RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 006917
(625 letters)
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 1269 bits (3286), Expect = 0.0
Identities = 498/614 (81%), Positives = 555/614 (90%), Gaps = 2/614 (0%)
Query: 9 DGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALY 68
+ KLP+PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNA+Y
Sbjct: 1 MEDEGKSPPKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIY 60
Query: 69 ICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQ 128
ICGTDEYGTATETKA+EENCT ++ICDKY+AIHK VY+WF+ISFD+FGRTSTPQQTEICQ
Sbjct: 61 ICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQ 120
Query: 129 AIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLL 188
AIFKKL+ENNWLSE T QQLYCDTC++FLADRLVEG+CPT GCNYDSARGDQCEKCGKLL
Sbjct: 121 AIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLL 180
Query: 189 NPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAW 248
NPTEL DP+CKVC+ TP+IRDTDHLFLELPL+KDKL EYIN+ SV+G WSQNAIQ T AW
Sbjct: 181 NPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAW 240
Query: 249 LKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPEN 308
L+DGLKPRCITRDLKWGVPVP EK+KDKVFYVWFDAPIGY+SIT+CYTP+WE+WWKNPEN
Sbjct: 241 LRDGLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPEN 300
Query: 309 VALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGN 368
V LYQFMGKDN PFHTVMFPSTLLGT ENWT+MKTISVTEYLNYE GKFSKSKGVGVFGN
Sbjct: 301 VELYQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGN 360
Query: 369 DVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPP 428
D KDTNIP EVWRYYL+TNRPEVSDTLFTW D QAKLN+ELLNNLGNF+NRVLSFIAKPP
Sbjct: 361 DAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPP 420
Query: 429 GRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAY 488
G GYGS+IPD+P A+ HP TK LAEK+ ++QY+EAMEKVKLKQGL+ MSISSEGNAY
Sbjct: 421 GAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAY 480
Query: 489 LQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSL 548
LQESQFWKLY ED+ SC+IV++TSVGLVYLLACLLEPFMPSFS EVLKQLN+P E+ SL
Sbjct: 481 LQESQFWKLYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPES-LSL 539
Query: 549 SDENGDLERARKPWEILPAGHRIGMSSPLFKELKDEDVRFFREKFAGSQADRAVQAEAEA 608
SDE G++ RA++PWE++PAGH+IG PLFKELKDE+V +REKFAGSQADRA +AEA
Sbjct: 540 SDEKGEVARAKRPWELVPAGHKIGTPEPLFKELKDEEVEAYREKFAGSQADRAARAEAAE 599
Query: 609 -KRLAEHLKKTKIS 621
K+LA+ LKK +S
Sbjct: 600 AKKLAKQLKKKALS 613
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 664 bits (1716), Expect = 0.0
Identities = 248/581 (42%), Positives = 335/581 (57%), Gaps = 37/581 (6%)
Query: 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKA 83
ILITSA PY N HLG++ G L ADVFARY RL+G L++ G+DE+GT E A
Sbjct: 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAA 61
Query: 84 MEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEY 143
+E T Q++ DKY+ HK + IS+D F RT++P E+ Q F KL EN ++ +
Sbjct: 62 KKEGVTPQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKK 121
Query: 144 TTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQA 203
T +Q YC + RFL DR VEG+CP C Y+ ARGDQC+ CG LL+PT+L +PR K+ +
Sbjct: 122 TIEQAYCPSDGRFLPDRYVEGTCPY--CGYEGARGDQCDNCGALLDPTDLINPRSKISGS 179
Query: 204 TPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLK 263
TP+ R+T+H FL+LP ++L +I SG W N + T WLK+GLKPR ITRDL
Sbjct: 180 TPEFRETEHFFLDLPAFAERLRAWIES---SGDWPPNVLNFTLNWLKEGLKPRAITRDLD 236
Query: 264 WGVPVPHEKFKDKVFYVWFDAPIGYISIT-----SCYTP-DWEEWWKNPENVALYQFMGK 317
WG+PVP F+ KVFYVWFDA IGYIS + P W+E+W +PE Y F+GK
Sbjct: 237 WGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPE-TKSYYFIGK 295
Query: 318 DNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPA 377
DN PFH++++P+ LLG+ E L I +EYL E GKFSKS+G G++ +D + P
Sbjct: 296 DNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALER-YPP 354
Query: 378 EVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIP 437
+ RYYL N PE SDT FTWE+F ++N+EL + GN VNRVLSFI K +G I+P
Sbjct: 355 DYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEK----YFGGIVP 410
Query: 438 DSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKL 497
D AE + + E +E + K+ L M ++ E N YL E WKL
Sbjct: 411 PGELGDEDRELIAEAEALF---KEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKL 467
Query: 498 YNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLER 557
D+ + V+ T++ LV LLA LL PF+P + ++ + L K +
Sbjct: 468 AKTDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIEKLT---------- 517
Query: 558 ARKPWE---ILPAGHRIGMSSPLFKELKDEDVRFFREKFAG 595
WE L GH I PLFK++ DE + E+ G
Sbjct: 518 ----WESLKPLLPGHPINKPEPLFKKIDDEQIEEELERLGG 554
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 617 bits (1594), Expect = 0.0
Identities = 198/605 (32%), Positives = 304/605 (50%), Gaps = 48/605 (7%)
Query: 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKA 83
R IL+T ALPY N HLG+++ + AD++ RY R+RG+ L++C D +GT KA
Sbjct: 1 MRKILVTCALPYANGPIHLGHLVE-YIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKA 59
Query: 84 MEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEY 143
+E T +++ +Y+A HK + F ISFD +G T + + E+ Q I+ KL EN ++ E
Sbjct: 60 EKEGITPEELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEK 119
Query: 144 TTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQA 203
T +QLY FL DR V+G+CP C + GD CE CG +PTEL +P+ + A
Sbjct: 120 TIEQLYDPEKGMFLPDRFVKGTCPK--CGAEDQYGDNCEVCGATYSPTELINPKSAISGA 177
Query: 204 TPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLK 263
TP +++++H F +LP ++ L+E+I + SG N WL++GL+ I+RD
Sbjct: 178 TPVLKESEHFFFKLPRFEEFLKEWITR---SGELQPNVANKMKEWLEEGLQDWDISRDAP 234
Query: 264 W-GVPVPHEKFKDKVFYVWFDAPIGYISITSCYTP-----DWEEWWKNPENVALYQFMGK 317
+ G +P KVFYVW DAPIGYIS T DW+E+WK + LY F+GK
Sbjct: 235 YFGFEIPGA--PGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGK 292
Query: 318 DNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPA 377
D FHT+ +P+ L G + L + +L E K SKS+G ++ D ++
Sbjct: 293 DIIYFHTLFWPAMLEGA--GYRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLD-HLDP 349
Query: 378 EVWRYYLITNRPE-VSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSII 436
+ RYYL PE + D F WEDFQ ++N+EL+ + NF +R FI K + +
Sbjct: 350 DYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINK----RFDGKL 405
Query: 437 PDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWK 496
PD+ + L E+ ++ EA E + ++ LR M+++ N Y+ +++ WK
Sbjct: 406 PDA------LADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWK 459
Query: 497 LYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLE 556
L +D V + L LA L+P +P + LN+ T
Sbjct: 460 LAKQDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLEELT------------ 507
Query: 557 RARKPWEI---LPAGHRIGMSSPLFKELKDEDVRFFREKFAGSQADRAVQAEAEAKRLAE 613
W+ AGH I LF ++D+ + E + A +A A A A E
Sbjct: 508 -----WDDAQQPLAGHPINKFKILFTRIEDKQIEALIEASKEAAAAKAAAAAAAAPLAEE 562
Query: 614 HLKKT 618
+ +T
Sbjct: 563 PIAET 567
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 610 bits (1575), Expect = 0.0
Identities = 215/579 (37%), Positives = 307/579 (53%), Gaps = 31/579 (5%)
Query: 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKA 83
+ IL+T+ALPY N PHLG++ L+ADV+ARY RLRGY ++ GTDE+GT E KA
Sbjct: 4 MKKILVTTALPYPNGPPHLGHLYT-YLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKA 62
Query: 84 MEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEY 143
+E T Q++ DK + K ++ NISFD F RT++P+ E+ Q F KL EN +
Sbjct: 63 EKEGITPQELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLR 122
Query: 144 TTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQA 203
+ LYC +C+RFL DR VEG+CP C + ARGDQCE CG+ L+PTEL +P C + A
Sbjct: 123 EYEGLYCVSCERFLPDRYVEGTCP--KCGGEDARGDQCENCGRTLDPTELINPVCVISGA 180
Query: 204 TPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITR-DL 262
TP++R+ +H F L +DKL E+ + W N +LK+GLK ITR DL
Sbjct: 181 TPEVREEEHYFFRLSKFQDKLLEWYES-NPDFIWPANRRNEVLNFLKEGLKDLSITRTDL 239
Query: 263 KWGVPVPHEKFKDKVFYVWFDAPIGYISITSCY-----TPDWEEWWKNPENVALYQFMGK 317
WG+PVP KV YVWFDA IGYIS D++++W + L F+GK
Sbjct: 240 DWGIPVP--GDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADD-TELVHFIGK 296
Query: 318 DNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPA 377
D FH V +P+ L+ L I +L E K SKS+G V +++ +
Sbjct: 297 DIIRFHAVYWPAMLMAAGLP--LPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQ-YGV 353
Query: 378 EVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIP 437
+ RYYL PE SD F+WEDF ++N +L N LGN NR L FI K + ++P
Sbjct: 354 DALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKY----FDGVVP 409
Query: 438 DSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKL 497
A + L ++ EAMEK + ++ L M+++S N Y+ E WKL
Sbjct: 410 A-AGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKL 468
Query: 498 YNEDQGS-CSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLE 556
ED+ + V+ ++ LV +LA LL PFMP + ++ QL + + +
Sbjct: 469 AKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWLGA---- 524
Query: 557 RARKPWEILPAGHRIGMSSPLFKELKDEDVRFFREKFAG 595
+ L GH++G PLF +++E + E
Sbjct: 525 -----RQPLLPGHKLGPPEPLFPRIEEEAIEELIEALKE 558
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 563 bits (1454), Expect = 0.0
Identities = 231/541 (42%), Positives = 314/541 (58%), Gaps = 20/541 (3%)
Query: 27 ILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE 86
ILIT+ALPY N PHLG+ + ADV+ARY RLRGY L++CGTDE+GT E KA +E
Sbjct: 1 ILITTALPYANGKPHLGHAY-TTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE 59
Query: 87 NCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQ 146
T +++ DKY+ K + W NISFD F RT+ + EI Q IF+KL EN ++ E +
Sbjct: 60 GLTPKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIK 119
Query: 147 QLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPK 206
QLYC C+ FL DR VEG+CP C + ARGD CE CG+ L PTEL +PRCK+C A P+
Sbjct: 120 QLYCPECEMFLPDRYVEGTCPK--CGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPE 177
Query: 207 IRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLK-WG 265
+RD++H F L + +LEE+I K SGS + N WLK GLK ITRDL WG
Sbjct: 178 LRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWG 237
Query: 266 VPVPHEKFKDKVFYVWFDAPIGYIS---ITSCYTPDWEEWWKNPENVALYQFMGKDNAPF 322
+PVP++ +KV YVWFDA IGYIS I S T DW++WW N E+ L F+GKD F
Sbjct: 238 IPVPND--PNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRF 295
Query: 323 HTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRY 382
HT+ +P+ L+G L + YL E GK SKS G V +D+ A++ RY
Sbjct: 296 HTIYWPAMLMGLG--LPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLA-RFGADILRY 352
Query: 383 YLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKA 442
YL+ RP D F+WEDF ++N +L N LGN +NR L FI K + ++P
Sbjct: 353 YLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKY----FNGVLPSEDIT 408
Query: 443 DLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQ 502
D K L + I+ ++Q EA+E + ++ LR M ++ GN Y+ E++ W+L+
Sbjct: 409 D--EEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFK-QS 465
Query: 503 GSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLS-DENGDLERARKP 561
++ L+ +L+ LL P MP S ++LK LN E F L E L +A
Sbjct: 466 PRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFELEWDFKLKLLEGHKLNKAEPL 525
Query: 562 W 562
+
Sbjct: 526 F 526
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 528 bits (1362), Expect = 0.0
Identities = 168/398 (42%), Positives = 237/398 (59%), Gaps = 13/398 (3%)
Query: 27 ILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE 86
LIT+ALPYVN PH+G++ + ADV+ARY RLRGY+ L++ GTDE+GT E A +E
Sbjct: 1 FLITTALPYVNGPPHIGHLYT-TIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKE 59
Query: 87 NCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQ 146
T Q++ D+Y+ K ++ FNISFD+F RT++ + E+ Q F KL E + E +
Sbjct: 60 GVTPQELVDRYHEEFKELFKKFNISFDDFIRTTSERHKELVQEFFLKLYEKGDIYEGEYE 119
Query: 147 QLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPK 206
YC + +RFL DR VEG+CP C + ARGDQCE CG+ L PTEL +PR + +TP+
Sbjct: 120 GWYCVSDERFLPDRYVEGTCPY--CGSEDARGDQCEVCGRPLEPTELINPRSAISGSTPE 177
Query: 207 IRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGV 266
+++ +H F L +DKL E+I + N + +WLK+GLK ITRDL WG+
Sbjct: 178 LKEEEHYFFRLSKFQDKLLEWIKE--NPDEPPSNVNEVVLSWLKEGLKDLSITRDLDWGI 235
Query: 267 PVPHEKFKDKVFYVWFDAPIGYISITSCYTPD---WEEWWKNPENVALYQFMGKDNAPFH 323
PVP KV YVWFDA IGYIS T + + W+++W + + + F+GKD FH
Sbjct: 236 PVP--GDPGKVIYVWFDALIGYISATKYLSGNPEKWKKFWADDPDTEIVHFIGKDIIRFH 293
Query: 324 TVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYY 383
+ +P+ L+ L + +L E GK SKS+G V +++ D + RYY
Sbjct: 294 AIYWPAMLMA--AGLPLPTQVFAHGWLTVEGGKMSKSRGNVVDPDELLDR-YGVDALRYY 350
Query: 384 LITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVL 421
L PE D F+WEDF ++N+EL N+LGN VNR L
Sbjct: 351 LAREAPEGKDGDFSWEDFVERVNSELANDLGNLVNRTL 388
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 436 bits (1125), Expect = e-150
Identities = 155/373 (41%), Positives = 200/373 (53%), Gaps = 56/373 (15%)
Query: 26 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAME 85
+LIT+ALPYVN VPHLG++ G VL ADVFARY RLRGY+ L++ GTDE+GT E KA E
Sbjct: 1 KVLITTALPYVNGVPHLGHLYGTVL-ADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE 59
Query: 86 ENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTT 145
E T Q++CDKY+ I K ++ W NISFD F RT++P+ EI Q FKKL EN ++ E
Sbjct: 60 EGVTPQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEY 119
Query: 146 QQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATP 205
+ LYC +C+RFL P
Sbjct: 120 EGLYCVSCERFL-----------------------------------------------P 132
Query: 206 KIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDL-KW 264
+ R+ +H F L +D+L E++ K + W +NA +WLK+GLK ITRDL W
Sbjct: 133 EWREEEHYFFRLSKFQDRLLEWLEK-NPDFIWPENARNEVLSWLKEGLKDLSITRDLFDW 191
Query: 265 GVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEE-WWKNPENVALYQFMGKDNAPFH 323
G+PVP KV YVWFDA IGYIS T Y +W WW L F+GKD FH
Sbjct: 192 GIPVPL--DPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFH 249
Query: 324 TVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYY 383
+ +P+ LLG L I YL E K SKS+G V +D+ + A+ RYY
Sbjct: 250 AIYWPAMLLGA--GLPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLER-YGADALRYY 306
Query: 384 LITNRPEVSDTLF 396
L+ RPE D+ F
Sbjct: 307 LLRERPEGKDSDF 319
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 292 bits (749), Expect = 1e-91
Identities = 161/579 (27%), Positives = 252/579 (43%), Gaps = 87/579 (15%)
Query: 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAM 84
+ IT+ + Y N PH+G+ L+ADV AR+ RLRGY+ ++ GTDE+G + KA
Sbjct: 1 KKFYITTPIYYPNGKPHIGHA-YTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAE 59
Query: 85 EENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENN--WLSE 142
E + Q++ D+ A K ++ NIS+D+F RT+ P+ E Q IF++LL N +L +
Sbjct: 60 EAGISPQELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGK 119
Query: 143 YTTQQLYCDTCKRFLADR-LVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVC 201
Y YC C+ F + L+E RC
Sbjct: 120 YEG--WYCVRCEEFYTESELIED------------------------------GYRCPPT 147
Query: 202 QATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYA------WLKDGLKP 255
A + + + F L +DKL E + IQ ++K GLK
Sbjct: 148 GAPVEWVEEESYFFRLSKYQDKLLELYEAN-------PDFIQPASRRNEVISFVKSGLKD 200
Query: 256 RCITR-DLKWGVPVPHEKFKDK-VFYVWFDAPIGYISITSC------YTPDWEEWWKNPE 307
I+R + WG+PVP K V YVWFDA Y++ + ++W P
Sbjct: 201 LSISRTNFDWGIPVP---GDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYW--PA 255
Query: 308 NVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFG 367
+V +GKD FH V +P+ L+ L K + +L + K SKS G +
Sbjct: 256 DV---HLIGKDILRFHAVYWPAFLMAAGLP--LPKRVFAHGFLTLDGEKMSKSLGNVI-- 308
Query: 368 NDVKD--TNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIA 425
D D + RY+L+ P D F+ E F ++N +L N+LGN R LS IA
Sbjct: 309 -DPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIA 367
Query: 426 KPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEG 485
K + +P+ L + + L E + +++ AM+ + + L +++
Sbjct: 368 K----NFDGKVPE--PGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAA 421
Query: 486 NAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETK 545
N Y+ E W L D + V+ T + ++ +A LL+P MP + ++L QL V
Sbjct: 422 NKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVE---- 477
Query: 546 FSLSDENGDLERARKPWEILPAGHRIGMSSPLFKELKDE 584
DEN D W L G + P+F L++E
Sbjct: 478 ---EDENRDFAALS--WGRLAPGTTLPKPEPIFPRLEEE 511
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 254 bits (651), Expect = 8e-76
Identities = 170/636 (26%), Positives = 276/636 (43%), Gaps = 120/636 (18%)
Query: 24 KRNILITSALPYVNNVPHLGN----IIGCVLSADVFARYCRLRGYNALYICGTDEYGTAT 79
K+ IT+ + Y N PH+G+ I AD ARY RL+GY+ ++ GTDE+G
Sbjct: 3 KKTFYITTPIYYPNGKPHIGHAYTTIA-----ADALARYKRLQGYDVFFLTGTDEHGQKI 57
Query: 80 ETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENN- 138
+ A + T Q+ D+ A K ++ +IS+D+F RT+ + ++ Q IF+KL E
Sbjct: 58 QQAAEKAGKTPQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGD 117
Query: 139 -WLSEYTTQQLYCDTCKRFLADR-LVE-GSCPTLGCNYDSARGDQCEKCGKLLNPTELKD 195
+ EY YC +C+ F + LV+ G CP CG+ EL
Sbjct: 118 IYKGEYEG--WYCVSCETFFTESQLVDGGKCPD---------------CGR---EVEL-- 155
Query: 196 PRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQG-------TYAW 248
+++ + F + +D+L EY + + + IQ +
Sbjct: 156 -----------VKEESY-FFRMSKYQDRLLEYYEE-------NPDFIQPESRKNEMINNF 196
Query: 249 LKDGLKPRCITRD-LKWGVPVPHEKFKDK-VFYVWFDAPIGYIS---ITSCYTPDWEEWW 303
+K GL+ I+R WG+PVP F K V YVW DA + YI+ S ++++W
Sbjct: 197 IKPGLEDLSISRTSFDWGIPVP---FDPKHVVYVWIDALLNYITALGYGSDDDELFKKFW 253
Query: 304 KNPENVALYQFMGKDNAPFHTVMFPSTL--LGTEENWTLMKTISVTEYLNYEAGKFSKSK 361
P +V +GKD FH + +P L LG L K + + + GK SKSK
Sbjct: 254 --PADV---HLVGKDILRFHAIYWPIMLMALGLP----LPKKVFAHGWWLMKDGKMSKSK 304
Query: 362 G--------VGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNL 413
G V +G D RYYL+ P SD F+ E ++N++L N+L
Sbjct: 305 GNVVDPEELVDRYGLDA---------LRYYLLREVPFGSDGDFSPEALVERINSDLANDL 355
Query: 414 GNFVNRVLSFIAKPPGRGY-GSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLK 472
GN +NR ++ I K Y IP ++ + L + Y E ME+++
Sbjct: 356 GNLLNRTVAMINK-----YFDGEIP--APGNVTEFDEELIALAEETLKNYEELMEELQFS 408
Query: 473 QGLRIGMSISSEGNAYLQESQFWKLYNE--DQGSCSIVIRTSVGLVYLLACLLEPFMPSF 530
+ L + S N Y+ E+ W L + + + V+ + +A LL PFMP
Sbjct: 409 RALEEVWKLISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPET 468
Query: 531 SLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPLFKEL-KDEDVRFF 589
S ++ +QL + E S W LPAG ++ PLF + +E++ +
Sbjct: 469 SKKIFEQLGLEEELTSWESL---------LEWGGLPAGTKVAKGEPLFPRIDVEEEIAYI 519
Query: 590 REKFAGSQADRAVQAEAEAKRLA---EHLKKTKISV 622
+E+ GS + E + ++ + K ++ V
Sbjct: 520 KEQMEGSAPKEPEEKEKKPEKPEITIDDFDKVELRV 555
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 155 bits (393), Expect = 3e-40
Identities = 147/578 (25%), Positives = 250/578 (43%), Gaps = 80/578 (13%)
Query: 28 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEEN 87
++T+ L YVN PH+G+ ++AD AR+ RL G ++I GTDE+G T A
Sbjct: 72 VLTTPLYYVNAPPHMGSAY-TTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANG 130
Query: 88 CTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQ 147
+ CD ++ ++ +I++D+F RT+ P+ I + + ++ N + +
Sbjct: 131 RNPPEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEG 190
Query: 148 LYCDTCKRFLADR-LVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPK 206
LYC C+ + ++ L+E +C C V Q
Sbjct: 191 LYCVNCEEYKDEKELLENNC-------------------------------CPVHQMPCV 219
Query: 207 IRDTDHLFLELPLIKDKLEEYI--NKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDL-K 263
R D+ F L + LE+ + N V S+ N +Q +W+K GL+ I+R L
Sbjct: 220 ARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQ---SWIKSGLRDFSISRALVD 276
Query: 264 WGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENV------ALYQFMGK 317
WG+PVP + + YVWFDA +GYIS T D ++ +N E A +GK
Sbjct: 277 WGIPVPDDD--KQTIYVWFDALLGYIS---ALTEDNKQ--QNLETAVSFGWPASLHLIGK 329
Query: 318 DNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPA 377
D FH V +P+ L+ L K + +L + K KS G + ++ P
Sbjct: 330 DILRFHAVYWPAMLMSA--GLELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQKFGPD 387
Query: 378 EVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIP 437
V RY+ + +D ++ + F +N L N +GN +NR L + K +++
Sbjct: 388 AV-RYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKK---NCESTLVE 443
Query: 438 DSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKL 497
DS A K EK+ +++ E + L + I + GN Y+ + W L
Sbjct: 444 DSTVAAEGVPLKDTVEKL---VEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWFL 500
Query: 498 YNE-----DQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDEN 552
+ + ++ + +VI V + ++A L P P SL + QL +E +F+
Sbjct: 501 FKQGGVSAEEAAKDLVIILEV--MRVIAVALSPIAPCLSLRIYSQLGY-SEDQFN----- 552
Query: 553 GDLERARKPWEILPAGHRIGMSSPLFKEL-----KDED 585
+ + W L G + +SP+F + K+ED
Sbjct: 553 -SITWSDTKWGGLKGGQVMEQASPVFARIELNPEKEED 589
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl
tRNA synthetases. This domain is found in methionyl
tRNA synthetases (MetRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon (CAU). MetRS catalyzes the
transfer of methionine to the 3'-end of its tRNA.
Length = 129
Score = 132 bits (334), Expect = 2e-36
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 7/135 (5%)
Query: 405 LNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIE 464
+N+EL NNLGN VNR L+ +K +G ++P L + L E+ +++ E
Sbjct: 1 INSELANNLGNLVNRTLNMASKY----FGGVVP--EFGGLTEEDEELLEEAEELLEEVAE 54
Query: 465 AMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLY-NEDQGSCSIVIRTSVGLVYLLACLL 523
AME+++ ++ L M ++ N Y+ E+ WKL ED + V+ + L+ +LA LL
Sbjct: 55 AMEELEFRKALEEIMELARAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAILL 114
Query: 524 EPFMPSFSLEVLKQL 538
PFMP + ++L QL
Sbjct: 115 SPFMPETAEKILDQL 129
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 84.8 bits (210), Expect = 5e-18
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 21/194 (10%)
Query: 207 IRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGV 266
+R T+ F ++P K+KL + + + + +N + AWL+ L I+R WG
Sbjct: 136 VRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRM---EAWLESLLD-WAISRQRYWGT 191
Query: 267 PVPHEKFKDKVFYVWFDAPIGYISITS--CYTPDWEEWWKNPENVALYQFMGKDNAPFHT 324
P+P + VF VWFD+ IG + +++ + A + +GKD
Sbjct: 192 PLP-----EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYP-----ADWHLIGKDILRGWA 241
Query: 325 VMFPSTLLGTE-ENWTLMKTISVTEYLNYEAG-KFSKSKGVGVFGNDVKDTNIPAEVWRY 382
+ + L+ E K + V ++ E G K SKSKG + +DV + A+ RY
Sbjct: 242 NFWITMLVALFGEIP--PKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKY-GADALRY 298
Query: 383 YLITNRPEVSDTLF 396
YL + P D
Sbjct: 299 YLTSLAPYGDDIRL 312
Score = 73.2 bits (180), Expect = 4e-14
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 27 ILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKA--- 83
+T+ PY N HLG+ + ++ AD ARY R+RGY ++ G D +G E KA
Sbjct: 2 FYVTTPPPYANGSLHLGHALTHII-ADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60
Query: 84 ----------MEENCTTQQICDKYYAIHKAVYNWFNISFD--EFGRTSTPQQTEICQAIF 131
E ++ ++ HK + IS+D + T+ P+ ++ + IF
Sbjct: 61 GGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120
Query: 132 KKLLEN 137
+L E
Sbjct: 121 SRLYEK 126
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 54.2 bits (131), Expect = 1e-07
Identities = 51/288 (17%), Positives = 91/288 (31%), Gaps = 94/288 (32%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETK----AMEENCT 89
P V H+G+ + + D+ ARY R++GYN L+ GTD G AT+ E T
Sbjct: 10 PNVTGSLHMGHALNNTI-QDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKT 68
Query: 90 ------------TQQICDKYYAIHKAVYNWFN-----ISFDEFGRTSTPQQTEICQAIFK 132
+ ++ + + + T P + Q F
Sbjct: 69 RHDLGREEFLEKCWEWKEES---GGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFV 125
Query: 133 KLLEN----------NWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCE 182
+L E NW C + ++D V C
Sbjct: 126 RLYEKGLIYRDNRLVNW----------CPKLRTAISDIEV------------------CS 157
Query: 183 KCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAI 242
+ G E P + F+++ + K E + + + + +
Sbjct: 158 RSGD---VIE------------PLL--KPQWFVKVKDLAKKALEAVKEGDI--KFVPERM 198
Query: 243 QGTY-AWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYI 289
+ Y WL++ ++ CI+R L WG +P W+ G+
Sbjct: 199 EKRYENWLEN-IRDWCISRQLWWGHRIP----------AWYCKDGGHW 235
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 52.3 bits (126), Expect = 7e-07
Identities = 46/217 (21%), Positives = 72/217 (33%), Gaps = 43/217 (19%)
Query: 17 AKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYG 76
A + PY + H+G++ + DV ARY R++GYN L+ G D +G
Sbjct: 26 ADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTI-GDVIARYKRMQGYNVLHPMGWDAFG 84
Query: 77 TATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFD---EFGRTSTPQQTEICQAIFKK 133
E A++ + A K S D EF T P+ + Q F K
Sbjct: 85 LPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDWRREF-ATCDPEYYKWIQWQFLK 143
Query: 134 LLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTEL 193
L E + V N+ C G +L ++
Sbjct: 144 LYEKGLAYR---------------KEAPV---------NW-------CPVDGTVLANEQV 172
Query: 194 KDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINK 230
D C C +I+ EL K+ +Y ++
Sbjct: 173 IDGGCWRCGEPVEIK-------ELTQWFFKITDYADE 202
Score = 29.2 bits (66), Expect = 9.6
Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 21/155 (13%)
Query: 316 GKDNAP--------FHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFG 367
G ++A FH +F L+ +E + K I+ L E K SKSKG V
Sbjct: 533 GIEHAVLHLLYFRFFHKALFDEGLVPKDEPFK--KLITQGMVLGEEGEKMSKSKGNVVDP 590
Query: 368 NDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKP 427
+ + A+ R Y++ P D W + + F+ RV + + +
Sbjct: 591 EEAVEKY-GADTVRLYIMFAAPPEQD--LEW-------SESGVEGARRFLQRVWNLVKEH 640
Query: 428 PGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQY 462
+ + + K D + + K++ +
Sbjct: 641 LEKLVEELTKEQGKEDRWLLHRTIK-KVTEDFEAR 674
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 49.4 bits (118), Expect = 6e-06
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Query: 22 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATET 81
K I S PY + H+G++ ++ DV +RY R++GYN L+ G D +G E
Sbjct: 26 SSKPKYYILSMFPYPSGALHMGHVRNYTIT-DVLSRYYRMKGYNVLHPIGWDAFGLPAEN 84
Query: 82 KAMEENCTTQQICDKYYAIHKAVYNWFNISFD---EFGRTSTPQQTEICQAIFKKLLENN 138
A++ + + A K S+D E T P+ + Q IF +L E
Sbjct: 85 AAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREI-ATCDPEYYKWTQWIFLELFEKG 143
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 47.6 bits (114), Expect = 8e-06
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 29 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENC 88
I PY + H+G++ + D+ ARY R++GYN L+ G D +G E A++
Sbjct: 4 ILVMFPYPSGALHVGHVRTYTI-GDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGR 62
Query: 89 TTQQICDKYYAIHKAVYNWFNISFD---EFGRTSTPQQTEICQAIFKKLLENN 138
+ + K S+D EF T P+ + Q +F KL E
Sbjct: 63 DPEDWTEYNIKKMKEQLKRMGFSYDWRREF-TTCDPEYYKFTQWLFLKLYEKG 114
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 47.6 bits (114), Expect = 2e-05
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETK 82
P V H+G+ + L D+ ARY R+RGYN L+ GTD G AT+
Sbjct: 42 PNVTGSLHMGHALNYTL-QDILARYKRMRGYNVLWPPGTDHAGIATQVV 89
Score = 31.8 bits (73), Expect = 1.2
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 246 YAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYI 289
W+++ ++ CI+R L WG +P VW+ G +
Sbjct: 390 EDWMEN-IRDWCISRQLWWGHRIP----------VWYCKECGNV 422
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA
synthetase (ValS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the isoleucyl
tRNA synthetase [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 46.2 bits (110), Expect = 4e-05
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETK 82
P V H+G+ + + D+ ARY R++GYN L++ GTD G AT+ K
Sbjct: 42 PNVTGSLHIGHALNWSIQ-DIIARYKRMKGYNVLWLPGTDHAGIATQVK 89
Score = 32.0 bits (73), Expect = 1.3
Identities = 77/379 (20%), Positives = 128/379 (33%), Gaps = 100/379 (26%)
Query: 247 AWLKDGLKPRCITRDLKWGVPVP---HEKF------------KDK--------------V 277
WL++ +K CI+R L WG +P ++ DK V
Sbjct: 391 NWLRN-IKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDV 449
Query: 278 FYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAP----------FHTVMF 327
WF + S+ T W + E L +F D +
Sbjct: 450 LDTWFSS-----SLWPFSTLGWPD-----ETKDLKKFYPTDLLVTGYDIIFFWVARMIFR 499
Query: 328 PSTLLGTEENWTLMKTISVTEYLNYEAG-KFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386
L G + + K + + + E G K SKS G + DV + A+ R+ L +
Sbjct: 500 SLALTG-QVPF---KEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIE-KYGADALRFTLAS 554
Query: 387 NRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHP 446
D F W+ ++ N LN L N VL ++ G L
Sbjct: 555 LVTPGDDINFDWKRVESARN--FLNKLWNASRFVLMNLSDDLELSGGEEK-------LSL 605
Query: 447 STKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFW----------- 495
+ + + K++ I + +A++K + +E L E W
Sbjct: 606 ADRWILSKLNRTIKEVRKALDKYRF-----------AEAAKALYEF-IWNDFCDWYIELV 653
Query: 496 --KLYNEDQGSCSIVIRTSVGLVYLL---ACLLEPFMPSFSLEVLKQLNVPTET----KF 546
+LYN ++ T L Y+L LL PFMP + E+ + ++ +
Sbjct: 654 KYRLYNGNEAEKKAARDT---LYYVLDKALRLLHPFMPFITEEIWQHFKEGADSIMLQSY 710
Query: 547 SLSDENGDLERARKPWEIL 565
+ D E A K +E+L
Sbjct: 711 PVVDAEFVDEEAEKAFELL 729
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar
to be included.
Length = 606
Score = 44.7 bits (106), Expect = 1e-04
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETK 82
P + H+G+ + L D+ RY R++G++ L++ G D +G TE K
Sbjct: 32 PNATGLLHIGHALNKTLK-DIVIRYKRMQGFDVLWVPGWDHHGLPTEQK 79
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 43.8 bits (104), Expect = 2e-04
Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 28/205 (13%)
Query: 207 IRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGV 266
R T F+ + IKD+L E +K++ W +N WL++ + CI+R WG
Sbjct: 147 YRATPQWFIRVTKIKDRLLEANDKVNWIPEWVKNRF---GNWLEN-RRDWCISRQRYWGT 202
Query: 267 PVP---HEKFKDK-------VFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFM- 315
P+P E + V VWFD+ G + + P E + E + F+
Sbjct: 203 PIPVWYCEDCGEVLVRRVPDVLDVWFDS--GSMPYAQLHYPFENEDF---EELFPADFIL 257
Query: 316 -GKDNAP--FHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAG-KFSKSKGVGVFGNDVK 371
G D F++++ ST L K + V ++ E G K SKS G V +V
Sbjct: 258 EGSDQTRGWFYSLLLLSTAL---FGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVV 314
Query: 372 DTNIPAEVWRYYLITNRPEVSDTLF 396
D A+ R ++ ++ D F
Sbjct: 315 DK-YGADALRLWVASSDVYAEDLRF 338
Score = 39.5 bits (93), Expect = 0.004
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEEN 87
PY N +PH G+ + +L D+ RY ++GY G D +G E K +E
Sbjct: 10 PYANGLPHYGHALNKILK-DIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKEL 62
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 43.2 bits (103), Expect = 4e-04
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 53 DVFARYCRLRGYNALYICGTDEYGTATETK 82
D+ RY R++GYN L++ GTD G AT+
Sbjct: 63 DILIRYKRMQGYNTLWLPGTDHAGIATQMV 92
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 39.8 bits (94), Expect = 0.005
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 23/85 (27%)
Query: 34 PYVNNVPHLGNIIGCVLS---ADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTT 90
P V+ H+G+ V S D ARY R+RGYN + G D+ G TE K
Sbjct: 47 PTVSGSLHIGH----VFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKV------- 95
Query: 91 QQICDKYYAIHKAVYNWFNISFDEF 115
+KYY I K +IS +EF
Sbjct: 96 ----EKYYGIRK-----DDISREEF 111
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 36.7 bits (85), Expect = 0.009
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQI 93
N H+G++ V D A+ R GY I D+ G A ++ +
Sbjct: 6 ITPNGYLHIGHLRTIVT-FDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAF 64
Query: 94 CDKYYAIHKAVYNW 107
+++ K +
Sbjct: 65 VERWIERIKEDVEY 78
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 38.3 bits (89), Expect = 0.015
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 38/172 (22%)
Query: 24 KRNILITSALPYVNNVPHLGNIIGCVLS-ADVFARYCRLRGYNALY-----ICGTDEYGT 77
+ +T A PY+N V H G+ + +V AR+ R++G N L+ + GT G
Sbjct: 24 REKFFLTMAYPYLNGVMHAGH--CRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGL 81
Query: 78 ATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQ-----TEICQAIFK 132
A K +E T + + +AI + +E + + P+ + ++ K
Sbjct: 82 AELIKRRDE--LTIKNYTEVHAIPR----------EELLKFTDPEYIVEYFSREAESACK 129
Query: 133 KL-LENNWLSEYTTQQLYCDTCKRFL---------ADRLVEGSCPTLGCNYD 174
+ +W + T Y D RF+ +V+G P C D
Sbjct: 130 SMGYSIDWRRSFKTTDPYYD---RFIEWQMNKLKELGLIVKGEHPVRYCPKD 178
Score = 30.2 bits (68), Expect = 4.7
Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 39/165 (23%)
Query: 323 HTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKG--------VGVFGNDVKDTN 374
H +FP E+ W + I V Y+ E K SKSKG V FG
Sbjct: 595 HVAIFP------EKFWP--RGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFG------- 639
Query: 375 IPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGS 434
A+V R Y+ V D W++ + + L L F I K G
Sbjct: 640 --ADVARLYIADAAETVQD--ADWKESEVEGTILRLERLYEFAEE----ITKESNLETGE 691
Query: 435 IIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGM 479
+ +++ I + EAME + ++ ++ +
Sbjct: 692 ETSFIDRWLES--------RMNAAIKETYEAMENFQTRKAVKYAL 728
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 38.0 bits (88), Expect = 0.016
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATE 80
P V HLG+ + L DV R+ R+ G+N L++ GTD G AT+
Sbjct: 57 PNVTGSLHLGHALTATLQ-DVLIRWKRMSGFNTLWLPGTDHAGIATQ 102
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 37.7 bits (88), Expect = 0.018
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 197 RCKVCQATPKI-RDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKP 255
R K TP I R T+ F++ IKD++ E I K++ W + WL++
Sbjct: 411 RTK----TPVIYRATEQWFIKTKDIKDQMLEQIKKVNWVPEWGEGRFG---NWLEN-RPD 462
Query: 256 RCITRDLKWGVPVP 269
CI+R WG+P+P
Sbjct: 463 WCISRQRYWGIPIP 476
Score = 35.8 bits (83), Expect = 0.068
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEEN 87
PY N HLG+ + +L D+ RY ++G+N G D +G E K ++
Sbjct: 45 PYANGSIHLGHALNKILK-DIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKL 97
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 36.7 bits (85), Expect = 0.039
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 41 HLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENC----TTQQICDK 96
H+G+ G + D+ ARY R++GYN L+ G D +G E A+E TT + +
Sbjct: 127 HVGHPEGYTAT-DILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIAR 185
Query: 97 YYAIHKAV---YNWFNISFDEFGRTSTPQQTEICQAIFKKLLE 136
+ + K++ Y+W D T+ P+ + Q IF +LL+
Sbjct: 186 FRSQLKSLGFSYDW-----DREISTTEPEYYKWTQWIFLQLLK 223
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 36.5 bits (85), Expect = 0.051
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 53 DVFARYCRLRGYNALYICGTDEYGTATET 81
D RY R++G L++ GTD G AT+
Sbjct: 87 DSLIRYHRMKGDETLWVPGTDHAGIATQV 115
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
aminoacyl tRNA synthetases and similar domains. This
domain is found in a variety of class Ia aminoacyl tRNA
synthetases, C-terminal to the catalytic core domain. It
recognizes and specifically binds to the anticodon of
the tRNA. Aminoacyl tRNA synthetases catalyze the
transfer of cognate amino acids to the 3'-end of their
tRNAs by specifically recognizing cognate from
non-cognate amino acids. Members include valyl-,
leucyl-, isoleucyl-, cysteinyl-, arginyl-, and
methionyl-tRNA synthethases. This superfamily also
includes a domain from MshC, an enzyme in the mycothiol
biosynthetic pathway.
Length = 117
Score = 34.0 bits (78), Expect = 0.053
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Query: 412 NLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKL 471
N + R+LSF K G P L + + L ++ I + A+E +
Sbjct: 9 AFLNRLYRLLSFFRKALGGT----QPKWDNELLEEADRELLARLQEFIKRTTNALEALDP 64
Query: 472 KQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFM 527
++ ++E N YL E + E + + V+R LV L LL PF
Sbjct: 65 TTAVQELFKFTNELNWYLDELKPALQTEELREAVLAVLRA--ALVVLTK-LLAPFT 117
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 36.1 bits (83), Expect = 0.072
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATE 80
P V H+G+ + L D+ RY R++G L+I GTD G AT+
Sbjct: 97 PNVTGSLHMGHAMFVTLE-DIMVRYNRMKGRPTLWIPGTDHAGIATQ 142
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 36.0 bits (84), Expect = 0.076
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 26/153 (16%)
Query: 323 HTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRY 382
H +FP EE W + I V ++ E K SKSKG + + A+V R
Sbjct: 552 HVAIFP------EEKWP--RGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEY-GADVVRL 602
Query: 383 YLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKA 442
YL ++ E+ D+ + + ++ + R + +I +
Sbjct: 603 YLTSS-AELLQDA----DW----REKEVESVRRQLERFYELAKE--------LIEIGGEE 645
Query: 443 DLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGL 475
+L K L +++ I + EAME + + +
Sbjct: 646 ELRFIDKWLLSRLNRIIKETTEAMESFQTRDAV 678
Score = 33.7 bits (78), Expect = 0.39
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 52 ADVFARYCRLRGYNALY 68
DV ARY R+RGYN L+
Sbjct: 12 GDVIARYKRMRGYNVLF 28
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 35.6 bits (82), Expect = 0.084
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTAT----ETKAMEENCT 89
P V H+G+ + + D R+ R+ GYNAL++ G D G AT E K M E
Sbjct: 137 PNVTGALHIGHALTAAIE-DTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHL 195
Query: 90 TQ 91
T+
Sbjct: 196 TR 197
>gnl|CDD|226354 COG3833, MalG, ABC-type maltose transport systems, permease
component [Carbohydrate transport and metabolism].
Length = 282
Score = 34.9 bits (81), Expect = 0.088
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 309 VALYQFMGKDNAPFHTVMFPSTLLGTEENWTL 340
VAL F+G PF + S LL EN+TL
Sbjct: 203 VALLAFIG----PFGDFILASLLLRDPENYTL 230
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 35.3 bits (82), Expect = 0.11
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 18/91 (19%)
Query: 197 RCKVCQATPKI-RDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKP 255
R K TP I R T F+ + ++DK+ + INK++ W +N +++
Sbjct: 405 RTK----TPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDWGKNRF---GNMVEN---- 453
Query: 256 R---CITRDLKWGVPVP---HEKFKDKVFYV 280
R CI+R WGVP+P ++ + +
Sbjct: 454 RPDWCISRQRYWGVPIPVWYCKETGEILVIT 484
Score = 33.7 bits (78), Expect = 0.37
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEEN 87
PY N H+G+ + +L D+ RY ++GY+ Y+ G D +G E K ++
Sbjct: 58 PYANGNIHIGHALNKILK-DIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKL 110
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 34.6 bits (80), Expect = 0.13
Identities = 13/77 (16%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQI 93
P V + H+G+ V + DV RY + GY+ ++ + +A ++ + +++
Sbjct: 17 PTVYDDSHIGHARSAV-AFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQQGESFREL 75
Query: 94 CDKYYAIHKAVYNWFNI 110
++ + + N+
Sbjct: 76 AARFITAYTKDMDALNV 92
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 34.3 bits (80), Expect = 0.24
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 34/104 (32%)
Query: 53 DVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNI-- 110
DV ARY R++GYN L+ G D +G E A++ H A + + NI
Sbjct: 59 DVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTG------------THPAEWTYENIAN 106
Query: 111 ----------SFD---EFGRTSTP---QQTEICQAIFKKLLENN 138
S+D E T P + T Q IF KL E
Sbjct: 107 MKKQLKSLGFSYDWSREI-ATCDPEYYKWT---QWIFLKLYEKG 146
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 33.8 bits (78), Expect = 0.31
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 26/120 (21%)
Query: 34 PYVNNVPHLGNI-IGCVL---SADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCT 89
PY N GNI IG L DV R ++ G++A Y+ G D +G E
Sbjct: 63 PYAN-----GNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIE--------- 108
Query: 90 TQQICDKYYAIHKAVYNWFNISFDEF---GRTSTPQQTEICQAIFKKL-LENNWLSEYTT 145
+I +KY A K N + EF R ++ + FK+L + +W + YTT
Sbjct: 109 -WKIEEKYRAKGK---NKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTT 164
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS)
catalytic core domain. This class I enzyme is a monomer
which aminoacylates the 2'-OH of the nucleotide at the
3' of the appropriate tRNA. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in
ATP binding.
Length = 213
Score = 32.9 bits (76), Expect = 0.36
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICG-TDEYGTATETKAMEENCTTQQ 92
P V + H+G+ V DV RY GY Y+ TD +A EE + ++
Sbjct: 28 PTVYDYAHIGHARTYV-VFDVLRRYLEDLGYKVRYVQNITD-IDDKIIKRAREEGLSWKE 85
Query: 93 ICDKY 97
+ D Y
Sbjct: 86 VADYY 90
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 33.2 bits (77), Expect = 0.57
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYN 65
P N +PH G+++ + DV RY ++GY
Sbjct: 50 PTANGLPHYGHLLTRTIK-DVVPRYKTMKGYK 80
>gnl|CDD|224302 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation,
ribosomal structure and biogenesis].
Length = 521
Score = 31.9 bits (73), Expect = 0.97
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 350 LNYE------AGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPE 390
YE GK S SKG + +D + P EV RY + +P
Sbjct: 265 FVYEWILLKGGGKMSSSKGNVISLSDWLEV-APPEVLRYLIARTKPN 310
>gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23
[Intracellular trafficking and secretion].
Length = 755
Score = 31.8 bits (72), Expect = 1.2
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 124 TEICQAIFKKLLEN----NWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGD 179
T+ C+ +LE W + L C +A L+E P GC+ G
Sbjct: 228 TQQCEFKLLNILEQLQPDPWPVPAGKRPLRCTGSALNIASSLLEQCFPNAGCHIVLFAGG 287
Query: 180 QCEKCGKLLNPTELKDP 196
C + TELK+P
Sbjct: 288 PCTVGPGTVVSTELKEP 304
>gnl|CDD|236408 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed.
Length = 790
Score = 31.8 bits (73), Expect = 1.2
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 454 KISNHIDQYIEAMEKVKLKQGLRIGMSISSE-------------GNAYLQESQFWKLYNE 500
K+ + + Q IEA E V++ + R SI+ + G A +E +F+++YN
Sbjct: 327 KLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNM 386
Query: 501 D 501
+
Sbjct: 387 E 387
>gnl|CDD|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.
Length = 510
Score = 31.3 bits (72), Expect = 1.5
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 11/46 (23%)
Query: 348 EYLNYE------AGKFSKSKGVGVFGNDVKD--TNIPAEVWRYYLI 385
E YE K SKSKG + ++D P E R ++
Sbjct: 266 EPFVYELFLDKKGEKISKSKGNVI---TIEDWLEYAPPESLRLFMF 308
>gnl|CDD|183704 PRK12726, PRK12726, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 407
Score = 30.9 bits (69), Expect = 2.1
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 554 DLERARKPWEILPAGHRIGMSSPLFKELK--DEDVRFFREKFAGSQADRAVQAEAEAKRL 611
DL + K E+L AG + S+PL +E K +E++ R + A + AV+ E ++
Sbjct: 85 DLLKKEKLLEMLAAGAELAQSTPLLEERKTQEEELSAMRLELAALNRELAVKMREEREQN 144
Query: 612 AEHLKKTK 619
++ +K K
Sbjct: 145 SDFVKFLK 152
>gnl|CDD|188785 cd09401, LIM_TLP_like, The LIM domains of thymus LIM protein
(TLP). The LIM domain of thymus LIM protein (TLP) like
proteins: This family includes the LIM domains of TLP
and CRIP (Cysteine-Rich Intestinal Protein). TLP is the
distant member of the CRP family of proteins. TLP has
two isomers (TLP-A and TLP-B) and sharing approximately
30% with each of the three other CRPs. Like CRP1, CRP2
and CRP3/MLP, TLP has two LIM domains, connected by a
flexible linker region. Unlike the CRPs, TLP lacks the
nuclear targeting signal (K/R-K/R-Y-G-P-K) and is
localized solely in the cytoplasm. TLP is specifically
expressed in the thymus in a subset of cortical
epithelial cells. TLP has a role in development of
normal thymus and in controlling the development and
differentiation of thymic epithelial cells. CRIP is a
short LIM protein with only one LIM domain. CRIP gene is
developmentally regulated and can be induced by
glucocorticoid hormones during the first three postnatal
weeks. The domain shows close sequence homology to LIM
domain of thymus LIM protein. However, unlike the TLP
proteins which have two LIM domains, the members of this
family have only one LIM domain. LIM domains are 50-60
amino acids in size and share two characteristic zinc
finger motifs. The two zinc fingers contain eight
conserved residues, mostly cysteines and histidines,
which coordinately bond to two zinc atoms. LIM domains
function as adaptors or scaffolds to support the
assembly of multimeric protein complexes.
Length = 53
Score = 27.7 bits (62), Expect = 2.1
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 181 CEKCGKLLNPTELKD----PRCKVC 201
CEKC K L P + + P C C
Sbjct: 28 CEKCKKTLTPGQHSEHEGKPYCNKC 52
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 30.9 bits (70), Expect = 2.8
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 7/23 (30%)
Query: 257 CITRDLKWGVPVPHEKFKDKVFY 279
CI+R WGVP+P VFY
Sbjct: 470 CISRQRTWGVPIP-------VFY 485
Score = 29.4 bits (66), Expect = 7.8
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAME 85
PY N H+G+ + +L D RY L+G Y+ G D +G E K ++
Sbjct: 41 PYANGDLHIGHALNKILK-DFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQ 91
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 30.6 bits (69), Expect = 3.0
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 15/60 (25%)
Query: 150 CDTCKRFLADR---LVEG-------SCPTLGCNY-----DSARGDQCEKCGKLLNPTELK 194
C CK ++ R L E CP GC ++ CEKCG+ E++
Sbjct: 410 CRNCKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQQGEME 469
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including
Methanococcus jannaschii, are not found, although
biochemical evidence suggests that tRNA(Cys) in these
species are charged directly with Cys rather than
through a misacylation and correction pathway as for
tRNA(Gln) [Protein synthesis, tRNA aminoacylation].
Length = 464
Score = 30.4 bits (69), Expect = 3.1
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQI 93
P V + H+G+ + DV RY R GY Y+ + +A E + ++
Sbjct: 29 PTVYDYCHIGHARTAI-VFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEV 87
Query: 94 CDKY 97
+++
Sbjct: 88 SERF 91
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 30.6 bits (70), Expect = 3.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 434 SIIPDSPKADLHPSTKMLAEKISNHI 459
SI+P +L+ T M+AEK ++ I
Sbjct: 506 SIMPTITNGNLNAPTIMIAEKAADLI 531
>gnl|CDD|239441 cd03325, D-galactonate_dehydratase, D-galactonate dehydratase
catalyses the dehydration of galactonate to
2-keto-3-deoxygalactnate (KDGal), as part of the
D-galactonate nonphosphorolytic catabolic
Entner-Doudoroff pathway. D-galactonate dehydratase
belongs to the enolase superfamily of enzymes,
characterized by the presence of an enolate anion
intermediate which is generated by abstraction of the
alpha-proton of the carboxylate substrate by an active
site residue and is stabilized by coordination to the
essential Mg2+ ion.
Length = 352
Score = 30.4 bits (69), Expect = 3.2
Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 28/139 (20%)
Query: 46 IGCVLSADV--FARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKA 103
IG +DV AR R G+ A+ + T+E +K ++ A+ +A
Sbjct: 119 IGGDRPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVA------ALREA 172
Query: 104 VYNWFNISFDEFGRTSTPQQTEICQAI------FKK---LLENNW----LSEYTT----- 145
V +I D GR S P ++ + + F + L EN ++ TT
Sbjct: 173 VGPDIDIGVDFHGRVSKPMAKDLAKELEPYRLLFIEEPVLPENVEALAEIAARTTIPIAT 232
Query: 146 -QQLYCD-TCKRFLADRLV 162
++L+ K L D V
Sbjct: 233 GERLFSRWDFKELLEDGAV 251
>gnl|CDD|234238 TIGR03508, decahem_SO, decaheme c-type cytochrome, DmsE family.
Members of this family are small, decaheme c-type
cytochromes, related DmsE of Shewanella oneidensis MR-1,
which has been shown to be part of an anaerobic dimethyl
sulfoxide reductase.
Length = 258
Score = 30.1 bits (68), Expect = 3.4
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 110 ISFDEFGRTSTPQQTEICQAIFKKLLENNWL-SEYTTQQLYCDTC 153
I+F F +Q +C + K +NW S + + C +C
Sbjct: 56 ITFGSFSNLPAEKQNSVCLSCHKDGTRSNWHGSVHARNDVACTSC 100
>gnl|CDD|163426 TIGR03714, secA2, accessory Sec system translocase SecA2. Members
of this protein family are homologous to SecA and part
of the accessory Sec system. This system, including both
five core proteins for export and a variable number of
proteins for glycosylation, operates in certain
Gram-positive pathogens for the maturation and delivery
of serine-rich glycoproteins such as the cell surface
glycoprotein GspB in Streptococcus gordonii [Protein
fate, Protein and peptide secretion and trafficking].
Length = 762
Score = 30.4 bits (69), Expect = 3.5
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
Query: 454 KISNHIDQYIEAMEKVKLKQGLRIGMSISSE-------------GNAYLQESQFWKLYN 499
K+ + I Q IEA E V+L + R SI+ + G + E +F + Y+
Sbjct: 323 KLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYS 381
>gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase.
Length = 322
Score = 29.9 bits (67), Expect = 3.8
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 449 KMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIV 508
+L E + D+ IE + + LK+GL +G+S + A ++ ++ E+ G +V
Sbjct: 238 DLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAK----RPENAGKLIVV 293
Query: 509 IRTSVGLVYLLACLLE 524
I S G YL + L E
Sbjct: 294 IFPSFGERYLSSVLFE 309
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 29.7 bits (68), Expect = 5.4
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 23/77 (29%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALY-----------ICGTDEYGTATETK 82
P V + H+G+ V DV RY R GY Y I +
Sbjct: 31 PTVYDYAHIGHARSFV-VFDVLRRYLRYLGYKVTYVRNITDIDDKII-----------KR 78
Query: 83 AMEENCTTQQICDKYYA 99
A EE + +++ ++Y A
Sbjct: 79 ANEEGESIKELTERYIA 95
>gnl|CDD|185508 PTZ00194, PTZ00194, 60S ribosomal protein L26; Provisional.
Length = 143
Score = 28.6 bits (64), Expect = 5.9
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 23/79 (29%)
Query: 557 RARKPWEILPAG-HRIGMSSPLFKEL------------KDEDVRFFREKFAGSQADRAVQ 603
+ARK P+ R MS+PL KEL KD++V R G
Sbjct: 11 KARKAHFTAPSHLRRKLMSAPLSKELRAKYNVRSMPVRKDDEVMVVRGHHKGR------- 63
Query: 604 AEAEAKRLAEHLKKTKISV 622
E K A + KK I +
Sbjct: 64 ---EGKVTAVYRKKWVIHI 79
>gnl|CDD|216786 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K). This family
includes only lysyl tRNA synthetases from prokaryotes.
Length = 357
Score = 29.5 bits (67), Expect = 6.1
Identities = 24/107 (22%), Positives = 33/107 (30%), Gaps = 30/107 (28%)
Query: 297 PDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEA-- 354
DW W V ++ GKD H S + I+ E L E
Sbjct: 221 VDWAMRWAA-LGVD-FEPFGKD----HAAPGGSYDTSSR--------IA-REILGGEPPE 265
Query: 355 ------------GKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRP 389
GK S SKG + D + P E R+ + +P
Sbjct: 266 PFPYELILLKGGGKMSSSKGNVITIEDWLEY-APPESLRFLMFRVKP 311
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 29.1 bits (66), Expect = 7.0
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICG-TDEYGTATETK----AMEENC 88
P V + H+G+ V+ DV RY R GY Y+ TD + K A EE
Sbjct: 30 PTVYDYAHIGHARTYVVF-DVLRRYLRYLGYKVTYVRNITD-----IDDKIINRAREEGL 83
Query: 89 TTQQICDKY 97
+ +++ ++Y
Sbjct: 84 SIREVAERY 92
>gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.
Length = 212
Score = 28.7 bits (65), Expect = 7.7
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 11/45 (24%)
Query: 271 EKFKDKV----FYVWFDAPIGYISITSCYTPDWEEW---WKNPEN 308
+ FK V W + Y+S TS +T + EW W N E
Sbjct: 87 DLFKAAVAVVPVVDW----LTYMSDTSPFTERYMEWGNPWDNEEG 127
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic
core domain. TyrRS is a homodimer which attaches Tyr to
the appropriate tRNA. TyrRS is a class I tRNA
synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formationof the enzyme bound
aminoacyl-adenylate. It contains the class I
characteristic HIGH and KMSKS motifs, which are involved
in ATP binding.
Length = 269
Score = 28.7 bits (65), Expect = 9.4
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 355 GKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSD--TLFT 397
GK SKS+G ++ + V D+ P +V++ P+V + LFT
Sbjct: 194 GKMSKSEGNAIW-DPVLDS--PYDVYQKIRNAFDPDVLEFLKLFT 235
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.421
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,912,353
Number of extensions: 3095165
Number of successful extensions: 3108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3009
Number of HSP's successfully gapped: 84
Length of query: 625
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 522
Effective length of database: 6,369,140
Effective search space: 3324691080
Effective search space used: 3324691080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)