RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 006917
(625 letters)
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 230 bits (588), Expect = 8e-71
Identities = 110/394 (27%), Positives = 176/394 (44%), Gaps = 53/394 (13%)
Query: 25 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAM 84
+ IL+T ALPY N HLG+++ + ADV+ RY R+RG+ +IC D +GT KA
Sbjct: 2 KKILVTCALPYANGSIHLGHMLEHIQ-ADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 60
Query: 85 EENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYT 144
+ T +Q+ + H+ + FNIS+D + T + + ++ + I+ +L EN ++ T
Sbjct: 61 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 120
Query: 145 TQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQAT 204
QLY FL DR V V AT
Sbjct: 121 ISQLYDPEKGMFLPDRFV-------------------------------------VSGAT 143
Query: 205 PKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKW 264
P +RD++H F +LP + L+ + SG+ + W + GL+ I+RD +
Sbjct: 144 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 199
Query: 265 GVPVPHEKFKDKVFYVWFDAPIGYISITS------CYTPDWEEWWKNPENVALYQFMGKD 318
K FYVW DAPIGY+ + ++E+WK LY F+GKD
Sbjct: 200 -FGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKD 258
Query: 319 NAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAE 378
FH++ +P+ L G+ N+ + V Y+ K SKS+G + + + A+
Sbjct: 259 IVYFHSLFWPAMLEGS--NFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-FDAD 315
Query: 379 VWRYYLITN-RPEVSDTLFTWEDFQAKLNTELLN 411
RYY + D EDF ++N +++N
Sbjct: 316 SLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVN 349
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 221 bits (562), Expect = 5e-67
Identities = 136/400 (34%), Positives = 202/400 (50%), Gaps = 59/400 (14%)
Query: 27 ILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEE 86
++TSALPY N H G++ G L AD+F RY RL+G + ++ICGTDE+GT +A++E
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE 63
Query: 87 NCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQ 146
+ ++I D+++ K + ISFD FGRT P ++ Q F K EN L + T+
Sbjct: 64 GRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTK 123
Query: 147 QLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPK 206
Q YC+ K F R +C
Sbjct: 124 QAYCEHDKMF-------------------------------------LPDRFAICGRPIS 146
Query: 207 IRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGV 266
RD+ H ++++ ++L+ +I K W N +W+++GL+ R ITRDL WG+
Sbjct: 147 FRDSAHYYIKMQDFAERLKRWIEKQ----PWKPNVKNMVLSWIEEGLEERAITRDLNWGI 202
Query: 267 PVP--HEKFKDKVFYVWFDAPIGYISITSCYTP------DWEEWWKNPE-NVALYQFMGK 317
PVP E K KV YVWF+APIGYISIT + +W+++W N + + F+GK
Sbjct: 203 PVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGK 262
Query: 318 DNAPFHTVMFPSTLLG--------TEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGND 369
DN PFH + +P+ L+ E W L I EYL E KFS S+ ++ ++
Sbjct: 263 DNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHE 322
Query: 370 VKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLNTEL 409
D PA+ RYYL T PE D+ F++ DF+ ++N EL
Sbjct: 323 FLDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEEL 361
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 179 bits (453), Expect = 2e-51
Identities = 75/386 (19%), Positives = 144/386 (37%), Gaps = 40/386 (10%)
Query: 24 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKA 83
++ +T+ + YVN PHLG+ V+ AD AR+ RL GY ++ GTDE+G A
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAA 60
Query: 84 MEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEY 143
+ D+ K ++ I++D+F RT+ + ++ Q + KK+ E +
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYG 120
Query: 144 TTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQA 203
+ LYC +C+RF ++ + C ++ ++ + + + Q
Sbjct: 121 EYEGLYCVSCERFYTEKELVEGL----CPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQE 176
Query: 204 TPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLK 263
P + + +N + A L +
Sbjct: 177 NPDLIRPE-------------------------GYRNEVLAMLAEPIGDLSISRPKSRVP 211
Query: 264 WGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFH 323
WG+P+P + ++ V +VWFDA + Y+S P+ E + +
Sbjct: 212 WGIPLPWD--ENHVTFVWFDALLNYVSALDY--PEGEAYRTFWPHAWHLIGKDILKPHAV 267
Query: 324 TVMFPSTLLGTEENWTLMKTISVT-EYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRY 382
+ + + ++V L + K SK+ G V + + + RY
Sbjct: 268 FWPT----MLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLE-KYGRDALRY 322
Query: 383 YLITNRPEVSDTLFTWEDFQAKLNTE 408
YL+ P DT + E + + +
Sbjct: 323 YLLREIPYGQDTPVSEEALRTRYEAD 348
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 145 bits (367), Expect = 1e-38
Identities = 69/431 (16%), Positives = 125/431 (29%), Gaps = 68/431 (15%)
Query: 22 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATET 81
G + P N +PH+G+ D+F RY +RGY A G D +G E
Sbjct: 35 KGGPRYTVYEGPPTANGLPHVGHAQARSY-KDLFPRYKTMRGYYAPRRAGWDTHGLPVEL 93
Query: 82 KAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLS 141
+ + I FN + E T + + I +
Sbjct: 94 EVE-----KKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYW---VDLED 145
Query: 142 EYT-TQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKV 200
Y + Y ++ L + G ++ + L P C
Sbjct: 146 AYATLEPTYIESIWWSLKNLFDRGLLY---RDHKVVPYCPRCGTPLSSHEVALGYPHCWR 202
Query: 201 CQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCITR 260
C T+ F++ L KD+L ++ + G Y L ++R
Sbjct: 203 CSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKE---GRYGEWLKNLVDWALSR 259
Query: 261 DLKWGVPVPHEKFKD--------------------------------------------- 275
+ WG P+P +
Sbjct: 260 NRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTM 319
Query: 276 ----KVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVMFPSTL 331
V VW+D+ + E + ++ + + + + F+++ +
Sbjct: 320 RRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVM 379
Query: 332 LGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEV 391
L + I L+ + K SKSKG V D+ A+ R+Y+ + P
Sbjct: 380 LFGSIAFK--NVICHGLILDEKGQKMSKSKGNVVDPWDIIR-KFGADALRWYIYVSAPPE 436
Query: 392 SDTLFTWEDFQ 402
+D F +
Sbjct: 437 ADRRFGPNLVR 447
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 143 bits (362), Expect = 5e-38
Identities = 62/407 (15%), Positives = 115/407 (28%), Gaps = 31/407 (7%)
Query: 20 PVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTAT 79
P GK +I P V H+G+ + L D RY R+RG+ A+++ GTD G AT
Sbjct: 29 PKSGKPPFVIFMPPPNVTGSLHMGHALDNSL-QDALIRYKRMRGFEAVWLPGTDHAGIAT 87
Query: 80 ETKAME----ENCTTQQICDKYYAIHKAVYNWFNIS--------------FDEFGRTSTP 121
+ E T + + + + + + T
Sbjct: 88 QVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDE 147
Query: 122 QQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQC 181
+++ + F + +C C+ L+D VE G + A Q
Sbjct: 148 KRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETCSRC-GTPIEYAIFPQW 206
Query: 182 EKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNA 241
L + K + + + ++++ + A
Sbjct: 207 WLRM-----RPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPA 261
Query: 242 I--QGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDW 299
+ A + P K + VF WF + + +S
Sbjct: 262 WYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETE 321
Query: 300 EEWWKNPENVALYQFMGKDNAPFHTVMFPSTLLGTEENWTLMKTISVTEYLNYEAGKFSK 359
+ P + G D + + L+ + K SK
Sbjct: 322 DLKAFYPGD---VLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSK 378
Query: 360 SKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQAKLN 406
SKG + ++ + A+ R+ LI D + N
Sbjct: 379 SKGNVIDPLEMVE-RYGADALRFALIYLATGGQDIRLDLRWLEMARN 424
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 114 bits (285), Expect = 2e-27
Identities = 54/334 (16%), Positives = 97/334 (29%), Gaps = 26/334 (7%)
Query: 17 AKLPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYG 76
AK G+ + PY + H+G++ + DV AR+ R++GY L+ G D +G
Sbjct: 25 AKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTM-GDVLARFRRMQGYEVLHPMGWDAFG 83
Query: 77 TATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDE--FGRTSTPQQTEICQAIFKKL 134
E A++ + K I +D T P+ Q IF K+
Sbjct: 84 LPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKM 143
Query: 135 LENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELK 194
E +C C+ LA+ V + + + + ++ E
Sbjct: 144 WEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERL 203
Query: 195 DPRCKVCQATPK----------------IRDTDHLFLELPLIKDKLEEYINKMSVSGSWS 238
+ K I + +P++ + +
Sbjct: 204 LKDLEGLNWPEKVKAMQRAWIGRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVL 263
Query: 239 QNAIQGTYAWLKDGLKP------RCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISIT 292
++ G P T K G P + F+ + Y
Sbjct: 264 LPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPH 323
Query: 293 SCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVM 326
+ P E V Y G ++A H +
Sbjct: 324 NDRLPFDPEKANAWMPVDQY-IGGVEHAVLHLLY 356
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 105 bits (261), Expect = 1e-24
Identities = 60/415 (14%), Positives = 125/415 (30%), Gaps = 48/415 (11%)
Query: 22 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATET 81
G ++ PY N H+G+ + +L D RY ++G+ A Y+ G D +G E
Sbjct: 45 KGNETFILHDGPPYANGNLHMGHALNKIL-KDFIVRYKTMQGFYAPYVPGWDTHGLPIEQ 103
Query: 82 KAMEENCTTQQICDKYYAIHKAVYNWFNIS--------------FDEFGRTSTPQQTEIC 127
++ +++ + + I F++ T P+
Sbjct: 104 ALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQ 163
Query: 128 QAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARG-DQCEKCGK 186
IF ++ + + + + + + LA+ +E R Q
Sbjct: 164 IRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQWFASIS 223
Query: 187 LLNPTELKDPRCKVCQATPKIRDTDHLFLELP----------------LIKDKLEEYINK 230
+ L + ++ + + E + K
Sbjct: 224 KVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTK 283
Query: 231 MSVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWFDAPIGYIS 290
+V+ A G+ W + K G P + + VWFD+ +
Sbjct: 284 ETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSH-- 341
Query: 291 ITSCYTPDWEEWWKNPENVALYQFMGKDNA--PFHTVMFPSTLLGTEENWTLMKTISVTE 348
+ P A G D F++ + S + K +
Sbjct: 342 ---RGVLETRPELSFP---ADMYLEGSDQYRGWFNSSITTSVATRGVSPY---KFLLSHG 392
Query: 349 Y-LNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLITNRPEVSDTLFTWEDFQ 402
+ ++ E K SKS G + + V A++ R ++ + +D + E +
Sbjct: 393 FVMDGEGKKMSKSLGNVIVPDQVVKQK-GADIARLWVSSTDYL-ADVRISDEILK 445
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS)
{Pyrococcus abyssi [TaxId: 29292]}
Length = 210
Score = 93.4 bits (231), Expect = 2e-22
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 20/197 (10%)
Query: 411 NNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVK 470
NNLGNFV+R L+F+ + + ++P+ + +L + E+I + E + +
Sbjct: 2 NNLGNFVHRALTFVNR----YFDGVVPE--RGELDELDREALEEIEKAFKEVGELIMNYR 55
Query: 471 LKQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMPSF 530
K L+ MS++S GN Y Q WK ED+ + S+ +V L LLEPF+P
Sbjct: 56 FKDALKRVMSLASFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDA 115
Query: 531 SLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPLFKELKDEDVRFFR 590
S ++ LN+ ++ + LPAGH++ LFK++ D+ + +F
Sbjct: 116 SEKIWHLLNLDEVKRWE--------------FRELPAGHKVRKPEILFKKVTDDQIIYFI 161
Query: 591 EKFAGSQADRAVQAEAE 607
+ + +
Sbjct: 162 LNYMAKGNPEGARILLD 178
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 89.9 bits (222), Expect = 1e-21
Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 21/171 (12%)
Query: 409 LLNNLGNFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEK 468
L ++LGN V R + + + IP+ P + + + + +
Sbjct: 1 LADDLGNLVQRTRAMLFR----FAEGRIPE-------PVAGEELAEGTGLAGRLRPLVRE 49
Query: 469 VKLKQGLRIGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVYLLACLLEPFMP 528
+K L M+ N Y+ E + W+L+ ++ V+ V + + + LL P MP
Sbjct: 50 LKFHVALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMP 109
Query: 529 SFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPLFK 579
E+ + L + E + ++ W + + LF
Sbjct: 110 DKMAELRRALGLKEEVRLEEAER----------WGLAEPRPIPEEAPVLFP 150
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS)
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 78.6 bits (193), Expect = 1e-17
Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 27/180 (15%)
Query: 415 NFVNRVLSFIAKPPGRGYGSIIPDSPKADLHPSTKMLAEKISNHIDQYIEAMEKVKLKQG 474
N +R FI K + ++ S AD L + ++ + EA E + +
Sbjct: 3 NLASRNAGFINK----RFDGVLA-SELAD-----PQLYKTFTDAAEVIGEAWESREFGKA 52
Query: 475 LRIGMSISSEGNAYLQESQFWKLYNED--QGSCSIVIRTSVGLVYLLACLLEPFMPSFSL 532
+R M+++ N Y+ E W + ++ + + L +L L+P +P +
Sbjct: 53 VREIMALADLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTE 112
Query: 533 EVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHRIGMSSPLFKELKDEDVRFFREK 592
LN + GH++ L+ + V E
Sbjct: 113 RAEAFLNTELTWDG---------------IQQPLLGHKVNPFKALYNRIDMRQVEALVEA 157
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 80.6 bits (197), Expect = 3e-17
Identities = 36/374 (9%), Positives = 90/374 (24%), Gaps = 76/374 (20%)
Query: 19 LPVPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTA 78
+ G++ + + + H+GN + +A + R +GY +I D+Y
Sbjct: 11 IRERGEKEKYVVESGITPSGYVHVGNF-RELFTAYIVGHALRDKGYEVRHIHMWDDYDRF 69
Query: 79 TETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENN 138
+ + + + + ++ E ++
Sbjct: 70 RKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFM------RKFEEEVEKLGIEVDLL 123
Query: 139 WLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRC 198
+ SE + Y + + R + + + P + P
Sbjct: 124 YASELYKRGEYSEEIRLAFEKR-----DKIMEILNKYREIAKQPPLPENWWPAMVYCPEH 178
Query: 199 KVCQATPKIRDTDHLFLELPLIKDKLEEYINKMSVSGSWSQNAIQGTYAWLKDGLKPRCI 258
+ + +
Sbjct: 179 RREAEIIEWDGGWK-----------------------------------VKYKCPEGHEG 203
Query: 259 TRDLKWGVPVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKD 318
D++ G + + + F + GKD
Sbjct: 204 WVDIRSGNVKLRWRVDWPMRWSHFGVDF--------------------------EPAGKD 237
Query: 319 NAPFHTVMFPSTLLGTEENWTLMKTISVTEYL--NYEAGKFSKSKGVGVFGNDVKDTNIP 376
+ + + E + E++ + GK S SKG + +D+ + +
Sbjct: 238 HLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYE-VLE 296
Query: 377 AEVWRYYLITNRPE 390
+ R+ +RP
Sbjct: 297 PGLVRFIYARHRPN 310
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS),
Zn-domain {Pyrococcus abyssi [TaxId: 29292]}
Length = 35
Score = 65.0 bits (159), Expect = 2e-14
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 162 VEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRC 198
V G+CP C + +GDQCE CG+ L P L +PRC
Sbjct: 1 VIGTCPY--CGAEDQKGDQCEVCGRPLTPEILINPRC 35
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS),
Zn-domain {Escherichia coli [TaxId: 562]}
Length = 35
Score = 57.4 bits (139), Expect = 9e-12
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 162 VEGSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPR 197
V+G+CP C GD CE CG +PTEL +P+
Sbjct: 1 VKGTCPK--CKSPDQYGDNCEVCGATYSPTELIEPK 34
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 55.7 bits (133), Expect = 6e-09
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 2/121 (1%)
Query: 34 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGTATETKAMEENCTTQQI 93
V ++ H+G+ V + DV ARY R GY Y+ + +A E + +
Sbjct: 30 ITVYDLCHIGHGRTFV-AFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAM 88
Query: 94 CDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTC 153
D+ A ++ NI + +T E + ++L+ + D
Sbjct: 89 VDRMIAEMHKDFDALNILRPDMEPRATHHIAE-IIELTEQLIAKGHAYVADNGDVMFDVP 147
Query: 154 K 154
Sbjct: 148 T 148
Score = 42.6 bits (99), Expect = 9e-05
Identities = 21/137 (15%), Positives = 37/137 (27%), Gaps = 3/137 (2%)
Query: 267 PVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVM 326
P+ +K + K N G D H
Sbjct: 178 PMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHEN 237
Query: 327 FPSTLLGTEENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDVKDTNIPAEVWRYYLIT 386
+ + + + + + K SKS G DV AE RY+L++
Sbjct: 238 EIAQSTCAHDGQY-VNYWMHSGMVMVDREKMSKSLGNFFTVRDVLK-YYDAETVRYFLMS 295
Query: 387 NRPEVSDTLFTWEDFQA 403
S ++ E+ +
Sbjct: 296 GHYR-SQLNYSEENLKQ 311
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 28.5 bits (64), Expect = 0.22
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 181 CEKCGKLLNPTEL----KDPRCKVC 201
C KCGK L T L + CK C
Sbjct: 2 CAKCGKSLESTTLADKDGEIYCKGC 26
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 27.9 bits (62), Expect = 0.59
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 4/25 (16%)
Query: 181 CEKCGKLLNPTELKD----PRCKVC 201
C C K L+ T + CK C
Sbjct: 2 CMVCKKNLDSTTVAVHGDEIYCKSC 26
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter
succinogenes [TaxId: 833]}
Length = 243
Score = 30.0 bits (67), Expect = 0.75
Identities = 10/72 (13%), Positives = 22/72 (30%)
Query: 267 PVPHEKFKDKVFYVWFDAPIGYISITSCYTPDWEEWWKNPENVALYQFMGKDNAPFHTVM 326
+K +K V A + + +TP++ W + + V + N +
Sbjct: 77 KAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTEGGQVSNLTGTQGL 136
Query: 327 FPSTLLGTEENW 338
+ W
Sbjct: 137 RFNLWSSESAAW 148
>d1uz5a2 b.103.1.1 (A:5-180) Molybdenum cofactor biosynthesis
protein MoeA, N-terminal and linker domains {Archaeon
Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Length = 176
Score = 28.7 bits (63), Expect = 1.3
Identities = 20/177 (11%), Positives = 42/177 (23%), Gaps = 21/177 (11%)
Query: 19 LPVPGKRNILITSAL-PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYGT 77
+P+ ++ + + P + VP + +G + + D+++ A D Y
Sbjct: 3 VPLEKALEVVQSFKISPGIEEVP-IEKGLGRIAAEDIYSPIDVPPFDRATV----DGYAV 57
Query: 78 ATE-TKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLE 136
E T E + + + T I E
Sbjct: 58 RAEDTFMASEASPVRLKVIGSVHAGEEPKFKLGKGEAAYISTGAMLPGNADAVIQ---FE 114
Query: 137 NNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTEL 193
+ + D +G K G+ L +
Sbjct: 115 DVERVNGEILIYKPAYPGLGVMK-----------KGIDIEKGRLLVKKGERLGFKQT 160
>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 28.1 bits (62), Expect = 2.4
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 4/102 (3%)
Query: 460 DQYIEAMEKVKLKQGLR-IGMSISSEGNAYLQESQFWKLYNEDQGSCSIVIRTSVGLVY- 517
Y + + + + I S ++ Y+ + K N+ Q +
Sbjct: 65 PVYKSFLMSLCPRPEIDEIFTSYHAKAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPD 124
Query: 518 LLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENG--DLER 557
+ L++ + PS QL+ F EN ++
Sbjct: 125 QVQGLIDKYEPSGINAQRGQLSPEGMVWFLCGPENSVLAQDK 166
>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal
domain {Methylococcus capsulatus [TaxId: 414]}
Length = 98
Score = 26.9 bits (59), Expect = 3.1
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 164 GSCPTLGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPK----IR-DTDH 212
G C T D + L P E ++ +C+ PK I H
Sbjct: 45 GGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCRTYPKTDLEIELPYTH 98
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein,
CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
CRP2 [TaxId: 93934]}
Length = 31
Score = 25.0 bits (54), Expect = 3.2
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 180 QCEKCGKLLNPTELKDPR----CKVCQA 203
+C KCGK L T L + CK C A
Sbjct: 2 RCAKCGKSLESTTLTEKEGEIYCKGCYA 29
>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP,
CRIP {Rat (Rattus rattus) [TaxId: 10117]}
Length = 48
Score = 25.5 bits (56), Expect = 3.3
Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 5/26 (19%)
Query: 181 CEKCGKLLNPTELKD----PRC-KVC 201
CEKCGK L + P C C
Sbjct: 2 CEKCGKTLTSGGHAEHEGKPYCNHPC 27
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
Length = 314
Score = 27.8 bits (61), Expect = 3.9
Identities = 21/198 (10%), Positives = 55/198 (27%), Gaps = 11/198 (5%)
Query: 45 IIGCVLSADVFARYCRLRGYNALYICGTDEY-GTATETKAMEENCTTQQICDKYYAIHKA 103
I+G S V R +G+ I D G + + + E N +
Sbjct: 7 IVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNE 66
Query: 104 VYNWFNISFDEFGRTSTPQQTEICQAIFKKLLENNWLSEYTTQQLYCDTCKRFLADRLVE 163
+ E + + +F + + ++++ ++ D + +A++
Sbjct: 67 TVWNYVNKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPDEARALIAEKGDS 126
Query: 164 GSCPTLGCNYDSARGDQCEKCGKLLNP-------TELKDPRCKVCQATPKIRDTDHLFLE 216
++ R E + + + + P + D +
Sbjct: 127 TIADPQTFEEEALRFIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFN 186
Query: 217 LP---LIKDKLEEYINKM 231
+ K + I +
Sbjct: 187 HKFQGMPKCGYTQMIKSI 204
>d1wu2a2 b.103.1.1 (A:6-180) Molybdenum cofactor biosynthesis
protein MoeA, N-terminal and linker domains {Pyrococcus
horikoshii, PH1647 [TaxId: 53953]}
Length = 175
Score = 26.7 bits (58), Expect = 5.6
Identities = 24/177 (13%), Positives = 48/177 (27%), Gaps = 20/177 (11%)
Query: 19 LPVPGKRNILITSA--LPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNALYICGTDEYG 76
+P +L+ + VP L +G VL+ D+ + A
Sbjct: 3 VPYREALKLLLDDINEIEDTEKVP-LREAVGRVLAEDIVTEFDIPPFDRAAV-------- 53
Query: 77 TATETKAMEENCTTQQICDKYYAIHKAVYNWFNISFDEFGRTSTPQQTEICQAIFKKLLE 136
+ A+ T Q + E T + I K
Sbjct: 54 ---DGYAIRAEDTFQAREYNPIELTVIEEVPAGNVAKEEVTTGKAIKVLTGTRIPKGANA 110
Query: 137 NNWLSEYTTQQLYCDTCKRFLADRLVEGSCPTLGCNYDSARGDQCEKCGKLLNPTEL 193
+ + + K ++ + G D +G+ + G +L P ++
Sbjct: 111 -----VIMQEMVKREGDKIYVLRPVAPGQN-IAFTGEDVKKGEVVLRKGTILRPQDV 161
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 264
Score = 26.9 bits (59), Expect = 6.4
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 512 SVGLVYLLACLLEPFMPSFSLEVLKQLNVPTETKFSLSDENGD 554
+V ++Y L EPF P ++L + E S + D
Sbjct: 213 NVLIMYYLQYPFEPFFPESCKIECQKLGIDIEMLKSF-NVEKD 254
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 26.8 bits (58), Expect = 8.2
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 4/111 (3%)
Query: 172 NYDSARGDQCEKCGKLLNPTELKDPRCKVCQATPKIRDTDHLFLELPLIKDKLEEYINKM 231
+ G + + E K+ ++ + + D H L +P+ +D++ Y +
Sbjct: 119 TFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQ- 177
Query: 232 SVSGSWSQNAIQGTYAWLKDGLKPRCITRDLKWGVPVPHEKFKDKVFYVWF 282
G I + G WG VP + +W
Sbjct: 178 --PGQQLATWIVPPGQYFMMGDNRDNSADSRYWG-FVPEANLVGRATAIWM 225
>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 164
Score = 26.3 bits (57), Expect = 8.9
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 527 MPSFSLEVLKQLNVPTETKFSLSDENGDLERARKPWEILPAGHR-IGMSSPLFKELKDED 585
+ + + VP DEN ++ + G I + + + +
Sbjct: 100 KVTHFERLHHKTGVPFSQMVFFDDENRNIIDVGR------LGVTCIHIRDGMSLQTLTQG 153
Query: 586 VRFFREKFAG 595
+ F + AG
Sbjct: 154 LETFAKAQAG 163
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.421
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,445,556
Number of extensions: 122323
Number of successful extensions: 433
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 39
Length of query: 625
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 534
Effective length of database: 1,158,166
Effective search space: 618460644
Effective search space used: 618460644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)