RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 006917
(625 letters)
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 815 bits (2107), Expect = 0.0
Identities = 207/612 (33%), Positives = 319/612 (52%), Gaps = 44/612 (7%)
Query: 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAM 84
++TSALPY N H G++ G L AD+F RY RL+G + ++ICGTDE+GT +A+
Sbjct: 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL 61
Query: 85 EENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYT 144
+E + ++I D+++ K + ISFD FGRT P ++ Q F K EN L +
Sbjct: 62 KEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKV 121
Query: 145 TQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQAT 204
T+Q YC+ K FL DR V G+CP C + +GDQCE CG+ L P L +PRC +C
Sbjct: 122 TKQAYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEVCGRPLTPEILINPRCAICGRP 179
Query: 205 PKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKW 264
RD+ H ++++ ++L+ +I K W N +W+++GL+ R ITRDL W
Sbjct: 180 ISFRDSAHYYIKMQDFAERLKRWIEK----QPWKPNVKNMVLSWIEEGLEERAITRDLNW 235
Query: 265 GVPVP--HEKFKDKVFYVWFDAPIGYISITSCY------TPDWEEWWKNPE-NVALYQFM 315
G+PVP E K KV YVWF+APIGYISIT + +W+++W N + + F+
Sbjct: 236 GIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFI 295
Query: 316 GKDNAPFHTVMFPSTLLG--------TEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFG 367
GKDN PFH + +P+ L+ E W L I EYL E KFS S+ ++
Sbjct: 296 GKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWV 355
Query: 368 NDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKP 427
++ D PA+ RYYL T PE D+ F++ DF+ ++N EL+NNLGNFV+R L+F+ +
Sbjct: 356 HEFLDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRY 414
Query: 428 PGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNA 487
+ ++P+ +L + E+I + E + + K L+ MS++S GN
Sbjct: 415 ----FDGVVPER--GELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNR 468
Query: 488 YLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFS 547
Y Q WK ED+ + S+ +V L LLEPF+P S ++ LN+ ++
Sbjct: 469 YFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEVKRWE 528
Query: 548 LSDENGDLERARKPWEILPAGHRIGMSSPLFKELKDEDVRFFREKFAGSQADRAVQAEAE 607
+ LPAGH++ LFK++ D+ + +F + + +
Sbjct: 529 FRE--------------LPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARILLD 574
Query: 608 AKRLAEHLKKTK 619
E + +
Sbjct: 575 KYYKREDVIRVA 586
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 777 bits (2008), Expect = 0.0
Identities = 152/592 (25%), Positives = 256/592 (43%), Gaps = 45/592 (7%)
Query: 10 GERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYI 69
G +H + IL+T A PY N HLG+++ + ADV+ RY R+RG+ +I
Sbjct: 3 GSHHHHHHGSMTQVAKKILVTCASPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFI 61
Query: 70 CGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQA 129
C D +GT KA + T +Q+ + H+ + FNIS+D + T + + ++ +
Sbjct: 62 CADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSEL 121
Query: 130 IFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLN 189
I+ +L EN ++ T QLY FL DR V+G+CP C GD CE CG +
Sbjct: 122 IYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPK--CKSPDQYGDNCEVCGATYS 179
Query: 190 PTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWL 249
PTEL +P+ V ATP +RD++H F +LP + L+ + SG+ + W
Sbjct: 180 PTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWF 235
Query: 250 KDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYT------PDWEEWW 303
+ GL+ I+RD + K FYVW DAPIG + ++E+W
Sbjct: 236 ESGLQQWDISRDAPY-FGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYW 294
Query: 304 KNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGV 363
K LY F+GKD F ++ +P+ L G+ N+ + V Y+ K SKS+G
Sbjct: 295 KKDSTAELYHFIGKDIVYFLSLFWPAMLEGS--NFRKPSNLFVHGYVTVNGAKMSKSRGT 352
Query: 364 GVFGNDVKDTNIPAEVWRYYLITN-RPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLS 422
+ + + A+ RYY + D EDF ++N +++N + N +R
Sbjct: 353 FIKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAG 411
Query: 423 FIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSIS 482
FI K + ++ + L + ++ + EA E + + +R M+++
Sbjct: 412 FINK----RFDGVLASE------LADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA 461
Query: 483 SEGNAYLQESQFWKLYNED--QGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540
N Y+ E W + ++ + + L +L L+P +P + LN
Sbjct: 462 DLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT 521
Query: 541 PTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPLFKELKDEDVRFFREK 592
+ ++P GH++ L+ + V E
Sbjct: 522 E-----------LTWDGIQQP----LLGHKVNPFKALYNRIDMRQVEALVEA 558
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 297 bits (763), Expect = 1e-93
Identities = 130/607 (21%), Positives = 220/607 (36%), Gaps = 96/607 (15%)
Query: 1 MGDSEQEPDGERNHRVAKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCR 60
M G + + IT+A+ Y N PH+G+ +++ D AR+ R
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMSREKYYITTAIAYPNGKPHIGHAY-ELIATDAMARFQR 59
Query: 61 LRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTST 120
L G + ++ GTDE+G A +E T + + D+ + + + N S D++ RTS
Sbjct: 60 LNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSE 119
Query: 121 PQQTEICQAIFKKLLENN--WLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARG 178
+ + QAI++ ++ N + Y Y + + + E
Sbjct: 120 ERHYKASQAIWQAMVANGDIYKGGYAG--WYSVRDEAYYGEEETE--------------- 162
Query: 179 DQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWS 238
R + + + F L +DKL + +
Sbjct: 163 ------------VRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYEN-------N 203
Query: 239 QNAIQGTY------AWLKDGLKPRCITR-DLKWGVPVPHEKFKDKVFYVWFDAPIGYISI 291
I +++K GLK I+R WG+PVP + + V YVW DA YI+
Sbjct: 204 PGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGD--EKHVMYVWVDALTNYITA 261
Query: 292 TSCYTPD--WEEWWKNPENVALYQFMGKDNAPFHTVMFPSTL--LGTEENWTLMKTISVT 347
+W P N +GKD + FH V +P+ L L K +
Sbjct: 262 LGYPDTTDERWAYW--PANA---HIIGKDISRFHAVYWPAFLMSAQLP----LPKRVFAH 312
Query: 348 EYLNYEAGKFSKSKG--------VGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWE 399
+L K SKS G V +G D RY+L+ P D ++ E
Sbjct: 313 GFLFNRGEKMSKSVGNVIDPFELVERYGLD---------QLRYFLMREVPFGQDGSYSHE 363
Query: 400 DFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHI 459
+ N +L N+LGN R LS IAK +P + K + ++ +
Sbjct: 364 AIVNRTNADLANDLGNLAQRSLSMIAK----NCEGKVPQ--PGAFSEADKAILDQADAAL 417
Query: 460 DQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLL 519
+ +AM+ L L ++ +E N Y + W L D V+ + ++ +
Sbjct: 418 ETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRV 477
Query: 520 ACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPLFK 579
+++PF+P + ++L L VP + L G + P+F
Sbjct: 478 GIMVQPFIPQSAEKLLDILAVP--------ADKRQFADVL--ASPLAGGTDLPAPQPVFP 527
Query: 580 --ELKDE 584
DE
Sbjct: 528 RYVEADE 534
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 292 bits (751), Expect = 3e-92
Identities = 124/579 (21%), Positives = 222/579 (38%), Gaps = 105/579 (18%)
Query: 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKA 83
++ +T+ + YVN PHLG+ + AD AR+ RL GY ++ GTDE+G A
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAY-TTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAA 60
Query: 84 MEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENN--WLS 141
+ D+ K ++ I++D+F RT+ + ++ Q + KK+ E +
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYG 120
Query: 142 EYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVC 201
EY LYC +C+RF + EL + C +
Sbjct: 121 EYEG--LYCVSCERFYTE-------------------------------KELVEGLCPIH 147
Query: 202 QATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTY------AWLKDGLKP 255
+ R + F + + L+EYI + + + I+ A L + +
Sbjct: 148 GRPVERRKEGNYFFRMEKYRPWLQEYIQE-------NPDLIRPEGYRNEVLAMLAEPIGD 200
Query: 256 RCITRD---LKWGVPVP-HEKFKDKVFYVWFDAPIGYISITSCYTPD--WEEWWKNPENV 309
I+R + WG+P+P E V +VWFDA + Y+S Y + +W P
Sbjct: 201 LSISRPKSRVPWGIPLPWDENH---VTFVWFDALLNYVSALD-YPEGEAYRTFW--PHAW 254
Query: 310 ALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYL-NYEAGKFSKSKG------ 362
+GKD H V +P+ L + + ++V +L + K SK+ G
Sbjct: 255 ---HLIGKDILKPHAVFWPTMLKAAGI--PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPF 309
Query: 363 --VGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRV 420
+ +G D RYYL+ P DT + E + + +L ++LGN V R
Sbjct: 310 ALLEKYGRDA---------LRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRT 360
Query: 421 LSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMS 480
+ + + IP+ P + + + + ++K L M+
Sbjct: 361 RAMLFRF----AEGRIPE-------PVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMA 409
Query: 481 ISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNV 540
N Y+ E + W+L+ ++ V+ V + + + LL P MP E+ + L +
Sbjct: 410 YVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGL 469
Query: 541 PTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPLFK 579
E + ++ W + + LF
Sbjct: 470 KEEVRLEEAER----------WGLAEPRPIPEEAPVLFP 498
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 291 bits (746), Expect = 2e-91
Identities = 139/589 (23%), Positives = 218/589 (37%), Gaps = 101/589 (17%)
Query: 23 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETK 82
G IT+A+ Y N VPH+G+ ++ D AR+ RL GY+ Y+ GTD +G
Sbjct: 10 GSEPFYITTAIAYPNGVPHIGHAY-EYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAET 68
Query: 83 AMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENN--WL 140
A +E ++ + + + + NISFD F RTS E +AI+K++ + +L
Sbjct: 69 AAKEGIPAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYL 128
Query: 141 SEYTTQQLYCDTCKRFLADR-LVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCK 199
Y Y +RF + E
Sbjct: 129 DAYKG--WYSIRDERFFTENETTEQ---------------------------PDGTRIAT 159
Query: 200 VCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTY------AWLKDGL 253
A + F L D+L + I +++ GL
Sbjct: 160 ETGAPVTWTEEQTYFFRLSAYTDRLLALYEE-------HPEFIGPDARRNEIVSFVSGGL 212
Query: 254 KPRCITR-DLKWGVPVPHEKFKDKVFYVWFDAPIGYISIT---SCYTPDWEEWWKNPENV 309
K I+R WGVPVP D V YVW DA Y++ + + +W P ++
Sbjct: 213 KDLSISRTTFDWGVPVPDHP--DHVMYVWVDALTNYLTGVGFPDTESESFRRYW--PADL 268
Query: 310 ALYQFMGKDNAPFHTVMFPSTL--LGTEENWTLMKTISVTEYLNYEAGKFSKSKG----- 362
+GKD FHTV +P+ L G L K I +L K SKS G
Sbjct: 269 ---HMIGKDIIRFHTVYWPAFLMSAGLP----LPKRIFAHGWLLNRGEKMSKSIGNVVDP 321
Query: 363 ---VGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNR 419
V FG D RY+L+ P D + + ++N +L N LGN R
Sbjct: 322 VNLVDTFGLDQ---------VRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQR 372
Query: 420 VLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGM 479
LS +AK G+ +PD + L +++ E + + L
Sbjct: 373 SLSMVAK----NLGAAVPDP--GEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIW 426
Query: 480 SISSEGNAYLQESQFWKLY----NEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVL 535
S+ N Y + W L EDQ V+ T++ +V + + LL+P MP + ++L
Sbjct: 427 SVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLL 486
Query: 536 KQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPLFKELKDE 584
L PT+ + D + G + S +F +++
Sbjct: 487 DLLGQPTDER--------DFSAI---ANRIKPGTSLPAPSGIFPRYQND 524
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 289 bits (742), Expect = 3e-90
Identities = 119/596 (19%), Positives = 216/596 (36%), Gaps = 98/596 (16%)
Query: 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKA 83
++ T+ + YVN PH+G++ L DV RY R++G + GTDE+G A
Sbjct: 25 QKVFFATTPIYYVNASPHIGHVY-STLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAA 83
Query: 84 MEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNW--LS 141
++ + + K + N + F RT+ P ++ Q I+KKL L
Sbjct: 84 AKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLG 143
Query: 142 EYTTQQLYCDTCKRFLADR-LVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKV 200
+Y + Y + + FL + + +G D + G
Sbjct: 144 KY--EGWYSVSDESFLTAQNVADGVDR------DGKPCKVSLESGH---VVTW------- 185
Query: 201 CQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTY------AWLKDGLK 254
+ ++ L +++L +Y + N I + ++ GL
Sbjct: 186 -------VEEENYMFRLSAFRERLLKYFHD-------HPNCIVPEFRRREVIKTVEKGLF 231
Query: 255 PRCITRD----LKWGVPVPHEKFKDKVFYVWFDAPIGYIS-ITSCYTPDWEEWWKNPENV 309
I+R + W +PVP ++ YVW DA Y + + D E +
Sbjct: 232 DLSISRKRESVMNWSIPVPGDE--RHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHA 289
Query: 310 ALY-----QFMGKDNAPFHTVMFPSTL--LGTEENWTLMKTISVTEYLNYEAGKFSKSKG 362
+GKD FH + +P+ L L + + + + K SKS G
Sbjct: 290 LNRWPADVHVVGKDILKFHAIYWPAFLMSAELP----LPERLVSHGWWTKDHKKISKSLG 345
Query: 363 --------VGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLG 414
FG D +Y+L+ D ++ ++ A+LN EL + LG
Sbjct: 346 NAFDPVEKAKEFGIDA---------LKYFLMRESNFQDDGDYSDKNMVARLNGELADTLG 396
Query: 415 NFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQG 474
N V+R ++ + P+ A+ S K L ++N ++
Sbjct: 397 NLVSRCVAPKIN-----VNGMWPEP--AEYSESDKTLIASLNNLAGTVDHYYCLPDIQHA 449
Query: 475 LRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEV 534
L + NAY+ E+ WKL D V+ ++ + + L+P MP + E+
Sbjct: 450 LIAIFDVLRSLNAYVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEI 509
Query: 535 LKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSS---PLFK--ELKDED 585
+ L VP + + + + I+ G +I + +F+ L E+
Sbjct: 510 MDALGVPEAARVGMENYL---------FGIVKPGTKIAGLAEGQVVFQKVTLPTEE 556
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 281 bits (721), Expect = 6e-88
Identities = 146/572 (25%), Positives = 231/572 (40%), Gaps = 98/572 (17%)
Query: 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKA 83
+ +T+ + YVN+VPHLG+ ++AD ARY RLR Y+ ++ GTDE+G + KA
Sbjct: 4 MKKFYVTTPIYYVNDVPHLGHAY-TTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKA 62
Query: 84 MEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENN--WLS 141
E + +++ D+ K ++ + I + +F RT+ P + Q +F++ + +L
Sbjct: 63 EELGISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLG 122
Query: 142 EYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTEL-KDPRCKV 200
EY YC C+ F + EL +D C +
Sbjct: 123 EYEG--WYCVGCEEFK-------------------------------SEAELAEDHTCPI 149
Query: 201 CQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTY------AWLKDGLK 254
Q + F L +DKL E K + IQ Y +++K GLK
Sbjct: 150 HQKKCEYIKEPSYFFRLSKYQDKLLELYEK-------NPEFIQPDYRRNEIISFVKQGLK 202
Query: 255 PRCITRD---LKWGVPVP-HEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVA 310
+TR +KWG+PVP + YVWFDA YIS E +W P ++
Sbjct: 203 DLSVTRPRSRVKWGIPVPFDPEH---TIYVWFDALFNYISALE---DKVEIYW--PADL- 253
Query: 311 LYQFMGKDNAPFHTVMFPSTL--LGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGN 368
+GKD FHTV +P+ L LG E L K + + E K SK+ G V
Sbjct: 254 --HLVGKDILRFHTVYWPAFLMSLGYE----LPKKVFAHGWWTVEGKKMSKTLGNVVDPY 307
Query: 369 DVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPP 428
+V + RY+L+ P D F+ + ++N EL N +GN +RV++ K
Sbjct: 308 EVVQE-YGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHK-- 364
Query: 429 GRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAY 488
G + + A+ I Y MEKV + + + +S N Y
Sbjct: 365 --FLGGEVSG-------ARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKY 415
Query: 489 LQESQFWKLY-NEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFS 547
+ E Q W L + V+ V +++L LL P P+ E L+ L
Sbjct: 416 VDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEK------ 469
Query: 548 LSDENGDLERARKPWEILPAGHRIGMSSPLFK 579
E ++ +++G LF
Sbjct: 470 --------EFLKELKPYSKNTYKLGERKILFP 493
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 278 bits (713), Expect = 3e-86
Identities = 110/581 (18%), Positives = 203/581 (34%), Gaps = 69/581 (11%)
Query: 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKA 83
++ +TS + YVN PH+G++ L DV RY R++G + GTDE+G A
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVY-STLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAA 66
Query: 84 MEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEY 143
++ + K + + S D F RT+ Q + + ++ KL + +
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 144 TTQQLYCDTCKRFLADR-LVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQ 202
+ Y + + FL + + +G
Sbjct: 127 RYEGWYSISDESFLTPQNITDGVD-----------------------KDGNPCKVSLESG 163
Query: 203 ATPKIRDTDHLFLELPLIKDKLEEYI--NKMSVSGSWSQNAIQGTYAWLKDGLKPRCITR 260
++ L +++L E+ N + + + + ++ GL ++R
Sbjct: 164 HVVTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVI---RAVEKGLPDLSVSR 220
Query: 261 D----LKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALY---- 312
W +PVP D YVW DA Y++ + D + +
Sbjct: 221 ARATLHNWAIPVPGN--PDHXVYVWLDALTNYLTGSR-LRVDESGKEVSLVDDFNELERF 277
Query: 313 ----QFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGN 368
+GKD FH + +P+ LL L K I + + K SKS G
Sbjct: 278 PADVHVIGKDILKFHAIYWPAFLLSA--GLPLPKKIVAHGWWTKDRKKISKSLGNVFDPV 335
Query: 369 DVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPP 428
+ + + +Y+L+ D ++ ++ A+LN EL + LGN V R S
Sbjct: 336 EKAEE-FGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKIN-- 392
Query: 429 GRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAY 488
P A + L + I + +++ + + NAY
Sbjct: 393 ---VNGEWPSP--AAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAY 447
Query: 489 LQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSL 548
+ + WKL D V+ ++ V + LL P +P S+ + L VP + +
Sbjct: 448 VTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHRKGI 507
Query: 549 SDENGDLERARKPWEILPAGHRIGMS---SPLFK--ELKDE 584
+ + +P G R+G + LF ++
Sbjct: 508 ENFE---------FGAVPPGTRLGPAVEGEVLFSKRSTENT 539
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 69.6 bits (170), Expect = 2e-12
Identities = 69/397 (17%), Positives = 132/397 (33%), Gaps = 79/397 (19%)
Query: 192 ELKDPRCKVCQATPKIRDTDHLFLEL--PLIKDKLEEYINKMSVSGSWSQNAIQGTYAWL 249
K+ + D F++ P K+K + + +M + + + WL
Sbjct: 444 AEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWL 503
Query: 250 KDGLKPRCITRDLKWGVPVPH------EKFKDKVFYVWFDAPIGYIS------------- 290
+ R + G P+P E D Y+ + +I+
Sbjct: 504 DK----KACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKL 559
Query: 291 ---------ITSCYTPDWEEWWKN---PENVALYQFM-------------GKDNAPFH-- 323
+ +E K P + GKD P H
Sbjct: 560 TPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLT 619
Query: 324 TVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYY 383
+F + EE+W K I+V + E K SKSKG + D + N A+V R Y
Sbjct: 620 FFIFNHVAIFREEHW--PKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEEN-GADVVRLY 676
Query: 384 LITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKAD 443
+++ SD + ++ + L + R I++ +
Sbjct: 677 IMSLAEHDSDFDWRRKE---------VGKLRKQIERFYELISQFAEYE------VKGNVE 721
Query: 444 LHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIG-MSISSEGNAYLQESQFWKLYNEDQ 502
L + + +++ I + A+E+ + + ++ SI ++ YL+ + D
Sbjct: 722 LKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRT-----EGRDD 776
Query: 503 GSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLN 539
+ V+RT L + L+ PF P E+ ++L
Sbjct: 777 EAKRYVLRT---LADVWVRLMAPFTPHICEELWEKLG 810
Score = 53.8 bits (129), Expect = 1e-07
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 4/125 (3%)
Query: 22 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATET 81
P ++ IT A PY++ H+G+ + DV AR+ R++GYN L+ G+
Sbjct: 31 PKEKKFYITVAFPYLSGHLHVGHARTYTI-PDVIARFKRMQGYNVLFPMAWHITGSPIVG 89
Query: 82 KAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKL-LENNWL 140
A + Y ++K + E + + F + +W
Sbjct: 90 IAERIKNRDPKTIWIYRDVYKVPEEI--LWTFEDPINIVKYFMKAAKETFIRAGFSVDWS 147
Query: 141 SEYTT 145
E+ T
Sbjct: 148 REFYT 152
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.7 bits (154), Expect = 1e-10
Identities = 81/558 (14%), Positives = 158/558 (28%), Gaps = 206/558 (36%)
Query: 174 DSARGDQCEKCGKLLN---PTELKDPRCKVCQATPKI----RDTDHLFLE---------- 216
D G+ + +L+ + + CK Q PK + DH+ +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 217 LPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCI-----------TRDLKWG 265
+ K EE + + V N Y +L +K RD +
Sbjct: 68 FWTLLSKQEE-MVQKFVEEVLRIN-----YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 266 VPVPHEKF------------------------------------------KDKVFYVWFD 283
K+ D
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 284 APIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKT 343
I ++++ +C +P E + + + LYQ + NWT
Sbjct: 182 FKIFWLNLKNCNSP--ETVLEMLQKL-LYQI--------------------DPNWTSRSD 218
Query: 344 ISVTEYLNYEAGK-----FSKSKGVGVFGN------DVKDTNIPAEVWRYY------LIT 386
S L + + KSK + N +V++ A+ W + L+T
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSK---PYENCLLVLLNVQN----AKAWNAFNLSCKILLT 271
Query: 387 NR-PEVSDTL-------FTWEDFQAKLNT-ELLNNLGNFVNRVLSFIAKPPGRGYGSIIP 437
R +V+D L + + L E+ + L +++
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD---------------CRPQ 316
Query: 438 DSPK--ADLHP-STKMLAEKISNHID--QYIEAMEKVKLKQGLRIGMSISSEGNAYLQES 492
D P+ +P ++AE I + + + + KL I S++ L+ +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT--IIESSLNV-----LEPA 369
Query: 493 QFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLE-VLKQLNVPTETKFSLSDE 551
++ K+++ S+ S + +L L+ + + V+ +L+ K+SL ++
Sbjct: 370 EYRKMFDR----LSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-----KYSLVEK 419
Query: 552 NG--------DLE-RARKPWEILPAGHRI--------------GMSSP------------ 576
+ + E A HR + P
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 577 -LFKELKDEDVRFFREKF 593
L E + FR F
Sbjct: 480 HLKNIEHPERMTLFRMVF 497
Score = 61.4 bits (148), Expect = 6e-10
Identities = 73/421 (17%), Positives = 131/421 (31%), Gaps = 98/421 (23%)
Query: 26 NILITSALPYVNNVPHLGNIIGCVLSA-DVFARYCRLRGY-NALYICGTDEYGTATETKA 83
+L + + H NI + S R + + Y N L + A A
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLNVQNAKAWNA 261
Query: 84 MEENC----TTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNW 139
+C TT+ K + +IS D T TP + + ++ K +
Sbjct: 262 FNLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVK---SLLLK-----Y 310
Query: 140 LSEYTTQQLYCDTCKRF------LADRLVEGSCPTLGCNYDSARGDQC----EKCGKLLN 189
L Q L + +A+ + +G T N+ D+ E +L
Sbjct: 311 LDC-RPQDLPREVLTTNPRRLSIIAESIRDGLA-TWD-NWKHVNCDKLTTIIESSLNVLE 367
Query: 190 PTELKD--PRCKVCQATPKIRDTDHLFLEL---PLIKDKLEEYINKMSVSGSWSQNAIQG 244
P E + R V + I L L L +IK + +NK+ + +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHI--PTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 245 TYAWLKDGLKPRCITRDLKW---GVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEE 301
T + + I +LK H D Y +I + D ++
Sbjct: 425 TIS-IPS------IYLELKVKLENEYALHRSIVDH-----------Y-NIPKTF--DSDD 463
Query: 302 WWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTE--ENWTLMKTISVTEYLNYEAGKFSK 359
+ Y +G H L E E TL + + +L++ +F +
Sbjct: 464 LIPPYLDQYFYSHIG-----HH-------LKNIEHPERMTLFRMV----FLDF---RFLE 504
Query: 360 SK---------GVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELL 410
K G N ++ + ++ Y+ N P+ + DF K+ L+
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQL----KFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 411 N 411
Sbjct: 561 C 561
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 5e-10
Identities = 70/365 (19%), Positives = 116/365 (31%), Gaps = 126/365 (34%)
Query: 298 DWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVT-EYLNYEAGK 356
+ EW +NP N ++ + P + P L+G + VT + L + G+
Sbjct: 214 NILEWLENPSNTPDKDYL--LSIP---ISCP--LIGV----IQLAHYVVTAKLLGFTPGE 262
Query: 357 FSKS-KGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGN 415
KG + + A +D+ WE F ++
Sbjct: 263 LRSYLKGATGHSQGL----VTAVA---------IAETDS---WESF--------FVSVRK 298
Query: 416 FVNRVLSFI------AKPPGRGYGSIIPDSPKADLHPSTKMLAEKISN----HIDQYIEA 465
+ VL FI A P SI+ DS + + + ML+ ISN + Y+
Sbjct: 299 AI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS--ISNLTQEQVQDYVNK 355
Query: 466 MEKVKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVG----LVYLLAC 521
L G ++ IS L N G+ ++V+ G L L
Sbjct: 356 TNS-HLPAGKQV--EIS--------------LVN---GAKNLVV---SGPPQSLYGLNLT 392
Query: 522 LLEPFMPSFSLEVLKQLNVPTETKFSLSDENGDLERARKP---WEILPAG---HRIGMSS 575
L + PS L Q +P FS RK LP H S
Sbjct: 393 LRKAKAPS----GLDQSRIP----FS----------ERKLKFSNRFLPVASPFH-----S 429
Query: 576 PLFK---ELKDEDVRFFREKFAGSQ-----------AD-RAVQAEAEAKRLAEHLKKTKI 620
L +L ++D+ F +D R + ++R+ + + I
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI-SERIVDCI----I 484
Query: 621 SVPLN 625
+P+
Sbjct: 485 RLPVK 489
Score = 57.4 bits (138), Expect = 1e-08
Identities = 80/542 (14%), Positives = 139/542 (25%), Gaps = 246/542 (45%)
Query: 61 LRGYNALYICGTDEYGTATETKAMEENC--TTQQICDKYY----------------AIHK 102
L + Y+ G D + A + + T+++ Y A+ +
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 103 AV-------YNWF----NIS--FDE---FGRTSTPQQTEICQAIFKKLLE---------- 136
AV F N F+E +T ++ + + L E
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 137 --------NNWLSEYTTQ--QLYCDTCKRFLADRLVEGSCPTLG----CNYDSARGDQCE 182
WL + + Y L + SCP +G +Y +
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDY-------LLSIPI--SCPLIGVIQLAHYVVT----AK 254
Query: 183 KCGKLLNPTELKDP------------------------------------------RCKV 200
G P EL+ RC
Sbjct: 255 LLG--FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY- 311
Query: 201 CQATPKIRDTDHLFLELPLIKDKLEEYINK---M-SVSG---SWSQNAIQGT-------- 245
+A P + L +++D LE M S+S Q+ + T
Sbjct: 312 -EAYP------NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 246 --YAWLKDGLKPRC--IT---RDL--------KWGVP-------VPHEKFKDKVFYVWFD 283
L +G + ++ + L K P +P + K F F
Sbjct: 365 QVEISLVNG--AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK-LKFSNRFL 421
Query: 284 APIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKT 343
P+ +PFH+ L+ +
Sbjct: 422 -PVA--------------------------------SPFHS----HLLVPASD------- 437
Query: 344 ISVTEYLNYEAGKFSKSK-GVGVF----GNDVK--DTNIPAEVWRYYLITNRPEVSDTLF 396
+ + L F+ + V+ G+D++ +I + I P V
Sbjct: 438 -LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD--CIIRLP-VK---- 489
Query: 397 TWE---DFQAKLNTELL-------NNLGNFVNRVLSFIAKPPGRGYGSIIPDS----PKA 442
WE F+A T +L + LG +R G G I+ + P
Sbjct: 490 -WETTTQFKA---THILDFGPGGASGLGVLTHRNKD------GTGVRVIVAGTLDINPDD 539
Query: 443 DL 444
D
Sbjct: 540 DY 541
Score = 38.1 bits (88), Expect = 0.011
Identities = 29/223 (13%), Positives = 59/223 (26%), Gaps = 81/223 (36%)
Query: 375 IPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGS 434
+P + L E F L P G+ +
Sbjct: 22 VPTASFFIA---------SQL--QEQFNKILPE--------------------PTEGFAA 50
Query: 435 IIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQGLRIGMSISSEGNAYLQESQF 494
D P L K ++ +E + + Q L + + + E+ +
Sbjct: 51 --DDEPTTPAE-----LVGKFLGYVSSLVEPSKVGQFDQVLNLCL------TEF--ENCY 95
Query: 495 WKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGD 554
L D ++ LA L + ++K + + +
Sbjct: 96 --LEGND--------------IHALAAKLLQENDT---TLVKTKEL-IKNYITA------ 129
Query: 555 LERARKPWEILPAGHRIGMSSPLFKELKDEDVRFFREKFAGSQ 597
A++P +S LF+ + + + + F G Q
Sbjct: 130 RIMAKRP---FDKKS----NSALFRAVGEGNAQLVAI-FGG-Q 163
Score = 31.9 bits (72), Expect = 0.84
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 8/38 (21%)
Query: 569 HRIGM------SSPLFKELKDE-DVRFFREKFAGSQAD 599
GM +S +++ + D F++ + S D
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRAD-NHFKDTYGFSILD 1663
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 54.6 bits (131), Expect = 8e-08
Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 12/129 (9%)
Query: 22 PGKRNILITSALPYVNNVPHLG----NIIGCVLSADVFARYCRLRGYNALYICGTDEYGT 77
P ++ IT A PY++ H+G I DV AR+ R++GYN L+ G+
Sbjct: 31 PKEKKFYITVAFPYLSGHLHVGHARTYTIP-----DVIARFKRMQGYNVLFPMAWHITGS 85
Query: 78 ATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKL-LE 136
A + Y ++K + E + + F +
Sbjct: 86 PIVGIAERIKNRDPKTIWIYRDVYKVPEEI--LWTFEDPINIVKYFMKAAKETFIRAGFS 143
Query: 137 NNWLSEYTT 145
+W E+ T
Sbjct: 144 VDWSREFYT 152
Score = 52.7 bits (126), Expect = 3e-07
Identities = 69/381 (18%), Positives = 129/381 (33%), Gaps = 77/381 (20%)
Query: 205 PKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKW 264
I D + P K+K + + +M + + + WL + R +
Sbjct: 459 KIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDK----KACARKIGL 514
Query: 265 GVPVPH------EKFKDKVFYVWF----------------------DAPIGYISITSCYT 296
G P+P E D Y+ + YI +
Sbjct: 515 GTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSE 574
Query: 297 PDWEEWWKN----PENVALY-----QFM-------GKDNAPFH--TVMFPSTLLGTEENW 338
+E K E + + GKD P H +F + EE+W
Sbjct: 575 DKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHW 634
Query: 339 TLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTW 398
K I+V + E K SKSKG + D + N A+V R Y+++ SD +
Sbjct: 635 --PKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEEN-GADVVRLYIMSLAEHDSDFDWRR 691
Query: 399 EDFQAKLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNH 458
++ + L + R I++ +L + + +++
Sbjct: 692 KE---------VGKLRKQIERFYELISQFAEYE------VKGNVELKDIDRWMLHRLNKA 736
Query: 459 IDQYIEAMEKVKLKQGLRIG-MSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVY 517
I + A+E+ + + ++ SI ++ YL+ ++ D + V+RT L
Sbjct: 737 IKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTE-----GRDDEAKRYVLRT---LAD 788
Query: 518 LLACLLEPFMPSFSLEVLKQL 538
+ L+ PF P E+ ++L
Sbjct: 789 VWVRLMAPFTPHICEELWEKL 809
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus
thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1
PDB: 1ivs_A* 1iyw_A
Length = 862
Score = 42.9 bits (102), Expect = 3e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 53 DVFARYCRLRGYNALYICGTDEYGTATETK 82
D RY R+RG+ A+++ GTD G AT+
Sbjct: 61 DALIRYKRMRGFEAVWLPGTDHAGIATQVV 90
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 35.4 bits (81), Expect = 0.031
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 13/41 (31%)
Query: 157 LADRLVEGSCPTLGCN-------YDSARGDQ-CEKCGKLLN 189
L L CP C + GD C CG +L+
Sbjct: 18 LNIVLT---CPE--CKVYPPKIVERFSEGDVVCALCGLVLS 53
Score = 29.6 bits (66), Expect = 2.5
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 111 SFDEFGRTSTPQQTEI-----CQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLV-EG 164
S D+ P + C+ K++E ++ + C C L+D+LV
Sbjct: 6 SIDKRAGRRGPNLNIVLTCPECKVYPPKIVE-----RFSEGDVVCALCGLVLSDKLVDTR 60
Query: 165 S 165
S
Sbjct: 61 S 61
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase,
riken structural genomics/proteom initiative, RSGI,
structural genomics; 2.50A {Thermus thermophilus} SCOP:
a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 36.0 bits (84), Expect = 0.046
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTD 73
P N +PH+G+ D+F RY +RGY A G D
Sbjct: 47 PTANGLPHVGHAQARSYK-DLFPRYKTMRGYYAPRRAGWD 85
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 32.9 bits (76), Expect = 0.31
Identities = 31/134 (23%), Positives = 45/134 (33%), Gaps = 54/134 (40%)
Query: 53 DVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNI-- 110
DV AR+ R++GY L+ G D +G E A++ +H + + NI
Sbjct: 60 DVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFG------------VHPKDWTYANIRQ 107
Query: 111 ----------SFD---EFGRTSTP---QQTEICQAIFKKLLEN----------NWLSEYT 144
+D E T P + Q IF K+ E NW
Sbjct: 108 AKESLRLMGILYDWDREV-TTCEPEYYRWN---QWIFLKMWEKGLAYRAKGLVNW----- 158
Query: 145 TQQLYCDTCKRFLA 158
C C+ LA
Sbjct: 159 -----CPKCQTVLA 167
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 32.6 bits (75), Expect = 0.36
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALY------ICGTDEYGTATETK----A 83
P V N H+GN + D+ + R GY Y I E K A
Sbjct: 50 PTVYNYAHIGNFRTYI-FGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTA 108
Query: 84 MEENCTTQQICDKY 97
E+ T +I + +
Sbjct: 109 REKGLTVYEISEFF 122
Score = 28.4 bits (64), Expect = 8.0
Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 20/124 (16%)
Query: 347 TEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITN--RPEVSDTLFTWEDF-QA 403
E+L + K SKS+G + D++D N +RY +T+ R ++ F+ ++ +
Sbjct: 290 GEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLK---FSLDNLQAS 346
Query: 404 KLNTELLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYI 463
K+ NL N ++ Y S+ P + D ++
Sbjct: 347 KIA---RENLINKLSYF-----------YESLDPVDLNTLNKDLKNFGFSVEKEYYDSFV 392
Query: 464 EAME 467
E +
Sbjct: 393 EKIS 396
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 32.9 bits (76), Expect = 0.37
Identities = 31/134 (23%), Positives = 42/134 (31%), Gaps = 54/134 (40%)
Query: 53 DVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQICDKYYAIHKAVYNWFNI-- 110
DV ARY R+ G N L G D +G E A++ N A + + NI
Sbjct: 80 DVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNN------------TAPAPWTYDNIAY 127
Query: 111 ----------SFD---EFGRTSTP---QQTEICQAIFKKLLEN----------NWLSEYT 144
+D E T TP + Q F +L + NW
Sbjct: 128 MKNQLKMLGFGYDWSREL-ATCTPEYYRWE---QKFFTELYKKGLVYKKTSAVNW----- 178
Query: 145 TQQLYCDTCKRFLA 158
C + LA
Sbjct: 179 -----CPNDQTVLA 187
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.48
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 18/47 (38%)
Query: 467 EKVKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSV 513
EK LK+ LQ S KLY +D ++ I+ ++
Sbjct: 18 EKQALKK---------------LQAS--LKLYADDSAP-ALAIKATM 46
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase;
2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Length = 168
Score = 31.4 bits (72), Expect = 0.53
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Query: 20 PVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTAT 79
P+P + N+++T NN +++ S ++ +GY + + G G
Sbjct: 54 PLPERLNVVLTRRPKTSNN----PSLVFFNGSPADVVKFLEGKGYERVAVIG----GKTV 105
Query: 80 ETKAMEENCTTQQICDKYY 98
T+ + E + D+ +
Sbjct: 106 FTEFLREK-----LVDELF 119
>3rlf_G Maltose transport system permease protein MALG; integral membrane
protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 3fh6_G 2r6g_G* 3puv_G* 3pux_G* 3puy_G*
3puz_G* 3pv0_G* 3puw_G*
Length = 296
Score = 30.0 bits (68), Expect = 2.1
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 309 VALYQFMGKDNAPFHTVMFPSTLLGTEENWTL 340
V + F+ V S LL ++TL
Sbjct: 218 VFILSFIA----AITEVPVASLLLRDVNSYTL 245
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 30.2 bits (69), Expect = 2.1
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 23/75 (30%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALY-----------ICGTDEYGTATETK 82
V ++ H+G+ V + DV ARY R GY Y I +
Sbjct: 30 ITVYDLCHIGHGRTFV-AFDVVARYLRFLGYKLKYVRNITDIDDKII-----------KR 77
Query: 83 AMEENCTTQQICDKY 97
A E + + D+
Sbjct: 78 ANENGESFVAMVDRM 92
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 29.8 bits (68), Expect = 2.8
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICG-TDEYGTATETK----AMEENC 88
V + H+G+ + D+ RY R+RGY ++ TD + K A E
Sbjct: 33 MTVYDYMHIGHGRSWI-IFDMVVRYLRMRGYEVTFVRNITD-----IDDKIIKRAGENKE 86
Query: 89 TTQQICDKY 97
+ + +++
Sbjct: 87 SPAALAERF 95
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 29.1 bits (66), Expect = 4.5
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 349 YLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386
+ ++ K SKS+G V + ++ + R L +
Sbjct: 284 MIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFS 321
Score = 28.4 bits (64), Expect = 8.2
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYI 69
PY + HLG+ + + D+ R G+ Y+
Sbjct: 49 PY--DATHLGHAATYL-TFDLVHRLWLDAGHTVQYV 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.421
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,734,719
Number of extensions: 589038
Number of successful extensions: 1527
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1447
Number of HSP's successfully gapped: 52
Length of query: 625
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 526
Effective length of database: 3,937,614
Effective search space: 2071184964
Effective search space used: 2071184964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)