Query 006920
Match_columns 625
No_of_seqs 425 out of 3191
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 16:23:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0234 Fructose-6-phosphate 2 100.0 3.7E-62 7.9E-67 516.4 35.3 399 219-625 24-431 (438)
2 PTZ00322 6-phosphofructo-2-kin 100.0 4.2E-61 9.1E-66 552.5 43.6 389 221-624 213-637 (664)
3 PF01591 6PF2K: 6-phosphofruct 100.0 2E-43 4.3E-48 352.3 18.2 207 220-431 9-222 (222)
4 PRK15004 alpha-ribazole phosph 100.0 1.7E-34 3.6E-39 285.6 20.6 188 432-623 1-195 (199)
5 PRK13463 phosphatase PhoE; Pro 100.0 1.5E-34 3.3E-39 286.9 20.3 189 431-623 2-198 (203)
6 PRK14116 gpmA phosphoglyceromu 100.0 2.1E-34 4.5E-39 290.9 18.9 188 431-620 1-225 (228)
7 PRK14117 gpmA phosphoglyceromu 100.0 9E-34 2E-38 286.6 20.4 190 431-622 1-227 (230)
8 PRK14119 gpmA phosphoglyceromu 100.0 6.6E-34 1.4E-38 287.3 19.0 189 431-621 1-226 (228)
9 PRK01112 phosphoglyceromutase; 100.0 1.4E-33 3E-38 284.7 19.8 186 431-620 1-224 (228)
10 PRK14118 gpmA phosphoglyceromu 100.0 4.1E-33 8.9E-38 281.3 19.4 181 432-614 1-218 (227)
11 TIGR03848 MSMEG_4193 probable 100.0 8.6E-33 1.9E-37 274.3 20.1 185 433-623 1-198 (204)
12 PRK03482 phosphoglycerate muta 100.0 1.4E-32 3E-37 275.0 21.3 188 431-622 1-200 (215)
13 PRK01295 phosphoglyceromutase; 100.0 9.3E-33 2E-37 274.7 19.7 182 431-614 2-195 (206)
14 PRK13462 acid phosphatase; Pro 100.0 1.6E-32 3.5E-37 272.4 20.9 185 428-623 2-193 (203)
15 PRK14115 gpmA phosphoglyceromu 100.0 2.1E-32 4.6E-37 279.2 21.8 192 432-625 1-229 (247)
16 PRK14120 gpmA phosphoglyceromu 100.0 2E-32 4.2E-37 279.6 20.4 184 429-614 2-220 (249)
17 COG0406 phoE Broad specificity 100.0 3.2E-32 6.9E-37 270.6 20.1 183 431-615 2-191 (208)
18 TIGR01258 pgm_1 phosphoglycera 100.0 4.5E-32 9.7E-37 276.5 21.1 190 432-623 1-227 (245)
19 TIGR03162 ribazole_cobC alpha- 100.0 1.9E-32 4.2E-37 265.0 17.4 170 434-609 1-177 (177)
20 PRK07238 bifunctional RNase H/ 100.0 2.9E-30 6.4E-35 278.8 21.9 190 430-623 170-367 (372)
21 PF00300 His_Phos_1: Histidine 100.0 4.4E-28 9.6E-33 228.2 12.1 150 433-584 1-158 (158)
22 PTZ00123 phosphoglycerate muta 99.9 4.6E-27 9.9E-32 238.6 19.3 179 444-624 1-216 (236)
23 smart00855 PGAM Phosphoglycera 99.9 3.3E-27 7.2E-32 223.7 14.1 146 433-584 1-155 (155)
24 KOG0235 Phosphoglycerate mutas 99.9 6E-27 1.3E-31 230.6 15.0 183 429-613 3-200 (214)
25 COG0588 GpmA Phosphoglycerate 99.9 2.9E-26 6.2E-31 221.6 13.5 184 431-616 1-221 (230)
26 PTZ00122 phosphoglycerate muta 99.9 1.3E-21 2.7E-26 204.9 16.1 167 432-622 103-286 (299)
27 cd07067 HP_PGM_like Histidine 99.9 1.3E-21 2.9E-26 184.3 13.9 135 433-613 1-143 (153)
28 cd07040 HP Histidine phosphata 99.8 1.4E-18 3E-23 162.8 14.3 132 433-613 1-143 (153)
29 COG0529 CysC Adenylylsulfate k 99.8 9.6E-18 2.1E-22 158.9 15.7 119 219-349 19-137 (197)
30 TIGR00249 sixA phosphohistidin 99.7 1.5E-16 3.4E-21 150.9 17.0 136 432-613 1-140 (152)
31 COG0645 Predicted kinase [Gene 99.7 5.5E-16 1.2E-20 146.7 16.4 148 223-391 1-149 (170)
32 PRK06193 hypothetical protein; 99.7 4.2E-16 9E-21 154.3 14.8 142 431-615 42-190 (206)
33 PRK10848 phosphohistidine phos 99.7 1.1E-15 2.4E-20 146.2 17.1 135 432-612 1-139 (159)
34 PF01583 APS_kinase: Adenylyls 99.7 2.8E-16 6.1E-21 148.9 12.5 117 222-350 1-117 (156)
35 COG2062 SixA Phosphohistidine 99.7 2.2E-15 4.7E-20 143.3 14.9 141 431-613 1-142 (163)
36 PF13671 AAA_33: AAA domain; P 99.6 3E-15 6.5E-20 139.1 13.7 118 225-354 1-119 (143)
37 KOG4754 Predicted phosphoglyce 99.6 2E-15 4.4E-20 145.8 12.0 166 431-596 14-208 (248)
38 PHA02530 pseT polynucleotide k 99.6 4E-14 8.6E-19 148.4 17.1 164 223-410 2-172 (300)
39 PRK05537 bifunctional sulfate 99.6 1.3E-14 2.8E-19 164.3 13.4 152 187-350 356-509 (568)
40 PRK15416 lipopolysaccharide co 99.6 4.1E-14 8.9E-19 139.1 13.9 122 427-591 50-173 (201)
41 KOG3734 Predicted phosphoglyce 99.5 3.7E-14 8E-19 144.1 12.2 164 428-594 9-219 (272)
42 COG0703 AroK Shikimate kinase 99.5 5E-14 1.1E-18 134.8 11.7 138 225-384 4-144 (172)
43 KOG4609 Predicted phosphoglyce 99.5 4.9E-14 1.1E-18 136.2 11.2 164 430-620 93-268 (284)
44 cd02021 GntK Gluconate kinase 99.5 2.2E-13 4.7E-18 128.2 13.7 142 225-398 1-149 (150)
45 TIGR01663 PNK-3'Pase polynucle 99.5 4E-13 8.8E-18 150.0 17.9 138 220-399 366-507 (526)
46 cd02027 APSK Adenosine 5'-phos 99.5 3.9E-13 8.5E-18 127.1 13.1 116 225-352 1-116 (149)
47 PRK06762 hypothetical protein; 99.5 1.2E-12 2.7E-17 125.2 14.8 114 223-353 2-116 (166)
48 KOG0635 Adenosine 5'-phosphosu 99.5 3.1E-13 6.7E-18 124.8 9.9 119 219-349 27-145 (207)
49 TIGR03574 selen_PSTK L-seryl-t 99.4 1.8E-12 4E-17 132.6 15.8 115 225-353 1-116 (249)
50 TIGR00455 apsK adenylylsulfate 99.4 4.1E-12 8.8E-17 124.0 13.7 119 220-350 15-133 (184)
51 COG4639 Predicted kinase [Gene 99.4 8.4E-12 1.8E-16 116.5 14.3 114 223-352 2-116 (168)
52 PF08433 KTI12: Chromatin asso 99.4 7.7E-12 1.7E-16 129.5 15.3 117 225-354 3-120 (270)
53 cd00227 CPT Chloramphenicol (C 99.4 7.4E-12 1.6E-16 121.3 13.0 125 223-353 2-131 (175)
54 COG4088 Predicted nucleotide k 99.4 6.7E-12 1.4E-16 121.9 12.4 148 225-398 3-155 (261)
55 PRK13948 shikimate kinase; Pro 99.4 1E-11 2.2E-16 121.3 13.9 140 220-383 7-150 (182)
56 PRK00889 adenylylsulfate kinas 99.4 1.1E-11 2.5E-16 119.8 14.0 116 221-350 2-117 (175)
57 TIGR01313 therm_gnt_kin carboh 99.3 8.8E-12 1.9E-16 119.0 12.3 108 226-353 1-114 (163)
58 PRK03846 adenylylsulfate kinas 99.3 1.8E-11 3.8E-16 121.1 14.1 118 219-349 20-138 (198)
59 TIGR03575 selen_PSTK_euk L-ser 99.3 9.8E-12 2.1E-16 132.1 12.0 149 225-390 1-196 (340)
60 PRK05506 bifunctional sulfate 99.3 1.9E-11 4.2E-16 141.1 15.0 172 163-350 398-575 (632)
61 PRK00625 shikimate kinase; Pro 99.3 2.7E-11 5.9E-16 117.5 13.4 137 225-383 2-141 (173)
62 PRK11545 gntK gluconate kinase 99.3 3.2E-11 6.9E-16 115.8 13.6 136 229-399 1-143 (163)
63 KOG3354 Gluconate kinase [Carb 99.3 8.8E-11 1.9E-15 109.3 14.1 153 221-400 10-171 (191)
64 COG3265 GntK Gluconate kinase 99.2 3.8E-11 8.2E-16 111.2 10.6 141 229-399 1-142 (161)
65 cd00464 SK Shikimate kinase (S 99.2 1.2E-10 2.6E-15 109.5 12.8 139 226-384 2-140 (154)
66 PRK13946 shikimate kinase; Pro 99.2 1.7E-10 3.6E-15 112.9 12.9 138 222-382 9-150 (184)
67 PRK05541 adenylylsulfate kinas 99.2 2.5E-10 5.4E-15 110.5 13.4 117 220-351 4-120 (176)
68 TIGR01359 UMP_CMP_kin_fam UMP- 99.2 1.2E-10 2.5E-15 113.2 11.1 155 225-399 1-167 (183)
69 PRK14532 adenylate kinase; Pro 99.2 5.6E-11 1.2E-15 116.2 8.9 157 225-399 2-170 (188)
70 PRK14021 bifunctional shikimat 99.2 2.7E-10 5.8E-15 129.1 14.7 144 220-383 3-150 (542)
71 PRK09825 idnK D-gluconate kina 99.2 9.2E-10 2E-14 107.1 16.0 142 223-399 3-151 (176)
72 PRK14531 adenylate kinase; Pro 99.1 1.1E-10 2.4E-15 114.1 8.6 152 225-399 4-167 (183)
73 PLN02199 shikimate kinase 99.1 1.6E-09 3.5E-14 112.4 16.7 142 223-383 102-251 (303)
74 PRK00131 aroK shikimate kinase 99.1 5.9E-10 1.3E-14 106.7 12.5 46 222-272 3-48 (175)
75 PRK14527 adenylate kinase; Pro 99.1 3.6E-10 7.8E-15 111.1 11.1 161 220-399 3-175 (191)
76 PRK13947 shikimate kinase; Pro 99.1 1E-09 2.2E-14 105.4 13.2 134 226-382 4-141 (171)
77 PRK05057 aroK shikimate kinase 99.1 1.1E-09 2.5E-14 106.0 13.5 140 223-383 4-145 (172)
78 PRK13949 shikimate kinase; Pro 99.1 8.3E-10 1.8E-14 106.7 12.5 139 226-383 4-146 (169)
79 PRK12339 2-phosphoglycerate ki 99.1 9E-09 2E-13 101.9 18.1 125 222-355 2-141 (197)
80 PLN02200 adenylate kinase fami 99.0 6.1E-10 1.3E-14 113.2 9.5 155 220-399 40-207 (234)
81 PRK03731 aroL shikimate kinase 99.0 2.2E-09 4.8E-14 103.2 12.4 137 225-383 4-145 (171)
82 PRK12337 2-phosphoglycerate ki 99.0 1.6E-08 3.5E-13 110.7 20.4 140 208-356 242-406 (475)
83 KOG4238 Bifunctional ATP sulfu 99.0 4.1E-10 8.8E-15 116.7 7.0 121 220-351 47-168 (627)
84 PF07931 CPT: Chloramphenicol 99.0 4.8E-09 1E-13 101.7 13.3 123 224-353 2-130 (174)
85 KOG3062 RNA polymerase II elon 99.0 2.9E-09 6.2E-14 104.8 10.7 142 225-390 3-147 (281)
86 PRK08154 anaerobic benzoate ca 99.0 6.5E-09 1.4E-13 110.0 13.2 148 218-382 128-275 (309)
87 PF06414 Zeta_toxin: Zeta toxi 99.0 7.7E-09 1.7E-13 102.4 12.9 133 219-356 11-144 (199)
88 PRK01184 hypothetical protein; 98.9 1.2E-08 2.7E-13 99.3 14.1 120 224-353 2-124 (184)
89 cd01428 ADK Adenylate kinase ( 98.9 1.5E-08 3.2E-13 99.1 14.0 161 226-399 2-187 (194)
90 PRK00279 adk adenylate kinase; 98.9 2.5E-09 5.4E-14 107.1 8.4 161 225-399 2-197 (215)
91 PRK12338 hypothetical protein; 98.9 3.7E-08 8E-13 103.8 15.8 214 221-452 2-242 (319)
92 PF01202 SKI: Shikimate kinase 98.9 3.4E-09 7.3E-14 101.1 7.4 130 232-384 1-134 (158)
93 TIGR01351 adk adenylate kinase 98.8 9.6E-09 2.1E-13 102.5 8.8 158 226-399 2-194 (210)
94 PRK14530 adenylate kinase; Pro 98.8 1.1E-08 2.4E-13 102.4 9.3 163 225-399 5-196 (215)
95 PLN02674 adenylate kinase 98.8 1.9E-08 4.1E-13 102.6 11.0 167 221-399 29-228 (244)
96 PRK13951 bifunctional shikimat 98.8 3E-08 6.6E-13 110.9 13.0 133 225-384 2-138 (488)
97 TIGR01360 aden_kin_iso1 adenyl 98.8 4E-08 8.7E-13 95.4 11.8 158 224-399 4-170 (188)
98 PLN02459 probable adenylate ki 98.7 5.2E-08 1.1E-12 100.0 9.7 165 221-399 27-234 (261)
99 PRK14528 adenylate kinase; Pro 98.7 1.1E-07 2.5E-12 93.2 11.5 156 225-399 3-171 (186)
100 PTZ00088 adenylate kinase 1; P 98.7 2.7E-07 5.9E-12 93.5 14.4 154 221-390 4-197 (229)
101 TIGR02173 cyt_kin_arch cytidyl 98.7 1.5E-07 3.4E-12 89.9 11.5 146 224-399 1-155 (171)
102 PRK04040 adenylate kinase; Pro 98.6 4.2E-07 9.1E-12 89.4 13.5 37 223-264 2-40 (188)
103 PRK06217 hypothetical protein; 98.6 3.8E-07 8.3E-12 89.0 13.0 129 225-381 3-133 (183)
104 PRK14526 adenylate kinase; Pro 98.6 1.1E-07 2.4E-12 95.2 9.0 157 226-399 3-192 (211)
105 PRK13808 adenylate kinase; Pro 98.6 5.6E-07 1.2E-11 95.5 14.6 162 226-399 3-176 (333)
106 PRK06547 hypothetical protein; 98.6 5.4E-07 1.2E-11 87.5 13.0 112 220-353 12-138 (172)
107 PRK06696 uridine kinase; Valid 98.6 5E-07 1.1E-11 91.1 12.8 54 209-262 8-61 (223)
108 cd02020 CMPK Cytidine monophos 98.6 1.4E-06 3.1E-11 80.9 14.7 145 225-399 1-146 (147)
109 PRK03839 putative kinase; Prov 98.6 2E-07 4.4E-12 90.5 9.3 35 225-264 2-36 (180)
110 PRK04182 cytidylate kinase; Pr 98.6 2E-07 4.2E-12 89.8 9.0 34 224-262 1-34 (180)
111 PRK02496 adk adenylate kinase; 98.6 2.2E-07 4.7E-12 90.6 9.3 152 225-399 3-167 (184)
112 PRK14529 adenylate kinase; Pro 98.6 2.5E-07 5.3E-12 93.3 9.7 122 226-355 3-128 (223)
113 PF13207 AAA_17: AAA domain; P 98.6 3.1E-07 6.7E-12 82.8 9.4 33 225-262 1-33 (121)
114 COG0563 Adk Adenylate kinase a 98.6 3.1E-07 6.8E-12 89.6 10.0 143 225-390 2-154 (178)
115 KOG3079 Uridylate kinase/adeny 98.5 5.7E-07 1.2E-11 86.6 11.0 147 219-388 4-161 (195)
116 cd02028 UMPK_like Uridine mono 98.5 7.1E-07 1.5E-11 87.1 11.4 153 225-391 1-171 (179)
117 PF00406 ADK: Adenylate kinase 98.5 3.2E-07 6.8E-12 86.6 8.4 127 228-388 1-142 (151)
118 COG1102 Cmk Cytidylate kinase 98.5 9.1E-07 2E-11 83.6 10.9 146 224-399 1-154 (179)
119 cd01672 TMPK Thymidine monopho 98.5 9.9E-06 2.1E-10 78.9 18.7 34 224-257 1-34 (200)
120 PRK07261 topology modulation p 98.5 8.1E-07 1.8E-11 86.0 10.3 99 225-354 2-100 (171)
121 COG0541 Ffh Signal recognition 98.4 2.8E-06 6E-11 91.7 14.0 45 220-264 97-141 (451)
122 PRK08356 hypothetical protein; 98.4 6.1E-06 1.3E-10 81.4 15.6 34 222-261 4-37 (195)
123 PRK08118 topology modulation p 98.4 5E-06 1.1E-10 80.2 13.8 33 225-262 3-35 (167)
124 PRK08233 hypothetical protein; 98.4 5.8E-06 1.3E-10 79.8 14.4 27 222-248 2-28 (182)
125 PRK10078 ribose 1,5-bisphospho 98.4 1.5E-06 3.2E-11 85.1 10.1 26 224-249 3-28 (186)
126 PRK07667 uridine kinase; Provi 98.4 8.6E-06 1.9E-10 80.4 15.1 42 221-262 15-56 (193)
127 PRK13973 thymidylate kinase; P 98.4 2.1E-05 4.6E-10 78.8 18.1 164 223-399 3-189 (213)
128 PRK04220 2-phosphoglycerate ki 98.4 1.8E-05 4E-10 82.9 18.0 139 209-356 80-237 (301)
129 PRK00698 tmk thymidylate kinas 98.4 1.3E-05 2.9E-10 78.9 16.1 35 222-256 2-36 (205)
130 TIGR02322 phosphon_PhnN phosph 98.4 5.5E-06 1.2E-10 80.2 12.9 27 224-250 2-28 (179)
131 TIGR00041 DTMP_kinase thymidyl 98.3 2.5E-05 5.4E-10 76.6 16.9 35 223-257 3-37 (195)
132 PF08303 tRNA_lig_kinase: tRNA 98.3 9.5E-06 2.1E-10 77.3 12.4 142 225-399 1-165 (168)
133 PRK05480 uridine/cytidine kina 98.3 1.3E-05 2.9E-10 79.7 13.6 41 220-262 3-43 (209)
134 PRK14730 coaE dephospho-CoA ki 98.3 2.2E-05 4.7E-10 77.7 14.8 39 224-267 2-40 (195)
135 PRK13975 thymidylate kinase; P 98.2 1.4E-05 3.1E-10 78.3 13.2 27 223-249 2-28 (196)
136 PRK06761 hypothetical protein; 98.2 5.3E-06 1.1E-10 86.4 10.6 121 223-351 3-125 (282)
137 PRK05416 glmZ(sRNA)-inactivati 98.2 2.6E-05 5.7E-10 81.7 15.5 108 223-363 6-115 (288)
138 PRK00300 gmk guanylate kinase; 98.2 1.8E-05 3.9E-10 78.2 13.0 28 221-248 3-30 (205)
139 PLN02348 phosphoribulokinase 98.2 2.5E-05 5.3E-10 84.5 14.8 158 219-389 45-234 (395)
140 PF00485 PRK: Phosphoribulokin 98.2 1.8E-05 4E-10 77.9 12.6 153 225-390 1-179 (194)
141 TIGR01425 SRP54_euk signal rec 98.2 2.2E-05 4.7E-10 86.2 13.8 43 221-263 98-140 (429)
142 TIGR03263 guanyl_kin guanylate 98.2 1.8E-05 3.9E-10 76.5 11.9 27 224-250 2-28 (180)
143 PF13238 AAA_18: AAA domain; P 98.1 5.8E-06 1.3E-10 74.7 7.5 22 226-247 1-22 (129)
144 PRK15453 phosphoribulokinase; 98.1 1.7E-05 3.8E-10 82.2 11.3 44 221-264 3-46 (290)
145 PRK14738 gmk guanylate kinase; 98.1 3E-05 6.5E-10 77.3 12.4 28 219-246 9-36 (206)
146 PRK14737 gmk guanylate kinase; 98.1 4.6E-05 9.9E-10 74.9 12.7 28 221-248 2-29 (186)
147 COG0572 Udk Uridine kinase [Nu 98.1 3.3E-05 7.2E-10 77.1 11.3 153 221-387 6-178 (218)
148 TIGR00152 dephospho-CoA kinase 98.0 4E-05 8.6E-10 75.1 11.5 37 225-266 1-37 (188)
149 cd02022 DPCK Dephospho-coenzym 98.0 6.4E-05 1.4E-09 73.2 12.6 36 225-266 1-36 (179)
150 PLN02842 nucleotide kinase 98.0 6.4E-05 1.4E-09 83.9 14.0 153 227-399 1-185 (505)
151 PRK00081 coaE dephospho-CoA ki 98.0 0.00011 2.3E-09 72.7 13.5 37 224-266 3-39 (194)
152 PTZ00301 uridine kinase; Provi 98.0 0.0001 2.2E-09 73.8 13.1 157 222-390 2-180 (210)
153 cd02029 PRK_like Phosphoribulo 98.0 3.8E-05 8.1E-10 79.1 9.9 40 225-264 1-40 (277)
154 PLN02924 thymidylate kinase 97.9 0.00018 3.8E-09 72.7 14.4 39 220-258 13-51 (220)
155 cd01673 dNK Deoxyribonucleosid 97.9 0.00011 2.3E-09 72.1 12.4 26 225-250 1-26 (193)
156 TIGR00235 udk uridine kinase. 97.9 0.00027 5.8E-09 70.4 15.4 41 220-262 3-43 (207)
157 cd02024 NRK1 Nicotinamide ribo 97.9 5.5E-05 1.2E-09 74.4 10.1 34 225-262 1-34 (187)
158 PRK10867 signal recognition pa 97.9 7.8E-05 1.7E-09 82.3 12.2 44 221-264 98-142 (433)
159 COG2074 2-phosphoglycerate kin 97.9 0.0002 4.3E-09 72.5 13.6 138 208-355 76-231 (299)
160 PF03668 ATP_bind_2: P-loop AT 97.9 0.00023 5E-09 73.8 13.8 126 224-382 2-129 (284)
161 PRK00771 signal recognition pa 97.8 6.3E-05 1.4E-09 83.2 9.8 44 221-264 93-136 (437)
162 cd02030 NDUO42 NADH:Ubiquinone 97.8 0.00021 4.6E-09 71.9 12.9 26 225-250 1-26 (219)
163 TIGR00017 cmk cytidylate kinas 97.8 0.00027 5.9E-09 71.2 13.6 35 223-262 2-36 (217)
164 PRK13477 bifunctional pantoate 97.8 2.6E-05 5.7E-10 87.5 6.7 39 221-264 282-321 (512)
165 PRK14733 coaE dephospho-CoA ki 97.8 0.00026 5.6E-09 70.6 13.0 41 221-266 4-44 (204)
166 cd02023 UMPK Uridine monophosp 97.8 0.00033 7.1E-09 69.1 13.5 37 225-263 1-37 (198)
167 PRK14731 coaE dephospho-CoA ki 97.8 0.00012 2.6E-09 73.1 10.5 40 221-266 3-42 (208)
168 COG3896 Chloramphenicol 3-O-ph 97.8 0.00029 6.4E-09 66.5 12.1 127 220-353 20-160 (205)
169 PLN02165 adenylate isopentenyl 97.8 0.00018 3.8E-09 76.5 12.1 38 220-262 40-77 (334)
170 PRK09270 nucleoside triphospha 97.8 0.00036 7.8E-09 70.7 13.8 42 220-261 30-72 (229)
171 KOG2134 Polynucleotide kinase 97.8 3.1E-05 6.7E-10 82.1 5.9 96 220-347 266-362 (422)
172 PRK07429 phosphoribulokinase; 97.8 0.001 2.2E-08 71.1 17.5 152 219-390 4-177 (327)
173 COG0237 CoaE Dephospho-CoA kin 97.8 0.00031 6.8E-09 69.9 12.6 36 223-264 2-37 (201)
174 PRK14734 coaE dephospho-CoA ki 97.8 0.0004 8.8E-09 69.0 13.1 36 224-265 2-37 (200)
175 COG4185 Uncharacterized protei 97.7 0.00034 7.3E-09 66.3 11.5 148 223-389 2-149 (187)
176 PRK00023 cmk cytidylate kinase 97.7 0.0004 8.7E-09 70.3 13.2 34 223-261 4-37 (225)
177 TIGR00959 ffh signal recogniti 97.7 0.00025 5.3E-09 78.3 12.1 44 221-264 97-141 (428)
178 PF00448 SRP54: SRP54-type pro 97.7 0.00044 9.5E-09 68.6 12.8 41 223-263 1-41 (196)
179 PF01121 CoaE: Dephospho-CoA k 97.7 0.00027 5.9E-09 69.1 10.6 116 224-354 1-144 (180)
180 PF00625 Guanylate_kin: Guanyl 97.7 0.00075 1.6E-08 65.8 13.2 26 223-248 2-27 (183)
181 PTZ00451 dephospho-CoA kinase; 97.7 0.00077 1.7E-08 69.1 13.6 38 224-266 2-39 (244)
182 KOG4622 Predicted nucleotide k 97.6 0.00032 6.9E-09 68.2 9.2 123 225-353 3-142 (291)
183 PLN02422 dephospho-CoA kinase 97.6 0.00084 1.8E-08 68.2 12.8 34 225-264 3-36 (232)
184 PRK09169 hypothetical protein; 97.6 0.00025 5.5E-09 88.8 10.6 137 224-383 2111-2255(2316)
185 PF02223 Thymidylate_kin: Thym 97.6 0.0045 9.7E-08 60.3 17.2 26 229-254 2-27 (186)
186 COG0283 Cmk Cytidylate kinase 97.6 0.0027 5.8E-08 63.3 15.3 36 224-264 5-41 (222)
187 smart00072 GuKc Guanylate kina 97.6 0.00083 1.8E-08 65.6 11.8 25 223-247 2-26 (184)
188 PRK05439 pantothenate kinase; 97.5 0.00039 8.4E-09 73.6 9.8 44 219-262 82-127 (311)
189 KOG0780 Signal recognition par 97.5 0.0014 3.1E-08 69.9 13.8 103 219-327 97-205 (483)
190 COG0125 Tmk Thymidylate kinase 97.5 0.011 2.3E-07 59.3 19.5 36 222-257 2-37 (208)
191 KOG3220 Similar to bacterial d 97.5 0.0025 5.4E-08 62.7 14.3 116 224-353 2-146 (225)
192 PRK07933 thymidylate kinase; V 97.5 0.0066 1.4E-07 60.9 18.0 34 224-257 1-34 (213)
193 KOG3347 Predicted nucleotide k 97.5 0.0009 2E-08 62.8 10.7 36 225-265 9-44 (176)
194 TIGR00064 ftsY signal recognit 97.5 0.00063 1.4E-08 70.9 10.9 44 220-263 69-112 (272)
195 PLN02318 phosphoribulokinase/u 97.5 0.00066 1.4E-08 76.9 11.5 40 220-263 62-101 (656)
196 PRK14974 cell division protein 97.5 0.0014 3E-08 70.3 13.3 45 220-264 137-181 (336)
197 PRK13974 thymidylate kinase; P 97.5 0.0042 9.1E-08 62.2 16.1 29 223-251 3-31 (212)
198 cd02019 NK Nucleoside/nucleoti 97.5 0.00014 3.1E-09 59.5 4.4 33 225-259 1-33 (69)
199 PF13189 Cytidylate_kin2: Cyti 97.4 0.0023 5E-08 62.4 13.3 35 225-264 1-35 (179)
200 COG2019 AdkA Archaeal adenylat 97.4 0.0015 3.3E-08 62.5 11.2 37 222-262 3-39 (189)
201 cd03115 SRP The signal recogni 97.4 0.0027 6E-08 61.0 13.4 39 225-263 2-40 (173)
202 PRK03333 coaE dephospho-CoA ki 97.4 0.0014 3.1E-08 71.9 12.6 36 225-266 3-38 (395)
203 PRK14732 coaE dephospho-CoA ki 97.4 0.0014 3E-08 65.1 11.3 36 225-266 1-36 (196)
204 cd02026 PRK Phosphoribulokinas 97.4 0.002 4.3E-08 67.2 12.8 192 225-442 1-215 (273)
205 COG0194 Gmk Guanylate kinase [ 97.4 0.0013 2.7E-08 64.2 10.4 26 222-247 3-28 (191)
206 PRK09518 bifunctional cytidyla 97.4 0.0034 7.4E-08 74.1 16.1 35 225-264 3-38 (712)
207 PRK11860 bifunctional 3-phosph 97.4 0.0042 9.1E-08 72.7 16.4 37 223-264 442-479 (661)
208 COG1936 Predicted nucleotide k 97.3 0.003 6.6E-08 60.8 11.9 35 224-264 1-35 (180)
209 cd02025 PanK Pantothenate kina 97.3 0.0012 2.6E-08 66.7 9.4 38 225-262 1-40 (220)
210 cd00071 GMPK Guanosine monopho 97.3 0.00077 1.7E-08 62.8 7.5 24 225-248 1-24 (137)
211 COG1428 Deoxynucleoside kinase 97.3 0.0026 5.6E-08 63.2 11.2 28 223-250 4-31 (216)
212 PRK10416 signal recognition pa 97.2 0.0014 3.1E-08 69.8 9.9 43 221-263 112-154 (318)
213 PRK13976 thymidylate kinase; P 97.2 0.0077 1.7E-07 60.4 14.4 34 224-257 1-36 (209)
214 KOG1532 GTPase XAB1, interacts 97.2 0.00089 1.9E-08 68.5 7.3 52 219-270 15-67 (366)
215 PF00004 AAA: ATPase family as 97.2 0.001 2.2E-08 60.1 7.2 34 226-262 1-34 (132)
216 COG0552 FtsY Signal recognitio 97.2 0.0063 1.4E-07 64.3 13.5 91 220-338 136-228 (340)
217 PRK00091 miaA tRNA delta(2)-is 97.1 0.0018 3.9E-08 68.7 9.2 35 222-261 3-37 (307)
218 cd07061 HP_HAP_like Histidine 97.1 0.00075 1.6E-08 68.6 5.9 57 433-498 5-69 (242)
219 PLN02840 tRNA dimethylallyltra 97.1 0.0019 4E-08 70.9 8.8 38 219-261 17-54 (421)
220 PRK09435 membrane ATPase/prote 97.0 0.0023 5.1E-08 68.4 8.8 51 210-261 44-94 (332)
221 COG1660 Predicted P-loop-conta 96.9 0.012 2.6E-07 60.2 12.6 165 225-441 3-172 (286)
222 PRK11889 flhF flagellar biosyn 96.9 0.0085 1.8E-07 65.2 12.3 43 221-263 239-281 (436)
223 CHL00181 cbbX CbbX; Provisiona 96.9 0.029 6.3E-07 59.0 15.4 31 221-251 57-87 (287)
224 PRK08084 DNA replication initi 96.8 0.017 3.6E-07 58.9 13.1 38 224-261 46-83 (235)
225 PRK12724 flagellar biosynthesi 96.8 0.019 4E-07 63.2 14.0 43 222-264 222-265 (432)
226 KOG3877 NADH:ubiquinone oxidor 96.8 0.038 8.2E-07 56.9 15.1 185 220-412 68-291 (393)
227 PLN02748 tRNA dimethylallyltra 96.8 0.0023 5E-08 71.3 7.0 90 220-317 19-123 (468)
228 PRK14956 DNA polymerase III su 96.7 0.043 9.2E-07 61.4 16.2 31 220-250 37-67 (484)
229 PRK14960 DNA polymerase III su 96.7 0.051 1.1E-06 62.8 17.2 31 220-250 34-64 (702)
230 PRK12323 DNA polymerase III su 96.7 0.043 9.3E-07 63.3 16.3 32 219-250 34-65 (700)
231 PF13521 AAA_28: AAA domain; P 96.7 0.0052 1.1E-07 58.6 7.6 24 226-250 2-25 (163)
232 cd01120 RecA-like_NTPases RecA 96.7 0.01 2.2E-07 55.2 9.4 37 225-261 1-37 (165)
233 KOG0744 AAA+-type ATPase [Post 96.6 0.0028 6E-08 66.5 5.4 28 223-250 177-204 (423)
234 PRK06645 DNA polymerase III su 96.6 0.046 9.9E-07 61.9 15.6 31 220-250 40-70 (507)
235 PF06309 Torsin: Torsin; Inte 96.6 0.0043 9.3E-08 57.0 6.0 49 209-257 39-87 (127)
236 PRK12726 flagellar biosynthesi 96.6 0.012 2.6E-07 63.8 10.3 43 221-263 204-246 (407)
237 smart00382 AAA ATPases associa 96.6 0.0022 4.7E-08 57.2 4.0 39 223-261 2-40 (148)
238 PRK06893 DNA replication initi 96.6 0.012 2.7E-07 59.5 9.9 36 225-260 41-76 (229)
239 PF03029 ATP_bind_1: Conserved 96.6 0.002 4.4E-08 65.8 4.0 33 228-260 1-33 (238)
240 COG1618 Predicted nucleotide k 96.6 0.0094 2E-07 56.9 8.1 107 223-334 5-133 (179)
241 TIGR00554 panK_bact pantothena 96.5 0.0029 6.3E-08 66.5 5.1 42 220-261 59-102 (290)
242 PF13173 AAA_14: AAA domain 96.5 0.019 4E-07 52.6 9.9 85 224-331 3-87 (128)
243 PLN02796 D-glycerate 3-kinase 96.5 0.003 6.5E-08 67.6 5.1 42 221-262 98-139 (347)
244 PRK14964 DNA polymerase III su 96.5 0.064 1.4E-06 60.4 15.8 31 220-250 32-62 (491)
245 PRK13695 putative NTPase; Prov 96.5 0.017 3.8E-07 55.6 10.0 29 225-253 2-30 (174)
246 PRK05800 cobU adenosylcobinami 96.5 0.0059 1.3E-07 59.2 6.5 25 224-248 2-26 (170)
247 cd00009 AAA The AAA+ (ATPases 96.5 0.023 4.9E-07 51.2 10.1 39 222-260 18-56 (151)
248 TIGR01618 phage_P_loop phage n 96.5 0.022 4.7E-07 57.6 10.5 42 220-268 9-50 (220)
249 PRK05973 replicative DNA helic 96.4 0.013 2.8E-07 59.9 8.9 40 221-260 62-101 (237)
250 TIGR00174 miaA tRNA isopenteny 96.4 0.0052 1.1E-07 64.4 6.1 32 225-261 1-32 (287)
251 PRK14955 DNA polymerase III su 96.4 0.069 1.5E-06 58.7 15.2 31 220-250 35-65 (397)
252 PHA00729 NTP-binding motif con 96.4 0.0047 1E-07 62.4 5.4 27 222-248 16-42 (226)
253 PRK12377 putative replication 96.4 0.044 9.6E-07 56.4 12.6 42 223-264 101-142 (248)
254 PLN03046 D-glycerate 3-kinase; 96.4 0.004 8.7E-08 68.0 5.2 43 220-262 209-251 (460)
255 cd00984 DnaB_C DnaB helicase C 96.4 0.027 5.9E-07 57.0 11.0 40 221-260 11-51 (242)
256 PRK07003 DNA polymerase III su 96.4 0.06 1.3E-06 63.0 14.8 31 220-250 35-65 (830)
257 TIGR00150 HI0065_YjeE ATPase, 96.4 0.0049 1.1E-07 57.3 4.9 30 221-250 20-49 (133)
258 PRK14949 DNA polymerase III su 96.4 0.051 1.1E-06 64.7 14.3 31 220-250 35-65 (944)
259 PRK14957 DNA polymerase III su 96.3 0.11 2.4E-06 59.2 16.7 30 220-249 35-64 (546)
260 PRK14951 DNA polymerase III su 96.3 0.11 2.3E-06 60.2 16.6 32 219-250 34-65 (618)
261 KOG1533 Predicted GTPase [Gene 96.3 0.019 4E-07 57.9 8.9 36 225-260 4-39 (290)
262 PRK14962 DNA polymerase III su 96.3 0.049 1.1E-06 61.2 13.3 31 220-250 33-63 (472)
263 PRK07952 DNA replication prote 96.3 0.066 1.4E-06 55.0 13.3 41 224-264 100-140 (244)
264 PRK05896 DNA polymerase III su 96.3 0.14 3E-06 58.9 17.1 31 220-250 35-65 (605)
265 PRK07994 DNA polymerase III su 96.3 0.099 2.1E-06 60.7 16.0 31 220-250 35-65 (647)
266 TIGR03015 pepcterm_ATPase puta 96.3 0.14 3.1E-06 52.4 15.7 28 221-248 41-68 (269)
267 TIGR03499 FlhF flagellar biosy 96.2 0.0044 9.5E-08 64.9 4.4 43 221-263 192-236 (282)
268 PRK08691 DNA polymerase III su 96.2 0.14 2.9E-06 59.8 16.7 31 220-250 35-65 (709)
269 KOG0730 AAA+-type ATPase [Post 96.2 0.041 8.9E-07 62.7 12.1 31 220-250 465-495 (693)
270 KOG0733 Nuclear AAA ATPase (VC 96.2 0.046 1E-06 61.8 12.2 28 223-250 223-250 (802)
271 PRK13768 GTPase; Provisional 96.2 0.0056 1.2E-07 63.1 4.9 39 223-261 2-40 (253)
272 TIGR02881 spore_V_K stage V sp 96.2 0.075 1.6E-06 54.9 13.1 29 221-249 40-68 (261)
273 KOG3078 Adenylate kinase [Nucl 96.2 0.0077 1.7E-07 61.0 5.5 153 222-390 14-195 (235)
274 PRK07764 DNA polymerase III su 96.2 0.094 2E-06 62.7 15.4 32 219-250 33-64 (824)
275 TIGR02880 cbbX_cfxQ probable R 96.1 0.088 1.9E-06 55.2 13.5 29 223-251 58-86 (284)
276 cd01124 KaiC KaiC is a circadi 96.1 0.058 1.3E-06 52.0 11.3 36 225-260 1-36 (187)
277 PRK08727 hypothetical protein; 96.1 0.045 9.8E-07 55.6 11.0 37 225-261 43-79 (233)
278 PRK14963 DNA polymerase III su 96.1 0.091 2E-06 59.6 14.4 31 220-250 33-63 (504)
279 smart00763 AAA_PrkA PrkA AAA d 96.1 0.0077 1.7E-07 64.8 5.4 30 220-249 75-104 (361)
280 PRK05703 flhF flagellar biosyn 96.1 0.094 2E-06 58.2 14.1 41 223-263 221-263 (424)
281 cd01122 GP4d_helicase GP4d_hel 96.1 0.048 1E-06 56.3 11.1 39 222-260 29-68 (271)
282 PRK14958 DNA polymerase III su 96.1 0.13 2.9E-06 58.3 15.4 31 220-250 35-65 (509)
283 cd02034 CooC The accessory pro 96.1 0.0075 1.6E-07 54.7 4.5 36 226-261 2-37 (116)
284 PRK14722 flhF flagellar biosyn 96.0 0.058 1.2E-06 58.7 11.9 43 221-263 135-179 (374)
285 TIGR00750 lao LAO/AO transport 96.0 0.011 2.4E-07 62.4 6.3 50 210-260 22-71 (300)
286 COG4175 ProV ABC-type proline/ 96.0 0.045 9.9E-07 57.6 10.5 27 221-247 52-78 (386)
287 PRK05642 DNA replication initi 96.0 0.062 1.3E-06 54.7 11.4 39 224-262 46-84 (234)
288 PRK08181 transposase; Validate 96.0 0.052 1.1E-06 56.5 11.0 41 224-264 107-147 (269)
289 PRK08099 bifunctional DNA-bind 96.0 0.019 4.1E-07 63.2 8.0 31 220-250 216-246 (399)
290 PRK14961 DNA polymerase III su 96.0 0.16 3.6E-06 55.1 15.2 30 220-249 35-64 (363)
291 PRK14950 DNA polymerase III su 96.0 0.17 3.6E-06 58.6 16.0 31 220-250 35-65 (585)
292 PRK09087 hypothetical protein; 96.0 0.04 8.6E-07 55.9 9.7 31 225-260 46-76 (226)
293 TIGR00176 mobB molybdopterin-g 95.9 0.0076 1.7E-07 57.5 4.1 36 225-260 1-36 (155)
294 PRK14959 DNA polymerase III su 95.9 0.24 5.1E-06 57.3 16.8 30 221-250 36-65 (624)
295 PRK12269 bifunctional cytidyla 95.9 0.0078 1.7E-07 71.9 5.1 40 220-264 31-71 (863)
296 PLN02772 guanylate kinase 95.9 0.078 1.7E-06 57.8 12.2 27 222-248 134-160 (398)
297 PRK10751 molybdopterin-guanine 95.9 0.011 2.3E-07 57.6 5.1 37 221-257 4-40 (173)
298 TIGR03707 PPK2_P_aer polyphosp 95.9 0.45 9.8E-06 48.4 17.0 110 220-354 28-157 (230)
299 PRK14965 DNA polymerase III su 95.9 0.18 3.9E-06 58.2 15.9 31 220-250 35-65 (576)
300 cd01983 Fer4_NifH The Fer4_Nif 95.9 0.0089 1.9E-07 50.4 3.9 34 225-258 1-34 (99)
301 PRK04296 thymidine kinase; Pro 95.9 0.032 6.9E-07 54.9 8.3 37 223-259 2-38 (190)
302 PRK14948 DNA polymerase III su 95.8 0.19 4.1E-06 58.4 15.7 29 222-250 37-65 (620)
303 PRK09111 DNA polymerase III su 95.8 0.15 3.2E-06 59.1 14.5 32 219-250 42-73 (598)
304 PRK06526 transposase; Provisio 95.8 0.052 1.1E-06 56.1 9.8 41 222-262 97-137 (254)
305 PF03796 DnaB_C: DnaB-like hel 95.8 0.062 1.3E-06 55.3 10.4 109 221-338 17-137 (259)
306 PRK14954 DNA polymerase III su 95.8 0.35 7.7E-06 56.1 17.4 32 219-250 34-65 (620)
307 PRK08116 hypothetical protein; 95.8 0.12 2.6E-06 53.8 12.4 40 223-262 114-153 (268)
308 PRK14490 putative bifunctional 95.8 0.011 2.3E-07 64.4 4.9 36 221-257 3-38 (369)
309 COG5324 Uncharacterized conser 95.7 0.05 1.1E-06 59.6 9.6 139 220-391 371-515 (758)
310 PRK09183 transposase/IS protei 95.7 0.071 1.5E-06 55.2 10.6 41 223-263 102-142 (259)
311 PRK14952 DNA polymerase III su 95.7 0.23 4.9E-06 57.3 15.4 32 219-250 31-62 (584)
312 KOG1384 tRNA delta(2)-isopente 95.7 0.07 1.5E-06 56.3 10.2 122 222-354 6-159 (348)
313 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.021 4.6E-07 57.0 6.3 42 221-262 36-77 (226)
314 PRK14729 miaA tRNA delta(2)-is 95.7 0.033 7.1E-07 58.8 7.9 87 222-317 3-104 (300)
315 cd03116 MobB Molybdenum is an 95.7 0.015 3.3E-07 55.7 4.9 35 224-258 2-36 (159)
316 TIGR03708 poly_P_AMP_trns poly 95.7 0.41 8.8E-06 54.0 16.7 110 220-354 37-166 (493)
317 PRK06921 hypothetical protein; 95.6 0.15 3.2E-06 53.1 12.6 39 223-261 117-156 (266)
318 COG1419 FlhF Flagellar GTP-bin 95.6 0.26 5.6E-06 53.8 14.6 43 222-264 202-246 (407)
319 cd03114 ArgK-like The function 95.6 0.012 2.5E-07 55.8 3.9 37 225-261 1-37 (148)
320 PF05496 RuvB_N: Holliday junc 95.6 0.042 9.2E-07 55.5 8.0 27 224-250 51-77 (233)
321 PF00328 His_Phos_2: Histidine 95.6 0.026 5.6E-07 59.5 7.0 46 453-498 60-112 (347)
322 PRK14969 DNA polymerase III su 95.6 0.27 5.8E-06 56.2 15.5 31 220-250 35-65 (527)
323 PRK12723 flagellar biosynthesi 95.6 0.013 2.9E-07 64.0 4.8 44 221-264 172-219 (388)
324 PRK14494 putative molybdopteri 95.6 0.02 4.2E-07 58.2 5.6 35 224-258 2-36 (229)
325 COG4240 Predicted kinase [Gene 95.6 0.018 3.9E-07 57.8 5.2 43 220-262 47-90 (300)
326 TIGR00362 DnaA chromosomal rep 95.6 0.24 5.2E-06 54.5 14.6 38 225-262 138-177 (405)
327 TIGR03878 thermo_KaiC_2 KaiC d 95.5 0.14 3E-06 53.0 11.8 39 222-260 35-73 (259)
328 PRK12727 flagellar biosynthesi 95.5 0.1 2.3E-06 58.9 11.6 43 221-263 348-392 (559)
329 PF07728 AAA_5: AAA domain (dy 95.5 0.014 3E-07 53.9 4.0 25 226-250 2-26 (139)
330 PRK07133 DNA polymerase III su 95.5 0.34 7.5E-06 56.9 16.1 32 219-250 36-67 (725)
331 TIGR02397 dnaX_nterm DNA polym 95.5 0.23 5E-06 53.1 13.9 31 220-250 33-63 (355)
332 PF03205 MobB: Molybdopterin g 95.5 0.017 3.8E-07 54.1 4.4 35 225-259 2-37 (140)
333 PRK08903 DnaA regulatory inact 95.5 0.087 1.9E-06 53.0 9.8 40 223-262 42-81 (227)
334 TIGR00390 hslU ATP-dependent p 95.5 0.016 3.4E-07 63.7 4.6 29 222-250 46-74 (441)
335 PF13481 AAA_25: AAA domain; P 95.5 0.15 3.2E-06 49.6 11.2 39 222-260 31-79 (193)
336 TIGR03709 PPK2_rel_1 polyphosp 95.5 0.24 5.1E-06 51.4 13.1 110 220-354 53-182 (264)
337 cd01394 radB RadB. The archaea 95.4 0.02 4.4E-07 57.1 5.2 40 221-260 17-56 (218)
338 PRK00149 dnaA chromosomal repl 95.4 0.18 3.9E-06 56.3 13.3 39 225-263 150-190 (450)
339 cd04163 Era Era subfamily. Er 95.4 0.034 7.4E-07 51.3 6.4 24 223-246 3-26 (168)
340 PRK10646 ADP-binding protein; 95.4 0.025 5.4E-07 53.9 5.2 39 210-249 16-54 (153)
341 TIGR02012 tigrfam_recA protein 95.4 0.088 1.9E-06 56.2 9.9 40 221-260 53-92 (321)
342 PLN03025 replication factor C 95.4 0.17 3.6E-06 53.9 12.1 29 221-250 33-61 (319)
343 PRK13886 conjugal transfer pro 95.4 0.13 2.7E-06 52.8 10.6 40 223-262 3-42 (241)
344 PHA03132 thymidine kinase; Pro 95.4 2.3 5.1E-05 48.8 21.7 25 223-247 257-281 (580)
345 PHA02575 1 deoxynucleoside mon 95.4 0.017 3.6E-07 58.3 4.1 23 224-246 1-23 (227)
346 PRK05201 hslU ATP-dependent pr 95.3 0.039 8.3E-07 60.7 7.2 28 223-250 50-77 (443)
347 PF05729 NACHT: NACHT domain 95.3 0.015 3.3E-07 54.4 3.6 26 225-250 2-27 (166)
348 TIGR03877 thermo_KaiC_1 KaiC d 95.3 0.12 2.5E-06 52.7 10.2 40 221-260 19-58 (237)
349 PRK14953 DNA polymerase III su 95.3 0.5 1.1E-05 53.4 16.1 30 220-249 35-64 (486)
350 PRK06620 hypothetical protein; 95.3 0.26 5.7E-06 49.5 12.6 26 224-249 45-70 (214)
351 cd01131 PilT Pilus retraction 95.2 0.18 4E-06 49.8 11.2 25 225-249 3-27 (198)
352 PRK05563 DNA polymerase III su 95.2 0.28 6.2E-06 56.4 14.2 31 220-250 35-65 (559)
353 PF01695 IstB_IS21: IstB-like 95.2 0.028 6E-07 54.9 5.2 46 222-267 46-91 (178)
354 PF00931 NB-ARC: NB-ARC domain 95.2 0.12 2.5E-06 53.5 10.2 26 221-246 17-42 (287)
355 PRK14086 dnaA chromosomal repl 95.2 0.3 6.4E-06 56.4 14.1 38 226-263 317-356 (617)
356 PRK14723 flhF flagellar biosyn 95.2 0.2 4.3E-06 59.1 12.8 42 222-263 184-227 (767)
357 TIGR03600 phage_DnaB phage rep 95.2 0.22 4.8E-06 55.1 12.8 110 220-338 191-312 (421)
358 PRK14489 putative bifunctional 95.1 0.057 1.2E-06 58.7 7.7 39 220-258 202-240 (366)
359 cd00983 recA RecA is a bacter 95.1 0.15 3.2E-06 54.5 10.6 38 222-259 54-91 (325)
360 TIGR02237 recomb_radB DNA repa 95.1 0.03 6.6E-07 55.4 5.2 40 221-260 10-49 (209)
361 TIGR01650 PD_CobS cobaltochela 95.1 0.017 3.8E-07 61.5 3.5 26 226-251 67-92 (327)
362 TIGR00665 DnaB replicative DNA 95.1 0.19 4.2E-06 55.7 12.0 109 221-338 193-312 (434)
363 KOG0738 AAA+-type ATPase [Post 95.1 0.15 3.3E-06 55.0 10.3 27 224-250 246-272 (491)
364 PF02367 UPF0079: Uncharacteri 95.0 0.026 5.7E-07 51.8 4.1 29 221-249 13-41 (123)
365 COG3911 Predicted ATPase [Gene 95.0 0.49 1.1E-05 44.8 12.3 27 221-247 7-33 (183)
366 PTZ00361 26 proteosome regulat 95.0 0.49 1.1E-05 52.7 14.7 29 222-250 216-244 (438)
367 COG0324 MiaA tRNA delta(2)-iso 95.0 0.068 1.5E-06 56.5 7.4 35 222-261 2-36 (308)
368 PRK06731 flhF flagellar biosyn 94.9 0.3 6.6E-06 50.9 12.1 42 222-263 74-115 (270)
369 PF00910 RNA_helicase: RNA hel 94.9 0.02 4.4E-07 50.9 2.9 24 226-249 1-24 (107)
370 PRK04328 hypothetical protein; 94.9 0.16 3.4E-06 52.2 9.9 39 222-260 22-60 (249)
371 PHA02544 44 clamp loader, smal 94.9 0.33 7.2E-06 51.2 12.7 30 220-249 40-69 (316)
372 PRK13342 recombination factor 94.9 0.33 7.2E-06 53.6 13.0 28 223-250 36-63 (413)
373 PLN00020 ribulose bisphosphate 94.8 0.069 1.5E-06 57.8 7.2 51 209-262 133-184 (413)
374 PTZ00202 tuzin; Provisional 94.8 0.34 7.5E-06 53.6 12.5 85 164-248 215-311 (550)
375 COG1703 ArgK Putative periplas 94.8 0.052 1.1E-06 56.7 6.0 50 210-260 39-88 (323)
376 PRK06835 DNA replication prote 94.8 0.32 6.9E-06 52.2 12.2 41 224-264 184-224 (329)
377 PF13245 AAA_19: Part of AAA d 94.8 0.031 6.8E-07 46.8 3.6 25 223-247 10-34 (76)
378 PRK10463 hydrogenase nickel in 94.8 0.048 1E-06 57.3 5.8 31 219-249 100-130 (290)
379 PRK05595 replicative DNA helic 94.8 0.26 5.6E-06 55.0 12.0 109 220-338 198-318 (444)
380 PRK09361 radB DNA repair and r 94.8 0.041 9E-07 55.2 5.2 40 221-260 21-60 (225)
381 PRK05636 replicative DNA helic 94.8 0.19 4.1E-06 57.0 10.9 109 221-338 263-382 (505)
382 PRK08939 primosomal protein Dn 94.8 0.49 1.1E-05 50.2 13.4 107 223-350 156-269 (306)
383 PF13191 AAA_16: AAA ATPase do 94.7 0.028 6.1E-07 53.8 3.6 32 219-250 20-51 (185)
384 PRK08760 replicative DNA helic 94.7 0.23 4.9E-06 56.0 11.3 109 220-338 226-346 (476)
385 PRK12422 chromosomal replicati 94.7 0.38 8.3E-06 53.7 13.0 37 226-262 144-180 (445)
386 PF07724 AAA_2: AAA domain (Cd 94.7 0.063 1.4E-06 52.1 6.0 40 223-262 3-43 (171)
387 PRK14493 putative bifunctional 94.7 0.038 8.3E-07 57.7 4.7 35 225-260 3-37 (274)
388 PRK08006 replicative DNA helic 94.6 0.32 7E-06 54.7 12.3 110 220-338 221-343 (471)
389 PF13401 AAA_22: AAA domain; P 94.6 0.03 6.5E-07 50.6 3.4 28 222-249 3-30 (131)
390 PRK14087 dnaA chromosomal repl 94.6 1.5 3.2E-05 49.2 17.4 38 226-263 144-183 (450)
391 TIGR01526 nadR_NMN_Atrans nico 94.6 0.14 3.1E-06 54.7 9.1 27 224-250 163-189 (325)
392 CHL00195 ycf46 Ycf46; Provisio 94.6 0.089 1.9E-06 59.3 7.8 30 221-250 257-286 (489)
393 TIGR03881 KaiC_arch_4 KaiC dom 94.6 0.25 5.5E-06 49.6 10.5 39 221-259 18-56 (229)
394 PRK03992 proteasome-activating 94.6 0.11 2.3E-06 57.1 8.2 30 221-250 163-192 (389)
395 cd02035 ArsA ArsA ATPase funct 94.6 0.033 7.1E-07 55.9 3.9 38 225-262 1-38 (217)
396 cd04169 RF3 RF3 subfamily. Pe 94.6 0.43 9.4E-06 49.6 12.4 25 225-249 4-28 (267)
397 cd01895 EngA2 EngA2 subfamily. 94.5 0.11 2.4E-06 48.4 7.2 24 223-246 2-25 (174)
398 COG0467 RAD55 RecA-superfamily 94.5 0.096 2.1E-06 54.0 7.2 41 221-261 21-61 (260)
399 PRK11331 5-methylcytosine-spec 94.5 0.087 1.9E-06 58.5 7.1 26 224-249 195-220 (459)
400 PF01745 IPT: Isopentenyl tran 94.5 0.35 7.7E-06 48.5 10.6 125 224-356 2-140 (233)
401 PF03266 NTPase_1: NTPase; In 94.5 0.033 7.1E-07 53.9 3.4 23 226-248 2-24 (168)
402 cd00878 Arf_Arl Arf (ADP-ribos 94.5 0.087 1.9E-06 49.1 6.2 21 226-246 2-22 (158)
403 PF06745 KaiC: KaiC; InterPro 94.5 0.17 3.8E-06 50.7 8.8 39 222-260 18-57 (226)
404 PF03308 ArgK: ArgK protein; 94.4 0.074 1.6E-06 54.7 6.0 41 220-260 26-66 (266)
405 PRK08506 replicative DNA helic 94.4 0.3 6.5E-06 55.0 11.5 110 220-338 189-309 (472)
406 PRK06305 DNA polymerase III su 94.4 0.73 1.6E-05 51.6 14.4 31 220-250 36-66 (451)
407 COG2256 MGS1 ATPase related to 94.4 0.088 1.9E-06 57.1 6.7 29 222-250 47-75 (436)
408 PTZ00454 26S protease regulato 94.4 0.15 3.2E-06 56.1 8.8 29 222-250 178-206 (398)
409 COG1072 CoaA Panthothenate kin 94.4 0.056 1.2E-06 55.9 5.1 42 219-260 78-121 (283)
410 cd00881 GTP_translation_factor 94.4 0.13 2.8E-06 49.1 7.4 25 226-250 2-26 (189)
411 PRK04195 replication factor C 94.4 0.1 2.2E-06 58.9 7.6 28 223-250 39-66 (482)
412 COG4608 AppF ABC-type oligopep 94.4 0.2 4.3E-06 51.9 8.9 27 222-248 38-64 (268)
413 smart00178 SAR Sar1p-like memb 94.4 0.13 2.8E-06 49.9 7.4 26 220-245 14-39 (184)
414 cd04156 ARLTS1 ARLTS1 subfamil 94.4 0.062 1.4E-06 50.1 5.0 21 226-246 2-22 (160)
415 COG1484 DnaC DNA replication p 94.3 0.16 3.4E-06 52.5 8.3 42 222-263 104-145 (254)
416 COG1132 MdlB ABC-type multidru 94.3 0.16 3.4E-06 58.4 9.2 51 222-272 354-411 (567)
417 PF02492 cobW: CobW/HypB/UreG, 94.3 0.055 1.2E-06 52.6 4.7 32 225-257 2-33 (178)
418 KOG3308 Uncharacterized protei 94.3 0.043 9.3E-07 54.2 3.8 37 222-262 3-39 (225)
419 cd04139 RalA_RalB RalA/RalB su 94.3 0.035 7.5E-07 51.7 3.1 20 226-245 3-22 (164)
420 cd02037 MRP-like MRP (Multiple 94.3 0.047 1E-06 52.3 4.0 37 225-261 2-38 (169)
421 PRK12402 replication factor C 94.3 0.56 1.2E-05 49.7 12.7 36 225-260 38-75 (337)
422 PF07726 AAA_3: ATPase family 94.2 0.024 5.2E-07 52.3 1.8 25 226-250 2-26 (131)
423 KOG2004 Mitochondrial ATP-depe 94.2 0.037 7.9E-07 63.6 3.5 31 220-250 435-465 (906)
424 COG0466 Lon ATP-dependent Lon 94.2 0.048 1E-06 62.8 4.5 42 220-264 347-388 (782)
425 cd00154 Rab Rab family. Rab G 94.2 0.059 1.3E-06 49.3 4.5 21 226-246 3-23 (159)
426 PRK06321 replicative DNA helic 94.2 0.37 8E-06 54.3 11.4 109 220-338 223-343 (472)
427 cd04162 Arl9_Arfrp2_like Arl9/ 94.2 0.098 2.1E-06 49.7 6.0 21 226-246 2-22 (164)
428 PRK06995 flhF flagellar biosyn 94.2 0.046 1E-06 61.3 4.2 43 221-263 254-298 (484)
429 PRK12608 transcription termina 94.1 0.21 4.6E-06 54.2 9.1 28 223-250 133-160 (380)
430 PRK11823 DNA repair protein Ra 94.1 0.41 9E-06 53.5 11.7 39 222-260 79-117 (446)
431 TIGR00073 hypB hydrogenase acc 94.1 0.051 1.1E-06 54.0 4.1 29 220-248 19-47 (207)
432 cd01887 IF2_eIF5B IF2/eIF5B (i 94.1 0.3 6.4E-06 45.7 9.1 22 225-246 2-23 (168)
433 KOG1534 Putative transcription 94.1 0.051 1.1E-06 54.0 3.8 40 224-263 4-43 (273)
434 PRK13341 recombination factor 94.0 1.4 3E-05 52.2 16.2 26 225-250 54-79 (725)
435 COG1855 ATPase (PilT family) [ 94.0 0.042 9E-07 60.1 3.3 35 223-257 263-297 (604)
436 TIGR00767 rho transcription te 94.0 0.22 4.8E-06 54.6 8.9 30 221-250 166-195 (415)
437 TIGR00635 ruvB Holliday juncti 94.0 0.05 1.1E-06 57.2 3.8 27 223-249 30-56 (305)
438 cd03246 ABCC_Protease_Secretio 94.0 0.46 9.9E-06 45.7 10.2 27 222-248 27-53 (173)
439 TIGR03689 pup_AAA proteasome A 94.0 0.15 3.2E-06 57.8 7.8 28 223-250 216-243 (512)
440 TIGR03880 KaiC_arch_3 KaiC dom 93.9 0.28 6.1E-06 49.2 9.1 39 222-260 15-53 (224)
441 TIGR02640 gas_vesic_GvpN gas v 93.9 0.055 1.2E-06 56.0 4.0 25 226-250 24-48 (262)
442 PF00308 Bac_DnaA: Bacterial d 93.9 1 2.2E-05 45.3 13.1 37 226-262 37-75 (219)
443 PRK14088 dnaA chromosomal repl 93.9 1.2 2.5E-05 49.8 14.7 37 226-262 133-171 (440)
444 COG0470 HolB ATPase involved i 93.9 0.38 8.2E-06 50.5 10.4 30 221-250 22-51 (325)
445 KOG1969 DNA replication checkp 93.9 0.057 1.2E-06 62.2 4.2 31 220-250 323-353 (877)
446 cd00820 PEPCK_HprK Phosphoenol 93.8 0.076 1.6E-06 47.5 4.2 23 222-244 14-36 (107)
447 cd01121 Sms Sms (bacterial rad 93.8 0.39 8.5E-06 52.4 10.5 40 221-260 80-119 (372)
448 TIGR01243 CDC48 AAA family ATP 93.8 0.66 1.4E-05 55.2 13.3 29 222-250 486-514 (733)
449 PRK14970 DNA polymerase III su 93.8 1 2.2E-05 48.8 13.8 31 220-250 36-66 (367)
450 cd04119 RJL RJL (RabJ-Like) su 93.8 0.063 1.4E-06 50.1 3.9 21 226-246 3-23 (168)
451 PRK09354 recA recombinase A; P 93.8 0.38 8.2E-06 51.9 10.2 40 221-260 58-97 (349)
452 PRK05342 clpX ATP-dependent pr 93.8 0.054 1.2E-06 59.8 3.9 27 224-250 109-135 (412)
453 COG1223 Predicted ATPase (AAA+ 93.8 0.9 2E-05 46.9 12.2 45 205-250 129-178 (368)
454 TIGR00101 ureG urease accessor 93.8 0.062 1.3E-06 53.4 3.9 27 223-249 1-27 (199)
455 PF01656 CbiA: CobQ/CobB/MinD/ 93.8 0.079 1.7E-06 51.2 4.6 37 225-261 1-37 (195)
456 cd04161 Arl2l1_Arl13_like Arl2 93.8 0.067 1.4E-06 51.0 4.0 21 226-246 2-22 (167)
457 COG0464 SpoVK ATPases of the A 93.8 0.15 3.2E-06 57.7 7.4 30 221-250 274-303 (494)
458 COG3709 Uncharacterized compon 93.8 0.21 4.5E-06 48.0 7.0 28 222-249 4-31 (192)
459 PRK09165 replicative DNA helic 93.7 0.47 1E-05 53.8 11.3 110 220-338 214-348 (497)
460 TIGR01241 FtsH_fam ATP-depende 93.7 0.18 3.9E-06 57.1 7.9 29 222-250 87-115 (495)
461 KOG0781 Signal recognition par 93.7 0.51 1.1E-05 52.2 10.9 47 216-262 371-417 (587)
462 cd03214 ABC_Iron-Siderophores_ 93.7 0.41 8.9E-06 46.3 9.5 27 222-248 24-50 (180)
463 PF02421 FeoB_N: Ferrous iron 93.7 0.077 1.7E-06 50.7 4.2 104 225-339 2-113 (156)
464 PF13479 AAA_24: AAA domain 93.6 0.13 2.9E-06 51.4 6.0 31 222-260 2-32 (213)
465 PF04665 Pox_A32: Poxvirus A32 93.6 0.82 1.8E-05 46.8 11.8 30 221-250 11-40 (241)
466 cd00550 ArsA_ATPase Oxyanion-t 93.6 0.076 1.7E-06 54.7 4.4 37 225-261 2-38 (254)
467 cd01393 recA_like RecA is a b 93.6 0.5 1.1E-05 47.2 10.2 39 221-259 17-61 (226)
468 cd02033 BchX Chlorophyllide re 93.6 0.11 2.3E-06 55.8 5.6 43 220-262 28-70 (329)
469 PRK08840 replicative DNA helic 93.6 0.62 1.3E-05 52.4 11.8 110 220-338 214-336 (464)
470 cd02036 MinD Bacterial cell di 93.6 0.08 1.7E-06 50.5 4.2 37 225-261 2-38 (179)
471 PRK15455 PrkA family serine pr 93.6 0.057 1.2E-06 61.4 3.6 31 220-250 100-130 (644)
472 cd01891 TypA_BipA TypA (tyrosi 93.6 0.26 5.5E-06 48.2 7.8 22 225-246 4-25 (194)
473 PRK06067 flagellar accessory p 93.6 0.38 8.2E-06 48.6 9.3 40 221-260 23-62 (234)
474 COG1341 Predicted GTPase or GT 93.5 0.09 1.9E-06 57.1 4.8 43 220-262 70-112 (398)
475 PRK00440 rfc replication facto 93.5 0.96 2.1E-05 47.4 12.6 25 226-250 41-65 (319)
476 PRK00411 cdc6 cell division co 93.5 1.9 4E-05 47.0 15.2 40 220-259 52-93 (394)
477 COG1126 GlnQ ABC-type polar am 93.4 0.063 1.4E-06 53.8 3.2 24 221-244 26-49 (240)
478 cd04152 Arl4_Arl7 Arl4/Arl7 su 93.4 0.13 2.8E-06 49.8 5.4 23 223-245 3-25 (183)
479 TIGR01242 26Sp45 26S proteasom 93.4 0.079 1.7E-06 57.4 4.3 29 222-250 155-183 (364)
480 PRK09112 DNA polymerase III su 93.4 0.75 1.6E-05 49.8 11.7 39 209-249 33-71 (351)
481 TIGR03029 EpsG chain length de 93.4 0.14 3E-06 53.1 5.9 42 220-261 101-142 (274)
482 cd01886 EF-G Elongation factor 93.4 1.7 3.6E-05 45.3 13.9 24 226-249 2-25 (270)
483 COG4615 PvdE ABC-type sideroph 93.4 0.16 3.5E-06 55.0 6.3 48 221-268 347-401 (546)
484 PRK06647 DNA polymerase III su 93.3 1.9 4E-05 49.8 15.4 31 220-250 35-65 (563)
485 KOG0991 Replication factor C, 93.3 0.14 3.1E-06 51.8 5.5 22 226-247 51-72 (333)
486 PRK08451 DNA polymerase III su 93.3 1.7 3.7E-05 49.6 14.8 31 219-249 32-62 (535)
487 PRK08533 flagellar accessory p 93.3 0.12 2.6E-06 52.5 5.2 38 223-260 24-61 (230)
488 PF03976 PPK2: Polyphosphate k 93.3 0.12 2.6E-06 52.6 5.0 110 220-354 28-157 (228)
489 PRK00080 ruvB Holliday junctio 93.3 0.073 1.6E-06 56.8 3.7 28 223-250 51-78 (328)
490 PRK06851 hypothetical protein; 93.2 0.099 2.2E-06 56.7 4.7 36 222-257 29-64 (367)
491 TIGR00763 lon ATP-dependent pr 93.2 0.14 3.1E-06 61.2 6.4 28 223-250 347-374 (775)
492 cd03247 ABCC_cytochrome_bd The 93.2 0.81 1.8E-05 44.1 10.6 27 222-248 27-53 (178)
493 PRK05748 replicative DNA helic 93.2 0.67 1.5E-05 51.8 11.3 110 220-338 200-321 (448)
494 COG1763 MobB Molybdopterin-gua 93.2 0.11 2.3E-06 50.1 4.2 35 223-257 2-36 (161)
495 cd04168 TetM_like Tet(M)-like 93.1 1.1 2.5E-05 45.6 12.0 24 226-249 2-25 (237)
496 cd04149 Arf6 Arf6 subfamily. 93.1 0.16 3.4E-06 48.5 5.4 22 224-245 10-31 (168)
497 PF06564 YhjQ: YhjQ protein; 93.1 1.6 3.5E-05 44.8 12.9 46 225-270 3-51 (243)
498 CHL00175 minD septum-site dete 93.1 0.12 2.7E-06 53.6 5.0 41 221-261 14-54 (281)
499 PTZ00369 Ras-like protein; Pro 93.1 0.1 2.2E-06 50.8 4.0 22 224-245 6-27 (189)
500 cd01130 VirB11-like_ATPase Typ 93.0 0.077 1.7E-06 51.9 3.2 26 223-248 25-50 (186)
No 1
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-62 Score=516.42 Aligned_cols=399 Identities=52% Similarity=0.879 Sum_probs=375.2
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM 298 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~ 298 (625)
.+..|.+|+|+|+|++|||.++.+|.+++.|.|+++..|+.+.||+...+......||..++.++...+.+++..++.++
T Consensus 24 ~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D~ 103 (438)
T KOG0234|consen 24 FMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALNDL 103 (438)
T ss_pred ccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhhH
Confidence 46789999999999999999999999999999999999999999998888766678999999999999999999999999
Q ss_pred HHHHH-cCCcEEEEecCCCcHHHHHHHHHH-H-cCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHH
Q 006920 299 ISWMH-EGGQVGIFDATNSSRKRRNMLMKM-A-EGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 375 (625)
Q Consensus 299 ~~~l~-~~g~vvIvDatn~~~~~R~~~~~l-~-~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~ 375 (625)
..++. .+|+++|+||||.++.+|..+..+ . +.++++.||+..|.+++++.+|++.++..+|++.++ +.+.+.++|.
T Consensus 104 ~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~-~~e~a~~dfl 182 (438)
T KOG0234|consen 104 LHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGK-DQEEALKDFL 182 (438)
T ss_pred HHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCC-CHHHHHHHHH
Confidence 99988 679999999999999999999999 4 689999999999999999999999888899999998 9999999999
Q ss_pred HHHHhhhhccccCCC--C---CeeEEeeccCCCCccceecccccCcCCceeeeeeccCCCCccEEEeccccccCCCCCCc
Q 006920 376 NRLANYEKVYEPVDE--G---SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRI 450 (625)
Q Consensus 376 ~rl~~y~~~fEp~~e--~---~~i~~id~~~~~g~~~~~~~~~g~L~~~~~~~l~n~~~~~~~I~LVRHGes~~n~~~~~ 450 (625)
+|+..|++.|||+++ + +|||+||+ |+++.++++.|||++|||||+||+|..+++|||.||||++.|..++.
T Consensus 183 ~ri~~ye~~YePld~~~d~~lsyik~in~----g~~~~~~~i~~~l~srivy~lmN~~~~pR~i~l~r~geS~~n~~gri 258 (438)
T KOG0234|consen 183 KRIRNYEKYYEPLDRARDKDLSYIKIINV----GEEIVVHNIEGYLQSRIVYYLMNIHTTPRTIYLTRHGESEFNVEGRI 258 (438)
T ss_pred HHHHhhhhccCcCChhhccccceEEEecc----cceEEEecccceehhhhhhhhhccccCCceEEEEecCCCcccccccc
Confidence 999999999999993 3 89999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh-cCCCcccccccccccCCcCCCCCHHHHHhhC
Q 006920 451 GGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI-AGFPKIQWRALDEINAGVCDGMTYEEIKKNM 529 (625)
Q Consensus 451 ~gD~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i-~g~~v~~~~~L~Ei~~G~~eg~~~~ei~~~~ 529 (625)
+||.+|+++|.+.|+.+.+++.+... .--.||||+..||+|||+.+ ....+.++..|+|++.|.|+|++++++.+.+
T Consensus 259 ggds~ls~~g~~ya~~l~~f~~~~~~--~dl~vwts~~~rti~ta~~l~~~~~~~~~~~Ldei~ag~~~g~t~eeI~~~~ 336 (438)
T KOG0234|consen 259 GGDSPLSERGSQYAKSLIKFVEEQSS--SDLDVWTSQRKRTIQTAEGLKLDYSVEQWKALDEIDAGVCEGLTYEEIETNY 336 (438)
T ss_pred CCcccccHHHHHHHHHHHHHHhhhcc--cCceeccchHHHHhhhHhhcCcchhhhhHhhcCcccccccccccHHHHHHhC
Confidence 99999999999999999999987622 22489999999999999955 2333589999999999999999999999999
Q ss_pred hHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEE
Q 006920 530 PEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEI 609 (625)
Q Consensus 530 p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l 609 (625)
|+++.....++++|++|+||||.|+.+|++++|.+|+++.. |+||+|..+|++|++|+++++....+.+.+|.++++.+
T Consensus 337 p~e~~~r~~dky~yry~~gESy~D~v~RlePvImElEr~~~-Vlvi~Hqavircll~Yf~~~~~~e~p~l~~plhtv~~l 415 (438)
T KOG0234|consen 337 PEEFALRDKDKYRYRYPGGESYSDLVQRLEPVIMELERQEN-VLVITHQAVIRCLLAYFLNCSPVELPYLTVPLHTVIKL 415 (438)
T ss_pred chhhhhccCCcceeecCCCCCHHHHHHhhhhHhHhhhhccc-EEEEecHHHHHHHHHHHhcCCHhhcccccccceeEEEE
Confidence 99999999999999999999999999999999999999887 99999999999999999999999999999999999999
Q ss_pred EEcCCeEEEEEEEcCC
Q 006920 610 QMGVTGVQEKRYKLMD 625 (625)
Q Consensus 610 ~~~~~g~~~~r~~l~d 625 (625)
++.++|+.+..+++.+
T Consensus 416 ~~~~y~~~~e~~~~~~ 431 (438)
T KOG0234|consen 416 TPDAYGTTVESIRLND 431 (438)
T ss_pred eeccccceeEEeeccc
Confidence 9999999888887653
No 2
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=100.00 E-value=4.2e-61 Score=552.54 Aligned_cols=389 Identities=29% Similarity=0.532 Sum_probs=340.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 300 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~ 300 (625)
.+..+|+|+|+||+||||+|++|+++|+|.|+++++|+.|.+|+.+.+.. ..+++..+.. ....+++..+++++..
T Consensus 213 ~~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~--~~~~~~~~~~--~~e~~~~~~~~~d~~~ 288 (664)
T PTZ00322 213 MGSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRG--GAVSSPTGAA--EVEFRIAKAIAHDMTT 288 (664)
T ss_pred ccceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCC--CCcCCCCCHH--HHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999998775421 1223333333 2335677778888888
Q ss_pred HHHcCCcEEEEecCCCcHHHHHHHHHH-HcCC----CeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHH
Q 006920 301 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGN----CKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 375 (625)
Q Consensus 301 ~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~----~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~ 375 (625)
|+.+.|.++|+|+||.+..+|..+.+. .+.+ +.++||++.|++.+++++|+.|++...|+ +++++.++|.
T Consensus 289 ~v~~~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~-----~~e~~~~~~~ 363 (664)
T PTZ00322 289 FICKTDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPG-----APEDFVDRYY 363 (664)
T ss_pred HHhcCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHH
Confidence 988878899999999999999877666 5554 47999999999999999999887665554 5888999999
Q ss_pred HHHHhhhhccccCCC----C-CeeEEeeccCCCCccceecccccCcCCceeeeeeccCCCCccEEEeccccccCCCCCCc
Q 006920 376 NRLANYEKVYEPVDE----G-SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRI 450 (625)
Q Consensus 376 ~rl~~y~~~fEp~~e----~-~~i~~id~~~~~g~~~~~~~~~g~L~~~~~~~l~n~~~~~~~I~LVRHGes~~n~~~~~ 450 (625)
+|++.|+..||+.+. + +||++++ |+++.+|+|+|||++||+|||||+|+++|+||||||||+.+|..+++
T Consensus 364 ~~~~~~~~~Ye~~~~~~d~~~~~ik~~~-----g~~~~~~~i~g~l~~~i~~~l~n~~~~~m~i~LiRHGeT~~n~~~r~ 438 (664)
T PTZ00322 364 EVIEQLEAVYKSLNPVTDCDLTYIRIED-----TQTFSLNNISGWMPSRLAYMLHNLNPTPMNLYLTRAGEYVDLLSGRI 438 (664)
T ss_pred HHHHHHHhhcccCCccccCCCceEEEec-----CcEEEEeccccccchhhheeeeeeccCCceEEEEecccchhhhcCcc
Confidence 999999999999652 2 8999644 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc--------------------CCCcccccccc
Q 006920 451 GGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA--------------------GFPKIQWRALD 510 (625)
Q Consensus 451 ~gD~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~--------------------g~~v~~~~~L~ 510 (625)
+||.|||+.|++||++++++|.... ...++.|||||+.||+|||+++. +.++..++.|+
T Consensus 439 ~Gd~pLt~~G~~qA~~l~~~l~~~~-~~~~~~V~sSpl~Ra~~TA~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~L~ 517 (664)
T PTZ00322 439 GGNSRLTERGRAYSRALFEYFQKEI-STTSFTVMSSCAKRCTETVHYFAEESILQQSTASAASSQSPSLNCRVLYFPTLD 517 (664)
T ss_pred CCCCccCHHHHHHHHHHHHHHHhcc-CCCCcEEEcCCcHHHHHHHHHHHhccccccccccccccccccccccccchhhhC
Confidence 9999999999999999999986431 23467999999999999998882 34577889999
Q ss_pred cccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHH-HHHHHHHHHHHcCCCcEEEEechHHHHHHHHHHh
Q 006920 511 EINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVI-QRLEPVIIELERQRAPVVVISHQAVLRALYAYFA 589 (625)
Q Consensus 511 Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~-~Rv~~~i~~L~~~~~~VlIVsHg~vir~Ll~~l~ 589 (625)
|+++|.|+|++++++++.+|+.+..|..+++.+++|+|||+.|+. +|+.++|.++.+..++|||||||++|++++++++
T Consensus 518 Ei~fG~wEG~t~~ei~~~~p~~~~~~~~d~~~~~~P~GES~~d~~~~R~~~~i~~l~~~~~~ilvVsHg~vir~ll~~~~ 597 (664)
T PTZ00322 518 DINHGDCEGQLLSDVRRTMPNTLQSMKADPYYTAWPNGECIHQVFNARLEPHIHDIQASTTPVLVVSHLHLLQGLYSYFV 597 (664)
T ss_pred cCCCcccCCCCHHHHHHhCcHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHHHHHHHHccCCCEEEEeCcHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999976 7999999999888889999999999999999999
Q ss_pred CC-----CCCCCCCcccCCcEEEEEEEcCCeEEEEEEEcC
Q 006920 590 DR-----PLKEIPHIETPLHTIIEIQMGVTGVQEKRYKLM 624 (625)
Q Consensus 590 ~~-----~~~~~~~l~i~~~si~~l~~~~~g~~~~r~~l~ 624 (625)
+. +....+.+.++++++++|.+..++.....+++.
T Consensus 598 ~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~l~ 637 (664)
T PTZ00322 598 TDGDNIVAPQNAYKIDIPFEHVIKIRMVGFNRVAELIDLS 637 (664)
T ss_pred cCCccccCcccCceeeccCCcEEEEEEeccCceEEEEech
Confidence 95 677888999999999999998888888888774
No 3
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=100.00 E-value=2e-43 Score=352.25 Aligned_cols=207 Identities=57% Similarity=0.979 Sum_probs=170.2
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
+..+++|+||||||+|||++|++|+++|.|.|+++.+|+.++||+...+......||+..+.++.+.+++++..+++++.
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~ 88 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLI 88 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred HHHH-cCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHH
Q 006920 300 SWMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 377 (625)
Q Consensus 300 ~~l~-~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~r 377 (625)
.||. ++|+|+|+||||.++++|..+.+. .+.+++++|||+.|++++++++|++..+..+|||.++ +++++.++|.+|
T Consensus 89 ~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~-~~e~A~~Df~~R 167 (222)
T PF01591_consen 89 EWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGM-DPEEAIEDFKKR 167 (222)
T ss_dssp HHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS--HHHHHHHHHHH
T ss_pred HHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccC-CHHHHHHHHHHH
Confidence 9999 789999999999999999999998 8889999999999999999999999998888999999 999999999999
Q ss_pred HHhhhhccccCCC---C--CeeEEeeccCCCCccceecccccCcCCceeeeeeccCCCC
Q 006920 378 LANYEKVYEPVDE---G--SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTP 431 (625)
Q Consensus 378 l~~y~~~fEp~~e---~--~~i~~id~~~~~g~~~~~~~~~g~L~~~~~~~l~n~~~~~ 431 (625)
++.|+++|||+++ . +|||+||. |+++++|+++|||++||||||||+|++|
T Consensus 168 I~~Ye~~YEpl~~e~d~~lsyIKiin~----g~~v~~n~i~GyL~srIv~~LmNlh~~P 222 (222)
T PF01591_consen 168 IEHYEKVYEPLDEEEDEDLSYIKIINV----GEKVIVNNISGYLQSRIVFYLMNLHIKP 222 (222)
T ss_dssp HHHHHTT-----TTTTTTSEEEEEETT----TTEEEEE---SHHHHHHHHHHTT---S-
T ss_pred HHhhcccccccccccccCceEEEEEcC----CceEEEecccCEeHHHHHHHHhhcCCCC
Confidence 9999999999982 2 89999999 9999999999999999999999999864
No 4
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=100.00 E-value=1.7e-34 Score=285.56 Aligned_cols=188 Identities=23% Similarity=0.250 Sum_probs=172.7
Q ss_pred ccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCcccc
Q 006920 432 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 506 (625)
Q Consensus 432 ~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~v~~~ 506 (625)
|+|||||||++.+|..++++| |.|||+.|++||+.+++.|. ..+++.|||||+.||+|||++| .+.++.++
T Consensus 1 ~~i~lvRHG~t~~n~~~~~~G~~d~pLt~~G~~Qa~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 76 (199)
T PRK15004 1 MRLWLVRHGETQANVDGLYSGHAPTPLTARGIEQAQNLHTLLR----DVPFDLVLCSELERAQHTARLVLSDRQLPVHII 76 (199)
T ss_pred CeEEEEeCCCCccccCCcEeCCCCCCcCHHHHHHHHHHHHHHh----CCCCCEEEECchHHHHHHHHHHHhcCCCCceeC
Confidence 579999999999999988888 99999999999999999886 5589999999999999999999 56788999
Q ss_pred cccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEechHHHHHH
Q 006920 507 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRAL 584 (625)
Q Consensus 507 ~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~--~~~VlIVsHg~vir~L 584 (625)
+.|+|+++|.|+|++..++...+|+.+..|..++..+.+|+|||+.++..|+.++++++.+. +++|||||||++|+++
T Consensus 77 ~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~l~~l~~~~~~~~iliVsHg~~i~~l 156 (199)
T PRK15004 77 PELNEMFFGDWEMRHHRDLMQEDAENYAAWCNDWQHAIPTNGEGFQAFSQRVERFIARLSAFQHYQNLLIVSHQGVLSLL 156 (199)
T ss_pred hhheeCCCcccCCCCHHHHHHHCHHHHHHHHhChhhcCCCCCcCHHHHHHHHHHHHHHHHHhCCCCeEEEEcChHHHHHH
Confidence 99999999999999999999999999999999888888999999999999999999999764 5789999999999999
Q ss_pred HHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEEEEEEc
Q 006920 585 YAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYKL 623 (625)
Q Consensus 585 l~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~~r~~l 623 (625)
++++++.+...++.+.+++|+++.|+++..++....++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~ 195 (199)
T PRK15004 157 IARLLGMPAEAMWHFRVEQGCWSAIDINQGFATLRVLNS 195 (199)
T ss_pred HHHHhCCCHHHHhccccCCceEEEEEecCCcEEEEEecc
Confidence 999999999888899999999999999777666666553
No 5
>PRK13463 phosphatase PhoE; Provisional
Probab=100.00 E-value=1.5e-34 Score=286.86 Aligned_cols=189 Identities=23% Similarity=0.337 Sum_probs=172.3
Q ss_pred CccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCccc
Q 006920 431 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 505 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~v~~ 505 (625)
+++|||||||++.+|..++++| |.|||+.|++||+.+++.|. ..+++.|||||+.||+|||+.+ .+.++.+
T Consensus 2 ~~~i~lvRHG~t~~n~~~~~~G~~d~~Lt~~G~~Qa~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 77 (203)
T PRK13463 2 KTTVYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERMK----DLSIHAIYSSPSERTLHTAELIKGERDIPIIA 77 (203)
T ss_pred ceEEEEEeCCCCccchhCcccCCCCCCcCHHHHHHHHHHHHHhc----CCCCCEEEECCcHHHHHHHHHHHhcCCCCceE
Confidence 4789999999999999998888 99999999999999998876 5589999999999999999999 5678999
Q ss_pred ccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEechHHHHH
Q 006920 506 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRA 583 (625)
Q Consensus 506 ~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~--~~~VlIVsHg~vir~ 583 (625)
++.|+|+++|.|+|++..++.+.+|+.+..|+.++..+.+|+|||+.++.+|+..+++++.+. +++|||||||++|++
T Consensus 78 ~~~l~E~~~G~~eG~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~l~~i~~~~~~~~vlvVsHg~~ir~ 157 (203)
T PRK13463 78 DEHFYEINMGIWEGQTIDDIERQYPDDIQLFWNEPHLFQSTSGENFEAVHKRVIEGMQLLLEKHKGESILIVSHAAAAKL 157 (203)
T ss_pred CcCceeCCCCccCCCcHHHHhhhCHHHHHHHHhChhccCCCCCeEHHHHHHHHHHHHHHHHHhCCCCEEEEEeChHHHHH
Confidence 999999999999999999999999999999999998999999999999999999999998654 568999999999999
Q ss_pred HHHHHhCCCCCCCCCc-ccCCcEEEEEEEcCCeEEEEEEEc
Q 006920 584 LYAYFADRPLKEIPHI-ETPLHTIIEIQMGVTGVQEKRYKL 623 (625)
Q Consensus 584 Ll~~l~~~~~~~~~~l-~i~~~si~~l~~~~~g~~~~r~~l 623 (625)
+++++++.+.+..+.+ .+++++++.++++..++...+++-
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~ 198 (203)
T PRK13463 158 LVGHFAGIEIENVWDDPFMHSASLSIIEFEDGKGEVKQFAD 198 (203)
T ss_pred HHHHHhCCCHHHHhhccCccCceEEEEEEeCCcEEEEEecc
Confidence 9999999998887765 468999999999777777777764
No 6
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=2.1e-34 Score=290.94 Aligned_cols=188 Identities=22% Similarity=0.266 Sum_probs=165.0
Q ss_pred CccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc---C---CC
Q 006920 431 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---G---FP 502 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~---g---~~ 502 (625)
|++|||||||++.+|..++++| |.|||+.|++||+.+++.|... ..+++.|||||+.||+|||+.|. + .+
T Consensus 1 m~~l~LVRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpL~Ra~qTA~~i~~~~~~~~~~ 78 (228)
T PRK14116 1 MAKLVLIRHGQSEWNLSNQFTGWVDVDLSEKGVEEAKKAGRLIKEA--GLEFDQAYTSVLTRAIKTLHYALEESDQLWIP 78 (228)
T ss_pred CCEEEEEeCCCCCCccccCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCcCCCC
Confidence 4789999999999999999999 9999999999999999998743 35799999999999999999982 2 56
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCc------------------------cCCCCCCCCCHHHHHHH
Q 006920 503 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQR 557 (625)
Q Consensus 503 v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~~------------------------~~~~~p~gES~~d~~~R 557 (625)
+.+++.|+|+++|.|+|++.+++.+.+|+. +..|..+. ..+.+|+|||+.++.+|
T Consensus 79 ~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgGEs~~~~~~R 158 (228)
T PRK14116 79 ETKTWRLNERHYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLDADDEGSAAKDRRYANLDPRIIPGGENLKVTLER 158 (228)
T ss_pred cccCcccccccchhhcCCCHHHHHHHhhhhHHHHHhhcccccCcccccccccccccchhhhccCccCCCCCCCHHHHHHH
Confidence 788999999999999999999999999986 66666531 13467999999999999
Q ss_pred HHHHHHHHHc----CCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEEEE
Q 006920 558 LEPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKR 620 (625)
Q Consensus 558 v~~~i~~L~~----~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~~r 620 (625)
+.+++.++.. .+++|||||||++|+++++++++.+...++.+.+++|+++.|+++..+....+
T Consensus 159 v~~~l~~~i~~~~~~~~~vlvVsHg~vir~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (228)
T PRK14116 159 VIPFWEDHIAPDLLDGKNVIIAAHGNSLRALTKYIENISDEDIMNLEMATGEPVVYDFDEKLNVVSK 225 (228)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEcChHHHHHHHHHHhCCCHHHHHhccCCCCCeEEEEECCCCCcccc
Confidence 9999988642 36789999999999999999999999999999999999999999887655443
No 7
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=9e-34 Score=286.62 Aligned_cols=190 Identities=22% Similarity=0.195 Sum_probs=166.4
Q ss_pred CccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc------CCC
Q 006920 431 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFP 502 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~------g~~ 502 (625)
|++|||||||++.+|..++++| |.|||+.|++||+.+++.|... ..+++.|||||++||+|||+.+. +.+
T Consensus 1 m~~l~LvRHG~t~~n~~~~~qG~~D~~Lt~~G~~qa~~~~~~l~~~--~~~~~~i~sSpl~Ra~~TA~~i~~~~~~~~~~ 78 (230)
T PRK14117 1 MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEA--GIEFDLAFTSVLKRAIKTTNLALEASDQLWVP 78 (230)
T ss_pred CCEEEEEeCccccCcccCCcCCCCCCCcCHHHHHHHHHHHHHHHHc--CCCCCEEEECCcHHHHHHHHHHHHhcccCCCC
Confidence 5789999999999999999999 9999999999999999998743 35789999999999999999872 367
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcC------------------------ccCCCCCCCCCHHHHHHH
Q 006920 503 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKD------------------------KLRYRYPRGESYLDVIQR 557 (625)
Q Consensus 503 v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~------------------------~~~~~~p~gES~~d~~~R 557 (625)
+.+++.|+|+++|.|+|++..++.+.+|+. +..|..+ ...+++|+|||+.++.+|
T Consensus 79 ~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~R 158 (230)
T PRK14117 79 VEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYSAHTDRRYASLDDSVIPDAENLKVTLER 158 (230)
T ss_pred ceeCCccccccchhhcCCCHHHHHHHccHHHHHHHhcccccCCCcccccccccccccccccccccCCCCCCCCHHHHHHH
Confidence 888999999999999999999999999986 4556543 123467899999999999
Q ss_pred HHHHHHHHH-c---CCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEEEEEE
Q 006920 558 LEPVIIELE-R---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYK 622 (625)
Q Consensus 558 v~~~i~~L~-~---~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~~r~~ 622 (625)
+.++++++. . .+++|||||||++|+++++++++.+....+.+.++||+++.|+++.......+|-
T Consensus 159 v~~~l~~~~~~~~~~~~~vlvVsHg~~ir~ll~~~lg~~~~~~~~~~~~n~s~~~i~~~~~~~~~~~~~ 227 (230)
T PRK14117 159 ALPFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKGLSDDEIMDVEIPNFPPLVFEFDEKLNVVKEYY 227 (230)
T ss_pred HHHHHHHHHHhhccCCCEEEEEeChHHHHHHHHHHhCcCHHHHhhcCCCCceEEEEEECCCCceeeccc
Confidence 999999974 2 2578999999999999999999999998888999999999999988777776654
No 8
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=6.6e-34 Score=287.30 Aligned_cols=189 Identities=23% Similarity=0.269 Sum_probs=163.3
Q ss_pred CccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc------CCC
Q 006920 431 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFP 502 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~------g~~ 502 (625)
|++||||||||+.+|..++++| |.|||+.|++||+++++.|... ..+++.|||||++||+|||+.|. +.+
T Consensus 1 m~~l~LvRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpL~Ra~~TA~~i~~~~~~~~~~ 78 (228)
T PRK14119 1 MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVREN--NIAIDVAFTSLLTRALDTTHYILTESKQQWIP 78 (228)
T ss_pred CCEEEEEeCCCCCcccCCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEeCccHHHHHHHHHHHHhcccCCCC
Confidence 4689999999999999999998 9999999999999999988753 35799999999999999999993 257
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCcc------------------------CCCCCCCCCHHHHHHH
Q 006920 503 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQR 557 (625)
Q Consensus 503 v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~~~------------------------~~~~p~gES~~d~~~R 557 (625)
+.+++.|+|+++|.|+|++.+++++.+|+. +..|..+.. ...+|+|||+.++.+|
T Consensus 79 ~~~~~~LrE~~fG~weG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~R 158 (228)
T PRK14119 79 VYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVR 158 (228)
T ss_pred eeECCCccccccccccCCcHHHHHHHccHHHHHHHHcccccCCCcccccccccccccccccccccccCCCCCCHHHHHHH
Confidence 788999999999999999999999999986 556654421 1236899999999999
Q ss_pred HHHHHHHHHc----CCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEEEEE
Q 006920 558 LEPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRY 621 (625)
Q Consensus 558 v~~~i~~L~~----~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~~r~ 621 (625)
+.++++++.. .+++|||||||++|+++++++++.+.+..+.+.+++|+++.++.+...-...+|
T Consensus 159 v~~~l~~~~~~~~~~~~~vlvVsHg~vir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (228)
T PRK14119 159 VIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVIDKY 226 (228)
T ss_pred HHHHHHHHHHhhccCCCeEEEEeChHHHHHHHHHHhCCCHHHHhhcCCCCCceEEEEECCCCceeccc
Confidence 9999998743 357899999999999999999999999888999999999999997764444333
No 9
>PRK01112 phosphoglyceromutase; Provisional
Probab=100.00 E-value=1.4e-33 Score=284.72 Aligned_cols=186 Identities=26% Similarity=0.247 Sum_probs=168.6
Q ss_pred CccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc---------
Q 006920 431 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA--------- 499 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~--------- 499 (625)
|++||||||||+.+|..+.++| |.|||+.|++||+.++++|. ..+++.|||||+.||+|||+.|.
T Consensus 1 M~~L~LvRHGqt~~n~~~~~~G~~D~~Lte~G~~Qa~~l~~~L~----~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~ 76 (228)
T PRK01112 1 MALLILLRHGQSVWNAKNLFTGWVDIPLSQQGIAEAIAAGEKIK----DLPIDCIFTSTLVRSLMTALLAMTNHSSGKIP 76 (228)
T ss_pred CcEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHhh----cCCCCEEEEcCcHHHHHHHHHHHHhhcccccc
Confidence 5789999999999999999888 99999999999999999887 45899999999999999999883
Q ss_pred -----------------------CCCcccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHH
Q 006920 500 -----------------------GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQ 556 (625)
Q Consensus 500 -----------------------g~~v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~ 556 (625)
..++...+.|+|+++|.|+|++++++.+.+|+.+..|+.+++.+++|+|||+.|+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~GES~~d~~~ 156 (228)
T PRK01112 77 YIVHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGKNKAETAEKFGEEQVKLWRRSYKTAPPQGESLEDTGQ 156 (228)
T ss_pred cccccccccccccccccccccccCCCeeecCccccccccccCCCCHHHHHHHCcHHHHHHHhCcCCCCCCCCCCHHHHHH
Confidence 135667899999999999999999999999988888778788889999999999999
Q ss_pred HHHHHHHHHH-c---CCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEEEE
Q 006920 557 RLEPVIIELE-R---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKR 620 (625)
Q Consensus 557 Rv~~~i~~L~-~---~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~~r 620 (625)
|+.++++++. + .+++|+|||||++|+++++++++.+.+.++.+.+++++++.++++..+.+.+.
T Consensus 157 Rv~~~l~~~~~~~~~~~~~ilVVsHg~vir~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (228)
T PRK01112 157 RTLPYFQNRILPHLQQGKNVFVSAHGNSLRSLIMDLEKLSEEEVLSLELPTGKPIVYEWTGQKFEKHK 224 (228)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhhcccCCcceEEEEECCCCcccch
Confidence 9999999752 2 46789999999999999999999999999999999999999999988877643
No 10
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=4.1e-33 Score=281.30 Aligned_cols=181 Identities=20% Similarity=0.234 Sum_probs=159.0
Q ss_pred ccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc------CCCc
Q 006920 432 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFPK 503 (625)
Q Consensus 432 ~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~------g~~v 503 (625)
|+|||||||++.+|..++++| |.|||+.|++||+.+++.|.+. ..+++.|||||+.||+|||+.|. +.++
T Consensus 1 m~l~LvRHG~t~~n~~~~~~G~~d~~Lt~~G~~qa~~~~~~l~~~--~~~~d~i~sSpl~Ra~~TA~~i~~~~~~~~~~~ 78 (227)
T PRK14118 1 MELVFIRHGFSEWNAKNLFTGWRDVNLTERGVEEAKAAGKKLKEA--GYEFDIAFTSVLTRAIKTCNIVLEESNQLWIPQ 78 (227)
T ss_pred CEEEEEecCCCccccccCcCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEEeChHHHHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999998 9999999999999999998753 35789999999999999999992 2567
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCc------------------------cCCCCCCCCCHHHHHHHH
Q 006920 504 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQRL 558 (625)
Q Consensus 504 ~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~~------------------------~~~~~p~gES~~d~~~Rv 558 (625)
.+++.|+|+++|.|+|++.+++.+.+|+. +..|..+. ..+.+|+|||+.++.+|+
T Consensus 79 ~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~Rv 158 (227)
T PRK14118 79 VKNWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDPNSAHNDRRYAHLPADVVPDAENLKVTLERV 158 (227)
T ss_pred ecCCccccccCccccCCcHHHHHHHhhHHHHHHHHhccccCCCccccccccccccchhhccCcCCCCCCCCCHHHHHHHH
Confidence 88899999999999999999999999976 44554431 124579999999999999
Q ss_pred HHHHHHHHc----CCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCC
Q 006920 559 EPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT 614 (625)
Q Consensus 559 ~~~i~~L~~----~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~ 614 (625)
.++++++.. .+++|||||||++|+++++++++.+...++.+.+++|+++.|+++..
T Consensus 159 ~~~l~~~~~~~~~~~~~vlvVsHggvir~ll~~~l~~~~~~~~~~~i~~~s~~~~~~~~~ 218 (227)
T PRK14118 159 LPFWEDQIAPALLSGKRVLVAAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYKLDDN 218 (227)
T ss_pred HHHHHHHHhhhhcCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhcccCCCCceEEEEECCC
Confidence 999988653 36789999999999999999999999988999999999999999765
No 11
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=100.00 E-value=8.6e-33 Score=274.28 Aligned_cols=185 Identities=25% Similarity=0.269 Sum_probs=166.0
Q ss_pred cEEEeccccccCCCCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCcccc
Q 006920 433 PILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 506 (625)
Q Consensus 433 ~I~LVRHGes~~n~~~~~~g---D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~v~~~ 506 (625)
+||||||||+.+|..+.++| |.|||+.|++||+++++.|. ..+++.|||||+.||+|||++| .+.++.++
T Consensus 1 ~i~lvRHG~t~~n~~~~~~g~~~d~~Lt~~G~~qa~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 76 (204)
T TIGR03848 1 TVILVRHGRSTANTAGTLAGRTPGVDLDERGREQAAALAERLA----DLPIAAIVSSPLERCRETAEPIAEARGLPPRVD 76 (204)
T ss_pred CEEEEeCCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEeCcHHHHHHHHHHHHHhcCCCceEC
Confidence 58999999999999888887 48999999999999999886 4589999999999999999999 57789999
Q ss_pred cccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHc-------CCCcEEEEechH
Q 006920 507 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER-------QRAPVVVISHQA 579 (625)
Q Consensus 507 ~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~-------~~~~VlIVsHg~ 579 (625)
+.|+|+++|.|+|++.+++.+. ..+..|..++..+.+|+|||+.++..|+..+++++.+ .+++|||||||+
T Consensus 77 ~~L~E~~~G~~eG~~~~e~~~~--~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~ 154 (204)
T TIGR03848 77 ERLGECDYGDWTGRELKELAKE--PLWPVVQAHPSAAVFPGGESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGD 154 (204)
T ss_pred cccccCCCCeeCCcCHHHHhCc--HHHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCh
Confidence 9999999999999999998754 3566787788888899999999999999999998753 246799999999
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEEEEEEc
Q 006920 580 VLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYKL 623 (625)
Q Consensus 580 vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~~r~~l 623 (625)
+|+++++++++.+.+..+.+.+++|++++|++..+++....++-
T Consensus 155 ~ir~ll~~~lg~~~~~~~~~~~~n~sit~l~~~~~~~~~~~~n~ 198 (204)
T TIGR03848 155 VIKSVLADALGMHLDLFQRIVVDPCSVSVVRYTPLRPFVLRVND 198 (204)
T ss_pred HHHHHHHHHhCCCHHHhheeeeCCCeEEEEEEeCCceEEEEeec
Confidence 99999999999999988899999999999999888887776663
No 12
>PRK03482 phosphoglycerate mutase; Provisional
Probab=100.00 E-value=1.4e-32 Score=274.98 Aligned_cols=188 Identities=23% Similarity=0.232 Sum_probs=161.6
Q ss_pred CccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCccc
Q 006920 431 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 505 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~v~~ 505 (625)
|++|||||||++.+|..+.++| |.|||+.|++||+.+++.|. ..+++.|||||+.||+|||++| ++.++.+
T Consensus 1 m~~i~lvRHG~t~~n~~~~~~g~~d~~Lt~~G~~qA~~~~~~l~----~~~~~~I~sSpl~Ra~qTA~~i~~~~~~~~~~ 76 (215)
T PRK03482 1 MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVAERAK----ELGITHIISSDLGRTRRTAEIIAQACGCDIIF 76 (215)
T ss_pred CcEEEEEeCCCcccccccccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEECCcHHHHHHHHHHHHhcCCCeeE
Confidence 5789999999999999888877 99999999999999999886 4578999999999999999999 6778899
Q ss_pred ccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEechHHHHH
Q 006920 506 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRA 583 (625)
Q Consensus 506 ~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~--~~~VlIVsHg~vir~ 583 (625)
++.|+|+++|.|+|++.+++...++.....+...+..+.+|+|||+.++..|+..+++++.+. +++|||||||++|++
T Consensus 77 ~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~Rv~~~l~~~~~~~~~~~vliVsHg~~i~~ 156 (215)
T PRK03482 77 DPRLRELNMGVLEKRHIDSLTEEEEGWRRQLVNGTVDGRIPEGESMQELSDRMHAALESCLELPQGSRPLLVSHGIALGC 156 (215)
T ss_pred ChhccccCCccccCCcHHHHHhhHHHHHHhhhcCCCccCCCCCccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHH
Confidence 999999999999999999886554322222333455677899999999999999999998653 568999999999999
Q ss_pred HHHHHhCCCCCCCCCcccCCcEEEEEEEcC-----CeEEEEEEE
Q 006920 584 LYAYFADRPLKEIPHIETPLHTIIEIQMGV-----TGVQEKRYK 622 (625)
Q Consensus 584 Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~-----~g~~~~r~~ 622 (625)
+++++++.+.+..+.+.++||+++.|++.. .+|....++
T Consensus 157 l~~~l~~~~~~~~~~~~~~n~sis~~~~~~~~~~~~~~~~~~~n 200 (215)
T PRK03482 157 LVSTILGLPAWAERRLRLRNCSISRVDYQESPWLASGWVVETAG 200 (215)
T ss_pred HHHHHhCCChhhhhccCCCCcEEEEEEEeCCccccceEEEEeeC
Confidence 999999999988888899999999998865 356665543
No 13
>PRK01295 phosphoglyceromutase; Provisional
Probab=100.00 E-value=9.3e-33 Score=274.72 Aligned_cols=182 Identities=25% Similarity=0.295 Sum_probs=162.2
Q ss_pred CccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CC
Q 006920 431 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 502 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g---~~ 502 (625)
+++|||||||++.+|..+.++| |.|||+.|++||+.+++.|... ..+++.|||||+.||+|||++| ++ .+
T Consensus 2 ~~~i~LVRHGet~~n~~~~~~G~~d~~Lt~~G~~qA~~~~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 79 (206)
T PRK01295 2 SRTLVLVRHGQSEWNLKNLFTGWRDPDLTEQGVAEAKAAGRKLKAA--GLKFDIAFTSALSRAQHTCQLILEELGQPGLE 79 (206)
T ss_pred CceEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEeCCcHHHHHHHHHHHHHcCCCCCC
Confidence 4789999999999999998888 9999999999999999998753 4579999999999999999999 33 67
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHH-HHHHc---CCCcEEEEech
Q 006920 503 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVI-IELER---QRAPVVVISHQ 578 (625)
Q Consensus 503 v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i-~~L~~---~~~~VlIVsHg 578 (625)
+.+++.|+|+++|.|+|++.+++++.+|+....|+.++..+++|+|||+.|+.+|+..++ +.+.. .+++|||||||
T Consensus 80 ~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVtHg 159 (206)
T PRK01295 80 TIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVLPYYLQEILPRVLRGERVLVAAHG 159 (206)
T ss_pred eEECCcccccccccccCCcHHHHHHHchHHHHHHhhcccCCCCcCCCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEcCh
Confidence 889999999999999999999999999987777666667889999999999999999974 55533 46789999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCC
Q 006920 579 AVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT 614 (625)
Q Consensus 579 ~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~ 614 (625)
++|+++++++++.+.+.++.+.+.+++++.+.++..
T Consensus 160 ~~ir~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (206)
T PRK01295 160 NSLRALVMVLDGLTPEQILKLELATGVPIVYRLNAD 195 (206)
T ss_pred HHHHHHHHHHhCCCHHHHhhcCCCCCCcEEEEecCC
Confidence 999999999999999999999999998888877654
No 14
>PRK13462 acid phosphatase; Provisional
Probab=100.00 E-value=1.6e-32 Score=272.36 Aligned_cols=185 Identities=23% Similarity=0.275 Sum_probs=161.5
Q ss_pred CCCCccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCC--EEEEcCcHHHHHHHHHhcCCCc
Q 006920 428 HLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAA--SIWTSTLQRTILTASPIAGFPK 503 (625)
Q Consensus 428 ~~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~--~I~sSpl~Ra~qTA~~i~g~~v 503 (625)
...+++||||||||+.+|..++++| |.|||+.|++||+++++.|... +++ .|||||+.||+|||+.+ +.++
T Consensus 2 ~~~~~~i~LvRHG~t~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~----~~~~~~i~sSpl~Ra~qTA~~i-~~~~ 76 (203)
T PRK13462 2 GVRNHRLLLLRHGETEWSKSGRHTGRTELELTETGRTQAELAGQALGEL----ELDDPLVISSPRRRALDTAKLA-GLTV 76 (203)
T ss_pred CccccEEEEEeCCCCCcccCCCccCCCCCCCCHHHHHHHHHHHHHHHhC----CCCCCEEEECchHHHHHHHHHh-cCcc
Confidence 3567899999999999999988888 9999999999999999988643 455 79999999999999998 5544
Q ss_pred -ccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEechHH
Q 006920 504 -IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAV 580 (625)
Q Consensus 504 -~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~--~~~VlIVsHg~v 580 (625)
..++.|+|+++|.|+|++..++.+.+|+ +..|. ..+|+|||+.++.+|+..+++++.+. +++|||||||++
T Consensus 77 ~~~~~~LrE~~~G~~eG~~~~ei~~~~~~-~~~~~-----~~~p~gES~~~~~~Rv~~~l~~i~~~~~~~~vliVsHg~v 150 (203)
T PRK13462 77 DEVSGLLAEWDYGSYEGLTTPQIRESEPD-WLVWT-----HGCPGGESVAQVNERADRAVALALEHMESRDVVFVSHGHF 150 (203)
T ss_pred cccCccccccCCccccCCcHHHHHHhCch-HHhhc-----CCCCCCccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCHH
Confidence 6789999999999999999999999986 33443 34589999999999999999998654 578999999999
Q ss_pred HHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEEEEEEc
Q 006920 581 LRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYKL 623 (625)
Q Consensus 581 ir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~~r~~l 623 (625)
|+++++++++.+....+.+.+++++++.|++.........++.
T Consensus 151 ir~ll~~~l~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~ 193 (203)
T PRK13462 151 SRAVITRWVELPLAEGSRFAMPTASIAICGFEHGVRQLSALGL 193 (203)
T ss_pred HHHHHHHHhCCCHHHhhhcccCCceEEEEEeeCCceEEEeecc
Confidence 9999999999998888889999999999999777666665543
No 15
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=2.1e-32 Score=279.23 Aligned_cols=192 Identities=26% Similarity=0.298 Sum_probs=168.3
Q ss_pred ccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CCc
Q 006920 432 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 503 (625)
Q Consensus 432 ~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g---~~v 503 (625)
|+|||||||++.+|..++++| |.|||+.|++||+.+++.|... ..+++.|||||++||+|||+.| ++ .++
T Consensus 1 ~~i~LVRHGqt~~n~~~~~~G~~D~pLte~G~~QA~~la~~L~~~--~~~~d~IysSpl~Ra~qTA~~i~~~~~~~~~~~ 78 (247)
T PRK14115 1 TKLVLIRHGESQWNKENRFTGWTDVDLSEKGVSEAKAAGKLLKEE--GYTFDVAYTSVLKRAIRTLWIVLDELDQMWLPV 78 (247)
T ss_pred CEEEEEECCCcccccccCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEEcCCHHHHHHHHHHHHHcCCCCCCc
Confidence 579999999999999998888 9999999999999999998753 4578999999999999999999 34 367
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCcc------------------------CCCCCCCCCHHHHHHHH
Q 006920 504 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQRL 558 (625)
Q Consensus 504 ~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~~~------------------------~~~~p~gES~~d~~~Rv 558 (625)
.+++.|+|+++|.|+|++.+++.+.+|+. +..|..... .+.+|+|||+.++..|+
T Consensus 79 ~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv 158 (247)
T PRK14115 79 EKSWRLNERHYGALQGLNKAETAAKYGDEQVKIWRRSYDVPPPALEKDDERYPGHDPRYAKLPEEELPLTESLKDTIARV 158 (247)
T ss_pred eECccccccccccccCCCHHHHHHHhhHHHHHHHhcccccCCCcccccccccccccchhhcccCCCCCCCCcHHHHHHHH
Confidence 88999999999999999999999999976 555554211 23478999999999999
Q ss_pred HHHHHHHHc----CCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEEEEEEcCC
Q 006920 559 EPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYKLMD 625 (625)
Q Consensus 559 ~~~i~~L~~----~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~~r~~l~d 625 (625)
.++|+++.. .+++|||||||++|+++++++++.+....+.+.+++++++.|+++......++|-+-|
T Consensus 159 ~~~l~~~i~~~~~~~~~vlvVtHggvir~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 229 (247)
T PRK14115 159 LPYWNETIAPQLKSGKRVLIAAHGNSLRALVKYLDNISDEEILELNIPTGVPLVYELDENLKPIKHYYLGD 229 (247)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeChHHHHHHHHHHhCCCHHHhheeecCCCceEEEEECCCCcEeeeEecCC
Confidence 999988632 4678999999999999999999999998899999999999999999888888887644
No 16
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=2e-32 Score=279.60 Aligned_cols=184 Identities=24% Similarity=0.289 Sum_probs=161.3
Q ss_pred CCCccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc------C
Q 006920 429 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------G 500 (625)
Q Consensus 429 ~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~------g 500 (625)
|.|++|||||||++.+|..++++| |.|||+.|++||+.+++.|... ...++.|||||+.||+|||+.|. +
T Consensus 2 ~~m~~i~LVRHGqt~~n~~~~~~G~~D~pLTe~G~~QA~~~a~~l~~~--~~~~~~IysSpl~Ra~qTA~~i~~~~~~~~ 79 (249)
T PRK14120 2 MMTYTLVLLRHGESEWNAKNLFTGWVDVDLTEKGEAEAKRGGELLAEA--GVLPDVVYTSLLRRAIRTANLALDAADRLW 79 (249)
T ss_pred CCCcEEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEecChHHHHHHHHHHHHhcccCC
Confidence 456889999999999999999988 9999999999999999998743 34689999999999999999982 3
Q ss_pred CCcccccccccccCCcCCCCCHHHHHhhChH-HHHHHhcCccCC----------------------CCCCCCCHHHHHHH
Q 006920 501 FPKIQWRALDEINAGVCDGMTYEEIKKNMPE-EYEARKKDKLRY----------------------RYPRGESYLDVIQR 557 (625)
Q Consensus 501 ~~v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~-~~~~~~~~~~~~----------------------~~p~gES~~d~~~R 557 (625)
.++.+++.|+|+++|.|+|++..++++++|+ .+..|..+.... .+|+|||+.++.+|
T Consensus 80 ~~i~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~GES~~~~~~R 159 (249)
T PRK14120 80 IPVRRSWRLNERHYGALQGKDKAETKAEYGEEQFMLWRRSYDTPPPPIEDGSEYSQDNDPRYADLGVGPRTECLKDVVAR 159 (249)
T ss_pred CCeEECCCcccccccccCCCCHHHHHHHccHHHHHHHHhccccCCCccccccccccccCccccccCCCCCCCCHHHHHHH
Confidence 5788899999999999999999999999997 477787653222 24899999999999
Q ss_pred HHHHHHHH--H--cCCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCC
Q 006920 558 LEPVIIEL--E--RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT 614 (625)
Q Consensus 558 v~~~i~~L--~--~~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~ 614 (625)
+..+|+++ . ..+++|||||||++|+++++++++++.+..+.+.+++|+++.|+++..
T Consensus 160 v~~~l~~~~~~~~~~~~~iliVsHggvir~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 220 (249)
T PRK14120 160 FLPYWEDDIVPDLKAGKTVLIAAHGNSLRALVKHLDGISDEDIAGLNIPTGIPLVYELDED 220 (249)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeCHHHHHHHHHHHhCCCHHHhheeccCCCceEEEEECCC
Confidence 99999874 2 246789999999999999999999999999999999999999998653
No 17
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=100.00 E-value=3.2e-32 Score=270.56 Aligned_cols=183 Identities=33% Similarity=0.452 Sum_probs=171.7
Q ss_pred CccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCccc
Q 006920 431 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 505 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~v~~ 505 (625)
+++||||||||+.+|..++++| |.|||+.|++||+.+++.|... ...++.|||||+.||+|||+++ ++.++..
T Consensus 2 ~~~i~lvRHGqt~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~--~~~~~~i~sS~l~Ra~~TA~~~a~~~~~~~~~ 79 (208)
T COG0406 2 MMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAAR--DIGFDAIYSSPLKRAQQTAEPLAEELGLPLEV 79 (208)
T ss_pred ceEEEEEecCCccccccccccCCCCCCCCHHHHHHHHHHHHHHhhc--CCCCCEEEECchHHHHHHHHHHHHhcCCCcee
Confidence 6899999999999999999988 9999999999999999998754 5689999999999999999999 6777899
Q ss_pred ccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcCCC--cEEEEechHHHHH
Q 006920 506 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRA--PVVVISHQAVLRA 583 (625)
Q Consensus 506 ~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~~~--~VlIVsHg~vir~ 583 (625)
++.|+|+++|.|+|++..++.+.+|..+..|..+++.+.+|+|||+.++..|+..++.++.+... +|+|||||++|++
T Consensus 80 ~~~l~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg~~ir~ 159 (208)
T COG0406 80 DDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPPGGESLADVSKRVVAALAELLRSPPGNNVLVVSHGGVIRA 159 (208)
T ss_pred cCCeeEeecccccCCcHHHHHHhCHHHHHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988633 6999999999999
Q ss_pred HHHHHhCCCCCCCCCcccCCcEEEEEEEcCCe
Q 006920 584 LYAYFADRPLKEIPHIETPLHTIIEIQMGVTG 615 (625)
Q Consensus 584 Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g 615 (625)
|++++++.+....+.+.+++++++.+++..++
T Consensus 160 l~~~~~~~~~~~~~~~~~~~~si~~l~~~~~~ 191 (208)
T COG0406 160 LLAYLLGLDLEELWRLRLDNASVTVLEFDDGR 191 (208)
T ss_pred HHHHhcCCChhhHHhcCCCCceEEEEEeeCCC
Confidence 99999999888778899999999999998876
No 18
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=100.00 E-value=4.5e-32 Score=276.52 Aligned_cols=190 Identities=26% Similarity=0.297 Sum_probs=164.5
Q ss_pred ccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CCc
Q 006920 432 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 503 (625)
Q Consensus 432 ~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g---~~v 503 (625)
|+||||||||+.+|..++++| |.|||+.|++||+.+++.|... ..+++.|||||++||+|||++| ++ .++
T Consensus 1 ~~l~lVRHGqt~~n~~~~~~G~~D~~Lt~~G~~QA~~la~~L~~~--~~~~d~iysSpl~Ra~qTA~ii~~~~~~~~~~i 78 (245)
T TIGR01258 1 MKLVLVRHGESEWNALNLFTGWVDVKLSEKGQQEAKRAGELLKEE--GYEFDVAYTSLLKRAIHTLNIALDELDQLWIPV 78 (245)
T ss_pred CEEEEEeCCCcCccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEEcChHHHHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999988 9999999999999999998743 4578999999999999999999 33 567
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCcc------------------CC------CCCCCCCHHHHHHHH
Q 006920 504 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------RY------RYPRGESYLDVIQRL 558 (625)
Q Consensus 504 ~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~~~------------------~~------~~p~gES~~d~~~Rv 558 (625)
..++.|+|+++|.|+|++.+++.+.+|+. +..|..+.. .| .+|+|||+.++.+|+
T Consensus 79 ~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~d~~y~~~~~~~~p~GES~~~~~~Rv 158 (245)
T TIGR01258 79 KKSWRLNERHYGALQGLNKAETAAKYGEEQVNIWRRSFDVPPPPIDESDPRSPHNDPRYAHLDPKVLPLTESLKDTIARV 158 (245)
T ss_pred eeCcccccccCCCCcCCCHHHHHHHhhHHHHHHHHhhccCCCCcCCcccccccccChhhhcCCcccCCCCCCHHHHHHHH
Confidence 78899999999999999999999999976 445543311 12 278999999999999
Q ss_pred HHHHHHHHc----CCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEEEEEEc
Q 006920 559 EPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYKL 623 (625)
Q Consensus 559 ~~~i~~L~~----~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~~r~~l 623 (625)
..+|+++.. .+++|||||||++|+++++++++++....+.+.+++|+++.++++...-..+.|.+
T Consensus 159 ~~~l~~l~~~~~~~~~~vlvVsHg~vir~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (245)
T TIGR01258 159 LPYWNDEIAPDLLSGKRVLIVAHGNSLRALVKHLEGISDEEILELNIPTGIPLVYELDENLKPIKHYYL 227 (245)
T ss_pred HHHHHHHHhhhhcCCCEEEEEcChHHHHHHHHHHHCcCHHHHhheecCCCceEEEEECCCCCEeeeeec
Confidence 999998753 35789999999999999999999999999999999999999999777666666655
No 19
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=100.00 E-value=1.9e-32 Score=265.04 Aligned_cols=170 Identities=29% Similarity=0.410 Sum_probs=157.5
Q ss_pred EEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCcccccc
Q 006920 434 ILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWRA 508 (625)
Q Consensus 434 I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~v~~~~~ 508 (625)
||||||||+.+|..+.+ | |.|||+.|++||+.+++.|. ..+++.|||||+.||+|||+.+ ++.++.+++.
T Consensus 1 i~lvRHg~t~~n~~~~~-g~~d~~Lt~~G~~qa~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~ 75 (177)
T TIGR03162 1 LYLIRHGETDVNAGLCY-GQTDVPLAEKGAEQAAALREKLA----DVPFDAVYSSPLSRCRELAEILAERRGLPIIKDPR 75 (177)
T ss_pred CEEEeCCCCccCCCcee-CCCCCCcChhHHHHHHHHHHHhc----CCCCCEEEECchHHHHHHHHHHHhhcCCCceECCc
Confidence 69999999999998887 5 99999999999999998875 5689999999999999999999 5678999999
Q ss_pred cccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEechHHHHHHHH
Q 006920 509 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRALYA 586 (625)
Q Consensus 509 L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~--~~~VlIVsHg~vir~Ll~ 586 (625)
|+|+++|.|+|++.+++.+.+| .+..|..++..+.+|+|||+.++.+|+.+++.++.++ +++|||||||++|+++++
T Consensus 76 L~E~~~G~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~l~~~~~~~~vlvVsHg~~i~~l~~ 154 (177)
T TIGR03162 76 LREMDFGDWEGRSWDEIPEAYP-ELDAWAADWQHARPPGGESFADFYQRVSEFLEELLKAHEGDNVLIVTHGGVIRALLA 154 (177)
T ss_pred cccccCCccCCCCHHHHHHhCH-HHHHHHhCcccCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHH
Confidence 9999999999999999999998 6788988888889999999999999999999999764 578999999999999999
Q ss_pred HHhCCCCCCCCCcccCCcEEEEE
Q 006920 587 YFADRPLKEIPHIETPLHTIIEI 609 (625)
Q Consensus 587 ~l~~~~~~~~~~l~i~~~si~~l 609 (625)
++++.+.+..+.+.++||++++|
T Consensus 155 ~~~~~~~~~~~~~~~~n~~i~~l 177 (177)
T TIGR03162 155 HLLGLPLEQWWSFDVEYGSITLI 177 (177)
T ss_pred HHhCCCHHHHhccccCCeeEEeC
Confidence 99999999888999999999875
No 20
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.97 E-value=2.9e-30 Score=278.83 Aligned_cols=190 Identities=25% Similarity=0.303 Sum_probs=169.4
Q ss_pred CCccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCcc
Q 006920 430 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKI 504 (625)
Q Consensus 430 ~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~v~ 504 (625)
.+++|||||||++.+|..++++| |.|||+.|++||+.+++.|... .+++.|||||+.||+|||+.+ ++.++.
T Consensus 170 ~~~~i~LvRHGet~~n~~~~~~g~~D~~Lt~~G~~QA~~l~~~l~~~---~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~ 246 (372)
T PRK07238 170 TPTRLLLLRHGQTELSVQRRYSGRGNPELTEVGRRQAAAAARYLAAR---GGIDAVVSSPLQRARDTAAAAAKALGLDVT 246 (372)
T ss_pred CceEEEEEeCCCCCcccCCeeeCCCCCCcCHHHHHHHHHHHHHHhcc---CCCCEEEECChHHHHHHHHHHHHhcCCCcE
Confidence 44889999999999999888877 9999999999999999988632 178999999999999999999 567889
Q ss_pred cccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEechHHHH
Q 006920 505 QWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLR 582 (625)
Q Consensus 505 ~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~--~~~VlIVsHg~vir 582 (625)
+++.|+|+++|.|+|++.+++.+.+|+.+..|..++ .+.+|+|||+.++.+|+..++++|... +++|||||||++|+
T Consensus 247 ~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~w~~~~-~~~~p~gEs~~~~~~Rv~~~l~~l~~~~~~~~vlvVtHg~~ir 325 (372)
T PRK07238 247 VDDDLIETDFGAWEGLTFAEAAERDPELHRAWLADT-SVAPPGGESFDAVARRVRRARDRLIAEYPGATVLVVSHVTPIK 325 (372)
T ss_pred ECccceeCCCCccCCCCHHHHHHHCHHHHHHHHhCC-CCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEEChHHHH
Confidence 999999999999999999999999999999998876 578899999999999999999999754 57899999999999
Q ss_pred HHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCe-EEEEEEEc
Q 006920 583 ALYAYFADRPLKEIPHIETPLHTIIEIQMGVTG-VQEKRYKL 623 (625)
Q Consensus 583 ~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g-~~~~r~~l 623 (625)
++++++++.+....+.+.+++++++.+++...+ +....++.
T Consensus 326 ~ll~~~l~~~~~~~~~~~~~~~~~s~l~~~~~~~~~~~~~n~ 367 (372)
T PRK07238 326 TLLRLALDAGPGVLYRLHLDLASLSIAEFYPDGPASVRLVND 367 (372)
T ss_pred HHHHHHhCCCHHHhhhcccCCceEEEEEEECCCceEEEEecC
Confidence 999999999998888889999999999885443 55555553
No 21
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=99.95 E-value=4.4e-28 Score=228.16 Aligned_cols=150 Identities=38% Similarity=0.577 Sum_probs=136.8
Q ss_pred cEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCccccc
Q 006920 433 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWR 507 (625)
Q Consensus 433 ~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~v~~~~ 507 (625)
+|||||||++.+|..+.+++ |.|||+.|+.||+.+++.|.+. ..+++.|||||+.||+|||+.+ ++.++.+++
T Consensus 1 ~i~liRHg~~~~n~~~~~~~~~d~~Lt~~G~~qA~~~~~~l~~~--~~~~~~i~~Sp~~R~~qTA~~~~~~~~~~~~~~~ 78 (158)
T PF00300_consen 1 RIYLIRHGESEFNAEGRVQGDSDPPLTERGREQARQLGEYLAER--DIQIDVIYSSPLRRCIQTAEIIAEGLGIEIIVDP 78 (158)
T ss_dssp EEEEEE-S-BHHHHTTBCGTTSSTGBEHHHHHHHHHHHHHHHHT--TSSCSEEEEESSHHHHHHHHHHHHHHTSEEEEEG
T ss_pred CEEEEECCccccccCCCcCCCCCccccHHHHHHHHhhccccccc--ccCceEEecCCcchhhhhhchhhccccccccccc
Confidence 69999999999998887777 6689999999999999998865 6689999999999999999999 568999999
Q ss_pred ccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHH---cCCCcEEEEechHHHHHH
Q 006920 508 ALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELE---RQRAPVVVISHQAVLRAL 584 (625)
Q Consensus 508 ~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~---~~~~~VlIVsHg~vir~L 584 (625)
.|.|+++|.|+|++..++.+.+|..+..|..+...+.+|++||+.++..|+..++++|. ..+++|||||||++|++|
T Consensus 79 ~l~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~~~~l~~~~~~~~~vliVsHg~~i~~~ 158 (158)
T PF00300_consen 79 RLREIDFGDWEGRPFDEIEEKFPDEFEAWWSDPYFYRPPGGESWEDFQQRVKQFLDELIAYKRPGENVLIVSHGGFIRAL 158 (158)
T ss_dssp GGSCCGCGGGTTSBHHHHHHHHHHHHHHHHHHTSSCGSTTSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE-HHHHHHH
T ss_pred ccccccchhhcccchhhHHhhhhcccchhhccccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999998 368899999999999986
No 22
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=99.95 E-value=4.6e-27 Score=238.64 Aligned_cols=179 Identities=25% Similarity=0.307 Sum_probs=151.1
Q ss_pred CCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc---C---CCcccccccccccCC
Q 006920 444 DNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---G---FPKIQWRALDEINAG 515 (625)
Q Consensus 444 ~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~---g---~~v~~~~~L~Ei~~G 515 (625)
+|..++++| |.|||+.|++||+.+++.|... ..+++.|||||+.||+|||+.|. + .++.+++.|+|+++|
T Consensus 1 ~N~~~~~qG~~D~pLTe~G~~QA~~l~~~L~~~--~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~L~E~~~G 78 (236)
T PTZ00123 1 WNKENRFTGWTDVPLSEKGVQEAREAGKLLKEK--GFRFDVVYTSVLKRAIKTAWIVLEELGQLHVPVIKSWRLNERHYG 78 (236)
T ss_pred CcccCceeCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCCCceeCchhhhcccc
Confidence 466777888 9999999999999999998754 46799999999999999999992 2 467889999999999
Q ss_pred cCCCCCHHHHHhhChHHHHHHhcCccC-------------------------CCCCCCCCHHHHHHHHHHHHHHHHc---
Q 006920 516 VCDGMTYEEIKKNMPEEYEARKKDKLR-------------------------YRYPRGESYLDVIQRLEPVIIELER--- 567 (625)
Q Consensus 516 ~~eg~~~~ei~~~~p~~~~~~~~~~~~-------------------------~~~p~gES~~d~~~Rv~~~i~~L~~--- 567 (625)
.|+|++.+++.+.+|+.+..|+.+.+. +++|+|||+.++.+|+.++|+++..
T Consensus 79 ~~EG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gES~~~~~~Rv~~~l~~li~~~~ 158 (236)
T PTZ00123 79 ALQGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPGNDPVYKDIPKDALPNTECLKDTVERVLPYWEDHIAPDI 158 (236)
T ss_pred cccCCCHHHHHHHccHHHHHHHhcccCCCCCCcccccccccccchhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999875555443322 2458999999999999999988632
Q ss_pred -CCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEEEEEEcC
Q 006920 568 -QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYKLM 624 (625)
Q Consensus 568 -~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~~r~~l~ 624 (625)
.+++|||||||++|+++++++++++...++.+.+++|+++.|+++.+--..+.+.+.
T Consensus 159 ~~~~~vliVsHG~vir~ll~~l~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 216 (236)
T PTZ00123 159 LAGKKVLVAAHGNSLRALVKYLDKMSEEDILELNIPTGVPLVYELDENLKPIKKYYLL 216 (236)
T ss_pred hCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhhccCCCCceEEEEECCCCCEeeeeecC
Confidence 367899999999999999999999999888999999999999997664444554443
No 23
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=99.95 E-value=3.3e-27 Score=223.69 Aligned_cols=146 Identities=32% Similarity=0.410 Sum_probs=126.6
Q ss_pred cEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCccccc
Q 006920 433 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWR 507 (625)
Q Consensus 433 ~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~v~~~~ 507 (625)
+|||||||++.+|..+.+.| |.|||+.|++||+.+++.|...+ ..+++.|||||+.||+|||+++ ++.+ .+.+
T Consensus 1 ~i~lvRHG~s~~n~~~~~~g~~d~~Lt~~G~~qa~~~a~~l~~~~-~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~-~~~~ 78 (155)
T smart00855 1 RLYLIRHGETEANREGRLTGWTDSPLTELGRAQAEALGELLASLG-RLRFDVIYSSPLLRARETAEALAIALGLG-EVDP 78 (155)
T ss_pred CEEEEeCCCCcccccCeEcCCCCCCCCHHHHHHHHHHHHHHHhcc-CCCCCEEEeCchHHHHHHHHHHHHhcCCC-CCCh
Confidence 58999999999998777664 99999999999999999987431 3589999999999999999999 3444 4889
Q ss_pred ccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHc----CCCcEEEEechHHHHH
Q 006920 508 ALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER----QRAPVVVISHQAVLRA 583 (625)
Q Consensus 508 ~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~----~~~~VlIVsHg~vir~ 583 (625)
.|+|+++|.|+|++..++...+|+.+..| ..+.+|+|||+.++..|+.+++.++.+ .+++|||||||++|++
T Consensus 79 ~L~E~~~G~~~g~~~~~~~~~~~~~~~~~----~~~~~~~gEs~~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtHg~~ir~ 154 (155)
T smart00855 79 RLRERDYGAWEGLTKEEERAKAWTRPADW----LGAAPPGGESLADVVERLVRALEELIATHDKSGQNVLIVSHGGVIRA 154 (155)
T ss_pred hhhhcccceecCCcHHHHHHHHHHHHhcc----CCCCCcCCCCHHHHHHHHHHHHHHHHHhcccCCCeEEEEECCccccc
Confidence 99999999999999999988887765444 677889999999999999999999975 3678999999999986
Q ss_pred H
Q 006920 584 L 584 (625)
Q Consensus 584 L 584 (625)
+
T Consensus 155 ~ 155 (155)
T smart00855 155 L 155 (155)
T ss_pred C
Confidence 4
No 24
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=6e-27 Score=230.59 Aligned_cols=183 Identities=27% Similarity=0.311 Sum_probs=163.2
Q ss_pred CCCccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---
Q 006920 429 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG--- 500 (625)
Q Consensus 429 ~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g--- 500 (625)
+...+++||||||++||..+.++| |.+||+.|.+||.+++++|... +..++.+|||++.||.|||+.| .+
T Consensus 3 ~~~~~lvlvRHGes~wN~e~~~~G~~D~~Lte~G~~qA~~~~~~l~~~--~~~~~~~~tS~l~RakqT~~~il~~~~~~~ 80 (214)
T KOG0235|consen 3 SNTFRLVLVRHGESEWNKENIFQGWIDAPLTEKGEEQAKAAAQRLKDL--NIEFDVCYTSDLKRAKQTAELILEELKQKK 80 (214)
T ss_pred CcceEEEEEecCchhhhhhCcccccccCccChhhHHHHHHHHHHHHhc--CCcccEEecCHHHHHHHHHHHHHHhhccCC
Confidence 456889999999999999999999 9999999999999999999877 6789999999999999999999 33
Q ss_pred CCcccccccccccCCcCCCCCHHHHHhhChHH--HHHHhcCc-cCCCCCCCCCHHHHHHHHHHHHHHHHc----CCCcEE
Q 006920 501 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE--YEARKKDK-LRYRYPRGESYLDVIQRLEPVIIELER----QRAPVV 573 (625)
Q Consensus 501 ~~v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~--~~~~~~~~-~~~~~p~gES~~d~~~Rv~~~i~~L~~----~~~~Vl 573 (625)
.++...++|+|.++|.++|+...++.++++++ +..|.... ....+|.|||+.++..|+.+++++... ++++|+
T Consensus 81 ~pv~~~~~L~ER~yG~l~Gl~~~e~~~~~g~~~~~~~~r~~~~~~~~~p~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vl 160 (214)
T KOG0235|consen 81 VPVLYTWRLNERHYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEIPLPDGESLKDCLDRLLPFWNEEIAKESKEGKNVL 160 (214)
T ss_pred cceEechhhchhhhccccCccHHHHHHHcchhccccchhhccCCcCCCCCCccHHHHHHHHHHHHHHhhhhhhcCCcEEE
Confidence 78999999999999999999999999999977 45555443 445678999999999999999997754 478999
Q ss_pred EEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcC
Q 006920 574 VISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV 613 (625)
Q Consensus 574 IVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~ 613 (625)
|++||+.+|+++.++.|+..+.+..+.++.+-.+.++.+-
T Consensus 161 i~aHGnsLR~i~~~l~g~s~~~i~~~~~~t~vp~v~~ld~ 200 (214)
T KOG0235|consen 161 IVAHGNSLRAIVKHLEGISDEAIKELNLPTGVPIVYELDK 200 (214)
T ss_pred EEcCcHHHHHHHHHHhcCCHhhhhheecccCCceEEEccc
Confidence 9999999999999999999999999999998888887653
No 25
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2.9e-26 Score=221.56 Aligned_cols=184 Identities=23% Similarity=0.260 Sum_probs=166.0
Q ss_pred CccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh------cCCC
Q 006920 431 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI------AGFP 502 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i------~g~~ 502 (625)
|++++|+||||++||....|.| |.+||++|.+||...|+.|++. +..||.+|||-+.||++|+..+ ..++
T Consensus 1 ~~~Lvl~RHGqSeWN~~NlFtGW~Dv~LtekG~~EA~~ag~llk~~--~~~~dia~TS~L~RAi~T~~i~L~e~d~~~ip 78 (230)
T COG0588 1 MMKLVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEE--GLEFDIAYTSVLKRAIKTLNIVLEESDQLWIP 78 (230)
T ss_pred CceEEEEecCchhhhhcCceeeeeecCcchhhHHHHHHHHHHHHHc--CCCcceeehHHHHHHHHHHHHHhhhhcccCcc
Confidence 5789999999999999999999 9999999999999999999877 7899999999999999999999 3678
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCC-------------------------CCCCHHHHHHH
Q 006920 503 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYP-------------------------RGESYLDVIQR 557 (625)
Q Consensus 503 v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p-------------------------~gES~~d~~~R 557 (625)
+.....|+|.+||.++|++..+..++|.++....+...+.-.|| .+||+.++.+|
T Consensus 79 v~kswrLNERhYG~LqGlnK~~t~~kyGeeqv~~wRRsydi~PP~~~~~~~~~~~~d~ry~~~~~~~~p~~EsLkdt~~R 158 (230)
T COG0588 79 VIKSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVER 158 (230)
T ss_pred hhhHHHhhhhhhhhhhcCChHHHHHHHhHHHHHHHHHhcCCCCCCcccccccccccccccccccccCCCccchHHHHHHH
Confidence 88889999999999999999999999998766655555666665 34999999999
Q ss_pred HHHHHHHHH----cCCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeE
Q 006920 558 LEPVIIELE----RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGV 616 (625)
Q Consensus 558 v~~~i~~L~----~~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~ 616 (625)
+.+++.... .++++|+|++||+.+|+|+.|+.+++-+++..+.+|++.-.+++.+...-
T Consensus 159 v~Pyw~~~I~p~l~~Gk~VlI~AHGNSlRaLiK~L~~iSd~dI~~l~IPtg~Plvyeld~~l~ 221 (230)
T COG0588 159 VLPYWEDDIAPNLKSGKNVLIVAHGNSLRALIKYLEGISDEDILDLNIPTGIPLVYELDKNLK 221 (230)
T ss_pred hhHHHHHHhhHHHhCCCeEEEEecchhHHHHHHHHhCCCHHHhhhcccCCCCcEEEEECCCCc
Confidence 999988753 35899999999999999999999999999999999999999999876643
No 26
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=99.87 E-value=1.3e-21 Score=204.95 Aligned_cols=167 Identities=20% Similarity=0.256 Sum_probs=127.8
Q ss_pred ccEEEeccccccCCCCCCcCCCC---CCCHHHHHHHHHHHHHHHHHhcC----CCCCEEEEcCcHHHHHHHHHh---c-C
Q 006920 432 RPILLTRHGESRDNVRGRIGGDT---ILSDAGEIYAKKLANFVEKRLKS----ERAASIWTSTLQRTILTASPI---A-G 500 (625)
Q Consensus 432 ~~I~LVRHGes~~n~~~~~~gD~---pLTe~G~~QA~~l~~~L~~~l~~----~~~~~I~sSpl~Ra~qTA~~i---~-g 500 (625)
++||||||||+.++. ..|. +||+.|++||+++++.|.+.... .+++.|||||+.||+|||+.| + +
T Consensus 103 ~~L~LVRHGq~~~~~----~~d~~~~~LTe~G~~QA~~lg~~L~~~~~~~~~~~~~d~IysSPL~RA~qTAeiIa~~~~~ 178 (299)
T PTZ00122 103 RQIILVRHGQYINES----SNDDNIKRLTELGKEQARITGKYLKEQFGEILVDKKVKAIYHSDMTRAKETAEIISEAFPG 178 (299)
T ss_pred eEEEEEECCCCCCCC----CCCcccCCCCHHHHHHHHHHHHHHHHhhccccccCCCCEEEEcCcHHHHHHHHHHHHhCCC
Confidence 899999999975442 2244 49999999999999998754211 278999999999999999999 2 4
Q ss_pred CCcccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcC-----CCcEEEE
Q 006920 501 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-----RAPVVVI 575 (625)
Q Consensus 501 ~~v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~-----~~~VlIV 575 (625)
.++.+++.|+|. ++..+. | ....+.++++|+ .+..+|+.+++.++..+ ++.+|||
T Consensus 179 ~~v~~d~~LrEG-------~~~~~~----~--------~~~~~~~~gee~-~~~~~Rv~~al~~i~~r~~~~~~~~vLVV 238 (299)
T PTZ00122 179 VRLIEDPNLAEG-------VPCAPD----P--------PSRGFKPTIEEI-LEDMKRIEAAFEKYFHRPVEDEDSVEIIV 238 (299)
T ss_pred CCceeCcccccC-------CccccC----c--------cccccCCCcchH-HHHHHHHHHHHHHHHHhcccCCCCeEEEE
Confidence 678889999992 221110 1 011234455555 67799999999998642 3568999
Q ss_pred echHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcC-CeEEEEEEE
Q 006920 576 SHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV-TGVQEKRYK 622 (625)
Q Consensus 576 sHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~-~g~~~~r~~ 622 (625)
|||++|+++++++++.+.+.++.+.++||+++.|++.+ ..+....++
T Consensus 239 sHGgvIR~ll~~lLglp~~~~~~~~~~N~sit~l~~~~~g~~~l~~~n 286 (299)
T PTZ00122 239 CHGNVIRYLVCRALQLPPEAWLRLSLYNCGITWIVISSEGHVSLSGFG 286 (299)
T ss_pred eCChHHHHHHHHHhCcCHHHHhhccCCCceEEEEEEeCCCcEEEEEEe
Confidence 99999999999999999888888899999999999864 456666555
No 27
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=99.87 E-value=1.3e-21 Score=184.34 Aligned_cols=135 Identities=33% Similarity=0.450 Sum_probs=116.6
Q ss_pred cEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---c-CCCcccc
Q 006920 433 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFPKIQW 506 (625)
Q Consensus 433 ~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~-g~~v~~~ 506 (625)
+|||||||++.++......+ |.|||+.|++||+.+++.|... ..+++.|||||+.||+|||+++ + +.++...
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~--~~~~~~i~~Sp~~Ra~qTa~~l~~~~~~~~~~~~ 78 (153)
T cd07067 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKEL--GIKFDRIYSSPLKRAIQTAEIILEELPGLPVEVD 78 (153)
T ss_pred CEEEEECCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECcHHHHHHHHHHHHHhcCCCCceeC
Confidence 58999999999887654444 9999999999999999999754 3479999999999999999999 2 4566666
Q ss_pred cccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEechHHHHHH
Q 006920 507 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRAL 584 (625)
Q Consensus 507 ~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~--~~~VlIVsHg~vir~L 584 (625)
+.|.| .|+..+++++.+. +++|+||||+++|+.+
T Consensus 79 ~~L~e--------------------------------------------~R~~~~~~~l~~~~~~~~iliV~H~~~i~~~ 114 (153)
T cd07067 79 PRLRE--------------------------------------------ARVLPALEELIAPHDGKNVLIVSHGGVLRAL 114 (153)
T ss_pred ccchH--------------------------------------------HHHHHHHHHHHHhCCCCeEEEEeChHHHHHH
Confidence 76666 7888899988774 7899999999999999
Q ss_pred HHHHhCCCCCCCCCcccCCcEEEEEEEcC
Q 006920 585 YAYFADRPLKEIPHIETPLHTIIEIQMGV 613 (625)
Q Consensus 585 l~~l~~~~~~~~~~l~i~~~si~~l~~~~ 613 (625)
++++++.+....+.+.+++++++++++..
T Consensus 115 ~~~l~~~~~~~~~~~~~~~~s~~~~~~~~ 143 (153)
T cd07067 115 LAYLLGLSDEDILRLNLPNGSISVLELDE 143 (153)
T ss_pred HHHHhCCCHHHHHhcCCCCceEEEEEEeC
Confidence 99999998877778899999999999865
No 28
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=99.79 E-value=1.4e-18 Score=162.76 Aligned_cols=132 Identities=30% Similarity=0.431 Sum_probs=109.2
Q ss_pred cEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc-C----CCccc
Q 006920 433 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-G----FPKIQ 505 (625)
Q Consensus 433 ~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~-g----~~v~~ 505 (625)
+|||||||++.++....+.+ |.|||+.|++||+.+++.|.+. ...++.|||||+.||+|||+++. + .++..
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~l~~~l~~~--~~~~~~v~sSp~~R~~~Ta~~~~~~~~~~~~~~~ 78 (153)
T cd07040 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRER--YIKFDRIYSSPLKRAIQTAEIILEGLFEGLPVEV 78 (153)
T ss_pred CEEEEeCCCCccccCCCccCCCCCCcCHHHHHHHHHHHHHHHHh--CCCCCEEEECChHHHHHHHHHHHHHhcCCCCeEE
Confidence 48999999999987665334 9999999999999999999865 24789999999999999999992 1 22221
Q ss_pred ccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcC----CCcEEEEechHHH
Q 006920 506 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ----RAPVVVISHQAVL 581 (625)
Q Consensus 506 ~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~----~~~VlIVsHg~vi 581 (625)
.+. .|+.+++.++.+. +++++||||+++|
T Consensus 79 ~~~-----------------------------------------------~r~~~~~~~~~~~~~~~~~~iliv~H~~~i 111 (153)
T cd07040 79 DPR-----------------------------------------------ARVLNALLELLARHLLDGKNVLIVSHGGTI 111 (153)
T ss_pred CHH-----------------------------------------------HHHHHHHHHHHHhhCCCCCEEEEEeCCHHH
Confidence 111 7888888887663 6899999999999
Q ss_pred HHHHHHHhCCCCCCCCCcccCCcEEEEEEEcC
Q 006920 582 RALYAYFADRPLKEIPHIETPLHTIIEIQMGV 613 (625)
Q Consensus 582 r~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~ 613 (625)
+.+++++++.+....+.+.+++++++.++...
T Consensus 112 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (153)
T cd07040 112 RALLAALLGLSDEEILSLNLPNGSILVLELDE 143 (153)
T ss_pred HHHHHHHhCcCHHHhccccCCCCceEEEEEcC
Confidence 99999999988777777889999999998864
No 29
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.77 E-value=9.6e-18 Score=158.90 Aligned_cols=119 Identities=24% Similarity=0.257 Sum_probs=108.1
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM 298 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~ 298 (625)
..++|.+|||+|||||||||+|.+|+++|...|..++++|+|.+| +|++...+|...++.+++++..++++.+.+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR---~gL~~dLgFs~edR~eniRRvaevAkll~d-- 93 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR---HGLNRDLGFSREDRIENIRRVAEVAKLLAD-- 93 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh---hcccCCCCCChHHHHHHHHHHHHHHHHHHH--
Confidence 578899999999999999999999999999999999999999997 477888899999999999999999999877
Q ss_pred HHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHH
Q 006920 299 ISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 349 (625)
Q Consensus 299 ~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R 349 (625)
.|.+||+....+.++.|++++++...+ +++-|++.||.+++.+|
T Consensus 94 ------aG~iviva~ISP~r~~R~~aR~~~~~~-~FiEVyV~~pl~vce~R 137 (197)
T COG0529 94 ------AGLIVIVAFISPYREDRQMARELLGEG-EFIEVYVDTPLEVCERR 137 (197)
T ss_pred ------CCeEEEEEeeCccHHHHHHHHHHhCcC-ceEEEEeCCCHHHHHhc
Confidence 999999999999999999999995433 56667778999888877
No 30
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=99.72 E-value=1.5e-16 Score=150.93 Aligned_cols=136 Identities=18% Similarity=0.184 Sum_probs=98.9
Q ss_pred ccEEEeccccccCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCcccccc
Q 006920 432 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWRA 508 (625)
Q Consensus 432 ~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~v~~~~~ 508 (625)
|+|||||||++.++.. -..|.|||+.|++||+.++++|.+. ...++.|||||+.||+|||+.+ ++.+....
T Consensus 1 m~l~LvRHg~a~~~~~--~d~dr~Lt~~G~~qa~~~~~~l~~~--~~~~d~i~sSp~~Ra~qTa~~l~~~~~~~~~~~-- 74 (152)
T TIGR00249 1 MQLFIMRHGDAALDAA--SDSVRPLTTNGCDESRLVAQWLKGQ--GVEIERILVSPFVRAEQTAEIVGDCLNLPSSAE-- 74 (152)
T ss_pred CEEEEEeCCCcccccC--CCCCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCcHHHHHHHHHHHHHcCCCcceE--
Confidence 5799999999988764 2238999999999999999998764 4578999999999999999999 22221110
Q ss_pred cccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHc-CCCcEEEEechHHHHHHHHH
Q 006920 509 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER-QRAPVVVISHQAVLRALYAY 587 (625)
Q Consensus 509 L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~-~~~~VlIVsHg~vir~Ll~~ 587 (625)
.++++ +|+ ++..+ +..+|.++.. ..++|+||+|+..+..++.+
T Consensus 75 -------~~~~l------------------------~p~-~~~~~----~~~~l~~~~~~~~~~vliVgH~P~i~~l~~~ 118 (152)
T TIGR00249 75 -------VLEGL------------------------TPC-GDIGL----VSDYLEALTNEGVASVLLVSHLPLVGYLVAE 118 (152)
T ss_pred -------EccCc------------------------CCC-CCHHH----HHHHHHHHHhcCCCEEEEEeCCCCHHHHHHH
Confidence 11111 121 33333 3334444443 35689999999999999999
Q ss_pred HhCCCCCCCCCcccCCcEEEEEEEcC
Q 006920 588 FADRPLKEIPHIETPLHTIIEIQMGV 613 (625)
Q Consensus 588 l~~~~~~~~~~l~i~~~si~~l~~~~ 613 (625)
+++.+.. +.++.+++..|+++.
T Consensus 119 l~~~~~~----~~~~~~~~~~l~~~~ 140 (152)
T TIGR00249 119 LCPGENP----IMFTTGAIASLLWDE 140 (152)
T ss_pred HhCCCCC----CcCcceeEEEEEEec
Confidence 9985321 468999999999863
No 31
>COG0645 Predicted kinase [General function prediction only]
Probab=99.69 E-value=5.5e-16 Score=146.72 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=118.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 302 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l 302 (625)
+.+++|+|+||+||||+|+.|++.|++. +|.+|++||.++|.+.... ...+.++-.+...++..+...+...|
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~lgA~-----~lrsD~irk~L~g~p~~~r--~~~g~ys~~~~~~vy~~l~~~A~l~l 73 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELLGAI-----RLRSDVIRKRLFGVPEETR--GPAGLYSPAATAAVYDELLGRAELLL 73 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhcCce-----EEehHHHHHHhcCCccccc--CCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999 9999999999999443221 22345555666777777777666666
Q ss_pred HcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 006920 303 HEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 381 (625)
Q Consensus 303 ~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~y 381 (625)
..|+. ||+|+++.++..|+.++.+ .+.++.+..|.|.++.+.+..|...|+ ++.+|+ +.. .+..+
T Consensus 74 ~~G~~-VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~----~d~sDA-~~~--------il~~q 139 (170)
T COG0645 74 SSGHS-VVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARK----GDASDA-TFD--------ILRVQ 139 (170)
T ss_pred hCCCc-EEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhC----CCcccc-hHH--------HHHHH
Confidence 66554 5999999999999999999 788999999999999888887777663 477777 666 56667
Q ss_pred hhccccCCCC
Q 006920 382 EKVYEPVDEG 391 (625)
Q Consensus 382 ~~~fEp~~e~ 391 (625)
...++|+++.
T Consensus 140 ~~~~~~~~~~ 149 (170)
T COG0645 140 LAEDEPWTEW 149 (170)
T ss_pred HhhhCCcccc
Confidence 7778888775
No 32
>PRK06193 hypothetical protein; Provisional
Probab=99.68 E-value=4.2e-16 Score=154.30 Aligned_cols=142 Identities=15% Similarity=0.088 Sum_probs=105.5
Q ss_pred CccEEEeccccccCCCCCCcCC-------CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCCCc
Q 006920 431 PRPILLTRHGESRDNVRGRIGG-------DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPK 503 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~g-------D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~g~~v 503 (625)
..+|||||||++.+|..+.+.+ |.|||++|++||+.+++.|.+. ...++.|||||+.||+|||+.+++..
T Consensus 42 ~~~L~LvRHGet~~n~~~~~~gd~d~~~~~rpLt~~G~~qA~~l~~~L~~~--~~~~d~V~sSpl~Ra~qTA~il~~~~- 118 (206)
T PRK06193 42 GGYVIYFRHAATDRSQADQDTSDMDDCSTQRNLSEEGREQARAIGEAFRAL--AIPVGKVISSPYCRAWETAQLAFGRH- 118 (206)
T ss_pred CCEEEEEeCccCCCCccCCcccccccCcCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHhccc-
Confidence 4789999999998887665544 3699999999999999999765 56799999999999999999985321
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEechHHHHH
Q 006920 504 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRA 583 (625)
Q Consensus 504 ~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~~~~VlIVsHg~vir~ 583 (625)
.....+++ +....+.+|+...+.+|+..+|+++....++|+||+|+..++.
T Consensus 119 ~~~~~l~~-----------------------------~~~~~~~~~~~~~y~~~l~~~I~~l~~~~~~vLlVgHnp~i~~ 169 (206)
T PRK06193 119 EKEIRLNF-----------------------------LNSEPVPAERNALLKAGLRPLLTTPPDPGTNTVLVGHDDNLEA 169 (206)
T ss_pred ccCccccc-----------------------------ccccCCChhhHHHHHHHHHHHHhhCCCCCCeEEEEeCchHHHH
Confidence 00000110 0011224578888889999999999877889999999999999
Q ss_pred HHHHHhCCCCCCCCCcccCCcEEEEEEEcCCe
Q 006920 584 LYAYFADRPLKEIPHIETPLHTIIEIQMGVTG 615 (625)
Q Consensus 584 Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g 615 (625)
+++++.+ +.++.+.|...+.|
T Consensus 170 l~g~~~~-----------~~g~~~~~~~~~~g 190 (206)
T PRK06193 170 ATGIYPE-----------PEGEAAVFEPLGGE 190 (206)
T ss_pred HhCCCCc-----------cCccEEEEEeCCCC
Confidence 8885444 24555555554433
No 33
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=99.68 E-value=1.1e-15 Score=146.20 Aligned_cols=135 Identities=18% Similarity=0.217 Sum_probs=94.8
Q ss_pred ccEEEeccccccCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCcccccc
Q 006920 432 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWRA 508 (625)
Q Consensus 432 ~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~v~~~~~ 508 (625)
|+|||||||++.++.. ...|.|||++|++||+.++++|... ...++.|||||+.||+|||+.+ .+.+... ..
T Consensus 1 m~l~lvRHg~a~~~~~--~d~~rpLt~~G~~qa~~~~~~l~~~--~~~~d~i~sSp~~Ra~qTa~~l~~~~~~~~~~-~~ 75 (159)
T PRK10848 1 MQVFIMRHGDAALDAA--SDSVRPLTTCGCDESRLMANWLKGQ--KVDIERVLVSPYLRAEQTLEVVGECLNLPASA-EV 75 (159)
T ss_pred CEEEEEeCCCCCCCCC--CCcCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCHHHHHHHHHHHHHHhCCCCce-EE
Confidence 5799999999988742 1227899999999999999999754 4578999999999999999999 2322211 11
Q ss_pred cccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHc-CCCcEEEEechHHHHHHHHH
Q 006920 509 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER-QRAPVVVISHQAVLRALYAY 587 (625)
Q Consensus 509 L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~-~~~~VlIVsHg~vir~Ll~~ 587 (625)
..++.. ++ +. ..+..++..+.. ..++|+||+|...+..+..+
T Consensus 76 ~~~l~~--------------------------------~~-~~----~~~~~~l~~~~~~~~~~vllVgH~P~l~~l~~~ 118 (159)
T PRK10848 76 LPELTP--------------------------------CG-DV----GLVSAYLQALANEGVASVLVISHLPLVGYLVAE 118 (159)
T ss_pred ccCCCC--------------------------------CC-CH----HHHHHHHHHHHhcCCCeEEEEeCcCcHHHHHHH
Confidence 111111 10 01 122233333333 24689999999999999999
Q ss_pred HhCCCCCCCCCcccCCcEEEEEEEc
Q 006920 588 FADRPLKEIPHIETPLHTIIEIQMG 612 (625)
Q Consensus 588 l~~~~~~~~~~l~i~~~si~~l~~~ 612 (625)
+++..... .++++++..|+++
T Consensus 119 L~~~~~~~----~~~t~~i~~l~~~ 139 (159)
T PRK10848 119 LCPGETPP----MFTTSAIACVTLD 139 (159)
T ss_pred HhCCCCCC----CcCCceEEEEEec
Confidence 98743211 3899999999987
No 34
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.68 E-value=2.8e-16 Score=148.87 Aligned_cols=117 Identities=25% Similarity=0.296 Sum_probs=92.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 301 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~ 301 (625)
+|++|||+|+|||||||+|++|.++|...|..+.++|+|.+|. +++....|...++.+.+++..++++.+.+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~---~l~~dl~fs~~dR~e~~rr~~~~A~ll~~----- 72 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH---GLNADLGFSKEDREENIRRIAEVAKLLAD----- 72 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT---TTTTT--SSHHHHHHHHHHHHHHHHHHHH-----
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh---ccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----
Confidence 5789999999999999999999999999999999999998874 55666677777788888888888877766
Q ss_pred HHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHH
Q 006920 302 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 350 (625)
Q Consensus 302 l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~ 350 (625)
.|.+||++++.+.++.|+.++++.... .++.|++.||.+++.+|.
T Consensus 73 ---~G~ivIva~isp~~~~R~~~R~~~~~~-~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 73 ---QGIIVIVAFISPYREDREWARELIPNE-RFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp ---TTSEEEEE----SHHHHHHHHHHHHTT-EEEEEEEES-HHHHHHHT
T ss_pred ---CCCeEEEeeccCchHHHHHHHHhCCcC-ceEEEEeCCCHHHHHHhC
Confidence 899999999999999999999994432 677777789998888883
No 35
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=99.65 E-value=2.2e-15 Score=143.27 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=104.3
Q ss_pred CccEEEeccccccCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcC-CCccccccc
Q 006920 431 PRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAG-FPKIQWRAL 509 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~g-~~v~~~~~L 509 (625)
||+|||+|||++.+...+.-..|.|||++|+++++.+|++|+++ ...+|.|+|||+.||+|||+.+.+ +.......+
T Consensus 1 m~~L~LmRHgkA~~~~~~~~D~dR~Lt~~G~~ea~~~a~~L~~~--~~~~D~VL~Spa~Ra~QTae~v~~~~~~~~~~~~ 78 (163)
T COG2062 1 MMRLYLMRHGKAEWAAPGIADFDRPLTERGRKEAELVAAWLAGQ--GVEPDLVLVSPAVRARQTAEIVAEHLGEKKVEVF 78 (163)
T ss_pred CceEEEeecccccccCCCCCCccCcCCHHHHHHHHHHHHHHHhc--CCCCCEEEeChhHHHHHHHHHHHHhhCcccceec
Confidence 68999999999999876544449999999999999999999988 668999999999999999999921 111111222
Q ss_pred ccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEechHHHHHHHHHHh
Q 006920 510 DEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFA 589 (625)
Q Consensus 510 ~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~~~~VlIVsHg~vir~Ll~~l~ 589 (625)
.|.-++. .| .-+...|+.+.+.-++|++|+|...+..|...+.
T Consensus 79 ~~l~p~~------------d~-------------------------~~~l~~l~~~~d~v~~vllVgH~P~l~~l~~~L~ 121 (163)
T COG2062 79 EELLPNG------------DP-------------------------GTVLDYLEALGDGVGSVLLVGHNPLLEELALLLA 121 (163)
T ss_pred cccCCCC------------CH-------------------------HHHHHHHHHhcccCceEEEECCCccHHHHHHHHc
Confidence 2221110 01 1122334444444578999999999999999998
Q ss_pred CCCCCCCCCcccCCcEEEEEEEcC
Q 006920 590 DRPLKEIPHIETPLHTIIEIQMGV 613 (625)
Q Consensus 590 ~~~~~~~~~l~i~~~si~~l~~~~ 613 (625)
+. .-....||.++|..++++.
T Consensus 122 ~~---~~~~~~fptsgia~l~~~~ 142 (163)
T COG2062 122 GG---ARLPVKFPTSGIAVLEFDG 142 (163)
T ss_pred cc---cccccCCCcccEEEEEecc
Confidence 85 2344579999999999984
No 36
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.63 E-value=3e-15 Score=139.10 Aligned_cols=118 Identities=21% Similarity=0.251 Sum_probs=85.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 304 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~ 304 (625)
||+|+|+|||||||+|+.|++.+++. +++.|.++..+.+....... ... +....+...+.+.+...+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~-----~i~~D~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~l~- 68 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAV-----VISQDEIRRRLAGEDPPSPS---DYI---EAEERAYQILNAAIRKALR- 68 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEE-----EEEHHHHHHHHCCSSSGCCC---CCH---HHHHHHHHHHHHHHHHHHH-
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCE-----EEeHHHHHHHHcccccccch---hHH---HHHHHHHHHHHHHHHHHHH-
Confidence 69999999999999999999999977 99999999877763322111 111 1222333333333334454
Q ss_pred CCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhh
Q 006920 305 GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 305 ~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr 354 (625)
.|..+|+|.++..+..|+.+.++ .++++++.+++|.|+.+++.+|+..|.
T Consensus 69 ~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (143)
T PF13671_consen 69 NGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRN 119 (143)
T ss_dssp TT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTH
T ss_pred cCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcC
Confidence 45557999999999999999999 788999999999999988888876654
No 37
>KOG4754 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=2e-15 Score=145.82 Aligned_cols=166 Identities=19% Similarity=0.207 Sum_probs=122.2
Q ss_pred CccEEEeccccccCCCCCCcC---------CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcC-
Q 006920 431 PRPILLTRHGESRDNVRGRIG---------GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAG- 500 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~---------gD~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~g- 500 (625)
-++||||||||..+|+.+.-. .|+.||+.|++|+..++..+...--...+..|++||++||.||+..-++
T Consensus 14 ~KtiyLvRHgQg~HNV~g~~~h~ay~s~~~fD~~LTplG~~Qv~~l~~~~~A~qL~~~ieliv~SPMrRtLqT~v~~f~~ 93 (248)
T KOG4754|consen 14 CKTIYLVRHGQGIHNVAGEEDHKAYWSEDYFDPHLTPLGWKQVDNLRKHLMAKQLPNKIELIVVSPMRRTLQTMVIAFGG 93 (248)
T ss_pred ceEEEEEeccccccccCcccchhhhhhhhccccccCHHHHHHHHHHhhhhhhhhcCCceeEEEechHHHHHHHHHHHhcc
Confidence 589999999999998765311 1999999999999999998765411234899999999999999998722
Q ss_pred ---------CCccccccc----cc-ccCCcCC-CCCHHHHHhhChHH-HHHHhc-CccCCCCCCCCCHHHHHHHHHHHHH
Q 006920 501 ---------FPKIQWRAL----DE-INAGVCD-GMTYEEIKKNMPEE-YEARKK-DKLRYRYPRGESYLDVIQRLEPVII 563 (625)
Q Consensus 501 ---------~~v~~~~~L----~E-i~~G~~e-g~~~~ei~~~~p~~-~~~~~~-~~~~~~~p~gES~~d~~~Rv~~~i~ 563 (625)
.++.+.|.+ +| +.--.|+ +.+..+.++.||.. |..-.. ..+.+.+-..|...+...|-..++.
T Consensus 94 ~~~e~g~~~~p~~vsp~~i~~~rE~lG~hpCD~r~~v~~~~~lfp~~DFs~~~~dv~~~~~pdy~ed~e~~a~r~re~~~ 173 (248)
T KOG4754|consen 94 YLAEDGEDPAPVKVSPPFIAVCRETLGDHPCDRRSSVTDLMKLFPAYDFSLCETDVDPLKKPDYREDDEESAARSREFLE 173 (248)
T ss_pred eeccCCCcCCceeecchHHHHHHHHhCCCcccccchhHHHHhhcccccceeeccCcchhccCcchhhHHHHHHhHHHHHH
Confidence 245555666 66 4333444 55778888888832 211111 2234445567999999999999999
Q ss_pred HHHcC-CCcEEEEechHHHHHHHHHHhC-CCCCCC
Q 006920 564 ELERQ-RAPVVVISHQAVLRALYAYFAD-RPLKEI 596 (625)
Q Consensus 564 ~L~~~-~~~VlIVsHg~vir~Ll~~l~~-~~~~~~ 596 (625)
++... .+.|.||+|++.|+.++..+.. ++....
T Consensus 174 ~l~~r~ek~iavvths~fl~~llk~i~k~cd~dv~ 208 (248)
T KOG4754|consen 174 WLAKRPEKEIAVVTHSGFLRSLLKKIQKDCDPDVK 208 (248)
T ss_pred HHHhCccceEEEEEehHHHHHHHHHhccccCcccc
Confidence 99765 6679999999999999988754 444433
No 38
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.58 E-value=4e-14 Score=148.45 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=112.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH-cccCCcceEEechHHHHHHcCCCCCCcc-cCCCCHHHHHHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYL-RWLGHDTKHFNVGKYRRLKHGVNQSADF-FRADNPEGMEARNEVAALAMEDMIS 300 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L-~~~g~~~~~~~~D~~Rk~~~g~~~~~~f-~~~~~~~~~~~~~~va~~~l~~~~~ 300 (625)
+.+|+|+|+|||||||+|+.|++++ ++. +++.|.+|+.+.+......+ +...... .+.....+.+..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~-----~l~~D~~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 70 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAV-----NVNRDDLRQSLFGHGEWGEYKFTKEKED------LVTKAQEAAALA 70 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCE-----EEeccHHHHHhcCCCcccccccChHHHH------HHHHHHHHHHHH
Confidence 4689999999999999999999999 666 99999999877654321111 1111111 111111222223
Q ss_pred HHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHH
Q 006920 301 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 379 (625)
Q Consensus 301 ~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~ 379 (625)
.+. .|..+|+|+++..+..|+.+.++ .+.++.+.++.+.|+.+++.+|+..|... . .+++..+.+.+|++
T Consensus 71 ~l~-~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~-------~-~~~~~i~~~~~~~~ 141 (300)
T PHA02530 71 ALK-SGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGER-------A-VPEDVLRSMFKQMK 141 (300)
T ss_pred HHH-cCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcC-------C-CCHHHHHHHHHHHH
Confidence 343 45667999999999999999998 67788887888889988888887765211 1 56778888889999
Q ss_pred hhhhcccc----CCCCCeeEEeeccCCCCccceec
Q 006920 380 NYEKVYEP----VDEGSYIKMIDMVSGHGGQIQVN 410 (625)
Q Consensus 380 ~y~~~fEp----~~e~~~i~~id~~~~~g~~~~~~ 410 (625)
.|.....| ......+..+|. .+++..+
T Consensus 142 ~~~~~~~p~~~~~~~~~~~~~~D~----dgtl~~~ 172 (300)
T PHA02530 142 EYRGLVWPVYTADPGLPKAVIFDI----DGTLAKM 172 (300)
T ss_pred HhcCCCCceeccCCCCCCEEEEEC----CCcCcCC
Confidence 88765444 333356777888 5555544
No 39
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.57 E-value=1.3e-14 Score=164.33 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=114.9
Q ss_pred ccccccccccCCCCcccchhHHHHHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcc-cCCcceEEechHHHHH
Q 006920 187 IDLKLDTETKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRRL 265 (625)
Q Consensus 187 ~~~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~-~g~~~~~~~~D~~Rk~ 265 (625)
..+...+......|+|++.+.++++...+..++.+++.+|||+|+|||||||+|+.|++.|+. .|..+.++|.|.+|+.
T Consensus 356 t~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~ 435 (568)
T PRK05537 356 TELRRRLREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKH 435 (568)
T ss_pred HHHHHHHHCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHh
Confidence 334455678889999999999999988887778899999999999999999999999999997 7778889999999875
Q ss_pred HcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChH
Q 006920 266 KHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDR 344 (625)
Q Consensus 266 ~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e 344 (625)
+.| ...|...++...++....++..+ +. .|.+||+|++++..+.|+.++++ .+.+ .+++|++.++.+
T Consensus 436 l~g---e~~f~~~er~~~~~~l~~~a~~v-------~~-~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e 503 (568)
T PRK05537 436 LSS---ELGFSKEDRDLNILRIGFVASEI-------TK-NGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATPLE 503 (568)
T ss_pred ccC---CCCCCHHHHHHHHHHHHHHHHHH-------Hh-CCCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHH
Confidence 543 33343333333333233333222 22 56777999999999999999999 4444 456677788988
Q ss_pred HHHHHH
Q 006920 345 DIIERN 350 (625)
Q Consensus 345 ~i~~R~ 350 (625)
++.+|.
T Consensus 504 ~l~~R~ 509 (568)
T PRK05537 504 VCEQRD 509 (568)
T ss_pred HHHHhc
Confidence 777764
No 40
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=99.56 E-value=4.1e-14 Score=139.06 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=83.7
Q ss_pred cCCCCccEEEeccccccCCCCCCcCC-CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc-CCCcc
Q 006920 427 THLTPRPILLTRHGESRDNVRGRIGG-DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-GFPKI 504 (625)
Q Consensus 427 ~~~~~~~I~LVRHGes~~n~~~~~~g-D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~-g~~v~ 504 (625)
+.-.-++||||||||+.+...+.... +.|||++|++||+.++++|.+. ...+.|||||+.||+|||+.+. +.+++
T Consensus 50 ~~~~~~~L~LiRHGet~~~~~~~~~sD~RpLTerG~~qA~~lg~~L~~~---~~~d~I~sSpa~Ra~qTAe~ia~~~~v~ 126 (201)
T PRK15416 50 LAKQHPVVVLFRHAERCDRSDNQCLSDKTGITVKGTQDARELGKAFSAD---IPDYDLYSSNTVRTIQSATWFSAGKKLT 126 (201)
T ss_pred HhcCCCEEEEEeCccccCccCCCCCCCCCCCCHHHHHHHHHHHHHHhCC---CCCCEEEECCCHHHHHHHHHHhcCCCcE
Confidence 33444679999999983222121111 3699999999999999998743 2237999999999999999994 44555
Q ss_pred cccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEechHHHHHH
Q 006920 505 QWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRAL 584 (625)
Q Consensus 505 ~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~~~~VlIVsHg~vir~L 584 (625)
.++.|.|++.+ ....+..++.+. .+++|+||+|+..+..|
T Consensus 127 ~~~~Lye~~~~--------------------------------------~~~~i~~~i~~~--~~~tVLIVGHnp~i~~L 166 (201)
T PRK15416 127 VDKRLSDCGNG--------------------------------------IYSAIKDLQRKS--PDKNIVIFTHNHCLTYI 166 (201)
T ss_pred ecHHHhhcCch--------------------------------------hHHHHHHHHHhC--CCCEEEEEeCchhHHHH
Confidence 56656665431 111222233322 23789999999999999
Q ss_pred HHHHhCC
Q 006920 585 YAYFADR 591 (625)
Q Consensus 585 l~~l~~~ 591 (625)
.....+.
T Consensus 167 a~~~~~~ 173 (201)
T PRK15416 167 AKDKRGV 173 (201)
T ss_pred HHHhcCC
Confidence 9976653
No 41
>KOG3734 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=3.7e-14 Score=144.07 Aligned_cols=164 Identities=21% Similarity=0.210 Sum_probs=120.0
Q ss_pred CCCCccEEEeccccccCCCCCC------------c---------------C---C---CCCCCHHHHHHHHHHHHHHHHH
Q 006920 428 HLTPRPILLTRHGESRDNVRGR------------I---------------G---G---DTILSDAGEIYAKKLANFVEKR 474 (625)
Q Consensus 428 ~~~~~~I~LVRHGes~~n~~~~------------~---------------~---g---D~pLTe~G~~QA~~l~~~L~~~ 474 (625)
+...+.|++|||||+.++..+. + . + |+|||+.|..|++.+|+.|...
T Consensus 9 ~~~~~~i~vmRHgERvD~if~~~W~~~~~~~~~~y~~~d~n~p~~l~qr~~~~~~y~~d~pit~~g~~~~~~~gr~l~~a 88 (272)
T KOG3734|consen 9 IDVPRNIFVMRHGERVDNIFGKLWLKTCARPDGKYVPDDMNMPFRLPQRIRSPKGYPIDPPITVSGFIQCKLIGRELLNA 88 (272)
T ss_pred cCCCceEEEEEcccccccccchhhhhhhcCCCCCcCCCCccCCccccccccCcccCccCCCccchhHHHHHHHHHHHHhc
Confidence 4556899999999997632221 1 0 1 8999999999999999999877
Q ss_pred hcCCCCCEEEEcCcHHHHHHHHHh---cC----CCcccccccccccCCc----CC-CCCHHHHHhhChHHHHHHhcCccC
Q 006920 475 LKSERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDEINAGV----CD-GMTYEEIKKNMPEEYEARKKDKLR 542 (625)
Q Consensus 475 l~~~~~~~I~sSpl~Ra~qTA~~i---~g----~~v~~~~~L~Ei~~G~----~e-g~~~~ei~~~~p~~~~~~~~~~~~ 542 (625)
+..++.|||||..||+|||..+ .+ ..+.++|.|-|.-.-. ++ ..+..+++...+..-..... -+.
T Consensus 89 --~~~i~~ifcSPs~r~VqTa~~i~~~~g~e~~~~i~vePgL~e~~~~~~~~~~p~~is~~el~~~~~~VD~~y~P-~~~ 165 (272)
T KOG3734|consen 89 --GIAIDVIFCSPSLRCVQTAAKIKKGLGIEKKLKIRVEPGLFEPEKWPKDGKFPFFISPDELKFPGFPVDLNYDP-VYK 165 (272)
T ss_pred --CCCcceeecCCchhHHHHHHHHHHhhchhcCeeEEecchhcchhhhcccCCCCCcCCHHHHhccCCCcccccch-hhh
Confidence 7789999999999999999999 33 5788889888864321 11 22344444332211000000 012
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEechHHHHHHHHHHhCCCCC
Q 006920 543 YRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRALYAYFADRPLK 594 (625)
Q Consensus 543 ~~~p~gES~~d~~~Rv~~~i~~L~~~--~~~VlIVsHg~vir~Ll~~l~~~~~~ 594 (625)
..+-++||++++..|...++.+|..+ ++++|||+||..+....+.+.|.+..
T Consensus 166 ~~~~~~es~e~~~~R~~~~~k~i~~k~~~~~lLIV~H~~sv~~~~~~l~~~~~~ 219 (272)
T KOG3734|consen 166 ETPRWGESLEDCNDRIQKVFKAIADKYPNENLLIVAHGSSVDTCSAQLQGLPVR 219 (272)
T ss_pred hcccccccHHHHHHHHHHHHHHHHHhcCCCceEEEeccchHHHHHHHhcCCCce
Confidence 23457899999999999999999886 66799999999999999999885543
No 42
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.53 E-value=5e-14 Score=134.84 Aligned_cols=138 Identities=18% Similarity=0.242 Sum_probs=102.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHH-HHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVA-ALAMEDMISWMH 303 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va-~~~l~~~~~~l~ 303 (625)
=|+|+|+||+||||+++.||+.|+.. ++|+|.+.+...|++..+ +|...++..++.++..+ ..+..
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~-----F~D~D~~Ie~~~g~sI~e-IF~~~GE~~FR~~E~~vl~~l~~------- 70 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLP-----FIDTDQEIEKRTGMSIAE-IFEEEGEEGFRRLETEVLKELLE------- 70 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCC-----cccchHHHHHHHCcCHHH-HHHHHhHHHHHHHHHHHHHHHhh-------
Confidence 38999999999999999999999999 999999999999988774 55666788887766433 33333
Q ss_pred cCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCH-HHHHHHHHHHHHhh
Q 006920 304 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRLANY 381 (625)
Q Consensus 304 ~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~-e~~~~~~~~rl~~y 381 (625)
.+.. |+ +|.+-.-..+..+++ .+++ .++|| .++.+.+++|.- ....+|.+.+. ++ +.+.+.|.+|...|
T Consensus 71 -~~~~-Vi-aTGGG~v~~~enr~~l~~~g-~vv~L--~~~~e~l~~Rl~--~~~~RPll~~~-~~~~~l~~L~~~R~~~Y 141 (172)
T COG0703 71 -EDNA-VI-ATGGGAVLSEENRNLLKKRG-IVVYL--DAPFETLYERLQ--RDRKRPLLQTE-DPREELEELLEERQPLY 141 (172)
T ss_pred -cCCe-EE-ECCCccccCHHHHHHHHhCC-eEEEE--eCCHHHHHHHhc--cccCCCcccCC-ChHHHHHHHHHHHHHHH
Confidence 3333 55 555555555566666 4444 56777 567766666654 33568999988 88 66899999999999
Q ss_pred hhc
Q 006920 382 EKV 384 (625)
Q Consensus 382 ~~~ 384 (625)
++.
T Consensus 142 ~e~ 144 (172)
T COG0703 142 REV 144 (172)
T ss_pred HHh
Confidence 874
No 43
>KOG4609 consensus Predicted phosphoglycerate mutase [General function prediction only]
Probab=99.53 E-value=4.9e-14 Score=136.19 Aligned_cols=164 Identities=18% Similarity=0.188 Sum_probs=117.2
Q ss_pred CCccEEEeccccccCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc-----CCCcc
Q 006920 430 TPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-----GFPKI 504 (625)
Q Consensus 430 ~~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~-----g~~v~ 504 (625)
..+.|+||||||....- .-..||+.|++||+.+|+.|+.. +++++.|..|++.||.+||.+|+ +....
T Consensus 93 atRhI~LiRHgeY~~~g-----~~~hLTelGReQAE~tGkRL~el--glk~d~vv~StM~RA~ETadIIlk~l~d~lk~~ 165 (284)
T KOG4609|consen 93 ATRHIFLIRHGEYHVDG-----SLEHLTELGREQAELTGKRLAEL--GLKFDKVVASTMVRATETADIILKHLPDDLKRV 165 (284)
T ss_pred hhceEEEEeccceeccC-----chhhcchhhHHHHHHHhHHHHHc--CCchhhhhhhhhhhhHHHHHHHHHhCCCcccee
Confidence 35889999999974321 12389999999999999999988 88999999999999999999993 23344
Q ss_pred cccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHc-------CCCcEEEEec
Q 006920 505 QWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER-------QRAPVVVISH 577 (625)
Q Consensus 505 ~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~-------~~~~VlIVsH 577 (625)
..+.|.|=. ++.- .| ....|... .--|..--.|++.++..... ++.-.|||+|
T Consensus 166 s~~ll~EGa-------P~pp----dP-p~k~wrp~--------~~qy~rdgaRIEaafRryfhRA~p~QeedSy~liV~H 225 (284)
T KOG4609|consen 166 SCPLLREGA-------PYPP----DP-PVKHWRPL--------DPQYYRDGARIEAAFRRYFHRASPSQEEDSYELIVCH 225 (284)
T ss_pred cccccccCC-------CCCC----CC-CcccCCcc--------ChHhhhcchHHHHHHHHHHhhcCcccccccEEEEEee
Confidence 455555521 1100 00 00111111 11111223677777666532 2445899999
Q ss_pred hHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEEEE
Q 006920 578 QAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKR 620 (625)
Q Consensus 578 g~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~~r 620 (625)
+++||-+++..+.+|++.+..+++.+|+|+.|...+.|....|
T Consensus 226 aNVIRY~icRALq~PpegWlR~nlnh~SiTWlti~PsG~vsvr 268 (284)
T KOG4609|consen 226 ANVIRYFICRALQFPPEGWLRMNLNHCSITWLTISPSGHVSVR 268 (284)
T ss_pred cchhhhhhhhhhcCCcchhheecccCcceEEEEEccCCcEEEE
Confidence 9999999999999999999999999999999999876655443
No 44
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.51 E-value=2.2e-13 Score=128.23 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=91.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHH------HcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL------KHGVNQSADFFRADNPEGMEARNEVAALAMEDM 298 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~------~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~ 298 (625)
||+|+|.|||||||+|+.|++.+++. +++.|.+++. ..|.. +............. ..+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~-----~i~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------~~~ 64 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAP-----FIDGDDLHPPANIAKMAAGIP----LNDEDRWPWLQALT-------DAL 64 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCE-----EEeCcccccHHHHHHHHcCCC----CCccchhhHHHHHH-------HHH
Confidence 58999999999999999999998877 8899988763 22221 11111222222221 111
Q ss_pred HHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHH
Q 006920 299 ISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 378 (625)
Q Consensus 299 ~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl 378 (625)
...+...+..+|+|+++..+..|+.+++++ ++..+.+++|.|+.+++.+|+.+|. . +.. ..+ .+
T Consensus 65 ~~~l~~~~~~vVid~~~~~~~~r~~~~~~~-~~~~~~~v~l~~~~~~~~~R~~~R~-~---~~~---~~~--------~~ 128 (150)
T cd02021 65 LAKLASAGEGVVVACSALKRIYRDILRGGA-ANPRVRFVHLDGPREVLAERLAARK-G---HFM---PAD--------LL 128 (150)
T ss_pred HHHHHhCCCCEEEEeccccHHHHHHHHhcC-CCCCEEEEEEECCHHHHHHHHHhcc-c---CCC---CHH--------HH
Confidence 222223455679999999999999988887 6778888889999877777665542 2 111 222 34
Q ss_pred HhhhhccccCCCC-CeeEEee
Q 006920 379 ANYEKVYEPVDEG-SYIKMID 398 (625)
Q Consensus 379 ~~y~~~fEp~~e~-~~i~~id 398 (625)
..+...|||+++. .....||
T Consensus 129 ~~~~~~~~~p~~~~~~~~~~~ 149 (150)
T cd02021 129 DSQFETLEPPGEDEEDVIVID 149 (150)
T ss_pred HHHHHHhcCCCCCCCCeEEcc
Confidence 5555678888764 4444444
No 45
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.50 E-value=4e-13 Score=150.00 Aligned_cols=138 Identities=14% Similarity=0.121 Sum_probs=102.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
...|.||+|+|+|||||||+|+.+++.+++. +++.|.+.. +..|+..+.
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~-----~vn~D~lg~--------------------------~~~~~~~a~ 414 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYK-----HVNADTLGS--------------------------TQNCLTACE 414 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCe-----EECcHHHHH--------------------------HHHHHHHHH
Confidence 4678999999999999999999999998888 899886621 122444445
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHH
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 378 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl 378 (625)
..|.. |..||+|+||..++.|..+.++ .++|+++.+++|.++.+++..|+..|.. .+.++..-++. .+
T Consensus 415 ~~L~~-G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~---~~~s~~~vp~~-------v~ 483 (526)
T TIGR01663 415 RALDQ-GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL---SDSAHIKIKDM-------VF 483 (526)
T ss_pred HHHhC-CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc---CCcccCCCCHH-------HH
Confidence 55554 4556999999999999999999 7899999999999999888888876643 22233312232 45
Q ss_pred HhhhhccccCCCC---CeeEEeec
Q 006920 379 ANYEKVYEPVDEG---SYIKMIDM 399 (625)
Q Consensus 379 ~~y~~~fEp~~e~---~~i~~id~ 399 (625)
..|.+.||+++.. ..|..||+
T Consensus 484 ~~~~k~fE~Pt~~EGF~~I~~v~f 507 (526)
T TIGR01663 484 NGMKKKFEAPALAEGFIAIHEINF 507 (526)
T ss_pred HHHHhhCCCCCcccCceEEEEEeC
Confidence 6667777877543 55666666
No 46
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.48 E-value=3.9e-13 Score=127.14 Aligned_cols=116 Identities=20% Similarity=0.160 Sum_probs=85.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 304 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~ 304 (625)
+|+|+|+|||||||+|+.|++.+...|..+.+++.|.+|+.+.+. ..+....+.+.++..... ...+.+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~---~~~~~~~~~~~~~~~~~~--------a~~l~~ 69 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKD---LGFSREDREENIRRIAEV--------AKLLAD 69 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhc---cCCCcchHHHHHHHHHHH--------HHHHHh
Confidence 589999999999999999999998777777789999999855431 122222233332222222 223344
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHH
Q 006920 305 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIR 352 (625)
Q Consensus 305 ~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~ 352 (625)
+|.+||+|+++..+..|..++.+.+ +.++.+++|.|+.+++.+|..+
T Consensus 70 ~G~~VIid~~~~~~~~R~~~~~l~~-~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 70 AGLIVIAAFISPYREDREAARKIIG-GGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred CCCEEEEccCCCCHHHHHHHHHhcC-CCCEEEEEEeCCHHHHHHhCch
Confidence 7888999999999999999998855 7889899999999888877543
No 47
>PRK06762 hypothetical protein; Provisional
Probab=99.45 E-value=1.2e-12 Score=125.25 Aligned_cols=114 Identities=15% Similarity=0.061 Sum_probs=82.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 302 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l 302 (625)
|.+|+|+|+|||||||+|+.|+++++ ....+++.|.+|+.+.+.... .+....+........ .
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~---~~~~~i~~D~~r~~l~~~~~~------~~~~~~~~~~~~~~~--------~ 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG---RGTLLVSQDVVRRDMLRVKDG------PGNLSIDLIEQLVRY--------G 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEecHHHHHHHhccccCC------CCCcCHHHHHHHHHH--------H
Confidence 57999999999999999999999984 234478999999865432111 111122222222222 2
Q ss_pred HcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 303 HEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 303 ~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
.+.|.+||+|+++....+|+.++.+ ...++++.++++.+|.+++++|+.+|
T Consensus 65 ~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R 116 (166)
T PRK06762 65 LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTR 116 (166)
T ss_pred HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcc
Confidence 2367788999999988899999988 66677788888899999999998766
No 48
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=99.45 E-value=3.1e-13 Score=124.76 Aligned_cols=119 Identities=24% Similarity=0.241 Sum_probs=103.2
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM 298 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~ 298 (625)
..++..+|||+||+||||||+|-+|.+.|...|.-++++|.|.+| +|++.+..|..+++.+++++..++++...+
T Consensus 27 ~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvR---hGLN~DL~F~a~dR~ENIRRigeVaKLFAD-- 101 (207)
T KOG0635|consen 27 LKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVR---HGLNKDLGFKAEDRNENIRRIGEVAKLFAD-- 101 (207)
T ss_pred hcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccc---cccccccCcchhhhhhhHHHHHHHHHHHhc--
Confidence 367889999999999999999999999999999999999999885 799999999999999999999999998777
Q ss_pred HHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHH
Q 006920 299 ISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 349 (625)
Q Consensus 299 ~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R 349 (625)
.|.+.|-.-..+.+..|+..+++.+.+ +|+-+.+.||.+.+..|
T Consensus 102 ------ag~iciaSlISPYR~dRdacRel~~~~-~FiEvfmdvpl~vcE~R 145 (207)
T KOG0635|consen 102 ------AGVICIASLISPYRKDRDACRELLPEG-DFIEVFMDVPLEVCEAR 145 (207)
T ss_pred ------cceeeeehhcCchhccHHHHHHhccCC-CeEEEEecCcHHHhhcc
Confidence 788878888889999999999994434 56666667787665544
No 49
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.44 E-value=1.8e-12 Score=132.65 Aligned_cols=115 Identities=21% Similarity=0.180 Sum_probs=84.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 304 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~ 304 (625)
||+|+|+|||||||+|++|++++...|.++.+++.|.+|+.+.. +....+... .......+...+.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~-------~~~~~e~~~------~~~~~~~i~~~l~- 66 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV-------WKEKYEEFI------RDSTLYLIKTALK- 66 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH-------hhHHhHHHH------HHHHHHHHHHHHh-
Confidence 58999999999999999999999888888889999988875410 011111111 1111122223333
Q ss_pred CCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 305 GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 305 ~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
.+..||+|+++.....|..+..+ ...+.+++.++|.|+.+.+++|+..|
T Consensus 67 ~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R 116 (249)
T TIGR03574 67 NKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER 116 (249)
T ss_pred CCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC
Confidence 45667999999999999888888 67788888889999999999998765
No 50
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.39 E-value=4.1e-12 Score=123.99 Aligned_cols=119 Identities=24% Similarity=0.249 Sum_probs=85.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
.+++.+|+|+|+|||||||+|+.|+..+...|..+.+++.|.+|+.+.+ ...|...++...+.....++
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~---~~~~~~~~~~~~~~~~~~~~-------- 83 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNK---DLGFSEEDRKENIRRIGEVA-------- 83 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhcc---ccCCCHHHHHHHHHHHHHHH--------
Confidence 4568899999999999999999999999766777779999999876543 11222222222222222222
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHH
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 350 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~ 350 (625)
..+...|.+||+|++++.+..|+.++.+.+. .+++++++.|+.+.+.+|+
T Consensus 84 ~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~-~~~~~v~l~~~~e~~~~R~ 133 (184)
T TIGR00455 84 KLFVRNGIIVITSFISPYRADRQMVRELIEK-GEFIEVFVDCPLEVCEQRD 133 (184)
T ss_pred HHHHcCCCEEEEecCCCCHHHHHHHHHhCcC-CCeEEEEEeCCHHHHHHhC
Confidence 2234478888999999999999999998432 2566777789988888774
No 51
>COG4639 Predicted kinase [General function prediction only]
Probab=99.38 E-value=8.4e-12 Score=116.46 Aligned_cols=114 Identities=22% Similarity=0.216 Sum_probs=82.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 302 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l 302 (625)
+.+++|+|.|||||||+|+.. ..+.++++.|++|..+ |.....+....... .+...+...+.+.|
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n-------~~~~~~lsld~~r~~l-g~~~~~e~sqk~~~-------~~~~~l~~~l~qrl 66 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN-------FLQNYVLSLDDLRLLL-GVSASKENSQKNDE-------LVWDILYKQLEQRL 66 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh-------CCCcceecHHHHHHHh-hhchhhhhccccHH-------HHHHHHHHHHHHHH
Confidence 468999999999999999875 2334589999999755 32222221111111 22333333333444
Q ss_pred HcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHH
Q 006920 303 HEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 352 (625)
Q Consensus 303 ~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~ 352 (625)
. .|...|+||||..++.|..+..| ..+|+..++|+++.|.+.+.+||..
T Consensus 67 ~-~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~ 116 (168)
T COG4639 67 R-RGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKL 116 (168)
T ss_pred H-cCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhc
Confidence 4 45666999999999999999999 8899999999999999999999953
No 52
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.37 E-value=7.7e-12 Score=129.46 Aligned_cols=117 Identities=19% Similarity=0.267 Sum_probs=74.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 304 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~ 304 (625)
||+|||+|||||||+|+.|++++...+.++.+++.|.+. ..... |.+...+... +.. +.......+.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-----~~~~~-y~~~~~Ek~~--R~~----l~s~v~r~ls- 69 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-----IDRND-YADSKKEKEA--RGS----LKSAVERALS- 69 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH------TTSS-S--GGGHHHH--HHH----HHHHHHHHHT-
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-----cchhh-hhchhhhHHH--HHH----HHHHHHHhhc-
Confidence 799999999999999999999999888888899876665 11221 2222212111 111 1111222333
Q ss_pred CCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhh
Q 006920 305 GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 305 ~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr 354 (625)
...+||+|+.|-.+..|-.+..+ ++.+..+..|+|.|+.+.+++||..|.
T Consensus 70 ~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~ 120 (270)
T PF08433_consen 70 KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRP 120 (270)
T ss_dssp T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT
T ss_pred cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccC
Confidence 35788999999999999999999 889999999999999999999998774
No 53
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.35 E-value=7.4e-12 Score=121.32 Aligned_cols=125 Identities=15% Similarity=0.078 Sum_probs=79.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCC----CcccCCCCHHHHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS----ADFFRADNPEGMEARNEVAALAMEDM 298 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~----~~f~~~~~~~~~~~~~~va~~~l~~~ 298 (625)
+.+|+|+|+|||||||+|+.|++.++.. ..+++.|.++..+.+.... ..+.....+..-.....++......+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 78 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEP---WLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAV 78 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCC---ccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHH
Confidence 3489999999999999999999998643 1256888887754322111 00111000000012223343333333
Q ss_pred HHHHHcCCcEEEEecCCC-cHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 299 ISWMHEGGQVGIFDATNS-SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 299 ~~~l~~~g~vvIvDatn~-~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
...+ ..|..||+|+++. ....|+.++.+. +.++.+|+|.|+.+++.+|+.+|
T Consensus 79 ~~~l-~~G~~VIvD~~~~~~~~~r~~~~~~~--~~~~~~v~l~~~~~~l~~R~~~R 131 (175)
T cd00227 79 AAMA-RAGANVIADDVFLGRAALQDCWRSFV--GLDVLWVGVRCPGEVAEGRETAR 131 (175)
T ss_pred HHHH-hCCCcEEEeeeccCCHHHHHHHHHhc--CCCEEEEEEECCHHHHHHHHHhc
Confidence 3333 3667779999998 677787777653 46788999999998888888765
No 54
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.35 E-value=6.7e-12 Score=121.91 Aligned_cols=148 Identities=21% Similarity=0.165 Sum_probs=98.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 304 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~ 304 (625)
+|+++|+|||||||+|+.|++.|...+.++.++..|..+-.+ .+++++-..+...+...+-+.+++..+. .
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~-----~DEslpi~ke~yres~~ks~~rlldSal---k- 73 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGIL-----WDESLPILKEVYRESFLKSVERLLDSAL---K- 73 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhhee-----cccccchHHHHHHHHHHHHHHHHHHHHh---c-
Confidence 799999999999999999999999888888888776544321 1122222212222222233333444332 2
Q ss_pred CCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHhhhh
Q 006920 305 GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEK 383 (625)
Q Consensus 305 ~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~y~~ 383 (625)
...||+|++|-....|..+... .+......+|++.|+.+.+++||..+.. +-|+++++.+..|
T Consensus 74 -n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erge---------pip~Evl~qly~R------ 137 (261)
T COG4088 74 -NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGE---------PIPEEVLRQLYDR------ 137 (261)
T ss_pred -ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCC---------CCCHHHHHHHHHh------
Confidence 4577999999999988888777 6777778888889999999999955421 1456666665554
Q ss_pred ccccCCCC----CeeEEee
Q 006920 384 VYEPVDEG----SYIKMID 398 (625)
Q Consensus 384 ~fEp~~e~----~~i~~id 398 (625)
||+++.. +...+||
T Consensus 138 -fEePn~~~rWDspll~id 155 (261)
T COG4088 138 -FEEPNPDRRWDSPLLVID 155 (261)
T ss_pred -hcCCCCCccccCceEEEe
Confidence 5555544 4444555
No 55
>PRK13948 shikimate kinase; Provisional
Probab=99.35 E-value=1e-11 Score=121.34 Aligned_cols=140 Identities=19% Similarity=0.190 Sum_probs=95.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHH-HHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-EVAALAMEDM 298 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~-~va~~~l~~~ 298 (625)
...+..|+|+|+|||||||+|+.|++.|++. ++|.|.+++...|.+..+ +|...++..++..+ +++..++.
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~-----~iD~D~~ie~~~g~si~~-if~~~Ge~~fR~~E~~~l~~l~~-- 78 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLH-----FIDTDRYIERVTGKSIPE-IFRHLGEAYFRRCEAEVVRRLTR-- 78 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCC-----EEECCHHHHHHHhCCHHH-HHHHhCHHHHHHHHHHHHHHHHh--
Confidence 4567899999999999999999999999999 999999999898887663 44555666665444 33333322
Q ss_pred HHHHHcCCcEEEEe---cCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHH
Q 006920 299 ISWMHEGGQVGIFD---ATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 375 (625)
Q Consensus 299 ~~~l~~~g~vvIvD---atn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~ 375 (625)
.+.. |+. ++...++.|+.++ +. ..++|| .++.+.+.+|. .. ..+|.+.+....+.+.+.|.
T Consensus 79 ------~~~~-VIa~GgG~v~~~~n~~~l~---~~-g~vV~L--~~~~e~l~~Rl-~~--~~RPll~~~~~~~~l~~l~~ 142 (182)
T PRK13948 79 ------LDYA-VISLGGGTFMHEENRRKLL---SR-GPVVVL--WASPETIYERT-RP--GDRPLLQVEDPLGRIRTLLN 142 (182)
T ss_pred ------cCCe-EEECCCcEEcCHHHHHHHH---cC-CeEEEE--ECCHHHHHHHh-cC--CCCCCCCCCChHHHHHHHHH
Confidence 3344 443 3444555555543 33 456677 47777777765 33 35788765412466788888
Q ss_pred HHHHhhhh
Q 006920 376 NRLANYEK 383 (625)
Q Consensus 376 ~rl~~y~~ 383 (625)
+|.+.|..
T Consensus 143 ~R~~~Y~~ 150 (182)
T PRK13948 143 EREPVYRQ 150 (182)
T ss_pred HHHHHHHh
Confidence 89888854
No 56
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.35 E-value=1.1e-11 Score=119.77 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=82.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 300 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~ 300 (625)
+++.+|+|+|+|||||||+|+.|++.+...|.++.+++.|.+|+.+.. ...+...++...++....++..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~---~~~~~~~~r~~~~~~~~~~a~~------- 71 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSK---GLGFSKEDRDTNIRRIGFVANL------- 71 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhc---CCCCChhhHHHHHHHHHHHHHH-------
Confidence 457799999999999999999999999877777889999999875532 1122233334333333333222
Q ss_pred HHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHH
Q 006920 301 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 350 (625)
Q Consensus 301 ~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~ 350 (625)
+...|.+||+|++++....|+.++.+.. .+.++++.|+.+++.+|+
T Consensus 72 -~~~~g~~vi~~~~~~~~~~~~~l~~~~~---~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 72 -LTRHGVIVLVSAISPYRETREEVRANIG---NFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred -HHhCCCEEEEecCCCCHHHHHHHHhhcC---CeEEEEEcCCHHHHHHhC
Confidence 2336788899999988788877776632 355666788988888885
No 57
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.34 E-value=8.8e-12 Score=119.00 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=72.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH------HHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY------RRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~------Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
|+|+|+|||||||+|+.|++.+++. +++.|++ ++...|.... ..... .....+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~-----~v~~D~~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~ 64 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAK-----FIEGDDLHPAANIEKMSAGIPLN----DDDRW-------PWLQNLNDAST 64 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCe-----EEeCccccChHHHHHHHcCCCCC----hhhHH-------HHHHHHHHHHH
Confidence 5799999999999999999999877 8888875 3333332211 11111 22223333333
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
..+..++. +|+|+++..+..|+.++ ..+..+.++++.|+.+.+.+|...|
T Consensus 65 ~~l~~~~~-~Vi~~t~~~~~~r~~~~---~~~~~~~~i~l~~~~e~~~~R~~~R 114 (163)
T TIGR01313 65 AAAAKNKV-GIITCSALKRHYRDILR---EAEPNLHFIYLSGDKDVILERMKAR 114 (163)
T ss_pred HHHhcCCC-EEEEecccHHHHHHHHH---hcCCCEEEEEEeCCHHHHHHHHHhc
Confidence 44444544 49999999888887666 4566777788889988887777655
No 58
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.33 E-value=1.8e-11 Score=121.13 Aligned_cols=118 Identities=25% Similarity=0.257 Sum_probs=87.1
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM 298 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~ 298 (625)
.+++|.+|+|+|+|||||||+|+.|++.|...|..+.+++.|.+++.+.+ ...+...++.+.++....++..+++
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~---~~~~~~~~~~~~~~~l~~~a~~~~~-- 94 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCS---DLGFSDADRKENIRRVGEVAKLMVD-- 94 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhh---cCCcCcccHHHHHHHHHHHHHHHhh--
Confidence 45789999999999999999999999999766777889999999875443 1233334444444444444433333
Q ss_pred HHHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHH
Q 006920 299 ISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIER 349 (625)
Q Consensus 299 ~~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R 349 (625)
.|.+||.+..++.++.|+.++++ .+. .+++|++.|+.+.+.+|
T Consensus 95 ------~G~~VI~~~~~~~~~~R~~~r~~l~~~--~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 95 ------AGLVVLTAFISPHRAERQMVRERLGEG--EFIEVFVDTPLAICEAR 138 (198)
T ss_pred ------CCCEEEEEeCCCCHHHHHHHHHHcccC--CEEEEEEcCCHHHHHhc
Confidence 67787888888899999999999 444 35556778898888877
No 59
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.31 E-value=9.8e-12 Score=132.12 Aligned_cols=149 Identities=17% Similarity=0.155 Sum_probs=99.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc-ccCCcceEEechHHH-----HHHcCCCCCCcccCCCCHHHHHHHHHHHH------
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYR-----RLKHGVNQSADFFRADNPEGMEARNEVAA------ 292 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~-~~g~~~~~~~~D~~R-----k~~~g~~~~~~f~~~~~~~~~~~~~~va~------ 292 (625)
+++|+|+|||||||+++.|+..|. ..|..+.+++.|++. +...|.+.+..| +..+..-.+.++....
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~-k~~R~~i~~~le~~v~a~~~g~ 79 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQW-KQFRQELLKYLEHFLVAVINGS 79 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHH-HHHHHHHHHHHHHHHHHhcCcc
Confidence 478999999999999999999997 689999999999876 333344333222 1111111111111110
Q ss_pred ----------HHHHHHHHHHHc------------------------CCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEE
Q 006920 293 ----------LAMEDMISWMHE------------------------GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFL 337 (625)
Q Consensus 293 ----------~~l~~~~~~l~~------------------------~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfl 337 (625)
.+..+....|++ ....+|+|++|..+..|..+..+ ...+..+..|
T Consensus 80 ~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V 159 (340)
T TIGR03575 80 ELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQL 159 (340)
T ss_pred cccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 001111122222 23468999999999999999999 7788899999
Q ss_pred EEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHhhhhccccCCC
Q 006920 338 ETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEPVDE 390 (625)
Q Consensus 338 e~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~y~~~fEp~~e 390 (625)
+|.||.+++++||.+|. ..+++. .++.+...||+++.
T Consensus 160 ~ld~ple~~l~RN~~R~----~~v~de------------vie~m~~r~E~P~~ 196 (340)
T TIGR03575 160 FLDCPVESCLLRNKQRP----VPLPDE------------TIQLMGRKIEKPNP 196 (340)
T ss_pred EEeCCHHHHHHHHhcCC----CCCCHH------------HHHHHHHHhcCCCC
Confidence 99999999999997763 223332 55666667787764
No 60
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.31 E-value=1.9e-11 Score=141.06 Aligned_cols=172 Identities=16% Similarity=0.139 Sum_probs=108.1
Q ss_pred ccceeeeccCCcccccccc-----ccccccc-ccccccccCCCCcccchhHHHHHHHHhcCCCCCCcEEEEEEccCCCCH
Q 006920 163 RGLFVDRGVGSPRLVKSAS-----ASTFNID-LKLDTETKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGK 236 (625)
Q Consensus 163 ~~~~~~~~~~~p~~~r~~~-----~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~p~lIvl~GLPGSGK 236 (625)
+-+.++.....|.+-|--. ..+..-+ +...++ ....|.|..- ...+..+. . +...+|.+|+|+|+|||||
T Consensus 398 ~pi~~e~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~~-~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~i~~~G~~gsGK 473 (632)
T PRK05506 398 APIAFDPYARNRTTGSFILIDRLTNATVGAGMIDFALR-RATNVHWQAS-DVSREARA-A-RKGQKPATVWFTGLSGSGK 473 (632)
T ss_pred CEEeeeeccccccCceEEEEeccCCceEEEEEECcccc-cccccccccc-ccCHHHHH-H-HhCCCcEEEEecCCCCchH
Confidence 4566676666666555211 1111111 112222 3444677443 22222222 2 2456799999999999999
Q ss_pred HHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCCC
Q 006920 237 TFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNS 316 (625)
Q Consensus 237 STlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~~g~vvIvDatn~ 316 (625)
||+|+.|+++|...|..+.+++.|.+|+.+.+ ...+.+.++...++....++.. +...|.+||+|++++
T Consensus 474 st~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~---~~~~~~~~r~~~~~~l~~~a~~--------~~~~G~~Vivda~~~ 542 (632)
T PRK05506 474 STIANLVERRLHALGRHTYLLDGDNVRHGLNR---DLGFSDADRVENIRRVAEVARL--------MADAGLIVLVSFISP 542 (632)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcChhhhhccCC---CCCCCHHHHHHHHHHHHHHHHH--------HHhCCCEEEEECCCC
Confidence 99999999999877778889999999985532 1222222233333322222222 234678889999999
Q ss_pred cHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHH
Q 006920 317 SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 350 (625)
Q Consensus 317 ~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~ 350 (625)
++..|+.++++.... .+.+++|.++.+.+.+|+
T Consensus 543 ~~~~R~~~r~l~~~~-~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 543 FREERELARALHGEG-EFVEVFVDTPLEVCEARD 575 (632)
T ss_pred CHHHHHHHHHhcccC-CeEEEEECCCHHHHHhhC
Confidence 999999999884322 566777889988888773
No 61
>PRK00625 shikimate kinase; Provisional
Probab=99.30 E-value=2.7e-11 Score=117.45 Aligned_cols=137 Identities=15% Similarity=0.114 Sum_probs=85.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCC---CCCcccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVN---QSADFFRADNPEGMEARNEVAALAMEDMISW 301 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~---~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~ 301 (625)
.|+|+|+|||||||+|+.|++++++. ++|.|.+.+...|.. ...++|...+++.++..+..+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~-----~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~------- 69 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLP-----FFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTS------- 69 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC-----EEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHH-------
Confidence 49999999999999999999999999 999999877766651 223445555566665554322221
Q ss_pred HHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 006920 302 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 381 (625)
Q Consensus 302 l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~y 381 (625)
+.. ... |++.........+.+..+.. +..++|| .++.+.+.+|...| |...+....+.+.+.|.+|.+.|
T Consensus 70 l~~-~~~-VIs~GGg~~~~~e~~~~l~~-~~~Vv~L--~~~~e~l~~Rl~~R-----~~~~~~~~~~~~~~ll~~R~~~Y 139 (173)
T PRK00625 70 LPV-IPS-IVALGGGTLMIEPSYAHIRN-RGLLVLL--SLPIATIYQRLQKR-----GLPERLKHAPSLEEILSQRIDRM 139 (173)
T ss_pred hcc-CCe-EEECCCCccCCHHHHHHHhc-CCEEEEE--ECCHHHHHHHHhcC-----CCCcccCcHHHHHHHHHHHHHHH
Confidence 222 334 34333333333333333333 3446666 56777777766543 22221113567788899999999
Q ss_pred hh
Q 006920 382 EK 383 (625)
Q Consensus 382 ~~ 383 (625)
++
T Consensus 140 ~~ 141 (173)
T PRK00625 140 RS 141 (173)
T ss_pred HH
Confidence 76
No 62
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.30 E-value=3.2e-11 Score=115.84 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=88.0
Q ss_pred EccCCCCHHHHHHHHHHHHcccCCcceEEechH------HHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006920 229 VGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK------YRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 302 (625)
Q Consensus 229 ~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~------~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l 302 (625)
+|+|||||||+++.|+..++.. ++++|. +|+...|.... +.............+. ..+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~-----~~~~d~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~-------~~~ 64 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAA-----FLDGDFLHPRRNIEKMASGEPLN----DDDRKPWLQALNDAAF-------AMQ 64 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCe-----EEeCccCCchhhhccccCCCCCC----hhhHHHHHHHHHHHHH-------HHH
Confidence 5999999999999999999877 777776 44444343222 1111222222222221 222
Q ss_pred HcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHhhh
Q 006920 303 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 382 (625)
Q Consensus 303 ~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~y~ 382 (625)
..++..||+ +++..+.+|+.+++ .++++.+|+|.|+.+.+.+|...|. . +++ +++ .+..+.
T Consensus 65 ~~~~~~viv-~s~~~~~~r~~~~~---~~~~~~~v~l~a~~~~l~~Rl~~R~-~---~~a---~~~--------vl~~Q~ 125 (163)
T PRK11545 65 RTNKVSLIV-CSALKKHYRDLLRE---GNPNLSFIYLKGDFDVIESRLKARK-G---HFF---KTQ--------MLVTQF 125 (163)
T ss_pred HcCCceEEE-EecchHHHHHHHHc---cCCCEEEEEEECCHHHHHHHHHhcc-C---CCC---CHH--------HHHHHH
Confidence 335655555 89999888877765 5778999999999877777765553 2 332 556 555666
Q ss_pred hccccCCCC-CeeEEeec
Q 006920 383 KVYEPVDEG-SYIKMIDM 399 (625)
Q Consensus 383 ~~fEp~~e~-~~i~~id~ 399 (625)
..+||+++. ..+..||+
T Consensus 126 ~~~ep~~~~e~~~~~id~ 143 (163)
T PRK11545 126 ETLQEPGADETDVLVVDI 143 (163)
T ss_pred HHcCCCCCCCCCEEEEeC
Confidence 778988654 45677887
No 63
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=8.8e-11 Score=109.25 Aligned_cols=153 Identities=16% Similarity=0.164 Sum_probs=98.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
.-+.+|+++|.+||||||+|++|++.|++..++.+-|+.-. ++|+..|+.-. +.++.-+....+..+++.
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLn----D~DR~pWL~~i~~~~~~~----- 80 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLN----DDDRWPWLKKIAVELRKA----- 80 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCC----cccccHHHHHHHHHHHHH-----
Confidence 44678999999999999999999999999966666665543 44555555443 344444433333222222
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHHHc-------CCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHH
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKMAE-------GNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 372 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l~~-------~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~ 372 (625)
+. .|+.||+.|+.+++.+|+.++.-.+ ....+.|+....+.+++.+|...|.. .|.-. +
T Consensus 81 --l~-~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~g----HFMp~---~---- 146 (191)
T KOG3354|consen 81 --LA-SGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKG----HFMPA---D---- 146 (191)
T ss_pred --hh-cCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccc----ccCCH---H----
Confidence 22 5666799999999999999998522 12456777777888888888766532 34311 2
Q ss_pred HHHHHHHhhhhccccCCCC-CeeEEeecc
Q 006920 373 DFKNRLANYEKVYEPVDEG-SYIKMIDMV 400 (625)
Q Consensus 373 ~~~~rl~~y~~~fEp~~e~-~~i~~id~~ 400 (625)
.++-+-...|+++.+ +.|+-|+++
T Consensus 147 ----lleSQf~~LE~p~~~e~div~isv~ 171 (191)
T KOG3354|consen 147 ----LLESQFATLEAPDADEEDIVTISVK 171 (191)
T ss_pred ----HHHHHHHhccCCCCCccceEEEeec
Confidence 233333344444444 577778873
No 64
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=3.8e-11 Score=111.20 Aligned_cols=141 Identities=17% Similarity=0.151 Sum_probs=90.4
Q ss_pred EccCCCCHHHHHHHHHHHHcccCCcceEEech-HHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 006920 229 VGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG-KYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQ 307 (625)
Q Consensus 229 ~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D-~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~~g~ 307 (625)
+|.+||||||+|++||++|++.+++.|-|+.- .+.|+-.|++-. ++++.-..+.....+.. ... ++.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~----DdDR~pWL~~l~~~~~~-------~~~-~~~ 68 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLN----DDDRWPWLEALGDAAAS-------LAQ-KNK 68 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCC----cchhhHHHHHHHHHHHH-------hhc-CCC
Confidence 59999999999999999999996666666553 355555555444 34444444433333332 223 445
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHhhhhcccc
Q 006920 308 VGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEP 387 (625)
Q Consensus 308 vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~y~~~fEp 387 (625)
.+|+.|+.+++.+|+.+|.-.. .+.||++..+.+.+++|...|. ..|.. .+ .++-+-...|+
T Consensus 69 ~~vi~CSALKr~YRD~LR~~~~---~~~Fv~L~g~~~~i~~Rm~~R~----gHFM~---~~--------ll~SQfa~LE~ 130 (161)
T COG3265 69 HVVIACSALKRSYRDLLREANP---GLRFVYLDGDFDLILERMKARK----GHFMP---AS--------LLDSQFATLEE 130 (161)
T ss_pred ceEEecHHHHHHHHHHHhccCC---CeEEEEecCCHHHHHHHHHhcc----cCCCC---HH--------HHHHHHHHhcC
Confidence 6788899999999999997532 2566666777666666655542 24432 22 33444444555
Q ss_pred CCCCCeeEEeec
Q 006920 388 VDEGSYIKMIDM 399 (625)
Q Consensus 388 ~~e~~~i~~id~ 399 (625)
+..++.++.||+
T Consensus 131 P~~de~vi~idi 142 (161)
T COG3265 131 PGADEDVLTIDI 142 (161)
T ss_pred CCCCCCEEEeeC
Confidence 555578888988
No 65
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.22 E-value=1.2e-10 Score=109.55 Aligned_cols=139 Identities=19% Similarity=0.299 Sum_probs=84.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEG 305 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~~ 305 (625)
|+|+|+|||||||+|+.|++.+++. +++.|.+.+...|.+.. .++...+...++..+. .+...+...
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~-----~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~e~-------~~~~~~~~~ 68 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLP-----FVDLDELIEQRAGMSIP-EIFAEEGEEGFRELER-------EVLLLLLTK 68 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC-----EEEchHHHHHHcCCCHH-HHHHHHCHHHHHHHHH-------HHHHHHhcc
Confidence 7899999999999999999999999 99999988877665432 3332223333222221 122223334
Q ss_pred CcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHhhhhc
Q 006920 306 GQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKV 384 (625)
Q Consensus 306 g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~y~~~ 384 (625)
+.. |+++.......... +.....+..++|| .|+.+.+++|...+ ..+|.++.. .++.+.+.|.+|.+.|.+.
T Consensus 69 ~~~-vi~~g~~~i~~~~~-~~~~~~~~~~i~l--~~~~e~~~~R~~~r--~~r~~~~~~-~~~~~~~~~~~r~~~Y~~~ 140 (154)
T cd00464 69 ENA-VIATGGGAVLREEN-RRLLLENGIVVWL--DASPEELLERLARD--KTRPLLQDE-DPERLRELLEEREPLYREV 140 (154)
T ss_pred CCc-EEECCCCccCcHHH-HHHHHcCCeEEEE--eCCHHHHHHHhccC--CCCCCCCCC-CHHHHHHHHHHHHHHHHHh
Confidence 555 44433322111111 2232224456666 56766666665443 257777766 5677888888888888765
No 66
>PRK13946 shikimate kinase; Provisional
Probab=99.20 E-value=1.7e-10 Score=112.93 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=85.8
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHH-HHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-NEVAALAMEDMIS 300 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~-~~va~~~l~~~~~ 300 (625)
.+..|+|+|+|||||||+|+.|++.|++. +++.|.+.+...|.+.. .++...++..++.. .+++..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~-----~id~D~~~~~~~g~~~~-e~~~~~ge~~~~~~e~~~l~~------- 75 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLP-----FLDADTEIERAARMTIA-EIFAAYGEPEFRDLERRVIAR------- 75 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCC-----eECcCHHHHHHhCCCHH-HHHHHHCHHHHHHHHHHHHHH-------
Confidence 45679999999999999999999999999 99999888777776554 23333344444322 222222
Q ss_pred HHHcCCcEEEEec--CCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCH-HHHHHHHHHH
Q 006920 301 WMHEGGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNR 377 (625)
Q Consensus 301 ~l~~~g~vvIvDa--tn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~-e~~~~~~~~r 377 (625)
+...+..||... ++..+..|+.++. .+ .+ |++.++.+.+.+|...+ ..+|..++. ++ +.+.+.+.+|
T Consensus 76 -l~~~~~~Vi~~ggg~~~~~~~r~~l~~---~~-~~--v~L~a~~e~~~~Rl~~r--~~rp~~~~~-~~~~~i~~~~~~R 145 (184)
T PRK13946 76 -LLKGGPLVLATGGGAFMNEETRAAIAE---KG-IS--VWLKADLDVLWERVSRR--DTRPLLRTA-DPKETLARLMEER 145 (184)
T ss_pred -HHhcCCeEEECCCCCcCCHHHHHHHHc---CC-EE--EEEECCHHHHHHHhcCC--CCCCcCCCC-ChHHHHHHHHHHH
Confidence 223455545542 4566666666653 23 23 45578887777776543 345655544 43 3345556666
Q ss_pred HHhhh
Q 006920 378 LANYE 382 (625)
Q Consensus 378 l~~y~ 382 (625)
.+.|.
T Consensus 146 ~~~y~ 150 (184)
T PRK13946 146 YPVYA 150 (184)
T ss_pred HHHHH
Confidence 66553
No 67
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.18 E-value=2.5e-10 Score=110.53 Aligned_cols=117 Identities=16% Similarity=0.177 Sum_probs=77.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
.++|.+|+++|+|||||||+|+.|++.|...+..+.+++.|.+|+.+.. . .+...... ..+.. ...+.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~-~---~~~~~~~~-------~~~~~-~~~l~ 71 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGH-Y---GYDKQSRI-------EMALK-RAKLA 71 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCC-C---CCCHHHHH-------HHHHH-HHHHH
Confidence 4567899999999999999999999999866666778999999885421 1 11111111 11111 11122
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHH
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNI 351 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i 351 (625)
..+...|.+||+|+++..+..++.++.+.. + .+.+++.|+.+++.+|..
T Consensus 72 ~~l~~~g~~VI~~~~~~~~~~~~~~~~~~~-~--~~~v~l~~~~e~~~~R~~ 120 (176)
T PRK05541 72 KFLADQGMIVIVTTISMFDEIYAYNRKHLP-N--YFEVYLKCDMEELIRRDQ 120 (176)
T ss_pred HHHHhCCCEEEEEeCCcHHHHHHHHHhhcC-C--eEEEEEeCCHHHHHHhch
Confidence 223346778899999987777777776632 2 245566789888887753
No 68
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.18 E-value=1.2e-10 Score=113.24 Aligned_cols=155 Identities=18% Similarity=0.290 Sum_probs=93.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech-HHHHHHcCCCCCC----cccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG-KYRRLKHGVNQSA----DFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D-~~Rk~~~g~~~~~----~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
+|+++|.|||||||+|+.|+++++.. +++.| .+|+......... .+..... ..-.++...++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~-----~is~~d~lr~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~ll~--- 68 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFT-----HLSAGDLLRAEIKSGSENGELIESMIKNGK----IVPSEVTVKLLK--- 68 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCe-----EEECChHHHHHHhcCChHHHHHHHHHHCCC----cCCHHHHHHHHH---
Confidence 58999999999999999999999988 99975 5666543111000 0000000 000112222222
Q ss_pred HHHHc-CCcEEEEecCCCcHHHHHHHHHHHc--CCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHH
Q 006920 300 SWMHE-GGQVGIFDATNSSRKRRNMLMKMAE--GNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 376 (625)
Q Consensus 300 ~~l~~-~g~vvIvDatn~~~~~R~~~~~l~~--~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~ 376 (625)
..+.. ++..+|+|+.+.+..++..+.++.. .... .++.+.|+.+.+++|...|... .+- .++-.+.+.+
T Consensus 69 ~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d-~~i~l~~~~~~~~~Rl~~R~~~--~~r-----~dd~~e~~~~ 140 (183)
T TIGR01359 69 NAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFK-FVLFFDCPEEVMIKRLLKRGQS--SGR-----VDDNIESIKK 140 (183)
T ss_pred HHHhccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCC-EEEEEECCHHHHHHHHhcCCcc--CCC-----CCCCHHHHHH
Confidence 22222 2556799999999988888887732 2233 3566788988888887765322 111 1123456777
Q ss_pred HHHhhhhccccCCC----CCeeEEeec
Q 006920 377 RLANYEKVYEPVDE----GSYIKMIDM 399 (625)
Q Consensus 377 rl~~y~~~fEp~~e----~~~i~~id~ 399 (625)
|+..|.+...|+-+ ...++.||.
T Consensus 141 r~~~y~~~~~~i~~~~~~~~~~~~Id~ 167 (183)
T TIGR01359 141 RFRTYNEQTLPVIEHYENKGKVKEINA 167 (183)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 88888776665432 245677886
No 69
>PRK14532 adenylate kinase; Provisional
Probab=99.18 E-value=5.6e-11 Score=116.22 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=91.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHHHHc-CCCCC---CcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKH-GVNQS---ADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk~~~-g~~~~---~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
-|+|+|.|||||||+|+.|++++++. +++.|+ +|+... |.... ..++...... ..++...++....
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~-----~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~ 72 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMV-----QLSTGDMLRAAIASGSELGQRVKGIMDRGELV----SDEIVIALIEERL 72 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe-----EEeCcHHHHHHHHcCCHHHHHHHHHHHCCCcc----CHHHHHHHHHHHH
Confidence 38899999999999999999999988 999965 454332 10000 0001110000 0122222222222
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeE-EEEEEecChHHHHHHHHHhhhc-cCCCCCCCCCHHHHHHHHHH
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQ-QSPDYAEEPDFEAGLQDFKN 376 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~v-vfle~~~~~e~i~~R~i~rr~~-~~pd~sd~~d~e~~~~~~~~ 376 (625)
.-+. .+..+|+|+...+..+++.+.++ ...+..+ ..|++.|+++.+++|...|... .+++ +-.+.+.+
T Consensus 73 ~~~~-~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~d--------d~~~~~~~ 143 (188)
T PRK14532 73 PEAE-AAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPD--------DNPEVFVT 143 (188)
T ss_pred hCcC-ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCC--------CCHHHHHH
Confidence 2222 34556999999999999998877 5555543 5666788988888887655321 2232 12245666
Q ss_pred HHHhhhhccccCC----CCCeeEEeec
Q 006920 377 RLANYEKVYEPVD----EGSYIKMIDM 399 (625)
Q Consensus 377 rl~~y~~~fEp~~----e~~~i~~id~ 399 (625)
|+..|.....|+- +...++.||.
T Consensus 144 Rl~~~~~~~~~i~~~y~~~~~~~~id~ 170 (188)
T PRK14532 144 RLDAYNAQTAPLLPYYAGQGKLTEVDG 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 7777765544431 2234555664
No 70
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.17 E-value=2.7e-10 Score=129.14 Aligned_cols=144 Identities=15% Similarity=0.188 Sum_probs=101.0
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHH-HHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVA-ALAMEDM 298 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va-~~~l~~~ 298 (625)
+.+...|+|+|+|||||||+++.||+.|++. ++|.|.+.+...|++..+ +|...+++.++..+.-+ +.++.
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~-----fiD~D~~ie~~~g~si~e-if~~~Ge~~FR~~E~~~l~~~~~-- 74 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLP-----FADADVEIEREIGMSIPS-YFEEYGEPAFREVEADVVADMLE-- 74 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHhCCC-----EEEchHHHHHHHCcCHHH-HHHHHHHHHHHHHHHHHHHHHHh--
Confidence 4455679999999999999999999999999 999999988888988774 55555677776665433 22222
Q ss_pred HHHHHcCCcEEEEecCC---CcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHH
Q 006920 299 ISWMHEGGQVGIFDATN---SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 375 (625)
Q Consensus 299 ~~~l~~~g~vvIvDatn---~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~ 375 (625)
.... |+.+.. ..++.|+.+.++.+.+..++|| .++.+++.+|.. + ...+|.+.+. ..+.+.+.|.
T Consensus 75 ------~~~~-VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L--~~~~~~l~~Rl~-~-~~~RPll~~~-~~~~~~~l~~ 142 (542)
T PRK14021 75 ------DFDG-IFSLGGGAPMTPSTQHALASYIAHGGRVVYL--DADPKEAMERAN-R-GGGRPMLNGD-ANKRWKKLFK 142 (542)
T ss_pred ------cCCe-EEECCCchhCCHHHHHHHHHHHhcCCEEEEE--ECCHHHHHHHHh-C-CCCCCCCCCC-cHHHHHHHHH
Confidence 2233 443322 2345666666553334466777 567777777753 3 2467887654 5677889999
Q ss_pred HHHHhhhh
Q 006920 376 NRLANYEK 383 (625)
Q Consensus 376 ~rl~~y~~ 383 (625)
+|.+.|++
T Consensus 143 ~R~~~Y~~ 150 (542)
T PRK14021 143 QRDPVFRQ 150 (542)
T ss_pred HHHHHHHh
Confidence 99999987
No 71
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.16 E-value=9.2e-10 Score=107.11 Aligned_cols=142 Identities=16% Similarity=0.186 Sum_probs=90.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH------HHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK------YRRLKHGVNQSADFFRADNPEGMEARNEVAALAME 296 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~------~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~ 296 (625)
+.+++++|.+||||||+++.|+..++.. ++++|. +|+...|..... .............+..
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~-----~i~gd~~~~~~~~r~~~~g~~~~~----~~~~~~~~~~~~~~~~--- 70 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAK-----FIDGDDLHPAKNIDKMSQGIPLTD----EDRLPWLERLNDASYS--- 70 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCE-----EECCcccCCHhHHHHHhcCCCCCc----ccchHHHHHHHHHHHH---
Confidence 3579999999999999999999998876 777776 555555544332 1111111111111111
Q ss_pred HHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHH
Q 006920 297 DMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 376 (625)
Q Consensus 297 ~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~ 376 (625)
.+..+...+|+ +++.++..|+.+++ .+.++.||+|.|+.+.+.+|..+|. . ++ + +++
T Consensus 71 ----~~~~~~~g~iv-~s~~~~~~R~~~r~---~~~~~~~v~l~a~~~~l~~Rl~~R~-~---~~--~-~~~-------- 127 (176)
T PRK09825 71 ----LYKKNETGFIV-CSSLKKQYRDILRK---SSPNVHFLWLDGDYETILARMQRRA-G---HF--M-PPD-------- 127 (176)
T ss_pred ----HHhcCCCEEEE-EEecCHHHHHHHHh---hCCCEEEEEEeCCHHHHHHHHhccc-C---CC--C-CHH--------
Confidence 12223344355 89999989887754 4667899999999888777765553 2 22 3 455
Q ss_pred HHHhhhhccccCCCC-CeeEEeec
Q 006920 377 RLANYEKVYEPVDEG-SYIKMIDM 399 (625)
Q Consensus 377 rl~~y~~~fEp~~e~-~~i~~id~ 399 (625)
.++.+...|||++.. ..+..+|+
T Consensus 128 vl~~Q~~~~e~~~~~e~~~~~~d~ 151 (176)
T PRK09825 128 LLQSQFDALERPCADEHDIARIDV 151 (176)
T ss_pred HHHHHHHHcCCCCCCcCCeEEEEC
Confidence 556667777877544 45777887
No 72
>PRK14531 adenylate kinase; Provisional
Probab=99.14 E-value=1.1e-10 Score=114.06 Aligned_cols=152 Identities=18% Similarity=0.205 Sum_probs=90.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech-HHHHHHcCCCCCCc----ccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG-KYRRLKHGVNQSAD----FFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D-~~Rk~~~g~~~~~~----f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
-|+++|.|||||||+|+.|+++++.. +++.+ .+|+...+...... +....... -.++...++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~-----~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v----~d~l~~~~~~--- 71 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLR-----HLSTGDLLRSEVAAGSALGQEAEAVMNRGELV----SDALVLAIVE--- 71 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC-----eEecccHHHHHHhcCCHHHHHHHHHHHcCCCC----CHHHHHHHHH---
Confidence 58999999999999999999999988 88884 56665533211000 00000000 0111111111
Q ss_pred HHHHc-CCcEEEEecCCCcHHHHHHHHHH-HcCCCeE-EEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHH
Q 006920 300 SWMHE-GGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 376 (625)
Q Consensus 300 ~~l~~-~g~vvIvDatn~~~~~R~~~~~l-~~~~~~v-vfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~ 376 (625)
..+.. .+..+|+|+.+.+..+++.+.++ .+.+..+ .++++.|+++.+++|...|. +++ |. .+.+.+
T Consensus 72 ~~l~~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~---r~d-----D~---~e~i~~ 140 (183)
T PRK14531 72 SQLKALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG---RAD-----DN---EAVIRN 140 (183)
T ss_pred HHHhhccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC---CCC-----CC---HHHHHH
Confidence 12221 23345889999999988888877 4445433 35667889877777766542 111 22 235667
Q ss_pred HHHhhhhccccCCCC----CeeEEeec
Q 006920 377 RLANYEKVYEPVDEG----SYIKMIDM 399 (625)
Q Consensus 377 rl~~y~~~fEp~~e~----~~i~~id~ 399 (625)
|++.|.+..+|+-+- ..++.||.
T Consensus 141 Rl~~y~~~~~pv~~~y~~~~~~~~id~ 167 (183)
T PRK14531 141 RLEVYREKTAPLIDHYRQRGLLQSVEA 167 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 888888877775321 33455664
No 73
>PLN02199 shikimate kinase
Probab=99.12 E-value=1.6e-09 Score=112.37 Aligned_cols=142 Identities=16% Similarity=0.178 Sum_probs=93.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHH-cCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK-HGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 301 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~-~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~ 301 (625)
..-|+|+|+|||||||+++.||+.|++. ++|.|.+.+.. .|.... .+|...++..++..+.-+..-+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~-----fIDtD~lIe~~~~G~sI~-eIf~~~GE~~FR~~E~e~L~~L------ 169 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYT-----FFDCDTLIEQAMNGTSVA-EIFVHHGENFFRGKETDALKKL------ 169 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEehHHHHHHHhcCCCHH-HHHHHhCHHHHHHHHHHHHHHH------
Confidence 3468999999999999999999999999 99999887765 565444 4556666776655543322211
Q ss_pred HHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCH-------HHHHHHH
Q 006920 302 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-------EAGLQDF 374 (625)
Q Consensus 302 l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~-------e~~~~~~ 374 (625)
...... || +|....-.+...+.+...| .++|| .++.+++.+|........+|...+. ++ +.+.+.|
T Consensus 170 -~~~~~~-VI-StGGG~V~~~~n~~~L~~G-~vV~L--das~E~l~~RL~~~~~~~RPLL~~~-~~d~~~~~~~~L~~L~ 242 (303)
T PLN02199 170 -SSRYQV-VV-STGGGAVIRPINWKYMHKG-ISIWL--DVPLEALAHRIAAVGTDSRPLLHDE-SGDAYSVAFKRLSAIW 242 (303)
T ss_pred -HhcCCE-EE-ECCCcccCCHHHHHHHhCC-eEEEE--ECCHHHHHHHHhhcCCCCCCcCCCC-CcchhhhHHHHHHHHH
Confidence 112334 55 4444444455555553344 46666 6788777777654223457877643 33 5677888
Q ss_pred HHHHHhhhh
Q 006920 375 KNRLANYEK 383 (625)
Q Consensus 375 ~~rl~~y~~ 383 (625)
.+|.+.|..
T Consensus 243 ~~R~plY~~ 251 (303)
T PLN02199 243 DERGEAYTN 251 (303)
T ss_pred HHHHHHHHh
Confidence 899998876
No 74
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.12 E-value=5.9e-10 Score=106.70 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=40.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCC
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS 272 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~ 272 (625)
.+.+|+|+|+|||||||+|+.|++.+++. +++.|.+.+...|.+..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~-----~~d~d~~~~~~~g~~~~ 48 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYD-----FIDTDHLIEARAGKSIP 48 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHcCCCHH
Confidence 46799999999999999999999999988 99999988877776543
No 75
>PRK14527 adenylate kinase; Provisional
Probab=99.12 E-value=3.6e-10 Score=111.08 Aligned_cols=161 Identities=15% Similarity=0.191 Sum_probs=96.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCCCcccCCCCHHHHHHHH---HHHHH-H
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN---EVAAL-A 294 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~~~f~~~~~~~~~~~~~---~va~~-~ 294 (625)
.++|.+|+++|.|||||||+|+.|+++++.. +++.|++ |+...+ .... +........ .+-.. +
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~-----~is~gd~~r~~~~~-~~~~------~~~~~~~~~~g~~~p~~~~ 70 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLK-----KLSTGDILRDHVAR-GTEL------GQRAKPIMEAGDLVPDELI 70 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCCC-----CCCccHHHHHHHhc-CcHH------HHHHHHHHHcCCCCcHHHH
Confidence 4568899999999999999999999999988 7887665 443321 1000 000000000 00001 1
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCcHHHHHHHHHH-HcCCCeE-EEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHH
Q 006920 295 MEDMISWMHE-GGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGL 371 (625)
Q Consensus 295 l~~~~~~l~~-~g~vvIvDatn~~~~~R~~~~~l-~~~~~~v-vfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~ 371 (625)
...+...+.. .+..+|+|+...+..+++.+..+ ...+..+ .++++.|+++.+++|...|... ..-. ++-.
T Consensus 71 ~~l~~~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~--~~r~-----dd~~ 143 (191)
T PRK14527 71 LALIRDELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQ--EGRS-----DDNE 143 (191)
T ss_pred HHHHHHHHhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCccc--CCCC-----CCCH
Confidence 1112223332 23457999877678888888877 5556554 3466789998888888776422 1111 1124
Q ss_pred HHHHHHHHhhhhccccCC----CCCeeEEeec
Q 006920 372 QDFKNRLANYEKVYEPVD----EGSYIKMIDM 399 (625)
Q Consensus 372 ~~~~~rl~~y~~~fEp~~----e~~~i~~id~ 399 (625)
+.+.+|++.|....+|+- +...++.||.
T Consensus 144 ~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~ 175 (191)
T PRK14527 144 ETVRRRQQVYREQTQPLVDYYEARGHLKRVDG 175 (191)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhcCCEEEEEC
Confidence 567778888888777653 2245667775
No 76
>PRK13947 shikimate kinase; Provisional
Probab=99.10 E-value=1e-09 Score=105.39 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=79.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHH-HHHHHHHHHHHHHHc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNE-VAALAMEDMISWMHE 304 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~-va~~~l~~~~~~l~~ 304 (625)
|+++|+|||||||+|+.||+.|++. +++.|.+.+...|.+..+ ++...++..++..+. +... +..
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~-----~id~d~~~~~~~g~~~~~-~~~~~ge~~~~~~e~~~~~~--------l~~ 69 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFG-----FIDTDKEIEKMTGMTVAE-IFEKDGEVRFRSEEKLLVKK--------LAR 69 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC-----EEECchhhhhhcCCcHHH-HHHHhChHHHHHHHHHHHHH--------Hhh
Confidence 8999999999999999999999999 999999888777765543 333334444443333 2222 222
Q ss_pred CCcEEEEecCC---CcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 006920 305 GGQVGIFDATN---SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 381 (625)
Q Consensus 305 ~g~vvIvDatn---~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~y 381 (625)
.+.. |+.+.. ..... +..+.+.+ .++|| .++.+.+.+|...+ ..+|...+....+.+.+.+.+|.+.|
T Consensus 70 ~~~~-vi~~g~g~vl~~~~---~~~l~~~~-~vv~L--~~~~~~l~~Rl~~r--~~rp~~~~~~~~~~i~~~~~~r~~~y 140 (171)
T PRK13947 70 LKNL-VIATGGGVVLNPEN---VVQLRKNG-VVICL--KARPEVILRRVGKK--KSRPLLMVGDPEERIKELLKEREPFY 140 (171)
T ss_pred cCCe-EEECCCCCcCCHHH---HHHHHhCC-EEEEE--ECCHHHHHHHhcCC--CCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 3344 333322 22323 23334444 35555 66766666665433 33565543313455666777777666
Q ss_pred h
Q 006920 382 E 382 (625)
Q Consensus 382 ~ 382 (625)
.
T Consensus 141 ~ 141 (171)
T PRK13947 141 D 141 (171)
T ss_pred H
Confidence 4
No 77
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.10 E-value=1.1e-09 Score=105.98 Aligned_cols=140 Identities=17% Similarity=0.214 Sum_probs=86.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 302 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l 302 (625)
+..|+++|++||||||+|+.|++.+++. +++.|..++...|.+.. .++...+...++..+ ..++. .+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~-----~vd~D~~i~~~~g~~i~-~~~~~~g~~~fr~~e---~~~l~----~l 70 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNME-----FYDSDQEIEKRTGADIG-WVFDVEGEEGFRDRE---EKVIN----EL 70 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCc-----EEECCchHHHHhCcCHh-HHHHHhCHHHHHHHH---HHHHH----HH
Confidence 4569999999999999999999999988 99999888877776544 233444455554432 12222 22
Q ss_pred HcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCH-HHHHHHHHHHHHh
Q 006920 303 HEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRLAN 380 (625)
Q Consensus 303 ~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~-e~~~~~~~~rl~~ 380 (625)
...+.+ |+.+.... -.+...+.+ .+.+ .++|| .++.+.+++|...+ ..+|.+.+. .+ +.+.+.+.+|.+.
T Consensus 71 ~~~~~~-vi~~ggg~-v~~~~~~~~l~~~~-~vv~L--~~~~e~~~~Ri~~~--~~rP~~~~~-~~~~~~~~l~~~R~~~ 142 (172)
T PRK05057 71 TEKQGI-VLATGGGS-VKSRETRNRLSARG-VVVYL--ETTIEKQLARTQRD--KKRPLLQVD-DPREVLEALANERNPL 142 (172)
T ss_pred HhCCCE-EEEcCCch-hCCHHHHHHHHhCC-EEEEE--eCCHHHHHHHHhCC--CCCCCCCCC-CHHHHHHHHHHHHHHH
Confidence 223444 44333222 112222233 3333 46666 67888888887533 457888765 44 4456677778777
Q ss_pred hhh
Q 006920 381 YEK 383 (625)
Q Consensus 381 y~~ 383 (625)
|.+
T Consensus 143 Y~~ 145 (172)
T PRK05057 143 YEE 145 (172)
T ss_pred HHh
Confidence 755
No 78
>PRK13949 shikimate kinase; Provisional
Probab=99.10 E-value=8.3e-10 Score=106.70 Aligned_cols=139 Identities=18% Similarity=0.191 Sum_probs=80.2
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEG 305 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~~ 305 (625)
|+++|+|||||||+|+.|++.+++. +++.|.+.+...|.+.. .++...+++.++..+.-+ +. -+...
T Consensus 4 I~liG~~GsGKstl~~~La~~l~~~-----~id~D~~i~~~~~~~~~-~~~~~~g~~~fr~~e~~~---l~----~l~~~ 70 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGLS-----FIDLDFFIENRFHKTVG-DIFAERGEAVFRELERNM---LH----EVAEF 70 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC-----eecccHHHHHHHCccHH-HHHHHhCHHHHHHHHHHH---HH----HHHhC
Confidence 8999999999999999999999998 89999877666665433 233333444444333222 11 12223
Q ss_pred CcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHH----HHHHHHHHHHhh
Q 006920 306 GQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEA----GLQDFKNRLANY 381 (625)
Q Consensus 306 g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~----~~~~~~~rl~~y 381 (625)
... |+...+......+....+.+.+ .++|| .++.+.+++|. +.....+|...+. ..++ +.+.|.+|.+.|
T Consensus 71 ~~~-vis~Ggg~~~~~~~~~~l~~~~-~vi~L--~~~~~~~~~Ri-~~~~~~RP~~~~~-~~~~~~~~i~~l~~~R~~~Y 144 (169)
T PRK13949 71 EDV-VISTGGGAPCFFDNMELMNASG-TTVYL--KVSPEVLFVRL-RLAKQQRPLLKGK-SDEELLDFIIEALEKRAPFY 144 (169)
T ss_pred CCE-EEEcCCcccCCHHHHHHHHhCC-eEEEE--ECCHHHHHHHH-hcCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH
Confidence 344 4433333222222222233444 35566 56766666655 4333467887655 4343 445666677766
Q ss_pred hh
Q 006920 382 EK 383 (625)
Q Consensus 382 ~~ 383 (625)
..
T Consensus 145 ~~ 146 (169)
T PRK13949 145 RQ 146 (169)
T ss_pred Hh
Confidence 54
No 79
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.06 E-value=9e-09 Score=101.94 Aligned_cols=125 Identities=12% Similarity=0.117 Sum_probs=74.6
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCC-----c------ccCCCCHH----HHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-----D------FFRADNPE----GMEA 286 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~-----~------f~~~~~~~----~~~~ 286 (625)
.+.+|+++|+||+||||+|+.|++.++.. .++.+|.+|+.+.+..... . .++....+ ++..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~----~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~ 77 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAID----IVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLD 77 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCe----EEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHH
Confidence 47899999999999999999999998753 2678888888776543321 0 11211111 1111
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhh
Q 006920 287 RNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 355 (625)
Q Consensus 287 ~~~va~~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~ 355 (625)
........+..+...+...|..+|+|+++..+..++..+ ..++.+++ +.+++++.+++|+..|.
T Consensus 78 q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~---~~~v~~i~--l~v~d~e~lr~Rl~~R~ 141 (197)
T PRK12339 78 QARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENR---TNNIRAFY--LYIRDAELHRSRLADRI 141 (197)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHH---hcCeEEEE--EEeCCHHHHHHHHHHHh
Confidence 111112223333333334667779999999998875433 22333333 34556666656555554
No 80
>PLN02200 adenylate kinase family protein
Probab=99.04 E-value=6.1e-10 Score=113.21 Aligned_cols=155 Identities=15% Similarity=0.249 Sum_probs=93.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHHHHcCCCCCCcccCCCCHHHHHHH-------HHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEAR-------NEVA 291 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk~~~g~~~~~~f~~~~~~~~~~~~-------~~va 291 (625)
...|.+|+++|.|||||||+|+.|+++++.. +++.++ +|+...+.... +....... ..+.
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~-----his~gdllR~~i~~~s~~-------~~~i~~~~~~G~~vp~e~~ 107 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFK-----HLSAGDLLRREIASNSEH-------GAMILNTIKEGKIVPSEVT 107 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCe-----EEEccHHHHHHHhccChh-------HHHHHHHHHcCCCCcHHHH
Confidence 5678999999999999999999999999987 898865 56544331110 00000000 0111
Q ss_pred HHHHHHHHHHHH-cCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHH
Q 006920 292 ALAMEDMISWMH-EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG 370 (625)
Q Consensus 292 ~~~l~~~~~~l~-~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~ 370 (625)
..++. ..+. ..+..+|+|+......++..+..+..... -.++.+.|+++.+++|...|+. .+. ++.
T Consensus 108 ~~~l~---~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~p-d~vi~Ld~~~e~~~~Rl~~R~~-~r~--------dd~ 174 (234)
T PLN02200 108 VKLIQ---KEMESSDNNKFLIDGFPRTEENRIAFERIIGAEP-NVVLFFDCPEEEMVKRVLNRNQ-GRV--------DDN 174 (234)
T ss_pred HHHHH---HHHhcCCCCeEEecCCcccHHHHHHHHHHhccCC-CEEEEEECCHHHHHHHHHcCcC-CCC--------CCC
Confidence 11111 1122 12345799998888878877776632222 2345568898888888766532 122 122
Q ss_pred HHHHHHHHHhhhhccccCCC----CCeeEEeec
Q 006920 371 LQDFKNRLANYEKVYEPVDE----GSYIKMIDM 399 (625)
Q Consensus 371 ~~~~~~rl~~y~~~fEp~~e----~~~i~~id~ 399 (625)
.+.+.+|++.|....+|+-+ ...++.||.
T Consensus 175 ~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa 207 (234)
T PLN02200 175 IDTIKKRLKVFNALNLPVIDYYSKKGKLYTINA 207 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 45677788888887666432 245667776
No 81
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.03 E-value=2.2e-09 Score=103.25 Aligned_cols=137 Identities=16% Similarity=0.247 Sum_probs=82.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 304 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~ 304 (625)
.|+++|+|||||||+|+.|++.+++. +++.|.+.+...|....+ ++...+.+.++..+.-+ + ..+.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~-----~~d~D~~~~~~~g~~~~~-~~~~~g~~~~~~~e~~~---~----~~~~- 69 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYR-----FVDTDQWLQSTSNMTVAE-IVEREGWAGFRARESAA---L----EAVT- 69 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC-----EEEccHHHHHHhCCCHHH-HHHHHCHHHHHHHHHHH---H----HHhc-
Confidence 48889999999999999999999999 999999988877766543 33333344443333221 1 1222
Q ss_pred CCcEEEEecCCC---cHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhh-ccCCCCCCCCCH-HHHHHHHHHHHH
Q 006920 305 GGQVGIFDATNS---SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI-QQSPDYAEEPDF-EAGLQDFKNRLA 379 (625)
Q Consensus 305 ~g~vvIvDatn~---~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~-~~~pd~sd~~d~-e~~~~~~~~rl~ 379 (625)
.+.. |+.+... ....|..+ .+.+ .++|| .++.+.+.+|...+.. ..+|...+. +. ++..+.+.+|.+
T Consensus 70 ~~~~-vi~~ggg~vl~~~~~~~l---~~~~-~~v~l--~~~~~~~~~Rl~~r~~~~~rp~~~~~-~~~~~~~~~~~~r~~ 141 (171)
T PRK03731 70 APST-VIATGGGIILTEENRHFM---RNNG-IVIYL--CAPVSVLANRLEANPEEDQRPTLTGK-PISEEVAEVLAEREA 141 (171)
T ss_pred CCCe-EEECCCCccCCHHHHHHH---HhCC-EEEEE--ECCHHHHHHHHccccccccCCcCCCC-ChHHHHHHHHHHHHH
Confidence 2333 4544322 23333333 3333 34555 6687777777654321 235555444 33 556677777878
Q ss_pred hhhh
Q 006920 380 NYEK 383 (625)
Q Consensus 380 ~y~~ 383 (625)
.|..
T Consensus 142 ~y~~ 145 (171)
T PRK03731 142 LYRE 145 (171)
T ss_pred HHHH
Confidence 7765
No 82
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=99.03 E-value=1.6e-08 Score=110.71 Aligned_cols=140 Identities=11% Similarity=0.144 Sum_probs=95.1
Q ss_pred HHHHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcc------------
Q 006920 208 AAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADF------------ 275 (625)
Q Consensus 208 ~~~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f------------ 275 (625)
++.+++.+. ...+|.+|+++|.||+||||+|.+||.++++. .++++|.+|+.+.+.-..+..
T Consensus 242 ~y~la~~i~--~~k~p~vil~~G~~G~GKSt~a~~LA~~lg~~----~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~ 315 (475)
T PRK12337 242 RYRLLRSIR--RPPRPLHVLIGGVSGVGKSVLASALAYRLGIT----RIVSTDAVREVLRAMVSKDLLPTLHASTFNAWR 315 (475)
T ss_pred HHHHHHHhh--ccCCCeEEEEECCCCCCHHHHHHHHHHHcCCc----EEeehhHHHHHHHhhcchhhccchhhchhhHHh
Confidence 446666665 34579999999999999999999999999875 277999999977764322110
Q ss_pred -c-CC--------CC---HHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecC
Q 006920 276 -F-RA--------DN---PEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICN 342 (625)
Q Consensus 276 -~-~~--------~~---~~~~~~~~~va~~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~ 342 (625)
. .. .. -.+|+.........++.++......|..+|+|++++.+..++. ....+..++.+.|.|+
T Consensus 316 ~~~~~~~~~~~~~~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~---~~~~~~~~i~flv~is 392 (475)
T PRK12337 316 ALLPPGEGLPAEPTRAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRH---PYQAGALVVPMLVTLP 392 (475)
T ss_pred hccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHH---HHhcCCceEEEEEEEC
Confidence 0 00 11 1222323333333344444443345677799999999987652 2345667888889999
Q ss_pred hHHHHHHHHHhhhc
Q 006920 343 DRDIIERNIRLKIQ 356 (625)
Q Consensus 343 ~e~i~~R~i~rr~~ 356 (625)
+++.+++|...|..
T Consensus 393 deeeH~~Rf~~Ra~ 406 (475)
T PRK12337 393 DEALHRRRFELRDR 406 (475)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999998887755
No 83
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=99.02 E-value=4.1e-10 Score=116.69 Aligned_cols=121 Identities=24% Similarity=0.248 Sum_probs=105.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
.-+..-||++||+|+||||++-+|.++|...|+.++-+|.|.+| +|+....+|.++++++.+++..++++...+
T Consensus 47 gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnir---hgl~knlgfs~edreenirriaevaklfad--- 120 (627)
T KOG4238|consen 47 GFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIR---HGLNKNLGFSPEDREENIRRIAEVAKLFAD--- 120 (627)
T ss_pred CccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhh---hhhhhccCCCchhHHHHHHHHHHHHHHHhc---
Confidence 45678899999999999999999999999999999999999986 577888899999999999999999998766
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHH
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 351 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i 351 (625)
.|.+.|-....+..++|..++++ ...+.+++-+.+.++.+.+.+|-.
T Consensus 121 -----aglvcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~ 168 (627)
T KOG4238|consen 121 -----AGLVCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDV 168 (627)
T ss_pred -----CCceeeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcCh
Confidence 88887888888889999999999 777888877777777777766644
No 84
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.00 E-value=4.8e-09 Score=101.70 Aligned_cols=123 Identities=22% Similarity=0.301 Sum_probs=72.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHc--ccCCcceEEechHHHHHHcC-CC-CCCcc-cCCCCHHHHHHHHHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRRLKHG-VN-QSADF-FRADNPEGMEARNEVAALAMEDM 298 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~--~~g~~~~~~~~D~~Rk~~~g-~~-~~~~f-~~~~~~~~~~~~~~va~~~l~~~ 298 (625)
.||+|.|-|.|||||+|+.|++.+. |. +|..|.+++.+.. .. ...++ +..+.+..-.....++. .....
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~-----~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~ 75 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWL-----HLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYA-AMHAA 75 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EE-----EEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHH-HHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeE-----EEecChHHhhcCcccccCCccccccccCCchhHHHHHHHH-HHHHH
Confidence 5899999999999999999999986 56 8999999884321 11 11122 11111111111112222 12223
Q ss_pred HHHHHcCCcEEEEecCCCcHH-HHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 299 ISWMHEGGQVGIFDATNSSRK-RRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 299 ~~~l~~~g~vvIvDatn~~~~-~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
...+.+.|..||+|....... ..+.++++.+ ++++.||.+.||.+.+.+|...|
T Consensus 76 iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~-~~~vl~VgV~Cpleil~~RE~~R 130 (174)
T PF07931_consen 76 IAAMARAGNNVIVDDVFLGPRWLQDCLRRLLA-GLPVLFVGVRCPLEILERRERAR 130 (174)
T ss_dssp HHHHHHTT-EEEEEE--TTTHHHHHHHHHHHT-TS-EEEEEEE--HHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEecCccCcHHHHHHHHHHhC-CCceEEEEEECCHHHHHHHHHhc
Confidence 334556788889998888766 4778867643 78899999999988666665555
No 85
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=98.98 E-value=2.9e-09 Score=104.79 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=93.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCc-ceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH-HHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHD-TKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI-SWM 302 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~-~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~-~~l 302 (625)
+|++||+|.|||||.|+.|.+.|...|.+ ...+..|+ ..|+.....+.+..++ +.++-.+.-.. ..|
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~de----slg~~~ns~y~~s~~E-------K~lRg~L~S~v~R~L 71 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDE----SLGIEKNSNYGDSQAE-------KALRGKLRSAVDRSL 71 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechh----hcCCCCcccccccHHH-------HHHHHHHHHHHHhhc
Confidence 79999999999999999999999887755 44454432 2565554444333322 22222222111 223
Q ss_pred HcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 006920 303 HEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 381 (625)
Q Consensus 303 ~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~y 381 (625)
+ .+.+||+|+-|..+..|-++..+ +..+.....|+|.||.+.+.+.|-.+ ..|+..+. +++ .++..
T Consensus 72 s-k~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~---~~p~e~gy-~~e--------~le~L 138 (281)
T KOG3062|consen 72 S-KGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSER---EDPGEDGY-DDE--------LLEAL 138 (281)
T ss_pred c-cCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccC---CCCCCCCC-CHH--------HHHHH
Confidence 3 46788999999999999999888 55667778889999999999998443 34555555 444 44444
Q ss_pred hhccccCCC
Q 006920 382 EKVYEPVDE 390 (625)
Q Consensus 382 ~~~fEp~~e 390 (625)
...||.++.
T Consensus 139 ~~RyEeP~s 147 (281)
T KOG3062|consen 139 VQRYEEPNS 147 (281)
T ss_pred HHHhhCCCc
Confidence 445555543
No 86
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.95 E-value=6.5e-09 Score=110.02 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=87.5
Q ss_pred CCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHH
Q 006920 218 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 297 (625)
Q Consensus 218 ~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~ 297 (625)
++..++..|+++|+|||||||+|+.|++.|++. +++.|.+++...|.+..+. +...+...++..+. .++.
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~-----~id~D~~i~~~~G~~i~ei-~~~~G~~~fr~~e~---~~l~- 197 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVP-----FVELNREIEREAGLSVSEI-FALYGQEGYRRLER---RALE- 197 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCC-----EEeHHHHHHHHhCCCHHHH-HHHHCHHHHHHHHH---HHHH-
Confidence 456778899999999999999999999999999 8899988888888765432 22223444432221 1111
Q ss_pred HHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHH
Q 006920 298 MISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 377 (625)
Q Consensus 298 ~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~r 377 (625)
..+...+.+ |+.+.......-..+..+.. ++.++|| .|+.+.+++|..++ ...+|...+....+.+.+.+.+|
T Consensus 198 --~ll~~~~~~-VI~~Ggg~v~~~~~~~~l~~-~~~~V~L--~a~~e~~~~Rl~~r-~~~rp~~~~~~~~e~i~~~~~~R 270 (309)
T PRK08154 198 --RLIAEHEEM-VLATGGGIVSEPATFDLLLS-HCYTVWL--KASPEEHMARVRAQ-GDLRPMADNREAMEDLRRILASR 270 (309)
T ss_pred --HHHhhCCCE-EEECCCchhCCHHHHHHHHh-CCEEEEE--ECCHHHHHHHHhcC-CCCCCCCCCCChHHHHHHHHHHH
Confidence 122223445 44443332221122222333 3334444 67877777776543 23345333221456677777778
Q ss_pred HHhhh
Q 006920 378 LANYE 382 (625)
Q Consensus 378 l~~y~ 382 (625)
.+.|+
T Consensus 271 ~~~y~ 275 (309)
T PRK08154 271 EPLYA 275 (309)
T ss_pred HHHHH
Confidence 77775
No 87
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.95 E-value=7.7e-09 Score=102.38 Aligned_cols=133 Identities=19% Similarity=0.251 Sum_probs=81.8
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM 298 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~ 298 (625)
....|.+|++.|-|||||||++..+...+. +....+++.|.+|+... ....................+..+.+.+
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p---~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHP---DYDELLKADPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGST---THHHHHHHHCCCTHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhcc---chhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 357899999999999999999999998874 44556899999986431 0000000011122344455566666666
Q ss_pred HHHHHcCCcEEEEecCCCcHHHHH-HHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhc
Q 006920 299 ISWMHEGGQVGIFDATNSSRKRRN-MLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 356 (625)
Q Consensus 299 ~~~l~~~g~vvIvDatn~~~~~R~-~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~ 356 (625)
+..+.+.+..+|+|.|+.....-. .+..+.+.|+.+.++.+.|+.+..+.|...|-..
T Consensus 86 ~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~ 144 (199)
T PF06414_consen 86 IEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEE 144 (199)
T ss_dssp HHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHc
Confidence 666666777889999999866444 5666688899998888889988888887776544
No 88
>PRK01184 hypothetical protein; Provisional
Probab=98.95 E-value=1.2e-08 Score=99.30 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=70.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEec-hHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHH-HHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAM-EDMISW 301 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~-D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l-~~~~~~ 301 (625)
++|+|+|.|||||||+|+ +++.+++. +++. |.+|+...+..... .....+....+.+........ ..+...
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~-----~i~~~d~lr~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIP-----VVVMGDVIREEVKKRGLEP-TDENIGKVAIDLRKELGMDAVAKRTVPK 74 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCc-----EEEhhHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 489999999999999997 77888887 8886 55777653211111 111111212222222111111 111222
Q ss_pred HH-cCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 302 MH-EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 302 l~-~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
+. .++.++|+|+. .....++.+++... ..+..|.+.|+.+..++|...|
T Consensus 75 i~~~~~~~vvidg~-r~~~e~~~~~~~~~--~~~~~i~v~~~~~~~~~Rl~~R 124 (184)
T PRK01184 75 IREKGDEVVVIDGV-RGDAEVEYFRKEFP--EDFILIAIHAPPEVRFERLKKR 124 (184)
T ss_pred HHhcCCCcEEEeCC-CCHHHHHHHHHhCC--cccEEEEEECCHHHHHHHHHHc
Confidence 32 35678899998 46666667766533 2344566688998888887764
No 89
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.93 E-value=1.5e-08 Score=99.09 Aligned_cols=161 Identities=20% Similarity=0.223 Sum_probs=93.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCCCcccCCCCHHHHHHHH---HHH-HHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN---EVA-ALAMEDMIS 300 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~~~f~~~~~~~~~~~~~---~va-~~~l~~~~~ 300 (625)
|+++|.|||||||+|+.|++.+++. +++.|++ |+........ ......... .+- ..+...+..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~-----~i~~~~l~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~l~~~ 69 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLP-----HISTGDLLREEIASGTEL-------GKKAKEYIDSGKLVPDEIVIKLLKE 69 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe-----EEECcHHHHHHHhcCChH-------HHHHHHHHHcCCccCHHHHHHHHHH
Confidence 7999999999999999999999888 8998765 4433221100 000000000 000 011111222
Q ss_pred HHHc--CCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhhhcc--CCCCC-----------CC
Q 006920 301 WMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQ--SPDYA-----------EE 364 (625)
Q Consensus 301 ~l~~--~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr~~~--~pd~s-----------d~ 364 (625)
.+.. .+..+|+|+......+.+.+.+. .......++|.+.|+++.+++|...|.... ...|. ..
T Consensus 70 ~l~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~ 149 (194)
T cd01428 70 RLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQ 149 (194)
T ss_pred HHhcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCcccc
Confidence 3332 23446999977777777777776 333345556677899988888887764220 00000 00
Q ss_pred CCHHHHHHHHHHHHHhhhhccccCCCC----CeeEEeec
Q 006920 365 PDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 399 (625)
Q Consensus 365 ~d~e~~~~~~~~rl~~y~~~fEp~~e~----~~i~~id~ 399 (625)
..++..+.+.+|+..|....+|+.+- ...+.||.
T Consensus 150 -r~dd~~~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~ 187 (194)
T cd01428 150 -RSDDNEETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDG 187 (194)
T ss_pred -CCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEEC
Confidence 12233467888999998877776432 45556675
No 90
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.92 E-value=2.5e-09 Score=107.12 Aligned_cols=161 Identities=19% Similarity=0.234 Sum_probs=93.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHHHHcCCCCCC----cccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSA----DFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk~~~g~~~~~----~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
-|+++|.|||||||+|+.||+++++. +++.++ +|+...+..... .+....... -..+...+ +.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~-----~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~----p~~~~~~~---i~ 69 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIP-----HISTGDMLRAAVKAGTELGKEAKSYMDAGELV----PDEIVIGL---VK 69 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEECCccHHHHHhccchHHHHHHHHHHcCCcC----CHHHHHHH---HH
Confidence 48999999999999999999999998 898865 555443211100 000000000 00111111 11
Q ss_pred HHHHc--CCcEEEEecCCCcHHHHHHHHHH-HcCCCeE-EEEEEecChHHHHHHHHHhhhcc-----------CCC----
Q 006920 300 SWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQ-----------SPD---- 360 (625)
Q Consensus 300 ~~l~~--~g~vvIvDatn~~~~~R~~~~~l-~~~~~~v-vfle~~~~~e~i~~R~i~rr~~~-----------~pd---- 360 (625)
..+.. .+..+|+|+...+..+.+.+.+. ...+..+ .+|.+.|+++.+++|...|+... .|.
T Consensus 70 ~~l~~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~ 149 (215)
T PRK00279 70 ERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGK 149 (215)
T ss_pred HHHhccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCc
Confidence 22222 23356999977777777777665 4555443 56777899988888877664210 000
Q ss_pred -------CCCCCCHHHHHHHHHHHHHhhhhccccCCCC----CeeEEeec
Q 006920 361 -------YAEEPDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 399 (625)
Q Consensus 361 -------~sd~~d~e~~~~~~~~rl~~y~~~fEp~~e~----~~i~~id~ 399 (625)
... ..++..+.+.+|+..|....+|+-.- ...+.||.
T Consensus 150 ~~~~~~~l~~--r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~ 197 (215)
T PRK00279 150 CDVCGEELIQ--RADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDG 197 (215)
T ss_pred CcCCCCcccC--CCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEEC
Confidence 000 12334567888999998877776432 33556665
No 91
>PRK12338 hypothetical protein; Provisional
Probab=98.88 E-value=3.7e-08 Score=103.78 Aligned_cols=214 Identities=16% Similarity=0.171 Sum_probs=112.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEE-echHHHHHHcCCCCCCc----ccC---C------C----C-H
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF-NVGKYRRLKHGVNQSAD----FFR---A------D----N-P 281 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~-~~D~~Rk~~~g~~~~~~----f~~---~------~----~-~ 281 (625)
.+|.+|+++|.|||||||+|+.||+++++. ++ ++|.+|+.+.|....+. ... . . . .
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~-----~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~ 76 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIK-----HLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNE 76 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCe-----EEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchH
Confidence 468999999999999999999999999876 55 88899998887533311 000 0 0 0 0
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhcc
Q 006920 282 ----EGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ 357 (625)
Q Consensus 282 ----~~~~~~~~va~~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~ 357 (625)
.+++....+....++.++.....+|..+|+++....+......+. .....+.|+.+. ++++...+|...|...
T Consensus 77 ~~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~--~~~~~v~~~vl~-~dee~h~~Rf~~R~~~ 153 (319)
T PRK12338 77 ELICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQF--EENASIHFFILS-ADEEVHKERFVKRAME 153 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhh--cccCceEEEEEE-CCHHHHHHHHHHhhhc
Confidence 123333333444444444443457778899999998876664322 122345555555 5555555555544321
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhhccccCCCCCeeEEeeccCCCCccceecccccCcCCceeeeeeccCCC----Ccc
Q 006920 358 SPDYAEEPDFEAGLQDFKNRLANYEKVYEPVDEGSYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLT----PRP 433 (625)
Q Consensus 358 ~pd~sd~~d~e~~~~~~~~rl~~y~~~fEp~~e~~~i~~id~~~~~g~~~~~~~~~g~L~~~~~~~l~n~~~~----~~~ 433 (625)
.. .....++.|......+ ..+.-......+.+|+- ..-.-.++.+..++.....-+..+.... -..
T Consensus 154 ~~------r~~~~l~~f~~Ir~Iq-~~l~~~A~e~~VpvI~N---~did~Tv~~ile~I~e~s~~i~~~H~~~~~~~El~ 223 (319)
T PRK12338 154 IK------RGGKQLEYFRENRIIH-DHLVEQAREHNVPVIKN---DDIDCTVKKMLSYIREVCVTVTLQHSVDDLDEVIE 223 (319)
T ss_pred cC------CchhhhhChHHHHHHH-HHHHHhHhhCCCceeCC---CcHHHHHHHHHHHHHhheEEEEEeCCHHHHHHHHH
Confidence 11 1112333333222221 11211122222222221 1112223344455554433333333221 255
Q ss_pred EEEeccccccCCCCCCcCC
Q 006920 434 ILLTRHGESRDNVRGRIGG 452 (625)
Q Consensus 434 I~LVRHGes~~n~~~~~~g 452 (625)
+++|.||=..-+..+.++|
T Consensus 224 ~I~vd~Gg~v~dV~h~iyG 242 (319)
T PRK12338 224 IIIKRHGGRITDISYPIPG 242 (319)
T ss_pred eEEecCCCEEEEecccCCC
Confidence 6678999877666666666
No 92
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.88 E-value=3.4e-09 Score=101.14 Aligned_cols=130 Identities=17% Similarity=0.187 Sum_probs=79.2
Q ss_pred CCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Q 006920 232 PARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIF 311 (625)
Q Consensus 232 PGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~~g~vvIv 311 (625)
|||||||+|+.||+.|++. ++|.|.+.+...|.+..+.| ...+++.++..+.-+ +.-+...... ||
T Consensus 1 ~GsGKStvg~~lA~~L~~~-----fiD~D~~i~~~~g~si~~i~-~~~G~~~fr~~E~~~-------l~~l~~~~~~-VI 66 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRP-----FIDLDDEIEERTGMSISEIF-AEEGEEAFRELESEA-------LRELLKENNC-VI 66 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSE-----EEEHHHHHHHHHTSHHHHHH-HHHHHHHHHHHHHHH-------HHHHHCSSSE-EE
T ss_pred CCCcHHHHHHHHHHHhCCC-----ccccCHHHHHHhCCcHHHHH-HcCChHHHHHHHHHH-------HHHHhccCcE-EE
Confidence 7999999999999999999 99999988888886655333 333344443333222 1112223233 55
Q ss_pred ec---CCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCH-HHHHHHHHHHHHhhhhc
Q 006920 312 DA---TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRLANYEKV 384 (625)
Q Consensus 312 Da---tn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~-e~~~~~~~~rl~~y~~~ 384 (625)
.+ +....+.|+.++ .+..++|| .++.+.+.+|...+. .+|.+.+. .. +...+.+.+|.+.|...
T Consensus 67 a~GGG~~~~~~~~~~L~----~~g~vI~L--~~~~~~l~~Rl~~~~--~Rp~l~~~-~~~~~~~~~~~~R~~~Y~~~ 134 (158)
T PF01202_consen 67 ACGGGIVLKEENRELLK----ENGLVIYL--DADPEELAERLRARD--NRPLLKGK-MEHEEILELLFEREPLYEQA 134 (158)
T ss_dssp EE-TTGGGSHHHHHHHH----HHSEEEEE--E--HHHHHHHHHHHC--TSGGTCSH-HHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCcCcHHHHHHHH----hCCEEEEE--eCCHHHHHHHHhCCC--CCCCCCCC-ChHHHHHHHHHHHHHHHHhc
Confidence 44 333345555544 34457777 557777777765442 36877655 32 34666667888888763
No 93
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.83 E-value=9.6e-09 Score=102.52 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=90.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHHHHcCCCCCCcccCCCCHHHHHHH-------HHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMED 297 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk~~~g~~~~~~f~~~~~~~~~~~~-------~~va~~~l~~ 297 (625)
|+++|.|||||||+|+.|+++++.. +++.|+ +|+.+...... +....... .++...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~-----~is~gdllr~~~~~~~~~-------~~~~~~~~~~g~~vp~~~~~~l--- 66 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLP-----HISTGDLLRAEIKAGTPL-------GKKAKEYMEKGELVPDEIVNQL--- 66 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC-----eeehhHHHHHhhccccHH-------HHHHHHHHhCCCCCCHHHHHHH---
Confidence 7889999999999999999999988 899865 55543221110 00000000 0111122
Q ss_pred HHHHHHc---CCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhcc-----------CCCCCC
Q 006920 298 MISWMHE---GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ-----------SPDYAE 363 (625)
Q Consensus 298 ~~~~l~~---~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~-----------~pd~sd 363 (625)
+...+.+ .+..+|+|+...+..+.+.+.+.... ....+|.+.|+++.+++|...|+... .|...+
T Consensus 67 ~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~-~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~ 145 (210)
T TIGR01351 67 VKERLTQNQDNENGFILDGFPRTLSQAEALDALLKE-KIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPG 145 (210)
T ss_pred HHHHHhcCcccCCcEEEeCCCCCHHHHHHHHHHhcc-CCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCC
Confidence 2223332 14556999976777777777665321 23346666889988888887664210 000000
Q ss_pred C---------CCHHHHHHHHHHHHHhhhhccccCCCC----CeeEEeec
Q 006920 364 E---------PDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 399 (625)
Q Consensus 364 ~---------~d~e~~~~~~~~rl~~y~~~fEp~~e~----~~i~~id~ 399 (625)
. ...++-.+.+.+|+..|.....|+-+- ...+.||.
T Consensus 146 ~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~ 194 (210)
T TIGR01351 146 CDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDG 194 (210)
T ss_pred cCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEEC
Confidence 0 012234567888999998877776432 33455564
No 94
>PRK14530 adenylate kinase; Provisional
Probab=98.83 E-value=1.1e-08 Score=102.43 Aligned_cols=163 Identities=17% Similarity=0.216 Sum_probs=88.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHH-----HHHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEA-----RNEVAALAMEDMI 299 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~-----~~~va~~~l~~~~ 299 (625)
.|+++|.|||||||+|+.|++.++.. +++.|++-+...+.+.............+.. -..+...++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~-----~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~--- 76 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVE-----HVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVE--- 76 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe-----EEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHH---
Confidence 48889999999999999999999988 8888876554433222211100000000000 0012222222
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccC-----------CCCCC-----
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQS-----------PDYAE----- 363 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~-----------pd~sd----- 363 (625)
..+... ...|+|+......+++.+..+.. . -.+|.+.|+.+.+++|...|+.... |...+
T Consensus 77 ~~l~~~-~~~IldG~pr~~~q~~~l~~~~~--~-d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~ 152 (215)
T PRK14530 77 EALSDA-DGFVLDGYPRNLEQAEYLESITD--L-DVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDEC 152 (215)
T ss_pred HHHhcC-CCEEEcCCCCCHHHHHHHHHhcC--C-CEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCccc
Confidence 223333 34589985555666665554422 2 2244457888888877766542110 00000
Q ss_pred ----CCCHHHHHHHHHHHHHhhhhccccCCCC----CeeEEeec
Q 006920 364 ----EPDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 399 (625)
Q Consensus 364 ----~~d~e~~~~~~~~rl~~y~~~fEp~~e~----~~i~~id~ 399 (625)
....++..+.+.+|+..|.+..+|+-.- ...+.||.
T Consensus 153 ~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~ 196 (215)
T PRK14530 153 GGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDG 196 (215)
T ss_pred CCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 0012334567888999998877765322 34556775
No 95
>PLN02674 adenylate kinase
Probab=98.83 E-value=1.9e-08 Score=102.56 Aligned_cols=167 Identities=17% Similarity=0.183 Sum_probs=97.0
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCC----CcccCCCCHHHHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFRADNPEGMEARNEVAALAM 295 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~----~~f~~~~~~~~~~~~~~va~~~l 295 (625)
..+.-|++.|.|||||+|+|+.|++++++. +++.+++ |+........ ..+.... .. .-..+...++
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~-----his~GdllR~~i~~~s~~g~~i~~~~~~G-~l---vpd~iv~~lv 99 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLC-----HLATGDMLRAAVAAKTPLGIKAKEAMDKG-EL---VSDDLVVGII 99 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCc-----EEchhHHHHHHHhccChhhHHHHHHHHcC-Cc---cCHHHHHHHH
Confidence 445678899999999999999999999998 9998875 4433211100 0000000 00 0011222222
Q ss_pred HHHHHHHHc--CCcEEEEecCCCcHHHHHHHHHH-HcCCCeE-EEEEEecChHHHHHHHHHhhhcc--C---------CC
Q 006920 296 EDMISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQ--S---------PD 360 (625)
Q Consensus 296 ~~~~~~l~~--~g~vvIvDatn~~~~~R~~~~~l-~~~~~~v-vfle~~~~~e~i~~R~i~rr~~~--~---------pd 360 (625)
. ..+.. .+..+|+|+...+..+-+.+.++ ...+..+ .+|++.|+++.+++|...|+... . |.
T Consensus 100 ~---~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~ 176 (244)
T PLN02674 100 D---EAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPK 176 (244)
T ss_pred H---HHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCc
Confidence 2 22222 23456999988888887777766 4444332 45566889989998888775320 0 10
Q ss_pred CCCC---------CCHHHHHHHHHHHHHhhhhccccCCCC----CeeEEeec
Q 006920 361 YAEE---------PDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 399 (625)
Q Consensus 361 ~sd~---------~d~e~~~~~~~~rl~~y~~~fEp~~e~----~~i~~id~ 399 (625)
..+. ...++-.+...+|++.|.+.-+|+-+- ..++.||.
T Consensus 177 ~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida 228 (244)
T PLN02674 177 VPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHA 228 (244)
T ss_pred ccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEEC
Confidence 0000 012334567888999999877776432 23455665
No 96
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.81 E-value=3e-08 Score=110.93 Aligned_cols=133 Identities=19% Similarity=0.272 Sum_probs=85.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHH-HHHHHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-EVAALAMEDMISWMH 303 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~-~va~~~l~~~~~~l~ 303 (625)
-|+++|+|||||||+|+.|++.|++. ++++|.+++...|.+..+ ++...++..++.++ ++.+.+..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~-----~id~D~~i~~~~g~~i~~-i~~~~Ge~~fr~~E~~~l~~l~~------- 68 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQ-----FIDMDEEIERREGRSVRR-IFEEDGEEYFRLKEKELLRELVE------- 68 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCe-----EEECcHHHHHHcCCCHHH-HHHHhhhHHHHHHHHHHHHHHhh-------
Confidence 48999999999999999999999999 999999998888876654 34444555554333 22222222
Q ss_pred cCCcEEEEecCC---CcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 006920 304 EGGQVGIFDATN---SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLAN 380 (625)
Q Consensus 304 ~~g~vvIvDatn---~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~ 380 (625)
.... |+.+.. .....|+.++ + + .++| +.++.+++.+|.. . ..+|...+. .+++.+.|.+|.+.
T Consensus 69 -~~~~-Vis~Gggvv~~~~~r~~l~---~-~-~vI~--L~as~e~l~~Rl~-~--~~RPLl~~~--~e~l~~L~~~R~~l 134 (488)
T PRK13951 69 -RDNV-VVATGGGVVIDPENRELLK---K-E-KTLF--LYAPPEVLMERVT-T--ENRPLLREG--KERIREIWERRKQF 134 (488)
T ss_pred -cCCE-EEECCCccccChHHHHHHh---c-C-eEEE--EECCHHHHHHHhc-c--CCCCCcccc--HHHHHHHHHHHHHH
Confidence 2233 343321 1234444443 2 2 2444 5678777777663 3 246765432 46678889999999
Q ss_pred hhhc
Q 006920 381 YEKV 384 (625)
Q Consensus 381 y~~~ 384 (625)
|.+.
T Consensus 135 Y~~~ 138 (488)
T PRK13951 135 YTEF 138 (488)
T ss_pred Hhcc
Confidence 8764
No 97
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.80 E-value=4e-08 Score=95.43 Aligned_cols=158 Identities=17% Similarity=0.247 Sum_probs=81.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHHHHcCCCCCC----cccCCCCHHHHHHHHHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSA----DFFRADNPEGMEARNEVAALAMEDM 298 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk~~~g~~~~~----~f~~~~~~~~~~~~~~va~~~l~~~ 298 (625)
.+|+++|.|||||||+|+.|+++++.. +++.|+ +|+...+..... .++... ... -...+...+.+.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~l~~~~ 75 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFT-----HLSTGDLLRAEVASGSERGKQLQAIMESG-DLV--PLDTVLDLLKDAM 75 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHHHHHHHhcCCHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHH
Confidence 478999999999999999999999887 888866 444332211100 000000 000 0011112111212
Q ss_pred HHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHH
Q 006920 299 ISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 378 (625)
Q Consensus 299 ~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl 378 (625)
...+. .+..+|+|+......+.+.+. .....+..++++.|+.+.+.+|...|... ++-.+. + .+.+.+|+
T Consensus 76 ~~~~~-~~~~~i~dg~~~~~~q~~~~~--~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~--~~r~d~-~----~~~~~~r~ 145 (188)
T TIGR01360 76 VAALG-TSKGFLIDGYPREVKQGEEFE--RRIGPPTLVLYFDCSEDTMVKRLLKRAET--SGRVDD-N----EKTIKKRL 145 (188)
T ss_pred HcccC-cCCeEEEeCCCCCHHHHHHHH--HcCCCCCEEEEEECCHHHHHHHHHccccc--CCCCCC-C----HHHHHHHH
Confidence 22222 355669999766544443332 22223445666688988888887665321 111222 2 23455666
Q ss_pred HhhhhccccC----CCCCeeEEeec
Q 006920 379 ANYEKVYEPV----DEGSYIKMIDM 399 (625)
Q Consensus 379 ~~y~~~fEp~----~e~~~i~~id~ 399 (625)
..|.....|+ .+...+..||.
T Consensus 146 ~~~~~~~~~~~~~y~~~~~~~~id~ 170 (188)
T TIGR01360 146 ETYYKATEPVIAYYETKGKLRKINA 170 (188)
T ss_pred HHHHHhhHHHHHHHHhCCCEEEEEC
Confidence 6655433332 22234555665
No 98
>PLN02459 probable adenylate kinase
Probab=98.71 E-value=5.2e-08 Score=100.00 Aligned_cols=165 Identities=16% Similarity=0.236 Sum_probs=94.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHHHHcCCCCCC----cccCCCCHHHHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSA----DFFRADNPEGMEARNEVAALAM 295 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk~~~g~~~~~----~f~~~~~~~~~~~~~~va~~~l 295 (625)
.+++.|+++|.|||||||+|+.|++.+++. +++.++ +|+......... .+.... . ..-.++...++
T Consensus 27 ~~~~~ii~~G~PGsGK~T~a~~la~~~~~~-----~is~gdllR~ei~~~t~lg~~i~~~~~~G-~---lVPdeiv~~ll 97 (261)
T PLN02459 27 GRNVNWVFLGCPGVGKGTYASRLSKLLGVP-----HIATGDLVREEIKSSGPLGAQLKEIVNQG-K---LVPDEIIFSLL 97 (261)
T ss_pred cCccEEEEECCCCCCHHHHHHHHHHHhCCc-----EEeCcHHHHHHHhccchhHHHHHHHHHcC-C---ccCHHHHHHHH
Confidence 345668889999999999999999999988 898776 455432111000 000000 0 00012222222
Q ss_pred HHHHHHH-HcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccC----------------
Q 006920 296 EDMISWM-HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQS---------------- 358 (625)
Q Consensus 296 ~~~~~~l-~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~---------------- 358 (625)
.+.+.-. ......+|+|+...+..+-+.+.++. .. -.+|++.|+++.+++|...|+....
T Consensus 98 ~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~--~i-d~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~ 174 (261)
T PLN02459 98 SKRLEAGEEEGESGFILDGFPRTVRQAEILEGVT--DI-DLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGED 174 (261)
T ss_pred HHHHhcccccCCceEEEeCCCCCHHHHHHHHhcC--CC-CEEEEEECCHHHHHHHhhccccccccCcccccccccccccc
Confidence 2111111 12345679999888877766665442 22 2355567899899988877753100
Q ss_pred -------CC----------CCCCCCHHHHHHHHHHHHHhhhhccccCCCC----CeeEEeec
Q 006920 359 -------PD----------YAEEPDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 399 (625)
Q Consensus 359 -------pd----------~sd~~d~e~~~~~~~~rl~~y~~~fEp~~e~----~~i~~id~ 399 (625)
|. .. . ..++-.+...+|++.|...-.|+-+- ..++.||.
T Consensus 175 ~~~~~~~~p~~~~~~~~~~L~-~-R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~ 234 (261)
T PLN02459 175 GRPGIVMPPLLPPPECASKLI-T-RADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFEL 234 (261)
T ss_pred ccccccCCCCCCCcccccccc-c-CCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeC
Confidence 00 00 0 22334567888999999887776543 34455665
No 99
>PRK14528 adenylate kinase; Provisional
Probab=98.70 E-value=1.1e-07 Score=93.18 Aligned_cols=156 Identities=16% Similarity=0.182 Sum_probs=88.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCC----CcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~----~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
.|++.|.|||||||+|+.|+++++.. +++.|++ |+........ ..+...... .-..+...++.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~-----~is~~~~lr~~~~~~~~~g~~~~~~~~~g~l----vp~~~~~~~~~--- 70 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIP-----QISTGDILREAVKNQTAMGIEAKRYMDAGDL----VPDSVVIGIIK--- 70 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC-----eeeCCHHHHHHhhcCCHHHHHHHHHHhCCCc----cCHHHHHHHHH---
Confidence 48889999999999999999999988 8888875 4433211000 000000000 00111111111
Q ss_pred HHHHc--CCcEEEEecCCCcHHHHHHHHHH-HcCCC-eEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHH
Q 006920 300 SWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 375 (625)
Q Consensus 300 ~~l~~--~g~vvIvDatn~~~~~R~~~~~l-~~~~~-~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~ 375 (625)
..+.+ .....|+|+...+..+-+.+.++ ...+. .-.+|.+.|+++.+++|...|..... ..++..+.+.
T Consensus 71 ~~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~g-------r~dd~~e~i~ 143 (186)
T PRK14528 71 DRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEG-------RADDNEATIK 143 (186)
T ss_pred HHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccC-------CCCCCHHHHH
Confidence 22221 12346999865555665556555 33232 23455568899998888877643211 1122345688
Q ss_pred HHHHhhhhccccCCCC----CeeEEeec
Q 006920 376 NRLANYEKVYEPVDEG----SYIKMIDM 399 (625)
Q Consensus 376 ~rl~~y~~~fEp~~e~----~~i~~id~ 399 (625)
+|+..|.+..+|+-+- ..+..||.
T Consensus 144 ~Rl~~y~~~~~pv~~~y~~~~~~~~i~~ 171 (186)
T PRK14528 144 NRLDNYNKKTLPLLDFYAAQKKLSQVNG 171 (186)
T ss_pred HHHHHHHHHhHHHHHHHHhCCCEEEEEC
Confidence 8999999888876543 34555564
No 100
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.70 E-value=2.7e-07 Score=93.53 Aligned_cols=154 Identities=20% Similarity=0.218 Sum_probs=90.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHH--HHHH-----HHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEG--MEAR-----NEVAAL 293 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~--~~~~-----~~va~~ 293 (625)
..|+-|+++|.|||||||+|+.|++.+++. +++.|++-+........ + +... +... ..+...
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~-----~is~gdllr~~~~~~t~--l----g~~i~~~~~~G~lvpd~iv~~ 72 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLK-----HINMGNILREEIKAKTT--I----GKEIQKVVTSGNLVPDNLVIA 72 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCc-----EEECChHHHHHhhcCCh--H----HHHHHHHHHcCCcCCHHHHHH
Confidence 345569999999999999999999999999 99998754432211100 0 0000 0000 011122
Q ss_pred HHHHHH-HHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhcc---------------
Q 006920 294 AMEDMI-SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ--------------- 357 (625)
Q Consensus 294 ~l~~~~-~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~--------------- 357 (625)
++.+.+ ..+.......|+|+...+..++..+.+. +-...++++.++++.+++|...|+...
T Consensus 73 lv~~~l~~~~~~~~~g~iLDGfPRt~~Qa~~l~~~---~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~ 149 (229)
T PTZ00088 73 IVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKI---TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDP 149 (229)
T ss_pred HHHHHHHhhccccCceEEEecCCCCHHHHHHHHhc---CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceeccccccc
Confidence 222222 2222334567999966667776666543 223345666889999999988876210
Q ss_pred --CCC---------------CCCCCCHHHHHHHHHHHHHhhhhccccCCC
Q 006920 358 --SPD---------------YAEEPDFEAGLQDFKNRLANYEKVYEPVDE 390 (625)
Q Consensus 358 --~pd---------------~sd~~d~e~~~~~~~~rl~~y~~~fEp~~e 390 (625)
.|. .. . ..++-.+.+.+|++.|...-+|+-+
T Consensus 150 ~~~pp~~~~~~c~~~~~~~~l~-~-R~DD~~e~i~~Rl~~Y~~~t~pl~~ 197 (229)
T PTZ00088 150 YDMPPILPPADCEGCKGNPKLQ-K-RSDDTEEIVAHRLNTYESTNSPIIQ 197 (229)
T ss_pred ccCCCCCCCCcccccCCccccc-C-CCCCCHHHHHHHHHHHHHHhHHHHH
Confidence 010 00 1 2344567888999999987777643
No 101
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.68 E-value=1.5e-07 Score=89.88 Aligned_cols=146 Identities=14% Similarity=0.109 Sum_probs=77.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcC---CCCCCcccCCCCHHHHHHHHHHHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG---VNQSADFFRADNPEGMEARNEVAALAMEDMIS 300 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g---~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~ 300 (625)
++|+++|.|||||||+|+.|++.++.. +++.|++.+.... .+.. .+.... .+. ..+...+...+..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~-----~~~~~~~~~~~~~~~g~~~~-~~~~~~-~~~----~~~~~~~~~~i~~ 69 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLK-----LISAGDIFRELAAKMGLDLI-EFLNYA-EEN----PEIDKKIDRRIHE 69 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCc-----eecHHHHHHHHHHHcCCCHH-HHHHHH-hcC----cHHHHHHHHHHHH
Confidence 479999999999999999999999988 8998765443332 1111 000000 000 0011111111122
Q ss_pred HHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHH----H
Q 006920 301 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK----N 376 (625)
Q Consensus 301 ~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~----~ 376 (625)
....++ .+|+|+....- .+.. .+. +.|.+.|+.+.+.+|...|.. . +.+++.+.+. .
T Consensus 70 ~~~~~~-~~Vi~g~~~~~-------~~~~-~~d-~~v~v~a~~~~r~~R~~~R~~--------~-s~~~a~~~~~~~d~~ 130 (171)
T TIGR02173 70 IALKEK-NVVLESRLAGW-------IVRE-YAD-VKIWLKAPLEVRARRIAKREG--------K-SLTVARSETIEREES 130 (171)
T ss_pred HHhcCC-CEEEEecccce-------eecC-CcC-EEEEEECCHHHHHHHHHHccC--------C-CHHHHHHHHHHHHHH
Confidence 222344 44777765321 0111 122 345567888888777766531 1 4455555444 3
Q ss_pred HHHhhhhccccCCC--CCeeEEeec
Q 006920 377 RLANYEKVYEPVDE--GSYIKMIDM 399 (625)
Q Consensus 377 rl~~y~~~fEp~~e--~~~i~~id~ 399 (625)
|.+.|...|..-.. ..|-.+||+
T Consensus 131 ~~~~~~~~~~~~~~~~~~ydl~i~t 155 (171)
T TIGR02173 131 EKRRYLKFYGIDIDDLSIYDLVINT 155 (171)
T ss_pred HHHHHHHHhCCCccccccccEEEEC
Confidence 44455555544222 278889998
No 102
>PRK04040 adenylate kinase; Provisional
Probab=98.64 E-value=4.2e-07 Score=89.44 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=31.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH--cccCCcceEEechHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYL--RWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L--~~~g~~~~~~~~D~~Rk 264 (625)
|.+|+++|.|||||||+++.|++.| +.. +++.|++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~-----~~~~g~~~~ 40 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYK-----IVNFGDVML 40 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCe-----EEecchHHH
Confidence 5789999999999999999999999 444 677777643
No 103
>PRK06217 hypothetical protein; Validated
Probab=98.63 E-value=3.8e-07 Score=89.02 Aligned_cols=129 Identities=19% Similarity=0.185 Sum_probs=70.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 304 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~ 304 (625)
-|+++|.|||||||+|++|++.++.. +++.|.+.....+.. +... +.. +.... .+...+.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-----~~~~D~~~~~~~~~~----~~~~-~~~--~~~~~-------~~~~~~~~ 63 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-----HLDTDDYFWLPTDPP----FTTK-RPP--EERLR-------LLLEDLRP 63 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-----EEEcCceeeccCCCC----cccc-CCH--HHHHH-------HHHHHHhc
Confidence 49999999999999999999999887 899987654221110 1111 111 11111 11122222
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhc--cCCCCCCCCCHHHHHHHHHHHHHhh
Q 006920 305 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ--QSPDYAEEPDFEAGLQDFKNRLANY 381 (625)
Q Consensus 305 ~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~--~~pd~sd~~d~e~~~~~~~~rl~~y 381 (625)
+ ...|+|+.... .++... ...+ .++|| .++.+.+++|...|... .+|...+. +.++...+|.++...|
T Consensus 64 ~-~~~vi~G~~~~--~~~~~~--~~~d-~~i~L--d~~~~~~~~Rl~~R~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~ 133 (183)
T PRK06217 64 R-EGWVLSGSALG--WGDPLE--PLFD-LVVFL--TIPPELRLERLRLREFQRYGNRILPGG-DMHKASLEFLEWAASY 133 (183)
T ss_pred C-CCEEEEccHHH--HHHHHH--hhCC-EEEEE--ECCHHHHHHHHHcCcccccCcccCCCC-CHHHHHHHHHHHHHhc
Confidence 3 34588865543 222211 2222 24454 77988888888766422 22222333 4555555555555444
No 104
>PRK14526 adenylate kinase; Provisional
Probab=98.62 E-value=1.1e-07 Score=95.19 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=89.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCCC----cccCCCCHHHHHHHHHHHHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSA----DFFRADNPEGMEARNEVAALAMEDMIS 300 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~~----~f~~~~~~~~~~~~~~va~~~l~~~~~ 300 (625)
|+++|.|||||||+|+.|++.++.. +++.|++ |+......... .++... . ..-..+...++. .
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~-----~is~G~llr~~~~~~t~~g~~i~~~~~~g-~---lvpd~~~~~lv~---~ 70 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYY-----HISTGDLFRENILNSTPLGKEIKQIVENG-Q---LVPDSITIKIVE---D 70 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc-----eeecChHHHHhcccCChhhHHHHHHHHcC-c---cCChHHHHHHHH---H
Confidence 7889999999999999999999988 8887765 54332111000 000000 0 000112222222 2
Q ss_pred HHHc--CCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccC-----------CC-------
Q 006920 301 WMHE--GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQS-----------PD------- 360 (625)
Q Consensus 301 ~l~~--~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~-----------pd------- 360 (625)
.+.. ....+|+|+...+..+-+.+.++.. ...++++.|+++.+++|...|+.... |.
T Consensus 71 ~l~~~~~~~g~ilDGfPR~~~Qa~~l~~~~~---~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~ 147 (211)
T PRK14526 71 KINTIKNNDNFILDGFPRNINQAKALDKFLP---NIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDV 147 (211)
T ss_pred HHhcccccCcEEEECCCCCHHHHHHHHHhcC---CCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCC
Confidence 2221 2334588987777666666555421 13456667898888888877753210 00
Q ss_pred ----CCCCCCHHHHHHHHHHHHHhhhhccccCCCC----CeeEEeec
Q 006920 361 ----YAEEPDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 399 (625)
Q Consensus 361 ----~sd~~d~e~~~~~~~~rl~~y~~~fEp~~e~----~~i~~id~ 399 (625)
.. . ..++..+.+.+|++.|.+.-+|+-+- ..+..||.
T Consensus 148 ~~~~l~-~-R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~ 192 (211)
T PRK14526 148 CKGDLY-Q-RKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDA 192 (211)
T ss_pred CCCeee-c-cCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEEC
Confidence 00 0 23444678889999999887776432 34455665
No 105
>PRK13808 adenylate kinase; Provisional
Probab=98.62 E-value=5.6e-07 Score=95.52 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=88.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHHHHcCCCCCC----cccCCCCHHHHHHHHHHHHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSA----DFFRADNPEGMEARNEVAALAMEDMIS 300 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk~~~g~~~~~----~f~~~~~~~~~~~~~~va~~~l~~~~~ 300 (625)
|+|+|.|||||||+|+.|++.++.. +++.|+ +|+......... .+...... .-.++...++.+.+.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~-----~is~gdlLR~~i~~~s~~g~~~~~~~~~G~l----VPdeiv~~li~e~l~ 73 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIV-----QLSTGDMLRAAVAAGTPVGLKAKDIMASGGL----VPDEVVVGIISDRIE 73 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc-----eecccHHHHHHhhcCChhhHHHHHHHHcCCC----CCHHHHHHHHHHHHh
Confidence 7889999999999999999999988 898776 454321110000 00000000 001122222211111
Q ss_pred HHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCC-eEEEEEEecChHHHHHHHHHhhhccCC-CCCCCCCHHHHHHHHHHH
Q 006920 301 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNC-KIIFLETICNDRDIIERNIRLKIQQSP-DYAEEPDFEAGLQDFKNR 377 (625)
Q Consensus 301 ~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~-~vvfle~~~~~e~i~~R~i~rr~~~~p-d~sd~~d~e~~~~~~~~r 377 (625)
-.. .....|+|+...+..+.+.+..+ ...++ +-++|++.|+++.+++|...|+..... ... . ..++-.+.+.+|
T Consensus 74 ~~~-~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~-~-R~DD~~E~i~kR 150 (333)
T PRK13808 74 QPD-AANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEE-V-RADDTPEVLAKR 150 (333)
T ss_pred ccc-ccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCc-c-CCCCCHHHHHHH
Confidence 111 12346999866666776666665 33333 224555688988888887765321000 000 0 122234578889
Q ss_pred HHhhhhccccCCC----CCeeEEeec
Q 006920 378 LANYEKVYEPVDE----GSYIKMIDM 399 (625)
Q Consensus 378 l~~y~~~fEp~~e----~~~i~~id~ 399 (625)
+..|....+|+-+ ...++.||.
T Consensus 151 L~~Y~~~t~PLl~~Y~e~~~lv~IDa 176 (333)
T PRK13808 151 LASYRAQTEPLVHYYSEKRKLLTVDG 176 (333)
T ss_pred HHHHHHHhHHHHHHhhccCcEEEEEC
Confidence 9999887666432 234566775
No 106
>PRK06547 hypothetical protein; Provisional
Probab=98.61 E-value=5.4e-07 Score=87.45 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=67.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH-
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM- 298 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~- 298 (625)
...+.+|.++|.|||||||+|+.|++.++.. +++.|++.+...++ ....++. ....++..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~-----~~~~d~~~~~~~~~-----------~~~~~~l---~~~~l~~g~ 72 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQ-----LVHLDDLYPGWHGL-----------AAASEHV---AEAVLDEGR 72 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCC-----eecccceecccccC-----------ChHHHHH---HHHHHhCCC
Confidence 5678899999999999999999999998877 77777664311111 0011111 11110000
Q ss_pred -----HH--------H-HHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 299 -----IS--------W-MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 299 -----~~--------~-l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
.. + ..+.+.++|+++..... ..++.+...+..+++|++.++.+.+.+|+++|
T Consensus 73 ~~~~~yd~~~~~~~~~~~l~~~~vVIvEG~~al~---~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~R 138 (172)
T PRK06547 73 PGRWRWDWANNRPGDWVSVEPGRRLIIEGVGSLT---AANVALASLLGEVLTVWLDGPEALRKERALAR 138 (172)
T ss_pred CceecCCCCCCCCCCcEEeCCCCeEEEEehhhcc---HHHHHHhccCCCEEEEEEECCHHHHHHHHHhc
Confidence 00 0 01134567888886642 33444432244467777789998888888877
No 107
>PRK06696 uridine kinase; Validated
Probab=98.59 E-value=5e-07 Score=91.09 Aligned_cols=54 Identities=22% Similarity=0.347 Sum_probs=43.0
Q ss_pred HHHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 209 AAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 209 ~~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
.+||.........+|++|.++|.|||||||+|++|++.|+..|..+.+++.|++
T Consensus 8 ~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 8 KELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred HHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 455665543235689999999999999999999999999877777777777765
No 108
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.58 E-value=1.4e-06 Score=80.89 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=78.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 304 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~ 304 (625)
+|+++|.|||||||+|+.|++.++.. +++.|.+.+...+.. .+.......+... +.....-+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~-----~~~~~~i~~e~~~~~----------~~~~~~~~~i~~~-l~~~~~~~~~ 64 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLP-----YLDTGGIRTEEVGKL----------ASEVAAIPEVRKA-LDERQRELAK 64 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCc-----eeccccCCHHHHHHH----------HHHhcccHhHHHH-HHHHHHHHhh
Confidence 58999999999999999999999988 777763322110000 0000000111111 1111112333
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHh-hhh
Q 006920 305 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLAN-YEK 383 (625)
Q Consensus 305 ~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~-y~~ 383 (625)
++. +|+|+...... +.. .+. +.|.+.++.+..++|..+|-...+ .+. +++++.+.+.++-+. +..
T Consensus 65 ~~~-~Vidg~~~~~~-------~~~-~~~-~~i~l~~~~~~r~~R~~~r~~~~~---~~~-~~~~~~~~~~~~d~~~~~~ 130 (147)
T cd02020 65 KPG-IVLEGRDIGTV-------VFP-DAD-LKIFLTASPEVRAKRRAKQLQAKG---EGV-DLEEILAEIIERDERDSTR 130 (147)
T ss_pred CCC-EEEEeeeeeeE-------EcC-CCC-EEEEEECCHHHHHHHHHHHHHhCC---CCC-CHHHHHHHHHHHHHHhhhc
Confidence 444 47887653210 011 122 234447788888888877532211 122 678888888777553 344
Q ss_pred ccccCCCCCeeEEeec
Q 006920 384 VYEPVDEGSYIKMIDM 399 (625)
Q Consensus 384 ~fEp~~e~~~i~~id~ 399 (625)
.+.+.....|-.+||+
T Consensus 131 ~~~~~~~~~~dl~i~~ 146 (147)
T cd02020 131 YVAPLKLAEDAIVIDT 146 (147)
T ss_pred ccccccCCCCcEEEeC
Confidence 4445544477777876
No 109
>PRK03839 putative kinase; Provisional
Probab=98.58 E-value=2e-07 Score=90.49 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=31.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
.|+++|+|||||||+|+.|++.+++. +++.|++-+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~-----~id~d~~~~ 36 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYE-----YVDLTEFAL 36 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEehhhhhh
Confidence 58999999999999999999999998 899887643
No 110
>PRK04182 cytidylate kinase; Provisional
Probab=98.58 E-value=2e-07 Score=89.83 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=30.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
++|+++|.|||||||+|+.|++.|++. +++.|++
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~-----~id~~~~ 34 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLK-----HVSAGEI 34 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCc-----EecHHHH
Confidence 479999999999999999999999988 8887653
No 111
>PRK02496 adk adenylate kinase; Provisional
Probab=98.57 E-value=2.2e-07 Score=90.61 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=84.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCCC----cccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSA----DFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~~----~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
-|++.|.|||||||+|+.|++.++.. +++.|++ |+...+..... .+.... . ..-..+...++.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~-----~i~~~~~~~~~~~~~~~~g~~~~~~~~~g-~---~~~~~~~~~~l~--- 70 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIP-----HISTGDILRQAIKEQTPLGIKAQGYMDKG-E---LVPDQLVLDLVQ--- 70 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEEhHHHHHHHHhccChhHHHHHHHHHCC-C---ccCHHHHHHHHH---
Confidence 48889999999999999999999988 8888754 44332211100 000000 0 000111111111
Q ss_pred HHHHc--CCcEEEEecCCCcHHHHHHHHHH-HcCC-CeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHH
Q 006920 300 SWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGN-CKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 375 (625)
Q Consensus 300 ~~l~~--~g~vvIvDatn~~~~~R~~~~~l-~~~~-~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~ 375 (625)
..+.. .....|+|+...+..+.+.+.++ ...+ ....+|.+.|+.+.+.+|...|. +++ +. .+.+.
T Consensus 71 ~~l~~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~---~~d-----d~---~~~~~ 139 (184)
T PRK02496 71 ERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG---RKD-----DT---EEVIR 139 (184)
T ss_pred HHHhCcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC---CCC-----CC---HHHHH
Confidence 22221 12346999888777776666665 3332 23345666888877777765542 121 22 24566
Q ss_pred HHHHhhhhccccCC----CCCeeEEeec
Q 006920 376 NRLANYEKVYEPVD----EGSYIKMIDM 399 (625)
Q Consensus 376 ~rl~~y~~~fEp~~----e~~~i~~id~ 399 (625)
+|++.|.+.-+|+- +...++.||.
T Consensus 140 ~r~~~y~~~~~~v~~~~~~~~~~~~Ida 167 (184)
T PRK02496 140 RRLEVYREQTAPLIDYYRDRQKLLTIDG 167 (184)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 78888877444432 2234566775
No 112
>PRK14529 adenylate kinase; Provisional
Probab=98.57 E-value=2.5e-07 Score=93.34 Aligned_cols=122 Identities=13% Similarity=0.175 Sum_probs=70.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 304 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~ 304 (625)
|+|.|.|||||||+|+.|+++++.. +++.++ +|+...+...........-..+...-.++...++ ...|.+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-----~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv---~~~l~~ 74 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-----HIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMI---LETLKQ 74 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-----CcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHH---HHHHhc
Confidence 8889999999999999999999988 666554 3443211000000000000000000011112222 223322
Q ss_pred -CCcEEEEecCCCcHHHHHHHHHH-HcCCCe-EEEEEEecChHHHHHHHHHhhh
Q 006920 305 -GGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKI 355 (625)
Q Consensus 305 -~g~vvIvDatn~~~~~R~~~~~l-~~~~~~-vvfle~~~~~e~i~~R~i~rr~ 355 (625)
.....|+|+...+..+-+.+.++ .+.+.. -.+|++.|+++.+++|...|+.
T Consensus 75 ~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~ 128 (223)
T PRK14529 75 DGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRL 128 (223)
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCcc
Confidence 23457999988888887777665 443432 2456668999999999888753
No 113
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.56 E-value=3.1e-07 Score=82.83 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=30.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
+|+++|.|||||||+|+.|++.++.. +++.|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~-----~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFP-----VISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCE-----EEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCe-----EEEecce
Confidence 68999999999999999999999888 8999985
No 114
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.56 E-value=3.1e-07 Score=89.56 Aligned_cols=143 Identities=19% Similarity=0.242 Sum_probs=86.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCCCcccCCCCHHHHH-------HHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGME-------ARNEVAALAME 296 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~~~f~~~~~~~~~~-------~~~~va~~~l~ 296 (625)
-|++.|.|||||||+|+.|++.++.. |+++|++ |...... ... +.+... .-..++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~-----hlstgd~~r~~~~~~---t~l----g~~~k~~i~~g~lv~d~i~~~~v~ 69 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP-----HLDTGDILRAAIAER---TEL----GEEIKKYIDKGELVPDEIVNGLVK 69 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc-----EEcHhHHhHhhhccC---ChH----HHHHHHHHHcCCccchHHHHHHHH
Confidence 38899999999999999999999988 9997764 4322111 000 000000 01122222222
Q ss_pred HHHHHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCe-EEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHH
Q 006920 297 DMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDF 374 (625)
Q Consensus 297 ~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~-vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~ 374 (625)
..+....... .+|+|....+..+-+.+..+ .+.|.+ -..++|.++.+.++.|...|+. + .++-.+.+
T Consensus 70 ~rl~~~d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~--r--------~dd~~~~~ 138 (178)
T COG0563 70 ERLDEADCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV--R--------EDDNEETV 138 (178)
T ss_pred HHHHhhcccC-eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc--c--------ccCCHHHH
Confidence 2221221113 56999988887766666655 554533 3566778888788888776632 1 11223567
Q ss_pred HHHHHhhhhccccCCC
Q 006920 375 KNRLANYEKVYEPVDE 390 (625)
Q Consensus 375 ~~rl~~y~~~fEp~~e 390 (625)
.+|+..|.+...|+-+
T Consensus 139 ~~R~~~y~~~~~pli~ 154 (178)
T COG0563 139 KKRLKVYHEQTAPLIE 154 (178)
T ss_pred HHHHHHHHhcccchhh
Confidence 7899999888877654
No 115
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.54 E-value=5.7e-07 Score=86.62 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=92.9
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCCCcccCCCCHHHHHHH----------
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR---------- 287 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~~~f~~~~~~~~~~~~---------- 287 (625)
....+.||++.|-|||||-|.+.++++.+++. |++.+++ |++.... ..+.+....
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ft-----HlSaGdLLR~E~~~~---------gse~g~~I~~~i~~G~iVP 69 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFT-----HLSAGDLLRAEIASA---------GSERGALIKEIIKNGDLVP 69 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHcCce-----eecHHHHHHHHHccc---------cChHHHHHHHHHHcCCcCc
Confidence 45677899999999999999999999999999 9998874 5543221 112222111
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCH
Q 006920 288 NEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF 367 (625)
Q Consensus 288 ~~va~~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~ 367 (625)
.++...+++++.......+. .+||+-.-...+...|..-......+ .|.+.|+.+++++|.+.|.+..+ -+|
T Consensus 70 ~ei~~~LL~~am~~~~~~~~-fLIDGyPR~~~q~~~fe~~i~~~~~f-vl~fdc~ee~~l~Rll~R~q~~~--R~D---- 141 (195)
T KOG3079|consen 70 VEITLSLLEEAMRSSGDSNG-FLIDGYPRNVDQLVEFERKIQGDPDF-VLFFDCPEETMLKRLLHRGQSNS--RSD---- 141 (195)
T ss_pred HHHHHHHHHHHHHhcCCCCe-EEecCCCCChHHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHhhcccCC--CCC----
Confidence 23333344333322222222 69998777777777776653322222 33448899999999998865422 222
Q ss_pred HHHHHHHHHHHHhhhhccccC
Q 006920 368 EAGLQDFKNRLANYEKVYEPV 388 (625)
Q Consensus 368 e~~~~~~~~rl~~y~~~fEp~ 388 (625)
+-.+..++|++.|.+.-.|+
T Consensus 142 -Dn~esikkR~et~~~~t~Pv 161 (195)
T KOG3079|consen 142 -DNEESIKKRLETYNKSTLPV 161 (195)
T ss_pred -CchHHHHHHHHHHHHcchHH
Confidence 22356677888887765554
No 116
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.52 E-value=7.1e-07 Score=87.08 Aligned_cols=153 Identities=14% Similarity=0.079 Sum_probs=84.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH-H----
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM-I---- 299 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~-~---- 299 (625)
+|.++|.|||||||+|+.|++.+...|.++.+++.|++-+-..........++......++...+....+.+.- .
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58899999999999999999999888888899999987542211111111222211112222222222221100 0
Q ss_pred -H-----------HHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHH-HHHHHHHhhhccCCCCCCCCC
Q 006920 300 -S-----------WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRD-IIERNIRLKIQQSPDYAEEPD 366 (625)
Q Consensus 300 -~-----------~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~-i~~R~i~rr~~~~pd~sd~~d 366 (625)
. .......++|+++.+... ..++++.. +.|++.++.+. .+.|++.|-...+ +. +
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~---~~l~~~~d-----~~I~vd~~~~~~rl~rri~RD~~~r----g~-~ 147 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALN---ERLRSLLD-----IRVAVSGGVHLNRLLRRVVRDIQFR----GY-S 147 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcC---HhHHhhcC-----EEEEEeCCccHHHHHHHHHHhHHhh----CC-C
Confidence 0 000134678899888853 23443321 23344566665 5666666543222 22 5
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCC
Q 006920 367 FEAGLQDFKNRLANYEKVYEPVDEG 391 (625)
Q Consensus 367 ~e~~~~~~~~rl~~y~~~fEp~~e~ 391 (625)
.++.+.. ....+.++..|+|+...
T Consensus 148 ~~~~i~~-~~~~~~~~~~~~~~~~~ 171 (179)
T cd02028 148 AELTILM-WPSVPSGEEFIIPPLQE 171 (179)
T ss_pred HHHHhhh-cccccCchhhcCCCchh
Confidence 6666666 34667777777766544
No 117
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.51 E-value=3.2e-07 Score=86.62 Aligned_cols=127 Identities=21% Similarity=0.336 Sum_probs=75.9
Q ss_pred EEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHHHHcCCCCCCcccCCCCHHHHHHH----------HHHHHHHHH
Q 006920 228 LVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEAR----------NEVAALAME 296 (625)
Q Consensus 228 l~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk~~~g~~~~~~f~~~~~~~~~~~~----------~~va~~~l~ 296 (625)
+.|-|||||||+|+.||++++.. +++.++ +|+..... ...+.... ..+...++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~-----~is~~~llr~~~~~~----------s~~g~~i~~~l~~g~~vp~~~v~~ll~ 65 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV-----HISVGDLLREEIKSD----------SELGKQIQEYLDNGELVPDELVIELLK 65 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE-----EEEHHHHHHHHHHTT----------SHHHHHHHHHHHTTSS--HHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc-----eechHHHHHHHHhhh----------hHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 57999999999999999999988 999876 45544221 11111100 111122222
Q ss_pred HHHHHHH--cCCcEEEEecCCCcHHHHHHHHHH-HcCCCeE-EEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHH
Q 006920 297 DMISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 372 (625)
Q Consensus 297 ~~~~~l~--~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~v-vfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~ 372 (625)
..+. ......|+|+...+..+-+.+.+. ...++.+ .+|.+.|+++.+++|... + +. +
T Consensus 66 ---~~l~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~----------d--~~----~ 126 (151)
T PF00406_consen 66 ---ERLEQPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ----------D--NE----E 126 (151)
T ss_dssp ---HHHHSGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT----------G--SH----H
T ss_pred ---HHHhhhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc----------C--CH----H
Confidence 2232 234567999988877766666664 3344443 677778998888887654 1 22 3
Q ss_pred HHHHHHHhhhhccccC
Q 006920 373 DFKNRLANYEKVYEPV 388 (625)
Q Consensus 373 ~~~~rl~~y~~~fEp~ 388 (625)
.+.+|++.|.+..+|+
T Consensus 127 ~i~~Rl~~y~~~~~~i 142 (151)
T PF00406_consen 127 VIKKRLEEYRENTEPI 142 (151)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4667888887765553
No 118
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.50 E-value=9.1e-07 Score=83.62 Aligned_cols=146 Identities=19% Similarity=0.223 Sum_probs=77.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHHHHcCCCCCC-cccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSA-DFFRADNPEGMEARNEVAALAMEDMISW 301 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk~~~g~~~~~-~f~~~~~~~~~~~~~~va~~~l~~~~~~ 301 (625)
++|.+.|+|||||||+|+.||++++.. +++.+. .|..-..++.+. +|. ...++.. -..+.++.-..-
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~-----~vsaG~iFR~~A~e~gmsl~ef~-~~AE~~p-----~iD~~iD~rq~e 69 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLK-----LVSAGTIFREMARERGMSLEEFS-RYAEEDP-----EIDKEIDRRQKE 69 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCc-----eeeccHHHHHHHHHcCCCHHHHH-HHHhcCc-----hhhHHHHHHHHH
Confidence 468899999999999999999999999 888765 565433333321 121 1001110 111111211111
Q ss_pred HHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 006920 302 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 381 (625)
Q Consensus 302 l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~y 381 (625)
+...+++ |+.. +-..| +.+ ...-+-|++.+|.+...+|...|- +. +.+++.+....|-..-
T Consensus 70 ~a~~~nv-Vleg------rLA~W--i~k-~~adlkI~L~Apl~vRa~Ria~RE--------gi-~~~~a~~~~~~RE~se 130 (179)
T COG1102 70 LAKEGNV-VLEG------RLAGW--IVR-EYADLKIWLKAPLEVRAERIAKRE--------GI-DVDEALAETVEREESE 130 (179)
T ss_pred HHHcCCe-EEhh------hhHHH--Hhc-cccceEEEEeCcHHHHHHHHHHhc--------CC-CHHHHHHHHHHHHHHH
Confidence 2225555 6643 11122 222 112223444788777777766553 22 6777777766665554
Q ss_pred hhcccc---CCCC---CeeEEeec
Q 006920 382 EKVYEP---VDEG---SYIKMIDM 399 (625)
Q Consensus 382 ~~~fEp---~~e~---~~i~~id~ 399 (625)
.+.|.. ++-+ -|-.+||+
T Consensus 131 ~kRY~~~YgIDidDlSiyDLVinT 154 (179)
T COG1102 131 KKRYKKIYGIDIDDLSIYDLVINT 154 (179)
T ss_pred HHHHHHHhCCCCccceeeEEEEec
Confidence 444443 2222 35566676
No 119
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.49 E-value=9.9e-06 Score=78.90 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=29.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEE
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 257 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~ 257 (625)
++|++.|.+||||||+++.|+++|...|..+..+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4799999999999999999999997767666555
No 120
>PRK07261 topology modulation protein; Provisional
Probab=98.47 E-value=8.1e-07 Score=86.00 Aligned_cols=99 Identities=17% Similarity=0.254 Sum_probs=59.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 304 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~ 304 (625)
-|+++|.|||||||+|+.|++.++.. +++.|.+.- .. .+.....++ ....+..++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~-----~i~~D~~~~---~~----~~~~~~~~~-----------~~~~~~~~~~- 57 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCP-----VLHLDTLHF---QP----NWQERDDDD-----------MIADISNFLL- 57 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC-----eEecCCEEe---cc----ccccCCHHH-----------HHHHHHHHHh-
Confidence 38999999999999999999998877 777776531 10 111111111 1111222233
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhh
Q 006920 305 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 305 ~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr 354 (625)
++. .|+|+++........+.. .. .++|+ .+|...++.|.++|.
T Consensus 58 ~~~-wIidg~~~~~~~~~~l~~---ad-~vI~L--d~p~~~~~~R~lkR~ 100 (171)
T PRK07261 58 KHD-WIIDGNYSWCLYEERMQE---AD-QIIFL--NFSRFNCLYRAFKRY 100 (171)
T ss_pred CCC-EEEcCcchhhhHHHHHHH---CC-EEEEE--cCCHHHHHHHHHHHH
Confidence 344 699999875333333322 11 24454 678888888888874
No 121
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.44 E-value=2.8e-06 Score=91.74 Aligned_cols=45 Identities=36% Similarity=0.531 Sum_probs=40.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
...|.+|+|+||-||||||.|.+||.+|...|.++-++..|.||=
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 457899999999999999999999999988888898999998863
No 122
>PRK08356 hypothetical protein; Provisional
Probab=98.44 E-value=6.1e-06 Score=81.45 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=26.8
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
..++|+++|.|||||||+|+.|++ ++.. +++.++
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~-~g~~-----~is~~~ 37 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE-KGFC-----RVSCSD 37 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH-CCCc-----EEeCCC
Confidence 457899999999999999999964 5544 666554
No 123
>PRK08118 topology modulation protein; Reviewed
Probab=98.40 E-value=5e-06 Score=80.23 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=29.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
-|+++|.|||||||+|+.|++.++.. +++.|.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~-----~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIP-----VHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC-----ceecchh
Confidence 38999999999999999999999988 7887765
No 124
>PRK08233 hypothetical protein; Provisional
Probab=98.40 E-value=5.8e-06 Score=79.79 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=25.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
++++|+++|.|||||||+|+.|+++|+
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468999999999999999999999986
No 125
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.40 E-value=1.5e-06 Score=85.11 Aligned_cols=26 Identities=27% Similarity=0.180 Sum_probs=23.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
.+|+++|.|||||||+++.|+..++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCC
Confidence 47999999999999999999887764
No 126
>PRK07667 uridine kinase; Provisional
Probab=98.38 E-value=8.6e-06 Score=80.35 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=38.2
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
..+.+|.++|.|||||||+|+.|++.|+..|.++.+++.|++
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 445899999999999999999999999988889999999984
No 127
>PRK13973 thymidylate kinase; Provisional
Probab=98.38 E-value=2.1e-05 Score=78.78 Aligned_cols=164 Identities=18% Similarity=0.092 Sum_probs=84.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEe-------chHHHHHHcCCCCCCcccCCCCHHHH--HHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN-------VGKYRRLKHGVNQSADFFRADNPEGM--EARNEVAAL 293 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~-------~D~~Rk~~~g~~~~~~f~~~~~~~~~--~~~~~va~~ 293 (625)
+.+|++-|.+||||||.++.|+++|...|.++.... .+.+|+.+.+.... .+ +.... -.....+..
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~-~~----~~~~~~ll~~a~r~~~ 77 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAE-LY----GPRMEALLFAAARDDH 77 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCcc-CC----CHHHHHHHHHHHHHHH
Confidence 678999999999999999999999988777776662 45567665442211 11 12211 111111111
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCc------------HHHHHHHHHHHcC-CCeEEEEEEecChHHHHHHHHHhhhccCCC
Q 006920 294 AMEDMISWMHEGGQVGIFDATNSS------------RKRRNMLMKMAEG-NCKIIFLETICNDRDIIERNIRLKIQQSPD 360 (625)
Q Consensus 294 ~l~~~~~~l~~~g~vvIvDatn~~------------~~~R~~~~~l~~~-~~~vvfle~~~~~e~i~~R~i~rr~~~~pd 360 (625)
..+.+...+. .|.+||.|--... ......+...... ..+=+.+.+.|+++..++|...|......+
T Consensus 78 ~~~~i~~~l~-~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~ 156 (213)
T PRK13973 78 VEEVIRPALA-RGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPD 156 (213)
T ss_pred HHHHHHHHHH-CCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccC
Confidence 1122233444 4667787754421 1122222222111 123334445789888888876664221111
Q ss_pred CCCCCCHH-HHHHHHHHHHHhhhhccccCCCCCeeEEeec
Q 006920 361 YAEEPDFE-AGLQDFKNRLANYEKVYEPVDEGSYIKMIDM 399 (625)
Q Consensus 361 ~sd~~d~e-~~~~~~~~rl~~y~~~fEp~~e~~~i~~id~ 399 (625)
..+ +-.+-+.++.+.|.+..+- .+..+++||.
T Consensus 157 -----~~e~~~~~~~~~~~~~y~~l~~~--~~~~~~~Ida 189 (213)
T PRK13973 157 -----RFEKEDLAFHEKRREAFLQIAAQ--EPERCVVIDA 189 (213)
T ss_pred -----chhhchHHHHHHHHHHHHHHHHh--CCCcEEEEcC
Confidence 122 1233445566666654421 1124566676
No 128
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.37 E-value=1.8e-05 Score=82.86 Aligned_cols=139 Identities=12% Similarity=0.126 Sum_probs=82.0
Q ss_pred HHHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCC--------cc-----
Q 006920 209 AAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA--------DF----- 275 (625)
Q Consensus 209 ~~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~--------~f----- 275 (625)
+.+.+... ....|++|+++|.+||||||+|+.||++|+.. .+++.|.+|+.+...-..+ .|
T Consensus 80 y~~~~~i~--~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~----~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~ 153 (301)
T PRK04220 80 YLLWRRIR--KSKEPIIILIGGASGVGTSTIAFELASRLGIR----SVIGTDSIREVMRKIISKELLPTLHESSYTAWKS 153 (301)
T ss_pred HHHHHHHh--cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCC----EEEechHHHHHHHHhcchhhccchhhhhhhhhhc
Confidence 45555554 35689999999999999999999999999754 3788999996554311000 00
Q ss_pred -c--CCCC---HHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHH
Q 006920 276 -F--RADN---PEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 349 (625)
Q Consensus 276 -~--~~~~---~~~~~~~~~va~~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R 349 (625)
. +... -.++......+...++..+.-....|..+|+-+....+..-+... .++. .++.+.|...+++.++.
T Consensus 154 l~~~~~~~~~~l~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~--~~~~-~~i~~~l~i~~ee~h~~ 230 (301)
T PRK04220 154 LRRPPPPEPPVIYGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKY--LENP-NVFMFVLTLSDEEAHKA 230 (301)
T ss_pred ccCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhh--hcCC-CEEEEEEEECCHHHHHH
Confidence 0 1111 112222222222234444433333567779999999987543311 2222 23444566677777777
Q ss_pred HHHhhhc
Q 006920 350 NIRLKIQ 356 (625)
Q Consensus 350 ~i~rr~~ 356 (625)
|...|..
T Consensus 231 RF~~R~~ 237 (301)
T PRK04220 231 RFYARAR 237 (301)
T ss_pred HHHHHHh
Confidence 7665544
No 129
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.37 E-value=1.3e-05 Score=78.92 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=29.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceE
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 256 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~ 256 (625)
++.+|++.|.+||||||+++.|+++|...|..+.+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 35799999999999999999999999766544443
No 130
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.36 E-value=5.5e-06 Score=80.22 Aligned_cols=27 Identities=22% Similarity=0.047 Sum_probs=24.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+|+++|.|||||||+++.|+..++..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~ 28 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGD 28 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcC
Confidence 479999999999999999999987643
No 131
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.33 E-value=2.5e-05 Score=76.57 Aligned_cols=35 Identities=31% Similarity=0.342 Sum_probs=30.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEE
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 257 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~ 257 (625)
+++|++.|.+||||||+++.|+++|...|..+.++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 57899999999999999999999998877666543
No 132
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.29 E-value=9.5e-06 Score=77.29 Aligned_cols=142 Identities=18% Similarity=0.291 Sum_probs=81.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc-ccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH-
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM- 302 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~-~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l- 302 (625)
||+=++-+||||||+|.+|+.-++ |- ++..|++-. + +.. +.++.+ +..|
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~wg-----HvQnDnI~~-------------k-~~~------~f~~~~----l~~L~ 51 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGEWG-----HVQNDNITG-------------K-RKP------KFIKAV----LELLA 51 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCCCC-----ccccCCCCC-------------C-CHH------HHHHHH----HHHHh
Confidence 466689999999999999999999 98 777765511 1 111 112222 2223
Q ss_pred HcCCcEEEEecCCCcHHHHHHHHHH-Hc--C-------CCeEEEEEEecC--hHHH----HHHHHHhhhccCCCCCCCCC
Q 006920 303 HEGGQVGIFDATNSSRKRRNMLMKM-AE--G-------NCKIIFLETICN--DRDI----IERNIRLKIQQSPDYAEEPD 366 (625)
Q Consensus 303 ~~~g~vvIvDatn~~~~~R~~~~~l-~~--~-------~~~vvfle~~~~--~e~i----~~R~i~rr~~~~pd~sd~~d 366 (625)
.....+||+|=.|-....|+.+.+. .+ . +++++.|...-+ .+++ .+|.++| ....-.+.-. +
T Consensus 52 ~~~~~vViaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~R-GDNHQTika~-~ 129 (168)
T PF08303_consen 52 KDTHPVVIADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLAR-GDNHQTIKAD-S 129 (168)
T ss_pred hCCCCEEEEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhc-CcCcceeecC-C
Confidence 2467888999999998888877766 22 2 455655554332 2222 2222222 2111122211 1
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCC-----CeeEEeec
Q 006920 367 FEAGLQDFKNRLANYEKVYEPVDEG-----SYIKMIDM 399 (625)
Q Consensus 367 ~e~~~~~~~~rl~~y~~~fEp~~e~-----~~i~~id~ 399 (625)
. -.+.....+..+.+.|||++.. .+-.+||+
T Consensus 130 ~--~~~~~~~Im~gFi~rfep~~~~~~pD~~FD~vI~L 165 (168)
T PF08303_consen 130 K--DEKKVEGIMEGFIKRFEPVDPDREPDSGFDHVIDL 165 (168)
T ss_pred C--CHHHHHHHHHHHHHhcCCCCCCCCCccccCEeEeC
Confidence 0 1244556677777788888764 34445554
No 133
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.26 E-value=1.3e-05 Score=79.67 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=34.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
..++.+|.++|.|||||||+|+.|++.++ +..+.+++.|.+
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~~ 43 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDSY 43 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCcc
Confidence 35789999999999999999999999984 335557788765
No 134
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.26 E-value=2.2e-05 Score=77.74 Aligned_cols=39 Identities=23% Similarity=0.130 Sum_probs=34.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH 267 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~ 267 (625)
.+|.++|.+||||||+|+.|++.++.. ++|.|.+.+...
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~-----~i~~D~~~~~~~ 40 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIP-----ILDADIYAREAL 40 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCe-----EeeCcHHHHHHH
Confidence 379999999999999999999988988 899998766543
No 135
>PRK13975 thymidylate kinase; Provisional
Probab=98.25 E-value=1.4e-05 Score=78.32 Aligned_cols=27 Identities=33% Similarity=0.333 Sum_probs=25.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
+++|++.|++||||||+|+.|+++|+.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999999999984
No 136
>PRK06761 hypothetical protein; Provisional
Probab=98.25 E-value=5.3e-06 Score=86.45 Aligned_cols=121 Identities=13% Similarity=0.061 Sum_probs=69.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-H-HHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-R-RLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 300 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-R-k~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~ 300 (625)
+.+|+++|+|||||||+++.|+++|...|+++..+...+. + .... ....+.........+.....++.+. ..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~---~~~~~~~eer~~~l~~~~~f~~~l~---~~ 76 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYD---GVACFTKEEFDRLLSNYPDFKEVLL---KN 76 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhc---cccCCCHHHHHHHHHhhhHHHHHHH---HH
Confidence 3589999999999999999999999988887776532211 1 1111 1222222222222222233222222 23
Q ss_pred HHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHH
Q 006920 301 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNI 351 (625)
Q Consensus 301 ~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i 351 (625)
.+.. |..+|+-....+..+|+.+..-.-....+.+++ .+|.+.+.+|..
T Consensus 77 ~~~~-g~~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~~ 125 (282)
T PRK06761 77 VLKK-GDYYLLPYRKIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELIT 125 (282)
T ss_pred HHHc-CCeEEEEehhhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHHH
Confidence 3333 455688888899999999885211122345555 667555555443
No 137
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.23 E-value=2.6e-05 Score=81.73 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=65.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 302 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l 302 (625)
..+|+++|++||||||+++.|+ .+++. .++. +. . .........+... .
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~-~~g~~-----~~d~--~~-----------------~---~L~~~l~~~~~~~---~- 53 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE-DLGYY-----CVDN--LP-----------------P---SLLPKLVELLAQS---G- 53 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH-HcCCe-----EECC--cC-----------------H---HHHHHHHHHHHhc---C-
Confidence 3589999999999999999996 34544 3321 10 0 1111222211110 0
Q ss_pred HcCCcEEEEecCCC--cHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCC
Q 006920 303 HEGGQVGIFDATNS--SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAE 363 (625)
Q Consensus 303 ~~~g~vvIvDatn~--~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd 363 (625)
......+++|..+. .+..++.+..+.+.|+.+.+|++.++.+.+++|....+ ..+|...+
T Consensus 54 ~~~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~r-r~RPLl~~ 115 (288)
T PRK05416 54 GIRKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETR-RRHPLSGD 115 (288)
T ss_pred CCCCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcc-cCCCccCC
Confidence 01345678999876 34677777777666777666777889888888765433 34676543
No 138
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.20 E-value=1.8e-05 Score=78.23 Aligned_cols=28 Identities=32% Similarity=0.301 Sum_probs=25.2
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
..+.+|+++|.+||||||+++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3567899999999999999999999875
No 139
>PLN02348 phosphoribulokinase
Probab=98.20 E-value=2.5e-05 Score=84.51 Aligned_cols=158 Identities=12% Similarity=0.165 Sum_probs=83.1
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcccC---------------CcceEEechHHHH-HHcCCCC-CCcccCCCCH
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG---------------HDTKHFNVGKYRR-LKHGVNQ-SADFFRADNP 281 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g---------------~~~~~~~~D~~Rk-~~~g~~~-~~~f~~~~~~ 281 (625)
...+|.+|-+.|-|||||||+|+.|+..|+..+ ..+.+++.|+|=. ...+... ...+... ..
T Consensus 45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP-~a 123 (395)
T PLN02348 45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDP-RA 123 (395)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCc-cc
Confidence 357889999999999999999999999997432 3456888887611 0001000 0001111 11
Q ss_pred HHHHHHHHHHHHHHHH-HHH--H------------HHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHH
Q 006920 282 EGMEARNEVAALAMED-MIS--W------------MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDI 346 (625)
Q Consensus 282 ~~~~~~~~va~~~l~~-~~~--~------------l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i 346 (625)
..+..+.+....+.+. ... . ......++|+++..+... +.++.+. + ..+|| .|+.+..
T Consensus 124 ~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~--e~lr~l~--D-~~IyV--d~~~dvr 196 (395)
T PLN02348 124 NNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYD--ERVRDLL--D-FSIYL--DISDDVK 196 (395)
T ss_pred ccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccC--ccccccC--c-EEEEE--ECCHHHH
Confidence 2223222222222210 000 0 001234667776555321 1122221 1 23444 6788888
Q ss_pred HHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHhhhhccccCC
Q 006920 347 IERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEPVD 389 (625)
Q Consensus 347 ~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~y~~~fEp~~ 389 (625)
+.|+++|....+ +. +.+++.+.+.+|...|....+|.-
T Consensus 197 l~RRI~RD~~eR----G~-S~EeV~~~i~ar~pd~~~yI~pqk 234 (395)
T PLN02348 197 FAWKIQRDMAER----GH-SLESIKASIEARKPDFDAYIDPQK 234 (395)
T ss_pred HHHHHHhhHhhc----CC-CHHHHHHHHHhcCcchhhhccccc
Confidence 788887754322 23 677787777777666655555443
No 140
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.19 E-value=1.8e-05 Score=77.92 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=84.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCc----ceEEechHHHHH-----HcCCCCCCcccCCCCHHHHHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHD----TKHFNVGKYRRL-----KHGVNQSADFFRADNPEGMEARNEVAALAM 295 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~----~~~~~~D~~Rk~-----~~g~~~~~~f~~~~~~~~~~~~~~va~~~l 295 (625)
||-++|.|||||||+|+.|+..|+..++. ..++..|.+... ..+......-+.......++...+....+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 68899999999999999999999977766 456666643211 111111111111111222233333222221
Q ss_pred HHHHH-----------------HHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccC
Q 006920 296 EDMIS-----------------WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQS 358 (625)
Q Consensus 296 ~~~~~-----------------~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~ 358 (625)
+ ... .......++|+++.+..-. +.++.+.. -.+|| .++.+..+.|++.|....
T Consensus 81 ~-g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~--~~l~~l~D---~~ifl--d~~~~~~l~Rri~RD~~~- 151 (194)
T PF00485_consen 81 N-GGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYD--EELRDLFD---LKIFL--DADEDLRLERRIQRDVAE- 151 (194)
T ss_dssp T-TSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSS--HCHGGG-S---EEEEE--EE-HHHHHHHHHHHHHHH-
T ss_pred C-CCcccccccccccccceeeeeecCCCCEEEEcccceeee--eeecccce---eEEEe--cccHHHHHHHHhhhhccc-
Confidence 1 000 0112346778888875411 11333321 23455 567777888888875432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhhccccCCC
Q 006920 359 PDYAEEPDFEAGLQDFKNRLANYEKVYEPVDE 390 (625)
Q Consensus 359 pd~sd~~d~e~~~~~~~~rl~~y~~~fEp~~e 390 (625)
.+. +.+++.+.+..+...|....+|-.+
T Consensus 152 ---rG~-~~~~~~~~~~~~~~~~~~~I~p~~~ 179 (194)
T PF00485_consen 152 ---RGR-SPEEVIAQYERVRPGYERYIEPQKE 179 (194)
T ss_dssp ---S-S--HHHHHHHHHTHHHHHHHCTGGGGG
T ss_pred ---cCC-cceeEEEEeecCChhhhhheecccc
Confidence 233 7899999999888888887777543
No 141
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.17 E-value=2.2e-05 Score=86.25 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=39.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
.+|.+|+|+|++|+||||++.+||.++...|.++-+++.|.+|
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4589999999999999999999999998778888899999887
No 142
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.17 E-value=1.8e-05 Score=76.54 Aligned_cols=27 Identities=30% Similarity=0.227 Sum_probs=23.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+|+++|.+||||||+++.|++.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~ 28 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNL 28 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccc
Confidence 579999999999999999999976543
No 143
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.15 E-value=5.8e-06 Score=74.66 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=21.2
Q ss_pred EEEEccCCCCHHHHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L 247 (625)
|+++|.|||||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 144
>PRK15453 phosphoribulokinase; Provisional
Probab=98.13 E-value=1.7e-05 Score=82.18 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=38.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
.++.+|.++|-|||||||+|++|++.++..++.+.+++.|.|.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 45679999999999999999999999988888888999998754
No 145
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.11 E-value=3e-05 Score=77.32 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.8
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.+..+.+|+++|.|||||||+++.|.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3567899999999999999999999765
No 146
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.08 E-value=4.6e-05 Score=74.93 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=25.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.+|.+|+|+|.|||||||+++.|.+.++
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3688999999999999999999988764
No 147
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.06 E-value=3.3e-05 Score=77.11 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=82.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCC---CcccCCCCHHHHHHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS---ADFFRADNPEGMEARNEVAALAMED 297 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~---~~f~~~~~~~~~~~~~~va~~~l~~ 297 (625)
.++.+|-+.|-+||||||+|+.|...|+.. .+.+++.|+|=+...-.... ..-++....-..+...+-...+++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g 83 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQG 83 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcC
Confidence 456899999999999999999999999843 44577777764321111110 0011111111122222222222110
Q ss_pred H-H-----HH----------HHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCC
Q 006920 298 M-I-----SW----------MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDY 361 (625)
Q Consensus 298 ~-~-----~~----------l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~ 361 (625)
- . .+ -.....+||+++..+.-. +.++++.. + -+|| .++.+.++.|++.|....+
T Consensus 84 ~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~~~d--~-kIfv--dtd~D~RliRri~RD~~~r--- 153 (218)
T COG0572 84 KPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRDLMD--L-KIFV--DTDADVRLIRRIKRDVQER--- 153 (218)
T ss_pred CcccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHhhcC--E-EEEE--eCCccHHHHHHHHHHHHHh---
Confidence 0 0 00 001245677777776544 34444422 2 2455 5677788888887754422
Q ss_pred CCCCCHHHHHHHHH-HHHHhhhhcccc
Q 006920 362 AEEPDFEAGLQDFK-NRLANYEKVYEP 387 (625)
Q Consensus 362 sd~~d~e~~~~~~~-~rl~~y~~~fEp 387 (625)
+. +++.+++.|. .+-.+|+..-||
T Consensus 154 -g~-~~e~vi~qy~~~vkp~~~~fIep 178 (218)
T COG0572 154 -GR-DLESVIEQYVKTVRPMYEQFIEP 178 (218)
T ss_pred -CC-CHHHHHHHHHHhhChhhhhccCc
Confidence 33 7887777777 344555544443
No 148
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.04 E-value=4e-05 Score=75.11 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=31.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 266 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~ 266 (625)
+|.++|-+||||||+|+.|++..++. +++.|.+.+.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~-----~i~~D~~~~~~ 37 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFP-----VIDADKIAHQV 37 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCe-----EEeCCHHHHHH
Confidence 48899999999999999999987677 89999875543
No 149
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.03 E-value=6.4e-05 Score=73.20 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=31.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 266 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~ 266 (625)
+|.++|.|||||||+|+.|++ ++.. +++.|.+-+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~-----~i~~D~~~~~~ 36 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIP-----VIDADKIAHEV 36 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCC-----EEecCHHHHhh
Confidence 488999999999999999998 7777 89999875544
No 150
>PLN02842 nucleotide kinase
Probab=98.03 E-value=6.4e-05 Score=83.92 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=82.5
Q ss_pred EEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCCCcccCCCCHHHHHHHH----------HHHHHHH
Q 006920 227 VLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN----------EVAALAM 295 (625)
Q Consensus 227 vl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~~~f~~~~~~~~~~~~~----------~va~~~l 295 (625)
+++|.|||||||+|+.|+++++.. +++.+++ |....+-+ +.+.+..+ .....++
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~-----hIs~gdLLR~ev~~~T----------~iG~~Ire~l~~G~lvPdeiv~~ll 65 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLV-----HISTGDLLRAEVSAGT----------DIGKRAKEFMNSGRLVPDEIVIAMV 65 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCC-----EEEccHHHHHHhccCC----------HHHHHHHHHHhCCCCCcHHHHHHHH
Confidence 478999999999999999999887 8886654 44322110 00100000 1111111
Q ss_pred HHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCC-eEEEEEEecChHHHHHHHHHhhhcc----------CC-----
Q 006920 296 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNC-KIIFLETICNDRDIIERNIRLKIQQ----------SP----- 359 (625)
Q Consensus 296 ~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~-~vvfle~~~~~e~i~~R~i~rr~~~----------~p----- 359 (625)
.+.+..........|+|+...+..+ +..+.+.+. +-++|.+.|+++.+++|...|+... .|
T Consensus 66 ~drl~~~~~~~~G~ILDGfPRt~~Q---a~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~ 142 (505)
T PLN02842 66 TGRLSREDAKEKGWLLDGYPRSFAQ---AQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEE 142 (505)
T ss_pred HHHHhCccccCCcEEEeCCCCcHHH---HHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccc
Confidence 1111111101122577974444333 333322222 2345556889988888876654320 00
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHhhhhccccCCCC--CeeEEeec
Q 006920 360 ---DYAEEPDFEAGLQDFKNRLANYEKVYEPVDEG--SYIKMIDM 399 (625)
Q Consensus 360 ---d~sd~~d~e~~~~~~~~rl~~y~~~fEp~~e~--~~i~~id~ 399 (625)
.... ..++..+.+.+|+..|.+..+|+-.. ..++.||.
T Consensus 143 ~~~rL~~--R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~rl~~IDA 185 (505)
T PLN02842 143 IKARLIT--RPDDTEEKVKARLQIYKKNAEAILSTYSDIMVKIDG 185 (505)
T ss_pred ccccccc--CCCCCHHHHHHHHHHHHHHhhhHHHhcCcEEEEEEC
Confidence 0000 23445678899999999988886543 44556675
No 151
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.99 E-value=0.00011 Score=72.68 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=32.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 266 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~ 266 (625)
.+|.++|.+||||||+++.|++ ++.. +++.|.+-+..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~-----~i~~D~~~~~~ 39 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAP-----VIDADAIAHEV 39 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCE-----EEEecHHHHHH
Confidence 5799999999999999999998 7777 89999875544
No 152
>PTZ00301 uridine kinase; Provisional
Probab=97.97 E-value=0.0001 Score=73.82 Aligned_cols=157 Identities=15% Similarity=0.173 Sum_probs=81.6
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcc-cCCc-ceEEechHHHHHHcCCCCC-CcccCCCCHHHH--HHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHD-TKHFNVGKYRRLKHGVNQS-ADFFRADNPEGM--EARNEVAALAME 296 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~-~g~~-~~~~~~D~~Rk~~~g~~~~-~~f~~~~~~~~~--~~~~~va~~~l~ 296 (625)
+.+||-+.|-|||||||+|+.|++.+.. .|.. +.++..|.|=+....+... .....-+.+.++ ....+....+..
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~ 81 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKS 81 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHc
Confidence 3479999999999999999999988742 2333 3367777653211111111 011111223332 222222222221
Q ss_pred H-HHH-----HH----------HcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCC
Q 006920 297 D-MIS-----WM----------HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPD 360 (625)
Q Consensus 297 ~-~~~-----~l----------~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd 360 (625)
. ... +. -....++|+++..... ...++++. +. .+|| .|+.+.++.|+++|-...
T Consensus 82 g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~--~~~l~~l~--D~-~ifv--d~~~d~~~~Rr~~Rd~~~--- 151 (210)
T PTZ00301 82 GKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFT--NAELRNEM--DC-LIFV--DTPLDICLIRRAKRDMRE--- 151 (210)
T ss_pred CCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhC--CHHHHHhC--CE-EEEE--eCChhHHHHHHHhhhHHh---
Confidence 0 000 00 0123577888887731 12333332 22 2455 678888899888875432
Q ss_pred CCCCCCHHHHHHHHHHH-HHhhhhccccCCC
Q 006920 361 YAEEPDFEAGLQDFKNR-LANYEKVYEPVDE 390 (625)
Q Consensus 361 ~sd~~d~e~~~~~~~~r-l~~y~~~fEp~~e 390 (625)
.+. +.+.+.+.|.+. ...+...-+|...
T Consensus 152 -rG~-~~e~v~~~~~~~v~~~~~~~I~p~k~ 180 (210)
T PTZ00301 152 -RGR-TFESVIEQYEATVRPMYYAYVEPSKV 180 (210)
T ss_pred -cCC-CHHHHHHHHHHhhcccHHHHcCcccc
Confidence 233 678787777775 3444444444433
No 153
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.96 E-value=3.8e-05 Score=79.15 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=36.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
+|.++|.|||||||++++|++.|+..|.++.+++.|.|.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 5889999999999999999999988888888999998765
No 154
>PLN02924 thymidylate kinase
Probab=97.95 E-value=0.00018 Score=72.69 Aligned_cols=39 Identities=38% Similarity=0.529 Sum_probs=34.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEe
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 258 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~ 258 (625)
.+.+.+|++.|..||||||+++.|+++|...|.++..++
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ 51 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWR 51 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeee
Confidence 456789999999999999999999999998888876653
No 155
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.94 E-value=0.00011 Score=72.11 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=23.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+|++.|.+||||||+++.|++++++.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~ 26 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYE 26 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 48999999999999999999987654
No 156
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.94 E-value=0.00027 Score=70.40 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=32.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
+.++.+|.++|.+||||||+++.|+..++. ..+.+++.|.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 456789999999999999999999998864 23446666654
No 157
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.93 E-value=5.5e-05 Score=74.42 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=28.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
+|.++|.|||||||+|+.|++.++ .+.+++.|++
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf 34 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDDF 34 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccccc
Confidence 588999999999999999999984 1337777765
No 158
>PRK10867 signal recognition particle protein; Provisional
Probab=97.92 E-value=7.8e-05 Score=82.28 Aligned_cols=44 Identities=34% Similarity=0.458 Sum_probs=39.4
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc-CCcceEEechHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYRR 264 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~-g~~~~~~~~D~~Rk 264 (625)
.+|.+|+|+|++||||||++..||.++... |.++-+++.|.+|-
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 458999999999999999999999998776 88899999997764
No 159
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.0002 Score=72.46 Aligned_cols=138 Identities=16% Similarity=0.177 Sum_probs=82.6
Q ss_pred HHHHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCC--------------
Q 006920 208 AAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-------------- 273 (625)
Q Consensus 208 ~~~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~-------------- 273 (625)
.+-|.+... ++..|.+|++.|.||.||||+|..||.+|+-.. ++++|.+|+.+.+.-..+
T Consensus 76 rY~lwR~ir--~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~----visTD~IREvlR~ii~~~l~PtLh~Ssy~Awk 149 (299)
T COG2074 76 RYLLWRRIR--KMKRPLIILIGGASGVGKSTIAGELARRLGIRS----VISTDSIREVLRKIISPELLPTLHTSSYDAWK 149 (299)
T ss_pred HHHHHHHHh--ccCCCeEEEecCCCCCChhHHHHHHHHHcCCce----eecchHHHHHHHHhCCHHhcchhhHhHHHHHH
Confidence 344445444 688899999999999999999999999998552 789999998776532210
Q ss_pred ccc--CCCC--HHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHH
Q 006920 274 DFF--RADN--PEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 349 (625)
Q Consensus 274 ~f~--~~~~--~~~~~~~~~va~~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R 349 (625)
.+. ...+ -.+++.......--.+..+.-..+.|..+|+.++..-+..-+.-. . +..++...+...+++.+++
T Consensus 150 alr~~~~~~piiaGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~--~--~~n~~~~~l~i~dee~Hr~ 225 (299)
T COG2074 150 ALRDPTDENPIIAGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEA--L--GNNVFMFMLYIADEELHRE 225 (299)
T ss_pred HhcCCCCCcchhhhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhh--h--ccceEEEEEEeCCHHHHHH
Confidence 000 1111 122333323333333333333333667779999888776322211 1 2223333446678888877
Q ss_pred HHHhhh
Q 006920 350 NIRLKI 355 (625)
Q Consensus 350 ~i~rr~ 355 (625)
+.-.|.
T Consensus 226 RF~~R~ 231 (299)
T COG2074 226 RFYDRI 231 (299)
T ss_pred HHHHHH
Confidence 776554
No 160
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.87 E-value=0.00023 Score=73.83 Aligned_cols=126 Identities=13% Similarity=0.146 Sum_probs=71.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 303 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~ 303 (625)
.+|+++||+||||||..+.|. .+++. ..|.+= . ....+.+..+... --.
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lE-D~Gy~-------cvDNlP-----------------~---~Ll~~l~~~~~~~---~~~ 50 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALE-DLGYY-------CVDNLP-----------------P---SLLPQLIELLAQS---NSK 50 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHH-hcCee-------EEcCCc-----------------H---HHHHHHHHHHHhc---CCC
Confidence 379999999999999998885 45544 334321 0 1122222222210 000
Q ss_pred cCCcEEEEecCCCcH--HHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 006920 304 EGGQVGIFDATNSSR--KRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 381 (625)
Q Consensus 304 ~~g~vvIvDatn~~~--~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~y 381 (625)
...-.+++|.-+..- ..-+.+.++.+.++.+.+|.+.|+++++++|..+.|. ..|...+. ...++.+.-.+.++-.
T Consensus 51 ~~~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR-~HPL~~~~-~~le~I~~Er~~L~~l 128 (284)
T PF03668_consen 51 IEKVAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRR-RHPLSSDG-SLLEAIEKERELLEPL 128 (284)
T ss_pred CceEEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccC-CCCCCCCC-CcHHHHHHHHHHHHHH
Confidence 123456888887652 3334455555556666666667899999999887653 35655444 3334444444444433
Q ss_pred h
Q 006920 382 E 382 (625)
Q Consensus 382 ~ 382 (625)
+
T Consensus 129 r 129 (284)
T PF03668_consen 129 R 129 (284)
T ss_pred H
Confidence 3
No 161
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.84 E-value=6.3e-05 Score=83.17 Aligned_cols=44 Identities=41% Similarity=0.555 Sum_probs=39.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
.+|.+|+|+|++|+||||++..||.++...|.++-+++.|.+|-
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 46899999999999999999999999988888898999987654
No 162
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.84 E-value=0.00021 Score=71.87 Aligned_cols=26 Identities=31% Similarity=0.211 Sum_probs=23.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+|++-|.-||||||+++.|+++|++.
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~ 26 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMK 26 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 58899999999999999999999764
No 163
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.84 E-value=0.00027 Score=71.16 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=30.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
+++|.+.|.+||||||+|+.|+++++.. +++.|.+
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~-----~~~~g~~ 36 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYA-----YLDSGAM 36 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCc-----eeeCchH
Confidence 3689999999999999999999999987 7777754
No 164
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.83 E-value=2.6e-05 Score=87.49 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=34.2
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRR 264 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk 264 (625)
.++.+|.+.|.+||||||+|+.|+++|++. +++.|. ||.
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~-----~~d~g~~YR~ 321 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLL-----YLDTGAMYRA 321 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCe-----EecCCceehH
Confidence 467899999999999999999999999987 888775 555
No 165
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.82 E-value=0.00026 Score=70.60 Aligned_cols=41 Identities=20% Similarity=0.080 Sum_probs=35.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 266 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~ 266 (625)
..|++|.++|.+||||||+++.|++.++.. +++.|.+-+.+
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~-----vidaD~i~~~l 44 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLN-----VVCADTISREI 44 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCe-----EEeccHHHHHH
Confidence 347899999999999999999999988887 88888765544
No 166
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.81 E-value=0.00033 Score=69.05 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=30.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
+|.++|.+||||||+|+.|+..+ .+..+.+++.|++-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 57899999999999999999988 34456688888754
No 167
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.81 E-value=0.00012 Score=73.11 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=33.2
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 266 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~ 266 (625)
+.+++|.++|-+||||||+++.|.+ +++. ++|.|.+-+.+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~-----v~d~D~i~~~~ 42 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCE-----LFEADRVAKEL 42 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCe-----EEeccHHHHHH
Confidence 4568999999999999999999996 7777 88888665444
No 168
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.81 E-value=0.00029 Score=66.47 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=78.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHc--ccCCcceEEechHHHHHHcC--CCCCCcc-c----CCCCHHHH----HH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRRLKHG--VNQSADF-F----RADNPEGM----EA 286 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~--~~g~~~~~~~~D~~Rk~~~g--~~~~~~f-~----~~~~~~~~----~~ 286 (625)
..+..||+|-|.|.+|||++|.+++.-.. |. ++-.|.+=+.+.- ......| + ..+..+.+ .-
T Consensus 20 ~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwm-----higiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gp 94 (205)
T COG3896 20 MPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWM-----HIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGP 94 (205)
T ss_pred CCCceEEEecCCCccchhHHHHHHHHHhhcchh-----hhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechh
Confidence 55678999999999999999999998763 77 5666655332211 0111111 0 11112111 11
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEecCCCcHH-HHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 287 RNEVAALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 287 ~~~va~~~l~~~~~~l~~~g~vvIvDatn~~~~-~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
..+.+..-...++..+...|..+|.|+....++ .-+-++- -.+++|.++-+.||++++.+|..++
T Consensus 95 i~e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~--l~g~~v~~VGV~~p~E~~~~Re~rr 160 (205)
T COG3896 95 ILELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRV--LEGCRVWMVGVHVPDEEGARRELRR 160 (205)
T ss_pred HHHHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHH--HhCCceEEEEeeccHHHHHHHHhhc
Confidence 222222233445556667788889999988754 3333332 2378999999999999999888764
No 169
>PLN02165 adenylate isopentenyltransferase
Probab=97.81 E-value=0.00018 Score=76.55 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=32.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
..++.+|+++|.+||||||+|..||+.+++. +++.|.+
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~~e-----IIsaDs~ 77 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFPSE-----IINSDKM 77 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcCCc-----eecCChh
Confidence 4455689999999999999999999999877 7787765
No 170
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.80 E-value=0.00036 Score=70.66 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=34.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceE-EechH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH-FNVGK 261 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~-~~~D~ 261 (625)
..++.+|.++|.+||||||+++.|+..+...+....+ ++.|+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~ 72 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDG 72 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccc
Confidence 4679999999999999999999999999876555444 55554
No 171
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=97.79 E-value=3.1e-05 Score=82.10 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=69.0
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
...+.+|+++|+|||||||+++..-..-++. +.+.|.+ |. . ..|+....
T Consensus 266 ~~~~eiV~~vgfp~sGks~f~a~~~~~~~y~-----~vn~d~l-----g~-----------~----------~~C~~~~~ 314 (422)
T KOG2134|consen 266 DGHGEIVVAVGFPGSGKSTFAAKRVVPNGYK-----IVNADTL-----GT-----------P----------QNCLLANA 314 (422)
T ss_pred CCCCcEEEEEecCCCCcchhhhhhcccCcee-----EeecccC-----CC-----------c----------hhhHHHHH
Confidence 4555899999999999999988776555555 5555433 10 1 12444444
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHH
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDII 347 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~ 347 (625)
+.+.. +..||+|.|++..+.|+.+... .+.++++-+++..|+.+...
T Consensus 315 e~l~~-~~sVvidnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~eq~~ 362 (422)
T KOG2134|consen 315 EALKH-GKSVVIDNTNPDAESRKYYLDCATEREIPIRCFEMNSSVEQAQ 362 (422)
T ss_pred HHhhc-ccEEeeCCCCcchHHHHHHhhhHHHhCccceeeeeccHHHhhh
Confidence 45554 4555889999999999999999 77888888888888865443
No 172
>PRK07429 phosphoribulokinase; Provisional
Probab=97.78 E-value=0.001 Score=71.10 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=79.5
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH----HH--HcCCCCCCcccCCCCHHHHHHHHHHHH
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR----RL--KHGVNQSADFFRADNPEGMEARNEVAA 292 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R----k~--~~g~~~~~~f~~~~~~~~~~~~~~va~ 292 (625)
...+|.+|-++|-+||||||+++.|++.++..+ +.+++.|++- +. ..|... +.. ....+....+...
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~--~~vi~~Dd~~~~~~~~r~~~g~~~---l~p--~~~~~d~l~~~l~ 76 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEEL--VTVICTDDYHSYDRKQRKELGITA---LDP--RANNLDIMYEHLK 76 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCc--eEEEEecccccCCHHHHHhcCCcc---cCc--cchHHHHHHHHHH
Confidence 356889999999999999999999999987432 2255566541 11 112111 111 1111222222222
Q ss_pred HHHHHHHHH----H------------HcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhc
Q 006920 293 LAMEDMISW----M------------HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 356 (625)
Q Consensus 293 ~~l~~~~~~----l------------~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~ 356 (625)
.+.. .... . .....++|+++..+.-. ..++.+.. ..+|| .++.+..+.|+++|...
T Consensus 77 ~L~~-g~~I~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l~~--~~lr~~~D---~~I~V--da~~evr~~Rri~Rd~~ 148 (327)
T PRK07429 77 ALKT-GQPILKPIYNHETGTFDPPEYIEPNKIVVVEGLHPLYD--ERVRELYD---FKVYL--DPPEEVKIAWKIKRDMA 148 (327)
T ss_pred HHHC-CCceecceeecCCCCcCCcEecCCCcEEEEechhhcCc--HhHHhhCC---EEEEE--ECCHHHHHHHHHHHHHh
Confidence 1111 0000 0 01134678888653211 12222211 23454 67888887777766433
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhhhccccCCC
Q 006920 357 QSPDYAEEPDFEAGLQDFKNRLANYEKVYEPVDE 390 (625)
Q Consensus 357 ~~pd~sd~~d~e~~~~~~~~rl~~y~~~fEp~~e 390 (625)
.+ +. +.+++.+.+..+...+....+|.-.
T Consensus 149 rr----G~-s~eei~~~i~~r~pd~~~yI~P~k~ 177 (327)
T PRK07429 149 KR----GH-TYEQVLAEIEAREPDFEAYIRPQRQ 177 (327)
T ss_pred hc----CC-CHHHHHHHHHHhCccHhhhhccccc
Confidence 21 22 6677777777777766665565433
No 173
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.78 E-value=0.00031 Score=69.86 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=32.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
.++|-++|.+||||||+|+.+++ ++.. +++.|++-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~-----vidaD~v~r 37 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFP-----VIDADDVAR 37 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCe-----EEEccHHHH
Confidence 46899999999999999999999 8888 999997544
No 174
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=97.75 E-value=0.0004 Score=68.99 Aligned_cols=36 Identities=28% Similarity=0.252 Sum_probs=30.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 265 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~ 265 (625)
.+|.++|-+||||||+++.|+. ++.. +++.|.+-+.
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~-----vid~D~i~~~ 37 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFL-----IVDADQVARD 37 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCe-----EEeCcHHHHH
Confidence 3799999999999999999987 6776 8999976443
No 175
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.75 E-value=0.00034 Score=66.33 Aligned_cols=148 Identities=11% Similarity=0.116 Sum_probs=93.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 302 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l 302 (625)
|.+.+|.|..||||||+-..+...+. ....++|.|.+-.. +++.. .+... -+.++.+...+ ..+
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~---~~~~~VN~D~iA~~---i~p~~-----p~~~~----i~A~r~ai~~i-~~~ 65 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLL---PGIVFVNADEIAAQ---ISPDN-----PTSAA----IQAARVAIDRI-ARL 65 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhc---CCeEEECHHHHhhh---cCCCC-----chHHH----HHHHHHHHHHH-HHH
Confidence 56889999999999999665544332 13457899877432 22221 11111 12233333322 233
Q ss_pred HcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHhhh
Q 006920 303 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 382 (625)
Q Consensus 303 ~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~y~ 382 (625)
...|...+...|...+..++.++..+..|+-++..++..+..++-.+|++.|....... . .-+.+.+.|.++++...
T Consensus 66 I~~~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~--I-pED~Ir~RY~rsle~l~ 142 (187)
T COG4185 66 IDLGRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHD--I-PEDKIRRRYRRSLELLA 142 (187)
T ss_pred HHcCCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCC--C-cHHHHHHHHHHHHHHHH
Confidence 34566668899999999999999998889887777777777777777776665533321 1 23457788888888777
Q ss_pred hccccCC
Q 006920 383 KVYEPVD 389 (625)
Q Consensus 383 ~~fEp~~ 389 (625)
..++-.+
T Consensus 143 ~~l~l~d 149 (187)
T COG4185 143 QALTLAD 149 (187)
T ss_pred HHHhhcc
Confidence 6666443
No 176
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.75 E-value=0.0004 Score=70.32 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=31.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+.+|.+.|.|||||||+|+.|+++++.. +++.|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~-----~~~~~~ 37 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFH-----YLDTGA 37 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCC-----cccCch
Confidence 5789999999999999999999999988 777776
No 177
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.73 E-value=0.00025 Score=78.35 Aligned_cols=44 Identities=34% Similarity=0.472 Sum_probs=38.7
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc-ccCCcceEEechHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR 264 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~-~~g~~~~~~~~D~~Rk 264 (625)
.+|.+|+++|++|+||||+|..||.++. ..|.++-+++.|.+|-
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 4689999999999999999999999985 4688888999997764
No 178
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.73 E-value=0.00044 Score=68.58 Aligned_cols=41 Identities=37% Similarity=0.447 Sum_probs=35.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
|.+|+|+|.+|+||||.+.+||.++...+.++-+++.|.+|
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 68999999999999999999999998668888899998775
No 179
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.69 E-value=0.00027 Score=69.12 Aligned_cols=116 Identities=15% Similarity=0.235 Sum_probs=66.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCC----------CcccCCC--------------
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS----------ADFFRAD-------------- 279 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~----------~~f~~~~-------------- 279 (625)
++|-++|-.||||||+++.|++ ++.. ++|.|.+-+.+...+.. ..++..+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~-----vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~ 74 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFP-----VIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFS 74 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-E-----EEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTT
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCC-----EECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhc
Confidence 5799999999999999999998 8888 99999876655432211 1111111
Q ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHcC--CcEEEEecCCCcHHHHHHHHHHHcCCCe-EEEEEEecChHHHHHHHHHhh
Q 006920 280 NPEGMEARNEVAALAM-EDMISWMHEG--GQVGIFDATNSSRKRRNMLMKMAEGNCK-IIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 280 ~~~~~~~~~~va~~~l-~~~~~~l~~~--g~vvIvDatn~~~~~R~~~~~l~~~~~~-vvfle~~~~~e~i~~R~i~rr 354 (625)
+++..+.++.+..-.. +.+..++... ..++|+|+.-+... .+ ..-+. +++| .|+.+..++|.++|+
T Consensus 75 d~~~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~------~~-~~~~D~vi~V--~a~~e~ri~Rl~~R~ 144 (180)
T PF01121_consen 75 DPEKLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFES------GL-EKLCDEVIVV--YAPEEIRIKRLMERD 144 (180)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTT------TG-GGGSSEEEEE--E--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhh------hH-hhhhceEEEE--ECCHHHHHHHHHhhC
Confidence 1222334444444333 2333444433 26778888776532 11 11233 4444 678888888888875
No 180
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.66 E-value=0.00075 Score=65.78 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=23.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
+.+|+|+|.+||||||+++.|.+.++
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 45799999999999999999999875
No 181
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=97.65 E-value=0.00077 Score=69.05 Aligned_cols=38 Identities=21% Similarity=0.048 Sum_probs=33.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 266 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~ 266 (625)
++|.++|-.||||||+++.|.+.++.. ++|.|.+-+.+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~-----viDaD~iar~l 39 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIE-----VIDADLVVREL 39 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCe-----EEehHHHHHHH
Confidence 479999999999999999999988888 89999874443
No 182
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=97.59 E-value=0.00032 Score=68.23 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=79.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCc-ceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHH---
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHD-TKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS--- 300 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~-~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~--- 300 (625)
++.++|+|++||||+++.|.-.-..+.++ ..++.-|+++- ...++.+ ..-.+.....+.....|.....+
T Consensus 3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlm---daTpSaD---~a~keqRgr~~~~iEk~ISaiqedtd 76 (291)
T KOG4622|consen 3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLM---DATPSAD---KAAKEQRGRFECHIEKCISAIQEDTD 76 (291)
T ss_pred eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhh---hcCcchh---hhHHHHhchHHHHHHHHHHHHhcccC
Confidence 68899999999999999986554333211 12445555541 1111110 11112223334555555543331
Q ss_pred ------------HHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 301 ------------WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 301 ------------~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
-++.|..+.++|..|..+..|-.+.++ ..+|+.+=.|++...-.+++++|..|
T Consensus 77 wppqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~R 142 (291)
T KOG4622|consen 77 WPPQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHR 142 (291)
T ss_pred CCchheeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhcccc
Confidence 123455677899999999999999999 88999887777777888899888766
No 183
>PLN02422 dephospho-CoA kinase
Probab=97.59 E-value=0.00084 Score=68.25 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=29.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
+|.++|-+||||||+++.|+ .++.. ++|.|.+-+
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~-----~idaD~~~~ 36 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIP-----VVDADKVAR 36 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCe-----EEehhHHHH
Confidence 69999999999999999998 56777 899997644
No 184
>PRK09169 hypothetical protein; Validated
Probab=97.59 E-value=0.00025 Score=88.77 Aligned_cols=137 Identities=12% Similarity=-0.064 Sum_probs=84.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 303 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~ 303 (625)
.-|+|+|++|+|||||++.|++.|++. ++|+|.......|..+...|- ..+ .++.. ....+.++ +
T Consensus 2111 ~aIvLIG~MGaGKTTIGr~LA~~Lg~~-----FiDtD~kIeks~GrkI~rIFa-~eG--~FRe~---Eaa~V~Dl---l- 2175 (2316)
T PRK09169 2111 QARRIEREVGPLLQALLQKLAGGLRVD-----KPHSVRKIAKKIGKKIARIQA-LRG--LSPEQ---AAARVRDA---L- 2175 (2316)
T ss_pred cccceeeCCCCCHhHHHHHHHHHhCCC-----ccccHHHHHHHhCCCHHHHHH-hcC--chHHH---HHHHHHHH---h-
Confidence 469999999999999999999999999 899998888788877764442 222 22211 11122211 1
Q ss_pred cCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCH--------HHHHHHHH
Q 006920 304 EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF--------EAGLQDFK 375 (625)
Q Consensus 304 ~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~--------e~~~~~~~ 375 (625)
. ..+|+..-.......+....+.++|+ +||+ ..+.+.+.+| +... .++|...+. ++ .+..+.+.
T Consensus 2176 r--~~vVLSTGGGav~~~enr~~L~~~Gl-vV~L--~an~~tl~~R-ty~g-~NRPLL~~~-~~~FEiQFHT~esl~Lk~ 2247 (2316)
T PRK09169 2176 R--WEVVLPAEGFGAAVEQARQALGAKGL-RVMR--INNGFAAPDT-TYAG-LNVNLRTAA-GLDFEIQFHTADSLRTKN 2247 (2316)
T ss_pred c--CCeEEeCCCCcccCHHHHHHHHHCCE-EEEE--ECCHHHHHHH-hccC-CCCccccCC-CCccchhccHHHHHHHHH
Confidence 1 24466444443333334443466665 5555 3455554544 4432 356776655 54 66777888
Q ss_pred HHHHhhhh
Q 006920 376 NRLANYEK 383 (625)
Q Consensus 376 ~rl~~y~~ 383 (625)
+|-..|++
T Consensus 2248 eRhpLYEq 2255 (2316)
T PRK09169 2248 KTHKLYEK 2255 (2316)
T ss_pred HhHHHHHH
Confidence 88888866
No 185
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.56 E-value=0.0045 Score=60.28 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.7
Q ss_pred EccCCCCHHHHHHHHHHHHcccCCcc
Q 006920 229 VGLPARGKTFTAAKLTRYLRWLGHDT 254 (625)
Q Consensus 229 ~GLPGSGKSTlAr~La~~L~~~g~~~ 254 (625)
=|+.||||||+++.|+++|...|+++
T Consensus 2 EGiDGsGKtT~~~~L~~~l~~~~~~~ 27 (186)
T PF02223_consen 2 EGIDGSGKTTQIRLLAEALKEKGYKV 27 (186)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTTEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCcc
Confidence 49999999999999999999888773
No 186
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.56 E-value=0.0027 Score=63.27 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=32.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRR 264 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk 264 (625)
++|.+=|.+||||||+|+.||++|++. ++|++. ||-
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~-----yldTGamYRa 41 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFH-----YLDTGAMYRA 41 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCC-----eecccHHHHH
Confidence 688889999999999999999999999 899885 665
No 187
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.55 E-value=0.00083 Score=65.62 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
+.+|+++|.|||||+|+++.|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3579999999999999999999885
No 188
>PRK05439 pantothenate kinase; Provisional
Probab=97.54 E-value=0.00039 Score=73.62 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=37.7
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcc--cCCcceEEechHH
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 262 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~--~g~~~~~~~~D~~ 262 (625)
..+.|.+|.++|-|||||||+|+.|+..|+. .+.++.++..|.+
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 3578999999999999999999999998864 3567888888875
No 189
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0014 Score=69.93 Aligned_cols=103 Identities=20% Similarity=0.289 Sum_probs=65.2
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcC------CCCCCcccCCCCHHHHHHHHHHHH
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG------VNQSADFFRADNPEGMEARNEVAA 292 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g------~~~~~~f~~~~~~~~~~~~~~va~ 292 (625)
...+|-||+++||-|+||||.+-+||.++...|.++-++..|.+|---+. ....-.|+....+.. -.+++.
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~d---pv~ia~ 173 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEAD---PVKIAS 173 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccc---hHHHHH
Confidence 46789999999999999999999999999999988888888877642110 011112222211110 112222
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHH
Q 006920 293 LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM 327 (625)
Q Consensus 293 ~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l 327 (625)
+ -...+-+++-.++|+|.+...+..-..+.++
T Consensus 174 e---gv~~fKke~fdvIIvDTSGRh~qe~sLfeEM 205 (483)
T KOG0780|consen 174 E---GVDRFKKENFDVIIVDTSGRHKQEASLFEEM 205 (483)
T ss_pred H---HHHHHHhcCCcEEEEeCCCchhhhHHHHHHH
Confidence 2 2224445667777887777666665555555
No 190
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.53 E-value=0.011 Score=59.26 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=32.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEE
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 257 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~ 257 (625)
++++|++=|.=||||||.++.|+++|...|.++.+.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t 37 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT 37 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 468999999999999999999999999888777655
No 191
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=97.52 E-value=0.0025 Score=62.67 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=71.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCC--------------------------CcccC
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--------------------------ADFFR 277 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~--------------------------~~f~~ 277 (625)
.+|-++|-.||||||+++.+. .++.. ++|.|.+-+.....+.+ ..+|.
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~-----vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~ 75 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIP-----VIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFS 75 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCc-----EecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhC
Confidence 467899999999999999997 78888 89999764433221111 01122
Q ss_pred CCCHHH-H--HHHHHHHHHHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 278 ADNPEG-M--EARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 278 ~~~~~~-~--~~~~~va~~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
...... . ...-.+..+++.++..++..|..++|+|..-+... .+ .+.=..++. +.|+.+.-++|.++|
T Consensus 76 ~~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~---~~---~~~~~~tvv--V~cd~~~Ql~Rl~~R 146 (225)
T KOG3220|consen 76 DPKKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA---KL---LKICHKTVV--VTCDEELQLERLVER 146 (225)
T ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH---hH---HhheeeEEE--EEECcHHHHHHHHHh
Confidence 211111 0 11134556677777778888999999998544322 01 121123333 478888888888876
No 192
>PRK07933 thymidylate kinase; Validated
Probab=97.51 E-value=0.0066 Score=60.94 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=30.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEE
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 257 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~ 257 (625)
++|++.|.-||||||+++.|+++|...|.++.++
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~ 34 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL 34 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4799999999999999999999999888777655
No 193
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.51 E-value=0.0009 Score=62.79 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=31.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 265 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~ 265 (625)
=|+++|=||+||||+|.+||+.++.. +++..++.+.
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~-----~i~isd~vkE 44 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLE-----YIEISDLVKE 44 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCc-----eEehhhHHhh
Confidence 38899999999999999999999988 8887776654
No 194
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.51 E-value=0.00063 Score=70.90 Aligned_cols=44 Identities=32% Similarity=0.382 Sum_probs=38.4
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
..++.+|+++|.+|+||||++..||..+...|.++-+++.|.+|
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 35678999999999999999999999998778888889988654
No 195
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.50 E-value=0.00066 Score=76.90 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=32.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
..++.+|.++|.+||||||+|+.|+..++. +-++..|.+.
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp~----vgvIsmDdy~ 101 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFMPS----IAVISMDNYN 101 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhCCC----cEEEEEccee
Confidence 456799999999999999999999988753 3367777764
No 196
>PRK14974 cell division protein FtsY; Provisional
Probab=97.48 E-value=0.0014 Score=70.31 Aligned_cols=45 Identities=33% Similarity=0.436 Sum_probs=38.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
..+|.+|+++|.||+||||++..|+..+...|.++-+++.|.+|.
T Consensus 137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 346899999999999999999999999887788887888886653
No 197
>PRK13974 thymidylate kinase; Provisional
Probab=97.48 E-value=0.0042 Score=62.19 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=26.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccC
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLG 251 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g 251 (625)
+.+|++.|.+||||||.++.|+++|...|
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g 31 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSG 31 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999997554
No 198
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.47 E-value=0.00014 Score=59.52 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=26.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEec
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 259 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~ 259 (625)
+|+++|.|||||||+++.|++.| .+.+..+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 47899999999999999999998 3445556644
No 199
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.44 E-value=0.0023 Score=62.36 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=27.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
||-+.+-.|||++++|++||+.|+.. ++|.+.+.+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~-----~~d~~ii~~ 35 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYP-----YYDREIIEE 35 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT-------EE-HHHHHH
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCc-----cCCHHHHHH
Confidence 68889999999999999999999999 888765554
No 200
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.43 E-value=0.0015 Score=62.46 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=29.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
.+++++++|.||+||||+.+.+.+.+ +...++|-+++
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~~l----~~~~ivNyG~~ 39 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALKEL----VKHKIVNYGDL 39 (189)
T ss_pred CceEEEEEcCCCCChHHHHHHHHHHH----hhceeeeHhHH
Confidence 36899999999999999999999988 22236776654
No 201
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.42 E-value=0.0027 Score=61.01 Aligned_cols=39 Identities=46% Similarity=0.602 Sum_probs=34.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
+++++|.||+||||+++.|+..+...|.++.+++.|.+|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 689999999999999999999987778888889988664
No 202
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.41 E-value=0.0014 Score=71.89 Aligned_cols=36 Identities=28% Similarity=0.231 Sum_probs=31.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 266 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~ 266 (625)
.|.++|.+||||||+|+.|++ +++. ++|.|.+-+.+
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~~-----vidaD~i~~~l 38 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGAV-----VVDADVLAREV 38 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCe-----EEehHHHHHHH
Confidence 589999999999999999987 7888 89999876543
No 203
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.41 E-value=0.0014 Score=65.06 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=28.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 266 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~ 266 (625)
+|.++|-+||||||+++.|++ ++.. +++.|.+-+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~-----~i~~D~i~~~~ 36 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAF-----GISADRLAKRY 36 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCE-----EEecchHHHHH
Confidence 478999999999999999975 4555 78888764433
No 204
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.39 E-value=0.002 Score=67.22 Aligned_cols=192 Identities=13% Similarity=0.140 Sum_probs=91.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH------HHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR------LKHGVNQSADFFRADNPEGMEARNEVAALAMEDM 298 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk------~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~ 298 (625)
+|.++|-+||||||+++.|+..++..+ ..++..|++-+ ...|.... ... ...+.........+.+ .
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd~~~~~~~~r~~~g~~~~---~p~--~~~~d~l~~~l~~Lk~-g 72 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDDYHSLDRKGRKETGITAL---DPR--ANNFDLMYEQLKALKE-G 72 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECcccccCCHHHHHHhhcccc---ccc--chhHHHHHHHHHHHHC-C
Confidence 478899999999999999999886443 23566665421 11121111 011 1111111111111110 0
Q ss_pred HHH-----------HH-----cCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCC
Q 006920 299 ISW-----------MH-----EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYA 362 (625)
Q Consensus 299 ~~~-----------l~-----~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~s 362 (625)
... +. ....++|+++..+... ..++.+.. ..+|| .|+.+..++|+++|-...+
T Consensus 73 ~~i~~P~y~~~~~~~~~~~~i~~~~ivIvEG~~~l~~--~~l~~~~D---~~I~v--d~~~e~r~~r~i~Rd~~rr---- 141 (273)
T cd02026 73 QAIEKPIYNHVTGLIDPPELIKPTKIVVIEGLHPLYD--ERVRELLD---FSVYL--DISDEVKFAWKIQRDMAER---- 141 (273)
T ss_pred CCcccccccccCCCcCCcEEcCCCCEEEEeeehhhCc--hhhhhhcc---EEEEE--ECChhHHHHHHHHHHHHHh----
Confidence 000 00 1125678887664211 12222211 23444 6788877676666543322
Q ss_pred CCCCHHHHHHHHHHHHHhhhhccccCCCC-CeeEEeeccCCCCccceecccccCcCCceeeeeeccCCCCccEEEecccc
Q 006920 363 EEPDFEAGLQDFKNRLANYEKVYEPVDEG-SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGE 441 (625)
Q Consensus 363 d~~d~e~~~~~~~~rl~~y~~~fEp~~e~-~~i~~id~~~~~g~~~~~~~~~g~L~~~~~~~l~n~~~~~~~I~LVRHGe 441 (625)
+. +.+++.+.+..+...+.+.-+|.-.. ..++-++- .+...+...+-+ -|+.......|..-..+||-.-|-
T Consensus 142 G~-s~e~v~~~i~~r~~~~~~~I~P~~~~ADvVI~~~p-----~~l~~~~~~~~~-~r~~l~~~~~~~~~~~~~~~~~~~ 214 (273)
T cd02026 142 GH-SLEDVLASIEARKPDFEAYIDPQKQYADVVIQVLP-----TQLIPDDTEGKV-LRVRLIQKEGVKDFVPVYLFDEGS 214 (273)
T ss_pred CC-CHHHHHHHHHhhchhHHHHhccccccCcEEEEccC-----ccCCcccccceE-EEEEEEecCCCCCcCcccccCCCC
Confidence 12 67778888877777777665664443 33332332 122222222222 233333344444455666665554
Q ss_pred c
Q 006920 442 S 442 (625)
Q Consensus 442 s 442 (625)
+
T Consensus 215 ~ 215 (273)
T cd02026 215 T 215 (273)
T ss_pred c
Confidence 4
No 205
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.0013 Score=64.20 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=24.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
++.+|+++|.+|+||||+.++|-+..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 67899999999999999999998876
No 206
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.38 E-value=0.0034 Score=74.07 Aligned_cols=35 Identities=26% Similarity=0.514 Sum_probs=31.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRR 264 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk 264 (625)
+|.+.|.|||||||+|+.||+.|++. +++++. ||.
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~-----~~~~g~~~r~ 38 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYA-----YLDTGAMYRA 38 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EeecCcEeHH
Confidence 68999999999999999999999998 888775 454
No 207
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.36 E-value=0.0042 Score=72.65 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=32.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRR 264 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk 264 (625)
..+|.+.|.+||||||+|+.|+++|++. ++|+|. ||.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~-----~~~~~~~~~~ 479 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYH-----YLDSGALYRL 479 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCe-----EecHHHhhhH
Confidence 4578889999999999999999999999 888886 554
No 208
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.31 E-value=0.003 Score=60.82 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=29.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
++|+++|=||.||||+|+.|+ .+++. +++..++-+
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~-----~i~l~el~~ 35 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYK-----VIELNELAK 35 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCc-----eeeHHHHHH
Confidence 369999999999999999999 88887 776655544
No 209
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.29 E-value=0.0012 Score=66.67 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=30.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc--cCCcceEEechHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 262 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~--~g~~~~~~~~D~~ 262 (625)
+|-++|.+||||||+|+.|+..|.. .+.++.+++.|.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 4678999999999999999999864 3456667777765
No 210
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.28 E-value=0.00077 Score=62.84 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
+|+++|.+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999999864
No 211
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.0026 Score=63.21 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=25.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..+|++.|+=|+||||+|+.||++|+..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~ 31 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK 31 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc
Confidence 4689999999999999999999999854
No 212
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.24 E-value=0.0014 Score=69.77 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=38.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
.+|.+|+++|.+|+||||++..||..+...|.++-+++.|.+|
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 4678999999999999999999999998778888888888654
No 213
>PRK13976 thymidylate kinase; Provisional
Probab=97.22 E-value=0.0077 Score=60.36 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=27.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc-C-CcceEE
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWL-G-HDTKHF 257 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~-g-~~~~~~ 257 (625)
++|++-|.-||||||+++.|+++|... | .++...
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~ 36 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT 36 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe
Confidence 479999999999999999999999864 4 344433
No 214
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.20 E-value=0.00089 Score=68.52 Aligned_cols=52 Identities=23% Similarity=0.257 Sum_probs=44.4
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech-HHHHHHcCCC
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG-KYRRLKHGVN 270 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D-~~Rk~~~g~~ 270 (625)
..++|.+|+++|+-||||||+.++|..++....-+.+++|.| .+++.-.+.+
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~an 67 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPAN 67 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccC
Confidence 467899999999999999999999999999888889999999 5666544433
No 215
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.19 E-value=0.001 Score=60.10 Aligned_cols=34 Identities=32% Similarity=0.452 Sum_probs=26.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
|++.|.||+||||+++.|+++++.. ...++....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~---~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP---FIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE---EEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc---ccccccccc
Confidence 6899999999999999999998644 334555443
No 216
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.16 E-value=0.0063 Score=64.34 Aligned_cols=91 Identities=22% Similarity=0.349 Sum_probs=63.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
..+|.+|+++|..|+||||...+||.+|...|.++.+-..|.+|- . +.+++.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA-----------------a-----------AiEQL~ 187 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA-----------------A-----------AIEQLE 187 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHH-----------------H-----------HHHHHH
Confidence 467999999999999999999999999999999998888887763 1 233333
Q ss_pred HHHHcCCcEEEEecCCCcHH--HHHHHHHHHcCCCeEEEEE
Q 006920 300 SWMHEGGQVGIFDATNSSRK--RRNMLMKMAEGNCKIIFLE 338 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~--~R~~~~~l~~~~~~vvfle 338 (625)
.|-.+-|..+|--..+..+. -.+.+......++.++++.
T Consensus 188 ~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliD 228 (340)
T COG0552 188 VWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLID 228 (340)
T ss_pred HHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 44444455534422333333 3444444456688888875
No 217
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.13 E-value=0.0018 Score=68.65 Aligned_cols=35 Identities=31% Similarity=0.328 Sum_probs=31.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.+.+|+++|.+||||||+|..|++.++.. +++.|.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~-----iis~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGE-----IISADS 37 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCc-----EEeccc
Confidence 45799999999999999999999999877 788776
No 218
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=97.10 E-value=0.00075 Score=68.59 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=47.8
Q ss_pred cEEEeccccccCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCC--------CCEEEEcCcHHHHHHHHHh
Q 006920 433 PILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSER--------AASIWTSTLQRTILTASPI 498 (625)
Q Consensus 433 ~I~LVRHGes~~n~~~~~~gD~pLTe~G~~QA~~l~~~L~~~l~~~~--------~~~I~sSpl~Ra~qTA~~i 498 (625)
-.+++|||+..- ..||..|++|+..+|++|++++.+.. .-.+++|+..||++||+.+
T Consensus 5 v~~~~RHg~r~p---------~~LT~~G~~q~~~~G~~lr~~y~~~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~ 69 (242)
T cd07061 5 VQVLSRHGDRYP---------GELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYIRSSDSQRTLQSAQAF 69 (242)
T ss_pred EEEEEecCCCCc---------hhhhHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEEECCCcHHHHHHHHH
Confidence 467889999852 56999999999999999998764322 3378999999999999999
No 219
>PLN02840 tRNA dimethylallyltransferase
Probab=97.07 E-value=0.0019 Score=70.95 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=31.8
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+..++.+|+++|.+||||||+|..|++.++.. +++.|.
T Consensus 17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~-----iis~Ds 54 (421)
T PLN02840 17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGE-----IISADS 54 (421)
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHCCCC-----eEeccc
Confidence 35566799999999999999999999999876 666653
No 220
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.01 E-value=0.0023 Score=68.41 Aligned_cols=51 Identities=25% Similarity=0.302 Sum_probs=41.1
Q ss_pred HHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 210 AVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 210 ~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.+.....+ ...++.+|.++|.|||||||+...|...+...|.++-++..|.
T Consensus 44 ~l~~~~~~-~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 44 ELLDALLP-HTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred HHHHHHhh-cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 44444432 3567899999999999999999999999987788888887763
No 221
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=96.94 E-value=0.012 Score=60.16 Aligned_cols=165 Identities=16% Similarity=0.235 Sum_probs=85.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 304 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~ 304 (625)
+|+++|++|||||+-.+.|. .++|- ..|.+ + . ...-+.+..+.. .-...
T Consensus 3 lvIVTGlSGAGKsvAl~~lE-DlGyy-------cvDNL-------P----------p---~Llp~~~~~~~~---~~~~~ 51 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLE-DLGYY-------CVDNL-------P----------P---QLLPKLADLMLT---LESRI 51 (286)
T ss_pred EEEEecCCCCcHHHHHHHHH-hcCee-------eecCC-------C----------H---HHHHHHHHHHhh---cccCC
Confidence 78999999999999988885 45544 33322 0 1 111122221111 00001
Q ss_pred CCcEEEEecCCCc--HHHHHHHHHHHcC-C--CeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHH
Q 006920 305 GGQVGIFDATNSS--RKRRNMLMKMAEG-N--CKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 379 (625)
Q Consensus 305 ~g~vvIvDatn~~--~~~R~~~~~l~~~-~--~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~ 379 (625)
..-.|++|-.+.. ....+.+.++.+. + ++++|+ .++++++++|....|. ..|...+. ...++.+.-.+.+
T Consensus 52 ~kvAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFL--eA~~~~Lv~RY~etRR-~HPL~~~~-~l~~~I~~ERelL- 126 (286)
T COG1660 52 TKVAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFL--EADDETLVRRYSETRR-SHPLSEDG-LLLEAIAKERELL- 126 (286)
T ss_pred ceEEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEE--ECchhHHHHHHhhhhh-cCCCCccC-cHHHHHHHHHHHH-
Confidence 2334678887773 1233334444444 3 566666 6789999999887663 35655443 3333333333333
Q ss_pred hhhhccccCCCCCeeEEeeccCCCCccceecccccCcCCceeeeeeccCCCCccEEEecccc
Q 006920 380 NYEKVYEPVDEGSYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGE 441 (625)
Q Consensus 380 ~y~~~fEp~~e~~~i~~id~~~~~g~~~~~~~~~g~L~~~~~~~l~n~~~~~~~I~LVRHGe 441 (625)
+|+-+... .+||+ .++.. .-|..||..++..-+-..-+|.+.--|-
T Consensus 127 ------~pLk~~A~-~vIDT-----s~ls~----~~Lr~~i~~~f~~~~~~~~~v~v~SFGF 172 (286)
T COG1660 127 ------APLREIAD-LVIDT-----SELSV----HELRERIRTRFLGKEERTLTVTVESFGF 172 (286)
T ss_pred ------HHHHHHhh-hEeec-----ccCCH----HHHHHHHHHHHccCCCcceEEEEEeccc
Confidence 33322211 34665 12222 3355666666665555555666654443
No 222
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0085 Score=65.25 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=37.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
.+|.+|.++|..|+||||++..||..+...|.++-+++.|.+|
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4568999999999999999999999987777788889888776
No 223
>CHL00181 cbbX CbbX; Provisional
Probab=96.86 E-value=0.029 Score=58.99 Aligned_cols=31 Identities=35% Similarity=0.476 Sum_probs=25.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccC
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG 251 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g 251 (625)
..+..+++.|-||+||||+|+.+++.+...|
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3456789999999999999999999875443
No 224
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.84 E-value=0.017 Score=58.89 Aligned_cols=38 Identities=16% Similarity=0.038 Sum_probs=32.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
..++++|-||+||||++++++.++...|.++.+++.+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 36899999999999999999998876677777877765
No 225
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.019 Score=63.19 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=36.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH-cccCCcceEEechHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL-RWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L-~~~g~~~~~~~~D~~Rk 264 (625)
++.+|+++|.+|+||||++.+||..+ ...|.++-+++.|.+|-
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 46799999999999999999999865 35577788899998765
No 226
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=96.83 E-value=0.038 Score=56.87 Aligned_cols=185 Identities=15% Similarity=0.173 Sum_probs=90.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCC---cceEEech----HHHHHHcCCCCC------CcccC-CCCHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGH---DTKHFNVG----KYRRLKHGVNQS------ADFFR-ADNPEGME 285 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~---~~~~~~~D----~~Rk~~~g~~~~------~~f~~-~~~~~~~~ 285 (625)
+....+|++-|--|||||++|++||+.|+.... +.+.+=.| +.|..-...++. ..|+. ..++.+.+
T Consensus 68 ~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~ 147 (393)
T KOG3877|consen 68 HENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAA 147 (393)
T ss_pred cccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHH
Confidence 556689999999999999999999999985422 22222112 223321111111 12222 22344444
Q ss_pred HHHHHHH----HHHHHHHHHHHcCCcEEEEecC---------------CCcHHHHHHHHHHHcC-----CCeEEEEEEec
Q 006920 286 ARNEVAA----LAMEDMISWMHEGGQVGIFDAT---------------NSSRKRRNMLMKMAEG-----NCKIIFLETIC 341 (625)
Q Consensus 286 ~~~~va~----~~l~~~~~~l~~~g~vvIvDat---------------n~~~~~R~~~~~l~~~-----~~~vvfle~~~ 341 (625)
+...++. .-++.+...|+.| +-||+.-+ ...++.++-..++++. -.+-+.|++..
T Consensus 148 ~Q~r~y~~R~~QY~dAL~HiL~TG-QGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~ 226 (393)
T KOG3877|consen 148 MQDRIYNCRFDQYLDALAHILNTG-QGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDT 226 (393)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcC-CeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcC
Confidence 4444433 2233333445554 44466332 2333444444444222 12334455567
Q ss_pred ChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHhhhhcccc-CCCCCeeEEeeccCCCCccceeccc
Q 006920 342 NDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEP-VDEGSYIKMIDMVSGHGGQIQVNNI 412 (625)
Q Consensus 342 ~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~y~~~fEp-~~e~~~i~~id~~~~~g~~~~~~~~ 412 (625)
|..++.++ +++|. .++--.. ..+..+++.. +.|+++|-+ +++.+.+...|--++++....++.|
T Consensus 227 Pv~~v~~~-Ik~rg--~~~Eik~-~s~aYL~diE---~~YK~~fL~e~s~h~eiL~Ydwt~~gdt~~VVEDI 291 (393)
T KOG3877|consen 227 PVNKVLEN-IKRRG--NTDEIKT-VSEAYLKDIE---ESYKDSFLREYSNHSEILAYDWTKPGDTDAVVEDI 291 (393)
T ss_pred CcHHHHHH-HHhcC--CCcceee-hhHHHHHHHH---HHHHHHHHHHHhhhhheeeeecccCCCchhHHHhh
Confidence 76666555 45432 2322111 2233333333 455666543 3444555555654555555555554
No 227
>PLN02748 tRNA dimethylallyltransferase
Probab=96.82 E-value=0.0023 Score=71.32 Aligned_cols=90 Identities=18% Similarity=0.147 Sum_probs=55.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH---HHHHHcCCC-----------CC-CcccCCCCHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK---YRRLKHGVN-----------QS-ADFFRADNPEGM 284 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~---~Rk~~~g~~-----------~~-~~f~~~~~~~~~ 284 (625)
..++.+|+++|.+|||||++|..||+.++.. +++.|. ||.+--|.. .. -++.+.....+.
T Consensus 19 ~~~~~~i~i~GptgsGKs~la~~la~~~~~e-----ii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv 93 (468)
T PLN02748 19 KGKAKVVVVMGPTGSGKSKLAVDLASHFPVE-----IINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTA 93 (468)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCee-----EEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcH
Confidence 4556789999999999999999999999876 888883 443322211 11 112222333344
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEecCCCc
Q 006920 285 EARNEVAALAMEDMISWMHEGGQVGIFDATNSS 317 (625)
Q Consensus 285 ~~~~~va~~~l~~~~~~l~~~g~vvIvDatn~~ 317 (625)
......+..+++ .....+..++|+-+|+.+
T Consensus 94 ~~F~~~A~~~I~---~I~~rgk~PIlVGGTglY 123 (468)
T PLN02748 94 KDFRDHAVPLIE---EILSRNGLPVIVGGTNYY 123 (468)
T ss_pred HHHHHHHHHHHH---HHHhcCCCeEEEcChHHH
Confidence 433344444333 345567777788777775
No 228
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.043 Score=61.43 Aligned_cols=31 Identities=26% Similarity=0.196 Sum_probs=27.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+-+..++++|-||+||||+|+.||+.+...
T Consensus 37 ~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 37 GKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4456789999999999999999999999864
No 229
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.051 Score=62.84 Aligned_cols=31 Identities=29% Similarity=0.287 Sum_probs=27.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+-+..++++|-+|+||||+|+.||+.+.+.
T Consensus 34 grl~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 34 GRLHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4457899999999999999999999999864
No 230
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.72 E-value=0.043 Score=63.31 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=28.3
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..+-+..++|+|-+|.||||+|+.|++.|.+.
T Consensus 34 ~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 34 QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred hCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35567889999999999999999999999873
No 231
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.70 E-value=0.0052 Score=58.56 Aligned_cols=24 Identities=33% Similarity=0.438 Sum_probs=19.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
|+++|-||+||||+++.|+++ +..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~ 25 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYP 25 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-E
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCe
Confidence 789999999999999999998 544
No 232
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.68 E-value=0.01 Score=55.19 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=31.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+++++|-||+||||++..++..+...+..+.+++.+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 4789999999999999999999876677777777654
No 233
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0028 Score=66.46 Aligned_cols=28 Identities=32% Similarity=0.352 Sum_probs=25.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..+|++.|.||+|||+++|+||++|...
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4689999999999999999999999643
No 234
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.62 E-value=0.046 Score=61.89 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=27.4
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+-+..++++|-||+||||+|+.+|+.+.+.
T Consensus 40 ~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 40 DRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4556789999999999999999999999764
No 235
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.61 E-value=0.0043 Score=57.00 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=39.6
Q ss_pred HHHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEE
Q 006920 209 AAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 257 (625)
Q Consensus 209 ~~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~ 257 (625)
.++......+.+.+|+++-+.|-||+|||.+|+.||+.|-..|.+...+
T Consensus 39 ~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V 87 (127)
T PF06309_consen 39 NAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFV 87 (127)
T ss_pred HHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCce
Confidence 3444455555789999999999999999999999999987666666655
No 236
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.60 E-value=0.012 Score=63.84 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=37.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
.++.+|+++|..|+||||++..|+..+...|.++-+++.|.+|
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR 246 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence 4578999999999999999999999887677888899998775
No 237
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.58 E-value=0.0022 Score=57.23 Aligned_cols=39 Identities=31% Similarity=0.285 Sum_probs=31.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+..++++|-||+||||+++.|+..+...+..+..++.+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 347899999999999999999999887654555665543
No 238
>PRK06893 DNA replication initiation factor; Validated
Probab=96.58 E-value=0.012 Score=59.53 Aligned_cols=36 Identities=8% Similarity=0.020 Sum_probs=30.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.++++|-||+||||++++++..+...+.++.+++..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 689999999999999999999986666777777664
No 239
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.56 E-value=0.002 Score=65.83 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=27.2
Q ss_pred EEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 228 LVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 228 l~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
++|.+||||||+++.+.+.+...|.++.++|.|
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 479999999999999999999999999999988
No 240
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.0094 Score=56.90 Aligned_cols=107 Identities=22% Similarity=0.282 Sum_probs=59.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHH--HcCC-----C-------CCCcccCCC--CHHH--H
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL--KHGV-----N-------QSADFFRAD--NPEG--M 284 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~--~~g~-----~-------~~~~f~~~~--~~~~--~ 284 (625)
++=|.++|.||+||||++++++..|...|.++-=|-.-++|+- ..|- . ....+ ... +.+. .
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~-~~~rvGkY~V~v 83 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGF-SRPRVGKYGVNV 83 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCC-CCcccceEEeeH
Confidence 4569999999999999999999999876655544433334421 1110 0 00111 111 1111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEecCCCcH----HHHHHHHHHHcCCCeE
Q 006920 285 EARNEVAALAMEDMISWMHEGGQVGIFDATNSSR----KRRNMLMKMAEGNCKI 334 (625)
Q Consensus 285 ~~~~~va~~~l~~~~~~l~~~g~vvIvDatn~~~----~~R~~~~~l~~~~~~v 334 (625)
+..++++..+++.+ +. .-.++|+|-..+-. ..++.+.+..+.+-++
T Consensus 84 ~~le~i~~~al~rA---~~-~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpl 133 (179)
T COG1618 84 EGLEEIAIPALRRA---LE-EADVIIIDEIGPMELKSKKFREAVEEVLKSGKPL 133 (179)
T ss_pred HHHHHHhHHHHHHH---hh-cCCEEEEecccchhhccHHHHHHHHHHhcCCCcE
Confidence 33344444444322 22 35788999998754 5566666665555443
No 241
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.55 E-value=0.0029 Score=66.47 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=33.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc--CCcceEEechH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGK 261 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~--g~~~~~~~~D~ 261 (625)
.+.|.+|-++|-+||||||+|+.|+..+... +..+.++..|.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG 102 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence 5679999999999999999999998888622 33566777765
No 242
>PF13173 AAA_14: AAA domain
Probab=96.54 E-value=0.019 Score=52.61 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=53.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 303 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~ 303 (625)
.++++.|..|+||||+++++++.+. ...+...++.|+.+.... ... . +.+...+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~-----------------~~~-~----~~~~~~~~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRL-----------------ADP-D----LLEYFLELIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHH-----------------hhh-h----hHHHHHHhhc
Confidence 4789999999999999999999876 223334677765543110 000 0 1111111222
Q ss_pred cCCcEEEEecCCCcHHHHHHHHHHHcCC
Q 006920 304 EGGQVGIFDATNSSRKRRNMLMKMAEGN 331 (625)
Q Consensus 304 ~~g~vvIvDatn~~~~~R~~~~~l~~~~ 331 (625)
.+...+++|-....+...+.++.+.+.+
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNG 87 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhc
Confidence 3567789998888877777777774433
No 243
>PLN02796 D-glycerate 3-kinase
Probab=96.52 E-value=0.003 Score=67.63 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=35.2
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
++|++|.++|.+||||||+++.|...+...|..+-.++.|++
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 578999999999999999999999999766656666766654
No 244
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.064 Score=60.40 Aligned_cols=31 Identities=29% Similarity=0.293 Sum_probs=27.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+-|..++++|.+|+||||+|+.+|+.|.+.
T Consensus 32 ~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 32 NKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 4557789999999999999999999998754
No 245
>PRK13695 putative NTPase; Provisional
Probab=96.51 E-value=0.017 Score=55.64 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHD 253 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~ 253 (625)
.|+++|.+|+||||+++.++..+...|..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~ 30 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYK 30 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 58999999999999999998887533444
No 246
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.49 E-value=0.0059 Score=59.16 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
++|+++|-|||||||+|..|+..++
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcC
Confidence 3689999999999999999999875
No 247
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.48 E-value=0.023 Score=51.20 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=29.8
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.+..++++|-||+||||+++.+++.+...+.....++..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 345788999999999999999999985444445555543
No 248
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.45 E-value=0.022 Score=57.58 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=30.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcC
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG 268 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g 268 (625)
...|..++++|.||+||||+|+.|+. ++.+++.|..-+.+.|
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~-------~~~~~~~d~~~~~l~g 50 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPG-------KTLVLSFDMSSKVLIG 50 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCC-------CCEEEeccccchhccC
Confidence 34467899999999999999998851 2337777754443433
No 249
>PRK05973 replicative DNA helicase; Provisional
Probab=96.44 E-value=0.013 Score=59.86 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=32.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.+..++++.|-||+|||++|-+++...-..|.++.+|+.+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 4567899999999999999999988764557778788754
No 250
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.42 E-value=0.0052 Score=64.43 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=28.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+|+++|.+|||||++|..|++.++.. +++.|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~-----iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAE-----IISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCc-----EEEech
Confidence 58999999999999999999999876 777775
No 251
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.42 E-value=0.069 Score=58.72 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=27.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+-|..++++|.||+||||+|+.+|+.+.+.
T Consensus 35 ~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 35 GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4567789999999999999999999999864
No 252
>PHA00729 NTP-binding motif containing protein
Probab=96.40 E-value=0.0047 Score=62.44 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=24.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
+..-|+++|-||+||||+|.+|++.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446799999999999999999999875
No 253
>PRK12377 putative replication protein; Provisional
Probab=96.39 E-value=0.044 Score=56.38 Aligned_cols=42 Identities=24% Similarity=0.224 Sum_probs=36.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
..-+++.|-||+|||++|.+++..+...|..+.+++..++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 356899999999999999999999988888888888766544
No 254
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.39 E-value=0.004 Score=68.04 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=35.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
..+|++|-++|.+||||||+++.|...+...|.++-.++.|++
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf 251 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDF 251 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence 4479999999999999999999999888666666667777754
No 255
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.38 E-value=0.027 Score=56.96 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=33.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc-CCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~-g~~~~~~~~D 260 (625)
.++.+++++|.||+|||+++.+++..+-.. |.++-+|+.+
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 356799999999999999999998876544 7788888755
No 256
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.38 E-value=0.06 Score=63.04 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=27.4
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+-+..++|+|-+|+||||+|+.|++.|.+.
T Consensus 35 gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 35 GRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4557788999999999999999999999864
No 257
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.36 E-value=0.0049 Score=57.30 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=26.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+.+.+|+++|-+|+||||+++.+++.|+..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 446689999999999999999999999754
No 258
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.051 Score=64.66 Aligned_cols=31 Identities=26% Similarity=0.241 Sum_probs=27.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+-+..++++|-||+||||+|+.|++.|.+.
T Consensus 35 ~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 35 QRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 4557889999999999999999999999864
No 259
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.35 E-value=0.11 Score=59.24 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=26.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
.+.+..++++|-+|+||||+|+.|++.|.+
T Consensus 35 ~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 35 QKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456678999999999999999999999875
No 260
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.33 E-value=0.11 Score=60.20 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=28.6
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..+-+..++++|-+|+||||+|+.|++.|.+.
T Consensus 34 ~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 34 QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35667899999999999999999999999864
No 261
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.31 E-value=0.019 Score=57.94 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=32.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
--+++|.|||||||.+-.+.+-|...|.++.++|.|
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLD 39 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLD 39 (290)
T ss_pred ceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecC
Confidence 357899999999999999999999999999999887
No 262
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.049 Score=61.25 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=27.0
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+-|..++++|.||+||||+|+.+++.+...
T Consensus 33 ~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 33 NSISHAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4556789999999999999999999998753
No 263
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.30 E-value=0.066 Score=54.96 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=35.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
.-++|+|-||+|||+++.+++.++...|..+.+++..++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 46899999999999999999999987788888888766543
No 264
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.30 E-value=0.14 Score=58.90 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=27.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+.+..++++|.+|+||||+|+.+|+.|.+.
T Consensus 35 ~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 35 NKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4557889999999999999999999999754
No 265
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.28 E-value=0.099 Score=60.74 Aligned_cols=31 Identities=29% Similarity=0.239 Sum_probs=27.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+-+..++++|-+|+||||+|+.|++.|.+.
T Consensus 35 ~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 35 GRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4567789999999999999999999999864
No 266
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.26 E-value=0.14 Score=52.41 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=24.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.++-+++++|.+|+||||+++.++..+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3455789999999999999999999886
No 267
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.25 E-value=0.0044 Score=64.94 Aligned_cols=43 Identities=33% Similarity=0.357 Sum_probs=36.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc-C-CcceEEechHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-G-HDTKHFNVGKYR 263 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~-g-~~~~~~~~D~~R 263 (625)
.++.+|+++|.+|+||||++..|+.++... | .++-+++.|.+|
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 357799999999999999999999998654 4 788889888765
No 268
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.24 E-value=0.14 Score=59.78 Aligned_cols=31 Identities=32% Similarity=0.294 Sum_probs=27.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+-+..++|+|-+|+||||+|+.|++.|.+.
T Consensus 35 ~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 35 GRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 4557889999999999999999999998765
No 269
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.041 Score=62.69 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=27.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+.|.=|++.|.||||||++||+||..-+..
T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred CCCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 3667789999999999999999999987765
No 270
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.046 Score=61.77 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=24.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
|.=|++.|.||+|||.+|+++|.+|+.+
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcCCc
Confidence 4448899999999999999999999865
No 271
>PRK13768 GTPase; Provisional
Probab=96.21 E-value=0.0056 Score=63.13 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=35.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+++|++.|.+|+||||++..++..+...|.++-+++.|-
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 368999999999999999999999988899999998873
No 272
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.18 E-value=0.075 Score=54.85 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=24.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
....-+++.|-||+||||+|+.+++.+..
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34456889999999999999999998753
No 273
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.0077 Score=60.98 Aligned_cols=153 Identities=21% Similarity=0.281 Sum_probs=85.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHHHHcCCCCCCcccCCCCHHHHHHH-------HHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEAR-------NEVAAL 293 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk~~~g~~~~~~f~~~~~~~~~~~~-------~~va~~ 293 (625)
++.=.+++|-||+||.|+|..|++.++.. ++.+++ +|..... .+ .. +.+..... .++...
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~-----hl~tGdllr~~ia~--~t-el----g~~~~~~~~~g~lvpDeiv~~ 81 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVI-----HISTGDLLRDEIAS--GT-EL----GKEAKEAIDKGKLVPDEVVVR 81 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCc-----cchhHHHHHHHHhc--cC-cH----HHHHHHHHHhcCcCcHHHHHH
Confidence 46778999999999999999999999888 676665 5654431 11 00 01000000 111111
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCC-eEEEEEEecChHHHHHHHHHhhhc-----------cCCC-
Q 006920 294 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNC-KIIFLETICNDRDIIERNIRLKIQ-----------QSPD- 360 (625)
Q Consensus 294 ~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~-~vvfle~~~~~e~i~~R~i~rr~~-----------~~pd- 360 (625)
+++..+.-. ....-.|+|....+...-+.+.+. +. .-.+|++.|+++.+.+|...|+.. .-|.
T Consensus 82 ~l~~~l~~~-~~~~~~ildg~Prt~~qa~~l~~~---~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~ 157 (235)
T KOG3078|consen 82 LLEKRLENP-RCQKGFILDGFPRTVQQAEELLDR---IAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKV 157 (235)
T ss_pred HHHhhcccc-ccccccccCCCCcchHHHHHHHHc---cCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCcc
Confidence 222111111 123445888877776544443332 22 234666688998888887776432 1111
Q ss_pred -----CCCC---CCHHHHHHHHHHHHHhhhhccccCCC
Q 006920 361 -----YAEE---PDFEAGLQDFKNRLANYEKVYEPVDE 390 (625)
Q Consensus 361 -----~sd~---~d~e~~~~~~~~rl~~y~~~fEp~~e 390 (625)
..+. ...++..+....|++.|..+-.|+.+
T Consensus 158 ~~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~e 195 (235)
T KOG3078|consen 158 PGKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLE 195 (235)
T ss_pred ccccccccChhhcCccccHHHHHHHHHHHhhcchHHHH
Confidence 1100 12344566788899999887776654
No 274
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.16 E-value=0.094 Score=62.70 Aligned_cols=32 Identities=28% Similarity=0.274 Sum_probs=27.9
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..+-+..++|+|-+|+||||+|+.|++.|.+.
T Consensus 33 ~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 33 SGRINHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred hCCCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 34567789999999999999999999999763
No 275
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.13 E-value=0.088 Score=55.24 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=24.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccC
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLG 251 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g 251 (625)
..-+++.|-||+||||+|+.+++.+...|
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 34689999999999999999999886544
No 276
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.12 E-value=0.058 Score=52.01 Aligned_cols=36 Identities=22% Similarity=0.121 Sum_probs=29.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
++++.|-||+|||++|.+++...-..|.++.+++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 378999999999999999988765567778788764
No 277
>PRK08727 hypothetical protein; Validated
Probab=96.12 E-value=0.045 Score=55.62 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=32.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.++++|-+|+|||+++.+++..+...|.++.+++.++
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 4999999999999999999998877788888877654
No 278
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.091 Score=59.57 Aligned_cols=31 Identities=23% Similarity=0.126 Sum_probs=27.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..-|.+++++|-||+||||+|+.+++.+...
T Consensus 33 ~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 33 GRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4567889999999999999999999999754
No 279
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.09 E-value=0.0077 Score=64.84 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=26.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
..++.+++|+|.||+||||+|++|++.++.
T Consensus 75 ~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456789999999999999999999999964
No 280
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.09 E-value=0.094 Score=58.18 Aligned_cols=41 Identities=29% Similarity=0.325 Sum_probs=35.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHc--ccCCcceEEechHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYR 263 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~--~~g~~~~~~~~D~~R 263 (625)
+.+|+++|.+|+||||++..||.++. ..|.++-+++.|.+|
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 45899999999999999999998876 457788899999876
No 281
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.08 E-value=0.048 Score=56.26 Aligned_cols=39 Identities=18% Similarity=0.073 Sum_probs=32.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc-CCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~-g~~~~~~~~D 260 (625)
...+++++|-||+||||++.+++..+-.. |.++.+++.+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 45589999999999999999998876444 7778788764
No 282
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.13 Score=58.35 Aligned_cols=31 Identities=26% Similarity=0.270 Sum_probs=27.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+-+..++++|-||+||||+|+.||+.|.+.
T Consensus 35 ~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 35 QYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4567789999999999999999999999864
No 283
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.07 E-value=0.0075 Score=54.69 Aligned_cols=36 Identities=33% Similarity=0.381 Sum_probs=32.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
|+++|.+|+||||++..|+..+...|.++.+++.|-
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 789999999999999999999977788888898874
No 284
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.058 Score=58.73 Aligned_cols=43 Identities=30% Similarity=0.363 Sum_probs=34.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc-ccC-CcceEEechHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR-WLG-HDTKHFNVGKYR 263 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~-~~g-~~~~~~~~D~~R 263 (625)
.++.+|+|+|.+|+||||++.+|+..+- ..| .++-++..|.+|
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 4567999999999999999999998763 334 466678888775
No 285
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.04 E-value=0.011 Score=62.44 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=40.0
Q ss_pred HHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 210 AVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 210 ~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.+...... ....+.+|.++|.|||||||++..|+..+...|.++.+++.|
T Consensus 22 ~~~~~~~~-~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 22 QLLDRIMP-YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred HHHHhCCc-ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 34444432 356688999999999999999999999988778888888877
No 286
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.04 E-value=0.045 Score=57.58 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
....+++++||+||||||+.|.|-+-.
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR~~NrLi 78 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVRLLNRLI 78 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHHHHhccC
Confidence 457899999999999999999987654
No 287
>PRK05642 DNA replication initiation factor; Validated
Probab=96.02 E-value=0.062 Score=54.71 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=33.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
-.++++|-+|+|||+++++++.++...|.++.+++.+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 357899999999999999999887666788888887764
No 288
>PRK08181 transposase; Validated
Probab=96.02 E-value=0.052 Score=56.53 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=34.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
.-++++|-||+|||++|.+++..+-..|..+.+++..++..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~ 147 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ 147 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH
Confidence 34999999999999999999998877788888888766544
No 289
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.00 E-value=0.019 Score=63.17 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=26.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
......|+++|-+||||||++++|+++++..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4445679999999999999999999998754
No 290
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.98 E-value=0.16 Score=55.07 Aligned_cols=30 Identities=33% Similarity=0.309 Sum_probs=26.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
.+-|..++++|-||+||||+|+.+++.+..
T Consensus 35 ~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 35 GRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 456788999999999999999999999874
No 291
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.98 E-value=0.17 Score=58.62 Aligned_cols=31 Identities=26% Similarity=0.207 Sum_probs=27.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+-+..++++|-||+||||+|+.|++.+...
T Consensus 35 ~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 35 GRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4557789999999999999999999999754
No 292
>PRK09087 hypothetical protein; Validated
Probab=95.97 E-value=0.04 Score=55.88 Aligned_cols=31 Identities=26% Similarity=0.218 Sum_probs=25.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.++++|-+||||||+++.+++..+.. +++.+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~-----~i~~~ 76 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL-----LIHPN 76 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE-----EecHH
Confidence 47999999999999999999876655 55553
No 293
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.95 E-value=0.0076 Score=57.48 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=31.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
+|.++|.+||||||++.+|.+.|...|.++-++..|
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 578999999999999999999998778788777543
No 294
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.24 Score=57.34 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=26.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+-+..++|+|-||+||||+|+.||+.+.+.
T Consensus 36 ri~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 36 RVAPAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 346789999999999999999999999753
No 295
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=95.95 E-value=0.0078 Score=71.85 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=34.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRR 264 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk 264 (625)
+..+++|.+.|.|||||||+|+.||++|++. ++++|. ||-
T Consensus 31 ~m~~~~i~idG~~gsGKst~~~~la~~l~~~-----~~~~g~~yRa 71 (863)
T PRK12269 31 PMGTVIIALDGPAGSGKSSVCRLLASRLGAQ-----CLNTGSFYRA 71 (863)
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHHHHH
Confidence 3344799999999999999999999999998 999886 554
No 296
>PLN02772 guanylate kinase
Probab=95.94 E-value=0.078 Score=57.81 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=24.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
...+|+++|.+|+||+|+.+.|.+.+.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p 160 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFP 160 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhcc
Confidence 557999999999999999999988753
No 297
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.94 E-value=0.011 Score=57.60 Aligned_cols=37 Identities=19% Similarity=0.070 Sum_probs=30.0
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEE
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 257 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~ 257 (625)
..+.+|.++|.+||||||+.+.|.+.|...|.++-.+
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~I 40 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEE
Confidence 3456899999999999999999999998666554444
No 298
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=95.93 E-value=0.45 Score=48.42 Aligned_cols=110 Identities=16% Similarity=0.169 Sum_probs=67.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
...|+||++-|+.||||..+.+.|.+.+.-.|+++.-|....-.+ ...-.+-...
T Consensus 28 ~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~eE-------------------------~~~p~lwRfw 82 (230)
T TIGR03707 28 TGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDRE-------------------------RTQWYFQRYV 82 (230)
T ss_pred cCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHH-------------------------HcChHHHHHH
Confidence 557999999999999999999999998877765555553211111 0111222222
Q ss_pred HHHHcCCcEEEEecCCCcHHH-------------HHHH------HHH-HcCCCeEEEEEEecChHHHHHHHHHhh
Q 006920 300 SWMHEGGQVGIFDATNSSRKR-------------RNML------MKM-AEGNCKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~-------------R~~~------~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr 354 (625)
..+-..|.++|+|-+.-.... ...+ ... .+.|+.++=+.++.+.++-.+|..++.
T Consensus 83 ~~lP~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~ 157 (230)
T TIGR03707 83 QHLPAAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARI 157 (230)
T ss_pred HhCCCCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHh
Confidence 234456777788766554422 1111 112 567888877777888777777766553
No 299
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.18 Score=58.19 Aligned_cols=31 Identities=29% Similarity=0.245 Sum_probs=27.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+-+..++++|-+|+||||+|+.|++.+.+.
T Consensus 35 ~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 35 GRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 4567889999999999999999999999754
No 300
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.88 E-value=0.0089 Score=50.42 Aligned_cols=34 Identities=32% Similarity=0.303 Sum_probs=29.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEe
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 258 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~ 258 (625)
+++++|.+|+||||++..|+..|...|.++-.++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4788999999999999999999987777777776
No 301
>PRK04296 thymidine kinase; Provisional
Probab=95.88 E-value=0.032 Score=54.91 Aligned_cols=37 Identities=14% Similarity=0.024 Sum_probs=31.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEec
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 259 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~ 259 (625)
..+++++|-||+||||.+..++.++...|.++.++..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3689999999999999999999988666777777743
No 302
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.19 Score=58.41 Aligned_cols=29 Identities=31% Similarity=0.313 Sum_probs=25.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
-+..++++|-+|+||||+|+.||+.|.+.
T Consensus 37 l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 37 IAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 34568999999999999999999999764
No 303
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.81 E-value=0.15 Score=59.07 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=28.1
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..+-+..++|+|.+|+||||+|+.||+.|.+.
T Consensus 42 ~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 42 TGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 34557789999999999999999999999865
No 304
>PRK06526 transposase; Provisional
Probab=95.80 E-value=0.052 Score=56.05 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=33.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
++.-++++|-||+|||++|..|+..+-..|.++.++...++
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l 137 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQW 137 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHH
Confidence 34468999999999999999999988767777767666544
No 305
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.79 E-value=0.062 Score=55.29 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=62.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc-CCcceEEechHH-----HHHH---cCCCCCCcccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKY-----RRLK---HGVNQSADFFRADNPEGMEARNEVA 291 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~-g~~~~~~~~D~~-----Rk~~---~g~~~~~~f~~~~~~~~~~~~~~va 291 (625)
.++.++++.|.||+|||+++-.++..+-.. |..+.+|+.+.= .+.+ .+.+........-....++.
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~----- 91 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFER----- 91 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHH-----
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHH-----
Confidence 456799999999999999999999987655 588889987521 1211 12221110001111111111
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCcH-HHHHHHHHH-Hc-CCCeEEEEE
Q 006920 292 ALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AE-GNCKIIFLE 338 (625)
Q Consensus 292 ~~~l~~~~~~l~~~g~vvIvDatn~~~-~~R~~~~~l-~~-~~~~vvfle 338 (625)
+.++...+.+ ....|.|....+. .-++.++.+ .+ .++.++||+
T Consensus 92 ---~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~ID 137 (259)
T PF03796_consen 92 ---LQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFID 137 (259)
T ss_dssp ---HHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred ---HHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEec
Confidence 1122233443 3465777666554 567777777 55 778888886
No 306
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.77 E-value=0.35 Score=56.12 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=28.3
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..+-+..++++|.+|+||||+|+.||+.|.+.
T Consensus 34 ~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 34 MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34667789999999999999999999999874
No 307
>PRK08116 hypothetical protein; Validated
Probab=95.77 E-value=0.12 Score=53.85 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=33.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
+.-+++.|-||+|||++|.+++.++...|..+.+++..++
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~l 153 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQL 153 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3468999999999999999999998766778878887654
No 308
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.77 E-value=0.011 Score=64.40 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=30.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEE
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 257 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~ 257 (625)
.+|.+|+++|++||||||++.+|.+.|... .++-++
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~i 38 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYY 38 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEE
Confidence 368999999999999999999999999765 555555
No 309
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.05 Score=59.63 Aligned_cols=139 Identities=19% Similarity=0.250 Sum_probs=83.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
...-.+|+=+..-|+||||+|+.|.+-++|. ++.-|++ .| .+++.. .+ ..+.
T Consensus 371 ~~e~tll~pia~igcgktt~ak~l~~lf~w~-----~vqnd~l----sg---------k~~~k~------~~----kai~ 422 (758)
T COG5324 371 GKEFTLLVPIATIGCGKTTVAKILEKLFGWP-----VVQNDNL----SG---------KGGPKR------FA----KAII 422 (758)
T ss_pred cceeEEEEEEEEeccCcccHHHHHHHHcCCc-----ccccCCC----CC---------CCchhH------HH----HHHH
Confidence 3445678888888999999999999999999 7755544 12 222211 11 1112
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHH---HcCCCeEEEEEEecC--h-HHHHHHHHHhhhccCCCCCCCCCHHHHHHH
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKM---AEGNCKIIFLETICN--D-RDIIERNIRLKIQQSPDYAEEPDFEAGLQD 373 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l---~~~~~~vvfle~~~~--~-e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~ 373 (625)
...+.+..+|++|-.|-.-..|..+..- ...|++++-+-..-. . +-...|.++|... . ... .+++..+.
T Consensus 423 ~~~r~~~~~v~~drnnh~~~~r~~lq~d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg~~-h---qsi-k~~eg~~k 497 (758)
T COG5324 423 EEFRNGHSVVFADRNNHISNMRSTLQTDILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGDR-H---QSI-KVSEGVDK 497 (758)
T ss_pred HHhccCceEEEEcccchhhhhhhhhhcceEEEecCcEEEecccccCcccHHHHHHHHHhccCC-c---cce-eeccchHH
Confidence 2234466777777777766777766653 234556555433111 1 2334444444221 1 112 34556677
Q ss_pred HHHHHHhhhhccccCCCC
Q 006920 374 FKNRLANYEKVYEPVDEG 391 (625)
Q Consensus 374 ~~~rl~~y~~~fEp~~e~ 391 (625)
....+..+-++|.|++.+
T Consensus 498 v~~imn~f~k~ykp~~~~ 515 (758)
T COG5324 498 VKAIMNTFYKQYKPFDAG 515 (758)
T ss_pred HHHHHHHHHHhcCCCCCC
Confidence 777888888999999865
No 310
>PRK09183 transposase/IS protein; Provisional
Probab=95.73 E-value=0.071 Score=55.18 Aligned_cols=41 Identities=24% Similarity=0.195 Sum_probs=32.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
+..++++|-||+||||+|..|+..+...|..+.+++..++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 45677999999999999999988876677778777754443
No 311
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.70 E-value=0.23 Score=57.28 Aligned_cols=32 Identities=28% Similarity=0.238 Sum_probs=28.3
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..+-+..++++|-+|+||||+|+.||+.+.+.
T Consensus 31 ~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 31 AGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 35667889999999999999999999999864
No 312
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=0.07 Score=56.35 Aligned_cols=122 Identities=18% Similarity=0.166 Sum_probs=70.8
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCC-------------C---CcccCCCCHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ-------------S---ADFFRADNPEGME 285 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~-------------~---~~f~~~~~~~~~~ 285 (625)
+-.||+++|-.|||||-+|..||.+++.. +++.|.+.- -.|++. + .++.....+.+..
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~E-----IINsDkmQv-YkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~ 79 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGE-----IINSDKMQV-YKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAG 79 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCce-----eecccceee-ecCcccccccCChhhcCCCChHHhCcCChHhhccHH
Confidence 56799999999999999999999999887 888875421 112110 0 0111111122223
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHH-----H-----------HcCCCeEEEEEEecChHHHHHH
Q 006920 286 ARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMK-----M-----------AEGNCKIIFLETICNDRDIIER 349 (625)
Q Consensus 286 ~~~~va~~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~-----l-----------~~~~~~vvfle~~~~~e~i~~R 349 (625)
..+..+..+.+ ...+.+...+|+-+||..-. ..+.+ . .+..+.+.||.++++...+.++
T Consensus 80 ~F~~~a~~aie---~I~~rgk~PIv~GGs~~yi~--al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~ 154 (348)
T KOG1384|consen 80 EFEDDASRAIE---EIHSRGKLPIVVGGSNSYLQ--ALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFER 154 (348)
T ss_pred HHHHHHHHHHH---HHHhCCCCCEEeCCchhhHH--HHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHH
Confidence 23333332222 33455666667777776532 11111 0 0112667888888898888877
Q ss_pred HHHhh
Q 006920 350 NIRLK 354 (625)
Q Consensus 350 ~i~rr 354 (625)
.-+|.
T Consensus 155 l~~RV 159 (348)
T KOG1384|consen 155 LDKRV 159 (348)
T ss_pred HHHHH
Confidence 76654
No 313
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.68 E-value=0.021 Score=57.01 Aligned_cols=42 Identities=12% Similarity=0.066 Sum_probs=33.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
..+..|+++|-||+||||+|+.+++++...+.....++.+.+
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 445679999999999999999999988766666667766544
No 314
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=95.67 E-value=0.033 Score=58.85 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=51.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH---HHHHHcCCCCC------------CcccCCCCHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK---YRRLKHGVNQS------------ADFFRADNPEGMEA 286 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~---~Rk~~~g~~~~------------~~f~~~~~~~~~~~ 286 (625)
.+.+|+++|..|||||.+|-.||++ ... +++.|. ||.+--|.... -++.+.....+...
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~-~~e-----IIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~ 76 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKG-KAE-----IINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGI 76 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh-CCc-----EEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHH
Confidence 3458999999999999999999999 334 888885 44332222111 01222223333333
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEecCCCc
Q 006920 287 RNEVAALAMEDMISWMHEGGQVGIFDATNSS 317 (625)
Q Consensus 287 ~~~va~~~l~~~~~~l~~~g~vvIvDatn~~ 317 (625)
....+..+++ +....+..++|+-+|+..
T Consensus 77 f~~~a~~~i~---~i~~~gk~PilvGGTglY 104 (300)
T PRK14729 77 FYKEALKIIK---ELRQQKKIPIFVGGSAFY 104 (300)
T ss_pred HHHHHHHHHH---HHHHCCCCEEEEeCchHH
Confidence 3334443333 334456666777777765
No 315
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.66 E-value=0.015 Score=55.74 Aligned_cols=35 Identities=29% Similarity=0.233 Sum_probs=30.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEe
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 258 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~ 258 (625)
.+|.++|.+||||||++.+|.+.|...|.++-.+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK 36 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIK 36 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 47999999999999999999999987777666653
No 316
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=95.65 E-value=0.41 Score=53.97 Aligned_cols=110 Identities=19% Similarity=0.194 Sum_probs=70.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
.+.|+||+|-|+-||||++..+.|.+.|.-.|.++.-+..-.-.+. ..-.+....
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~-------------------------~~~flwRfw 91 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEER-------------------------ERPPMWRFW 91 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHh-------------------------cCcHHHHHH
Confidence 5789999999999999999999999999888776666643211111 111222222
Q ss_pred HHHHcCCcEEEEecCCCcHH-------------HHHHHH------HH-HcCCCeEEEEEEecChHHHHHHHHHhh
Q 006920 300 SWMHEGGQVGIFDATNSSRK-------------RRNMLM------KM-AEGNCKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~-------------~R~~~~------~l-~~~~~~vvfle~~~~~e~i~~R~i~rr 354 (625)
..+-..|.++|+|-+.-.+. .+..+. .+ ...|+.++=+.++++.++-.+|..+|.
T Consensus 92 ~~lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~ 166 (493)
T TIGR03708 92 RRLPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLE 166 (493)
T ss_pred HhCCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHh
Confidence 23444677777776554432 222222 12 567888777777888877777776654
No 317
>PRK06921 hypothetical protein; Provisional
Probab=95.65 E-value=0.15 Score=53.06 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=32.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc-CCcceEEechH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGK 261 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~-g~~~~~~~~D~ 261 (625)
..-++|+|-||+|||+++.+++..+... |..+.++...+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~ 156 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVE 156 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHH
Confidence 4568999999999999999999998765 77777776543
No 318
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.64 E-value=0.26 Score=53.83 Aligned_cols=43 Identities=30% Similarity=0.275 Sum_probs=35.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc--ccCCcceEEechHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRR 264 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~--~~g~~~~~~~~D~~Rk 264 (625)
++.+|+|+|..|.||||.-.+||.++. ....++-++.+|.||-
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI 246 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI 246 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh
Confidence 478999999999999988888887765 4456677899999874
No 319
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.64 E-value=0.012 Score=55.76 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=32.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+|.++|.+|+||||+++.|+..+...|.++.+++.|.
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 3788999999999999999999987888888888773
No 320
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.62 E-value=0.042 Score=55.48 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=22.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
--+++.|.||.||||+|+.+|..++..
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~ 77 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVN 77 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred ceEEEECCCccchhHHHHHHHhccCCC
Confidence 358999999999999999999998754
No 321
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=95.62 E-value=0.026 Score=59.52 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCC-------CCCEEEEcCcHHHHHHHHHh
Q 006920 453 DTILSDAGEIYAKKLANFVEKRLKSE-------RAASIWTSTLQRTILTASPI 498 (625)
Q Consensus 453 D~pLTe~G~~QA~~l~~~L~~~l~~~-------~~~~I~sSpl~Ra~qTA~~i 498 (625)
...||+.|.+|...+|++|++++... ..-.|++|...||++||+.+
T Consensus 60 ~g~LT~~G~~q~~~lG~~lr~~Y~~l~~~~~~~~~v~vrSt~~~Rt~~Sa~af 112 (347)
T PF00328_consen 60 WGQLTPRGMEQHYQLGKRLRERYPGLFPDNYNPEQVYVRSTNKQRTIQSAQAF 112 (347)
T ss_dssp TTSBTHHHHHHHHHHHHHHHHHHHTSSTSSS-TTTEEEEEESSHHHHHHHHHH
T ss_pred CCcccchhhhHHHHHHHHHHHHHHHhccccccccceeEEEeccchHHHHHHHH
Confidence 33599999999999999999887532 22468999999999999998
No 322
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.27 Score=56.16 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=27.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+-+..++++|-||+||||+|+.+++.|.+.
T Consensus 35 ~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 35 QRLHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4557789999999999999999999999763
No 323
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.61 E-value=0.013 Score=64.03 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=37.0
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcc----cCCcceEEechHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRW----LGHDTKHFNVGKYRR 264 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~----~g~~~~~~~~D~~Rk 264 (625)
.+|.+|+++|.+|+||||++..||.++.. .|.++-+++.|.+|-
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 45789999999999999999999998752 467788898888763
No 324
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=95.60 E-value=0.02 Score=58.24 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=31.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEe
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 258 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~ 258 (625)
.+|.++|.+||||||++..|+++|...|.++-++-
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 37899999999999999999999988888887773
No 325
>COG4240 Predicted kinase [General function prediction only]
Probab=95.59 E-value=0.018 Score=57.84 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=38.2
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccC-CcceEEechHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKY 262 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g-~~~~~~~~D~~ 262 (625)
..+|+++-++|--||||||+|..|...|...| .++-.++.|++
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDl 90 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDL 90 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhh
Confidence 56799999999999999999999999998887 47778888875
No 326
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.58 E-value=0.24 Score=54.51 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=30.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc--CCcceEEechHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 262 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~--g~~~~~~~~D~~ 262 (625)
.++++|-||+|||+++++++..+... +..+.+++.+++
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~ 177 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF 177 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence 47889999999999999999988533 566777776654
No 327
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.54 E-value=0.14 Score=53.01 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=31.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
++.+++++|-||+||||+|-+++...-..|.++.+++.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 467899999999999999999987653446677777754
No 328
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.1 Score=58.94 Aligned_cols=43 Identities=33% Similarity=0.298 Sum_probs=34.7
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc--CCcceEEechHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKYR 263 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~--g~~~~~~~~D~~R 263 (625)
.++.+|+++|.+|+||||++.+|+..+-.. +.++.+++.|.+|
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 345789999999999999999999876433 4567788888766
No 329
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.53 E-value=0.014 Score=53.86 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=22.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
|+|+|-||+|||++++.|++.++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~ 26 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRP 26 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcc
Confidence 7899999999999999999999544
No 330
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.52 E-value=0.34 Score=56.89 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=28.2
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..+-+..++++|-+|+||||+|+.||+.|.+.
T Consensus 36 ~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 36 SNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred cCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 34567889999999999999999999999764
No 331
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.50 E-value=0.23 Score=53.14 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=27.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+.|..++++|-||+||||+|+.|++.+...
T Consensus 33 ~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 33 GRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4557789999999999999999999998643
No 332
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.46 E-value=0.017 Score=54.08 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=28.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcce-EEec
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK-HFNV 259 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~-~~~~ 259 (625)
+|.+||..+|||||+++.|..+|...|.++- +.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 6899999999999999999999987777766 4444
No 333
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.46 E-value=0.087 Score=52.96 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=33.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
...++++|-+|+||||+|+.+++.+...+..+.+++....
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 3468899999999999999999998666777778877554
No 334
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.45 E-value=0.016 Score=63.68 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=26.6
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.|.-|+|+|.||+|||++|+.|++.++..
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 45679999999999999999999999877
No 335
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.45 E-value=0.15 Score=49.58 Aligned_cols=39 Identities=23% Similarity=0.189 Sum_probs=28.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcc----------cCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRW----------LGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~----------~g~~~~~~~~D 260 (625)
+..+++++|-||+||||++-.++..+-. .+.++-+++.+
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E 79 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLE 79 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEecc
Confidence 4568999999999999999999987642 34556666554
No 336
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=95.45 E-value=0.24 Score=51.44 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=66.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
...|+||++-|+-||||..+.+.|.+.+.-.|+++.-|..-.-. +.. .-.+-...
T Consensus 53 ~~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~e-----------------E~~--------~p~lWRfw 107 (264)
T TIGR03709 53 GRRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAE-----------------ELD--------HDFLWRIH 107 (264)
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHH-----------------HHc--------CchHHHHH
Confidence 35699999999999999999999999887665555444221110 111 11112222
Q ss_pred HHHHcCCcEEEEecCCCcHH-------------HHHHHH------HH-HcCCCeEEEEEEecChHHHHHHHHHhh
Q 006920 300 SWMHEGGQVGIFDATNSSRK-------------RRNMLM------KM-AEGNCKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~-------------~R~~~~------~l-~~~~~~vvfle~~~~~e~i~~R~i~rr 354 (625)
..+-..|.++|+|-+.-... .+..+. .. ...|+.++=+.++.+.++-.+|..++.
T Consensus 108 ~~lP~~G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~ 182 (264)
T TIGR03709 108 KALPERGEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARL 182 (264)
T ss_pred HhCCCCCeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHh
Confidence 22445688888876654432 122222 12 567888777777888777666665553
No 337
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.45 E-value=0.02 Score=57.08 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=33.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.++.++.++|-|||||||+|.+++......|.++.+++.+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4568999999999999999999999886667777788653
No 338
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.45 E-value=0.18 Score=56.31 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=31.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc--CCcceEEechHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKYR 263 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~--g~~~~~~~~D~~R 263 (625)
-++++|-||+|||+++++++..+... +..+..++.+.+.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~ 190 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT 190 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 37889999999999999999998644 6667777776543
No 339
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.44 E-value=0.034 Score=51.33 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
...|+++|.+|+||||+...|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998643
No 340
>PRK10646 ADP-binding protein; Provisional
Probab=95.38 E-value=0.025 Score=53.87 Aligned_cols=39 Identities=18% Similarity=0.105 Sum_probs=29.7
Q ss_pred HHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 210 AVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 210 ~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
++|..... .-+.+.+|+|.|=-|+||||++|.|++.|+.
T Consensus 16 ~l~~~la~-~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 16 DLGARVAK-ACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHHHHHH-hCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 44444431 2234568999999999999999999999975
No 341
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.38 E-value=0.088 Score=56.16 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=32.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.+..++.++|-|||||||+|-.++......|..+.+++..
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E 92 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 92 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence 3567899999999999999999888776667777777653
No 342
>PLN03025 replication factor C subunit; Provisional
Probab=95.37 E-value=0.17 Score=53.94 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=23.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..|. ++++|-||+||||+|+.+++.+...
T Consensus 33 ~~~~-lll~Gp~G~GKTtla~~la~~l~~~ 61 (319)
T PLN03025 33 NMPN-LILSGPPGTGKTTSILALAHELLGP 61 (319)
T ss_pred CCce-EEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3354 5689999999999999999998543
No 343
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=95.37 E-value=0.13 Score=52.77 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=35.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
+.++++.|--|+||||+|..|+.++...|.++..+|.|..
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 4667778999999999999999999888899999999843
No 344
>PHA03132 thymidine kinase; Provisional
Probab=95.36 E-value=2.3 Score=48.83 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=23.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
.++|++-|..|+||||+++.|++++
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999999998
No 345
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=95.35 E-value=0.017 Score=58.28 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
++|.++|+|||||||+|+.+.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~ 23 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN 23 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc
Confidence 47999999999999999999664
No 346
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.34 E-value=0.039 Score=60.70 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=26.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
|.-|+|+|.||+||||+|+.|++.++..
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 6779999999999999999999999876
No 347
>PF05729 NACHT: NACHT domain
Probab=95.33 E-value=0.015 Score=54.39 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+++++|-||+||||+++.++..+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc
Confidence 68999999999999999999988643
No 348
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.30 E-value=0.12 Score=52.70 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=30.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.++.++++.|-||+|||++|.+++...-..|.++.+++.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 3567899999999999999998776532446677777654
No 349
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.29 E-value=0.5 Score=53.45 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=26.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
.+-+.+++++|-+|+||||+|+.+|+.+.+
T Consensus 35 ~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 35 QRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455678999999999999999999999975
No 350
>PRK06620 hypothetical protein; Validated
Probab=95.29 E-value=0.26 Score=49.48 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=22.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
-.++++|-||+||||+++.++...+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 70 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA 70 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC
Confidence 35899999999999999999887653
No 351
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.25 E-value=0.18 Score=49.85 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
+|+++|-+||||||+.+.|...+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 7899999999999999999988863
No 352
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.23 E-value=0.28 Score=56.36 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=27.4
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+-+..++++|-+|+||||+|+.|++.+.+.
T Consensus 35 ~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 35 GKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4557889999999999999999999998754
No 353
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.23 E-value=0.028 Score=54.88 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=36.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH 267 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~ 267 (625)
.+.=++|.|-||+|||++|.+++.++-..|..+.+++..++-..+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 3456999999999999999999998877899999999887765553
No 354
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.23 E-value=0.12 Score=53.55 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=24.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
....+|.++|++|.||||+|+++++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 67889999999999999999999988
No 355
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.22 E-value=0.3 Score=56.35 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=31.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc--cCCcceEEechHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKYR 263 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~--~g~~~~~~~~D~~R 263 (625)
++|+|-+|+|||+++.+++.++.. .+.++.+++.+++-
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~ 356 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT 356 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 899999999999999999998753 46778888876543
No 356
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.2 Score=59.12 Aligned_cols=42 Identities=29% Similarity=0.310 Sum_probs=34.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc-ccC-CcceEEechHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLG-HDTKHFNVGKYR 263 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~-~~g-~~~~~~~~D~~R 263 (625)
++.+|.|+|..|+||||+..+|+..+. ..| .++-++..|.+|
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 468999999999999999999998773 444 466678888776
No 357
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.19 E-value=0.22 Score=55.06 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=61.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHc-ccCCcceEEechH----HHHHH----cCCCCCCcccCCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGK----YRRLK----HGVNQSADFFRADNPEGMEARNEV 290 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~-~~g~~~~~~~~D~----~Rk~~----~g~~~~~~f~~~~~~~~~~~~~~v 290 (625)
-.++.++++.|-||+|||++|-.++..+- ..|..+-+|+.+. +...+ .|.+........-..+.+....
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~-- 268 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLL-- 268 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHH--
Confidence 45577999999999999999999997765 3577787887542 22211 1222111000111111111111
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCc-HHHHHHHHHH-HcC-CCeEEEEE
Q 006920 291 AALAMEDMISWMHEGGQVGIFDATNSS-RKRRNMLMKM-AEG-NCKIIFLE 338 (625)
Q Consensus 291 a~~~l~~~~~~l~~~g~vvIvDatn~~-~~~R~~~~~l-~~~-~~~vvfle 338 (625)
.+...+. +....|.|....+ ..-|..++.+ .++ ++.+++|+
T Consensus 269 ------~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvID 312 (421)
T TIGR03600 269 ------NAVDRLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVD 312 (421)
T ss_pred ------HHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 1222233 2345566655554 4567777877 454 68888885
No 358
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=95.12 E-value=0.057 Score=58.73 Aligned_cols=39 Identities=23% Similarity=0.122 Sum_probs=33.2
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEe
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 258 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~ 258 (625)
..++.+|.++|.|||||||+..+|.+.|...|.++-++-
T Consensus 202 ~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iK 240 (366)
T PRK14489 202 TGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIK 240 (366)
T ss_pred CCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence 345669999999999999999999999988877776664
No 359
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.11 E-value=0.15 Score=54.50 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=31.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEec
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 259 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~ 259 (625)
+..++.++|-|||||||+|-.++......|..+.+++.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 46788999999999999999998877656666767765
No 360
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.10 E-value=0.03 Score=55.40 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=33.4
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.+..++.++|.||||||++|.+++......|.++.+++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4568999999999999999999998876567777778764
No 361
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.10 E-value=0.017 Score=61.47 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=24.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcccC
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWLG 251 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~g 251 (625)
|+|.|.||+||||+++.||+.|++..
T Consensus 67 ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 67 VMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred EEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 89999999999999999999999873
No 362
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.10 E-value=0.19 Score=55.73 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=60.4
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcc-cCCcceEEechH----H-HHHHc---CCCCCCcccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGK----Y-RRLKH---GVNQSADFFRADNPEGMEARNEVA 291 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~-~g~~~~~~~~D~----~-Rk~~~---g~~~~~~f~~~~~~~~~~~~~~va 291 (625)
.++.++++.|-||+|||+++..++...-. .|..+-+|+.+. + ++.+. +.+........-....+..
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~----- 267 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEK----- 267 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHH-----
Confidence 45689999999999999999999987543 466677777653 2 12111 1111100000011111111
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCc-HHHHHHHHHH-HcCCCeEEEEE
Q 006920 292 ALAMEDMISWMHEGGQVGIFDATNSS-RKRRNMLMKM-AEGNCKIIFLE 338 (625)
Q Consensus 292 ~~~l~~~~~~l~~~g~vvIvDatn~~-~~~R~~~~~l-~~~~~~vvfle 338 (625)
+..+...+.+ ....|.|..... ..-+..++.+ .++++.+++|.
T Consensus 268 ---~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID 312 (434)
T TIGR00665 268 ---LTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKREHGLGLIVID 312 (434)
T ss_pred ---HHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 1112222332 344455554444 4577777777 67788888885
No 363
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.15 Score=55.00 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=24.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.-|+|+|.||+|||-+||++|-..+..
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 368999999999999999999988744
No 364
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.04 E-value=0.026 Score=51.76 Aligned_cols=29 Identities=31% Similarity=0.209 Sum_probs=25.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
+...+|+|.|=.||||||++|.+++.|+.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45689999999999999999999999964
No 365
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.00 E-value=0.49 Score=44.85 Aligned_cols=27 Identities=41% Similarity=0.486 Sum_probs=23.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
.+..+++++|-||+||||+-++|++.-
T Consensus 7 nR~~~fIltGgpGaGKTtLL~aLa~~G 33 (183)
T COG3911 7 NRHKRFILTGGPGAGKTTLLAALARAG 33 (183)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHcC
Confidence 344689999999999999999998864
No 366
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.99 E-value=0.49 Score=52.70 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=25.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.|.-++|+|.||+|||++|++++..+...
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~ 244 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSAT 244 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 45568899999999999999999998754
No 367
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.95 E-value=0.068 Score=56.49 Aligned_cols=35 Identities=29% Similarity=0.273 Sum_probs=32.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.+.+|+++|..|||||-+|-.||++++.. +++.|.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~e-----IIs~DS 36 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGE-----IISLDS 36 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCc-----EEecch
Confidence 46789999999999999999999999998 898884
No 368
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.92 E-value=0.3 Score=50.91 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=34.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
++..|+++|.+|+||||+++.|+..+...+..+-+++.|.+|
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 446899999999999999999999886556667778887654
No 369
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.91 E-value=0.02 Score=50.86 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~ 249 (625)
|++.|-||.|||++|+.|++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998753
No 370
>PRK04328 hypothetical protein; Provisional
Probab=94.91 E-value=0.16 Score=52.22 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=30.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
++.++++.|-||+|||++|.+++..--..|.++.+++.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 467899999999999999999876633446777777663
No 371
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.90 E-value=0.33 Score=51.21 Aligned_cols=30 Identities=20% Similarity=0.097 Sum_probs=26.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
...|.+++++|-||+||||+|+.+++.++.
T Consensus 40 ~~~~~~lll~G~~G~GKT~la~~l~~~~~~ 69 (316)
T PHA02544 40 GRIPNMLLHSPSPGTGKTTVAKALCNEVGA 69 (316)
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHhCc
Confidence 455788999999999999999999998753
No 372
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.86 E-value=0.33 Score=53.62 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=23.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+.-++++|-||+||||+|+.|++.++..
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~ 63 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAP 63 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3357789999999999999999987644
No 373
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.85 E-value=0.069 Score=57.77 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=37.5
Q ss_pred HHHHHHhcC-CCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 209 AAVADQMLG-PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 209 ~~la~~~~~-~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
..++..|.. +.-+.|.++.|.|.||+|||.+|+++++.++.. ...++..++
T Consensus 133 ~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~---~i~vsa~eL 184 (413)
T PLN00020 133 VHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIE---PIVMSAGEL 184 (413)
T ss_pred HHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCC---eEEEEHHHh
Confidence 345555542 225789999999999999999999999998765 345555433
No 374
>PTZ00202 tuzin; Provisional
Probab=94.84 E-value=0.34 Score=53.63 Aligned_cols=85 Identities=13% Similarity=0.082 Sum_probs=48.4
Q ss_pred cceeeeccCCcccccccccccccccccccccc-----------cCCCCcccchhHHHHHHHHhc-CCCCCCcEEEEEEcc
Q 006920 164 GLFVDRGVGSPRLVKSASASTFNIDLKLDTET-----------KNSMPAAAGAVAAAAVADQML-GPKEHRHLAIVLVGL 231 (625)
Q Consensus 164 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~-----------~~~~p~~~~~~~~~~la~~~~-~~~~~~p~lIvl~GL 231 (625)
|++.-++-|...|+|..-+.-+.-.++.+..+ +.+++...+-.+-.+..++.. +.....|.+++++|.
T Consensus 215 gv~~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~ 294 (550)
T PTZ00202 215 GVASVFGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGF 294 (550)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECC
Confidence 55666677888888866544333333322222 122222222222222222322 222345679999999
Q ss_pred CCCCHHHHHHHHHHHHc
Q 006920 232 PARGKTFTAAKLTRYLR 248 (625)
Q Consensus 232 PGSGKSTlAr~La~~L~ 248 (625)
+|+||||+++.+...++
T Consensus 295 ~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 295 RGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCCHHHHHHHHHhcCC
Confidence 99999999999998876
No 375
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.82 E-value=0.052 Score=56.75 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=40.2
Q ss_pred HHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 210 AVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 210 ~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
+|.+...+ ...++.+|=++|.||+||||+--+|.+.|...|+++=++..|
T Consensus 39 ~ll~~l~p-~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD 88 (323)
T COG1703 39 ELLRALYP-RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD 88 (323)
T ss_pred HHHHHHhh-cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC
Confidence 34444332 466788999999999999999999999998888888887654
No 376
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.81 E-value=0.32 Score=52.23 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=35.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
.-++|+|-+|+|||++|.+++..+-..|..+.+++.+++-.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~ 224 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE 224 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH
Confidence 56999999999999999999999987788888888876543
No 377
>PF13245 AAA_19: Part of AAA domain
Probab=94.81 E-value=0.031 Score=46.77 Aligned_cols=25 Identities=36% Similarity=0.328 Sum_probs=18.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
.-++++.|.|||||||++..+..++
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3468889999999996655555554
No 378
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.81 E-value=0.048 Score=57.26 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=27.4
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
...+..+|.++|.|||||||+...|.+.|..
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3677899999999999999999999988753
No 379
>PRK05595 replicative DNA helicase; Provisional
Probab=94.81 E-value=0.26 Score=55.05 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=62.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHc-ccCCcceEEechH----H-HHHHc---CCCCCCcccC-CCCHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGK----Y-RRLKH---GVNQSADFFR-ADNPEGMEARNE 289 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~-~~g~~~~~~~~D~----~-Rk~~~---g~~~~~~f~~-~~~~~~~~~~~~ 289 (625)
-.++.++++.|-||.|||++|-.++..+. ..|.++-+|+... + .+.+. +.+.. .+.. .-....+...
T Consensus 198 ~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~a~~~~v~~~-~~~~~~l~~~e~~~~-- 274 (444)
T PRK05595 198 FQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLLCSEANVDML-RLRTGNLEDKDWENI-- 274 (444)
T ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHhcCCCHH-HHhcCCCCHHHHHHH--
Confidence 45567999999999999999999998754 3467777887652 1 12111 11111 1100 0011111111
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEecCCCc-HHHHHHHHHH-HcCCCeEEEEE
Q 006920 290 VAALAMEDMISWMHEGGQVGIFDATNSS-RKRRNMLMKM-AEGNCKIIFLE 338 (625)
Q Consensus 290 va~~~l~~~~~~l~~~g~vvIvDatn~~-~~~R~~~~~l-~~~~~~vvfle 338 (625)
..+...+.+ ....|.|....+ ..-|..++.+ .++++.+++|+
T Consensus 275 ------~~~~~~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvID 318 (444)
T PRK05595 275 ------ARASGPLAA-AKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILID 318 (444)
T ss_pred ------HHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 111222332 345566666665 4577888888 67788888884
No 380
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.78 E-value=0.041 Score=55.21 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=33.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
....++.++|.||+|||++|.+++...-..|.++.+++.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4578999999999999999999998765557777788764
No 381
>PRK05636 replicative DNA helicase; Provisional
Probab=94.77 E-value=0.19 Score=57.02 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=61.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc-ccCCcceEEechH----HH-HHHc---CCCCCCcccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGK----YR-RLKH---GVNQSADFFRADNPEGMEARNEVA 291 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~-~~g~~~~~~~~D~----~R-k~~~---g~~~~~~f~~~~~~~~~~~~~~va 291 (625)
.+..+|++.|-||.|||++|-.++...- ..|..+-+|+... +. +.+. +++........-..+.+.....
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~-- 340 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQ-- 340 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHH--
Confidence 5577999999999999999999987653 2355666776542 22 1111 1111100000111222211111
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCc-HHHHHHHHHH-HcCCCeEEEEE
Q 006920 292 ALAMEDMISWMHEGGQVGIFDATNSS-RKRRNMLMKM-AEGNCKIIFLE 338 (625)
Q Consensus 292 ~~~l~~~~~~l~~~g~vvIvDatn~~-~~~R~~~~~l-~~~~~~vvfle 338 (625)
+...+. .....|.|..+.+ .+-|..++.+ .++++.+++|.
T Consensus 341 ------a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvID 382 (505)
T PRK05636 341 ------RLGKIA-QAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVD 382 (505)
T ss_pred ------HHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 112232 3456577777766 4678888888 67788888884
No 382
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.77 E-value=0.49 Score=50.25 Aligned_cols=107 Identities=13% Similarity=0.087 Sum_probs=65.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 302 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l 302 (625)
+.=++|.|-+|+|||++|.+|+..+-..|..+.++....+-..+.. .+ .. +. ..+.. ..+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~-----~~-~~-~~-----~~~~l--------~~l 215 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN-----SI-SD-GS-----VKEKI--------DAV 215 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH-----HH-hc-Cc-----HHHHH--------HHh
Confidence 4569999999999999999999999888888988887654332211 00 00 00 01111 112
Q ss_pred HcCCcEEEEecCC---CcHHHHHHH-HHHH--c-CCCeEEEEEEecChHHHHHHH
Q 006920 303 HEGGQVGIFDATN---SSRKRRNML-MKMA--E-GNCKIIFLETICNDRDIIERN 350 (625)
Q Consensus 303 ~~~g~vvIvDatn---~~~~~R~~~-~~l~--~-~~~~vvfle~~~~~e~i~~R~ 350 (625)
. .-.++|+|... .+...|+.+ ..+. . .+-...++....+.+++.+..
T Consensus 216 ~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 216 K-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred c-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 2 45677999887 445667544 3332 2 233456666677766666543
No 383
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.71 E-value=0.028 Score=53.81 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=21.9
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
....+.+++++|.+|+|||++.+++.+.+...
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46677899999999999999999999888654
No 384
>PRK08760 replicative DNA helicase; Provisional
Probab=94.70 E-value=0.23 Score=56.05 Aligned_cols=109 Identities=21% Similarity=0.227 Sum_probs=62.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcc-cCCcceEEechH----H-HHHHcC---CCCCCcccC-CCCHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGK----Y-RRLKHG---VNQSADFFR-ADNPEGMEARNE 289 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~-~g~~~~~~~~D~----~-Rk~~~g---~~~~~~f~~-~~~~~~~~~~~~ 289 (625)
-.+..+|++.|-||.|||++|-.+|...-. .|..+-+|+.+. + .+.+.. ++.. .+.. .-..+....
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~~-~i~~g~l~~~e~~~--- 301 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRINAQ-RLRTGALEDEDWAR--- 301 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhhCCCcHH-HHhcCCCCHHHHHH---
Confidence 466789999999999999999999987642 366677777653 2 121111 1111 0110 111111111
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEecCCCc-HHHHHHHHHH-HcCCCeEEEEE
Q 006920 290 VAALAMEDMISWMHEGGQVGIFDATNSS-RKRRNMLMKM-AEGNCKIIFLE 338 (625)
Q Consensus 290 va~~~l~~~~~~l~~~g~vvIvDatn~~-~~~R~~~~~l-~~~~~~vvfle 338 (625)
+..+...+.+ ....|.|....+ ..-|..++.+ .++++.+++|.
T Consensus 302 -----~~~a~~~l~~-~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvID 346 (476)
T PRK08760 302 -----VTGAIKMLKE-TKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVID 346 (476)
T ss_pred -----HHHHHHHHhc-CCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1122223333 345466666665 4577788888 66788888885
No 385
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.70 E-value=0.38 Score=53.73 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=31.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
++++|-||+||||++++++..+...|.++..++.+.+
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f 180 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF 180 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH
Confidence 6788999999999999999998766777777876543
No 386
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.68 E-value=0.063 Score=52.07 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=31.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHc-ccCCcceEEechHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKY 262 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~-~~g~~~~~~~~D~~ 262 (625)
...++++|.+|+|||.+|+.|++.|. ....+...+|...+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence 35789999999999999999999998 34445556666544
No 387
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.66 E-value=0.038 Score=57.69 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=30.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
+|.++|.+||||||++..|++.|...| ++-.+..|
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd 37 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHM 37 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEc
Confidence 689999999999999999999998877 56566543
No 388
>PRK08006 replicative DNA helicase; Provisional
Probab=94.65 E-value=0.32 Score=54.72 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=62.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHc-ccCCcceEEechH----HH-HHHcC---CCCCCccc-CCCCHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGK----YR-RLKHG---VNQSADFF-RADNPEGMEARNE 289 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~-~~g~~~~~~~~D~----~R-k~~~g---~~~~~~f~-~~~~~~~~~~~~~ 289 (625)
-++..+|++.|-||.|||++|-.+|...- ..|..+-+|+..- +. +.+.. .+.. .+. ..-..+.+.....
T Consensus 221 l~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~-~i~~~~l~~~e~~~~~~ 299 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQT-RIRTGQLDDEDWARISG 299 (471)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCCHH-HhhcCCCCHHHHHHHHH
Confidence 45678999999999999999999988754 3466677777652 22 22211 1111 111 1112222222222
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEecCCCcH-HHHHHHHHH-HcC-CCeEEEEE
Q 006920 290 VAALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEG-NCKIIFLE 338 (625)
Q Consensus 290 va~~~l~~~~~~l~~~g~vvIvDatn~~~-~~R~~~~~l-~~~-~~~vvfle 338 (625)
.+.. +.......|.|....+. +-|..++.+ .++ ++.+++|.
T Consensus 300 a~~~--------~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvID 343 (471)
T PRK08006 300 TMGI--------LLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMID 343 (471)
T ss_pred HHHH--------HHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 2222 21134455667666664 577788777 555 57888884
No 389
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.64 E-value=0.03 Score=50.63 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
++.+++++|-||+|||++++.+++.+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 4568999999999999999999998853
No 390
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.63 E-value=1.5 Score=49.20 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=30.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHHc--ccCCcceEEechHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYR 263 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~--~~g~~~~~~~~D~~R 263 (625)
++++|-+|+|||+++++++.++. ..+.++..++.+++.
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 78899999999999999999875 346677777776543
No 391
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.63 E-value=0.14 Score=54.73 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=24.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..|+++|-||+||||+++.|++.++..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~ 189 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTT 189 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 478999999999999999999998755
No 392
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.63 E-value=0.089 Score=59.34 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=26.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..|.-|+|+|.||+|||++|+++|..++..
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 345668999999999999999999999876
No 393
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.63 E-value=0.25 Score=49.59 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=29.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEec
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 259 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~ 259 (625)
.++.++++.|-||+||||+|.+++...-..|..+.+++.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 346789999999999999999987654334556666665
No 394
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.62 E-value=0.11 Score=57.15 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=25.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..|.-|+++|.||+|||++|++++..++..
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 345568999999999999999999998754
No 395
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=94.62 E-value=0.033 Score=55.94 Aligned_cols=38 Identities=24% Similarity=0.136 Sum_probs=34.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
+++++|-+|+||||++..|+..+-..|.++.+++.|--
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~ 38 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPA 38 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 47899999999999999999999888999999998733
No 396
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=94.62 E-value=0.43 Score=49.60 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
-|.++|.+|+||||++.+|....+.
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~ 28 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGA 28 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 4899999999999999999866543
No 397
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=94.54 E-value=0.11 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
+.-|+++|.+|+||||+..+|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 456999999999999999999654
No 398
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.49 E-value=0.096 Score=53.97 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=34.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.+..+++++|.||||||++|.+.+...-..|.++..+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 44568999999999999999999887766688888887753
No 399
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.48 E-value=0.087 Score=58.46 Aligned_cols=26 Identities=42% Similarity=0.565 Sum_probs=22.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
.-|+++|.||+||||+|++|+..+..
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35777999999999999999998853
No 400
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=94.47 E-value=0.35 Score=48.50 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=56.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH---HHHHHcCCCCC--CcccC------CCC--HHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK---YRRLKHGVNQS--ADFFR------ADN--PEGMEARNEV 290 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~---~Rk~~~g~~~~--~~f~~------~~~--~~~~~~~~~v 290 (625)
.|++++|.+|+|||.+|-.||+.++++ +++.|. |.+...|-..+ .++.. .++ ..+.-...+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~p-----vI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~e- 75 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAP-----VISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEE- 75 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--E-----EEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHH-
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCC-----EEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHH-
Confidence 378999999999999999999999999 888874 33333332211 11110 010 011111112
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhhhc
Q 006920 291 AALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQ 356 (625)
Q Consensus 291 a~~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr~~ 356 (625)
+...+-.....+.. +..+|+.+....- .+.++... -..++.........++++..-.+..+|.+
T Consensus 76 a~~~Li~~v~~~~~-~~~~IlEGGSISL-l~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~ 140 (233)
T PF01745_consen 76 AHERLISEVNSYSA-HGGLILEGGSISL-LNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVR 140 (233)
T ss_dssp HHHHHHHHHHTTTT-SSEEEEEE--HHH-HHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc-cCceEEeCchHHH-HHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHH
Confidence 22222222223334 4455886654421 12223332 23566666666677877766655555543
No 401
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.46 E-value=0.033 Score=53.89 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHHc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~ 248 (625)
|+++|-||+||||+.+.+.+.|.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 78999999999999999999994
No 402
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=94.45 E-value=0.087 Score=49.10 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=18.6
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~ 246 (625)
|+++|.+|+||||+..++...
T Consensus 2 i~iiG~~~~GKssli~~~~~~ 22 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLG 22 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 789999999999999988654
No 403
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.45 E-value=0.17 Score=50.70 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=29.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc-CCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~-g~~~~~~~~D 260 (625)
++.++++.|-||+|||++|.+++...-.. |.++.+++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 45689999999999999999977554333 7777777664
No 404
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.45 E-value=0.074 Score=54.75 Aligned_cols=41 Identities=29% Similarity=0.323 Sum_probs=32.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
..+..+|=++|.||+||||+-.+|.+.+...|.++=++..|
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD 66 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD 66 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC
Confidence 45678999999999999999999999998888888888765
No 405
>PRK08506 replicative DNA helicase; Provisional
Probab=94.44 E-value=0.3 Score=55.00 Aligned_cols=110 Identities=12% Similarity=0.117 Sum_probs=62.2
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH-----HHHc---CCCCCCcccCCCCHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR-----RLKH---GVNQSADFFRADNPEGMEARNEVA 291 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R-----k~~~---g~~~~~~f~~~~~~~~~~~~~~va 291 (625)
-.+..+|++.|-||.|||++|-.++...-..|..+-+|+.+.=. +.+. |.+........-....+...
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~---- 264 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERL---- 264 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHH----
Confidence 45567999999999999999999998864456777788765311 2111 11111100011112111111
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCc-HHHHHHHHHH-HcC-CCeEEEEE
Q 006920 292 ALAMEDMISWMHEGGQVGIFDATNSS-RKRRNMLMKM-AEG-NCKIIFLE 338 (625)
Q Consensus 292 ~~~l~~~~~~l~~~g~vvIvDatn~~-~~~R~~~~~l-~~~-~~~vvfle 338 (625)
..+...+.+ ....|.|..+.+ ..-|..++.+ .++ ++.+++|.
T Consensus 265 ----~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvID 309 (472)
T PRK08506 265 ----SDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVID 309 (472)
T ss_pred ----HHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 112222332 345577766655 4577888888 443 57777774
No 406
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.43 E-value=0.73 Score=51.63 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=27.0
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+-|..++++|-||+||||+|+.+++.+...
T Consensus 36 ~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 36 NRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4457789999999999999999999998654
No 407
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.42 E-value=0.088 Score=57.07 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=24.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+-.-.++-|.||+||||+|+.||..++..
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~ 75 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAA 75 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCc
Confidence 33457788999999999999999998755
No 408
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.41 E-value=0.15 Score=56.14 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=25.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.|.-|+|.|.||+|||++|+++|..++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~ 206 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTAT 206 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 45668899999999999999999988755
No 409
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=94.41 E-value=0.056 Score=55.89 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=33.3
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHc-ccCC-cceEEech
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGH-DTKHFNVG 260 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~-~~g~-~~~~~~~D 260 (625)
..+.|++|-++|-||+||||+|+.|+..+. |... .++++-+|
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmD 121 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMD 121 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecc
Confidence 478999999999999999999999999986 3322 25555444
No 410
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=94.38 E-value=0.13 Score=49.07 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
|+++|.+|+||||+...|.......
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~ 26 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDI 26 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCC
Confidence 7889999999999999998775433
No 411
>PRK04195 replication factor C large subunit; Provisional
Probab=94.37 E-value=0.1 Score=58.92 Aligned_cols=28 Identities=36% Similarity=0.485 Sum_probs=25.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+..++++|.||+||||+|+.|++.+++.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~ 66 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWE 66 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 6689999999999999999999998754
No 412
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.37 E-value=0.2 Score=51.85 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=23.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
+...+-++|-+||||||+||.|.+-+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 455789999999999999999988765
No 413
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=94.36 E-value=0.13 Score=49.92 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=21.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
.++..-|+++|.+|+||||+..+|..
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhc
Confidence 35556789999999999999988864
No 414
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=94.36 E-value=0.062 Score=50.11 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.6
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~ 246 (625)
|+++|.+|+||||+..++...
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 789999999999999988654
No 415
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.35 E-value=0.16 Score=52.51 Aligned_cols=42 Identities=26% Similarity=0.256 Sum_probs=36.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
++.=+++.|-||+|||++|.+|+..+-..|+++.++..-++-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~ 145 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLL 145 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 556699999999999999999999998779999999875543
No 416
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.34 E-value=0.16 Score=58.39 Aligned_cols=51 Identities=22% Similarity=0.209 Sum_probs=37.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcc-------cCCcceEEechHHHHHHcCCCCC
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRW-------LGHDTKHFNVGKYRRLKHGVNQS 272 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~-------~g~~~~~~~~D~~Rk~~~g~~~~ 272 (625)
++..+.++|-+||||||+++.|.+.+.. .|.+...++.+.+|+...-..++
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd 411 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQD 411 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccc
Confidence 3456889999999999999999998863 14555566777777765544433
No 417
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=94.32 E-value=0.055 Score=52.57 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=24.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEE
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 257 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~ 257 (625)
+++++|+.||||||+-+.|.+ ....|.++-++
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI 33 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVI 33 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEE
Confidence 689999999999999999987 44445555555
No 418
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=94.31 E-value=0.043 Score=54.19 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=29.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
+-+||-+.|.+.|||||+|+.|.+.++... +++-|++
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~----lIhqDDF 39 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCS----LIHQDDF 39 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCe----eeccccc
Confidence 346888999999999999999999987431 6666654
No 419
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.28 E-value=0.035 Score=51.75 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=18.4
Q ss_pred EEEEccCCCCHHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~ 245 (625)
|+++|.||+||||+..+|..
T Consensus 3 i~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999874
No 420
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=94.27 E-value=0.047 Score=52.30 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=33.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+.++.+-+|+||||+|..||..+...|.++-++|.|-
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 5678899999999999999999998899999999873
No 421
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.27 E-value=0.56 Score=49.68 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=26.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccC--CcceEEech
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHFNVG 260 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g--~~~~~~~~D 260 (625)
.++++|-||+||||+|+.+++.+...+ .+...++..
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 367999999999999999999986442 223455543
No 422
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.22 E-value=0.024 Score=52.32 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=18.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
|+|-|.||.||||+|+.||+.++..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 6889999999999999999998865
No 423
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.037 Score=63.59 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=28.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..++.++.++|.||.|||.+|+.+|+.|+..
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk 465 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRK 465 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCc
Confidence 5677899999999999999999999999876
No 424
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.048 Score=62.81 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=31.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
..++-+++|+|.||.|||++|+.+|+.++.. ...++.+-+|.
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk---fvR~sLGGvrD 388 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRK---FVRISLGGVRD 388 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHhCCC---EEEEecCcccc
Confidence 3445689999999999999999999999866 22345544443
No 425
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=94.21 E-value=0.059 Score=49.30 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.4
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~ 246 (625)
|+++|.||+||||+...|...
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999888543
No 426
>PRK06321 replicative DNA helicase; Provisional
Probab=94.16 E-value=0.37 Score=54.26 Aligned_cols=109 Identities=14% Similarity=0.075 Sum_probs=60.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHc-ccCCcceEEechH----HHHHHcC----CCCCCccc-CCCCHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGK----YRRLKHG----VNQSADFF-RADNPEGMEARNE 289 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~-~~g~~~~~~~~D~----~Rk~~~g----~~~~~~f~-~~~~~~~~~~~~~ 289 (625)
-.+..+|++.|-||.|||++|-.++...- ..|..+-+|+... +...+.. .+.. .+. ..-....+....
T Consensus 223 l~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~~s~v~~~-~i~~~~l~~~e~~~~~- 300 (472)
T PRK06321 223 FSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVESK-KISVGDLSGRDFQRIV- 300 (472)
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhcCCCHH-HhhcCCCCHHHHHHHH-
Confidence 45567999999999999999999998763 2356666776652 2222211 1111 110 111111111111
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEecCCCc-HHHHHHHHHH-HcCCCeEEEEE
Q 006920 290 VAALAMEDMISWMHEGGQVGIFDATNSS-RKRRNMLMKM-AEGNCKIIFLE 338 (625)
Q Consensus 290 va~~~l~~~~~~l~~~g~vvIvDatn~~-~~~R~~~~~l-~~~~~~vvfle 338 (625)
.+...+.+ ....|-|..+.+ ..-|..++.+ .++++.+++|+
T Consensus 301 -------~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvID 343 (472)
T PRK06321 301 -------SVVNEMQE-HTLLIDDQPGLKITDLRARARRMKESYDIQFLIID 343 (472)
T ss_pred -------HHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 11222332 344344555544 4678888888 67788888884
No 427
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=94.16 E-value=0.098 Score=49.72 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.8
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~ 246 (625)
|+++|.+|+||||+..++...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999998754
No 428
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.15 E-value=0.046 Score=61.34 Aligned_cols=43 Identities=30% Similarity=0.333 Sum_probs=33.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc-ccC-CcceEEechHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR-WLG-HDTKHFNVGKYR 263 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~-~~g-~~~~~~~~D~~R 263 (625)
.++.+|.|+|..|+||||++.+|+..+. ..| .++-+++.|.+|
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 3567999999999999999999998874 333 356677777653
No 429
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.15 E-value=0.21 Score=54.20 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=23.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..=++++|-||+||||+++.|++.+...
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3446889999999999999999988654
No 430
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.13 E-value=0.41 Score=53.50 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=32.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
...++++.|-||+||||++.+++..+...|.++.+++..
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 456999999999999999999998876556677777654
No 431
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.12 E-value=0.051 Score=54.04 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=26.2
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.+++.+|.++|++||||||+...|.+.++
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56789999999999999999999988865
No 432
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=94.12 E-value=0.3 Score=45.74 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~ 246 (625)
+|+++|.+|+||||+..+|...
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~ 23 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKT 23 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhc
Confidence 4899999999999999999764
No 433
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=94.10 E-value=0.051 Score=54.05 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=35.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
..++++|.-||||||++..+-.+....|....+++.|---
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAa 43 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAA 43 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHH
Confidence 4588999999999999999999999999999999988543
No 434
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.02 E-value=1.4 Score=52.25 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
-++++|-||+||||+|+.+++.++..
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~~~ 79 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTRAH 79 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 46889999999999999999987644
No 435
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.01 E-value=0.042 Score=60.14 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=28.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEE
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 257 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~ 257 (625)
..=|++.|-||+||||+|++||+.+...|.=++..
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy~~~GkiVKTm 297 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFYASQGKIVKTM 297 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHHHhcCcEEeec
Confidence 33488999999999999999999998776544433
No 436
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.99 E-value=0.22 Score=54.55 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=25.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.++..+.++|-||+||||+++.|++.+...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 355678999999999999999999987543
No 437
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.97 E-value=0.05 Score=57.16 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=23.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
+..++++|.||+||||+|+.++..++.
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445789999999999999999998864
No 438
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.96 E-value=0.46 Score=45.73 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.+.++.++|.+||||||+.+.|+..+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 456899999999999999999998764
No 439
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.95 E-value=0.15 Score=57.77 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=24.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
|.-|+|.|.||+|||++|++++..+...
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4558999999999999999999998754
No 440
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.94 E-value=0.28 Score=49.15 Aligned_cols=39 Identities=18% Similarity=0.099 Sum_probs=30.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
++.++++.|-||+|||++|.+++...-..|..+.+++.+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 367889999999999999999987643346666677653
No 441
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.93 E-value=0.055 Score=56.02 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
|++.|-||+|||++|+.|++.++..
T Consensus 24 vLL~G~~GtGKT~lA~~la~~lg~~ 48 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRDRP 48 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 6689999999999999999987544
No 442
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.91 E-value=1 Score=45.32 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=29.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc--cCCcceEEechHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 262 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~--~g~~~~~~~~D~~ 262 (625)
+++.|-+|+|||++.++++.++.. .+.++..++.++.
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 688999999999999999998753 5677778877654
No 443
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.91 E-value=1.2 Score=49.82 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=29.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc--cCCcceEEechHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 262 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~--~g~~~~~~~~D~~ 262 (625)
++++|-||+|||+++++++.++.. .+.++.+++.+++
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f 171 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 899999999999999999998753 3456667776654
No 444
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.89 E-value=0.38 Score=50.54 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=26.4
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+.|..++++|.||+||||.|..||+.|...
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 456689999999999999999999999743
No 445
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.86 E-value=0.057 Score=62.19 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=27.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
...+.+.+|||.||-||||+|.-+|++-|+.
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYs 353 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYS 353 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCce
Confidence 3455899999999999999999999998765
No 446
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.84 E-value=0.076 Score=47.54 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLT 244 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La 244 (625)
...++.+.|.+||||||+++.|.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 35789999999999999999986
No 447
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.84 E-value=0.39 Score=52.41 Aligned_cols=40 Identities=18% Similarity=0.087 Sum_probs=32.2
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.+..++++.|-||+||||++.+++..+...+.++.+++..
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3456999999999999999999998876656666667654
No 448
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.83 E-value=0.66 Score=55.16 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=25.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.|.-|+|.|.||+|||++|++||..++..
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~ 514 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGAN 514 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 34558889999999999999999998755
No 449
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.83 E-value=1 Score=48.79 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=27.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..-|..++++|.||+||||+|+.+++.+...
T Consensus 36 ~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~ 66 (367)
T PRK14970 36 NHLAQALLFCGPRGVGKTTCARILARKINQP 66 (367)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4556789999999999999999999998764
No 450
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.82 E-value=0.063 Score=50.10 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=18.9
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~ 246 (625)
|+++|.||+||||+..+|...
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988754
No 451
>PRK09354 recA recombinase A; Provisional
Probab=93.82 E-value=0.38 Score=51.94 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=31.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.+..++.++|-|||||||+|-.++......|..+.+++..
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E 97 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 97 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc
Confidence 3567899999999999999999887765556666677643
No 452
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.82 E-value=0.054 Score=59.83 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=24.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.-|+|+|.||+|||++|+.|++.+++.
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVP 135 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 458999999999999999999999876
No 453
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.81 E-value=0.9 Score=46.89 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=32.2
Q ss_pred hhHHHHHHHHhcCCCC-----CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 205 AVAAAAVADQMLGPKE-----HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 205 ~~~~~~la~~~~~~~~-----~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
|.....+-..|+- .+ =-|.-|++.|.||+|||.+|++||-....+
T Consensus 129 AK~kcrli~~yLe-nPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp 178 (368)
T COG1223 129 AKRKCRLIMEYLE-NPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP 178 (368)
T ss_pred HHHHHHHHHHHhh-ChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc
Confidence 3444555555542 11 126779999999999999999999887654
No 454
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=93.80 E-value=0.062 Score=53.38 Aligned_cols=27 Identities=41% Similarity=0.377 Sum_probs=24.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
|+.|.++|.+||||||+.+.|.+.+..
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 578999999999999999999988753
No 455
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=93.79 E-value=0.079 Score=51.24 Aligned_cols=37 Identities=27% Similarity=0.252 Sum_probs=32.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
|.++.+-.|+||||+|..||..|...|.++-++|.|.
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~ 37 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDP 37 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEEST
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCc
Confidence 4678899999999999999999999999999999974
No 456
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=93.78 E-value=0.067 Score=50.98 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=18.9
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~ 246 (625)
|+++|.+|+||||+.+.|...
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~ 22 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE 22 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999998754
No 457
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.15 Score=57.69 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=27.0
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..+..+++.|.||+|||.+|+++|..+++.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~ 303 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSR 303 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCe
Confidence 456689999999999999999999988877
No 458
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=93.75 E-value=0.21 Score=47.96 Aligned_cols=28 Identities=21% Similarity=0.090 Sum_probs=24.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
...+|+++|.+|+||-|+-..+...+..
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~ 31 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAG 31 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhcc
Confidence 4679999999999999998888887753
No 459
>PRK09165 replicative DNA helicase; Provisional
Probab=93.72 E-value=0.47 Score=53.77 Aligned_cols=110 Identities=16% Similarity=0.098 Sum_probs=59.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcc---------------cCCcceEEechH----HHHHH-c---CCCCCCccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW---------------LGHDTKHFNVGK----YRRLK-H---GVNQSADFF 276 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~---------------~g~~~~~~~~D~----~Rk~~-~---g~~~~~~f~ 276 (625)
-.++.+|++.|-||.||||+|-.++...-. .|..+-+|+... +...+ . |++......
T Consensus 214 ~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i~~ 293 (497)
T PRK09165 214 LHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRR 293 (497)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhc
Confidence 456679999999999999999888766531 155666776542 21111 1 221111000
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCCCc-HHHHHHHHHH-HcCCCeEEEEE
Q 006920 277 RADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSS-RKRRNMLMKM-AEGNCKIIFLE 338 (625)
Q Consensus 277 ~~~~~~~~~~~~~va~~~l~~~~~~l~~~g~vvIvDatn~~-~~~R~~~~~l-~~~~~~vvfle 338 (625)
..-..+.+...... ...+. .....|.|....+ ..-|..++.+ .++++.+++|.
T Consensus 294 ~~l~~~e~~~l~~a--------~~~l~-~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvID 348 (497)
T PRK09165 294 GKISEEDFEKLVDA--------SQELQ-KLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVD 348 (497)
T ss_pred CCCCHHHHHHHHHH--------HHHHh-cCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 01111111111111 11222 2345455555554 4577888888 67788888884
No 460
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=93.71 E-value=0.18 Score=57.10 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=24.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.|.=++|+|.||+|||++|+.||..++..
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~~~ 115 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAGVP 115 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34458999999999999999999987654
No 461
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.71 E-value=0.51 Score=52.23 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=35.1
Q ss_pred cCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 216 LGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 216 ~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
..+..++|.+|.+||.-|.||||--.+||-.|-...+++.+..-|.+
T Consensus 371 sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTF 417 (587)
T KOG0781|consen 371 SARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTF 417 (587)
T ss_pred HHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccch
Confidence 33457899999999999999999988888877655555554444433
No 462
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.70 E-value=0.41 Score=46.34 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=23.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
+..++.++|.+||||||+.+.|+..+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999987664
No 463
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=93.70 E-value=0.077 Score=50.75 Aligned_cols=104 Identities=19% Similarity=0.167 Sum_probs=54.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHH----cccCCcceEEec----hHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYL----RWLGHDTKHFNV----GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAME 296 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L----~~~g~~~~~~~~----D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~ 296 (625)
-|.++|.|.+||||+-.+|...- +|+|..++.... +...-.+-..+....+.. ... .++++...+.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~-~s~-----ee~v~~~~l~ 75 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSS-KSE-----EERVARDYLL 75 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSS-SSH-----HHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCC-CCc-----HHHHHHHHHh
Confidence 37899999999999999997654 367776663221 110000111111111111 111 1233333221
Q ss_pred HHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEE
Q 006920 297 DMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLET 339 (625)
Q Consensus 297 ~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~ 339 (625)
.-....-++|+||+++.+.. ....++.+.|.+++++--
T Consensus 76 ----~~~~D~ii~VvDa~~l~r~l-~l~~ql~e~g~P~vvvlN 113 (156)
T PF02421_consen 76 ----SEKPDLIIVVVDATNLERNL-YLTLQLLELGIPVVVVLN 113 (156)
T ss_dssp ----HTSSSEEEEEEEGGGHHHHH-HHHHHHHHTTSSEEEEEE
T ss_pred ----hcCCCEEEEECCCCCHHHHH-HHHHHHHHcCCCEEEEEe
Confidence 00112456789999976543 455566788888877643
No 464
>PF13479 AAA_24: AAA domain
Probab=93.63 E-value=0.13 Score=51.43 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=24.6
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
++.-+++.|-||+||||+|..+ + ++.+|+.|
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~----~----k~l~id~E 32 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL----P----KPLFIDTE 32 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC----C----CeEEEEeC
Confidence 5778999999999999999887 2 33377764
No 465
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.62 E-value=0.82 Score=46.85 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=25.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..|.=++++|-+||||||+.+.|-..+...
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~ 40 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHK 40 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhccc
Confidence 456679999999999999999998887654
No 466
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=93.62 E-value=0.076 Score=54.71 Aligned_cols=37 Identities=22% Similarity=0.109 Sum_probs=34.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+++++|-+|+||||+|..+|..+-..|.++-+++.|-
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~ 38 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP 38 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCC
Confidence 6889999999999999999999988899999999885
No 467
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.61 E-value=0.5 Score=47.19 Aligned_cols=39 Identities=15% Similarity=0.057 Sum_probs=29.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccC------CcceEEec
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG------HDTKHFNV 259 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g------~~~~~~~~ 259 (625)
....++.++|-||+|||++|..++...-..+ ..+.+++.
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 3567999999999999999999987754333 44555554
No 468
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=93.61 E-value=0.11 Score=55.78 Aligned_cols=43 Identities=21% Similarity=0.259 Sum_probs=37.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
.++..+|.++|-+|+||||++..|+..|...|.++-+++.|-.
T Consensus 28 ~~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~ 70 (329)
T cd02033 28 TKKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPK 70 (329)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeec
Confidence 4567788889999999999999999999888999999988743
No 469
>PRK08840 replicative DNA helicase; Provisional
Probab=93.60 E-value=0.62 Score=52.39 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=60.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHc-ccCCcceEEechH----HH-HHHc---CCCCCCcccC-CCCHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGK----YR-RLKH---GVNQSADFFR-ADNPEGMEARNE 289 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~-~~g~~~~~~~~D~----~R-k~~~---g~~~~~~f~~-~~~~~~~~~~~~ 289 (625)
-+++-+|++.|-||.|||++|-.++...- ..|..+-+|+... +. +.+. |.+.. .+.. .-..+.+....
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~~~-~i~~~~l~~~e~~~~~- 291 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVDQT-KIRTGQLDDEDWARIS- 291 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHhhCCCCHH-HHhcCCCCHHHHHHHH-
Confidence 45678999999999999999988887753 2366676777652 21 2221 11111 1111 11122221111
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEecCCCc-HHHHHHHHHH-HcC-CCeEEEEE
Q 006920 290 VAALAMEDMISWMHEGGQVGIFDATNSS-RKRRNMLMKM-AEG-NCKIIFLE 338 (625)
Q Consensus 290 va~~~l~~~~~~l~~~g~vvIvDatn~~-~~~R~~~~~l-~~~-~~~vvfle 338 (625)
.+...+.+.....|.|....+ .+-|..++.+ .++ ++.+++|.
T Consensus 292 -------~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvID 336 (464)
T PRK08840 292 -------STMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVD 336 (464)
T ss_pred -------HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 122233223455566665555 4577888888 554 47777774
No 470
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=93.59 E-value=0.08 Score=50.51 Aligned_cols=37 Identities=30% Similarity=0.263 Sum_probs=33.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+.++.+-.|+||||+|..||..+...|.++-++|.|-
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~ 38 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADL 38 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 5678889999999999999999998899999999873
No 471
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=93.59 E-value=0.057 Score=61.42 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=26.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..+..+++|+|.||+||||+|+.|++.+...
T Consensus 100 ~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 100 EEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 3455799999999999999999999998743
No 472
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=93.58 E-value=0.26 Score=48.17 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~ 246 (625)
-|+++|-+|+||||+..+|...
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~ 25 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQ 25 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHH
Confidence 4889999999999999999864
No 473
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.56 E-value=0.38 Score=48.62 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=31.2
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.++.++++.|-||+||||+|.+++...-..|.++.+++.+
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3466889999999999999999976543357777777764
No 474
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=93.51 E-value=0.09 Score=57.07 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=38.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
...+.+++++|.-.|||||++..|+.++...|.++.++|.|.=
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvG 112 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVG 112 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCC
Confidence 4567799999999999999999999999999999999999843
No 475
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.50 E-value=0.96 Score=47.43 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
++++|-||+||||+++.+++.+...
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5999999999999999999998544
No 476
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.48 E-value=1.9 Score=47.00 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=29.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccC--CcceEEec
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHFNV 259 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g--~~~~~~~~ 259 (625)
...+..++++|.||+||||+++.+++.+...+ .....++.
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~ 93 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC 93 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC
Confidence 34455678999999999999999999885432 34445543
No 477
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.44 E-value=0.063 Score=53.79 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLT 244 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La 244 (625)
.++.+++++|.+||||||+-|.|.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 456799999999999999988875
No 478
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=93.43 E-value=0.13 Score=49.82 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=19.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
+.=|+++|.+|+|||++.+++..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~ 25 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKF 25 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999988854
No 479
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=93.43 E-value=0.079 Score=57.44 Aligned_cols=29 Identities=24% Similarity=0.293 Sum_probs=25.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.|.-++++|.||+|||++|++++..++..
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNAT 183 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 35568999999999999999999998765
No 480
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.38 E-value=0.75 Score=49.82 Aligned_cols=39 Identities=23% Similarity=0.191 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 209 AAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 209 ~~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
..|...+. ..+.|..++++|-+|+||||+|+.+++.+..
T Consensus 33 ~~L~~a~~--~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 33 AFLAQAYR--EGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHH--cCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 33444444 4667889999999999999999999999875
No 481
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=93.37 E-value=0.14 Score=53.08 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=36.2
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
...+.+.++.+-+|.||||+|..||..+...|.++-++|.|-
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~ 142 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANL 142 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 345567777799999999999999999988899999999874
No 482
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=93.36 E-value=1.7 Score=45.34 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~ 249 (625)
|.++|.+++||||++.+|....+.
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~ 25 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGR 25 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCC
Confidence 689999999999999999766553
No 483
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=93.36 E-value=0.16 Score=54.96 Aligned_cols=48 Identities=25% Similarity=0.292 Sum_probs=35.9
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc-------ccCCcceEEechHHHHHHcC
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR-------WLGHDTKHFNVGKYRRLKHG 268 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~-------~~g~~~~~~~~D~~Rk~~~g 268 (625)
+++.+++++|-.||||||+++.|.--.. +.|-.++--+.|+||+....
T Consensus 347 krGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSa 401 (546)
T COG4615 347 KRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSA 401 (546)
T ss_pred ecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHH
Confidence 5667999999999999999999975432 34445555567889986543
No 484
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.34 E-value=1.9 Score=49.77 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=27.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..-+..++++|-+|.||||+|+.|++.+...
T Consensus 35 ~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 35 NKIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 4567889999999999999999999999753
No 485
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.33 E-value=0.14 Score=51.80 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L 247 (625)
+++.|.||.||||-...||+.|
T Consensus 51 liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 51 LIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred eEeeCCCCCchhhHHHHHHHHH
Confidence 7789999999999999999986
No 486
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.32 E-value=1.7 Score=49.64 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=27.4
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
...-|.+++++|.+|+||||+|+.|++.+..
T Consensus 32 ~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 32 NNRLAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred cCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 3556788999999999999999999999864
No 487
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.31 E-value=0.12 Score=52.46 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=29.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
..++++.|.||+||||+|.+++..+-..|.++..++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 45899999999999999977776653456666666554
No 488
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=93.29 E-value=0.12 Score=52.56 Aligned_cols=110 Identities=20% Similarity=0.190 Sum_probs=59.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
...|+||++-|+.||||+.+.+.|.+.|.-.|+++.-|..-.-.+.. .-.+....
T Consensus 28 ~~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE~~-------------------------~p~lwRfw 82 (228)
T PF03976_consen 28 AGIPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEELR-------------------------RPFLWRFW 82 (228)
T ss_dssp HHHEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHHHT-------------------------S-TTHHHH
T ss_pred cCCcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhHcC-------------------------CCcHHHHH
Confidence 45679999999999999999999988777666555555321111110 00111111
Q ss_pred HHHHcCCcEEEEecCCCcHHH-------------HH------HHHHH-HcCCCeEEEEEEecChHHHHHHHHHhh
Q 006920 300 SWMHEGGQVGIFDATNSSRKR-------------RN------MLMKM-AEGNCKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~-------------R~------~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr 354 (625)
..|-..|.++|+|.+.-.... .. .+..+ ...|+.++=+.++.+.++-.+|..++.
T Consensus 83 ~~lP~~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~ 157 (228)
T PF03976_consen 83 RALPARGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKERE 157 (228)
T ss_dssp TTS--TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHH
T ss_pred HhCCCCCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHh
Confidence 123346777788766544321 11 11122 557877766667778766666665554
No 489
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.27 E-value=0.073 Score=56.84 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=24.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+-.++++|.||+||||+|+.+++.+++.
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~ 78 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVN 78 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCC
Confidence 4467889999999999999999998764
No 490
>PRK06851 hypothetical protein; Provisional
Probab=93.25 E-value=0.099 Score=56.73 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=31.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEE
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 257 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~ 257 (625)
...+++|.|.||+||||+.++|.+.+...|.++..+
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~ 64 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFL 64 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 457899999999999999999999997667776665
No 491
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.24 E-value=0.14 Score=61.17 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=25.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+..++|+|.||+||||+|+.||+.++..
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~ 374 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRK 374 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3479999999999999999999999755
No 492
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.22 E-value=0.81 Score=44.14 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=23.6
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.+.++.++|.+||||||+.+.|+..+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 356799999999999999999998764
No 493
>PRK05748 replicative DNA helicase; Provisional
Probab=93.16 E-value=0.67 Score=51.79 Aligned_cols=110 Identities=13% Similarity=0.131 Sum_probs=60.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHc-ccCCcceEEechH----HH-HHHcCCCC-CC-ccc-CCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGK----YR-RLKHGVNQ-SA-DFF-RADNPEGMEARNEV 290 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~-~~g~~~~~~~~D~----~R-k~~~g~~~-~~-~f~-~~~~~~~~~~~~~v 290 (625)
-.++.+|++.|-||.|||++|-.++...- ..|..+-+|+... +. +.+..... .. .+. ..-....+...
T Consensus 200 ~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~--- 276 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKL--- 276 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHH---
Confidence 35667999999999999999999998754 2366777777542 22 22211111 10 010 01111111111
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCc-HHHHHHHHHH-HcC-CCeEEEEE
Q 006920 291 AALAMEDMISWMHEGGQVGIFDATNSS-RKRRNMLMKM-AEG-NCKIIFLE 338 (625)
Q Consensus 291 a~~~l~~~~~~l~~~g~vvIvDatn~~-~~~R~~~~~l-~~~-~~~vvfle 338 (625)
..+...+.+ ....|.|..+.+ ..-|..++.+ .++ ++++++|+
T Consensus 277 -----~~a~~~l~~-~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvID 321 (448)
T PRK05748 277 -----TIAMGSLSD-APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILID 321 (448)
T ss_pred -----HHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 112222332 345455555555 4577788888 565 68888885
No 494
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.16 E-value=0.11 Score=50.07 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=31.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEE
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 257 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~ 257 (625)
+.|+-++|..+|||||+..+|.+.|...|+++-.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~i 36 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATV 36 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEE
Confidence 35889999999999999999999999888777666
No 495
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=93.14 E-value=1.1 Score=45.58 Aligned_cols=24 Identities=21% Similarity=0.044 Sum_probs=21.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~ 249 (625)
|.++|.+|+||||++.+|....+.
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~ 25 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGA 25 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCC
Confidence 789999999999999999877553
No 496
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=93.08 E-value=0.16 Score=48.52 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=19.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~ 245 (625)
.=|+++|.+|+||||+.++|..
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~ 31 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKL 31 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHcc
Confidence 4588999999999999998853
No 497
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=93.06 E-value=1.6 Score=44.77 Aligned_cols=46 Identities=28% Similarity=0.368 Sum_probs=36.6
Q ss_pred EEEEEccC-CCCHHHHHHHHHHHHcccCCcceEEech--HHHHHHcCCC
Q 006920 225 AIVLVGLP-ARGKTFTAAKLTRYLRWLGHDTKHFNVG--KYRRLKHGVN 270 (625)
Q Consensus 225 lIvl~GLP-GSGKSTlAr~La~~L~~~g~~~~~~~~D--~~Rk~~~g~~ 270 (625)
+|.++|.- |.||||++..||-.|...|.++..+|.| ..-+..+|++
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~ 51 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLP 51 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCC
Confidence 57777765 7999999999999999999999998877 3334455543
No 498
>CHL00175 minD septum-site determining protein; Validated
Probab=93.06 E-value=0.12 Score=53.64 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=35.7
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
....+.++.|-.|+||||+|..||..|...|.++-++|.|-
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34567777789999999999999999998899999999884
No 499
>PTZ00369 Ras-like protein; Provisional
Probab=93.05 E-value=0.1 Score=50.82 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=18.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~ 245 (625)
.=|+++|.+|+||||+..++..
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~ 27 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQ 27 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3478899999999999888875
No 500
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.05 E-value=0.077 Score=51.87 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
+..++++|-+||||||+.+.|...+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 56899999999999999999998876
Done!