHHHHHHHHHHHHHHhhcCccc--ccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccc---c
Q 006917 91 -QQICDKYYAIHKAVYNWFNISF--DEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVE---G 164 (625)
Q Consensus 91 -~~~~~~~~~~~~~~~~~lgi~~--D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~---g 164 (625)
.++++++.+.++++|++||+++ |++++|+++.|.+.++++|.+|+++|+||++.++++||+.|+++|++.+|+ .
T Consensus 124 ~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~ 203 (917)
T 1ffy_A 124 CKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDK 203 (917)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhcccc
Confidence 6789999999999999999975 588999999999999999999999999999999999999999999999986 1
Q ss_pred C----------------------------CCC--Cccc----cC----------C--------------------CCC--
Q 006917 165 S----------------------------CPT--LGCN----YD----------S--------------------ARG-- 178 (625)
Q Consensus 165 ~----------------------------cp~--~~c~----~~----------~--------------------~~g-- 178 (625)
+ .|+ +||. .. + .+-
T Consensus 204 ~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 283 (917)
T 1ffy_A 204 RSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIK 283 (917)
T ss_dssp EEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCC
T ss_pred cCceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceee
Confidence 1 121 1110 00 0 000
Q ss_pred ccccccCCCCCC--------------------------------------------------------------------
Q 006917 179 DQCEKCGKLLNP-------------------------------------------------------------------- 190 (625)
Q Consensus 179 ~~ce~cg~~~~~-------------------------------------------------------------------- 190 (625)
..++.||..+..
T Consensus 284 ~~~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~ 363 (917)
T 1ffy_A 284 LEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFE 363 (917)
T ss_dssp CCCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCS
T ss_pred eeeeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccC
Confidence 122223321100
Q ss_pred ------------------------C--ccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHH
Q 006917 191 ------------------------T--ELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQG 244 (625)
Q Consensus 191 ------------------------~--~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (625)
. ...+|+|||||++++++.++|||++++++++.+++++++..+ .|...+++
T Consensus 364 G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~---~P~~~~~r 440 (917)
T 1ffy_A 364 GMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNF---KVNWGKTR 440 (917)
T ss_dssp SSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEE---SSHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcc---cCHHHHHH
Confidence 0 012589999999999999999999999999999999998765 36667788
Q ss_pred HHHHHhcCCCCcccccccCCCcccCCCCCC-Cc------------------eeeeeccccchHHHhc---------cCC-
Q 006917 245 TYAWLKDGLKPRCITRDLKWGVPVPHEKFK-DK------------------VFYVWFDAPIGYISIT---------SCY- 295 (625)
Q Consensus 245 ~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~-~~------------------viyvWfDa~~~yi~~~---------~~~- 295 (625)
+.+||++ ++|||||||+.||+|||.+.++ +. .+|+|||+..+++... ..+
T Consensus 441 ~~~~l~~-~~DW~ISRqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~ 519 (917)
T 1ffy_A 441 IYNMVRD-RGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFT 519 (917)
T ss_dssp HHHHHHH-CCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCE
T ss_pred HHHHHhc-CccceeeccCCcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCccccc
Confidence 9999986 8999999999999999985332 22 3466666665555420 011
Q ss_pred ----------------------ChhhHhhcCCCCCcceEEEEeecccc--hhHhHHHHHhhcCCCCccCcceEEeeeeee
Q 006917 296 ----------------------TPDWEEWWKNPENVALYQFMGKDNAP--FHTVMFPSTLLGTEENWTLMKTISVTEYLN 351 (625)
Q Consensus 296 ----------------------~~~~~~~w~~p~d~~~i~~~GkD~~~--fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~ 351 (625)
.+++ .| |.| +|+.|+||++ ||..+++++... |. .|++++++||||+
T Consensus 520 ~~~D~lD~WfdSg~~~~~~l~~~~~~--~~--P~D---l~~~G~D~~r~wf~~~l~~s~~~~-g~--~Pfk~v~~hG~V~ 589 (917)
T 1ffy_A 520 KETDIMDVWFDSGSSHRGVLETRPEL--SF--PAD---MYLEGSDQYRGWFNSSITTSVATR-GV--SPYKFLLSHGFVM 589 (917)
T ss_dssp ECCCEECHHHHHHTHHHHTTTTSTTC--CS--SBS---EEEEEGGGGTTHHHHHHHHHHHHH-SS--CSBSEEEEECCEE
T ss_pred ccCCCcCeecCCCCCHHHHcCCchhc--CC--Cce---EEEEEecccccHHHHHHHHHHHhh-CC--CcccceeEeeeEE
Confidence 1111 13 567 9999999985 899999887643 43 3679999999998
Q ss_pred -cCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCC
Q 006917 352 -YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGR 430 (625)
Q Consensus 352 -~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~ 430 (625)
.+|+|||||+||+|+|.++++ +||+|++|||+++ +++++|++||++.+... ++..++|+|++++++..+..
T Consensus 590 d~~G~KMSKSlGNvV~P~dvi~-~yGaDalR~~lls-~~~~~D~~fs~~~l~~~--~~~~~kl~n~~r~~l~nl~~---- 661 (917)
T 1ffy_A 590 DGEGKKMSKSLGNVIVPDQVVK-QKGADIARLWVSS-TDYLADVRISDEILKQT--SDDYRKIRNTLRFMLGNIND---- 661 (917)
T ss_dssp CTTSCCCCSSSSCCCCHHHHHH-HTCHHHHHHHHHT-SCTTSCEECCHHHHHHH--HHHHHHHHHHHHHHHHTSTT----
T ss_pred cCCCcCcccccCCcCChHHHHH-hCCHHHHHHHHhc-cCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhhhhc----
Confidence 599999999999999999998 7999999999998 89999999999999875 56788999999888766543
Q ss_pred CCC---CCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HHhHHHHhccccccccC-CHhh
Q 006917 431 GYG---SIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISS--EGNAYLQESQFWKLYNE-DQGS 504 (625)
Q Consensus 431 ~~~---~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~--~~N~y~~~~~pw~l~k~-~~~~ 504 (625)
++ +.++. ......|+|+++.++.+++.+.++|++|+|+.|+..|++|+. .+|.|++..+||..... +...
T Consensus 662 -~~~~~~~v~~---~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~ 737 (917)
T 1ffy_A 662 -FNPDTDSIPE---SELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHI 737 (917)
T ss_dssp -CCHHHHCCCG---GGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHH
T ss_pred -cCcccccCCc---cccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHH
Confidence 22 11221 124578999999999999999999999999999999999997 68999999999765432 2223
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 505 CSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 505 ~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
+.++..++..++..+++||+|||||+||+||+.|+.
T Consensus 738 r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~ 773 (917)
T 1ffy_A 738 RRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPH 773 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHccc
Confidence 345667788889999999999999999999999974
No 12
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-76 Score=687.75 Aligned_cols=494 Identities=18% Similarity=0.246 Sum_probs=392.7
Q ss_pred cccCCCCCCCC----CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc-
Q 006917 12 RNHRVAKLPVP----GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE- 86 (625)
Q Consensus 12 ~~~~~~~~p~~----~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~- 86 (625)
|++...|.+.. ++++|+|++|||||||+|||||+++.+ .+|+++||+|++||+|.+++|||+||+||+..|++.
T Consensus 17 W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~-~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~ 95 (810)
T 1wkb_A 17 WLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYT-IPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIK 95 (810)
T ss_dssp HHHTTTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHH-HHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHH
T ss_pred HHhCCCcccCchhcCCCCcEEEEeCCCCCCCCCccccchhHH-HHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhc
Confidence 44555555432 357899999999999999999999964 599999999999999999999999999999887642
Q ss_pred -----------------------CCCHHHHHHHHHHHHHHHHhhcCcccc--cccCCCC--hhHHHHHHHHHHHHHHCCC
Q 006917 87 -----------------------NCTTQQICDKYYAIHKAVYNWFNISFD--EFGRTST--PQQTEICQAIFKKLLENNW 139 (625)
Q Consensus 87 -----------------------g~~~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~--~~~~~~v~~~~~~L~~~G~ 139 (625)
+..|+++++++.+.|+++|++|||++| .+++|++ +.|...++++|.+|+++|+
T Consensus 96 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gl 175 (810)
T 1wkb_A 96 NRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGY 175 (810)
T ss_dssp TTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTC
T ss_pred ccCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCC
Confidence 357899999999999999999999998 5678999 9999999999999999999
Q ss_pred EEEeeeeeeeeCCCCccccccccccC-C----------------------------CC-----------CccccC-----
Q 006917 140 LSEYTTQQLYCDTCKRFLADRLVEGS-C----------------------------PT-----------LGCNYD----- 174 (625)
Q Consensus 140 iy~~~~~~~y~~~~~~~l~~~~v~g~-c----------------------------p~-----------~~c~~~----- 174 (625)
||++.++++||+.|+++|++.+|+.. | |+ +.|.|-
T Consensus 176 iy~~~~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~~ 255 (810)
T 1wkb_A 176 IVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVR 255 (810)
T ss_dssp EEEEEEEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSSCSCCEEEEEESCGGGGGGCCEEEECTTSCEEEEEEE
T ss_pred EEECCeeeeccCCcCCCccHHHHhcCCCCccceeEEEEEEccCCCCceEEEEEcCCchHhhhhhEEEECCCCcEEEEEec
Confidence 99999999999999999999987531 1 11 001000
Q ss_pred C-----------------------------------------------------------CCC-----------------
Q 006917 175 S-----------------------------------------------------------ARG----------------- 178 (625)
Q Consensus 175 ~-----------------------------------------------------------~~g----------------- 178 (625)
+ .+|
T Consensus 256 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~ 335 (810)
T 1wkb_A 256 RKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVA 335 (810)
T ss_dssp ETTEEEEEEEEHHHHHHHTTSSCEEEEEEECTTTTTTTCEEECSSSCCEEEEEECTTSCTTSTTSCEEECTTTCHHHHHH
T ss_pred CCCcceeeeeHHHHHHHHHhhhcceEEEEEEEchhhcCCEEECCCCCCeeEEEecCcccCCCCceeEEeCCCCCHHHHHH
Confidence 0 000
Q ss_pred --------ccccccCCC---------C-----------------------CCCc--------------------------
Q 006917 179 --------DQCEKCGKL---------L-----------------------NPTE-------------------------- 192 (625)
Q Consensus 179 --------~~ce~cg~~---------~-----------------------~~~~-------------------------- 192 (625)
+.|..||.. + ++.+
T Consensus 336 ~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~~g~~ 415 (810)
T 1wkb_A 336 LEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPY 415 (810)
T ss_dssp HCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEECSGGG
T ss_pred HHhhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEeccCc
Confidence 113333421 0 0000
Q ss_pred ---------------c------------C-CCccccCCCccEEE-eccceeeeccc--hHHHHHHHHHhCCCCCCCChhH
Q 006917 193 ---------------L------------K-DPRCKVCQATPKIR-DTDHLFLELPL--IKDKLEEYINKMSVSGSWSQNA 241 (625)
Q Consensus 193 ---------------l------------~-~~~~~~~g~~~~~~-~~~~~f~~l~~--~~~~l~~~~~~~~~~~~~~~~~ 241 (625)
| . .|+|+|||++++.+ .++||||++++ +++.+++++++..+ +|...
T Consensus 416 ~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~---~P~~~ 492 (810)
T 1wkb_A 416 EGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKI---LPETR 492 (810)
T ss_dssp TTEEHHHHHHHHHHHHHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEE---ESGGG
T ss_pred CCeEHHHhHHHHHHHHHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEE---ECcch
Confidence 0 1 48899999999988 79999999986 99999999988754 45556
Q ss_pred HHHHHHHHhcCCCCcccccccCCCcccCCC------CCCCceeeeeccccchHHHhc-----------------------
Q 006917 242 IQGTYAWLKDGLKPRCITRDLKWGVPVPHE------KFKDKVFYVWFDAPIGYISIT----------------------- 292 (625)
Q Consensus 242 ~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~------~~~~~viyvWfDa~~~yi~~~----------------------- 292 (625)
++++.+|++ +++||||||++.||+|+|.+ ...++++|||+++..+|++..
T Consensus 493 ~~~~~~~l~-~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 571 (810)
T 1wkb_A 493 RAQFEAIID-WLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEE 571 (810)
T ss_dssp HHHHHHHHH-HCCCEECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHHHHSC
T ss_pred hchHHHHhh-cccCccccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhHhhcCCCHHHcCccceeeeeccc
Confidence 678889997 69999999999999999953 234679999999887776510
Q ss_pred ------------cCCC--------hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeeec
Q 006917 293 ------------SCYT--------PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNY 352 (625)
Q Consensus 293 ------------~~~~--------~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~~ 352 (625)
.+++ ++++.||| .| +|++|+||++||+.++.++..++-...+.|+.+++||||+.
T Consensus 572 ~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p--~D---i~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~ 646 (810)
T 1wkb_A 572 FSEDKEKELEKKTGIPAEIIHEMKEEFEYWYP--LD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL 646 (810)
T ss_dssp CCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCS--CS---EEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE
T ss_pred cccCccccchhhhCCCHHHHHhhHHHHHhhCC--ce---EEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe
Confidence 0111 23566774 57 99999999999999986654442211235799999999999
Q ss_pred CCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 006917 353 EAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGY 432 (625)
Q Consensus 353 ~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~ 432 (625)
+|+|||||+||+|+|.++++ .||+|++||||++.+++++|++||++.+... .+++++++|+++++...
T Consensus 647 ~G~KMSKS~GNvv~p~dli~-~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~--~~~l~rl~n~~~~~~~~--------- 714 (810)
T 1wkb_A 647 EGQKMSKSKGNVLNFIDAIE-ENGADVVRLYIMSLAEHDSDFDWRRKEVGKL--RKQIERFYELISQFAEY--------- 714 (810)
T ss_dssp TTBCCCTTTTCCCBHHHHHH-HHCHHHHHHHHHHHCCTTCCEEECHHHHHHH--HHHHHHHHHHHHHHHTC---------
T ss_pred CCeehhhcCCCcCCHHHHHH-HcChHHHHHHHHhcCCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhc---------
Confidence 99999999999999999998 7999999999997799999999999988765 56777788877665421
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHhHHHHhccccccccCCHhhHHHHHHH
Q 006917 433 GSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIG-MSISSEGNAYLQESQFWKLYNEDQGSCSIVIRT 511 (625)
Q Consensus 433 ~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i-~~l~~~~N~y~~~~~pw~l~k~~~~~~~~~l~~ 511 (625)
. .|.. ......|+++++.++.+++.+.++|++|+++.|+..+ +.+++.+|+|++..++ .+. ..+..+
T Consensus 715 ~--~~~~--~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k~-----~~~---~~~~~~ 782 (810)
T 1wkb_A 715 E--VKGN--VELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEG-----RDD---EAKRYV 782 (810)
T ss_dssp C--CCSC--CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTT-----CCC---HHHHHH
T ss_pred c--Cccc--ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcC-----cch---hHHHHH
Confidence 0 1111 1245679999999999999999999999999999865 5999999999998763 111 223678
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHcC
Q 006917 512 SVGLVYLLACLLEPFMPSFSLEVLKQLN 539 (625)
Q Consensus 512 ~~~~l~~l~~ll~P~~P~~ae~i~~~Lg 539 (625)
+.++++.+++||+||||++||+||++||
T Consensus 783 l~~~l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 783 LRTLADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp HHHHHHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 8899999999999999999999999987
No 13
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-75 Score=686.47 Aligned_cols=495 Identities=19% Similarity=0.242 Sum_probs=390.9
Q ss_pred cccCCCCCCCC----CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc-
Q 006917 12 RNHRVAKLPVP----GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE- 86 (625)
Q Consensus 12 ~~~~~~~~p~~----~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~- 86 (625)
|++...|.+.. ++++|+|++|||||||.|||||+++.+ .+|+++||+||+||+|++++|||+||+||+..|++.
T Consensus 17 W~~~~~f~~~~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~-~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~ 95 (967)
T 1wz2_A 17 WLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYT-IPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIK 95 (967)
T ss_dssp HHHHTTTSCCGGGSCGGGCCBEEECCCBCSSCCBHHHHHHHH-HHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHH
T ss_pred HHhCCCcccCccccCCCCcEEEEeCCCCCCCCcchhhhHHHH-HHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhh
Confidence 44444555432 226899999999999999999999965 599999999999999999999999999999988652
Q ss_pred --------------C---------CCHHHHHHHHHHHHHHHHhhcCcccc--cccCCCC--hhHHHHHHHHHHHHHHCCC
Q 006917 87 --------------N---------CTTQQICDKYYAIHKAVYNWFNISFD--EFGRTST--PQQTEICQAIFKKLLENNW 139 (625)
Q Consensus 87 --------------g---------~~~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~--~~~~~~v~~~~~~L~~~G~ 139 (625)
| ..|+++++++...++++|++||+++| +.+.|++ +.|.+.++++|.+|+++|+
T Consensus 96 ~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGl 175 (967)
T 1wz2_A 96 NRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGY 175 (967)
T ss_dssp TTCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTC
T ss_pred ccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCC
Confidence 2 36899999999999999999999988 5678999 9999999999999999999
Q ss_pred EEEeeeeeeeeCCCCccccccccccC-----------------------------CCC-----------Ccc--------
Q 006917 140 LSEYTTQQLYCDTCKRFLADRLVEGS-----------------------------CPT-----------LGC-------- 171 (625)
Q Consensus 140 iy~~~~~~~y~~~~~~~l~~~~v~g~-----------------------------cp~-----------~~c-------- 171 (625)
||++..+++||+.|+++|++.+|+.. .|+ +.|
T Consensus 176 iyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~ 255 (967)
T 1wz2_A 176 IVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVR 255 (967)
T ss_dssp EEECCCCCEECTTTSCBCCSSSCSSCCCCCEECCEEEEEECCCSSSCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEE
T ss_pred EEEeceEecccCCCCCCcchhhhccCCCceeceeEEEEEEecCCCCceEEEEEcCCchHhhhheEEEECCCCcEEEEEec
Confidence 99999999999999999999987421 111 000
Q ss_pred c--------------------------------c-----------------------------------------CC---
Q 006917 172 N--------------------------------Y-----------------------------------------DS--- 175 (625)
Q Consensus 172 ~--------------------------------~-----------------------------------------~~--- 175 (625)
+ . +|
T Consensus 256 ~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~ 335 (967)
T 1wz2_A 256 RKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVA 335 (967)
T ss_dssp CSSCEEEEEEEHHHHHHHHHSSCEEEEEEECCSSTTSSCEEECSSSSCEEEEEECSSCCSSSTTSCEEECTTSCTTTTTT
T ss_pred CCCcceeeehHHHHHHHHHhhccCcEEEEEEEchhhcCCEEECCCCCCceEEEecccccCCCCcccEEeecCCCHHHHHH
Confidence 0 0 00
Q ss_pred ------------CCC--------------------------cccccc-------------------------CCCCCC--
Q 006917 176 ------------ARG--------------------------DQCEKC-------------------------GKLLNP-- 190 (625)
Q Consensus 176 ------------~~g--------------------------~~ce~c-------------------------g~~~~~-- 190 (625)
.+| +.|+.| |.+...
T Consensus 336 ~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~~g~~ 415 (967)
T 1wz2_A 336 LEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPY 415 (967)
T ss_dssp TSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCCSSSS
T ss_pred HHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEeccCc
Confidence 000 011111 111100
Q ss_pred -------------------------CccC-CCccccCCCccEEE-eccceeeecc--chHHHHHHHHHhCCCCCCCChhH
Q 006917 191 -------------------------TELK-DPRCKVCQATPKIR-DTDHLFLELP--LIKDKLEEYINKMSVSGSWSQNA 241 (625)
Q Consensus 191 -------------------------~~l~-~~~~~~~g~~~~~~-~~~~~f~~l~--~~~~~l~~~~~~~~~~~~~~~~~ 241 (625)
.++. .|+|+|||++++.+ .++|||++++ .+++.++++++++.+.| ...
T Consensus 416 ~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P---~~~ 492 (967)
T 1wz2_A 416 EGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILP---ETR 492 (967)
T ss_dssp CSSBHHHHTTTTHHHHHHHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEES---STT
T ss_pred CCcCHHHHHHHHHHHHHhCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeC---ccc
Confidence 0111 48999999999998 6999999998 49999999998876544 444
Q ss_pred HHHHHHHHhcCCCCcccccccCCCcccCCCC---C---CCceeeeeccccchHHHh------------------------
Q 006917 242 IQGTYAWLKDGLKPRCITRDLKWGVPVPHEK---F---KDKVFYVWFDAPIGYISI------------------------ 291 (625)
Q Consensus 242 ~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~---~---~~~viyvWfDa~~~yi~~------------------------ 291 (625)
++++.+|++ +++||||||++.||+|+|++. + .+.++|||+++..+++..
T Consensus 493 ~~~~~~~l~-~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~~~~g~~~~~l~~~~~d~~~~~~ 571 (967)
T 1wz2_A 493 RAQFEAIID-WLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEE 571 (967)
T ss_dssp HHHHHHHHH-SCCEECCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHTTTSC
T ss_pred cchHHHhhh-cccCeeeccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHHHHHhcCCChHHcCcccceeeccCc
Confidence 567889996 799999999999999999641 1 156899999887666541
Q ss_pred -----------ccCCC--------hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeeec
Q 006917 292 -----------TSCYT--------PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNY 352 (625)
Q Consensus 292 -----------~~~~~--------~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~~ 352 (625)
..+++ ++|+.||| .| +|++|+||++||+.++.++..++--..+.|+.+++||||+.
T Consensus 572 ~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P--~D---i~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~ 646 (967)
T 1wz2_A 572 FSEDKEKELEKKTGIPAEIIHEMKEEFEYWYP--LD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL 646 (967)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCS--CS---EEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE
T ss_pred cccCccccchhhcCCCHHHHhhhHHHHHhhCC--Ce---EEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee
Confidence 01121 23566774 57 99999999999999986655443211135699999999999
Q ss_pred CCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 006917 353 EAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGY 432 (625)
Q Consensus 353 ~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~ 432 (625)
+|+|||||+||+|+|.++++ .||+|++||||++.+++++|++|+.+.+... .+++++++|+++++...
T Consensus 647 ~G~KMSKS~GNvv~p~d~i~-~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~--~~~l~rl~n~~~~~~~~--------- 714 (967)
T 1wz2_A 647 EGQKMSKSKGNVLNFIDAIE-ENGADVVRLYIMSLAEHDSDFDWRRKEVGKL--RKQIERFYELISQFAEY--------- 714 (967)
T ss_dssp SSSCCCTTTCCCCBHHHHHH-TTCHHHHHHHHHHHCCTTCCEEECHHHHHHH--HHHHHHHHHHHHHHHSS---------
T ss_pred CCEEccccccCCCCHHHHHH-HhChHHHHHHHHhCCCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHhcC---------
Confidence 99999999999999999998 7999999999997799999999999998775 67788888888776421
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHhHHHHhccccccccCCHhhHHHHHHH
Q 006917 433 GSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIG-MSISSEGNAYLQESQFWKLYNEDQGSCSIVIRT 511 (625)
Q Consensus 433 ~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i-~~l~~~~N~y~~~~~pw~l~k~~~~~~~~~l~~ 511 (625)
. .|.. ......|+|+++.++.+++.+.++|++|+|+.|+..+ +.+++.+|+|++..++ .+. .++..+
T Consensus 715 ~--~~~~--~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~-----~~~---~~~~~~ 782 (967)
T 1wz2_A 715 E--VKGN--VELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEG-----RDD---EAKRYV 782 (967)
T ss_dssp C--CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTT-----CCC---HHHHHH
T ss_pred C--CCCc--ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccc-----hhH---HHHHHH
Confidence 0 1111 1245689999999999999999999999999999876 5888999999998763 111 245678
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHcCC
Q 006917 512 SVGLVYLLACLLEPFMPSFSLEVLKQLNV 540 (625)
Q Consensus 512 ~~~~l~~l~~ll~P~~P~~ae~i~~~Lg~ 540 (625)
+.++++.+++||+|||||+||+||++||.
T Consensus 783 l~~~l~~l~~LLaP~~P~~aEeiw~~L~~ 811 (967)
T 1wz2_A 783 LRTLADVWVRLMAPFTPHICEELWEKLGG 811 (967)
T ss_dssp HHHHHHHHHHHHTTTSHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhcCC
Confidence 88999999999999999999999999985
No 14
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=6.3e-75 Score=665.10 Aligned_cols=464 Identities=18% Similarity=0.269 Sum_probs=352.9
Q ss_pred cccCCCCCCC--CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCC
Q 006917 12 RNHRVAKLPV--PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCT 89 (625)
Q Consensus 12 ~~~~~~~~p~--~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~ 89 (625)
|.+...|.+. .++++|||+++||||||.|||||+++.+ .+|+++||+|++||+|++++|||+||+||+.+|.+.|++
T Consensus 38 W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~-~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~ 116 (880)
T 4arc_A 38 WDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYT-IGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTA 116 (880)
T ss_dssp HHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHH-HHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSC
T ss_pred HHhcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHH-HHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCC
Confidence 5556666654 3567899999999999999999999865 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCC
Q 006917 90 TQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCP 167 (625)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp 167 (625)
|+++++++.+.|+++|++||+++| ++++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+++|++.+|
T Consensus 117 p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev----- 191 (880)
T 4arc_A 117 PAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQV----- 191 (880)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhh-----
Confidence 999999999999999999999998 7889999999999999999999999999999999999999999998754
Q ss_pred CCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHH
Q 006917 168 TLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYA 247 (625)
Q Consensus 168 ~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 247 (625)
.+++|++||.+|+.++++||||++++|+++|+++++..+ .||.+++.+..+
T Consensus 192 --------------------------~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~---~wp~~v~~~~~~ 242 (880)
T 4arc_A 192 --------------------------IDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLD---HWPDTVKTMQRN 242 (880)
T ss_dssp -----------------------------------------CEEEEEECGGGGHHHHHHHGGGCT---TSCHHHHHHHHH
T ss_pred --------------------------hcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhcc---cccHHHHHHHHh
Confidence 346788899999999999999999999999998876542 122222211111
Q ss_pred H-------------------------------------------------------------------------------
Q 006917 248 W------------------------------------------------------------------------------- 248 (625)
Q Consensus 248 ~------------------------------------------------------------------------------- 248 (625)
|
T Consensus 243 wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 322 (880)
T 4arc_A 243 WIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKG 322 (880)
T ss_dssp HHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHHHHHTC----------------CE
T ss_pred hhccccceEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceeec
Confidence 1
Q ss_pred --------------------------------------------------------------------------------
Q 006917 249 -------------------------------------------------------------------------------- 248 (625)
Q Consensus 249 -------------------------------------------------------------------------------- 248 (625)
T Consensus 323 ~~~g~~~~~P~~~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ 402 (880)
T 4arc_A 323 VDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLF 402 (880)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBC
T ss_pred cccCcEEecCCCCCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceee
Confidence
Q ss_pred --------------------Hhc----------CCCCcccccccCCCcccCCCCC-------------------------
Q 006917 249 --------------------LKD----------GLKPRCITRDLKWGVPVPHEKF------------------------- 273 (625)
Q Consensus 249 --------------------l~~----------~l~d~~IsR~~~WGi~vP~~~~------------------------- 273 (625)
|++ .|+||||||||+||+|||.+.|
T Consensus 403 ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~v~yrlrDW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~ 482 (880)
T 4arc_A 403 NSGEFNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDG 482 (880)
T ss_dssp SSGGGTTCCHHHHHHHHHHHHHHTTSEEEEEEESCCCEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCS
T ss_pred cCcccCCCCHHHHHHHHHHHHHHcCCcceeEEEEcccceeeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCC
Confidence 110 2779999999999999997521
Q ss_pred -----------------------CCceeeeeccccchHHHhccC------CC-hhhHhhcCCCCCcceEEEEeecccchh
Q 006917 274 -----------------------KDKVFYVWFDAPIGYISITSC------YT-PDWEEWWKNPENVALYQFMGKDNAPFH 323 (625)
Q Consensus 274 -----------------------~~~viyvWfDa~~~yi~~~~~------~~-~~~~~~w~~p~d~~~i~~~GkD~~~fH 323 (625)
+.+||++||||.+-|+...-- +. +.++.|+ |.| +++.|.||...|
T Consensus 483 ~g~pl~~~~~w~~~~cpg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~--PvD---~yigG~EHailH 557 (880)
T 4arc_A 483 ITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWL--PVD---IYIGGIEHAIMH 557 (880)
T ss_dssp SSCHHHHSTTTTEEESSSSEEEECCCEECTTTGGGTHHHHTTSTTCCSSSCCHHHHHHHC--SEE---EEECCGGGTTTH
T ss_pred CCCchHhCccceeeccCCCcceeCCCcCCCcccCcHHHHhhcCCCccccccChHHHhccC--Cce---EeecchhhHHHH
Confidence 236899999998655543211 11 2355666 467 999999996555
Q ss_pred ---HhHHHHHhhcCCC--CccCcceEEeeeeee--------cCCc-----------------------------------
Q 006917 324 ---TVMFPSTLLGTEE--NWTLMKTISVTEYLN--------YEAG----------------------------------- 355 (625)
Q Consensus 324 ---~~~~pa~l~a~~~--~~~~~~~i~~hg~l~--------~~G~----------------------------------- 355 (625)
+-+|..+|..+|+ .-.|++++++||||+ .+|+
T Consensus 558 llyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~ 637 (880)
T 4arc_A 558 LLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGM 637 (880)
T ss_dssp HHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEE
T ss_pred HHHHHHHHHHHHHhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCcccccccc
Confidence 6678888877764 124779999999994 5666
Q ss_pred -cccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 006917 356 -KFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGS 434 (625)
Q Consensus 356 -KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~ 434 (625)
|||||+||+|+|.++++ +||+|++|||+++.+++++|++||.+.+... ..++++++|++.++...... .
T Consensus 638 eKMSKSkGNvVdP~diIe-kYGADalRl~ll~~~~~~~dl~~s~~~ie~a--~rfl~rlwn~~~~~~~~~~~------~- 707 (880)
T 4arc_A 638 SKMSKSKNNGIDPQVMVE-RYGADTVRLFMMFASPADMTLEWQESGVEGA--NRFLKRVWKLVYEHTAKGDV------A- 707 (880)
T ss_dssp EECCTTTTCCCCHHHHHH-HHCHHHHHHHHHHSSCTTSCEECCHHHHHHH--HHHHHHHHHHHHHHHHTCCC------C-
T ss_pred ccccCcCCCCCCHHHHHH-HcCchHHHHHHHhcCCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhcccc------c-
Confidence 99999999999999998 7999999999999779999999999999876 56888888888765442110 0
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhHHHHhccccccccCCHhhHHHHHHHHH
Q 006917 435 IIPDSPKADLHPSTKMLAEKISNHIDQYIEAME-KVKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSV 513 (625)
Q Consensus 435 ~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~-~~~~~~a~~~i~~l~~~~N~y~~~~~pw~l~k~~~~~~~~~l~~~~ 513 (625)
..+ .......|+|+++.++.+++.+.++|+ +|+|+.|+..|++|++.+|+|. +++. ....++.
T Consensus 708 ~~~---~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~~---------~~~~----~~~~~l~ 771 (880)
T 4arc_A 708 ALN---VDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP---------TDGE----QDRALMQ 771 (880)
T ss_dssp CCC---STTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSC---------CSSH----HHHHHHH
T ss_pred ccc---cccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhh---------ccch----HHHHHHH
Confidence 011 123457899999999999999999998 8999999999999998877641 1121 2245677
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHcCCC
Q 006917 514 GLVYLLACLLEPFMPSFSLEVLKQLNVP 541 (625)
Q Consensus 514 ~~l~~l~~ll~P~~P~~ae~i~~~Lg~~ 541 (625)
++++.+.+||+|||||+||+||+.||..
T Consensus 772 ~~l~~ll~LLaPf~PhiaEElW~~Lg~~ 799 (880)
T 4arc_A 772 EALLAVVRMLNPFTPHICFTLWQELKGE 799 (880)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHcCCC
Confidence 8889999999999999999999999864
No 15
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=1e-73 Score=660.93 Aligned_cols=462 Identities=19% Similarity=0.301 Sum_probs=374.9
Q ss_pred cccCCCCCCC---CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCC
Q 006917 12 RNHRVAKLPV---PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENC 88 (625)
Q Consensus 12 ~~~~~~~~p~---~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~ 88 (625)
|.+...|.+. .+++++||+++||||||.|||||+|+. +.+|+++||+|++||+|.+++|||+||+||+.+|++.|+
T Consensus 17 W~~~~~f~~~~~~~~~~k~~v~~~~Py~nG~lHiGHa~~~-~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~ 95 (878)
T 2v0c_A 17 WEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNY-TMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGV 95 (878)
T ss_dssp HHHHTTTCCCSCCC---EEEEEECCCCCSSCCBHHHHHHH-HHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTC
T ss_pred HHHcCCcccCcccCCCCCEEEECCCCCCCCCcchhhhHHH-HHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCC
Confidence 4444555543 345679999999999999999999995 559999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCC
Q 006917 89 TTQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSC 166 (625)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~c 166 (625)
+|.++++++.+.|+++|++||+++| ++++|+++.|...++++|.+|+++|+||++.++++||+.|+++|++.+|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~--- 172 (878)
T 2v0c_A 96 HPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVV--- 172 (878)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE---
T ss_pred CHHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHh---
Confidence 9999999999999999999999998 78899999999999999999999999999999999999999999998763
Q ss_pred CCCccccCCCCCccccccCCCCCCCccCCCcccc-CCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChh-----
Q 006917 167 PTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKV-CQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQN----- 240 (625)
Q Consensus 167 p~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~-~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~----- 240 (625)
++.|++ ||++++.++++||||++++|+++|++++++.+ ||.+
T Consensus 173 ----------------------------~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~----~p~~~~~~~ 220 (878)
T 2v0c_A 173 ----------------------------EGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLN----WPEKVKAMQ 220 (878)
T ss_dssp ----------------------------TTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCB----SCHHHHHHH
T ss_pred ----------------------------cCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcC----CCHHHHHHH
Confidence 346777 89999999999999999999998887664321 1111
Q ss_pred --------------------------------------------------------------------------------
Q 006917 241 -------------------------------------------------------------------------------- 240 (625)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (625)
T Consensus 221 ~~wi~~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (878)
T 2v0c_A 221 RAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGR 300 (878)
T ss_dssp HHHHCEEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSS
T ss_pred HHHhccccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006917 241 -------------------------------------------------------------------------------- 240 (625)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (625)
T Consensus 301 ~~~G~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~ 380 (878)
T 2v0c_A 301 EKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEP 380 (878)
T ss_dssp CCCCEEEEEEEECTTTCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSC
T ss_pred eeeeEecCcEEECCCCCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCC
Confidence
Q ss_pred ----------------HHHHHHHHHhc----------CCCCcccccccCCCcccCCCCC---------------------
Q 006917 241 ----------------AIQGTYAWLKD----------GLKPRCITRDLKWGVPVPHEKF--------------------- 273 (625)
Q Consensus 241 ----------------~~~~~~~~l~~----------~l~d~~IsR~~~WGi~vP~~~~--------------------- 273 (625)
++..+.++|.+ .|+||||||||.||+|||.+.+
T Consensus 381 g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~ 460 (878)
T 2v0c_A 381 GIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLK 460 (878)
T ss_dssp CEECSSGGGTTCBHHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCC
T ss_pred eeEecCCCCCCcCHHHHHHHHHHHHHHCCCCCCceEEecccchhhcccccCCcccEEEECCCCeEecCHHHccccccchh
Confidence 11122223321 4689999999999999997411
Q ss_pred ---------------------------------CCceeeeeccccchHHHhcc-C-----CC-hhhHhhcCCCCCcceEE
Q 006917 274 ---------------------------------KDKVFYVWFDAPIGYISITS-C-----YT-PDWEEWWKNPENVALYQ 313 (625)
Q Consensus 274 ---------------------------------~~~viyvWfDa~~~yi~~~~-~-----~~-~~~~~~w~~p~d~~~i~ 313 (625)
+.+||+|||||.+.|+.... . +. ++++.|| |.| ++
T Consensus 461 ~~~~~~~~g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~--P~D---~y 535 (878)
T 2v0c_A 461 DVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWM--PVD---QY 535 (878)
T ss_dssp CHHHHSCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHHHTSHHHHTTSTTCSSSSCCHHHHHHHC--SBS---EE
T ss_pred hhhccccCCCChhhhhHhhcCCcCCCCCCcceeccccccccccccchhhhccCccccccccCHHHHccCC--CCe---EE
Confidence 12789999999765553221 0 11 3466677 467 99
Q ss_pred EEeecccch---hHhHHHHHhhcCCC--CccCcceEEeeeeeec------------------------------------
Q 006917 314 FMGKDNAPF---HTVMFPSTLLGTEE--NWTLMKTISVTEYLNY------------------------------------ 352 (625)
Q Consensus 314 ~~GkD~~~f---H~~~~pa~l~a~~~--~~~~~~~i~~hg~l~~------------------------------------ 352 (625)
+.|+||... |+-+|..+|..+|+ .-.|++++++|||+.-
T Consensus 536 i~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (878)
T 2v0c_A 536 IGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDV 615 (878)
T ss_dssp ECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHH
T ss_pred EechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhcc
Confidence 999998643 56678888877663 1247899999999852
Q ss_pred -----------CC-------ccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHH
Q 006917 353 -----------EA-------GKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLG 414 (625)
Q Consensus 353 -----------~G-------~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~ 414 (625)
+| +|||||+||+|+|.++++ .||+|++|||+++.+++++|++||++.+... .++.++++
T Consensus 616 ~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~-~yGADalRl~ll~~~~~~~D~~fs~~~v~~~--~~~l~Rl~ 692 (878)
T 2v0c_A 616 RKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVK-EQGADIARITILFAAPPENEMVWTEEGVQGA--WRFLNRIY 692 (878)
T ss_dssp HHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHH-HSCHHHHHHHHHHHSCTTSCEEECHHHHHHH--HHHHHHHH
T ss_pred ccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHH-HcCccHHHHHHhccCCCCCCceeCHHHHHHH--HHHHHHHH
Confidence 89 899999999999999998 7999999999999889999999999999876 56788888
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhccc
Q 006917 415 NFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQF 494 (625)
Q Consensus 415 n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~p 494 (625)
|++......+.. ..+ .++. ......|+|+++.++.+++.+.++|++|+|+.|+..|++|++.+|+|.+..
T Consensus 693 n~~~~~~~~~~~----~~~-~~~~---~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k~~~~~-- 762 (878)
T 2v0c_A 693 RRVAEDREALLE----TSG-VFQA---EALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDR-- 762 (878)
T ss_dssp HHHHHHHHHHHT----CCC-CCCG---GGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhcccc----ccc-ccCc---ccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhhcccc--
Confidence 877655443211 000 1111 124578999999999999999999999999999999999999999997541
Q ss_pred cccccCCHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcC
Q 006917 495 WKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLN 539 (625)
Q Consensus 495 w~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~Lg 539 (625)
.. + .++.++++.+++||+|||||+||+||++||
T Consensus 763 ------~~---~---~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg 795 (878)
T 2v0c_A 763 ------PV---T---PVYRTAIRYYLQMLFPFAPHLAEELWHWFW 795 (878)
T ss_dssp ------CS---C---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHC
T ss_pred ------hh---H---HHHHHHHHHHHHHHcccchHHHHHHHHHcC
Confidence 11 1 456788999999999999999999999998
No 16
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=4.5e-57 Score=488.35 Aligned_cols=362 Identities=16% Similarity=0.131 Sum_probs=275.2
Q ss_pred CCcccccCCCCCCCC-CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHc
Q 006917 8 PDGERNHRVAKLPVP-GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE 86 (625)
Q Consensus 8 ~~~~~~~~~~~~p~~-~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~ 86 (625)
=|++++++++|+|.. ++.++|||+ |+|+|++||||+|++ |.+|+++||+|++||+|.|++|+||+|+||+.+|++.
T Consensus 5 ynt~t~~~~~f~p~~~~~v~~yv~g--Pt~y~~~HiGHar~~-v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~ 81 (461)
T 1li5_A 5 FNTLTRQKEEFKPIHAGEVGMYVCG--ITVYDLCHIGHGRTF-VAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN 81 (461)
T ss_dssp EETTTTEEEECCCSSTTEEEEEECC--CBSSSCCBHHHHHHH-HHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHT
T ss_pred EeCCCCCccccccCCCCCeeEEEcC--CcCCCCCcccccHHH-HHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHc
Confidence 489999999999974 444566664 566699999999985 6699999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCccc-ccccCCCChhHHHHHHHHHHHHHHCCCEEEe-eeeeeeeCCCCcccccccccc
Q 006917 87 NCTTQQICDKYYAIHKAVYNWFNISF-DEFGRTSTPQQTEICQAIFKKLLENNWLSEY-TTQQLYCDTCKRFLADRLVEG 164 (625)
Q Consensus 87 g~~~~~~~~~~~~~~~~~~~~lgi~~-D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~-~~~~~y~~~~~~~l~~~~v~g 164 (625)
|.+|+++++++.+.|++++++|||.+ |.|++++ +|...+++++++|.++|++|++ .+.+|||+++...
T Consensus 82 g~~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t--~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~~~-------- 151 (461)
T 1li5_A 82 GESFVAMVDRMIAEMHKDFDALNILRPDMEPRAT--HHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPT-------- 151 (461)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGG--GCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTT--------
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCccccccc--chHHHHHHHHHHHHHCCCEEEecCCCEEEecccccc--------
Confidence 99999999999999999999999997 7888887 4999999999999999999999 8999999885321
Q ss_pred CCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCC-CCCCCChhHHH
Q 006917 165 SCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMS-VSGSWSQNAIQ 243 (625)
Q Consensus 165 ~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~ 243 (625)
|| +.||+.+ .++. +|++++... .++++ .+..|...
T Consensus 152 ------------yg---~lsg~~~--~~l~------~g~rv~~~~------------------~k~~p~Df~lwk~~--- 187 (461)
T 1li5_A 152 ------------YG---VLSRQDL--DQLQ------AGARVDVVD------------------DKRNPMDFVLWKMS--- 187 (461)
T ss_dssp ------------TT---TTTTC------------------------------------------CCSTTCEEEEEEC---
T ss_pred ------------cc---cccCCCH--HHhh------cCCcccchh------------------cccCccceEEEccC---
Confidence 22 2345422 1221 133222110 11111 11112110
Q ss_pred HHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccchh
Q 006917 244 GTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFH 323 (625)
Q Consensus 244 ~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH 323 (625)
.+-.+++..+||+++|+| +++.. ..+.+||..+.| ||++|+|++|||
T Consensus 188 ----------~~g~~~w~s~WG~g~PgW----------hiecs----------am~~~~lg~~~d---ih~gG~Dl~fpH 234 (461)
T 1li5_A 188 ----------KEGEPSWPSPWGAGRPGW----------HIECS----------AMNCKQLGNHFD---IHGGGSDLMFPH 234 (461)
T ss_dssp ----------CTTSCCBCCTTCSEEECS----------SHHHH----------HHHHHHHCSSEE---EEECBGGGTTTH
T ss_pred ----------CCCCCcccCCCCCcCCCc----------cchhH----------HHHHHHhCCCce---EEeccCccCchH
Confidence 011246678999999975 33211 123456654455 999999999999
Q ss_pred HhHHHHHhhcC-CCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHH
Q 006917 324 TVMFPSTLLGT-EENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQ 402 (625)
Q Consensus 324 ~~~~pa~l~a~-~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~ 402 (625)
+++|||+++++ |. ++++.+++||||+++|+|||||+||+|+|.|+++ .||+|++|||+++ +++++|++||++.+.
T Consensus 235 ~~~~~aq~~a~~g~--~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~-~~g~dalR~~ll~-~~~~~~~~fs~~~l~ 310 (461)
T 1li5_A 235 HENEIAQSTCAHDG--QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLK-YYDAETVRYFLMS-GHYRSQLNYSEENLK 310 (461)
T ss_dssp HHHHHHHHHHHSSS--CCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHT-TSCHHHHHHHHHS-SCTTSCEEECHHHHH
T ss_pred HHHHHHHHHHhcCC--CCCcEEEEeeEEEECCeEccccCCCccChhHHhh-hCCHHHHHHHHHc-CCcCCCCCCCHHHHH
Confidence 99999999986 64 4667777789999999999999999999999998 7999999999998 789999999999998
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHH
Q 006917 403 AKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAM-EKVKLKQGLRIGMSI 481 (625)
Q Consensus 403 ~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~~a~~~i~~l 481 (625)
+.. |.+.|+.+++.+ .++.++ . | .+..+.+.+.++| ++|+++.|+..|++|
T Consensus 311 ~~~---------~~l~rl~n~~~~-----~~~~~~-----~----d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l 362 (461)
T 1li5_A 311 QAR---------AALERLYTALRG-----TDKTVA-----P----A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDM 362 (461)
T ss_dssp HHH---------HHHHHHHHHHTT-----CCTTSC-----C----C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHH
T ss_pred HHH---------HHHHHHHHHHHH-----hhcCCC-----H----H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 763 224444444433 111111 0 1 2455677899999 899999999999999
Q ss_pred HHHHhHHHHh
Q 006917 482 SSEGNAYLQE 491 (625)
Q Consensus 482 ~~~~N~y~~~ 491 (625)
++.+|+|++.
T Consensus 363 ~~~~N~~~~~ 372 (461)
T 1li5_A 363 AREVNRLKAE 372 (461)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 17
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=7.3e-56 Score=474.43 Aligned_cols=375 Identities=17% Similarity=0.183 Sum_probs=252.0
Q ss_pred CCCcccccCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccC----------cccc
Q 006917 7 EPDGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGT----------DEYG 76 (625)
Q Consensus 7 ~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~----------D~~G 76 (625)
.-|++++++++|+|.. ..++|| ++|||||.+||||+|+ +|.+|+++||+|++||+|.|++|+ |+||
T Consensus 26 lyntltr~ke~f~p~~-~v~~Yv--cgPTvYg~~HIGHar~-~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~Dehd 101 (501)
T 3sp1_A 26 LYNTRTKDFSELTNFE-NVKVYA--CGPTVYNYAHIGNFRT-YIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGE 101 (501)
T ss_dssp EEETTTTEEEEECCCS-CEEEEE--CCCBCSSCCCHHHHHH-HHHHHHHHHHHHHHTCCEEEEEEEBCSCCC--------
T ss_pred EEECCCCccccccccC-cceEEe--CCCcCCCCcchhhhHH-HHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCC
Confidence 3489999999999977 444554 4578889999999998 566999999999999999999654 6669
Q ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCcc
Q 006917 77 TATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRF 156 (625)
Q Consensus 77 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~ 156 (625)
+||+.+|++.|++|+++++++.+.|++++++|||++|.+++ ++++|...++++|++|+++|+||++.+.+|||+++-.
T Consensus 102 dKI~~~A~~~g~~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~-~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f~- 179 (501)
T 3sp1_A 102 DKVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKVL-VASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFK- 179 (501)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHTTCCCCSEEE-EGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGCT-
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCccc-CcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCccC-
Confidence 99999999999999999999999999999999999998764 5689999999999999999999999999999998632
Q ss_pred ccccccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCC-CCC
Q 006917 157 LADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMS-VSG 235 (625)
Q Consensus 157 l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~ 235 (625)
.||.. +|+.+. .++ .+|..++.... ++++ .+.
T Consensus 180 -------------------~yG~l---s~~~~~-~~~------~~g~r~~~~~~------------------K~~p~Df~ 212 (501)
T 3sp1_A 180 -------------------SYGEM---AGIDLI-DKD------MTLPRVDVDKF------------------KRNKTDFV 212 (501)
T ss_dssp -------------------TTTTT---TC------------------------C------------------CSSTTCEE
T ss_pred -------------------Ccccc---CCCChh-hhh------ccCCccCcccc------------------cCCchhhH
Confidence 23321 111110 011 12322221111 1111 111
Q ss_pred CCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEE
Q 006917 236 SWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFM 315 (625)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~ 315 (625)
.|.+. ..-++-.++...+||...|+| +|-+ .....++|+.+.| ||++
T Consensus 213 lWk~~----------p~~~~~~~~W~spwG~GrPGW----------------hiEc----sam~~~~lg~~~D---IH~g 259 (501)
T 3sp1_A 213 LWFTN----------SKFKDQEMKWDSPWGFGYPSW----------------HLEC----AAMNLEYFKDALD---IHLG 259 (501)
T ss_dssp EEEEC----------CC-----CCBCCTTCSEEECH----------------HHHH----HHHHHHHTTTCCC---EEEE
T ss_pred hcCCC----------CCCCCCCceecCCCCCCCCCc----------------hHHH----HHHHHHHcCCCce---EEee
Confidence 12110 000011123467899999977 2321 2345678877778 9999
Q ss_pred eecccchhHhHHHHHhhcCCCCccCcceEEee-eeeecCCccccccCCcccCchhhhhcC-CCchhHHHHHHhcCCCCCC
Q 006917 316 GKDNAPFHTVMFPSTLLGTEENWTLMKTISVT-EYLNYEAGKFSKSKGVGVFGNDVKDTN-IPAEVWRYYLITNRPEVSD 393 (625)
Q Consensus 316 GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~h-g~l~~~G~KMSKS~GN~I~~~d~l~~~-~g~D~lR~~ll~~~~~~~d 393 (625)
|+|++|||+.+|+|+.+++... ++.++++| |||+++|+|||||+||+|+|.++++ . ||+|++||||++ .++++|
T Consensus 260 G~DLifpHheneiAqs~a~~g~--~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~-~gyg~d~lR~~lls-~~yr~~ 335 (501)
T 3sp1_A 260 GVDHIGVHHINEIAIAECFLNK--KWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLED-QNFSPLDFRYLCLT-SHYRNQ 335 (501)
T ss_dssp EGGGTTTHHHHHHHHHHHHHTS--CCCSEEEEECCEECC----------CCCHHHHHH-TTCCHHHHHHHHHT-SCTTSC
T ss_pred ccccccchHHHHHHHHHHccCC--CCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHh-cCCCHHHHHHHHHh-ccCCCC
Confidence 9999999999999999987543 45566666 9999999999999999999999998 6 999999999998 589999
Q ss_pred CCcCHHHHHHHHhH--HHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-Hhcc
Q 006917 394 TLFTWEDFQAKLNT--ELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAM-EKVK 470 (625)
Q Consensus 394 ~~fs~~~~~~~~n~--~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~ 470 (625)
++||++.+.++.+. +|.++|+|+++|+........ ...+. . . . ...+..+.+.+.++| ++|+
T Consensus 336 l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~--~~~~~--~---~-~-------~~~~~~~~~~f~~am~dDln 400 (501)
T 3sp1_A 336 LKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTL--NKDLK--N---F-G-------FSVEKEYYDSFVEKISFDLN 400 (501)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHH--HSCTT--S---C-S-------SHHHHHHHHHHHHHHHBTSC
T ss_pred CccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccc--ccccc--c---h-h-------hhhHHHHHHHHHHHHHhccC
Confidence 99999999988766 678899998887543322100 00000 0 0 0 112345667889999 5999
Q ss_pred HHHHHHHHHHHHHHHh
Q 006917 471 LKQGLRIGMSISSEGN 486 (625)
Q Consensus 471 ~~~a~~~i~~l~~~~N 486 (625)
++.|+..|+++++.+|
T Consensus 401 t~~al~~l~~~~~~~~ 416 (501)
T 3sp1_A 401 VAQGLALLWEIIKSDN 416 (501)
T ss_dssp HHHHHHHHHHHHHCSS
T ss_pred cHHHHHHHHHHHHHhc
Confidence 9999999999998764
No 18
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.3e-55 Score=470.54 Aligned_cols=353 Identities=13% Similarity=0.106 Sum_probs=257.3
Q ss_pred CcccccCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCC
Q 006917 9 DGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENC 88 (625)
Q Consensus 9 ~~~~~~~~~~~p~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~ 88 (625)
|++++++++|+| +++.++|+| .|||||++||||+|++ +.+|+++||+|++||+|.+++|+||||+||+.+|++.|+
T Consensus 25 nt~~~~~~~f~p-~~~v~~y~~--gPt~yg~~HiGHar~~-v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~ 100 (414)
T 3c8z_A 25 DSADRQVRPVTP-GPTATMYVC--GITPYDATHLGHAATY-LTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGI 100 (414)
T ss_dssp ETTTTEEEECCC-CSEEEEEEC--CCCTTSCCBHHHHHHH-HHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTC
T ss_pred eeccCCcccccC-CCCceEEeC--CCcCCCCcCccccHHH-HHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCC
Confidence 899999999999 554445544 5788899999999985 669999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcc-cccccCCCChhHHHHHHHHHHHHHHCCCEEEee----eeeeeeCCCCccccccccc
Q 006917 89 TTQQICDKYYAIHKAVYNWFNIS-FDEFGRTSTPQQTEICQAIFKKLLENNWLSEYT----TQQLYCDTCKRFLADRLVE 163 (625)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~lgi~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~----~~~~y~~~~~~~l~~~~v~ 163 (625)
+|+++++++.+.|++++++|||+ +|.|++|++ |...++++|++|.++|++|++. ..+||+.+.-.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~~-------- 170 (414)
T 3c8z_A 101 DWRTLGDRETQLFREDMAALRVLPPHDYVAATD--AIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATA-------- 170 (414)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGG--CHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSST--------
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCcceecccc--hHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhhh--------
Confidence 99999999999999999999998 999998875 8899999999999999999877 45555443100
Q ss_pred cCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHH
Q 006917 164 GSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQ 243 (625)
Q Consensus 164 g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (625)
.||+ .|+. -.+.+..++.+....+.
T Consensus 171 -------------------~~g~-------------l~~~----------------~~~~~~~~~~~~~~~~~------- 195 (414)
T 3c8z_A 171 -------------------QFGY-------------ESGY----------------DRDTMLTLFAERGGDPD------- 195 (414)
T ss_dssp -------------------TTTT-------------TTCC----------------CHHHHHHHHHHTTCCTT-------
T ss_pred -------------------hhHh-------------hcCC----------------CHHHHHHHHhhcccccc-------
Confidence 0110 0010 01222222211100000
Q ss_pred HHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCC----hhhHhhcCCCCCcceEEEEeecc
Q 006917 244 GTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYT----PDWEEWWKNPENVALYQFMGKDN 319 (625)
Q Consensus 244 ~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~----~~~~~~w~~p~d~~~i~~~GkD~ 319 (625)
...+....|+ ..||+++|++ + .| ||++|+- ..+|. ..+.+||..|.| +|++|+||
T Consensus 196 ---~~~k~~~~D~-----~lWk~~~pg~--~-----~W-da~~g~g--~pgWhiec~a~~~~~~g~~~d---i~~~G~D~ 254 (414)
T 3c8z_A 196 ---RPGKSDQLDA-----LLWRAERPGE--P-----SW-PSPFGRG--RPGWHVECSAIALTRIGTGLD---IQGGGSDL 254 (414)
T ss_dssp ---CTTCSSTTCE-----EEEEECCTTS--C-----CB-CCTTCSE--EECHHHHHHHHHHHHTCSCEE---EEEEEGGG
T ss_pred ---ccccCCcchh-----hhcCCCCCCC--C-----CC-CCCCCCC--CCCccchhHHHHHHhcCCCce---EEEecccc
Confidence 0000011121 3499999864 1 38 8876542 11221 235677865666 99999999
Q ss_pred cchhHhHHHHHhhcC-CCCccCcceEEee-eeeecCCccccccCCcccCchhhhhcC-CCchhHHHHHHhcCCCCCCCCc
Q 006917 320 APFHTVMFPSTLLGT-EENWTLMKTISVT-EYLNYEAGKFSKSKGVGVFGNDVKDTN-IPAEVWRYYLITNRPEVSDTLF 396 (625)
Q Consensus 320 ~~fH~~~~pa~l~a~-~~~~~~~~~i~~h-g~l~~~G~KMSKS~GN~I~~~d~l~~~-~g~D~lR~~ll~~~~~~~d~~f 396 (625)
++||+++||++++++ |. +++.++++| |||+++|+|||||+||+|+|.++++ . ||+|++||||++ +++.+|++|
T Consensus 255 ~~~H~~~~~a~~~a~~g~--~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~-~g~g~D~lR~~ll~-~~~~~d~~f 330 (414)
T 3c8z_A 255 IFPHHEYSAAHAESVTGE--RRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRA-QGVDPSAIRLGLFS-GHYREDRFW 330 (414)
T ss_dssp TTTHHHHHHHHHHHHHCC--SCSEEEEEEECCBC-------------CBHHHHHH-TTCCHHHHHHHHHT-SCTTSCBCC
T ss_pred ccHHHHHHHHHHHHhcCC--CCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhh-ccCCcchheeEEEe-cCcCCCCCc
Confidence 999999999999997 54 366777777 8999999999999999999999998 6 999999999999 899999999
Q ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-HhccHHHHH
Q 006917 397 TWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAM-EKVKLKQGL 475 (625)
Q Consensus 397 s~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~~a~ 475 (625)
|++.+.++.| ..++++|+++|+ ++ + . +..+.+.+.++| ++|++++|+
T Consensus 331 s~~~l~~~~~--~l~~l~n~~~~~------------~~--~-----~-----------~~~~~~~v~~a~~d~~~~~~Al 378 (414)
T 3c8z_A 331 SNEVLDEANA--RLARWRSATALP------------EA--P-----D-----------ATDVIARVRQYLADDLDTPKAL 378 (414)
T ss_dssp CHHHHHHHHH--HHHHHHHHHTSS------------CB--S-----C-----------CHHHHHHHHHHHHBTCCHHHHH
T ss_pred CHHHHHHHHH--HHHHHHHHHHhc------------cc--h-----h-----------HHHHHHHHHHHHHhcCCHHHHH
Confidence 9999998744 467888876543 11 1 0 134567888999 799999999
Q ss_pred HHHHHHHHHHhH
Q 006917 476 RIGMSISSEGNA 487 (625)
Q Consensus 476 ~~i~~l~~~~N~ 487 (625)
..|++|++.+|+
T Consensus 379 ~~i~~~~~~~n~ 390 (414)
T 3c8z_A 379 AALDGWCTDALS 390 (414)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999998
No 19
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=3.4e-53 Score=452.36 Aligned_cols=365 Identities=17% Similarity=0.172 Sum_probs=269.2
Q ss_pred CCCCcccccCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHH
Q 006917 6 QEPDGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAME 85 (625)
Q Consensus 6 ~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~ 85 (625)
..-|++++++++|.|..++ ++.+..++|||||.+||||+|+ +|.+|+++||+|++||+|.|++|+||||+||+.+|++
T Consensus 6 ~~yntlt~~ke~f~p~~~~-~v~~YvcGPtvy~~~HIGHaR~-~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~ 83 (462)
T 3tqo_A 6 KIFNSLTKQKEIFKPIESG-KVKLYVCGMTVYDYMHIGHGRS-WIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGE 83 (462)
T ss_dssp EEEETTTTEEEECCCSSTT-EEEEEECCCBTTSCCBHHHHHH-HHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHH
T ss_pred EEEEcCCCceeccccCCCC-eEEEEeCCCcCCCCCchhhhHH-HHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHH
Confidence 4458999999999997543 3555566789999999999998 5669999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcCccccccc-CCCChhHHHHHHHHHHHHHHCCCEEEe-eeeeeeeCCCCccccccccc
Q 006917 86 ENCTTQQICDKYYAIHKAVYNWFNISFDEFG-RTSTPQQTEICQAIFKKLLENNWLSEY-TTQQLYCDTCKRFLADRLVE 163 (625)
Q Consensus 86 ~g~~~~~~~~~~~~~~~~~~~~lgi~~D~~~-~t~~~~~~~~v~~~~~~L~~~G~iy~~-~~~~~y~~~~~~~l~~~~v~ 163 (625)
.|++|+++++++.+.|++++++|||++|.+. +++ +|...++++|++|+++|++|++ .+.+|||+++...++
T Consensus 84 ~g~~~~e~a~~~~~~f~~d~~~LgI~~d~~~praT--e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~yg----- 156 (462)
T 3tqo_A 84 NKESPAALAERFIQILHEDEKALRVLSPDQEPRAT--QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYG----- 156 (462)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGG--GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTTTT-----
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCCCCCccccChh--hHHHHHHHHHHHHHHCCCEEEecCCcEEeccccccccc-----
Confidence 9999999999999999999999999998664 544 8999999999999999999999 689999998754332
Q ss_pred cCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCC-CCCCCChhHH
Q 006917 164 GSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMS-VSGSWSQNAI 242 (625)
Q Consensus 164 g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~ 242 (625)
.. +++. ..++. .|..+..... ++++ .+.-|...
T Consensus 157 ---------------~L---s~~~--~~~~~------~g~r~~~~~~------------------K~~p~DF~LWK~~-- 190 (462)
T 3tqo_A 157 ---------------KL---SHRH--LDELQ------AGARVEVSDS------------------KRDPLDFVLWKKA-- 190 (462)
T ss_dssp ---------------TT---TTCS--CC------------------C------------------CSSTTCEEEEEEC--
T ss_pred ---------------cc---cCCC--hHHhh------ccCccccccc------------------cCCccccceeeec--
Confidence 11 0110 01111 1221111000 0111 01112210
Q ss_pred HHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccch
Q 006917 243 QGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPF 322 (625)
Q Consensus 243 ~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~f 322 (625)
+.|.+ +.+.+||...|+|. |-+ .....++...+.| ||.+|.|++||
T Consensus 191 -------k~~ep----~W~spwG~GrPGWH----------------iEc----sam~~~~lG~~~d---ih~gG~Dl~Fp 236 (462)
T 3tqo_A 191 -------KPGEP----KWDSPWGEGRPGWH----------------IEC----SAMSSSILGQPFD---IHGGGLDLKFP 236 (462)
T ss_dssp -------CTTSC----CBCCTTCSEEECHH----------------HHH----HHHHHHHHCSSEE---EEEEEGGGTTT
T ss_pred -------CCCCC----cccCCCCCCCCCCc----------------eeh----HHHHHHhcCCCeE---EEccccccccH
Confidence 11222 34678999999883 221 1122233332455 99999999999
Q ss_pred hHhHHHHHhhcCCCCccCcceEEeeeeeecCCccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHH
Q 006917 323 HTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQ 402 (625)
Q Consensus 323 H~~~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~ 402 (625)
|+....|+..++... +.++.++++|+|+++|+|||||+||+|++.|+++ .||+|++|||+++ +++.++++||++.+.
T Consensus 237 Hheneiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~-~~g~dalR~~lls-~~yr~~l~fs~~~l~ 313 (462)
T 3tqo_A 237 HHENEIAQSEAGEEK-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALK-ESDVEVLRYFLLS-GHYRNPLSYSKENLE 313 (462)
T ss_dssp HHHHHHHHHHHHHSS-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHH-HSCHHHHHHHHHH-SCTTSCEEECHHHHH
T ss_pred HHHhHHHHHHHHcCC-CcceEEEEccEEecCCcCccccCCCcccHHHHHh-hcChHHhhhhhcc-CCCCCCcCcCHHHHH
Confidence 999999998876432 3445556668999999999999999999999998 7999999999998 688999999999998
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHH
Q 006917 403 AKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAM-EKVKLKQGLRIGMSI 481 (625)
Q Consensus 403 ~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~~a~~~i~~l 481 (625)
++ ....++++|+++++ .. ..+ ..+..+.+.+.++| ++|+++.|+..|+++
T Consensus 314 ~a--~~~l~rl~~~~~~~----~~--------~~~---------------~~~~~~~~~~~~a~~dD~nt~~a~~~l~~~ 364 (462)
T 3tqo_A 314 NG--RLALERFYLALRGL----PV--------VNH---------------EKTSSYTDRFYEAMDDDFNTPIAFALLFEM 364 (462)
T ss_dssp HH--HHHHHHHHHHHTTC----CC-----------------------------CHHHHHHHHHHTBTCCHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHh----hh--------ccc---------------hhHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 76 34555555554321 10 000 01234566888999 599999999999999
Q ss_pred HHHHhHHHHh
Q 006917 482 SSEGNAYLQE 491 (625)
Q Consensus 482 ~~~~N~y~~~ 491 (625)
++.+|.+++.
T Consensus 365 ~~~~n~~~~~ 374 (462)
T 3tqo_A 365 VREINRFRDN 374 (462)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHhhhhcc
Confidence 9999998754
No 20
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=1.3e-45 Score=411.37 Aligned_cols=369 Identities=13% Similarity=0.038 Sum_probs=264.3
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHH------------------------
Q 006917 26 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATET------------------------ 81 (625)
Q Consensus 26 ~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~------------------------ 81 (625)
++.|+.+.|||||++||||+|++ |.+|+++|++++.||+|.++..++|.|.++-.
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~-iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~ 182 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNI-ALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGR 182 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHH-HHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHH-HHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHH
Confidence 68999999999999999999996 55999999999999999999877777643311
Q ss_pred ----------------------HHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHHCCC
Q 006917 82 ----------------------KAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNW 139 (625)
Q Consensus 82 ----------------------~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~ 139 (625)
.+.+.|. .+++++.+.+.|++++++|||++|.|.+|++..|...+++++++|.++|+
T Consensus 183 ~y~~~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~ 261 (592)
T 1iq0_A 183 AYVRLHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPH 261 (592)
T ss_dssp HHHHHHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCC
Confidence 1133454 38999999999999999999999999999988889999999999999999
Q ss_pred EEE---eeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeee
Q 006917 140 LSE---YTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLE 216 (625)
Q Consensus 140 iy~---~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~ 216 (625)
+|+ +.+.++||..++.+..+ .++ |..++.++...+...
T Consensus 262 ~y~~~~g~~~G~~~~~~~~~g~~-------------------------------~~l--------~~~vi~ksdG~~~Y~ 302 (592)
T 1iq0_A 262 VFRPREGKYAGALVMDASPVIPG-------------------------------LED--------PFFVLLRSNGTATYY 302 (592)
T ss_dssp EECCSSSTTTTCEEEECTTTSCS-------------------------------CSC--------CEEEEECTTSCBCHH
T ss_pred cccCcccCcCCCEEEechhcCCC-------------------------------CCC--------CceEEEecCCceEEe
Confidence 994 23445555544333111 010 122333333322111
Q ss_pred ccchHHHHHHHHHhCC------CCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHH
Q 006917 217 LPLIKDKLEEYINKMS------VSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYIS 290 (625)
Q Consensus 217 l~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~ 290 (625)
... +...+.+.. ..+.|... .+.+.| ..||+++|.. ..+++||||.+.+.+|+.
T Consensus 303 ~~D----~a~~~~Kl~l~~~~~~~~~~~~p----------~~r~~w-----~~~g~~~~~~-~~~~~iyV~g~~h~~~~~ 362 (592)
T 1iq0_A 303 AKD----IAFQFWKMGILEGLRFRPYENPY----------YPGLRT-----SAPEGEAYTP-KAEETINVVDVRQSHPQA 362 (592)
T ss_dssp HHH----HHHHHHHTTSSCCCEEEECCCSS----------CTTCEE-----EEEEEEECCC-CCSEEEEEEESSSCCCHH
T ss_pred cch----HHHHHHHhhhhhhhhhhhhhcCc----------chhhcc-----cccCcccCCC-CCCEEEEEEeccHHHHHH
Confidence 111 111111100 00001100 012233 2689999962 268999999887666654
Q ss_pred hccCCChhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCcc-CcceEEeeeeeecCCccccccCCcccCchh
Q 006917 291 ITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWT-LMKTISVTEYLNYEAGKFSKSKGVGVFGND 369 (625)
Q Consensus 291 ~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~-~~~~i~~hg~l~~~G~KMSKS~GN~I~~~d 369 (625)
.. .+.+.++|.+++ ..-.++.||||+++|+|||||+||+|+++|
T Consensus 363 ~~-----------------------------------~~~~~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l~d 407 (592)
T 1iq0_A 363 LV-----------------------------------RAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDE 407 (592)
T ss_dssp HH-----------------------------------HHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHH
T ss_pred HH-----------------------------------HHHHHHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCCccCHHH
Confidence 32 144555665321 112467789999999999999999999999
Q ss_pred hhhcC-------------------------CCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 006917 370 VKDTN-------------------------IPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFI 424 (625)
Q Consensus 370 ~l~~~-------------------------~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~ 424 (625)
+++ . +|+|++|||+++. ...+|++||++.+.+. +++..++++|+++|+++++
T Consensus 408 ll~-~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~-~~~~~~~Fd~d~~~~~-~~~~~~ylqya~aR~~sil 484 (592)
T 1iq0_A 408 VLE-EATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKT-EPKKQIDFRYQEALSF-EGDTGPYVQYAHARAHSIL 484 (592)
T ss_dssp HHH-HHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHS-CTTSCEEECHHHHHCS-SSSSHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhc-CCCCCCeecHHHHHHH-hccchHHHHHHHHHHHHHH
Confidence 998 5 9999999999995 4579999999999985 5568889999999999999
Q ss_pred hCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhccc-----ccccc
Q 006917 425 AKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQF-----WKLYN 499 (625)
Q Consensus 425 ~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~p-----w~l~k 499 (625)
+|. ..+..+.. ...++.+..|+..+..+++.+.+++++++++.++.++++|++.+|+|++.++| |.+.+
T Consensus 485 ~k~----~~~~~~~~--~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~~~vl~~ 558 (592)
T 1iq0_A 485 RKA----GEWGAPDL--SQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTA 558 (592)
T ss_dssp HHH----CCCCCCCG--GGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCSTTS
T ss_pred Hhh----cccCCCcc--CCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccccCCceeCC
Confidence 882 22111210 12345678899999999999999999999999999999999999999999977 77764
No 21
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=1.8e-45 Score=411.26 Aligned_cols=375 Identities=15% Similarity=0.090 Sum_probs=273.5
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHH----------------------
Q 006917 22 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTAT---------------------- 79 (625)
Q Consensus 22 ~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i---------------------- 79 (625)
..++++.|..+.|||||++||||+|+++| +|+++|+++..||+|.++.+++|+|.++
T Consensus 116 ~~~~~V~ve~~spN~~~~~HiGH~Rs~ii-gD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~ 194 (629)
T 2zue_A 116 GKGKKVIVEHTSVNPTKPLHMGHARNAIL-GDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELR 194 (629)
T ss_dssp TTTCEEEEECCCCCTTSCCBHHHHHHHHH-HHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCCCEEEEEeeCCCCCCCCccchhHHHHH-HHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhc
Confidence 34567999999999999999999999655 9999999999999999999999987763
Q ss_pred -----------------HHHHHHcC--------------------CCHHHHHHHHHHHHHHHHhhcCcccccccCCCChh
Q 006917 80 -----------------ETKAMEEN--------------------CTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQ 122 (625)
Q Consensus 80 -----------------~~~a~~~g--------------------~~~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~ 122 (625)
...+++.+ ..++++++.+.+.|++++++|||++|.|.++++..
T Consensus 195 ~~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~ 274 (629)
T 2zue_A 195 ERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIV 274 (629)
T ss_dssp HHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHH
T ss_pred ccccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccccCcCccc
Confidence 33333333 33489999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHCCCEE---EeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccCCCCCCCccCCCccc
Q 006917 123 QTEICQAIFKKLLENNWLS---EYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCK 199 (625)
Q Consensus 123 ~~~~v~~~~~~L~~~G~iy---~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~ 199 (625)
|...+++++++|.++|++| ++.+.++||..++.|..+. +
T Consensus 275 ~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~-------------------------------~------- 316 (629)
T 2zue_A 275 RRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDM-------------------------------K------- 316 (629)
T ss_dssp HTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSS-------------------------------S-------
T ss_pred cchhHHHHHHHHHHCCCccccccCCcCCcEEEECcccCCcc-------------------------------c-------
Confidence 8999999999999999999 3556677777665553211 0
Q ss_pred cCCCccEEEeccceeeeccchHHHHHHHHHhCCCC-CCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCC-CCCce
Q 006917 200 VCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVS-GSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEK-FKDKV 277 (625)
Q Consensus 200 ~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~-~~~~v 277 (625)
.|..++.+++..+..... .+...+.+...+ +..+ ..+..++.++ +++||+++|+.. ..+++
T Consensus 317 -~~~~v~~ksdG~~~Y~~~----Diay~~~K~~ll~~~fr----------~~~~~~~~~~--~~~wG~~~Pg~~~~~d~~ 379 (629)
T 2zue_A 317 -NPILVLRRSDGTATYTGK----DIAYHLWKFGKIDVDLL----------YKEWDSTTWT--TAPDGKSMPNKFGNANIV 379 (629)
T ss_dssp -CCEEEEECTTSCBCHHHH----HHHHHHHHTTCSCCCCE----------EEECSSSCEE--EEEEEEECTTSSCCCSEE
T ss_pred -cCceEEEecCCccccchh----hHHHHHHHhhccccccc----------CCcccccccc--cCCCCCCCCCccCCCCcE
Confidence 022334444433211111 111111110000 0000 0011112223 358999999521 25788
Q ss_pred eeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCc-cCcceEEeeeeeecCCcc
Q 006917 278 FYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENW-TLMKTISVTEYLNYEAGK 356 (625)
Q Consensus 278 iyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~-~~~~~i~~hg~l~~~G~K 356 (625)
||||.....+|+... .+.+.++|.++ +..-.++.||||+++|+|
T Consensus 380 IyV~g~~q~~~~~~l-----------------------------------~~~l~~lG~~~~~~~~~h~~~g~V~~~~~K 424 (629)
T 2zue_A 380 INVIGAEQKHPQLAI-----------------------------------KYALQLLGFEDAAANLYHLAYEHVERPEGK 424 (629)
T ss_dssp EEEEEGGGHHHHHHH-----------------------------------HHHHHHTTCHHHHHTEEEEEECCEEBTTBC
T ss_pred EEEEeCcHhhHHHHH-----------------------------------HHHHHHcCCCCCCCeEEEEEeeeEEcCCCc
Confidence 888877655554321 25566777642 111246788999999999
Q ss_pred ccccCC--cccCchhhhhcC---------------------------CCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhH
Q 006917 357 FSKSKG--VGVFGNDVKDTN---------------------------IPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNT 407 (625)
Q Consensus 357 MSKS~G--N~I~~~d~l~~~---------------------------~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~ 407 (625)
||||+| |+|+++|+++ . +|+|++||++++. ...+|++||++.+.+. ++
T Consensus 425 MSkr~G~~n~v~l~dLl~-e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~-~~~~~~~Fd~d~~~~~-~~ 501 (629)
T 2zue_A 425 FSGRKGTWVGFTVDEVIQ-EAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKY-SPDKKIIFRWEDVLNF-EG 501 (629)
T ss_dssp CCTTTTTTTTCBHHHHHH-HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSS-CTTSCEECCHHHHSCC-SS
T ss_pred ccCCCCCCCeeeHHHHHH-HHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhc-CCCCCCeecHHHHHHH-hc
Confidence 999999 9999999998 5 9999999999995 5579999999999874 56
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCCCCCC------CC-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 006917 408 ELLNNLGNFVNRVLSFIAKPPGRGYGSII------PD-SPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMS 480 (625)
Q Consensus 408 ~l~~~l~n~~~R~~~~~~k~~~~~~~~~~------p~-~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~ 480 (625)
+++++++|+++|++++++|... .+.. +. ......++.+..|+..+..+++.+.+++++++++.++.++++
T Consensus 502 ~t~~ylqYa~aRi~Silrka~~---~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~ 578 (629)
T 2zue_A 502 ESAPYIQYAHARCSSILRKAEE---EGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANE 578 (629)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH---TTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhhhc---cccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7999999999999999987211 1110 00 001123567888999999999999999999999999999999
Q ss_pred HHHHHhHHHHhcc
Q 006917 481 ISSEGNAYLQESQ 493 (625)
Q Consensus 481 l~~~~N~y~~~~~ 493 (625)
|++.+|+|++.++
T Consensus 579 La~~fn~fy~~~~ 591 (629)
T 2zue_A 579 LASLFNKFYMDHP 591 (629)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999884
No 22
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=2.5e-37 Score=332.02 Aligned_cols=339 Identities=16% Similarity=0.156 Sum_probs=244.8
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHH-------HH--cCCC----
Q 006917 23 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKA-------ME--ENCT---- 89 (625)
Q Consensus 23 ~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a-------~~--~g~~---- 89 (625)
.+++++|...+|||+|++||||+|+++| +|+++|++++.||+|.....+.|.|+++-..+ .+ .|.+
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~~~-gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p 106 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVF-GDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYP 106 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHH-HHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHHHH-HHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 5578999999999999999999999755 99999999999999999999999999984332 11 1111
Q ss_pred ---------------------------------HHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHH
Q 006917 90 ---------------------------------TQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLE 136 (625)
Q Consensus 90 ---------------------------------~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~ 136 (625)
.+..++...+.+++++++|||.+|.|...++ .|. .+.++++.|.+
T Consensus 107 ~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess-~~~-~~~~vv~~L~~ 184 (464)
T 3fnr_A 107 EQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERS-YYD-ALNATLESLKE 184 (464)
T ss_dssp SSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGG-GST-THHHHHHHHHH
T ss_pred hhhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHH-HHH-HHHHHHHHHHH
Confidence 0112334456789999999999998866543 344 89999999999
Q ss_pred CCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeee
Q 006917 137 NNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLE 216 (625)
Q Consensus 137 ~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~ 216 (625)
+|++|++++..|...+. +|+ .+..++.++...+
T Consensus 185 ~g~~~e~dGa~~~~~~~-----------------------~g~---------------------~~~~vl~ksDG~~--- 217 (464)
T 3fnr_A 185 HKGIYEQEGKIWLASSQ-----------------------KGD---------------------EKDRVIIREDGRG--- 217 (464)
T ss_dssp TTCEEEETTEEEECGGG-----------------------GTC---------------------SSCEEEECTTSCB---
T ss_pred CCCEEEeCCeEEEEecc-----------------------cCC---------------------CCceEEEeCCCce---
Confidence 99999998887764431 010 0111222211111
Q ss_pred ccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeeccccchHHHhccCCC
Q 006917 217 LPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYT 296 (625)
Q Consensus 217 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~ 296 (625)
. |++.-..+.
T Consensus 218 -------------------------------------------------------------~---------Y~t~DiA~~ 227 (464)
T 3fnr_A 218 -------------------------------------------------------------T---------YLAADIVYH 227 (464)
T ss_dssp -------------------------------------------------------------C---------HHHHHHHHH
T ss_pred -------------------------------------------------------------e---------hhhHHHHHH
Confidence 1 111100000
Q ss_pred -hhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCccCcc-eEEeeeeeec--CCc--cccccCCcccCchhh
Q 006917 297 -PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMK-TISVTEYLNY--EAG--KFSKSKGVGVFGNDV 370 (625)
Q Consensus 297 -~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~-~i~~hg~l~~--~G~--KMSKS~GN~I~~~d~ 370 (625)
..++. ..| ++|++.|.||..+...++ +++.++|.+ +++ .++.||++++ +|+ |||||+||+|++.|+
T Consensus 228 ~~r~~~----~~d-~~Iyv~G~dq~~~f~~l~-~~l~~lG~~--~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dl 299 (464)
T 3fnr_A 228 KDKMSR----GYG-KCINIWGADHHGYIPRMK-AAMEFLGFD--SNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDV 299 (464)
T ss_dssp HHHHTS----SCS-EEEEEEEGGGGGGHHHHH-HHHHTTTCC--GGGEEEEEECCEEEEETTEECCC---CCSSCBHHHH
T ss_pred HHHHHc----CCC-eEEEEecCcHHHHHHHHH-HHHHHcCCC--ccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHH
Confidence 00111 012 458999999974333333 667778864 444 6788899865 885 999999999999999
Q ss_pred hhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHhhhCCCCCCCCCC-CCCCCCCCCcHHHH
Q 006917 371 KDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSI-IPDSPKADLHPSTK 449 (625)
Q Consensus 371 l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~n~~~R~~~~~~k~~~~~~~~~-~p~~~~~~~~~~d~ 449 (625)
++ .+|+|++|||+++ ....+|++|+++.+.+..|.+.+.+++|+++|+++++++... ++. .+........+.|+
T Consensus 300 l~-~~g~dalRy~~l~-~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~---~~~~~~~~~~~~L~~~e~ 374 (464)
T 3fnr_A 300 VD-EIGSDALRYIFLS-KKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGK---KIDDVMKADLQSLNQDGV 374 (464)
T ss_dssp HH-HHCHHHHHHHTTS-SCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTC---CTTTSTTCCCTTCCHHHH
T ss_pred Hh-hccHHHHHHHHHh-cCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc---cCCCccccChhhCChHHH
Confidence 98 7999999999998 466799999999998766677778999999999999988321 111 11111112333499
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhccc
Q 006917 450 MLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQF 494 (625)
Q Consensus 450 ~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~~p 494 (625)
+|+..+..+++.+.+++++++++.++.+|++|+..+|+|++.++.
T Consensus 375 ~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~v 419 (464)
T 3fnr_A 375 NLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKV 419 (464)
T ss_dssp HHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999999999864
No 23
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=8.7e-35 Score=322.50 Aligned_cols=342 Identities=13% Similarity=0.130 Sum_probs=242.7
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHH----------------------
Q 006917 22 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTAT---------------------- 79 (625)
Q Consensus 22 ~~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i---------------------- 79 (625)
..++++.|..+.|||||++||||+|+++ .+|+++|+++..||+|.++.+++|+|+++
T Consensus 140 ~~~~~V~ve~~spN~~~plHvGHlRs~i-iGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~ 218 (607)
T 1f7u_A 140 VENKKVIIEFSSPNIAKPFHAGHLRSTI-IGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIH 218 (607)
T ss_dssp SSCCEEEEECCCCBTTSCCBGGGHHHHH-HHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHH
T ss_pred cCCCeEEEEecCCCCCCCCccchHHHHH-HHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChH
Confidence 3456799999999999999999999965 59999999999999999999999987765
Q ss_pred --------------------------HHHHHH------cCCC-----HHHHHHHHHHHHHHHHhhcCcccccccCCCChh
Q 006917 80 --------------------------ETKAME------ENCT-----TQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQ 122 (625)
Q Consensus 80 --------------------------~~~a~~------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~ 122 (625)
...|++ .|.+ ++++++.+.+.|++++++|||.+|.|.++++ .
T Consensus 219 ~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~-~ 297 (607)
T 1f7u_A 219 HLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQ-V 297 (607)
T ss_dssp HHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGG-C
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcch-h
Confidence 223443 3544 5788999999999999999999998877764 2
Q ss_pred HHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCC
Q 006917 123 QTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQ 202 (625)
Q Consensus 123 ~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g 202 (625)
+...+.++++.|.++|++|+.++.+|+..+. | |+ ++ .
T Consensus 298 ~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~--~---------------------g~------------~~--------d 334 (607)
T 1f7u_A 298 SKESMLKAIDLFKEKGLTHEDKGAVLIDLTK--F---------------------NK------------KL--------G 334 (607)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETTEEEEEGGG--T---------------------CT------------TT--------C
T ss_pred hhhHHHHHHHHHHhCCCEEEECCcEEEEecc--c---------------------CC------------CC--------C
Confidence 3378899999999999999988888775431 1 10 00 0
Q ss_pred CccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChhHHHHHHHHHhcCCCCcccccccCCCcccCCCCCCCceeeeec
Q 006917 203 ATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWF 282 (625)
Q Consensus 203 ~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~WGi~vP~~~~~~~viyvWf 282 (625)
..++.++...+.....++ .-.+.+ ... +| -+++
T Consensus 335 ~~v~~KsDG~~~Y~t~Di----a~~~~k--------------~~~----------------~~--------~d~~----- 367 (607)
T 1f7u_A 335 KAIVQKSDGTTLYLTRDV----GAAMDR--------------YEK----------------YH--------FDKM----- 367 (607)
T ss_dssp EEEEECTTSCCCHHHHHH----HHHHHH--------------HHH----------------HC--------CSEE-----
T ss_pred ceeEeccCCCcCCCCCcH----HHHHHH--------------Hhh----------------cC--------CCcE-----
Confidence 012222222221111110 000000 000 00 1334
Q ss_pred cccchHHHhccCCChhhHhhcCCCCCcceEEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeeecCCccccccCC
Q 006917 283 DAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKG 362 (625)
Q Consensus 283 Da~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~~~G~KMSKS~G 362 (625)
|++.|.|+.-.....+ +.+.++|.+ .+..+.+.+|.+++ |||||+|
T Consensus 368 -----------------------------IyV~g~~q~~~f~q~~-~~~~~lG~~--~~~~~~Hv~fg~v~--kMSkR~G 413 (607)
T 1f7u_A 368 -----------------------------IYVIASQQDLHAAQFF-EILKQMGFE--WAKDLQHVNFGMVQ--GMSTRKG 413 (607)
T ss_dssp -----------------------------EEECCGGGHHHHHHHH-HHHHHTTCG--GGGGEEEECCCCEE--SCCGGGT
T ss_pred -----------------------------EEEEcChHhhHHHHHH-HHHHHcCCC--cCcEEEEecccccc--cccCCCC
Confidence 4455555432112222 566777864 34556555664544 6999999
Q ss_pred cccCchhhhhcCCCc----------------------------hhHHHHHHhcCCCCCCCCcCHHHHHHHHhHHHHHHHH
Q 006917 363 VGVFGNDVKDTNIPA----------------------------EVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLG 414 (625)
Q Consensus 363 N~I~~~d~l~~~~g~----------------------------D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~ 414 (625)
|+|+++|+++ .++. .++||++++ .+..++++||++.+.+ .+++...+++
T Consensus 414 ~~v~L~dLld-e~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls-~~~~s~~~Fd~d~~~~-~~g~t~pylq 490 (607)
T 1f7u_A 414 TVVFLDNILE-ETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQ-GKRINNYEFKWERMLS-FEGDTGPYLQ 490 (607)
T ss_dssp CCCBHHHHHH-HHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHS-SCTTCCEECCHHHHHC-CSSSSHHHHH
T ss_pred CcccHHHHHH-HHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhc-cCCCCCcccCHHHHHH-HhccchHHHH
Confidence 9999999998 3422 489999998 7778999999999987 5667778999
Q ss_pred HHHHHHHHhhhCCCCCCCCCC-CCCCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHHhc
Q 006917 415 NFVNRVLSFIAKPPGRGYGSI-IPDSP-KADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQES 492 (625)
Q Consensus 415 n~~~R~~~~~~k~~~~~~~~~-~p~~~-~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~i~~l~~~~N~y~~~~ 492 (625)
|+++|++++++|..+ .+.. +.... ....++.+..|+..+..+++.+.+++++++++.++.++++|+..+|+|++.+
T Consensus 491 Ya~aRi~SIlrka~~--~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn~fY~~~ 568 (607)
T 1f7u_A 491 YAHSRLRSVERNASG--ITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVL 568 (607)
T ss_dssp HHHHHHHHHHHHTTT--SCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC--CCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999998311 1100 00000 1123567889999999999999999999999999999999999999999998
Q ss_pred cc
Q 006917 493 QF 494 (625)
Q Consensus 493 ~p 494 (625)
+.
T Consensus 569 ~V 570 (607)
T 1f7u_A 569 WV 570 (607)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 24
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.98 E-value=8.6e-34 Score=312.56 Aligned_cols=273 Identities=12% Similarity=0.091 Sum_probs=182.0
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccc--hHH---HHHHHHc--CCCH---------
Q 006917 27 ILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYG--TAT---ETKAMEE--NCTT--------- 90 (625)
Q Consensus 27 ~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G--~~i---~~~a~~~--g~~~--------- 90 (625)
.||+.+.|||||.+||||+|++ |.+|+++||++++|++|.|++++||+| .+| ..+|.++ |+++
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~a-l~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~ 99 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFREL-FTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGC 99 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHH-HHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSS
T ss_pred eEEECCCCCCCCCcccCCcHHH-HHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhh
Confidence 5777667899999999999985 569999999999999999999999999 877 6666666 8887
Q ss_pred -HHHHHHHHHHHHHHHhhcCcccccccCCCChhHHH-HHHHHHHHHHHCC-CEEEeeee-------eeeeCCCCcccccc
Q 006917 91 -QQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTE-ICQAIFKKLLENN-WLSEYTTQ-------QLYCDTCKRFLADR 160 (625)
Q Consensus 91 -~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~-~v~~~~~~L~~~G-~iy~~~~~-------~~y~~~~~~~l~~~ 160 (625)
+++++++.+.|+++|++|||++|.| ++++. |.. .+++++++|.++| .||.-... ..||. + +++.
T Consensus 100 ~~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~-~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~~- 173 (523)
T 1irx_A 100 HESYAEHFMRKFEEEVEKLGIEVDLL-YASEL-YKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWPA- 173 (523)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCCCEEE-EHHHH-HHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCSE-
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEE-echhh-ccchHHHHHHHHHHHchHHHHHHHHhhccccccccccC--C-ceec-
Confidence 8999999999999999999999988 66533 777 8999999999999 76632111 13332 1 2211
Q ss_pred ccccCCCCCccccCCCCCccccccCCCCCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHHHHhCCCCCCCChh
Q 006917 161 LVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQN 240 (625)
Q Consensus 161 ~v~g~cp~~~c~~~~~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~ 240 (625)
...|+.||+.... +.......+.|.+
T Consensus 174 -----------------~~~~~~~~~~~~~--------------~~~~~~~~~~f~~----------------------- 199 (523)
T 1irx_A 174 -----------------MVYCPEHRREAEI--------------IEWDGGWKVKYKC----------------------- 199 (523)
T ss_dssp -----------------EEECTTTCCEECE--------------EEECSSSCEEECC-----------------------
T ss_pred -----------------cccchhhCCcccc--------------cccCCCCceeeee-----------------------
Confidence 0124445543211 0000001122222
Q ss_pred HHHHHHHHHhcCCCCcccccccCC-CcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEEeecc
Q 006917 241 AIQGTYAWLKDGLKPRCITRDLKW-GVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDN 319 (625)
Q Consensus 241 ~~~~~~~~l~~~l~d~~IsR~~~W-Gi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~GkD~ 319 (625)
+.|. ++....| |...|.|. ++ | +.. + .++. .+ ++++|+||
T Consensus 200 ---------~~g~----~~~~d~~~G~g~~~w~-----~d-~-----~~~---------~-~~l~--~~---vd~~G~Dh 240 (523)
T 1irx_A 200 ---------PEGH----EGWVDIRSGNVKLRWR-----VD-W-----PMR---------W-SHFG--VD---FEPAGKDH 240 (523)
T ss_dssp ---------SSSC----CCEECTTSSCEEECHH-----HH-H-----HHH---------H-HHSC--CC---BCCEEHHH
T ss_pred ---------cCCC----ccccCCcCCCCCCCCC-----cc-h-----Hhh---------H-HHcC--CC---CcCCCcCc
Confidence 0111 1222334 44444331 00 1 100 1 1121 23 67899999
Q ss_pred cchh----HhHHHHHhhcCCCCccCcceEEeeeeeecC--CccccccCCcccCchhhhhcCCCchhHHHHHHhcCCCCCC
Q 006917 320 APFH----TVMFPSTLLGTEENWTLMKTISVTEYLNYE--AGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSD 393 (625)
Q Consensus 320 ~~fH----~~~~pa~l~a~~~~~~~~~~i~~hg~l~~~--G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d 393 (625)
+++| +..++++ .++|. ++| .+++||||+.+ |+|||||+||+|++.++++ .|++|++||||++ .+++++
T Consensus 241 ~~~h~s~~~~~~i~~-~alG~--~~p-~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~-~~~pdalR~~l~~-~~~~~~ 314 (523)
T 1irx_A 241 LVAGSSYDTGKEIIK-EVYGK--EAP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYE-VLEPGLVRFIYAR-HRPNKE 314 (523)
T ss_dssp HSTTSHHHHHHHHHH-HHHCC--CCC-BCCEECCEEESCC---------CCCCHHHHHT-TSCHHHHHHHHHS-SCTTSC
T ss_pred cCCCcchhhHHHHHH-HHhCC--CCC-eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHH-HcCHHHHHHHHHh-cCCCCC
Confidence 9999 5677774 56675 355 67888999987 8999999999999999998 6999999999998 567899
Q ss_pred CCcCHH-HHHHHH
Q 006917 394 TLFTWE-DFQAKL 405 (625)
Q Consensus 394 ~~fs~~-~~~~~~ 405 (625)
++||++ .+.+..
T Consensus 315 ~~fs~~~~l~~~~ 327 (523)
T 1irx_A 315 IKIDLGLGILNLY 327 (523)
T ss_dssp EEECCSTTHHHHH
T ss_pred ceeCcchhHHHHH
Confidence 999999 776653
No 25
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.75 E-value=1.8e-18 Score=186.44 Aligned_cols=281 Identities=15% Similarity=0.200 Sum_probs=149.2
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
++|--+|+|||.+||||||++++ .+.+|| +|.+.|+..+||.+.+ .-...+.+.|.+++++
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~-n~l~Ar-----~~~G~~iLRieDtD~~-------------R~~~e~~~~I~edL~w 157 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAIL-NHEYAR-----KYDGRLILRIEDTDPR-------------RVDPEAYDMIPADLEW 157 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHH-HHHHHH-----HTTCEEEEEECCCCGG-------------GCCTTHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHH-HHHHHH-----HcCCEEEEEECcCCcc-------------cccHHHHHHHHHHHHH
Confidence 67889999999999999998643 555555 6778888888887764 1144677889999999
Q ss_pred cCcccccccCCCChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccccccccccCCCCCccccCCCCCccccccCCC
Q 006917 108 FNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKL 187 (625)
Q Consensus 108 lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~~~c~~~~~~g~~ce~cg~~ 187 (625)
||+.+|..++.+ +|.....++..+|.++|++|. .||+..+-. ..+ + +|..
T Consensus 158 LGl~wd~~~~qS--dr~~~y~~~~~~Li~~G~AY~-----c~cs~eei~-~~r---~------------~g~~------- 207 (553)
T 3aii_A 158 LGVEWDETVIQS--DRMETYYEYTEKLIERGGAYV-----CTCRPEEFR-ELK---N------------RGEA------- 207 (553)
T ss_dssp HTCCCSEEEEGG--GGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHH-HHH---H------------TTCC-------
T ss_pred cCCCCCCCcccc--cCHHHHHHHHHHHHHcCCcee-----CCCCHHHHH-HHh---h------------cCCC-------
Confidence 999999665554 788899999999999999995 444432110 000 0 0000
Q ss_pred CCCCccCCCccccCCCccEEEeccceeeeccchHHHHHHH--HHhCC-CCCCCChhHHHHHHHHHhcCCCCcccccccCC
Q 006917 188 LNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEY--INKMS-VSGSWSQNAIQGTYAWLKDGLKPRCITRDLKW 264 (625)
Q Consensus 188 ~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~l~d~~IsR~~~W 264 (625)
..|. +.++ .+.+..| ..... ....++-.. . ...-+..+.|+.+-|...=
T Consensus 208 --------~~cR--~~s~---------------ee~l~~f~~m~~G~~g~~~lR~k~--d-~~~~n~~~~Dfvl~R~~~~ 259 (553)
T 3aii_A 208 --------CHCR--SLGF---------------RENLQRWREMFEMKEGSAVVRVKT--D-LNHPNPAIRDWVSMRIVEA 259 (553)
T ss_dssp --------CGGG--GCCH---------------HHHHHHHHHGGGSCTTSCEEEECC--C-TTCSSGGGTTCEEEEECCS
T ss_pred --------Cccc--cCCH---------------HHHHHHHHHHhcCCcCceEEEEEc--c-cccCCCCCCCcEEEEecCC
Confidence 0010 0000 0001100 00000 000000000 0 0000011335444442111
Q ss_pred CcccCCCCCCCceeeeeccccchHHHhccCCChhhHhhcCCCCCcceEEEE-eecccchhHhHHHHHhhcCCCCccCcce
Q 006917 265 GVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFM-GKDNAPFHTVMFPSTLLGTEENWTLMKT 343 (625)
Q Consensus 265 Gi~vP~~~~~~~viyvWfDa~~~yi~~~~~~~~~~~~~w~~p~d~~~i~~~-GkD~~~fH~~~~pa~l~a~~~~~~~~~~ 343 (625)
+-|.++ ++-++| +...+++.. +... ..+.|++ |.|++- ++.....+..++|. +.|..
T Consensus 260 --~hp~~G-d~~~g~-----PtYhfa~~v------DD~~-----~GIThviRG~D~~~-nt~~Q~~l~~alG~--~~P~y 317 (553)
T 3aii_A 260 --EHPRTG-TRYRVY-----PMMNFSVAV------DDHL-----LGVTHVLRGKDHLA-NREKQEYLYRHLGW--EPPEF 317 (553)
T ss_dssp --CBTTTB-TSCCEE-----ECHHHHHHH------HHHH-----TTCCEEEC-----C-HHHHHHHHHHHHTC--CCCEE
T ss_pred --CCCccC-CCceee-----eeeeeeeee------eecc-----CCCceEeccHhhhh-CHHHHHHHHHHcCC--CCCeE
Confidence 111111 000111 111222210 1111 1135655 777763 33222233445564 35654
Q ss_pred EEeeeeeecCCccccccCCc---------------ccCchhhhhcCCCchhHHHHHHhcCCCCCCCCcCHHHHHHHHhHH
Q 006917 344 ISVTEYLNYEAGKFSKSKGV---------------GVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTE 408 (625)
Q Consensus 344 i~~hg~l~~~G~KMSKS~GN---------------~I~~~d~l~~~~g~D~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~ 408 (625)
.++++|+.+|+|||||+|| +.++.++...+|.++++|.|+++.+...++.+||++.+.+. |++
T Consensus 318 -~H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~-~r~ 395 (553)
T 3aii_A 318 -IHYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGL-NRS 395 (553)
T ss_dssp -ECCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHH-HHH
T ss_pred -EEeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHH-HHH
Confidence 5889999999999999998 67889998878999999999998655468999999998873 443
Q ss_pred H
Q 006917 409 L 409 (625)
Q Consensus 409 l 409 (625)
.
T Consensus 396 ~ 396 (553)
T 3aii_A 396 I 396 (553)
T ss_dssp H
T ss_pred H
Confidence 3
No 26
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.66 E-value=4.6e-16 Score=167.66 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=72.5
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
++|--+|+|||.|||||||+++ ..+.+|| ++...|+..+||.+.. .....+.+.|.++|++
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal-~n~l~Ar-----~~gG~fiLRieDTD~~-------------R~~~e~~~~I~edL~w 87 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSIC-LNFGIAQ-----DYKGQCNLRFDDTNPV-------------KEDIEYVESIKNDVEW 87 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHH-HHHHHHH-----HTTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHH-HHHHHHH-----HcCCEEEEEECCCCch-------------hcCHHHHHHHHHHHHH
Confidence 6788889999999999999864 4777776 4566777777776542 2455778889999999
Q ss_pred cCcccc-cccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFD-EFGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D-~~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
||+.+| ..++.+ +|.....++..+|.++|++|.
T Consensus 88 LGl~wde~~~~qS--er~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 88 LGFHWSGNVRYSS--DYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp TTCCCSSSCEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCCCCeehc--ccHHHHHHHHHHHHHCCCcee
Confidence 999996 344443 566667777789999999995
No 27
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.59 E-value=6.2e-15 Score=159.05 Aligned_cols=93 Identities=14% Similarity=0.197 Sum_probs=69.5
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006917 29 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWF 108 (625)
Q Consensus 29 i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 108 (625)
+|--.|+|||.+||||+|++ |....+|| ++.+.|+.-+||.+. ......+.+.+.++|++|
T Consensus 3 ~~RFAPSPtG~lHiG~arta-l~n~l~Ar-----~~~G~filRieDtD~-------------~R~~~~~~~~i~~dL~wL 63 (492)
T 2cfo_A 3 RVRLAPSPTGNLHIGTARTA-VFNWLYAR-----HRGGKFILRIEDTDR-------------ERSRPEYTENILEGLQWL 63 (492)
T ss_dssp EEEECCCTTSCCBHHHHHHH-HHHHHHHH-----HTTCEEEEEECCCSS-------------SSCCHHHHHHHHHHHHHT
T ss_pred eEEeCCCCCCCccHHHHHHH-HHHHHHHH-----hcCCeEEEEEeeCCc-------------cccchHHHHHHHHHHHHc
Confidence 46678899999999999986 43555555 455666666666653 111256778899999999
Q ss_pred Cccccc-ccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 109 NISFDE-FGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 109 gi~~D~-~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
||.+|. .++.+ ++....+++.++|.++|++|.
T Consensus 64 Gl~wde~~~~QS--~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 64 GLTWDEGPYFQS--DRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp TCCCSEEEEEGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCCCcccc--CCHHHHHHHHHHHHHCCCceE
Confidence 999995 44444 567788888899999999996
No 28
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.59 E-value=3.7e-15 Score=167.35 Aligned_cols=95 Identities=17% Similarity=0.218 Sum_probs=75.4
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006917 27 ILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYN 106 (625)
Q Consensus 27 ~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 106 (625)
-++|--+|+|||.+||||||++++ ...+|| +|.+.|+..+||.+.+ .....+.+.|.++|+
T Consensus 66 ~v~tRFaPSPtG~LHIGhARtAL~-n~l~Ar-----~~gG~fiLRIEDTD~~-------------R~~~e~~~~IledL~ 126 (851)
T 2hz7_A 66 RVVTRFPPDPSGYAHLGHVFASLL-DFNTAR-----QYGGQFNLRMDDTNPE-------------LARQEYVDSIADDLK 126 (851)
T ss_dssp SCEEEECCCSSSCCBHHHHHHHHH-HHHHHH-----HTTCEEEEEECCCCTT-------------TCCHHHHHHHHHHHH
T ss_pred ceEEEeCCCCCCCccHHHHHHHHH-HHHHHH-----HcCCEEEEEECcCCcc-------------cccHHHHHHHHHHHH
Confidence 377888899999999999998644 666666 4677788888887654 125577888999999
Q ss_pred hcCcccc-cccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 107 WFNISFD-EFGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 107 ~lgi~~D-~~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
+||+.+| ..++.+ +|.....++..+|.++|++|.
T Consensus 127 wLGl~wde~~~~qS--er~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 127 WLGLDWGEHFYYAS--DYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp HHTCCCTTCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred HcCCCCCCCcccHh--hhHHHHHHHHHHHHHCCCcEe
Confidence 9999996 444444 688889999999999999995
No 29
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.57 E-value=5.4e-14 Score=151.62 Aligned_cols=96 Identities=20% Similarity=0.236 Sum_probs=74.0
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006917 26 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVY 105 (625)
Q Consensus 26 ~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 105 (625)
.++++-..|+|||+|||||+|++++ .|.+||. ..|.-++.+.-||. ......+.+.+.+++
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~-n~~~Ar~--~~G~~iLRieDtD~----------------~r~~~~~~~~I~~~l 72 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALF-NFLFARK--EKGKFILRIEDTDL----------------ERSEREYEEKLMESL 72 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHH-HHHHHHH--HTCEEEECBCCSSC----------------CSGGGHHHHHHHHHH
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHH-HHHHHHH--cCCeEEEEEecCCc----------------cccHHHHHHHHHHHH
Confidence 4778888999999999999999755 9999996 67877777655542 223345566778899
Q ss_pred hhcCcccccc---------cCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 106 NWFNISFDEF---------GRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 106 ~~lgi~~D~~---------~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
++||+.+|.. ++ ..++....+++.++|.++|.+|.
T Consensus 73 ~wlGl~~de~p~~gg~~g~y~--QS~r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 73 RWLGLLWDEGPDVGGDHGPYR--QSERVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp HHHTCCCSBBTTTBCTTCCCB--GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred HHcCCCCCCCcccCCCCCcee--eeccHHHHHHHHHHHHHCCCeeE
Confidence 9999999852 23 33677888889999999999984
No 30
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.45 E-value=5.4e-13 Score=143.63 Aligned_cols=94 Identities=22% Similarity=0.229 Sum_probs=69.4
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
++|--.|.|||.+||||+|++ +....+||- ..|.-++ =+||.+.+ .....+.+.+.++|++
T Consensus 26 v~~RFAPsPtG~LHiG~~rta-l~n~l~Ar~--~~G~fil---RieDtD~~-------------R~~~~~~~~I~~dL~w 86 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTA-LFNWMFARK--EGGKFIL---RIEDTDTE-------------RSSREYEQQILESLRW 86 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHH-HHHHHHHHH--HTCEEEE---CBCCCCTT-------------TCCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCCccHHHHHHH-HHHHHHHHH--cCCEEEE---EEeeCCcc-------------cccHHHHHHHHHHHHH
Confidence 567788999999999999986 448888873 3454444 44554332 2344667789999999
Q ss_pred cCcccccc---------cCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDEF---------GRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~~---------~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
|||.+|.- ++.+ ++....++..++|.++|++|.
T Consensus 87 lGl~wDe~~~~gG~~gp~~QS--er~~~y~~~~~~L~~~G~aY~ 128 (488)
T 3afh_A 87 CGLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYY 128 (488)
T ss_dssp TTCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCcCCCCCCCCCCeeee--CCHHHHHHHHHHHHHcCCeEe
Confidence 99999962 3333 556788899999999999996
No 31
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.44 E-value=2.2e-13 Score=149.97 Aligned_cols=94 Identities=24% Similarity=0.243 Sum_probs=69.2
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
+++--.|+|||+|||||+|++. ..+.+||. ..|.-++.+--|| +......+.+.+.++|++
T Consensus 130 v~~RFaPsPTG~LHiG~artAl-~n~l~Ar~--~~G~~ilRieDtD----------------~~r~~~~~~~~I~~dL~w 190 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTAL-FNWMFARK--EGGKFILRIEDTD----------------TERSSREYEQQILESLRW 190 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHH-HHHHHHHH--HTCEEEECBCCCC----------------SSSCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCccHHHHHHHH-HHHHHHHh--cCCcEEEEecCcC----------------hhhccHHHHHHHHHHHHH
Confidence 3455559999999999999975 59999995 4555555554433 122345667789999999
Q ss_pred cCcccccc---------cCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDEF---------GRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~~---------~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
|||.+|.- ++.+ ++....++...+|.++|++|.
T Consensus 191 lGl~~D~~~~~gG~~gp~~qS--er~~~y~~~~~~L~~~G~aY~ 232 (592)
T 3al0_C 191 CGLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYY 232 (592)
T ss_dssp TTCCCSBBTTTBCTTCCCBST--TCHHHHHHHHHHHHHTTTEEE
T ss_pred cCCCCCCCCCcCCCCCCeeee--CCHHHHHHHHHHHHHcCCceE
Confidence 99999962 3333 455778889999999999996
No 32
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.41 E-value=2.3e-12 Score=138.69 Aligned_cols=94 Identities=23% Similarity=0.322 Sum_probs=70.8
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
++|--.|.|||.|||||+|++. ....+|| ...|.-++.+--||. ......+.+.+.++|++
T Consensus 7 vr~RFAPsPTG~LHiG~~rtAL-~n~l~Ar--~~gG~fiLRieDtD~----------------~R~~~~~~~~I~~~L~w 67 (498)
T 2ja2_A 7 VRVRFCPSPTGTPHVGLVRTAL-FNWAYAR--HTGGTFVFRIEDTDA----------------QRDSEESYLALLDALRW 67 (498)
T ss_dssp CEEEECCCSSSSCBHHHHHHHH-HHHHHHH--HHTCEEEECBCCCCT----------------TTCCHHHHHHHHHHHHH
T ss_pred eeEEECcCCCCCccHHHHHHHH-HHHHHHH--HcCCEEEEEECcCCC----------------cccChHHHHHHHHHHHH
Confidence 4567778999999999999964 5889998 456655555544543 23344567788999999
Q ss_pred cCccccc---------ccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDE---------FGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~---------~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
||+.+|. .++.+ ++...-++...+|.++|++|.
T Consensus 68 lGl~wDegp~~gG~~~~~~QS--~r~~~y~~~~~~L~~~g~aY~ 109 (498)
T 2ja2_A 68 LGLDWDEGPEVGGPYGPYRQS--QRAEIYRDVLARLLAAGEAYH 109 (498)
T ss_dssp HTCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCcCCCcCcCCCCCCeeee--cCHHHHHHHHHHHHHcCCeEE
Confidence 9999996 33333 566777888899999999995
No 33
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.39 E-value=1.8e-13 Score=138.56 Aligned_cols=94 Identities=14% Similarity=0.174 Sum_probs=72.3
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
+++--.|+|||.+||||+|++ | .+|+..+++.+.|+.-+||.+.+ .-...+.+.+.++|++
T Consensus 6 v~~RFAPsPtG~LHiG~~rta-l-----~n~l~Ar~~~g~~ilRieDtD~~-------------R~~~~~~~~I~~dL~~ 66 (298)
T 1nzj_A 6 YIGRFAPSPSGELHFGSLIAA-L-----GSYLQARARQGRWLVRIEDIDPP-------------REVPGAAETILRQLEH 66 (298)
T ss_dssp CEEEECCCTTSCCCHHHHHHH-H-----HHHHHHHHTTCEEEEEECCSCGG-------------GSCTTHHHHHHHHHHH
T ss_pred eEEEECcCCCCCccHHHHHHH-H-----HHHHHHHhcCCeEEEEEecCCch-------------hhHHHHHHHHHHHHHH
Confidence 567788999999999999986 4 34444445677777777876654 1225677889999999
Q ss_pred cCccccc-ccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDE-FGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~-~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
|||.+|. .++.+ ++....++++++|.++|++|.
T Consensus 67 LGl~~D~~~~~qS--er~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 67 YGLHWDGDVLWQS--QRHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp TTCCCSSCCEEGG--GCHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCCCCCCeeee--CCHHHHHHHHHHHHHcCCccc
Confidence 9999995 33444 466888999999999999995
No 34
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.38 E-value=1.3e-12 Score=139.72 Aligned_cols=94 Identities=18% Similarity=0.284 Sum_probs=70.2
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
++|--.|+|||.+||||+|++ +..+.++|. ..| .|+.-+||.+.+ .....+.+.+.++|++
T Consensus 26 v~~RFAPSPTG~lHiG~~rta-l~n~l~Ar~--~~G---~filRieDtD~~-------------R~~~~~~~~i~~dl~w 86 (490)
T 4g6z_A 26 VRTRFAPSPTGFIHLGNIRSA-LYPWAFARK--MKG---TFVLRIEDTDVE-------------RSSQEAVDAILEGMAW 86 (490)
T ss_dssp CEEEECCCCCSCCBHHHHHHH-HHHHHHHHH--TTC---EEEEEECCCCGG-------------GCCHHHHHHHHHHHHH
T ss_pred ceEEeCCCCCCCccHHHHHHH-HHHHHHHHh--cCC---eEEEEeCCCCcc-------------cccHHHHHHHHHHHHH
Confidence 467777899999999999986 548888883 344 455555554431 1235678889999999
Q ss_pred cCccccc-ccCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDE-FGRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~-~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
|||.+|. .++.+ ++....++++.+|.++|++|.
T Consensus 87 lGl~~d~~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 120 (490)
T 4g6z_A 87 LGLDYDEGPYYQM--QRMDRYREVLAQMQEKGLVYP 120 (490)
T ss_dssp TTCCCSEEEEEGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCCCCcccc--cCHHHHHHHHHHHHHCCCEEe
Confidence 9999995 23333 577788899999999999995
No 35
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.38 E-value=3e-12 Score=137.32 Aligned_cols=94 Identities=23% Similarity=0.355 Sum_probs=68.7
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
++|--+|.|||.+||||+|++. ....+|| ...|. |+.-+||.+.+ .....+.+.+.+++++
T Consensus 2 v~~RFaPsPtG~LHiG~~rtal-~n~l~Ar--~~~G~---filRieDtD~~-------------R~~~~~~~~I~~dl~w 62 (468)
T 1j09_A 2 VVTRIAPSPTGDPHVGTAYIAL-FNYAWAR--RNGGR---FIVRIEDTDRA-------------RYVPGAEERILAALKW 62 (468)
T ss_dssp CEEEECCCCSSSCBHHHHHHHH-HHHHHHH--HTTCE---EEECBCCCCTT-------------SCCTTHHHHHHHHHHH
T ss_pred ceEEeCCCCCCCccHHHHHHHH-HHHHHHH--HcCCE---EEEEeCcCCCc-------------ccChHHHHHHHHHHHH
Confidence 3566788999999999999864 4888887 33444 55555555432 2234566788999999
Q ss_pred cCcccccc---------cCCCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDEF---------GRTSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~~---------~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
||+.+|.- ++.+ ++....++...+|.++|++|.
T Consensus 63 lGl~wd~~~~~gG~~gp~~QS--~r~~~y~~~~~~L~~~G~aY~ 104 (468)
T 1j09_A 63 LGLSYDEGPDVGGPHGPYRQS--ERLPLYQKYAEELLKRGWAYR 104 (468)
T ss_dssp TTCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHHTSEEE
T ss_pred cCCCCCCCCCCCCCCCCeecc--CCHHHHHHHHHHHHHcCCeEE
Confidence 99999953 3333 567778888899999999995
No 36
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.13 E-value=3.8e-10 Score=122.96 Aligned_cols=96 Identities=23% Similarity=0.240 Sum_probs=67.6
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
+.|--+|.|||.|||||||++.+ ...+|| +..|.-++.+--||- ......+.+.+.++|++
T Consensus 25 vrtRFAPsPtG~LHiG~artAl~-n~~~Ar--~~~G~fiLRieDtD~----------------~R~~~~~~~~I~~~L~w 85 (512)
T 4gri_A 25 TRVRYAPSPTGLQHIGGIRTALF-NYFFAK--SCGGKFLLRIEDTDQ----------------SRYSPEAENDLYSSLKW 85 (512)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHH-HHHHHH--HTTCEEEECBCCCCT----------------TSCCHHHHHHHHHHHHH
T ss_pred eeEEeCcCCCCcccHHHHHHHHH-HHHHHH--HcCCEEEEEeCcCCC----------------CcCCHHHHHHHHHHHHH
Confidence 56777889999999999998754 888888 445654555544442 12234566778899999
Q ss_pred cCcccccccC-------CCChhHHHHHHHHHHHHHHCCCEEE
Q 006917 108 FNISFDEFGR-------TSTPQQTEICQAIFKKLLENNWLSE 142 (625)
Q Consensus 108 lgi~~D~~~~-------t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (625)
||+.+|.-.. -...++...-++...+|.++|++|.
T Consensus 86 lGl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~ 127 (512)
T 4gri_A 86 LGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYY 127 (512)
T ss_dssp HTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccc
Confidence 9999984111 0122455666778888999999995
No 37
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.32 E-value=1.2e-05 Score=82.50 Aligned_cols=66 Identities=20% Similarity=0.084 Sum_probs=46.2
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHhc
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITN 387 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~~ 387 (625)
+.+.|.|+.. |..+=--+....+. ..| ..+++.++. ++|+|||||.||+|++.| ++|.+|..+.+.
T Consensus 173 ~v~~G~DQ~~-~~~l~rdla~~~~~--~~p-~~l~~pll~~l~G~KMSKS~~n~I~l~d------~p~~i~~Ki~~a 239 (323)
T 2cyb_A 173 LAVGGIDQRK-IHMLARENLPRLGY--SSP-VCLHTPILVGLDGQKMSSSKGNYISVRD------PPEEVERKIRKA 239 (323)
T ss_dssp EEEEEGGGHH-HHHHHHHHGGGGTC--CCC-EEEEECCCBCTTSSBCCTTTTCSCBTTC------CHHHHHHHHHTS
T ss_pred EEEechhhHH-HHHHHHHHHHhcCC--CCc-eEEecCcccCCCCCcccCCcCceeCCCC------CHHHHHHHHHhc
Confidence 7889999975 33322223333443 222 456677774 899999999999999875 378999999973
No 38
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=97.90 E-value=3.8e-05 Score=79.02 Aligned_cols=69 Identities=14% Similarity=0.000 Sum_probs=43.9
Q ss_pred EEEEeecccchhHh---HHHHHhhcCCCCccCcceEEee-eeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTV---MFPSTLLGTEENWTLMKTISVT-EYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~---~~pa~l~a~~~~~~~~~~i~~h-g~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+..+|.|+...... +-+.+-...|.-++.|..++.| .+|. ++|.|||||.+|.|++.| +++.++=.+.+
T Consensus 156 ~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d------sp~~i~~Ki~~ 229 (340)
T 2g36_A 156 GVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI------SEKELEQTILR 229 (340)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC------CHHHHHHHHHT
T ss_pred EEEcccchHHHHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeeeC------CHHHHHHHHHh
Confidence 88899999754321 1122211223112356655553 4554 799999999999998876 56777777776
No 39
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=97.82 E-value=1.6e-05 Score=81.10 Aligned_cols=69 Identities=14% Similarity=0.014 Sum_probs=42.5
Q ss_pred EEEEeecccchhHh---HHHHHhhcCCCCccCcceEEe--eeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHH
Q 006917 312 YQFMGKDNAPFHTV---MFPSTLLGTEENWTLMKTISV--TEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLI 385 (625)
Q Consensus 312 i~~~GkD~~~fH~~---~~pa~l~a~~~~~~~~~~i~~--hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll 385 (625)
+..+|.|+..++.. +-+-+-...|..++.|..++. +.+|. ++|+|||||.+|.|++.| +++.++=.+.
T Consensus 142 ~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d------~p~~i~~KI~ 215 (322)
T 3tzl_A 142 IVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS------SEKTLKKQIS 215 (322)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC------CHHHHHHHHH
T ss_pred EEEeccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC------CHHHHHHHHH
Confidence 78899999754421 111111111212345666552 45564 899999999999998865 3566777666
Q ss_pred h
Q 006917 386 T 386 (625)
Q Consensus 386 ~ 386 (625)
+
T Consensus 216 ~ 216 (322)
T 3tzl_A 216 S 216 (322)
T ss_dssp T
T ss_pred h
Confidence 5
No 40
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00014 Score=76.33 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=32.6
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cC-CccccccCCcc-cCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YE-AGKFSKSKGVG-VFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~-G~KMSKS~GN~-I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+.+.|.|+..... .=--+....|. ..| ..+++.+|. ++ |+|||||.+|. |++.| +++.+|=-+.+
T Consensus 185 ~v~~G~DQ~~~~~-l~rdl~~r~~~--~~p-~~l~~pll~gl~~G~KMSKS~~ns~I~L~D------~p~~i~kKI~k 252 (394)
T 2dlc_X 185 CQFGGVDQRKIFV-LAEENLPSLGY--KKR-AHLMNPMVPGLAQGGKMSASDPNSKIDLLE------EPKQVKKKINS 252 (394)
T ss_dssp EEEEEGGGHHHHH-HHHHHGGGGTC--CCC-EEEEECCCCCCC----------CCSCBTTC------CHHHHHHHHHH
T ss_pred EEecCccHHHHHH-HHHHHHHHcCC--CCC-EEEecccccCCCCCCcCCCCCCCCEEeccC------CHHHHHHHHHH
Confidence 6778999965432 22233344443 333 344456664 78 99999999996 88765 24667776665
No 41
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=97.56 E-value=0.00013 Score=75.33 Aligned_cols=69 Identities=16% Similarity=0.047 Sum_probs=42.4
Q ss_pred EEEEeecccchhHh---HHHHHhhcCCCCccCcceEEe-eeeee-cCCc-cccccCCcccCchhhhhcCCCchhHHHHHH
Q 006917 312 YQFMGKDNAPFHTV---MFPSTLLGTEENWTLMKTISV-TEYLN-YEAG-KFSKSKGVGVFGNDVKDTNIPAEVWRYYLI 385 (625)
Q Consensus 312 i~~~GkD~~~fH~~---~~pa~l~a~~~~~~~~~~i~~-hg~l~-~~G~-KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll 385 (625)
+..+|.|+..+... +-..+-...|.-++.|..++. +..|. ++|. |||||.||.|++.|= ++.++=.+.
T Consensus 165 ~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~------p~~i~~Ki~ 238 (351)
T 1yi8_B 165 LVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS------ADEVARKVM 238 (351)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC------HHHHHHHHH
T ss_pred EEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCCC------HHHHHHHHH
Confidence 88899999754321 111111122311335665554 34554 7997 999999999887652 566777776
Q ss_pred h
Q 006917 386 T 386 (625)
Q Consensus 386 ~ 386 (625)
+
T Consensus 239 ~ 239 (351)
T 1yi8_B 239 G 239 (351)
T ss_dssp T
T ss_pred h
Confidence 5
No 42
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=97.53 E-value=0.00042 Score=70.50 Aligned_cols=77 Identities=10% Similarity=0.072 Sum_probs=44.9
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006917 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAV 104 (625)
Q Consensus 25 ~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 104 (625)
+++.|.++. -|+|.+|||| ..+ + -.+.+++ ..|+++.++.| |.|+.-. . ..++ +-+.++...+.++
T Consensus 27 ~~~~vy~G~-~PTg~lHlGh-l~~-l--~~~~~lQ-~~g~~~~~~i~-D~~a~~~----~--~~~~-e~i~~~~~~~~~~ 92 (314)
T 2zp1_A 27 DEKSAYIGF-EPSGKIHLGH-YLQ-I--KKMIDLQ-NAGFDIIILLA-DLAAYLN----Q--KGEL-DEIRKIGDYNKKV 92 (314)
T ss_dssp SSEEEEEEE-CCCSSCBHHH-HHH-H--HHHHHHH-HTTEEEEEEEC-HHHHHHT----T--CCCH-HHHHHHHHHHHHH
T ss_pred CCCEEEEcc-CCCCCcchhh-HHH-H--HHHHHHH-HCCCCEEEEEe-cceEecC----C--CCCH-HHHHHHHHHHHHH
Confidence 345555554 5679999999 654 3 3444544 45999877654 2222210 0 1133 3445555778888
Q ss_pred HhhcCccccccc
Q 006917 105 YNWFNISFDEFG 116 (625)
Q Consensus 105 ~~~lgi~~D~~~ 116 (625)
+.++|++ ..|+
T Consensus 93 ~~a~G~d-~~~~ 103 (314)
T 2zp1_A 93 FEAMGLK-AKYV 103 (314)
T ss_dssp HHHTTCC-CEEE
T ss_pred HHhcCCC-eEEE
Confidence 8999987 4343
No 43
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=97.50 E-value=0.00015 Score=75.37 Aligned_cols=76 Identities=9% Similarity=-0.047 Sum_probs=45.2
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006917 26 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVY 105 (625)
Q Consensus 26 ~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 105 (625)
++.|.++. -|+|.+|||| ..+ + -.+.+++ ..|+++.++.| |.|+.-. ...|.++++ +.++...+..++
T Consensus 35 ~~~iy~G~-~PTg~lHlG~-l~~-l--~~~~~lQ-~~G~~~~~~ia-D~~a~~~----~ps~~~~e~-i~~~~~~~~~~~ 102 (364)
T 2cya_A 35 RIKGYIGY-EPSGVAHIGW-LVW-M--YKVKDLV-EAGVDFSVLEA-TWHAYIN----DKLGGDMDL-IRAAARIVRRVM 102 (364)
T ss_dssp CCEEEEEE-CCCSSCBTHH-HHH-H--HHHHHHH-HTTCEEEEEEC-HHHHHHT----TGGGGCHHH-HHHHHHHHHHHH
T ss_pred CCEEEecc-CCCCCccHhH-HHH-H--HHHHHHH-HCCCCEEEEEe-CcchhhC----CCCCCCHHH-HHHHHHHHHHHH
Confidence 34444554 5679999999 554 3 3444444 46999877765 3333211 111234443 334446677889
Q ss_pred hhcCcccc
Q 006917 106 NWFNISFD 113 (625)
Q Consensus 106 ~~lgi~~D 113 (625)
.++|++++
T Consensus 103 la~G~dp~ 110 (364)
T 2cya_A 103 EAAGVPVE 110 (364)
T ss_dssp HHTTCCGG
T ss_pred HHhCCCcc
Confidence 99999876
No 44
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=97.49 E-value=0.00055 Score=72.43 Aligned_cols=65 Identities=15% Similarity=0.042 Sum_probs=43.0
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCc-cccccCCcccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAG-KFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~-KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+..+|.|+.+ |..+=--+....|. .|...+.+.+|. ++|. |||||.||.|++.| +++.++=++.+
T Consensus 190 l~~gG~DQ~~-ni~l~rdlarr~~~---~~~~~lt~pll~gldG~~KMSKS~~n~I~L~d------sp~~i~~Ki~~ 256 (432)
T 1h3f_A 190 VEMGGTDQRF-NLLVGREVQRAYGQ---SPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE------PPEAMFKKLMR 256 (432)
T ss_dssp EEEEEGGGHH-HHHHHHHHHHHTTC---CCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS------CHHHHHHHHHT
T ss_pred EEEechHHHH-HHHHHHHHHHHhCC---CCceEeecccccCCCCccccCcCCCCeeCCCC------CHHHHHHHHhC
Confidence 8899999964 43222222233443 234455666765 7996 99999999998876 45666666665
No 45
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=97.39 E-value=0.00018 Score=73.55 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=39.6
Q ss_pred CCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccc
Q 006917 35 YVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFD 113 (625)
Q Consensus 35 y~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~D 113 (625)
-|+|.+||||..++ + --+.+++ .|+++.+..| |.|+.-. . .+++ -+.++...+.+++.++|++++
T Consensus 9 ~PTG~lHlGn~vg~-l--~~~~~lQ--~g~~~~~~Ia-D~ha~~~-~------~~~e-~i~~~~~~~~~~~la~Gldp~ 73 (328)
T 1i6k_A 9 QPSGVITIGNYIGA-L--RQFVELQ--HEYNCYFCIV-DQHAITV-W------QDPH-ELRQNIRRLAALYLAVGIDPT 73 (328)
T ss_dssp CCCSCCBHHHHHHT-H--HHHHHHT--TTSEEEEEEC-HHHHTTS-C------CCHH-HHHHHHHHHHHHHHHTTCCTT
T ss_pred CCCCcccHHHHHHH-H--HHHHHHH--cCCcEEEEEe-CceeecC-C------CCHH-HHHHHHHHHHHHHHHhCCChh
Confidence 45699999998874 4 1222322 2999866554 3333211 0 3444 344455677788899999887
No 46
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=97.35 E-value=0.00014 Score=75.06 Aligned_cols=71 Identities=10% Similarity=0.084 Sum_probs=40.8
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNW 107 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 107 (625)
.|.++. -|+|.+||||..++ + --+.+++ . |+++.+..+ |.|+.-.- .+|+++ ..+...+..++.+
T Consensus 6 ~i~sG~-~PTG~lHLGn~vg~-l--~~~~~lQ-~-~~~~~~~Ia-D~ha~~~~-------~d~~~i-~~~~~~~~~~~lA 70 (348)
T 2yy5_A 6 RALTGI-QASGKQHLGNYLGV-M--QSLIELQ-E-QCQLFVFVA-DLHSITVD-------FQPQAL-KQNNFDLVRTLLA 70 (348)
T ss_dssp EEEEEE-CCCTTCBHHHHHHT-G--GGHHHHH-H-HSEEEEEEC-HHHHTTSC-------CCHHHH-HHHHHHHHHHHHH
T ss_pred EEEEee-CCCCcccHHHHHHH-H--HHHHHHH-h-CCcEEEEEc-ChhhccCC-------CCHHHH-HHHHHHHHHHHHH
Confidence 344444 56699999998874 4 1222333 3 788766543 33322110 344433 3344566677888
Q ss_pred cCcccc
Q 006917 108 FNISFD 113 (625)
Q Consensus 108 lgi~~D 113 (625)
+|++++
T Consensus 71 ~Gldp~ 76 (348)
T 2yy5_A 71 VGLDPQ 76 (348)
T ss_dssp TTCCTT
T ss_pred hCCChh
Confidence 999887
No 47
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=97.33 E-value=0.0037 Score=65.25 Aligned_cols=78 Identities=8% Similarity=-0.055 Sum_probs=46.2
Q ss_pred CCcEEEEcCCCCCC-CcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006917 24 KRNILITSALPYVN-NVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHK 102 (625)
Q Consensus 24 ~~~~~i~~~~Py~n-g~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 102 (625)
++++.|.++. -|+ |.+||||... ...++++++..|..|.+..| |.| ....+...++++ +.++...+.
T Consensus 72 g~~~~vy~G~-~PTa~~lHlGh~v~----~~~~~~lQ~~~~~~v~i~I~-D~~-----~~~~r~~~~~e~-i~~~~~~~~ 139 (393)
T 3hv0_A 72 GELFYLYTGR-GPSSESLHVGHLVP----FLFTKYLQDTFKVPLVIQLT-DDE-----KFIFKSNLTLEE-THNYAYENM 139 (393)
T ss_dssp TCCCEEEEEE-CCSSSSCBSTTHHH----HHHHHHHHHHHCCCEEEEEC-HHH-----HHHHCTTCCHHH-HHHHHHHHH
T ss_pred CCCeEEEeCC-CCCCCCccHHHHHH----HHHHHHHHHhcCCCeEeecc-ChH-----HHhhccCCCHHH-HHHHHHHHH
Confidence 3456777776 677 7899999654 34456666655777766432 221 111122455444 445555666
Q ss_pred HHHhhcCcccc
Q 006917 103 AVYNWFNISFD 113 (625)
Q Consensus 103 ~~~~~lgi~~D 113 (625)
+++.++|++.+
T Consensus 140 ~~~lA~GlDp~ 150 (393)
T 3hv0_A 140 KDIIACGFDPE 150 (393)
T ss_dssp HHHHTTCCCTT
T ss_pred HHHHHcCCCCc
Confidence 77777888765
No 48
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=97.14 E-value=0.0025 Score=71.41 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=44.7
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006917 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAV 104 (625)
Q Consensus 25 ~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 104 (625)
+++.|.++. -|+|.+|||| + ++..-.++++ ...|++|.++.| |-|+.-. ...+.++++ +..+...+.++
T Consensus 39 ~~~~vy~G~-~PTg~lHLG~--~-v~~~~~~~~l-Q~~G~~~~~lIa-D~ha~~~----d~~~~~~e~-i~~~~~~~~~~ 107 (690)
T 3p0j_A 39 PLIRCYDGF-EPSGRMHIAQ--G-IFKAVNVNKC-TAAGCEFVFWVA-DWFALMN----DKVGGELEK-IRIVGRYLIEV 107 (690)
T ss_dssp TTEEEEEEE-CCCSCCBHHH--H-HHHHHHHHHH-HHTTEEEEEEEC-CGGGGGG----CTTTTHHHH-HHHHHHHHHHH
T ss_pred CCceEEeee-cCCCcchhHh--h-HHHHHHHHHH-HHCCCcEEEEEe-eeEEEec----CCCcchHHH-HHHHHHHHHHH
Confidence 345666665 6779999999 3 3312224444 456999887765 5454311 011222232 33344556677
Q ss_pred HhhcCcccc
Q 006917 105 YNWFNISFD 113 (625)
Q Consensus 105 ~~~lgi~~D 113 (625)
+.++|++.+
T Consensus 108 ~lA~GlDp~ 116 (690)
T 3p0j_A 108 WKAAGMDMD 116 (690)
T ss_dssp HHHTTCCGG
T ss_pred HHHcCCChH
Confidence 888888776
No 49
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=95.39 E-value=0.017 Score=60.78 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=44.2
Q ss_pred EEEEeecccchhHhHHHHHhhcC-CCCccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGT-EENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~-~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+..+|.|+.+....- .-+.... +. .+...+.+.+|. ++|+|||||.||.|++.|- ..+++.++=++.+
T Consensus 188 i~~gG~DQ~~ni~lg-rdlarr~~~~---~~~~~lt~pll~~ldG~KMSKS~~naI~L~d~---~tsp~~i~qki~~ 257 (419)
T 2ts1_A 188 LQIGGSDQWGNITAG-LELIRKTKGE---ARAFGLTIPLVTKADGTKFGKTESGTIWLDKE---KTSPYEFYQFWIN 257 (419)
T ss_dssp EEEEEGGGHHHHHHH-HHHHHHHHC-----CCEEEEECCCCCTTSCCTTCCSSCCCBSSTT---TSCHHHHHHHHHT
T ss_pred EEeccHHHHHHHHHH-HHHHHHhcCC---CCeeecccccccCCCcccccCCCCCeEecCCC---CCCHHHHHHHHhc
Confidence 788999996543211 1111222 22 123444556664 8999999999999999872 5678888888776
No 50
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=95.36 E-value=0.012 Score=59.92 Aligned_cols=68 Identities=15% Similarity=0.058 Sum_probs=44.5
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+.++|.|+..+... =--+....+.. +...+.+..|. ++|+|||||.||.|++.| + +.+++.++=++.+
T Consensus 194 v~~gG~DQ~~~i~l-~rdla~r~n~~---~~~~l~~pll~gldG~KMSKS~~n~I~L~d--~-~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 194 LCIGGSDQWGNITS-GIDLTRRLHQN---QVFGLTVPLITKADGTKFGKTEGGAVWLDP--K-KTSPYKFYQFWIN 262 (322)
T ss_dssp EEEECTTCHHHHHH-HHHHHHHHHCC---CCEEEECCCCBCTTSCBTTEETTEECBSST--T-TSCHHHHHHHHHT
T ss_pred EEecCchhHHHHHH-HHHHHHHhCCC---CceeeccCccCCCCcccccCCCCCeeeccC--C-CCCHHHHHHHHhC
Confidence 88889999654321 11111122221 22334455554 799999999999999988 2 6788888888876
No 51
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=95.35 E-value=0.02 Score=60.31 Aligned_cols=68 Identities=15% Similarity=0.028 Sum_probs=44.7
Q ss_pred EEEEeecccchhHhHHHHHhhcC-CCCccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGT-EENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~-~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+..+|.|+.+....- .-+.... +. .+...+.+.+|. ++|+|||||.||.|++.|- ..+++.++=++.+
T Consensus 189 i~~gG~DQ~~ni~~g-rdla~r~~~~---~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~---~tsp~~i~~ki~~ 258 (420)
T 1jil_A 189 IQVGGSDQWGNITSG-IELMRRMYGQ---TDAYGLTIPLVTKSDGKKFGKSESGAVWLDAE---KTSPYEFYQFWIN 258 (420)
T ss_dssp EEEEEGGGHHHHHHH-HHHHHHHHCC---CCCEEEEECCCBCTTSCBTTBCSSSBCBSSTT---TSCHHHHHHHHHT
T ss_pred EEeccHHHHHHHHHH-HHHHHHhcCC---CCeeEeecccccCCccccccCCCCCeEecCCC---CCCHHHHHHHHhc
Confidence 788999996543211 1111222 22 123444556664 8999999999999999872 5678888888776
No 52
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.30 E-value=0.016 Score=59.67 Aligned_cols=68 Identities=13% Similarity=-0.026 Sum_probs=33.9
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+..+|.|+...... =--+....+. .+...+.+.+|. ++|+|||||.||.|++.|- ..+++.++=++.+
T Consensus 213 i~p~G~DQ~~~i~l-~rdla~r~n~---~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~---~tsp~~i~~ki~~ 281 (356)
T 2pid_A 213 VQLGGSDQLGNIMS-GYEFINKLTG---EDVFGITVPLITSTTGAKLGKSAGNAVWLNRD---KTSPFELYQFFVR 281 (356)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHHSS---CCCEEEEECCCC-------------CCBSSTT---TSCHHHHHHHHHT
T ss_pred EEeccHHHHHHHHH-HHHHHHHhCC---CCccccccccccCCCcccccCCCCCeeeccCC---CCCHHHHHHHHHc
Confidence 88899999654321 1111222232 123344456664 7999999999999999873 5678888888886
No 53
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=95.06 E-value=0.023 Score=59.87 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=44.0
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCCc-ccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKGV-GVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN-~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+..+|.|+.+.... =.-+....+. .+...+.+-+|. ++|+|||||.|| .|++.|- ..+++.++=++.+
T Consensus 190 i~~gG~DQ~~ni~l-grdlarr~~~---~~~~~l~~plL~~ldG~KMSKS~~nsaI~L~d~---~tsp~~i~qki~~ 259 (432)
T 2jan_A 190 LQIGGADQWGNIIA-GVRLVRQKLG---ATVHALTVPLVTAADGTKFGKSTGGGSLWLDPQ---MTSPYAWYQYFVN 259 (432)
T ss_dssp EEEECSTTHHHHHH-HHHHHHHHHC---CCCEEEECCCCBCTTSCBTTBCSSSCBCBSSTT---TSCHHHHHHHHHT
T ss_pred EEeccHHHHHHHHH-HHHHHHHhCC---CCccccccccccCCCcCcCCCCCCCCeEEccCC---CCCHHHHHHHHhc
Confidence 88899999643321 1111112222 123344455664 799999999999 9999872 5678888888776
No 54
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=94.61 E-value=0.037 Score=57.41 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=50.7
Q ss_pred CCCcccccCCCCCCCCCC-CcEE----EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHH
Q 006917 7 EPDGERNHRVAKLPVPGK-RNIL----ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATET 81 (625)
Q Consensus 7 ~~~~~~~~~~~~~p~~~~-~~~~----i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~ 81 (625)
.||+.+.-.....-...+ ++++ |.++. -|+|.+||||..++ + .- +.+.+ .|+++++.. .|.|..-.
T Consensus 11 ~~~~hrdld~il~~~e~g~~p~~m~~ri~sG~-~PTG~lHLGhyvGa-l-~~-~~~LQ--~~~~~~~~I-aD~hAlt~-- 81 (388)
T 3prh_A 11 IPNPLLGLDSTENLYFQGIDPFTMKQTIFSGI-QPSGSVTLGNYIGA-M-KQ-FVELQ--HDYNSYFCI-VDQHAITV-- 81 (388)
T ss_dssp ------------------------CCEEEEEE-CCCSCCBHHHHHHT-H-HH-HHHTT--TTSEEEEEE-CHHHHTTS--
T ss_pred CCCccCCHHHHHHHHHcCCCCcccCCeEEEee-CCCCcchHHHHHHH-H-HH-HHHHH--ccCcEEEEE-ecceeeec--
Confidence 466665433333333333 6777 77776 78899999998873 5 21 12222 399987765 35554321
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhcCcccc---cccCCCChhHHHH
Q 006917 82 KAMEENCTTQQICDKYYAIHKAVYNWFNISFD---EFGRTSTPQQTEI 126 (625)
Q Consensus 82 ~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~D---~~~~t~~~~~~~~ 126 (625)
..++.++ .++......++.+.|++.+ .|..+.-++|.+.
T Consensus 82 -----~~~~~~l-r~~~~~~aa~~lA~GlDp~kt~if~qS~v~~~~el 123 (388)
T 3prh_A 82 -----PQDRLEL-RKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQA 123 (388)
T ss_dssp -----CCCHHHH-HHHHHHHHHHHHHTTCCTTTEEEEEGGGSTHHHHH
T ss_pred -----CCCHHHH-HHHHHHHHHHHHHhCCChhHeEEEecccccchHHH
Confidence 2355544 4444567778888999987 3444444555433
No 55
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=94.34 E-value=0.032 Score=57.96 Aligned_cols=65 Identities=18% Similarity=0.029 Sum_probs=35.0
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCccccccCCc-ccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAGKFSKSKGV-GVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~KMSKS~GN-~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+.++|.|+..... +=--+....|. ..|. .+++.+|. ++|+|||||.|| .|++.| +++.++=.+.+
T Consensus 181 ~v~~G~DQ~~~~~-l~rdl~~r~~~--~~p~-~l~~pll~gldG~KMSKS~~ns~I~L~d------~p~~i~kKi~~ 247 (372)
T 1n3l_A 181 AQFGGIDQRKIFT-FAEKYLPALGY--SKRV-HLMNPMVPGLTGSKMSSSEEESKIDLLD------RKEDVKKKLKK 247 (372)
T ss_dssp EEEEEGGGHHHHH-HHHHHGGGGTC--CCCE-EEEECCCCCSSCC-------CCSCBTTC------CHHHHHHHHHT
T ss_pred EEEcChhHHHHHH-HHHHHHHHcCC--CCCE-EEecCccCCCCcccccCCCCCCeEeccC------CHHHHHHHHHH
Confidence 7789999965432 22222333443 3343 44456664 899999999999 788765 25677777765
No 56
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=94.20 E-value=0.067 Score=55.65 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=55.1
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHH-CCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006917 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRL-RGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHK 102 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~-~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 102 (625)
++++.|.++. -|+|.+||||..+. + . .|++.. .|+++.++.+ |.|..-. ..+.++.+ +.++.....
T Consensus 71 ~~p~~i~sG~-~PTG~lHLGh~v~~-~---~-~~~lQ~~~g~~~~i~Ia-D~ha~~~-----~~~~~~e~-i~~~~~~~~ 137 (392)
T 3jxe_A 71 GRGFFLYTGR-GPSGPMHIGHIIPF-F---A-TKWLQEKFGVNLYIQIT-DDEKFLF-----KENLTFDD-TKRWAYDNI 137 (392)
T ss_dssp TCCCEEEEEE-CCSSCCBHHHHHHH-H---H-HHHHHHHHCCEEEEEEC-HHHHHHH-----CSSCCHHH-HHHHHHHHH
T ss_pred CCCeEEEecc-CCCCchhHHHHHHH-H---H-HHHHHHhcCCceEEEec-chHHhhc-----CCCCCHHH-HHHHHHHHH
Confidence 4556666665 56699999997753 2 2 344444 7999888776 5553211 11345544 444455667
Q ss_pred HHHhhcCcccc---cccCCCChhHHHHHHH
Q 006917 103 AVYNWFNISFD---EFGRTSTPQQTEICQA 129 (625)
Q Consensus 103 ~~~~~lgi~~D---~~~~t~~~~~~~~v~~ 129 (625)
+++.++|++.+ .|..+.-+.|...+..
T Consensus 138 ~~~lA~GlDp~kt~i~~qS~~~~~~~~~~~ 167 (392)
T 3jxe_A 138 LDIIAVGFDPDKTFIFQNSEFTKIYEMAIP 167 (392)
T ss_dssp HHHHTTCCCTTSEEEEETTTSTHHHHHHHH
T ss_pred HHHHHhCcCccceEEEECchhHHHHHHHHH
Confidence 77888999887 3333443444444444
No 57
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=93.71 E-value=0.037 Score=56.67 Aligned_cols=69 Identities=14% Similarity=0.035 Sum_probs=42.1
Q ss_pred EEEEeecccchhHh---HHHHHhhcCCCCccCcceEEee--eeee-cCC-ccccccCCcccCchhhhhcCCCchhHHHHH
Q 006917 312 YQFMGKDNAPFHTV---MFPSTLLGTEENWTLMKTISVT--EYLN-YEA-GKFSKSKGVGVFGNDVKDTNIPAEVWRYYL 384 (625)
Q Consensus 312 i~~~GkD~~~fH~~---~~pa~l~a~~~~~~~~~~i~~h--g~l~-~~G-~KMSKS~GN~I~~~d~l~~~~g~D~lR~~l 384 (625)
+..+|.|+...... +-+.+-...|.-++.|..++.. .+|. ++| +|||||.||.|++.| +++.++=.+
T Consensus 144 lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d------~p~~i~~Ki 217 (337)
T 2el7_A 144 TVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE------PEESIWQKI 217 (337)
T ss_dssp EEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS------CHHHHHHHH
T ss_pred EEEcccchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCCeeeCcC------CHHHHHHHH
Confidence 78899999764332 1111111113112345544432 3554 899 999999999998875 256777777
Q ss_pred Hh
Q 006917 385 IT 386 (625)
Q Consensus 385 l~ 386 (625)
.+
T Consensus 218 ~~ 219 (337)
T 2el7_A 218 QH 219 (337)
T ss_dssp HT
T ss_pred Hh
Confidence 76
No 58
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=92.70 E-value=0.15 Score=52.81 Aligned_cols=78 Identities=10% Similarity=0.061 Sum_probs=50.4
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006917 23 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHK 102 (625)
Q Consensus 23 ~~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 102 (625)
.+++++|.++. -|+|.+||||..+ .+ -.+++...|++|.+.. .|.|-.-. ......+....+.....
T Consensus 67 ~gk~~~v~sG~-~PTG~lHLGhyv~-~~----~~~~lq~~~~~~~~~I-aD~ha~t~------~~~~~~e~~r~~~~~~~ 133 (372)
T 3a04_A 67 RGERVAVLTGF-MPSGKFHFGHKLT-VD----QLIYLQKNGFKVFVAI-ADAEAFAV------RRIGREEAVRIAVEEYI 133 (372)
T ss_dssp TTCCCEEEEEE-CCCSCCBHHHHHH-HH----HHHHHHHTTCEEEEEE-CHHHHHHT------TCCCHHHHHHHHHHTTH
T ss_pred cCCCCEEEeCc-CCCcHhHHHHHHH-HH----HHHHHHhCCCeEEEEE-ecchhhcc------CCCCCHHHHHHHHHHHH
Confidence 45678888887 7899999999764 23 2445555699986654 45553211 12233344555556666
Q ss_pred HHHhhcCcccc
Q 006917 103 AVYNWFNISFD 113 (625)
Q Consensus 103 ~~~~~lgi~~D 113 (625)
.++-++|++++
T Consensus 134 ~~~lA~GlDP~ 144 (372)
T 3a04_A 134 ANMIALGLDPK 144 (372)
T ss_dssp HHHHHHTCCTT
T ss_pred HHHHHcCCChH
Confidence 77888999887
No 59
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=92.23 E-value=0.23 Score=51.44 Aligned_cols=77 Identities=14% Similarity=0.058 Sum_probs=47.9
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006917 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKA 103 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 103 (625)
++++.|.++. -|+|.+||||..+ +.++.++++..|..|.++.+ |.+ +......+++++ .++...+.+
T Consensus 80 ~~~~~vysG~-~PTG~lHLGh~v~----~~~~~~lQ~~~g~~v~i~I~-D~~------a~~~r~~~~e~i-~~~~~~~~~ 146 (386)
T 3hzr_A 80 KKPTFIFIQK-YPQKEVALEEYIT----LEFARYLQDAFNIQVIIQIL-DDI------KVLNREATINEA-SKMSNDLMK 146 (386)
T ss_dssp TCCEEEEEEE-CCCSSCBGGGHHH----HHHHHHHHHHHCCEEEEEEC-HHH------HHHTTSCCHHHH-HHHHHHHHH
T ss_pred CCCeEEEecc-CCCCCccHHHHHH----HHHHHHHHHhcCCeEEEEeC-chH------HhhcCCCCHHHH-HHHHHHHHH
Confidence 4567777776 7889999999654 34455555556888887733 222 111112455544 444446667
Q ss_pred HHhhcCcccc
Q 006917 104 VYNWFNISFD 113 (625)
Q Consensus 104 ~~~~lgi~~D 113 (625)
++-++|++.+
T Consensus 147 ~~lA~GlDp~ 156 (386)
T 3hzr_A 147 YILAFGFNED 156 (386)
T ss_dssp HHHHTCCCGG
T ss_pred HHHHcCCCCc
Confidence 7888898876
No 60
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=92.16 E-value=0.072 Score=55.54 Aligned_cols=77 Identities=9% Similarity=-0.053 Sum_probs=47.3
Q ss_pred CCcEEEEcCCCCCCC-cccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006917 24 KRNILITSALPYVNN-VPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHK 102 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng-~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 102 (625)
++++.|.++. -|+| .+||||... ...++++++..|..|.++.|-+.+ +.....++++ +.++...+.
T Consensus 76 ~~~~~vy~G~-~PTg~~lHLGh~v~----~~~~~~lQ~~~~~~v~i~I~D~~~-------~l~~~~~~e~-i~~~~~~~~ 142 (395)
T 3i05_A 76 GQPFYLYTGR-GPSSESMHMGHLIP----FMFTKWLQDSFRVPLVIQMTDDEK-------FYFRNIPMEQ-VEAMTTENI 142 (395)
T ss_dssp TCCEEEEEEE-CCCSSCCBGGGSHH----HHHHHHHHHHHTCCEEEEECHHHH-------HHHSCCCHHH-HHHHHHHHH
T ss_pred CCCeEEEEee-cCCCccchHHHHHH----HHHHHHHHHhcCCcEEEEEcchHH-------HhcCCCCHHH-HHHHHHHHH
Confidence 4567777776 7889 799999653 445555555558888776332221 1122345544 444555666
Q ss_pred HHHhhcCcccc
Q 006917 103 AVYNWFNISFD 113 (625)
Q Consensus 103 ~~~~~lgi~~D 113 (625)
+++.++|++.+
T Consensus 143 ~~~lA~GlDp~ 153 (395)
T 3i05_A 143 KDIIAMGFDPE 153 (395)
T ss_dssp HHHHTTTCCTT
T ss_pred HHHHHcCCCCC
Confidence 77777787665
No 61
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=92.03 E-value=0.094 Score=54.65 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=32.0
Q ss_pred eEEeeeeee-cCCccccccCCcccCchhhhhcCCCchhHHHHHHh
Q 006917 343 TISVTEYLN-YEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 343 ~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
..+.+.+|. ++|+|||||.||.|++.|- .-+++.++=++.+
T Consensus 279 ~~l~~pll~~ldG~KMSKS~~naI~L~d~---~tsp~~i~qki~~ 320 (392)
T 1y42_X 279 VGFTVPLLTDSSGAKFGKSAGNAIWLDPY---QTSVFDFYGYFVR 320 (392)
T ss_dssp EEEECCCCBCTTCCBTTBCSSSBCBSSTT---TSCHHHHHHHHHT
T ss_pred cccccccCcCCchhhccCCCCCeeeccCC---CCCHHHHHHHHHc
Confidence 444556665 8999999999999999873 4677778777776
No 62
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=91.70 E-value=0.28 Score=50.84 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=40.2
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHH---HHHHHHH-HHH
Q 006917 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQI---CDKYYAI-HKA 103 (625)
Q Consensus 28 ~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~---~~~~~~~-~~~ 103 (625)
.|.++. -|+|.+||||..+. + .+.++++ .|+++.+..| |.|+.-.- -.++.++ ...+.+. +..
T Consensus 37 ~vy~G~-~PTG~lHlG~~~~~-l---~~~~~~q-~g~~~i~~I~-D~ha~t~~------~~~~~~l~~~~~~~~~~~i~~ 103 (372)
T 1n3l_A 37 KIYWGT-ATTGKPHVAYFVPM-S---KIADFLK-AGCEVTILFA-DLHAYLDN------MKAPWELLELRVSYYENVIKA 103 (372)
T ss_dssp EEEEEE-CCSSCCBGGGHHHH-H---HHHHHHH-TTCEEEEEEC-HHHHHHTT------TTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCc-CCCCcccHHHHHHH-H---HHHHHHH-CCCCEEEEEc-CCceeeCC------CCCHHHHHHHHHHHHHHHHHH
Confidence 444554 37799999998763 4 2555555 6888776554 21111000 0122332 3333333 555
Q ss_pred HHhhcCcccc
Q 006917 104 VYNWFNISFD 113 (625)
Q Consensus 104 ~~~~lgi~~D 113 (625)
.+.++|++++
T Consensus 104 ~lla~Gldp~ 113 (372)
T 1n3l_A 104 MLESIGVPLE 113 (372)
T ss_dssp HHHHHTCCCT
T ss_pred HHHHcCCChh
Confidence 6788899887
No 63
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=91.60 E-value=0.11 Score=54.79 Aligned_cols=78 Identities=8% Similarity=0.005 Sum_probs=46.7
Q ss_pred CCcEEEEcCCCCCC-CcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006917 24 KRNILITSALPYVN-NVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHK 102 (625)
Q Consensus 24 ~~~~~i~~~~Py~n-g~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 102 (625)
++++.|.++. -|+ |.|||||... ++ .+.++++..|+++.++.| |.|+.-- ....++.. +.++.....
T Consensus 100 g~~~~vy~G~-dPTag~LHLGh~v~-~~---~l~~lQ~~~g~~~i~lI~-D~ta~l~-----~~~~t~e~-i~~~~~~~~ 167 (432)
T 2ip1_A 100 GKPFFLYTGR-GPSSDSMHLGHMIP-FV---FTKWLQEVFDVPLVIELT-DDEKFLF-----KHKLTIND-VKNFARENA 167 (432)
T ss_dssp TCCCEEEEEE-CCCSSCCBGGGHHH-HH---HHHHHHHHHTCCEEEEEC-HHHHHHH-----CTTCCHHH-HHHHHHHHH
T ss_pred CCCeEEEEee-cCCCCCccHHHHHH-HH---HHHHHHHHcCCeEEEEEe-cccceeC-----CCCCCHHH-HHHHHHHHH
Confidence 3456777776 677 8999999774 22 344555447998877776 4333210 00144433 445555556
Q ss_pred HHHhhcCcccc
Q 006917 103 AVYNWFNISFD 113 (625)
Q Consensus 103 ~~~~~lgi~~D 113 (625)
.++.++|+..+
T Consensus 168 ~~~lA~GlDp~ 178 (432)
T 2ip1_A 168 KDIIAVGFDPK 178 (432)
T ss_dssp HHHHTTTCCGG
T ss_pred HHHHHhCCCCC
Confidence 66777787765
No 64
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=91.39 E-value=0.15 Score=52.80 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=38.1
Q ss_pred EeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCc-ccccc-CCcccCchhhhhcCCCchhHHHHHHh
Q 006917 315 MGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAG-KFSKS-KGVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 315 ~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~-KMSKS-~GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+|.|+.++... =--+....+. +.| .++.+.+|. ++|. ||||| .+|.|++.| +++.++=-+.+
T Consensus 230 vG~DQ~~hl~l-~Rdla~r~n~--~~p-~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D------~p~~i~kKI~k 294 (386)
T 3hzr_A 230 DSIKNVQFHSI-IDQIATTLNF--IQP-TVLFHKMVPLLSGVTKFDIPSDHNSILLSD------NAKQVERKINK 294 (386)
T ss_dssp EEGGGHHHHHH-HHHHHHHHTC--CCC-EEEEECCCCCTTCTTCCCCCCTTTSCBTTC------CHHHHHHHHHH
T ss_pred cccchHHHHHH-HHHHHHHcCC--CCc-eEeecCeeeCCCCCCccCcCCCCCeeecCC------CHHHHHHHHHH
Confidence 59999754322 1122233343 344 455566665 7885 99999 899998765 34556665554
No 65
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=91.24 E-value=0.14 Score=54.03 Aligned_cols=77 Identities=10% Similarity=-0.010 Sum_probs=45.1
Q ss_pred CCcEEEEcCCCCCC-CcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006917 24 KRNILITSALPYVN-NVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHK 102 (625)
Q Consensus 24 ~~~~~i~~~~Py~n-g~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 102 (625)
++++.|.++. -|+ |.|||||... ++ .+.++++..|+++.++.|=. |+.-- . ..++++ +.++...+.
T Consensus 106 ~~~~~vy~G~-dPTag~LHLGh~v~-~~---~~~~lQ~~~G~~~iilIgD~-ta~ig--d----~lt~e~-i~~n~~~~~ 172 (437)
T 1r6u_A 106 KKPFYLYTGR-GPSSEAMHVGHLIP-FI---FTKWLQDVFNVPLVIQMTDD-EKYLW--K----DLTLDQ-AYGDAVENA 172 (437)
T ss_dssp TCCEEEEEEE-CCCSSCCBHHHHHH-HH---HHHHHHHHHTCCEEEEECHH-HHHHH--S----SCCHHH-HHHHHHHHH
T ss_pred CCCcEEEEcc-cCCCCCccHHHHHH-HH---HHHHHHHHhCCcEEEEEecc-eeeec--C----CCCHHH-HHHHHHHHH
Confidence 4567777777 677 8999999774 22 34454444799877765532 21110 0 345444 344444455
Q ss_pred HHHhhcCcccc
Q 006917 103 AVYNWFNISFD 113 (625)
Q Consensus 103 ~~~~~lgi~~D 113 (625)
.++.++|++.+
T Consensus 173 ~~~lA~GlDp~ 183 (437)
T 1r6u_A 173 KDIIACGFDIN 183 (437)
T ss_dssp HHHHTTTCCGG
T ss_pred HHHHHhCCCcc
Confidence 66667777655
No 66
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=90.98 E-value=0.17 Score=52.89 Aligned_cols=77 Identities=8% Similarity=-0.070 Sum_probs=47.5
Q ss_pred CCcEEEEcCCCCCCC-cccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006917 24 KRNILITSALPYVNN-VPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHK 102 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng-~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 102 (625)
++++.|.++. -|+| .+||||..+ +..++++++..|..+.+..| |.|... . ...+++++ .++.....
T Consensus 99 ~~p~~vy~G~-~PTg~~lHLGh~v~----~~~~~~lQ~~~g~~~~i~Ia-D~~a~l--~----~~~~~e~i-~~~~~~~~ 165 (406)
T 3tze_A 99 NRPFYLYTGR-GPSSKTMHIGHTIP----FLLCKYMQDAFKIRLVIQIT-DDEKFL--W----KSMRLEDA-MAYGRENI 165 (406)
T ss_dssp TCCEEEEEEE-CCCSSCCBGGGHHH----HHHHHHHHHHHTCCEEEEEC-HHHHHH--H----SSCCHHHH-HHHHHHHH
T ss_pred CCCeEEEEee-CCCCCcccHHHHHH----HHHHHHHHHhcCCcEEEEee-ChHHHc--C----CCCCHHHH-HHHHHHHH
Confidence 4667787776 7888 899999654 34455555555888776533 444211 1 12455444 44455666
Q ss_pred HHHhhcCcccc
Q 006917 103 AVYNWFNISFD 113 (625)
Q Consensus 103 ~~~~~lgi~~D 113 (625)
+++-++|++.+
T Consensus 166 ~~~lA~GlDp~ 176 (406)
T 3tze_A 166 KDIVTLGFDPK 176 (406)
T ss_dssp HHHHTTTCCGG
T ss_pred HHHHHcCCCcc
Confidence 67778888765
No 67
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=90.61 E-value=0.71 Score=47.98 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=22.9
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCC--ccccccCCcccCchh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEA--GKFSKSKGVGVFGND 369 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G--~KMSKS~GN~I~~~d 369 (625)
+..+|.|+.++... =--+....+. +.| .++.+-+|. ++| +|||||.||.|++.|
T Consensus 227 lvp~G~DQ~~~i~l-~Rdla~r~~~--~~p-~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 227 LIPQAIDQDPYFRL-TRDIAPRLGY--LKP-AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEEGGGHHHHHH-HHHTHHHHTC--CCC-EEEEECCCCCC-------------CCBTTC
T ss_pred EEEeccchHHHHHH-HHHHHHHcCC--CCc-eeeccccccCCCCCcccCCCCCCCcccCCC
Confidence 67889999654321 1111122333 233 344556665 788 799999999998765
No 68
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=90.45 E-value=0.7 Score=48.73 Aligned_cols=78 Identities=12% Similarity=-0.026 Sum_probs=48.5
Q ss_pred CCcEEEEcCCCCCC-CcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006917 24 KRNILITSALPYVN-NVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHK 102 (625)
Q Consensus 24 ~~~~~i~~~~Py~n-g~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 102 (625)
++++.|.++. -|+ |.+||||... .-.+.++++..|..+.+.. |++ .....+...++++ +.++...+.
T Consensus 89 g~p~~vytG~-dPTagsLHLGH~v~----~~~l~~lQ~~~g~~v~I~I-----gD~-~a~~~r~~lt~E~-I~~n~~~~~ 156 (451)
T 3foc_A 89 GHPIYIYTGR-GPSSGALHLGHLLP----FIFTKYLQDAFKCYVVIQI-----TDD-EKFLRNRSLSYAE-VDSYTRENI 156 (451)
T ss_dssp TCCEEEEEEE-CCCSSCCBHHHHHH----HHHHHHHHHHHTCEEEEEE-----CHH-HHHHHCTTCCHHH-HHHHHHHHH
T ss_pred CCCeEEEecC-CCCCCCccHHHHHH----HHHHHHHHHccCceEEEEe-----eCc-HHhhcccCCCHHH-HHHHHHHHH
Confidence 4568888877 777 8999999654 3345555555577777753 333 1111222456544 445555677
Q ss_pred HHHhhcCcccc
Q 006917 103 AVYNWFNISFD 113 (625)
Q Consensus 103 ~~~~~lgi~~D 113 (625)
+++-++|++.+
T Consensus 157 ~~~lA~GlDpe 167 (451)
T 3foc_A 157 KDIIACGFDPD 167 (451)
T ss_dssp HHHHTTTCCGG
T ss_pred HHHHHcCCCCC
Confidence 77888888765
No 69
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=90.37 E-value=0.17 Score=52.37 Aligned_cols=76 Identities=9% Similarity=0.185 Sum_probs=42.6
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006917 27 ILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYN 106 (625)
Q Consensus 27 ~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 106 (625)
..|.++. -|+|.+|||| + ++..-.++++ ...|++|.++.| |-|+.-. ...|.++.+ +..+...+.+.+.
T Consensus 57 ~~iy~G~-~PTg~lHlG~--g-vl~~~~~~~l-Q~~G~~~~~lIa-D~ha~i~----d~~~~~~~~-i~~~~~~~~~~~~ 125 (373)
T 3vgj_A 57 LICYDGF-EPSGRMHIAQ--G-LLKSIIVNKL-TSNGCTFIFWIA-DWFAHLN----NKMSGDLKK-IKKVGSYFIEVWK 125 (373)
T ss_dssp CEEEEEE-CCCSSCBHHH--H-HHHHHHHHHH-HTTTCEEEEEEC-HHHHHHT----TGGGGCHHH-HHHHHHHHHHHHH
T ss_pred ceEEeCC-CCCCCceehh--h-HHHHHHHHHH-HHCCCcEEEEEe-cceeEec----CCCCCCHHH-HHHHHHHHHHHHH
Confidence 3444544 5668999999 3 3322234454 456999887766 4444310 112233333 3344445567788
Q ss_pred hcCcccc
Q 006917 107 WFNISFD 113 (625)
Q Consensus 107 ~lgi~~D 113 (625)
++|++.+
T Consensus 126 a~G~dp~ 132 (373)
T 3vgj_A 126 SCGMNME 132 (373)
T ss_dssp HTTCCST
T ss_pred HcCCChh
Confidence 8888766
No 70
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=90.06 E-value=0.2 Score=51.40 Aligned_cols=77 Identities=9% Similarity=0.028 Sum_probs=44.1
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006917 26 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVY 105 (625)
Q Consensus 26 ~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 105 (625)
++.|.++. -|+|.+||||...+ .-.++++++ .|+++.++.| |.|+.- -...|.+++ -+.++...+.+++
T Consensus 40 ~~~vy~G~-~PTg~lHlGhyl~~---l~~~~~lQ~-~G~~~~~~i~-D~~a~~----~~~~~~~~e-~i~~~~~~~~~~~ 108 (348)
T 2j5b_A 40 IFTAYNGF-EPSGRIHIAQALIT---VMNTNNMIE-CGGQMIIYIA-DWFAKM----NLKMNGDIN-KIRELGRYFIEVF 108 (348)
T ss_dssp CEEEEEEE-CCCSSCBHHHHHHH---HHHHHHHHH-TTEEEEEEEC-HHHHHH----TTGGGGCHH-HHHHHHHHHHHHH
T ss_pred CCEEEecc-CCCCCCchhHHHHH---HHHHHHHHH-cCCcEEEEec-cchhhh----CCCCCCCHH-HHHHHHHHHHHHH
Confidence 44555554 56699999994332 345556554 5998877654 223211 011123443 3445556666777
Q ss_pred hhcCcccc
Q 006917 106 NWFNISFD 113 (625)
Q Consensus 106 ~~lgi~~D 113 (625)
.++|++.+
T Consensus 109 la~Gldp~ 116 (348)
T 2j5b_A 109 KACGINLD 116 (348)
T ss_dssp HHTTCCGG
T ss_pred HHhcCCcc
Confidence 88888776
No 71
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=90.06 E-value=0.31 Score=50.35 Aligned_cols=65 Identities=18% Similarity=0.108 Sum_probs=38.8
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcc-eEEeeeeee-c-CCc-cccccC-CcccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMK-TISVTEYLN-Y-EAG-KFSKSK-GVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~-~i~~hg~l~-~-~G~-KMSKS~-GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+..+|.|+.+++..- --+....+.. ++ .++.+.+|. + +|. |||||. +|.|++.| +++.++==+.+
T Consensus 203 ~vpgG~DQ~~~l~l~-Rdla~r~~~~---~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D------~p~~i~~KI~k 272 (373)
T 3vgj_A 203 ICQLGIDQRKVNMLA-REYCDIKKIK---KKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDD------SESDVNRKIKK 272 (373)
T ss_dssp EECCBGGGHHHHHHH-HHHHHHHTCS---CCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC------CHHHHHHHHHH
T ss_pred EEEcchhhHHHHHHH-HHHHHHhCCC---CCceEEeCCeeecCCCCCCCCcCCCCCCeeecCC------CHHHHHHHHHh
Confidence 788999997554321 1222223332 12 345566665 5 885 999999 58888764 34556655555
No 72
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=90.02 E-value=0.21 Score=53.40 Aligned_cols=75 Identities=11% Similarity=0.016 Sum_probs=44.6
Q ss_pred CCcEEEEcCCCCCC-CcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcc--cchHHHHHHHHcCCCHHHHHHHHHHH
Q 006917 24 KRNILITSALPYVN-NVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDE--YGTATETKAMEENCTTQQICDKYYAI 100 (625)
Q Consensus 24 ~~~~~i~~~~Py~n-g~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~--~G~~i~~~a~~~g~~~~~~~~~~~~~ 100 (625)
++++.|.++. -|+ |.|||||..+. + ++.++++..|+++.++.|=.+ .|+ ..++.+ +.++...
T Consensus 153 ~~~~~vy~G~-dPTag~LHLGh~v~~-~---~~~~lQ~~~g~~~iilI~D~~a~igd---------~lt~e~-i~~n~~~ 217 (477)
T 1r6t_A 153 KKPFYLYTGR-GPSSEAMHVGHLIPF-I---FTKWLQDVFNVPLVIQMTDDEKYLWK---------DLTLDQ-AYGDAVE 217 (477)
T ss_dssp TCCEEEEEEE-CCCTTCCBGGGHHHH-H---HHHHHHHHHTCCEEEEECHHHHHHHS---------SCCHHH-HHHHHHH
T ss_pred CCCcEEEEcc-cCCCCCccHHHHHHH-H---HHHHHHHHhCCcEEEEEecceeeecC---------CCCHHH-HHHHHHH
Confidence 4567777777 677 89999998752 2 344444447998776655322 121 345443 3444444
Q ss_pred HHHHHhhcCcccc
Q 006917 101 HKAVYNWFNISFD 113 (625)
Q Consensus 101 ~~~~~~~lgi~~D 113 (625)
+..++-++|++.+
T Consensus 218 ~~~~~lA~GlDp~ 230 (477)
T 1r6t_A 218 NAKDIIACGFDIN 230 (477)
T ss_dssp HHHHHHTTCCCTT
T ss_pred HHHHHHHhCCCCC
Confidence 5556666777654
No 73
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=89.64 E-value=0.51 Score=50.42 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=32.2
Q ss_pred EeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCC--ccccccCCc-ccCchh
Q 006917 315 MGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEA--GKFSKSKGV-GVFGND 369 (625)
Q Consensus 315 ~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G--~KMSKS~GN-~I~~~d 369 (625)
+|.|+.+.. .+=--+....+. +.|. .+.+-+|. ++| .|||||.+| .|++.|
T Consensus 309 vG~DQ~~~i-~l~Rdla~r~~~--~~p~-~l~~pll~gLdG~~~KMSKS~~nsaI~L~d 363 (477)
T 1r6t_A 309 CAIDQDPYF-RMTRDVAPRIGY--PKPA-LLHSTFFPALQGAQTKMSASDPNSSIFLTD 363 (477)
T ss_dssp EEGGGHHHH-HHHHHHGGGGTC--CCCE-EEEECCCEETTEEEEECCTTSTTCCCBTTC
T ss_pred ccccHHHHH-HHHHHHHHHhCC--CCce-eeecccccCCCCCccccCCCCCCCceeecC
Confidence 699996533 222222334443 3343 35556665 899 899999999 888765
No 74
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=89.56 E-value=0.68 Score=48.28 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=33.2
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCC--ccccccC-CcccCchh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEA--GKFSKSK-GVGVFGND 369 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G--~KMSKS~-GN~I~~~d 369 (625)
+..+|.|+.++... =--+....+. +.|. ++.+.+|. ++| +|||||. +|.|++.|
T Consensus 246 lvpvG~DQ~~~i~l-~Rdla~r~~~--~~p~-~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 246 LVPAAVDQDPFFRL-ARDKAKALGE--KKPS-SIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHHTC--CCCE-EEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred EEeeccchHHHHHH-HHHHHHHcCC--CCce-eeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 66789999754322 1112222343 2333 34566665 899 6999999 78997765
No 75
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=89.25 E-value=0.24 Score=51.51 Aligned_cols=65 Identities=14% Similarity=0.092 Sum_probs=38.2
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCC--ccccccCCc-ccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEA--GKFSKSKGV-GVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G--~KMSKS~GN-~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+..+|.|+.+++. +=--+....|. +.|. .+.+.+|. ++| +|||||.+| .|++.| +++.+|==+.+
T Consensus 210 ~vpvG~DQ~~hl~-l~Rdla~r~n~--~~p~-~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D------~p~~I~kKI~k 278 (392)
T 3jxe_A 210 LIPAAIDQDPYWR-LQRDFAESLGY--YKTA-ALHSKFVPSLTSLSGKMSASKPETAIYLTD------SPEDVEKKVWK 278 (392)
T ss_dssp EEEEEGGGHHHHH-HHHHHTGGGTS--CCCE-EEEECCCCCSSCSSSCCCTTSGGGCCBTTC------CHHHHHHHHHT
T ss_pred eeecccchHHHHH-HHHHHHHHcCC--CCCe-eeecccccCCCCCccccccCCCCCeeeCCC------CHHHHHHHHHh
Confidence 5588999975432 21222233343 3444 34466665 788 599999998 887654 23455544443
No 76
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=88.89 E-value=0.43 Score=50.33 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=28.1
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCC--ccccccCCc-ccCchh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEA--GKFSKSKGV-GVFGND 369 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G--~KMSKS~GN-~I~~~d 369 (625)
+..+|.|+.++.. +=--+....+. +.|. ++.+.+|. ++| +|||||.+| .|++.|
T Consensus 252 lvp~G~DQ~~~i~-l~Rdla~r~~~--~~p~-~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 252 LIPCAIDQDPYFR-VCRDVADKLKY--SKPA-LLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp EEEEEGGGHHHHH-HHHHHHHHHTS--CCCE-EEEECCCCCTTC--------CGGGCCBTTC
T ss_pred EEEeccCcHHHHH-HHHHHHHHhCC--CCce-eeccccccCCCCCccccCCCCCCCeEeccC
Confidence 5668999965432 11122233343 2343 45566665 899 899999999 898775
No 77
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=88.15 E-value=0.7 Score=48.67 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=32.1
Q ss_pred EeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCC--ccccccCCc-ccCchh
Q 006917 315 MGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEA--GKFSKSKGV-GVFGND 369 (625)
Q Consensus 315 ~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G--~KMSKS~GN-~I~~~d 369 (625)
+|.|+.+... +=--+....+. +.|. ++.+-+|. ++| +|||||.+| .|++.|
T Consensus 262 vG~DQ~~~i~-l~Rdla~r~~~--~~P~-~l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 262 CAIDQDPYFR-MTRDVAPRIGY--PKPA-LLHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp EEGGGHHHHH-HHHHHGGGGTC--CCCE-EEEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred eehhhHHHHH-HHHHHHHHhCC--CCce-EeecccccCCCCCccccCCCCCCCeeeccC
Confidence 6999964432 22222333443 3443 35566665 899 899999999 898765
No 78
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=88.01 E-value=0.58 Score=48.42 Aligned_cols=77 Identities=9% Similarity=-0.029 Sum_probs=42.9
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHH---H-HHHHHHHH
Q 006917 27 ILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQI---C-DKYYAIHK 102 (625)
Q Consensus 27 ~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~---~-~~~~~~~~ 102 (625)
+.|.++. -|+|.+||||...+ + -.++++++ .|+++.++.| |.|+.- -...|.+++++ + ..+...+.
T Consensus 34 ~~vy~G~-~PTg~lHlG~yl~~-l--~~~~~lQ~-~G~~~~~~ia-D~ha~~----~~~~g~~~e~i~~~~~~~~~~~~~ 103 (375)
T 2cyc_A 34 LQHYIGF-EISGYIHLGTGLMA-G--AKIADFQK-AGIKTRVFLA-DWHSWI----NDKLGGDLEVIQEVALKYFKVGME 103 (375)
T ss_dssp CBEEEEE-CCCSCCBHHHHHHH-H--HHHHHHHH-TTCBCEEEEC-HHHHHH----TTGGGGCHHHHHHHHHHTHHHHHH
T ss_pred cEEEeCC-CCCCCcCchHHHHH-H--HHHHHHHH-CCCcEEEEec-CcEEEc----CCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3444554 56699999994443 2 44555554 5999877654 222211 11122233333 2 33334444
Q ss_pred HHHhhcCcccc
Q 006917 103 AVYNWFNISFD 113 (625)
Q Consensus 103 ~~~~~lgi~~D 113 (625)
.++.++|++.+
T Consensus 104 ~~~la~G~dp~ 114 (375)
T 2cyc_A 104 KSIEVMGGDPK 114 (375)
T ss_dssp HHHHHTTCCGG
T ss_pred HHHHHhCCCcc
Confidence 88999999876
No 79
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=87.98 E-value=0.35 Score=50.10 Aligned_cols=68 Identities=24% Similarity=0.125 Sum_probs=40.6
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCC---c---cCcceEEeeeeee-cCC------------------ccccccC-Cccc
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEEN---W---TLMKTISVTEYLN-YEA------------------GKFSKSK-GVGV 365 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~---~---~~~~~i~~hg~l~-~~G------------------~KMSKS~-GN~I 365 (625)
+..+|.|+...+.. =--+....+.. + .....+..+.+|. ++| +|||||. +|.|
T Consensus 183 ~vp~G~DQ~~~i~l-~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I 261 (375)
T 2cyc_A 183 IAHAGMDQRKAHVI-AIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAV 261 (375)
T ss_dssp EEEEEGGGHHHHHH-HHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSC
T ss_pred eecccchHHHHHHH-HHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCee
Confidence 78899999754432 12222333320 0 1012334455664 777 8999998 7889
Q ss_pred CchhhhhcCCCchhHHHHHHh
Q 006917 366 FGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 366 ~~~d~l~~~~g~D~lR~~ll~ 386 (625)
++.|= ++.+|=.+.+
T Consensus 262 ~L~d~------p~~i~~KI~~ 276 (375)
T 2cyc_A 262 FIHDS------PEEIRQKLRK 276 (375)
T ss_dssp BTTCC------HHHHHHHHHH
T ss_pred ccCCC------HHHHHHHHHH
Confidence 88752 5667777765
No 80
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=86.92 E-value=0.52 Score=49.71 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=37.2
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-cCCc--cccccCCc-ccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-YEAG--KFSKSKGV-GVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~~G~--KMSKS~GN-~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+-.+|.|+.+++. +=--+....|. +.|. ++.+.+|. ++|. |||||.+| .|.+.| +++.+|==+.+
T Consensus 290 ~VPvG~DQ~~hle-l~Rdia~rfn~--~~p~-~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D------~p~~I~kKI~k 358 (451)
T 3foc_A 290 LIASGIEQDPYFR-LARDLAPRMGH--PKNA-YLLGKFLPGLQGSGTKMSASDPNSAIYLTD------TPAQIKNKINR 358 (451)
T ss_dssp EEEECTTTHHHHH-HHHHHTTTTTS--CCCE-EEEECCCCBTTBTTCCCCTTCGGGSCBTTC------CHHHHHHHHHH
T ss_pred eeeeecchHHHHH-HHHHHHHHhCC--CCCe-eecCCcccCCCCCCCccCCCCCCCeeeecC------CHHHHHHHHhh
Confidence 4457999975543 22222333443 3333 44556664 7885 99999987 676543 24555554444
No 81
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=86.87 E-value=0.8 Score=46.68 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=45.9
Q ss_pred EcCCCCCCCcccchhhhhhhhHHHHHHHHHHHC-CCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006917 30 TSALPYVNNVPHLGNIIGCVLSADVFARYCRLR-GYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWF 108 (625)
Q Consensus 30 ~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~-G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 108 (625)
.++. -|+|.+||||..++ + ..+.+++ ++++.+..+ |.|..-. ..+|+ .+.++......++.+.
T Consensus 19 ~sG~-~PTG~lHLGh~vg~-l-----~~~~~lQ~~~~~~~~ia-D~hA~t~-------~~~~~-~~~~~~~~~~~~~lA~ 82 (346)
T 3n9i_A 19 FSGA-QPSGELTIGNYMGA-L-----RQWVQMQDDYDCIYCIV-DLHAITA-------RQDPA-LLRKRTLDTLALYLAC 82 (346)
T ss_dssp EEEE-CSCSCCBHHHHHHT-H-----HHHHTTTTTSEEEEEEC-HHHHTTS-------CCCHH-HHHHHHHHHHHHHHHH
T ss_pred EECc-CCCCcccHHHHHHH-H-----HHHHHHHhhCcEEEEEe-cceeecC-------CCCHH-HHHHHHHHHHHHHHHc
Confidence 3443 56699999998863 4 2222222 788766543 5554321 23443 3444555677788889
Q ss_pred Ccccc---cccCCCChhHHH
Q 006917 109 NISFD---EFGRTSTPQQTE 125 (625)
Q Consensus 109 gi~~D---~~~~t~~~~~~~ 125 (625)
|++.+ .|..+.-+.|.+
T Consensus 83 GlDp~k~~if~qS~v~~~~e 102 (346)
T 3n9i_A 83 GIDPKKSTIFVQSHVPEHSQ 102 (346)
T ss_dssp TCCTTTSEEEEGGGCTHHHH
T ss_pred CCCccceEEEeccccccchH
Confidence 99887 343333344443
No 82
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=86.67 E-value=0.55 Score=47.85 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=47.8
Q ss_pred EcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q 006917 30 TSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFN 109 (625)
Q Consensus 30 ~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lg 109 (625)
.++. -|+|.+||||..++ +. -+.+++. |+++.+..+ |.|..-. ..+++ .+.++......++.+.|
T Consensus 10 ~sG~-~PTG~lHLGhy~g~-l~--~~~~lQ~--~~~~~~~ia-D~ha~~~-------~~~~~-~~~~~~~~~~~~~lA~G 74 (341)
T 3sz3_A 10 LSGV-QPSGELSIGNYLGA-LR--QWQQMQD--DYDCQYCVV-DLHAITV-------RQDPQ-ALHEATLDALAICLAVG 74 (341)
T ss_dssp EEEE-CSSSCCBHHHHHHT-GG--GHHHHHH--HSEEEEEEC-HHHHTTS-------CCCHH-HHHHHHHHHHHHHHHTT
T ss_pred EeCc-CCCCcccHHHHHHH-HH--HHHHHHh--cCeEEEEEe-cceeEcC-------CCCHH-HHHHHHHHHHHHHHHcC
Confidence 3444 56799999998874 42 2334444 588766543 5554321 13554 44455556777888999
Q ss_pred cccc---cccCCCChhHHH
Q 006917 110 ISFD---EFGRTSTPQQTE 125 (625)
Q Consensus 110 i~~D---~~~~t~~~~~~~ 125 (625)
++++ .|..+.-++|.+
T Consensus 75 lDp~k~~i~~qS~v~~~~e 93 (341)
T 3sz3_A 75 VDPKKSTLFVQSHVPEHAQ 93 (341)
T ss_dssp CCTTTSEEEEGGGCTHHHH
T ss_pred CChhhcEEEeccchhhhHH
Confidence 9887 233333345544
No 83
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=85.84 E-value=0.93 Score=46.36 Aligned_cols=65 Identities=14% Similarity=0.029 Sum_probs=38.0
Q ss_pred EEEEeecccchhHhHHHHHhhcCCCCccCcceEEeeeeee-c-CC-ccccccC-CcccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLN-Y-EA-GKFSKSK-GVGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~~~~~~~~i~~hg~l~-~-~G-~KMSKS~-GN~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+..+|.|+...+.. =--+....+.. .| .+..+.+|. + +| +|||||. +|.|++.|= ++.+|==+.+
T Consensus 189 ~~~~G~DQ~~~i~l-~Rdia~r~~~~--~p-~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d~------p~~i~kKI~k 257 (348)
T 2j5b_A 189 ICQLGIDQRKVNML-AIEYANDRGLK--IP-ISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT------EQEVSEKISR 257 (348)
T ss_dssp EECCBGGGHHHHHH-HHHHHHHTTCC--CC-EEEEBCCCCCTTCSSCCCSTTCGGGSCBTTCC------HHHHHHHHHH
T ss_pred EEEeccChHHHHHH-HHHHHHHhCCC--Cc-eeecCccccCCCCcccccccCCCCCeEeecCC------HHHHHHHHhc
Confidence 77889999754422 11222334432 22 344556664 6 67 6999999 688977652 3445555544
No 84
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=82.87 E-value=0.41 Score=48.81 Aligned_cols=69 Identities=12% Similarity=-0.040 Sum_probs=38.2
Q ss_pred EEEEeecccchhHh---HHHHHhhcCC---CCccCcceEEe--eeee-ec-CC-ccccccC---CcccCchhhhhcCCCc
Q 006917 312 YQFMGKDNAPFHTV---MFPSTLLGTE---ENWTLMKTISV--TEYL-NY-EA-GKFSKSK---GVGVFGNDVKDTNIPA 377 (625)
Q Consensus 312 i~~~GkD~~~fH~~---~~pa~l~a~~---~~~~~~~~i~~--hg~l-~~-~G-~KMSKS~---GN~I~~~d~l~~~~g~ 377 (625)
+..+|.|+.+++.. +-+.+-...| ...+.|..++. +.++ -+ +| +|||||. +|.|++.| ++
T Consensus 146 ~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D------~p 219 (341)
T 3sz3_A 146 QVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE------DP 219 (341)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC------CH
T ss_pred EEEeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC------CH
Confidence 77889999765432 1111110112 12234444443 3344 35 67 6999999 88997754 34
Q ss_pred hhHHHHHHh
Q 006917 378 EVWRYYLIT 386 (625)
Q Consensus 378 D~lR~~ll~ 386 (625)
+.+|==+.+
T Consensus 220 ~~i~kKI~~ 228 (341)
T 3sz3_A 220 KSIIKKINK 228 (341)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 556665555
No 85
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=82.55 E-value=1.4 Score=44.80 Aligned_cols=68 Identities=10% Similarity=0.022 Sum_probs=38.5
Q ss_pred CCCCcccchhhhhhhhHHHHHHHHHHHCC-CceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccc
Q 006917 35 YVNNVPHLGNIIGCVLSADVFARYCRLRG-YNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFD 113 (625)
Q Consensus 35 y~ng~lHiGH~~~~~i~~Di~~R~~r~~G-~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~D 113 (625)
-|+|.+||||..+. + --+.+++ ..| +++.++.| |.|+.-.- + +.++. .+.++...+..++.++|++++
T Consensus 9 ~PTg~lHlGh~~g~-l--~~~~~lQ-~~G~~~~~~~Ia-D~~a~~~~----~-~~~~~-~i~~~~~~~~~~~la~Gldp~ 77 (337)
T 2el7_A 9 QPSGEIHIGNYLGA-I--KQWVAIG-EKLGRDAFFCIV-DYHALTNP----L-AYDPS-TLAQRTFEAALVNIAAGLDPE 77 (337)
T ss_dssp CSCSCCBHHHHHTH-H--HHHHHHH-HHHGGGEEEEEC-GGGGGGST----T-TSCHH-HHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCCcccHHHHHHH-H--HHHHHHH-hcCCCCEEEEEe-CceeecCC----C-CCCHH-HHHHHHHHHHHHHHHhCCChh
Confidence 45689999998864 3 2233443 447 88866544 33332110 0 12333 334444556667788999876
No 86
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=77.83 E-value=1 Score=45.92 Aligned_cols=69 Identities=9% Similarity=-0.053 Sum_probs=36.6
Q ss_pred EEEEeecccchhHh---HHHHHhhcCCCCccCcceEEe-e-eeee-c-CCc-cccccCC---cccCchhhhhcCCCchhH
Q 006917 312 YQFMGKDNAPFHTV---MFPSTLLGTEENWTLMKTISV-T-EYLN-Y-EAG-KFSKSKG---VGVFGNDVKDTNIPAEVW 380 (625)
Q Consensus 312 i~~~GkD~~~fH~~---~~pa~l~a~~~~~~~~~~i~~-h-g~l~-~-~G~-KMSKS~G---N~I~~~d~l~~~~g~D~l 380 (625)
+..+|.|+..++.. +-+.+-...|..++.|..++. | .++. + +|. |||||.+ |.|++.| +++.+
T Consensus 155 ~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D------~p~~i 228 (346)
T 3n9i_A 155 QVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE------DPKSV 228 (346)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS------CHHHH
T ss_pred EEEeccchHHHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCC------CHHHH
Confidence 77889999765432 111111111212234444443 2 2332 5 774 9999997 6887654 23555
Q ss_pred HHHHHh
Q 006917 381 RYYLIT 386 (625)
Q Consensus 381 R~~ll~ 386 (625)
|==+.+
T Consensus 229 ~kKI~k 234 (346)
T 3n9i_A 229 VKKIKR 234 (346)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 555544
No 87
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=77.62 E-value=1.2 Score=46.59 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=40.3
Q ss_pred cEEEEcCCCCCCCc-ccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcc--cchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006917 26 NILITSALPYVNNV-PHLGNIIGCVLSADVFARYCRLRGYNALYICGTDE--YGTATETKAMEENCTTQQICDKYYAIHK 102 (625)
Q Consensus 26 ~~~i~~~~Py~ng~-lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~--~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 102 (625)
++.|.++. -|+|+ +||||.. + .-.+++++ ..|+++.++.|=.+ .|+|.-...++.-.++++ +.++...++
T Consensus 30 ~~~iy~G~-dPTg~sLHlGh~v-~---l~~l~~lQ-~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~-i~~n~~~~~ 102 (419)
T 2ts1_A 30 RVTLYCGF-DPTADSLHIGHLA-T---ILTMRRFQ-QAGHRPIALVGGATGLIGDPSGKKSERTLNAKET-VEAWSARIK 102 (419)
T ss_dssp CCEEEEEE-CCSSSSCBGGGHH-H---HHHHHHHH-HTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHH-HHHHHHHHH
T ss_pred CCEEEEee-CCCCCCccHHHHH-H---HHHHHHHH-HCCCcEEEEEcCceeEecCCCCccccccCCCHHH-HHHHHHHHH
Confidence 34455555 67788 9999966 3 23455554 56999887765222 243321111222234444 344555565
Q ss_pred HHHhh
Q 006917 103 AVYNW 107 (625)
Q Consensus 103 ~~~~~ 107 (625)
+++..
T Consensus 103 ~q~~~ 107 (419)
T 2ts1_A 103 EQLGR 107 (419)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 55544
No 88
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=75.70 E-value=1.5 Score=45.31 Aligned_cols=69 Identities=12% Similarity=0.002 Sum_probs=36.3
Q ss_pred EEEEeecccchhHh---HHHHHhhcCCCCccCcceEEe--eeeee-c-CC-ccccccC---CcccCchhhhhcCCCchhH
Q 006917 312 YQFMGKDNAPFHTV---MFPSTLLGTEENWTLMKTISV--TEYLN-Y-EA-GKFSKSK---GVGVFGNDVKDTNIPAEVW 380 (625)
Q Consensus 312 i~~~GkD~~~fH~~---~~pa~l~a~~~~~~~~~~i~~--hg~l~-~-~G-~KMSKS~---GN~I~~~d~l~~~~g~D~l 380 (625)
+..+|.|+..++.. +-+.+-...|...+.|..++. +..+. + +| +|||||. ||.|++.| +++.+
T Consensus 174 ~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D------~p~~I 247 (388)
T 3prh_A 174 LVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD------EPKQL 247 (388)
T ss_dssp EECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC------CHHHH
T ss_pred EEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC------CHHHH
Confidence 78889999765422 111111111211223433332 12332 4 44 6999999 89997754 34556
Q ss_pred HHHHHh
Q 006917 381 RYYLIT 386 (625)
Q Consensus 381 R~~ll~ 386 (625)
|==+.+
T Consensus 248 ~kKI~k 253 (388)
T 3prh_A 248 EKKIKS 253 (388)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 655555
No 89
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=73.80 E-value=1.9 Score=44.15 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=26.0
Q ss_pred cEEEEcCCCCCCCc-ccchhhhhhhhHHHHHHHHHHHCCCceeeecc
Q 006917 26 NILITSALPYVNNV-PHLGNIIGCVLSADVFARYCRLRGYNALYICG 71 (625)
Q Consensus 26 ~~~i~~~~Py~ng~-lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g 71 (625)
++.|.++. -|+|+ +||||+. ++ -.+.+++ ..|++++++.|
T Consensus 46 ~~~vy~G~-~PTg~sLHLGhl~-~l---~~~~~lQ-~~G~~~~~lIa 86 (356)
T 2pid_A 46 PQTIYCGF-DPTADSLHVGHLL-AL---LGLFHLQ-RAGHNVIALVG 86 (356)
T ss_dssp CCEEEEEE-CCSSSSCBHHHHH-HH---HHHHHHH-HTTCEEEEEEC
T ss_pred CCEEEEee-cCCCCcccHHHHH-HH---HHHHHHH-HCCCcEEEEEc
Confidence 34555555 67796 9999943 43 2455554 46999877764
No 90
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=73.68 E-value=2 Score=44.58 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=26.5
Q ss_pred cEEEEcCCCCCCCc-ccchhhhhhhhHHHHHHHHHHHCCCceeeecc
Q 006917 26 NILITSALPYVNNV-PHLGNIIGCVLSADVFARYCRLRGYNALYICG 71 (625)
Q Consensus 26 ~~~i~~~~Py~ng~-lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g 71 (625)
++.|.++. -|+|+ |||||.. ++ -.+++++ ..|++++++.|
T Consensus 64 ~~~vy~G~-dPTg~sLHlGhlv-~l---~~l~~lQ-~~G~~~~~lIg 104 (392)
T 1y42_X 64 RIGAYVGI-DPTAPSLHVGHLL-PL---MPLFWMY-LEGYKAFTLIG 104 (392)
T ss_dssp CCEEEEEE-CCCSSSCBGGGHH-HH---HHHHHHH-HHTCEEEEEEC
T ss_pred CCEEEEee-cCCCCCccHHHHH-HH---HHHHHHH-HcCCcEEEEEc
Confidence 34455555 67798 9999976 33 3455555 45999877654
No 91
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=73.28 E-value=2.1 Score=43.26 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=26.4
Q ss_pred cEEEEcCCCCCCCc-ccchhhhhhhhHHHHHHHHHHHCCCceeeecc
Q 006917 26 NILITSALPYVNNV-PHLGNIIGCVLSADVFARYCRLRGYNALYICG 71 (625)
Q Consensus 26 ~~~i~~~~Py~ng~-lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g 71 (625)
++.|.++. -|+|. +||||.. + + -.+++++ ..|++++++.|
T Consensus 33 ~~~vy~G~-~PTg~slHlGh~l-~-l--~~~~~lQ-~~g~~~~~~i~ 73 (322)
T 2yxn_A 33 PIALVCGF-DPTADSLHLGHLV-P-L--LCLKRFQ-QAGHKPVALVG 73 (322)
T ss_dssp CCEEEEEE-CCSSSSCBHHHHH-H-H--HHHHHHH-HTTCEEEEEEC
T ss_pred CCEEEEee-cCCCCcccHHHHH-H-H--HHHHHHH-HcCCcEEEEEc
Confidence 34555555 67798 9999966 3 2 3455554 55999877765
No 92
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=72.17 E-value=2.2 Score=44.71 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=42.3
Q ss_pred cEEEEcCCCCCCCc-ccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcc--cchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006917 26 NILITSALPYVNNV-PHLGNIIGCVLSADVFARYCRLRGYNALYICGTDE--YGTATETKAMEENCTTQQICDKYYAIHK 102 (625)
Q Consensus 26 ~~~i~~~~Py~ng~-lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~--~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 102 (625)
++.|.++. -|+|+ +||||.. ++ -.+++++ ..|+++.++.|=.+ .|+|.-...++.-.++++ +.++...++
T Consensus 32 ~~~iy~G~-dPTg~sLHlGh~v-~l---~~~~~lQ-~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~-i~~n~~~~~ 104 (420)
T 1jil_A 32 QVTLYCGA-DPTADSLHIGHLL-PF---LTLRRFQ-EHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQ-VDKNIEGIS 104 (420)
T ss_dssp CCEEEEEE-CCSSSSCBHHHHH-HH---HHHHHHH-HTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHH-HHHHHHHHH
T ss_pred CCEEEEee-CCCCCCccHHHHH-HH---HHHHHHH-HCCCcEEEEEcCceeEecCCCccccccccCCHHH-HHHHHHHHH
Confidence 34555555 67788 9999966 32 3455554 56999887765222 243321111112234444 334555666
Q ss_pred HHHhhcCccc
Q 006917 103 AVYNWFNISF 112 (625)
Q Consensus 103 ~~~~~lgi~~ 112 (625)
+++.++ +++
T Consensus 105 ~~~~~~-ld~ 113 (420)
T 1jil_A 105 KQMHNI-FEF 113 (420)
T ss_dssp HHHHHH-SCC
T ss_pred HHHHHH-hCC
Confidence 666555 444
No 93
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=71.25 E-value=3.3 Score=42.64 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=36.0
Q ss_pred EEEEeecccchhHhHHHHHhhcCCC--CccCcceEEeeeeee-cCCccccccCC-cccCchhhhhcCCCchhHHHHHHh
Q 006917 312 YQFMGKDNAPFHTVMFPSTLLGTEE--NWTLMKTISVTEYLN-YEAGKFSKSKG-VGVFGNDVKDTNIPAEVWRYYLIT 386 (625)
Q Consensus 312 i~~~GkD~~~fH~~~~pa~l~a~~~--~~~~~~~i~~hg~l~-~~G~KMSKS~G-N~I~~~d~l~~~~g~D~lR~~ll~ 386 (625)
+--+|.|+.++... =--+....+. ..+.| ...++-++. ++|.|||||.. |.|.+.| +++.+|==+.+
T Consensus 211 ~VPVG~DQ~~hlel-tRdiA~rfn~~~~~~~P-~~~~~~~~pgldG~KmS~S~~ns~I~l~D------~p~~i~kKI~k 281 (372)
T 3a04_A 211 VVPVGADQDPHLRL-TRDLADRMAGVVELERP-ASTYHKLQPGLDGRKMSSSRPDSTIFLTD------PPEVARNKLFR 281 (372)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHTTTTSCCCCC-EEEEECCCBCTTSSBCCTTSGGGSCBTTC------CHHHHHHHHHT
T ss_pred ecccchhhHHHHHH-HHHHHHHhcCcccccCh-hhhhhcccCCCCCCccCCCCCCcccccCC------CHHHHHHHHhc
Confidence 44579999864332 1122222331 12233 344455654 79999999984 4665543 34555544444
No 94
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=71.21 E-value=2.8 Score=44.06 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=26.1
Q ss_pred cEEEEcCCCCCCCc-ccchhhhhhhhHHHHHHHHHHHCCCceeeecc
Q 006917 26 NILITSALPYVNNV-PHLGNIIGCVLSADVFARYCRLRGYNALYICG 71 (625)
Q Consensus 26 ~~~i~~~~Py~ng~-lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g 71 (625)
++.|.++. -|+|+ +||||+. + + -.+++++ ..|++++++.|
T Consensus 32 ~~~iy~G~-dPTg~sLHLGhlv-~-l--~~l~~lQ-~~G~~~i~lIg 72 (432)
T 2jan_A 32 PMTVYAGF-DPTAPSLHAGHLV-P-L--LTLRRFQ-RAGHRPIVLAG 72 (432)
T ss_dssp CCEEEEEE-CCSSSSCBGGGHH-H-H--HHHHHHH-HTTCEEEEEEC
T ss_pred CCEEEEee-CCCCCCcCHHHHH-H-H--HHHHHHH-HCCCcEEEEEc
Confidence 34555555 67795 9999944 3 3 3455555 56999888764
No 95
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=70.17 E-value=6.9 Score=43.66 Aligned_cols=68 Identities=7% Similarity=-0.036 Sum_probs=45.9
Q ss_pred CCCcccchhhhhhhhHHHHHHHHHHHC-CCceeeeccCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCccc
Q 006917 36 VNNVPHLGNIIGCVLSADVFARYCRLR-GYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISF 112 (625)
Q Consensus 36 ~ng~lHiGH~~~~~i~~Di~~R~~r~~-G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~ 112 (625)
++|.+||||+-. + --+++.|+++. |++|.++.|-++ +. .-.+.|.+ .+-+..+.....+++..+|.+.
T Consensus 390 s~g~lHLGh~v~--~-~k~l~~~~~~~~g~~v~ilIaD~~-A~----i~d~~g~~-~e~i~~~~~y~~~~~~alG~d~ 458 (690)
T 3p0j_A 390 ALLKVPLDVAEG--M-IKVTKDFIAAHPEGTVTLVLPDWS-AV----ASDEITGV-EKDISAALQVNCALLKAYGLPS 458 (690)
T ss_dssp CCSSCBHHHHHH--H-HHHHHHHHHHCSSCEEEEEECTTH-HH----HTTCTTCC-HHHHHHHHHHHHHHHHHHTCCT
T ss_pred CCCCcccchHHH--H-HHHHHHHHHHcCCCeEEEEEecch-hh----hCCCCCCC-HHHHHHHHHHHHHHHHhcCCCc
Confidence 779999999874 3 46688888775 889888776443 11 01122445 3445555677888899999863
No 96
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=59.99 E-value=13 Score=34.22 Aligned_cols=38 Identities=8% Similarity=0.128 Sum_probs=28.5
Q ss_pred ChhHHHHHHHHHHHHHHCCCEEEeeeeeeeeCCCCccc
Q 006917 120 TPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFL 157 (625)
Q Consensus 120 ~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l 157 (625)
..+|....+.++.+|.......+.....|-|+.|+-.+
T Consensus 128 E~ehe~~~~~~l~~l~~~~~~~~~~~~~~~C~~CG~~~ 165 (191)
T 1lko_A 128 EEFHEKRFLDFARNIKEGRVFLREQATKWRCRNCGYVH 165 (191)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEEEEEEEEEETTTCCEE
T ss_pred HHHHHHHHHHHHHhhhcccccccCCCceEEECCCCCEe
Confidence 45788899999998877665555666789998876544
No 97
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=40.69 E-value=9.5 Score=28.90 Aligned_cols=30 Identities=23% Similarity=0.543 Sum_probs=17.4
Q ss_pred cccccCCCCCCCccCCCccccCCCccEEEe
Q 006917 180 QCEKCGKLLNPTELKDPRCKVCQATPKIRD 209 (625)
Q Consensus 180 ~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~ 209 (625)
.|..||..++..+-...+|..||..+..+.
T Consensus 30 ~C~~CG~~~e~~~~d~irCp~CG~RILyK~ 59 (70)
T 1twf_L 30 ICAECSSKLSLSRTDAVRCKDCGHRILLKA 59 (70)
T ss_dssp ECSSSCCEECCCTTSTTCCSSSCCCCCBCC
T ss_pred ECCCCCCcceeCCCCCccCCCCCceEeEec
Confidence 455666664333333457888888765443
No 98
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=39.12 E-value=25 Score=20.32 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=17.7
Q ss_pred cchhhhhhhhHHHHHHHHHH
Q 006917 41 HLGNIIGCVLSADVFARYCR 60 (625)
Q Consensus 41 HiGH~~~~~i~~Di~~R~~r 60 (625)
|+|-++.+++..|-++++..
T Consensus 2 ~VGKiYA~llI~d~~r~~k~ 21 (23)
T 3dvk_B 2 HMGKIYAAMMIMDYYKQSKV 21 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 89999999999999998864
No 99
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=30.25 E-value=23 Score=26.11 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=20.0
Q ss_pred cccccCCCCCCCccCCCccccCCCccEEEec
Q 006917 180 QCEKCGKLLNPTELKDPRCKVCQATPKIRDT 210 (625)
Q Consensus 180 ~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~ 210 (625)
.|..||..++......-+|..||..+.+++.
T Consensus 23 ~C~~Cg~~~~l~~~~~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 23 LCADCGARNTIQAKEVIRCRECGHRVMYKMR 53 (63)
T ss_dssp BCSSSCCBCCCCSSSCCCCSSSCCCCCBCCC
T ss_pred ECCCCCCeeecCCCCceECCCCCcEEEEEec
Confidence 4666777665444445678888888875443
No 100
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=29.89 E-value=41 Score=23.08 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=18.9
Q ss_pred cccccCCCCCCCccC---CCccccCCCccEEE
Q 006917 180 QCEKCGKLLNPTELK---DPRCKVCQATPKIR 208 (625)
Q Consensus 180 ~ce~cg~~~~~~~l~---~~~~~~~g~~~~~~ 208 (625)
.|-.||+.++.+||. .-+|..||-.+..+
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyrii~K 36 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFM 36 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEEC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEEEEE
Confidence 366677777777663 34677778777643
No 101
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=27.67 E-value=24 Score=31.47 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=17.3
Q ss_pred CCccccccCCCCCCCccCCCccccCCCccE
Q 006917 177 RGDQCEKCGKLLNPTELKDPRCKVCQATPK 206 (625)
Q Consensus 177 ~g~~ce~cg~~~~~~~l~~~~~~~~g~~~~ 206 (625)
+...|..||+.++.. .....|..||+++.
T Consensus 131 ~~y~C~~Cg~~~~~~-~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 131 WRYVCIGCGRKFSTL-PPGGVCPDCGSKVK 159 (165)
T ss_dssp CCEEESSSCCEESSC-CGGGBCTTTCCBEE
T ss_pred EEEECCCCCCcccCC-CCCCcCCCCCCcce
Confidence 455677777765422 11237888888854
No 102
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=26.95 E-value=34 Score=20.97 Aligned_cols=13 Identities=46% Similarity=0.618 Sum_probs=6.9
Q ss_pred HHHHHhhcccccC
Q 006917 610 RLAEHLKKTKISV 622 (625)
Q Consensus 610 ~~~~~~~~~~~~~ 622 (625)
|+.|..+||+|.|
T Consensus 19 klkeeakkanirv 31 (36)
T 2ki0_A 19 KLKEEAKKANIRV 31 (36)
T ss_dssp HHHHHHHHHCCCC
T ss_pred HHHHHHHhccEEE
Confidence 3444455666665
No 103
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=24.52 E-value=54 Score=33.06 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHHCCCceeeecc
Q 006917 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICG 71 (625)
Q Consensus 24 ~~~~~i~~~~Py~ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g 71 (625)
+++++|+++. +| ||++- .+ .+++.++.+|++|.|++.
T Consensus 2 ~~~i~i~~GG---Tg----GHi~p-al---ala~~L~~~g~~V~~vg~ 38 (365)
T 3s2u_A 2 KGNVLIMAGG---TG----GHVFP-AL---ACAREFQARGYAVHWLGT 38 (365)
T ss_dssp -CEEEEECCS---SH----HHHHH-HH---HHHHHHHHTTCEEEEEEC
T ss_pred CCcEEEEcCC---CH----HHHHH-HH---HHHHHHHhCCCEEEEEEC
Confidence 4568887764 34 99873 34 588899999999999863
No 104
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=23.86 E-value=55 Score=23.55 Aligned_cols=25 Identities=28% Similarity=0.712 Sum_probs=14.2
Q ss_pred CCCCCccccC-----CCCCc-cccccCCCCCCC
Q 006917 165 SCPTLGCNYD-----SARGD-QCEKCGKLLNPT 191 (625)
Q Consensus 165 ~cp~~~c~~~-----~~~g~-~ce~cg~~~~~~ 191 (625)
.||. |+.. .+.|+ .|..||..+...
T Consensus 13 ~Cp~--C~~~~lv~D~~~ge~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 13 TCPN--HPDAILVEDYRAGDMICPECGLVVGDR 43 (58)
T ss_dssp SBTT--BSSSCCEECSSSCCEECTTTCCEECCS
T ss_pred cCcC--CCCCceeEeCCCCeEEeCCCCCEEecc
Confidence 5777 7542 23343 477787766443
No 105
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.24 E-value=64 Score=26.91 Aligned_cols=76 Identities=9% Similarity=0.145 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhhcCcc-cc---cccCCCChhHHHHHHHHHHHHHHCC-CEE------EeeeeeeeeCCCCccccccc
Q 006917 93 ICDKYYAIHKAVYNWFNIS-FD---EFGRTSTPQQTEICQAIFKKLLENN-WLS------EYTTQQLYCDTCKRFLADRL 161 (625)
Q Consensus 93 ~~~~~~~~~~~~~~~lgi~-~D---~~~~t~~~~~~~~v~~~~~~L~~~G-~iy------~~~~~~~y~~~~~~~l~~~~ 161 (625)
++....+.+.+..+.=|.. .. .-+-..+--+....+..|..+.+.- ... +..-..|+|..|+.-..-..
T Consensus 8 i~~~i~~~~~~~A~~~g~~~V~~V~l~IG~ls~v~~e~l~f~f~~~~~gt~~~e~a~L~i~~~p~~~~C~~CG~~~e~~~ 87 (119)
T 2kdx_A 8 VVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKDAILDIVDEKVELECKDCSHVFKPNA 87 (119)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCEEEEEEETTSCCCHHHHHHHHHHHGGGCTTTSSCCEEEEEECCEEECSSSSCEECSCC
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEEEeehhccccHHHHHHHHHHHHhCChhhcCcEEEEEeccceEEcCCCCCEEeCCC
Confidence 4455555555555554431 11 1122333456677777777664433 222 34445788888775543222
Q ss_pred ccc-CCCC
Q 006917 162 VEG-SCPT 168 (625)
Q Consensus 162 v~g-~cp~ 168 (625)
... .||.
T Consensus 88 ~~~~~CP~ 95 (119)
T 2kdx_A 88 LDYGVCEK 95 (119)
T ss_dssp STTCCCSS
T ss_pred CCCCcCcc
Confidence 223 5555
No 106
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.19 E-value=28 Score=31.29 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=0.0
Q ss_pred cccccCCCCCCCccCCCccccCCCc
Q 006917 180 QCEKCGKLLNPTELKDPRCKVCQAT 204 (625)
Q Consensus 180 ~ce~cg~~~~~~~l~~~~~~~~g~~ 204 (625)
.|..||..++ .++.+ .|+.||.+
T Consensus 140 ~C~~CG~i~~-~~~p~-~CP~Cg~~ 162 (170)
T 3pwf_A 140 ICPICGYTAV-DEAPE-YCPVCGAP 162 (170)
T ss_dssp ECTTTCCEEE-SCCCS-BCTTTCCB
T ss_pred EeCCCCCeeC-CCCCC-CCCCCCCC
No 107
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=20.14 E-value=79 Score=31.40 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=36.2
Q ss_pred CCCCcEEEEcCCCC---C--CCcccchhhhhhhhHHHHHHHHHHHCCCceeeeccCcc
Q 006917 22 PGKRNILITSALPY---V--NNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDE 74 (625)
Q Consensus 22 ~~~~~~~i~~~~Py---~--ng~lHiGH~~~~~i~~Di~~R~~r~~G~~V~~~~g~D~ 74 (625)
.|++.++||+++ | . +..=-|++-.+--. +-.+|++...+|++|.++.|-..
T Consensus 35 ~gk~~VLITaGg-T~EpID~DpVRfItN~SSGkm-G~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 35 QGRRVVLVTSGG-TKVPLEARPVRFLDNFSSGRR-GATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp TTCCEEEEEESB-CEEESSSSCSEEEEECCCCHH-HHHHHHHHHHTTCEEEEEEETTS
T ss_pred cCCeEEEEeCCC-cccccCCCceeEecCCCCcHH-HHHHHHHHHHCCCEEEEEecCCC
Confidence 354448888876 4 1 23345666665444 88899999999999999998554
Done!