Query 006920
Match_columns 625
No_of_seqs 425 out of 3191
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 12:28:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2axn_A 6-phosphofructo-2-kinas 100.0 1.7E-67 5.7E-72 589.4 42.7 395 220-623 32-434 (520)
2 1bif_A 6-phosphofructo-2-kinas 100.0 7.6E-66 2.6E-70 570.1 42.9 395 220-623 36-437 (469)
3 1h2e_A Phosphatase, YHFR; hydr 100.0 1E-34 3.5E-39 287.0 19.8 188 432-623 2-197 (207)
4 2a6p_A Possible phosphoglycera 100.0 3.4E-34 1.2E-38 283.7 19.9 190 424-622 3-197 (208)
5 1fzt_A Phosphoglycerate mutase 100.0 2.5E-34 8.5E-39 284.7 17.1 188 425-615 1-201 (211)
6 3kkk_A Phosphoglycerate mutase 100.0 6.3E-33 2.2E-37 282.6 16.9 192 426-619 6-234 (258)
7 3hjg_A Putative alpha-ribazole 100.0 6.6E-33 2.3E-37 275.4 15.2 187 428-622 2-197 (213)
8 3gp3_A 2,3-bisphosphoglycerate 100.0 2.9E-32 9.8E-37 277.8 18.7 188 428-617 6-230 (257)
9 1e58_A Phosphoglycerate mutase 100.0 2.1E-32 7.2E-37 277.5 17.6 182 431-614 2-220 (249)
10 4emb_A 2,3-bisphosphoglycerate 100.0 2.3E-32 7.9E-37 281.4 18.0 192 430-623 26-254 (274)
11 3d8h_A Glycolytic phosphoglyce 100.0 6.1E-32 2.1E-36 277.4 20.3 186 431-618 20-242 (267)
12 2hhj_A Bisphosphoglycerate mut 100.0 4.1E-32 1.4E-36 278.7 17.9 183 429-613 1-224 (267)
13 1qhf_A Protein (phosphoglycera 100.0 5.9E-32 2E-36 272.7 17.0 184 432-618 1-221 (240)
14 1yfk_A Phosphoglycerate mutase 100.0 9.3E-32 3.2E-36 275.2 17.7 184 429-614 1-223 (262)
15 4eo9_A 2,3-bisphosphoglycerate 100.0 4E-32 1.4E-36 278.9 14.6 185 431-617 27-246 (268)
16 2qni_A AGR_C_517P, uncharacter 100.0 2.6E-31 8.8E-36 265.3 18.8 178 426-613 16-199 (219)
17 1rii_A 2,3-bisphosphoglycerate 100.0 9.9E-32 3.4E-36 275.9 15.5 182 431-614 4-220 (265)
18 3r7a_A Phosphoglycerate mutase 100.0 4.7E-31 1.6E-35 265.4 14.2 183 430-622 12-223 (237)
19 1v37_A Phosphoglycerate mutase 100.0 2.6E-31 8.7E-36 256.6 11.0 164 432-617 1-166 (177)
20 3e9c_A ZGC:56074; histidine ph 100.0 1.9E-30 6.3E-35 266.0 14.4 186 429-622 1-245 (265)
21 3f3k_A Uncharacterized protein 100.0 7.2E-30 2.5E-34 261.6 12.7 186 428-618 2-249 (265)
22 3dcy_A Regulator protein; OMIM 100.0 1.3E-29 4.4E-34 261.1 13.3 179 426-612 3-248 (275)
23 3d4i_A STS-2 protein; PGM, 2H- 100.0 2.4E-29 8.2E-34 258.4 13.4 188 428-620 6-252 (273)
24 3c7t_A Ecdysteroid-phosphate p 100.0 1.1E-28 3.8E-33 252.2 16.9 185 429-619 2-241 (263)
25 3mbk_A Ubiquitin-associated an 99.9 9E-28 3.1E-32 245.6 10.6 164 452-619 54-242 (264)
26 3mxo_A Serine/threonine-protei 99.9 1.3E-26 4.6E-31 227.6 17.7 173 427-623 6-190 (202)
27 3eoz_A Putative phosphoglycera 99.9 3.5E-27 1.2E-31 234.3 9.2 173 429-622 19-201 (214)
28 1ujc_A Phosphohistidine phosph 99.9 8.7E-23 3E-27 193.7 18.9 145 432-622 1-150 (161)
29 2rfl_A Putative phosphohistidi 99.9 2.9E-22 9.8E-27 192.3 11.3 137 431-613 8-152 (173)
30 3fjy_A Probable MUTT1 protein; 99.8 9.7E-19 3.3E-23 187.0 15.6 159 427-622 178-349 (364)
31 3f2i_A ALR0221 protein; alpha- 99.8 3.7E-18 1.3E-22 163.9 14.1 144 432-613 1-144 (172)
32 4hbz_A Putative phosphohistidi 99.7 9E-17 3.1E-21 156.1 12.5 137 430-612 18-165 (186)
33 1ly1_A Polynucleotide kinase; 99.5 2E-13 6.7E-18 129.4 13.0 120 223-354 2-127 (181)
34 2rhm_A Putative kinase; P-loop 99.5 1.2E-12 4.2E-17 125.5 18.5 160 221-399 3-167 (193)
35 3zvl_A Bifunctional polynucleo 99.4 1E-12 3.6E-17 142.7 14.1 138 220-399 255-396 (416)
36 3a4m_A L-seryl-tRNA(SEC) kinas 99.4 2.9E-12 1E-16 130.3 16.3 117 222-353 3-120 (260)
37 1ltq_A Polynucleotide kinase; 99.4 9.5E-12 3.3E-16 128.3 17.7 119 223-354 2-127 (301)
38 1m8p_A Sulfate adenylyltransfe 99.3 9.8E-12 3.3E-16 140.2 15.3 144 195-350 368-513 (573)
39 2yvu_A Probable adenylyl-sulfa 99.3 1.2E-11 4.3E-16 118.5 13.5 120 220-350 10-130 (186)
40 1gvn_B Zeta; postsegregational 99.3 2.9E-11 1E-15 124.9 14.6 176 220-411 30-214 (287)
41 1qhx_A CPT, protein (chloramph 99.3 4E-11 1.4E-15 113.6 13.4 123 223-353 3-133 (178)
42 2gks_A Bifunctional SAT/APS ki 99.2 2.8E-11 9.6E-16 135.8 13.4 145 194-350 343-487 (546)
43 3t61_A Gluconokinase; PSI-biol 99.2 1.2E-10 4.2E-15 113.1 14.5 140 222-399 17-162 (202)
44 2vli_A Antibiotic resistance p 99.2 6.9E-11 2.4E-15 112.3 11.7 116 222-353 4-125 (183)
45 1x6v_B Bifunctional 3'-phospho 99.2 1E-10 3.4E-15 132.5 13.8 121 220-351 49-170 (630)
46 1m7g_A Adenylylsulfate kinase; 99.2 1.4E-10 4.7E-15 113.8 12.7 119 220-349 22-148 (211)
47 1tev_A UMP-CMP kinase; ploop, 99.2 5.7E-10 2E-14 106.5 16.5 164 222-399 2-177 (196)
48 3trf_A Shikimate kinase, SK; a 99.2 9.5E-11 3.3E-15 111.8 10.8 140 223-383 5-148 (185)
49 2cdn_A Adenylate kinase; phosp 99.2 2.9E-11 9.8E-16 117.4 6.9 159 220-399 17-184 (201)
50 2p5t_B PEZT; postsegregational 99.2 8.4E-11 2.9E-15 118.9 10.6 127 219-354 28-158 (253)
51 3uie_A Adenylyl-sulfate kinase 99.2 1.8E-10 6E-15 112.1 12.5 119 220-350 22-140 (200)
52 3vaa_A Shikimate kinase, SK; s 99.1 5.3E-10 1.8E-14 108.6 13.8 134 222-374 24-157 (199)
53 4eun_A Thermoresistant glucoki 99.1 4.7E-10 1.6E-14 109.0 11.4 113 221-353 27-145 (200)
54 1knq_A Gluconate kinase; ALFA/ 99.1 1.1E-09 3.9E-14 103.5 13.0 113 221-353 6-124 (175)
55 1ukz_A Uridylate kinase; trans 99.1 9.7E-09 3.3E-13 99.4 19.7 125 220-354 12-142 (203)
56 1qf9_A UMP/CMP kinase, protein 99.1 6.9E-09 2.4E-13 98.8 18.4 121 222-354 5-132 (194)
57 2c95_A Adenylate kinase 1; tra 99.0 4.4E-09 1.5E-13 100.8 16.2 161 221-399 7-176 (196)
58 2bwj_A Adenylate kinase 5; pho 99.0 3.5E-09 1.2E-13 101.7 15.5 160 222-399 11-179 (199)
59 2iyv_A Shikimate kinase, SK; t 99.0 5.1E-10 1.7E-14 106.8 9.4 134 225-381 4-140 (184)
60 3tlx_A Adenylate kinase 2; str 99.0 1E-09 3.5E-14 110.4 11.8 174 207-399 14-226 (243)
61 3umf_A Adenylate kinase; rossm 99.0 4.6E-09 1.6E-13 104.2 16.2 158 218-399 24-196 (217)
62 2pez_A Bifunctional 3'-phospho 99.0 2.5E-09 8.4E-14 101.7 13.5 119 221-350 3-122 (179)
63 3cm0_A Adenylate kinase; ATP-b 99.0 5E-10 1.7E-14 106.8 8.2 119 221-354 2-127 (186)
64 3lw7_A Adenylate kinase relate 99.0 2.9E-09 9.9E-14 99.3 12.9 117 224-353 2-122 (179)
65 1aky_A Adenylate kinase; ATP:A 99.0 2.2E-09 7.7E-14 105.6 12.6 124 221-354 2-133 (220)
66 3sr0_A Adenylate kinase; phosp 99.0 6.6E-09 2.2E-13 102.2 14.5 157 224-399 1-187 (206)
67 3be4_A Adenylate kinase; malar 99.0 8.6E-09 2.9E-13 101.4 15.4 120 222-354 4-133 (217)
68 3fb4_A Adenylate kinase; psych 98.9 7.5E-10 2.6E-14 108.4 6.4 160 225-399 2-197 (216)
69 3dl0_A Adenylate kinase; phosp 98.9 4.8E-10 1.6E-14 109.9 4.1 165 225-399 2-197 (216)
70 2pt5_A Shikimate kinase, SK; a 98.9 3.9E-09 1.3E-13 98.9 8.8 135 224-381 1-137 (168)
71 1e6c_A Shikimate kinase; phosp 98.9 1.8E-08 6.2E-13 94.6 13.5 106 225-351 4-112 (173)
72 1via_A Shikimate kinase; struc 98.8 3.1E-09 1.1E-13 100.7 6.8 134 225-382 6-139 (175)
73 3cr8_A Sulfate adenylyltranfer 98.8 1.5E-08 5E-13 113.7 12.9 147 192-350 338-486 (552)
74 3nwj_A ATSK2; P loop, shikimat 98.8 9.6E-09 3.3E-13 104.0 10.1 142 223-383 48-199 (250)
75 1zuh_A Shikimate kinase; alpha 98.8 8.8E-09 3E-13 96.7 9.0 41 224-269 8-48 (168)
76 1nks_A Adenylate kinase; therm 98.8 1.6E-08 5.6E-13 96.2 10.7 123 224-353 2-136 (194)
77 2xb4_A Adenylate kinase; ATP-b 98.8 5.8E-08 2E-12 96.0 14.6 119 224-354 1-127 (223)
78 3kb2_A SPBC2 prophage-derived 98.8 8.2E-08 2.8E-12 89.7 14.2 35 225-264 3-37 (173)
79 1zd8_A GTP:AMP phosphotransfer 98.7 1.1E-08 3.8E-13 101.1 7.6 165 220-399 4-198 (227)
80 1kht_A Adenylate kinase; phosp 98.7 4.2E-08 1.4E-12 93.3 10.9 43 223-265 3-46 (192)
81 1kag_A SKI, shikimate kinase I 98.7 8.9E-08 3.1E-12 89.9 13.0 137 223-382 4-145 (173)
82 3fdi_A Uncharacterized protein 98.7 3E-08 1E-12 96.9 9.6 150 223-399 6-180 (201)
83 1ak2_A Adenylate kinase isoenz 98.7 6E-08 2.1E-12 96.4 11.8 123 220-354 13-144 (233)
84 2ze6_A Isopentenyl transferase 98.7 1.9E-07 6.4E-12 94.4 14.4 35 224-263 2-36 (253)
85 3hdt_A Putative kinase; struct 98.6 7.4E-07 2.5E-11 88.6 16.7 161 222-399 13-200 (223)
86 2plr_A DTMP kinase, probable t 98.6 9.9E-07 3.4E-11 85.1 16.8 30 222-251 3-32 (213)
87 1nn5_A Similar to deoxythymidy 98.6 8E-07 2.7E-11 86.1 15.1 39 220-258 6-44 (215)
88 1e4v_A Adenylate kinase; trans 98.6 7.1E-08 2.4E-12 94.4 7.6 35 225-264 2-37 (214)
89 3iij_A Coilin-interacting nucl 98.5 1.5E-07 5.2E-12 89.2 8.7 42 220-266 8-49 (180)
90 2bdt_A BH3686; alpha-beta prot 98.5 6.4E-07 2.2E-11 85.6 12.4 117 223-352 2-121 (189)
91 3gmt_A Adenylate kinase; ssgci 98.5 9.4E-07 3.2E-11 88.2 13.0 153 221-389 6-187 (230)
92 1g8f_A Sulfate adenylyltransfe 98.5 1.3E-07 4.5E-12 104.8 7.3 70 192-261 364-435 (511)
93 2pbr_A DTMP kinase, thymidylat 98.5 3.4E-06 1.2E-10 80.1 16.1 35 224-260 1-35 (195)
94 1zak_A Adenylate kinase; ATP:A 98.4 7.4E-07 2.5E-11 87.5 11.1 36 222-262 4-39 (222)
95 2f6r_A COA synthase, bifunctio 98.4 2.8E-06 9.5E-11 87.1 15.4 39 220-264 72-110 (281)
96 1y63_A LMAJ004144AAA protein; 98.4 8.1E-07 2.8E-11 84.9 10.4 41 220-265 7-48 (184)
97 2wwf_A Thymidilate kinase, put 98.4 6E-07 2E-11 87.0 9.2 39 220-258 7-45 (212)
98 2grj_A Dephospho-COA kinase; T 98.4 1.4E-06 4.6E-11 84.6 11.4 41 220-265 9-49 (192)
99 4eaq_A DTMP kinase, thymidylat 98.4 4E-06 1.4E-10 83.4 15.1 35 220-255 23-57 (229)
100 1uj2_A Uridine-cytidine kinase 98.4 1.3E-06 4.4E-11 87.8 11.0 44 220-263 19-67 (252)
101 2qor_A Guanylate kinase; phosp 98.4 5.9E-07 2E-11 87.2 8.1 29 220-248 9-37 (204)
102 3r20_A Cytidylate kinase; stru 98.4 8E-07 2.8E-11 88.9 9.1 39 221-264 7-45 (233)
103 1vht_A Dephospho-COA kinase; s 98.4 4.1E-06 1.4E-10 81.8 14.0 39 221-265 2-40 (218)
104 3ake_A Cytidylate kinase; CMP 98.4 8.6E-06 3E-10 78.3 16.1 36 225-265 4-39 (208)
105 2z0h_A DTMP kinase, thymidylat 98.3 3E-06 1E-10 80.9 12.2 31 224-254 1-31 (197)
106 3lv8_A DTMP kinase, thymidylat 98.3 1.4E-05 4.8E-10 80.0 17.2 39 219-257 23-62 (236)
107 4tmk_A Protein (thymidylate ki 98.3 1.9E-05 6.6E-10 77.8 17.1 35 223-257 3-38 (213)
108 1cke_A CK, MSSA, protein (cyti 98.3 1.1E-05 3.7E-10 78.9 14.8 37 223-264 5-41 (227)
109 2jaq_A Deoxyguanosine kinase; 98.3 2E-06 6.8E-11 82.4 8.7 26 225-250 2-27 (205)
110 4edh_A DTMP kinase, thymidylat 98.2 1.7E-05 5.6E-10 78.2 15.2 37 222-258 5-41 (213)
111 3v9p_A DTMP kinase, thymidylat 98.2 5.9E-06 2E-10 82.3 11.9 39 219-257 21-63 (227)
112 1uf9_A TT1252 protein; P-loop, 98.2 4.6E-06 1.6E-10 79.9 10.7 41 220-266 5-45 (203)
113 4gp7_A Metallophosphoesterase; 98.2 1.5E-05 5.1E-10 75.3 14.0 113 222-353 8-121 (171)
114 4i1u_A Dephospho-COA kinase; s 98.2 4E-05 1.4E-09 75.3 16.7 119 222-354 8-153 (210)
115 2h92_A Cytidylate kinase; ross 98.2 2E-05 6.7E-10 76.8 14.5 38 222-264 2-39 (219)
116 1jjv_A Dephospho-COA kinase; P 98.2 2.3E-05 7.7E-10 75.7 14.4 36 224-265 3-38 (206)
117 1zp6_A Hypothetical protein AT 98.2 6E-06 2E-10 78.6 10.0 121 220-353 6-126 (191)
118 1q3t_A Cytidylate kinase; nucl 98.2 5.5E-05 1.9E-09 74.9 17.3 39 221-264 14-52 (236)
119 4e22_A Cytidylate kinase; P-lo 98.1 7.5E-05 2.6E-09 75.0 16.7 39 221-264 25-63 (252)
120 3a8t_A Adenylate isopentenyltr 98.1 1.9E-05 6.5E-10 83.0 12.3 38 220-262 37-74 (339)
121 2if2_A Dephospho-COA kinase; a 98.1 8.9E-06 3E-10 78.4 8.6 36 225-266 3-38 (204)
122 1gtv_A TMK, thymidylate kinase 98.0 2.1E-06 7.2E-11 83.2 4.1 125 224-354 1-154 (214)
123 2bbw_A Adenylate kinase 4, AK4 98.0 4.4E-05 1.5E-09 76.1 13.6 39 220-263 24-62 (246)
124 3hjn_A DTMP kinase, thymidylat 97.9 0.00014 4.6E-09 70.6 14.3 34 224-257 1-34 (197)
125 2v54_A DTMP kinase, thymidylat 97.9 9E-06 3.1E-10 78.0 5.1 26 222-247 3-28 (204)
126 4hlc_A DTMP kinase, thymidylat 97.9 0.00091 3.1E-08 65.2 19.1 33 224-257 3-35 (205)
127 3ld9_A DTMP kinase, thymidylat 97.8 0.00053 1.8E-08 67.9 16.6 37 220-256 18-55 (223)
128 3tr0_A Guanylate kinase, GMP k 97.8 4.8E-05 1.6E-09 72.9 8.7 28 221-248 5-32 (205)
129 2qt1_A Nicotinamide riboside k 97.8 4.6E-05 1.6E-09 73.7 8.4 38 220-262 18-56 (207)
130 3a00_A Guanylate kinase, GMP k 97.7 2.8E-05 9.7E-10 74.2 5.0 25 224-248 2-26 (186)
131 3tau_A Guanylate kinase, GMP k 97.6 2E-05 6.8E-10 76.8 3.2 28 221-248 6-33 (208)
132 3crm_A TRNA delta(2)-isopenten 97.6 0.0001 3.6E-09 77.0 8.6 35 223-262 5-39 (323)
133 1p5z_B DCK, deoxycytidine kina 97.5 0.00043 1.5E-08 69.6 11.7 29 220-248 21-49 (263)
134 3ch4_B Pmkase, phosphomevalona 97.5 0.00082 2.8E-08 65.5 13.0 124 221-349 9-143 (202)
135 1rz3_A Hypothetical protein rb 97.4 0.00024 8.2E-09 68.6 7.1 53 211-263 10-62 (201)
136 3dm5_A SRP54, signal recogniti 97.3 0.00061 2.1E-08 74.2 10.4 43 221-263 98-140 (443)
137 2j41_A Guanylate kinase; GMP, 97.3 0.00046 1.6E-08 66.0 8.3 26 222-247 5-30 (207)
138 1ex7_A Guanylate kinase; subst 97.3 0.00079 2.7E-08 64.8 9.6 23 226-248 4-26 (186)
139 1a7j_A Phosphoribulokinase; tr 97.2 0.00012 4.2E-09 75.3 3.3 41 222-262 4-44 (290)
140 1kgd_A CASK, peripheral plasma 97.2 5.6E-05 1.9E-09 71.8 0.6 27 222-248 4-30 (180)
141 1vma_A Cell division protein F 97.2 0.0015 5.1E-08 67.8 11.0 43 221-263 102-144 (306)
142 3kl4_A SRP54, signal recogniti 97.2 0.0014 4.8E-08 71.2 11.2 43 221-263 95-137 (433)
143 3d3q_A TRNA delta(2)-isopenten 97.2 0.00092 3.1E-08 70.3 8.9 35 223-262 7-41 (340)
144 3exa_A TRNA delta(2)-isopenten 97.1 0.0009 3.1E-08 69.6 7.8 36 222-262 2-37 (322)
145 3foz_A TRNA delta(2)-isopenten 97.0 0.00092 3.2E-08 69.4 7.2 37 220-261 7-43 (316)
146 2xxa_A Signal recognition part 97.0 0.0066 2.2E-07 65.9 13.8 42 221-262 98-140 (433)
147 1s96_A Guanylate kinase, GMP k 96.9 0.0045 1.5E-07 60.9 11.1 28 221-248 14-41 (219)
148 3t15_A Ribulose bisphosphate c 96.9 0.004 1.4E-07 63.8 10.5 51 209-262 21-72 (293)
149 3ec2_A DNA replication protein 96.8 0.0036 1.2E-07 58.7 9.3 44 221-264 36-80 (180)
150 2j37_W Signal recognition part 96.8 0.0044 1.5E-07 68.6 11.3 42 221-262 99-140 (504)
151 3tmk_A Thymidylate kinase; pho 96.8 0.0034 1.2E-07 61.7 9.2 29 221-249 3-31 (216)
152 3c8u_A Fructokinase; YP_612366 96.8 0.0017 5.8E-08 62.8 6.7 51 210-261 10-60 (208)
153 1zu4_A FTSY; GTPase, signal re 96.8 0.006 2.1E-07 63.6 11.2 43 221-263 103-145 (320)
154 3eph_A TRNA isopentenyltransfe 96.8 0.0011 3.7E-08 71.2 5.4 34 223-261 2-35 (409)
155 1odf_A YGR205W, hypothetical 3 96.7 0.0018 6.2E-08 66.6 6.2 44 219-262 27-73 (290)
156 2yhs_A FTSY, cell division pro 96.7 0.0036 1.2E-07 68.9 8.7 42 221-262 291-332 (503)
157 1j8m_F SRP54, signal recogniti 96.6 0.013 4.3E-07 60.4 11.9 39 223-261 98-136 (297)
158 3asz_A Uridine kinase; cytidin 96.5 0.0018 6.1E-08 62.4 4.8 36 221-261 4-41 (211)
159 2ocp_A DGK, deoxyguanosine kin 96.5 0.0013 4.4E-08 65.1 3.9 27 222-248 1-27 (241)
160 3lnc_A Guanylate kinase, GMP k 96.5 0.0013 4.3E-08 64.7 3.6 27 221-247 25-52 (231)
161 2ffh_A Protein (FFH); SRP54, s 96.5 0.011 3.7E-07 64.1 10.8 42 222-263 97-138 (425)
162 1jbk_A CLPB protein; beta barr 96.5 0.009 3.1E-07 55.1 9.0 28 222-249 42-69 (195)
163 3ney_A 55 kDa erythrocyte memb 96.4 0.0016 5.5E-08 63.2 3.7 28 221-248 17-44 (197)
164 3syl_A Protein CBBX; photosynt 96.4 0.014 4.8E-07 59.3 11.0 31 221-251 65-95 (309)
165 3e70_C DPA, signal recognition 96.4 0.0079 2.7E-07 62.9 9.0 41 221-261 127-167 (328)
166 3tqc_A Pantothenate kinase; bi 96.4 0.0038 1.3E-07 65.1 6.4 43 220-262 89-133 (321)
167 1u94_A RECA protein, recombina 96.3 0.019 6.5E-07 60.7 11.4 49 222-270 62-114 (356)
168 1xjc_A MOBB protein homolog; s 96.3 0.003 1E-07 59.8 4.6 38 223-260 4-41 (169)
169 1yrb_A ATP(GTP)binding protein 96.2 0.0048 1.7E-07 61.2 5.8 40 220-260 11-50 (262)
170 1sq5_A Pantothenate kinase; P- 96.2 0.0054 1.8E-07 63.3 6.2 42 220-261 77-120 (308)
171 2cvh_A DNA repair and recombin 96.2 0.015 5E-07 55.8 8.9 36 222-260 19-54 (220)
172 3bos_A Putative DNA replicatio 96.1 0.0056 1.9E-07 59.2 5.8 41 222-262 51-91 (242)
173 2p65_A Hypothetical protein PF 96.1 0.0074 2.5E-07 55.8 6.4 28 222-249 42-69 (187)
174 4a1f_A DNAB helicase, replicat 96.1 0.024 8.2E-07 59.5 10.9 110 221-339 44-164 (338)
175 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.017 5.9E-07 57.0 9.1 29 222-250 38-66 (262)
176 2q6t_A DNAB replication FORK h 96.0 0.068 2.3E-06 57.9 14.2 110 221-339 198-318 (444)
177 3h4m_A Proteasome-activating n 96.0 0.018 6E-07 57.9 8.7 29 222-250 50-78 (285)
178 2w58_A DNAI, primosome compone 95.9 0.0082 2.8E-07 57.2 5.8 41 224-264 55-95 (202)
179 1rj9_A FTSY, signal recognitio 95.9 0.0045 1.5E-07 64.1 4.1 41 221-261 100-140 (304)
180 2z4s_A Chromosomal replication 95.9 0.078 2.7E-06 57.4 13.9 40 223-262 130-171 (440)
181 2px0_A Flagellar biosynthesis 95.9 0.0042 1.4E-07 64.0 3.6 42 221-262 103-145 (296)
182 2v3c_C SRP54, signal recogniti 95.8 0.0022 7.6E-08 69.6 1.4 42 221-262 97-138 (432)
183 2qby_B CDC6 homolog 3, cell di 95.8 0.03 1E-06 58.4 10.1 29 220-248 42-70 (384)
184 3czq_A Putative polyphosphate 95.8 0.049 1.7E-06 56.1 11.1 110 220-354 83-212 (304)
185 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0032 1.1E-07 66.5 2.2 30 221-250 22-51 (359)
186 2chg_A Replication factor C sm 95.7 0.053 1.8E-06 51.1 10.6 25 226-250 41-65 (226)
187 3eie_A Vacuolar protein sortin 95.7 0.057 1.9E-06 55.7 11.6 29 222-250 50-78 (322)
188 2zr9_A Protein RECA, recombina 95.7 0.041 1.4E-06 57.8 10.6 39 222-260 60-98 (349)
189 1l8q_A Chromosomal replication 95.7 0.024 8.2E-07 58.3 8.6 40 223-262 37-76 (324)
190 2v1u_A Cell division control p 95.7 0.043 1.5E-06 57.0 10.7 28 221-248 42-69 (387)
191 3b9q_A Chloroplast SRP recepto 95.7 0.0058 2E-07 63.1 3.9 41 221-261 98-138 (302)
192 4b4t_K 26S protease regulatory 95.7 0.024 8.3E-07 61.3 8.9 29 222-250 205-233 (428)
193 3p32_A Probable GTPase RV1496/ 95.7 0.012 3.9E-07 62.1 6.2 42 220-261 76-117 (355)
194 4b4t_L 26S protease subunit RP 95.7 0.025 8.5E-07 61.4 8.8 29 222-250 214-242 (437)
195 4dzz_A Plasmid partitioning pr 95.6 0.081 2.8E-06 50.0 11.5 37 224-260 3-39 (206)
196 4b4t_M 26S protease regulatory 95.6 0.022 7.6E-07 61.7 8.1 29 222-250 214-242 (434)
197 2og2_A Putative signal recogni 95.6 0.0066 2.3E-07 64.3 3.9 41 221-261 155-195 (359)
198 4b4t_J 26S protease regulatory 95.6 0.024 8.4E-07 60.8 8.3 28 223-250 182-209 (405)
199 2kjq_A DNAA-related protein; s 95.5 0.0082 2.8E-07 55.2 3.8 39 222-260 35-73 (149)
200 1xp8_A RECA protein, recombina 95.4 0.095 3.2E-06 55.5 12.3 39 222-260 73-111 (366)
201 2jeo_A Uridine-cytidine kinase 95.4 0.011 3.7E-07 58.6 4.7 30 221-250 23-52 (245)
202 3bh0_A DNAB-like replicative h 95.4 0.11 3.8E-06 53.5 12.4 40 221-260 66-105 (315)
203 3b9p_A CG5977-PA, isoform A; A 95.4 0.034 1.2E-06 56.2 8.3 29 222-250 53-81 (297)
204 4b4t_H 26S protease regulatory 95.3 0.032 1.1E-06 60.9 8.2 30 221-250 241-270 (467)
205 2vhj_A Ntpase P4, P4; non- hyd 95.3 0.032 1.1E-06 58.1 7.7 33 224-259 124-156 (331)
206 3hr8_A Protein RECA; alpha and 95.2 0.042 1.4E-06 58.0 8.6 39 222-260 60-98 (356)
207 1np6_A Molybdopterin-guanine d 95.2 0.015 5.1E-07 55.1 4.6 35 224-258 7-41 (174)
208 2r6a_A DNAB helicase, replicat 95.2 0.09 3.1E-06 57.1 11.4 109 221-338 201-320 (454)
209 1ls1_A Signal recognition part 95.1 0.017 5.9E-07 59.3 5.2 40 222-261 97-136 (295)
210 2qmh_A HPR kinase/phosphorylas 95.1 0.011 3.7E-07 57.5 3.4 33 222-260 33-65 (205)
211 4b4t_I 26S protease regulatory 95.1 0.045 1.5E-06 59.1 8.6 29 222-250 215-243 (437)
212 3d8b_A Fidgetin-like protein 1 95.1 0.048 1.7E-06 57.2 8.7 29 222-250 116-144 (357)
213 1lv7_A FTSH; alpha/beta domain 95.0 0.017 5.8E-07 57.3 4.7 27 224-250 46-72 (257)
214 1xwi_A SKD1 protein; VPS4B, AA 95.0 0.043 1.5E-06 56.9 7.8 26 222-247 44-69 (322)
215 2w0m_A SSO2452; RECA, SSPF, un 95.0 0.017 5.9E-07 55.6 4.5 39 222-260 22-60 (235)
216 1lvg_A Guanylate kinase, GMP k 95.0 0.011 3.9E-07 56.7 3.1 26 223-248 4-29 (198)
217 1dek_A Deoxynucleoside monopho 95.0 0.018 6.1E-07 57.6 4.6 32 224-260 2-33 (241)
218 3bgw_A DNAB-like replicative h 94.9 0.063 2.2E-06 58.3 9.2 110 221-339 195-318 (444)
219 2qp9_X Vacuolar protein sortin 94.9 0.038 1.3E-06 58.0 7.3 28 223-250 84-111 (355)
220 1g41_A Heat shock protein HSLU 94.9 0.014 5E-07 63.4 4.0 28 223-250 50-77 (444)
221 2r2a_A Uncharacterized protein 94.9 0.017 5.9E-07 55.9 4.2 39 223-261 5-49 (199)
222 3aez_A Pantothenate kinase; tr 94.9 0.018 6.2E-07 59.7 4.4 41 220-260 87-129 (312)
223 2orw_A Thymidine kinase; TMTK, 94.8 0.02 6.9E-07 54.5 4.4 35 223-257 3-37 (184)
224 2z43_A DNA repair and recombin 94.8 0.11 3.6E-06 53.9 10.2 40 222-261 106-151 (324)
225 4fcw_A Chaperone protein CLPB; 94.8 0.025 8.5E-07 57.4 5.3 37 224-260 48-84 (311)
226 3cf0_A Transitional endoplasmi 94.8 0.018 6.1E-07 59.0 4.2 29 222-250 48-76 (301)
227 2r8r_A Sensor protein; KDPD, P 94.8 0.029 1E-06 55.5 5.5 42 220-261 3-44 (228)
228 3rhf_A Putative polyphosphate 94.7 0.075 2.5E-06 54.2 8.4 109 221-354 73-201 (289)
229 3te6_A Regulatory protein SIR3 94.7 0.14 4.9E-06 53.1 10.7 29 220-248 42-70 (318)
230 1fnn_A CDC6P, cell division co 94.7 0.1 3.6E-06 54.2 9.8 34 225-258 46-80 (389)
231 3pvs_A Replication-associated 94.6 0.09 3.1E-06 57.2 9.5 27 224-250 51-77 (447)
232 2dr3_A UPF0273 protein PH0284; 94.6 0.026 8.9E-07 55.0 4.7 39 222-260 22-60 (247)
233 1v5w_A DMC1, meiotic recombina 94.6 0.19 6.4E-06 52.5 11.5 41 221-261 120-166 (343)
234 1d2n_A N-ethylmaleimide-sensit 94.6 0.031 1E-06 56.0 5.2 31 220-250 61-91 (272)
235 2qgz_A Helicase loader, putati 94.6 0.032 1.1E-06 57.5 5.5 44 223-266 152-196 (308)
236 1njg_A DNA polymerase III subu 94.5 0.023 8E-07 54.2 3.8 28 223-250 45-72 (250)
237 1nd6_A Prostatic acid phosphat 94.4 0.089 3.1E-06 54.7 8.6 65 434-498 7-87 (354)
238 3n70_A Transport activator; si 94.4 0.024 8.3E-07 51.4 3.7 33 226-259 27-59 (145)
239 1iqp_A RFCS; clamp loader, ext 94.4 0.16 5.3E-06 51.5 10.2 24 226-249 49-72 (327)
240 1ye8_A Protein THEP1, hypothet 94.4 0.024 8.1E-07 53.8 3.7 24 225-248 2-25 (178)
241 2dyk_A GTP-binding protein; GT 94.4 0.012 4E-07 53.1 1.5 21 226-246 4-24 (161)
242 3czp_A Putative polyphosphate 94.4 0.19 6.6E-06 55.3 11.5 111 220-355 297-427 (500)
243 3hws_A ATP-dependent CLP prote 94.4 0.025 8.5E-07 59.3 4.3 29 222-250 50-78 (363)
244 3lda_A DNA repair protein RAD5 94.4 0.19 6.5E-06 53.8 11.1 39 222-260 177-221 (400)
245 3vfd_A Spastin; ATPase, microt 94.3 0.078 2.7E-06 56.2 7.8 28 223-250 148-175 (389)
246 2vp4_A Deoxynucleoside kinase; 94.3 0.014 4.8E-07 57.3 1.9 27 220-246 17-43 (230)
247 3bfv_A CAPA1, CAPB2, membrane 94.3 0.046 1.6E-06 55.2 5.8 41 221-261 80-121 (271)
248 1ofh_A ATP-dependent HSL prote 94.3 0.028 9.5E-07 56.8 4.1 28 223-250 50-77 (310)
249 2p67_A LAO/AO transport system 94.2 0.038 1.3E-06 57.8 5.1 42 220-261 53-94 (341)
250 3end_A Light-independent proto 94.2 0.04 1.4E-06 56.2 5.1 41 220-260 38-78 (307)
251 1cr0_A DNA primase/helicase; R 94.2 0.037 1.3E-06 56.2 4.9 40 221-260 33-73 (296)
252 1sxj_B Activator 1 37 kDa subu 94.2 0.12 4.2E-06 52.1 8.9 27 222-249 42-68 (323)
253 2www_A Methylmalonic aciduria 94.2 0.046 1.6E-06 57.4 5.7 41 220-260 71-111 (349)
254 2wsm_A Hydrogenase expression/ 94.2 0.048 1.7E-06 52.3 5.4 28 221-248 28-55 (221)
255 1xx6_A Thymidine kinase; NESG, 94.1 0.055 1.9E-06 52.0 5.6 39 220-258 5-43 (191)
256 2x8a_A Nuclear valosin-contain 94.1 0.026 8.7E-07 57.2 3.4 24 226-249 47-70 (274)
257 2b8t_A Thymidine kinase; deoxy 94.1 0.045 1.5E-06 54.0 5.1 39 220-258 9-47 (223)
258 1um8_A ATP-dependent CLP prote 94.1 0.029 1E-06 59.0 4.0 28 223-250 72-99 (376)
259 1q57_A DNA primase/helicase; d 94.1 0.088 3E-06 57.8 7.9 40 221-260 240-280 (503)
260 3czp_A Putative polyphosphate 94.0 0.13 4.3E-06 56.8 9.0 110 220-354 40-169 (500)
261 3ug7_A Arsenical pump-driving 94.0 0.048 1.6E-06 57.2 5.5 42 220-261 23-64 (349)
262 2ph1_A Nucleotide-binding prot 94.0 0.065 2.2E-06 53.4 6.2 50 209-261 8-57 (262)
263 1ixz_A ATP-dependent metallopr 93.9 0.029 1E-06 55.5 3.4 23 226-248 52-74 (254)
264 1znw_A Guanylate kinase, GMP k 93.9 0.031 1E-06 53.8 3.5 28 221-248 18-45 (207)
265 1z6g_A Guanylate kinase; struc 93.9 0.025 8.6E-07 55.1 2.9 26 222-247 22-47 (218)
266 3zq6_A Putative arsenical pump 93.9 0.052 1.8E-06 56.2 5.4 39 223-261 14-52 (324)
267 3cf2_A TER ATPase, transitiona 93.9 0.054 1.9E-06 63.1 6.0 30 221-250 236-265 (806)
268 3iqw_A Tail-anchored protein t 93.8 0.055 1.9E-06 56.6 5.4 39 222-260 15-53 (334)
269 3la6_A Tyrosine-protein kinase 93.8 0.094 3.2E-06 53.5 7.0 42 220-261 90-131 (286)
270 2woo_A ATPase GET3; tail-ancho 93.8 0.052 1.8E-06 56.5 5.2 40 222-261 18-57 (329)
271 1in4_A RUVB, holliday junction 93.7 0.032 1.1E-06 57.9 3.5 28 223-250 51-78 (334)
272 2ehv_A Hypothetical protein PH 93.7 0.047 1.6E-06 53.2 4.5 39 222-260 29-68 (251)
273 3uk6_A RUVB-like 2; hexameric 93.7 0.055 1.9E-06 56.3 5.2 27 223-249 70-96 (368)
274 2ce7_A Cell division protein F 93.7 0.17 5.8E-06 55.4 9.2 25 226-250 52-76 (476)
275 2r62_A Cell division protease 93.7 0.023 8E-07 56.5 2.1 25 226-250 47-71 (268)
276 1c9k_A COBU, adenosylcobinamid 93.6 0.032 1.1E-06 53.3 2.9 31 225-259 1-31 (180)
277 2bjv_A PSP operon transcriptio 93.6 0.045 1.5E-06 54.5 4.1 36 225-260 31-66 (265)
278 1pzn_A RAD51, DNA repair and r 93.5 0.83 2.8E-05 47.7 13.9 27 221-247 129-155 (349)
279 2hf9_A Probable hydrogenase ni 93.5 0.074 2.5E-06 51.2 5.4 28 221-248 36-63 (226)
280 2f1r_A Molybdopterin-guanine d 93.5 0.033 1.1E-06 52.5 2.8 29 225-253 4-32 (171)
281 3ntl_A Acid glucose-1-phosphat 93.5 0.23 7.8E-06 53.1 9.7 66 433-498 10-100 (398)
282 4a74_A DNA repair and recombin 93.5 0.045 1.5E-06 52.6 3.8 27 221-247 23-49 (231)
283 3kjh_A CO dehydrogenase/acetyl 93.5 0.043 1.5E-06 53.5 3.6 36 226-261 3-38 (254)
284 1iy2_A ATP-dependent metallopr 93.4 0.042 1.4E-06 55.3 3.4 23 226-248 76-98 (278)
285 2qm8_A GTPase/ATPase; G protei 93.3 0.071 2.4E-06 55.7 5.2 41 220-260 52-92 (337)
286 1svm_A Large T antigen; AAA+ f 93.3 0.056 1.9E-06 57.5 4.5 30 221-250 167-196 (377)
287 2qby_A CDC6 homolog 1, cell di 93.2 0.051 1.7E-06 56.3 4.0 39 221-259 43-84 (386)
288 1htw_A HI0065; nucleotide-bind 93.2 0.066 2.3E-06 49.7 4.2 28 221-248 31-58 (158)
289 3it3_A Acid phosphatase; HAP, 93.1 0.25 8.6E-06 51.6 9.0 66 433-498 11-92 (342)
290 3pfi_A Holliday junction ATP-d 93.0 0.059 2E-06 55.5 4.0 26 225-250 57-82 (338)
291 2woj_A ATPase GET3; tail-ancho 93.0 0.084 2.9E-06 55.5 5.2 40 222-261 17-58 (354)
292 1dkq_A Phytase; histidine acid 93.0 0.19 6.4E-06 53.9 8.0 65 434-498 12-100 (410)
293 3k9g_A PF-32 protein; ssgcid, 92.9 0.07 2.4E-06 53.1 4.3 39 222-261 27-65 (267)
294 3ea0_A ATPase, para family; al 92.9 0.11 3.6E-06 50.7 5.5 39 223-261 5-44 (245)
295 1sxj_A Activator 1 95 kDa subu 92.9 0.062 2.1E-06 59.3 4.2 28 223-250 77-104 (516)
296 3io3_A DEHA2D07832P; chaperone 92.9 0.087 3E-06 55.4 5.1 40 221-260 16-57 (348)
297 2c9o_A RUVB-like 1; hexameric 92.9 0.059 2E-06 58.6 3.9 27 223-249 63-89 (456)
298 3hu3_A Transitional endoplasmi 92.8 0.21 7.1E-06 54.9 8.3 38 222-262 237-274 (489)
299 2xtp_A GTPase IMAP family memb 92.8 0.31 1.1E-05 48.1 8.9 26 221-246 20-45 (260)
300 1tf7_A KAIC; homohexamer, hexa 92.8 0.26 9E-06 54.4 9.2 39 221-259 279-317 (525)
301 1tue_A Replication protein E1; 92.8 0.048 1.7E-06 53.2 2.8 26 224-249 59-84 (212)
302 3cio_A ETK, tyrosine-protein k 92.8 0.15 5.3E-06 52.1 6.8 41 221-261 102-143 (299)
303 2oze_A ORF delta'; para, walke 92.8 0.073 2.5E-06 53.9 4.2 41 222-262 34-76 (298)
304 1cp2_A CP2, nitrogenase iron p 92.8 0.096 3.3E-06 52.0 5.0 36 225-260 3-38 (269)
305 2eyu_A Twitching motility prot 92.7 0.082 2.8E-06 53.2 4.5 28 222-249 24-51 (261)
306 3t1o_A Gliding protein MGLA; G 92.7 0.036 1.2E-06 51.5 1.7 27 222-248 13-39 (198)
307 3tqf_A HPR(Ser) kinase; transf 92.7 0.084 2.9E-06 50.2 4.2 25 222-246 15-39 (181)
308 2afh_E Nitrogenase iron protei 92.7 0.093 3.2E-06 53.0 4.8 36 225-260 4-39 (289)
309 2i3b_A HCR-ntpase, human cance 92.6 0.061 2.1E-06 51.5 3.2 27 225-251 3-29 (189)
310 2wjg_A FEOB, ferrous iron tran 92.5 0.096 3.3E-06 48.4 4.3 26 220-245 4-29 (188)
311 4dcu_A GTP-binding protein ENG 92.4 0.071 2.4E-06 57.9 3.8 23 223-245 23-45 (456)
312 2v9p_A Replication protein E1; 92.4 0.077 2.6E-06 54.8 3.8 27 221-247 124-150 (305)
313 1n0w_A DNA repair protein RAD5 92.4 0.067 2.3E-06 51.9 3.2 40 221-260 22-67 (243)
314 1g3q_A MIND ATPase, cell divis 92.3 0.1 3.5E-06 50.6 4.5 39 223-261 3-41 (237)
315 2j9r_A Thymidine kinase; TK1, 92.3 0.15 5.2E-06 49.9 5.7 39 220-258 25-63 (214)
316 2zts_A Putative uncharacterize 92.3 0.1 3.5E-06 50.7 4.5 38 222-259 29-67 (251)
317 3cwq_A Para family chromosome 92.3 0.12 4.3E-06 49.7 5.0 37 224-261 2-38 (209)
318 3u61_B DNA polymerase accessor 92.3 0.082 2.8E-06 54.1 3.9 31 220-250 45-75 (324)
319 2zan_A Vacuolar protein sortin 92.2 0.085 2.9E-06 57.2 4.0 26 222-247 166-191 (444)
320 1jr3_A DNA polymerase III subu 92.1 0.091 3.1E-06 54.5 4.1 29 222-250 37-65 (373)
321 1sxj_D Activator 1 41 kDa subu 92.1 0.076 2.6E-06 54.7 3.4 23 226-248 61-83 (353)
322 1sxj_E Activator 1 40 kDa subu 92.1 0.081 2.8E-06 54.7 3.6 28 220-248 34-61 (354)
323 1ihu_A Arsenical pump-driving 92.0 0.11 3.7E-06 58.3 4.8 40 221-260 6-45 (589)
324 3co5_A Putative two-component 91.9 0.028 9.7E-07 50.8 -0.1 23 226-248 30-52 (143)
325 1hqc_A RUVB; extended AAA-ATPa 91.9 0.082 2.8E-06 53.8 3.3 27 224-250 39-65 (324)
326 2r44_A Uncharacterized protein 91.9 0.059 2E-06 55.5 2.2 26 225-250 48-73 (331)
327 1hyq_A MIND, cell division inh 91.8 0.14 4.6E-06 50.7 4.8 39 223-261 3-41 (263)
328 1ypw_A Transitional endoplasmi 91.8 0.23 7.9E-06 57.9 7.5 30 221-250 236-265 (806)
329 3q9l_A Septum site-determining 91.8 0.13 4.3E-06 50.6 4.5 39 223-261 3-41 (260)
330 1sxj_C Activator 1 40 kDa subu 91.8 0.089 3.1E-06 54.5 3.5 25 226-250 49-73 (340)
331 1p6x_A Thymidine kinase; P-loo 91.7 0.063 2.1E-06 56.2 2.2 31 220-250 4-34 (334)
332 2wnh_A 3-phytase; histidine ac 91.7 0.3 1E-05 52.3 7.7 65 434-498 20-108 (418)
333 1g8p_A Magnesium-chelatase 38 91.7 0.056 1.9E-06 55.7 1.8 24 226-249 48-71 (350)
334 3m6a_A ATP-dependent protease 91.7 0.098 3.4E-06 58.3 3.9 29 222-250 107-135 (543)
335 3cmu_A Protein RECA, recombina 91.6 0.91 3.1E-05 57.7 12.7 40 221-260 1425-1464(2050)
336 3pxi_A Negative regulator of g 91.6 0.15 5.3E-06 58.9 5.5 22 226-247 204-225 (758)
337 1upt_A ARL1, ADP-ribosylation 91.5 0.15 5.2E-06 46.0 4.4 26 220-245 4-29 (171)
338 3iev_A GTP-binding protein ERA 91.4 1.2 4.2E-05 45.4 11.7 26 220-245 7-32 (308)
339 1nlf_A Regulatory protein REPA 91.4 0.11 3.8E-06 52.2 3.6 27 222-248 29-55 (279)
340 3pxi_A Negative regulator of g 91.3 0.16 5.6E-06 58.6 5.4 43 220-262 517-560 (758)
341 1r6b_X CLPA protein; AAA+, N-t 91.2 0.55 1.9E-05 54.1 9.7 39 221-262 485-524 (758)
342 2ewv_A Twitching motility prot 91.2 0.14 4.7E-06 54.3 4.2 29 221-249 134-162 (372)
343 1wcv_1 SOJ, segregation protei 91.2 0.1 3.5E-06 51.7 3.1 39 223-261 7-45 (257)
344 3i8s_A Ferrous iron transport 91.1 0.27 9.1E-06 49.5 6.1 24 223-246 3-26 (274)
345 1ojl_A Transcriptional regulat 91.1 0.15 5.2E-06 52.2 4.3 35 225-259 27-61 (304)
346 1a5t_A Delta prime, HOLB; zinc 91.1 0.21 7.3E-06 51.7 5.5 40 209-250 12-51 (334)
347 2dhr_A FTSH; AAA+ protein, hex 90.9 0.14 4.7E-06 56.5 4.0 24 226-249 67-90 (499)
348 3tif_A Uncharacterized ABC tra 90.9 0.11 3.9E-06 51.3 3.0 26 222-247 30-55 (235)
349 2chq_A Replication factor C sm 90.8 0.16 5.3E-06 51.3 4.1 23 226-248 41-63 (319)
350 3fkq_A NTRC-like two-domain pr 90.7 0.19 6.4E-06 53.0 4.7 40 221-260 141-181 (373)
351 3pxg_A Negative regulator of g 90.7 0.15 5.1E-06 55.6 4.1 24 225-248 203-226 (468)
352 1u0j_A DNA replication protein 90.6 0.24 8.3E-06 50.1 5.2 30 221-250 102-131 (267)
353 2hjg_A GTP-binding protein ENG 90.6 0.17 5.7E-06 54.6 4.3 21 225-245 5-25 (436)
354 3cmu_A Protein RECA, recombina 90.6 1.1 3.7E-05 57.0 12.1 51 222-272 382-436 (2050)
355 2cbz_A Multidrug resistance-as 90.5 0.13 4.3E-06 51.0 3.0 26 222-247 30-55 (237)
356 1of1_A Thymidine kinase; trans 90.4 0.14 4.8E-06 54.3 3.4 32 220-251 46-77 (376)
357 2wji_A Ferrous iron transport 90.4 0.17 5.8E-06 46.1 3.6 23 223-245 3-25 (165)
358 2pcj_A ABC transporter, lipopr 90.3 0.12 4.3E-06 50.5 2.8 25 223-247 30-54 (224)
359 2gj8_A MNME, tRNA modification 90.3 0.18 6E-06 46.6 3.6 25 222-246 3-27 (172)
360 4ag6_A VIRB4 ATPase, type IV s 90.3 0.21 7.2E-06 52.8 4.7 35 226-260 38-72 (392)
361 1z0f_A RAB14, member RAS oncog 90.3 0.19 6.4E-06 45.7 3.8 27 220-246 12-38 (179)
362 1mv5_A LMRA, multidrug resista 90.2 0.16 5.3E-06 50.4 3.4 27 222-248 27-53 (243)
363 1z2a_A RAS-related protein RAB 90.2 0.19 6.5E-06 45.1 3.7 25 222-246 4-28 (168)
364 3cmw_A Protein RECA, recombina 90.1 0.72 2.5E-05 57.7 9.8 40 221-260 730-769 (1706)
365 2ce2_X GTPase HRAS; signaling 90.1 0.2 6.8E-06 44.6 3.7 23 224-246 4-26 (166)
366 2ged_A SR-beta, signal recogni 90.1 0.2 7E-06 46.5 3.9 26 221-246 46-71 (193)
367 1lw7_A Transcriptional regulat 90.1 0.16 5.3E-06 53.4 3.4 27 223-249 170-196 (365)
368 1ihu_A Arsenical pump-driving 90.0 0.26 8.9E-06 55.2 5.4 40 221-260 325-364 (589)
369 1nrj_B SR-beta, signal recogni 90.0 0.19 6.4E-06 47.9 3.7 28 220-247 9-36 (218)
370 3th5_A RAS-related C3 botulinu 89.5 0.058 2E-06 51.0 0.0 26 220-245 27-52 (204)
371 2lkc_A Translation initiation 90.0 0.21 7.3E-06 45.4 3.9 26 220-245 5-30 (178)
372 3jvv_A Twitching mobility prot 89.9 0.21 7.3E-06 52.5 4.3 27 224-250 124-150 (356)
373 3cmw_A Protein RECA, recombina 89.8 1.5 5.1E-05 55.0 12.2 39 222-260 382-420 (1706)
374 1oix_A RAS-related protein RAB 89.8 0.2 6.9E-06 47.0 3.7 26 222-247 28-53 (191)
375 2xj4_A MIPZ; replication, cell 89.8 0.2 6.8E-06 50.6 3.8 38 224-261 6-43 (286)
376 2hxs_A RAB-26, RAS-related pro 89.7 0.25 8.5E-06 44.9 4.2 26 220-245 3-28 (178)
377 1b0u_A Histidine permease; ABC 89.7 0.16 5.4E-06 51.1 3.0 26 222-247 31-56 (262)
378 1pui_A ENGB, probable GTP-bind 89.6 0.13 4.4E-06 48.7 2.1 25 221-245 24-48 (210)
379 1p9r_A General secretion pathw 89.6 0.35 1.2E-05 52.0 5.8 30 221-250 165-194 (418)
380 2d2e_A SUFC protein; ABC-ATPas 89.6 0.18 6.3E-06 50.1 3.4 24 223-246 29-52 (250)
381 3bc1_A RAS-related protein RAB 89.6 0.24 8.1E-06 45.6 3.9 26 220-245 8-33 (195)
382 4g1u_C Hemin import ATP-bindin 89.6 0.16 5.3E-06 51.3 2.8 25 223-247 37-61 (266)
383 2ff7_A Alpha-hemolysin translo 89.5 0.16 5.5E-06 50.6 2.8 26 223-248 35-60 (247)
384 1kao_A RAP2A; GTP-binding prot 89.5 0.24 8.1E-06 44.2 3.7 24 223-246 3-26 (167)
385 2zu0_C Probable ATP-dependent 89.5 0.2 6.7E-06 50.5 3.5 25 222-246 45-69 (267)
386 3b85_A Phosphate starvation-in 89.5 0.16 5.6E-06 49.2 2.8 24 223-246 22-45 (208)
387 2olj_A Amino acid ABC transpor 89.5 0.17 5.8E-06 51.0 3.0 26 222-247 49-74 (263)
388 2ixe_A Antigen peptide transpo 89.4 0.17 5.8E-06 51.1 3.0 26 222-247 44-69 (271)
389 2ghi_A Transport protein; mult 89.4 0.17 5.9E-06 50.8 3.0 27 222-248 45-71 (260)
390 1w5s_A Origin recognition comp 89.4 0.2 6.8E-06 52.6 3.6 29 221-249 48-78 (412)
391 2qen_A Walker-type ATPase; unk 89.4 0.25 8.4E-06 50.4 4.2 32 224-260 32-63 (350)
392 1qvr_A CLPB protein; coiled co 89.3 0.38 1.3E-05 56.4 6.3 24 225-248 193-216 (854)
393 1u8z_A RAS-related protein RAL 89.3 0.28 9.4E-06 43.8 4.0 24 223-246 4-27 (168)
394 3cf2_A TER ATPase, transitiona 89.3 0.28 9.4E-06 57.2 5.0 28 223-250 511-538 (806)
395 2erx_A GTP-binding protein DI- 89.3 0.23 8E-06 44.6 3.6 23 223-245 3-25 (172)
396 3con_A GTPase NRAS; structural 89.3 0.22 7.7E-06 46.1 3.5 27 220-246 18-44 (190)
397 2onk_A Molybdate/tungstate ABC 89.3 0.2 6.9E-06 49.7 3.3 25 224-248 25-49 (240)
398 1nij_A Hypothetical protein YJ 89.3 0.2 6.7E-06 51.7 3.4 24 224-247 5-28 (318)
399 3e1s_A Exodeoxyribonuclease V, 89.2 0.27 9.1E-06 55.2 4.6 34 224-257 205-238 (574)
400 1ji0_A ABC transporter; ATP bi 89.2 0.18 6.1E-06 49.9 2.8 25 223-247 32-56 (240)
401 1e2k_A Thymidine kinase; trans 89.1 0.14 4.8E-06 53.4 2.2 30 222-251 3-32 (331)
402 3ice_A Transcription terminati 89.1 1.2 4E-05 47.6 9.2 28 223-250 174-201 (422)
403 1ky3_A GTP-binding protein YPT 89.1 0.26 8.8E-06 44.9 3.7 26 221-246 6-31 (182)
404 1m7b_A RND3/RHOE small GTP-bin 89.1 0.25 8.6E-06 45.7 3.7 27 220-246 4-30 (184)
405 2pze_A Cystic fibrosis transme 89.1 0.18 6.2E-06 49.5 2.8 27 222-248 33-59 (229)
406 1g6h_A High-affinity branched- 89.0 0.18 6.3E-06 50.4 2.8 27 222-248 32-58 (257)
407 3gfo_A Cobalt import ATP-bindi 89.0 0.17 6E-06 51.3 2.7 26 223-248 34-59 (275)
408 1z06_A RAS-related protein RAB 89.0 0.26 8.9E-06 45.7 3.7 26 220-245 17-42 (189)
409 2yz2_A Putative ABC transporte 88.9 0.19 6.7E-06 50.5 3.0 26 222-247 32-57 (266)
410 3nbx_X ATPase RAVA; AAA+ ATPas 88.9 0.12 4.1E-06 57.0 1.5 24 225-248 43-66 (500)
411 2gza_A Type IV secretion syste 88.9 0.13 4.5E-06 54.1 1.8 27 223-249 175-201 (361)
412 1vpl_A ABC transporter, ATP-bi 88.9 0.2 6.7E-06 50.3 3.0 26 222-247 40-65 (256)
413 3kta_A Chromosome segregation 88.9 0.26 8.8E-06 45.7 3.6 24 225-248 28-51 (182)
414 3q85_A GTP-binding protein REM 88.9 0.22 7.7E-06 44.9 3.1 20 225-244 4-23 (169)
415 1ek0_A Protein (GTP-binding pr 88.8 0.24 8.2E-06 44.4 3.3 23 224-246 4-26 (170)
416 3q72_A GTP-binding protein RAD 88.8 0.21 7.2E-06 44.9 2.9 20 225-244 4-23 (166)
417 2fn4_A P23, RAS-related protei 88.8 0.32 1.1E-05 44.1 4.2 26 221-246 7-32 (181)
418 2nzj_A GTP-binding protein REM 88.8 0.28 9.5E-06 44.4 3.7 23 223-245 4-26 (175)
419 3upu_A ATP-dependent DNA helic 88.8 0.31 1E-05 52.9 4.6 28 225-252 47-74 (459)
420 1sgw_A Putative ABC transporte 88.7 0.17 5.8E-06 49.4 2.3 25 223-247 35-59 (214)
421 1c1y_A RAS-related protein RAP 88.7 0.29 1E-05 43.8 3.7 24 223-246 3-26 (167)
422 3oes_A GTPase rhebl1; small GT 88.6 0.28 9.5E-06 46.1 3.7 26 221-246 22-47 (201)
423 1qwo_A Phytase; alpha barrel, 88.5 0.93 3.2E-05 48.8 8.2 46 453-498 101-149 (442)
424 3kkq_A RAS-related protein M-R 88.5 0.33 1.1E-05 44.5 4.0 27 220-246 15-41 (183)
425 2f9l_A RAB11B, member RAS onco 88.5 0.29 1E-05 46.0 3.8 24 223-246 5-28 (199)
426 3clv_A RAB5 protein, putative; 88.5 0.41 1.4E-05 44.1 4.7 26 221-246 5-30 (208)
427 1r2q_A RAS-related protein RAB 88.5 0.26 9E-06 44.1 3.3 24 222-245 5-28 (170)
428 1z0j_A RAB-22, RAS-related pro 88.4 0.28 9.4E-06 44.1 3.4 25 222-246 5-29 (170)
429 2zej_A Dardarin, leucine-rich 88.4 0.2 7E-06 46.4 2.6 21 225-245 4-24 (184)
430 1byi_A Dethiobiotin synthase; 88.4 0.41 1.4E-05 45.9 4.8 36 224-259 3-38 (224)
431 1g16_A RAS-related protein SEC 88.4 0.26 8.9E-06 44.3 3.2 22 224-245 4-25 (170)
432 1moz_A ARL1, ADP-ribosylation 88.3 0.25 8.6E-06 45.2 3.1 24 221-244 16-39 (183)
433 2c78_A Elongation factor TU-A; 88.2 1.7 5.8E-05 46.1 10.0 29 220-248 8-36 (405)
434 4dsu_A GTPase KRAS, isoform 2B 88.2 0.29 1E-05 44.8 3.5 25 222-246 3-27 (189)
435 1fzq_A ADP-ribosylation factor 88.2 0.33 1.1E-05 45.0 3.8 26 220-245 13-38 (181)
436 2qi9_C Vitamin B12 import ATP- 88.2 0.22 7.7E-06 49.6 2.8 26 223-248 26-51 (249)
437 2ihy_A ABC transporter, ATP-bi 88.1 0.23 7.8E-06 50.4 2.8 26 223-248 47-72 (279)
438 2gf0_A GTP-binding protein DI- 88.1 0.38 1.3E-05 44.6 4.2 26 220-245 5-30 (199)
439 2orv_A Thymidine kinase; TP4A 88.0 0.52 1.8E-05 46.7 5.2 38 221-258 17-54 (234)
440 1wms_A RAB-9, RAB9, RAS-relate 87.9 0.31 1.1E-05 44.2 3.5 25 221-245 5-29 (177)
441 1z08_A RAS-related protein RAB 87.9 0.32 1.1E-05 43.7 3.5 25 222-246 5-29 (170)
442 1svi_A GTP-binding protein YSX 87.9 0.34 1.1E-05 45.0 3.7 24 222-245 22-45 (195)
443 3tw8_B RAS-related protein RAB 87.8 0.27 9.1E-06 44.7 2.9 25 221-245 7-31 (181)
444 4dcu_A GTP-binding protein ENG 87.8 0.39 1.3E-05 52.0 4.7 25 221-245 193-217 (456)
445 3lxx_A GTPase IMAP family memb 87.7 0.32 1.1E-05 47.4 3.6 27 220-246 26-52 (239)
446 2fna_A Conserved hypothetical 87.6 0.33 1.1E-05 49.4 3.8 32 225-259 32-63 (357)
447 1r8s_A ADP-ribosylation factor 87.6 0.34 1.2E-05 43.4 3.5 21 226-246 3-23 (164)
448 1qvr_A CLPB protein; coiled co 87.6 0.28 9.5E-06 57.6 3.6 40 221-260 585-625 (854)
449 2y8e_A RAB-protein 6, GH09086P 87.6 0.32 1.1E-05 44.1 3.3 24 222-245 13-36 (179)
450 2nq2_C Hypothetical ABC transp 87.6 0.25 8.6E-06 49.3 2.8 25 223-247 31-55 (253)
451 1zj6_A ADP-ribosylation factor 87.6 0.4 1.4E-05 44.3 4.0 26 220-245 13-38 (187)
452 2g6b_A RAS-related protein RAB 87.5 0.4 1.4E-05 43.6 3.9 27 220-246 7-33 (180)
453 3fvq_A Fe(3+) IONS import ATP- 87.5 0.31 1.1E-05 51.4 3.5 26 223-248 30-55 (359)
454 2bme_A RAB4A, RAS-related prot 87.4 0.32 1.1E-05 44.6 3.2 26 221-246 8-33 (186)
455 2a5y_B CED-4; apoptosis; HET: 87.3 0.35 1.2E-05 53.6 4.1 25 221-245 150-174 (549)
456 2efe_B Small GTP-binding prote 87.3 0.36 1.2E-05 44.0 3.5 27 220-246 9-35 (181)
457 2fh5_B SR-beta, signal recogni 87.3 0.33 1.1E-05 46.0 3.3 26 221-246 5-30 (214)
458 3tui_C Methionine import ATP-b 87.3 0.33 1.1E-05 51.4 3.5 26 222-247 53-78 (366)
459 2i1q_A DNA repair and recombin 87.2 0.4 1.4E-05 49.2 4.1 25 222-246 97-121 (322)
460 2a9k_A RAS-related protein RAL 87.2 0.4 1.4E-05 43.7 3.7 25 222-246 17-41 (187)
461 3pg5_A Uncharacterized protein 87.1 0.22 7.4E-06 52.4 2.1 38 224-261 3-40 (361)
462 3k1j_A LON protease, ATP-depen 87.1 0.34 1.2E-05 54.5 3.8 26 225-250 62-87 (604)
463 2cxx_A Probable GTP-binding pr 87.1 0.32 1.1E-05 44.7 3.0 20 226-245 4-23 (190)
464 1osn_A Thymidine kinase, VZV-T 87.1 0.25 8.4E-06 51.8 2.4 32 220-251 9-41 (341)
465 3ez2_A Plasmid partition prote 87.1 0.42 1.5E-05 50.6 4.4 39 223-261 109-153 (398)
466 3nh6_A ATP-binding cassette SU 87.1 0.2 6.8E-06 51.7 1.7 27 222-248 79-105 (306)
467 3lxw_A GTPase IMAP family memb 87.1 0.36 1.2E-05 47.7 3.6 26 220-245 18-43 (247)
468 2bov_A RAla, RAS-related prote 87.0 0.45 1.5E-05 44.4 4.0 26 221-246 12-37 (206)
469 3rlf_A Maltose/maltodextrin im 87.0 0.34 1.2E-05 51.5 3.5 27 222-248 28-54 (381)
470 3cbq_A GTP-binding protein REM 87.0 0.31 1.1E-05 45.9 2.9 25 220-244 20-44 (195)
471 1ksh_A ARF-like protein 2; sma 86.9 0.41 1.4E-05 44.1 3.6 25 221-245 16-40 (186)
472 2oil_A CATX-8, RAS-related pro 86.9 0.42 1.4E-05 44.3 3.8 27 220-246 22-48 (193)
473 3fwy_A Light-independent proto 86.9 0.59 2E-05 48.2 5.1 40 221-260 46-85 (314)
474 2yyz_A Sugar ABC transporter, 86.9 0.35 1.2E-05 51.0 3.5 27 222-248 28-54 (359)
475 1zd9_A ADP-ribosylation factor 86.8 0.41 1.4E-05 44.4 3.7 27 220-246 19-45 (188)
476 1ypw_A Transitional endoplasmi 86.8 0.21 7.1E-06 58.4 1.9 29 222-250 510-538 (806)
477 3t5g_A GTP-binding protein RHE 86.8 0.35 1.2E-05 44.3 3.1 24 222-245 5-28 (181)
478 2il1_A RAB12; G-protein, GDP, 86.7 0.39 1.3E-05 44.8 3.4 25 221-245 24-48 (192)
479 3pqc_A Probable GTP-binding pr 86.7 0.44 1.5E-05 43.9 3.7 24 223-246 23-46 (195)
480 3e2i_A Thymidine kinase; Zn-bi 86.7 0.64 2.2E-05 45.5 5.0 39 220-258 25-63 (219)
481 2it1_A 362AA long hypothetical 86.6 0.37 1.3E-05 50.9 3.5 27 222-248 28-54 (362)
482 2h17_A ADP-ribosylation factor 86.6 0.4 1.4E-05 44.2 3.4 26 220-245 18-43 (181)
483 1ko7_A HPR kinase/phosphatase; 86.6 0.47 1.6E-05 49.1 4.2 24 223-246 144-167 (314)
484 1vg8_A RAS-related protein RAB 86.6 0.44 1.5E-05 44.6 3.7 26 221-246 6-31 (207)
485 2bbs_A Cystic fibrosis transme 86.6 0.32 1.1E-05 49.7 2.9 26 222-247 63-88 (290)
486 1m2o_B GTP-binding protein SAR 86.6 0.38 1.3E-05 44.9 3.3 25 221-245 21-45 (190)
487 1f6b_A SAR1; gtpases, N-termin 86.5 0.42 1.4E-05 45.0 3.6 24 221-244 23-46 (198)
488 2pjz_A Hypothetical protein ST 86.5 0.32 1.1E-05 48.9 2.8 25 223-247 30-54 (263)
489 2qu8_A Putative nucleolar GTP- 86.5 0.5 1.7E-05 45.5 4.2 26 220-245 26-51 (228)
490 3sop_A Neuronal-specific septi 86.5 0.45 1.6E-05 47.9 4.0 25 224-248 3-27 (270)
491 3ihw_A Centg3; RAS, centaurin, 86.4 0.53 1.8E-05 43.8 4.2 27 220-246 17-43 (184)
492 1mh1_A RAC1; GTP-binding, GTPa 86.4 0.46 1.6E-05 43.4 3.7 25 222-246 4-28 (186)
493 1zcb_A G alpha I/13; GTP-bindi 86.4 0.42 1.4E-05 50.4 3.8 24 221-244 31-54 (362)
494 1z6t_A APAF-1, apoptotic prote 86.4 0.43 1.5E-05 53.0 4.1 25 221-245 145-169 (591)
495 1v43_A Sugar-binding transport 86.3 0.39 1.3E-05 50.9 3.5 25 223-247 37-61 (372)
496 2gf9_A RAS-related protein RAB 86.3 0.52 1.8E-05 43.6 4.0 26 221-246 20-45 (189)
497 1x3s_A RAS-related protein RAB 86.3 0.41 1.4E-05 44.2 3.3 25 222-246 14-38 (195)
498 1z47_A CYSA, putative ABC-tran 86.3 0.38 1.3E-05 50.7 3.4 26 223-248 41-66 (355)
499 3dz8_A RAS-related protein RAB 86.2 0.43 1.5E-05 44.4 3.4 25 223-247 23-47 (191)
500 2atv_A RERG, RAS-like estrogen 86.2 0.52 1.8E-05 44.0 4.0 26 221-246 26-51 (196)
No 1
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=100.00 E-value=1.7e-67 Score=589.37 Aligned_cols=395 Identities=47% Similarity=0.834 Sum_probs=366.2
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
...|.+|+|+|+|||||||+|++|+++|+|.++++++|+.|++|+.+.|.....++|...+++.++.++.++..+++++.
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~ 111 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVK 111 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999998887555678888888888888888888888888
Q ss_pred HHHH-cCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHH
Q 006920 300 SWMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 377 (625)
Q Consensus 300 ~~l~-~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~r 377 (625)
.+|. ..|.+||+|+||..+.+|+.++++ .+.++.++||++.|++++++++|+.+++..+|++.+. +++++.++|.+|
T Consensus 112 ~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~-d~e~~~~~~~~R 190 (520)
T 2axn_A 112 SYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDC-NSAEAMDDFMKR 190 (520)
T ss_dssp HHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTS-CHHHHHHHHHHH
T ss_pred HHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccC-CHHHHHHHHHHH
Confidence 8885 568888999999999999999988 6678899999999999999999998777778999988 899999999999
Q ss_pred HHhhhhccccCCCC------CeeEEeeccCCCCccceecccccCcCCceeeeeeccCCCCccEEEeccccccCCCCCCcC
Q 006920 378 LANYEKVYEPVDEG------SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIG 451 (625)
Q Consensus 378 l~~y~~~fEp~~e~------~~i~~id~~~~~g~~~~~~~~~g~L~~~~~~~l~n~~~~~~~I~LVRHGes~~n~~~~~~ 451 (625)
++.|++.|||++++ .|+++||+ |+++.+|++.|||++||||||||+|.++++||||||||+.+|..++++
T Consensus 191 i~~y~~~Yepi~~ee~~~dl~yik~id~----g~~~~~~~~~g~l~~~~~~~l~n~~~~~~~i~LvRHGet~~n~~~~~~ 266 (520)
T 2axn_A 191 ISCYEASYQPLDPDKCDRDLSLIKVIDV----GRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEHNLQGRIG 266 (520)
T ss_dssp HHHHHTTCCCCCTTTTTTTSEEEEEETT----TTEEEEECCCSHHHHHHHHHHTTCCCSCCCEEEEECCCBHHHHHTBCS
T ss_pred HHhhhhhhcccChhhcccCcceEEEEcC----ccccccCCCCCCcchhhhhhhcccCCCceeEEEeecceeccccCCccC
Confidence 99999999999732 68999999 999999999999999999999999999999999999999999888888
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCCCcccccccccccCCcCCCCCHHHHHhhChH
Q 006920 452 GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRALDEINAGVCDGMTYEEIKKNMPE 531 (625)
Q Consensus 452 gD~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~g~~v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~ 531 (625)
||.|||+.|++||+.++++|.+. ...++.|||||+.||+|||+.+ +.++.+++.|+|+++|.|+|++++++.+.+|+
T Consensus 267 gD~pLt~~G~~qA~~l~~~L~~~--~~~~~~v~sSpl~Ra~qTA~~i-~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~ 343 (520)
T 2axn_A 267 GDSGLSSRGKKFASALSKFVEEQ--NLKDLRVWTSQLKSTIQTAEAL-RLPYEQWKALNEIDAGVCEELTYEEIRDTYPE 343 (520)
T ss_dssp SCCCBCHHHHHHHHHHHHHHHHH--CCSCCEEEECSSHHHHHHHHTT-TSCEEECGGGSCCCCGGGTTCBHHHHHHHCHH
T ss_pred CCcccCHHHHHHHHHHHHHHHhc--CCCCCeEEeCCcHHHHHHHHHh-CCCcEEccccccccCCcccCCcHHHHHHHCHH
Confidence 99999999999999999999876 5567899999999999999998 78899999999999999999999999999999
Q ss_pred HHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEE
Q 006920 532 EYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQM 611 (625)
Q Consensus 532 ~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~ 611 (625)
.+..|..+++.+++|+|||+.++.+|+.+++.++.+. ++|||||||++|++|++++++.+.+.++.+.+|++++++|.+
T Consensus 344 ~~~~~~~d~~~~~~p~gEs~~~~~~Rv~~~l~~l~~~-~~vlvVsH~~~ir~ll~~ll~~~~~~~~~l~~p~~sv~~l~~ 422 (520)
T 2axn_A 344 EYALREQDKYYYRYPTGESYQDLVQRLEPVIMELERQ-ENVLVICHQAVLRCLLAYFLDKSAEEMPYLKCPLHTVLKLTP 422 (520)
T ss_dssp HHHHHHHCTTTCCCTTSCCHHHHHHHHHHHHHHHHHC-SSEEEEECHHHHHHHHHHHTTCCTTTGGGCCCCTTEEEEEEE
T ss_pred HHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHhCC-CcEEEEEChHHHHHHHHHHhCCCHHHhhccCCCCCeEEEEEE
Confidence 9999999999999999999999999999999999875 789999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEEEc
Q 006920 612 GVTGVQEKRYKL 623 (625)
Q Consensus 612 ~~~g~~~~r~~l 623 (625)
.++|+....+.+
T Consensus 423 ~~~g~~~~~~~l 434 (520)
T 2axn_A 423 VAYGCRVESIYL 434 (520)
T ss_dssp ETTEEEEEEEEC
T ss_pred cCCCceEEEEEC
Confidence 999988777654
No 2
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=100.00 E-value=7.6e-66 Score=570.12 Aligned_cols=395 Identities=46% Similarity=0.797 Sum_probs=365.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
...+.+|+|+|+|||||||+|++|++++++.+++++.++.|.+|+...|......+|+..+++..+.++..+..++.++.
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46688999999999999999999999999999999999999999988876555577888888888888888777887777
Q ss_pred HHHH-cCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHH
Q 006920 300 SWMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 377 (625)
Q Consensus 300 ~~l~-~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~r 377 (625)
.++. .+|.++|+|++|...++|+.+++. .+.++.++|++|.|++++++.+|+.+++..+|++.+. +++++.++|.+|
T Consensus 116 ~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~-~~e~~~~~~~~R 194 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNR-DSDEATEDFMRR 194 (469)
T ss_dssp HHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTTS-CHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccCC-CHHHHHHHHHHH
Confidence 7774 567788999999999999999988 6678899999999999999999998877778999988 899999999999
Q ss_pred HHhhhhccccCCCC-----CeeEEeeccCCCCccceecccccCcCCceeeeeeccCCCCccEEEeccccccCCCCCCcCC
Q 006920 378 LANYEKVYEPVDEG-----SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIGG 452 (625)
Q Consensus 378 l~~y~~~fEp~~e~-----~~i~~id~~~~~g~~~~~~~~~g~L~~~~~~~l~n~~~~~~~I~LVRHGes~~n~~~~~~g 452 (625)
+..|.+.|||++++ .|++++|+ |+++.+|++.|||++||||||||+|.++++||||||||+.+|..++++|
T Consensus 195 ~~~y~~~ye~l~~~~~~~~~~ik~~d~----~~~~~~~~~~g~~~~~~~~~l~n~~~~~~~i~LvRHGet~~n~~~~~~g 270 (469)
T 1bif_A 195 IECYENSYESLDEEQDRDLSYIKIMDV----GQSYVVNRVADHIQSRIVYYLMNIHVTPRSIYLCRHGESELNLKGRIGG 270 (469)
T ss_dssp HHHHHTTCCCCCTTTTTTSCEEEEETT----TTEEEEECCCSHHHHHHHHHHTTCCCCCCCEEEEECSCBHHHHHTBCSS
T ss_pred HHHhccEeEECCccccCCcceEEEEcC----ccceeccCccccchhhHHHHHhccCCCCceEEEeccceeccccCCeeCC
Confidence 99999999999852 89999999 9999999999999999999999999999999999999999999888899
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCCCcccccccccccCCcCCCCCHHHHHhhChHH
Q 006920 453 DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRALDEINAGVCDGMTYEEIKKNMPEE 532 (625)
Q Consensus 453 D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~g~~v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~ 532 (625)
|.|||+.|++||+.++++|... ...++.|||||+.||+|||+.+ +.++.+++.|+|+++|.|+|++.+++.+.+|+.
T Consensus 271 D~~Lt~~G~~qA~~l~~~l~~~--~~~~~~v~sSpl~Ra~qTA~~l-~~~~~~~~~L~E~~~G~~eg~~~~e~~~~~p~~ 347 (469)
T 1bif_A 271 DPGLSPRGREFSKHLAQFISDQ--NIKDLKVFTSQMKRTIQTAEAL-SVPYEQFKVLNEIDAGVCEEMTYEEIQDHYPLE 347 (469)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHH--TCTTCEEEECSSHHHHHHHTTS-SSCCEECGGGSCCCCGGGTTCBHHHHHHHCHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHh-CCCceECcccccccCCccCCCCHHHHHHHCHHH
Confidence 9999999999999999999876 5678999999999999999988 788889999999999999999999999999999
Q ss_pred HHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEc
Q 006920 533 YEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMG 612 (625)
Q Consensus 533 ~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~ 612 (625)
+..|..+++.+++|+|||+.++.+|+.+++.++.+ +++|||||||++|+++++++++.+...++.+.++++++++|++.
T Consensus 348 ~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~-~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~~~~~~v~~l~~~ 426 (469)
T 1bif_A 348 FALRDQDKYRYRYPKGESYEDLVQRLEPVIMELER-QENVLVICHQAVMRCLLAYFLDKAAEELPYLKCPLHTVLKLTPV 426 (469)
T ss_dssp HHHHHHCTTTCCCTTCCCHHHHHHHHHHHHHHHHH-CSSEEEEECHHHHHHHHHHHTTCCTTTGGGCCCCTTEEEEEEEC
T ss_pred HHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEeCHHHHHHHHHHHhCCCHHHhhcccCCCCEEEEEEEe
Confidence 99999999999999999999999999999999976 46899999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEc
Q 006920 613 VTGVQEKRYKL 623 (625)
Q Consensus 613 ~~g~~~~r~~l 623 (625)
.++|...+|++
T Consensus 427 ~~~~~~~~~~~ 437 (469)
T 1bif_A 427 AYGCKVESIFL 437 (469)
T ss_dssp SSSEEEEEEEC
T ss_pred CCCCceEEEec
Confidence 99999999986
No 3
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=100.00 E-value=1e-34 Score=286.95 Aligned_cols=188 Identities=29% Similarity=0.353 Sum_probs=174.3
Q ss_pred ccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCcccc
Q 006920 432 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 506 (625)
Q Consensus 432 ~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~v~~~ 506 (625)
|+||||||||+.+|..++++| |.|||+.|++||+.+++.|. ..+++.|||||+.||+|||+++ .+.++.++
T Consensus 2 m~l~lvRHGet~~n~~~~~~g~~D~pLt~~G~~qA~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 77 (207)
T 1h2e_A 2 TTLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLE----AVELAAIYTSTSGRALETAEIVRGGRLIPIYQD 77 (207)
T ss_dssp EEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHTT----TSCCSEEEECSSHHHHHHHHHHHTTCSCCEEEC
T ss_pred CEEEEEeCcCCcccccccCCCCCCCCCCHHHHHHHHHHHHHHc----CCCCCEEEECccHHHHHHHHHHHhcCCCCeEEC
Confidence 589999999999998888888 99999999999999998875 4689999999999999999999 46788899
Q ss_pred cccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEechHHHHHH
Q 006920 507 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQAVLRAL 584 (625)
Q Consensus 507 ~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~--~~~VlIVsHg~vir~L 584 (625)
+.|+|+++|.|+|++.+++.+.+|+.+..|..++..+.+|+|||+.++.+|+..++.++..+ +++|||||||++|+++
T Consensus 78 ~~L~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~vlvVsHg~~i~~l 157 (207)
T 1h2e_A 78 ERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTL 157 (207)
T ss_dssp GGGSCCCCGGGTTCBHHHHHHHCHHHHHHHHHCGGGCCCSSSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEECHHHHHHH
T ss_pred cccccCCceecCCCCHHHHHHHCHHHHHHHhhCccccCCCCCccHHHHHHHHHHHHHHHHHhCCCCeEEEEcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999763 6799999999999999
Q ss_pred HHHHhCCCCCCCCCcc-cCCcEEEEEEEcCCeEEEEEEEc
Q 006920 585 YAYFADRPLKEIPHIE-TPLHTIIEIQMGVTGVQEKRYKL 623 (625)
Q Consensus 585 l~~l~~~~~~~~~~l~-i~~~si~~l~~~~~g~~~~r~~l 623 (625)
++++++.+...++.+. +++|++++|+++..+|....+|-
T Consensus 158 ~~~l~~~~~~~~~~~~~~~n~~i~~l~~~~~~~~l~~~n~ 197 (207)
T 1h2e_A 158 MAAFKDTPLDHLWSPPYMYGTSVTIIEVDGGTFHVAVEGD 197 (207)
T ss_dssp HHHHTTCCGGGTTCSCCCCTTCEEEEEEETTEEEEEEEEE
T ss_pred HHHHhCCCHHHhhhccCCCCCEEEEEEEECCEEEEEEEcC
Confidence 9999999888888888 99999999999888888888763
No 4
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.4e-34 Score=283.66 Aligned_cols=190 Identities=23% Similarity=0.255 Sum_probs=167.4
Q ss_pred eeccCCCCccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCC
Q 006920 424 LVNTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGF 501 (625)
Q Consensus 424 l~n~~~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~g~ 501 (625)
||||+..+++||||||||+.+|..++++| |.|||+.|++||+.+++.|.+. ...++.|||||+.||+|||+++ +.
T Consensus 3 ~m~M~~~~~~l~lvRHG~t~~n~~~~~~g~~D~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~~-~~ 79 (208)
T 2a6p_A 3 AMAMGVRNHRLLLLRHGETAWSTLGRHTGGTEVELTDTGRTQAELAGQLLGEL--ELDDPIVICSPRRRTLDTAKLA-GL 79 (208)
T ss_dssp ------CCCCEEEEECCCBTTGGGTBCCSSCCCCBCHHHHHHHHHHHHHHHTT--CCSSCEEEECSSHHHHHHHHHT-TC
T ss_pred ccccCCCceEEEEEeCCCCcccccCcCcCCCCCCCCHHHHHHHHHHHHHHhcC--CCCCCEEEECCcHHHHHHHHHh-CC
Confidence 57777767899999999999998888877 9999999999999999998744 2334999999999999999994 78
Q ss_pred Cc-ccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHc--CCCcEEEEech
Q 006920 502 PK-IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER--QRAPVVVISHQ 578 (625)
Q Consensus 502 ~v-~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~--~~~~VlIVsHg 578 (625)
++ .+++.|+|+++|.|+|++.+++.+.+|+ +..|..++ |+|||+.++.+|+..++.++.+ .+++|||||||
T Consensus 80 ~~~~~~~~L~E~~~G~~eg~~~~el~~~~p~-~~~~~~~~-----p~gEs~~~~~~R~~~~l~~l~~~~~~~~vlvVsHg 153 (208)
T 2a6p_A 80 TVNEVTGLLAEWDYGSYEGLTTPQIRESEPD-WLVWTHGC-----PAGESVAQVNDRADSAVALALEHMSSRDVLFVSHG 153 (208)
T ss_dssp CCSEECGGGCCCCCGGGTTCBHHHHHTTCTT-CCHHHHCC-----TTSCCHHHHHHHHHHHHHHHHHHTTTSCEEEEECH
T ss_pred CceeeccceeecccceeCCCCHHHHHHhCcc-hhhccCCC-----CCCCCHHHHHHHHHHHHHHHHHhCCCCcEEEEeCH
Confidence 88 8999999999999999999999999998 88888664 8999999999999999999976 57899999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEEEEEE
Q 006920 579 AVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYK 622 (625)
Q Consensus 579 ~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~~r~~ 622 (625)
++|+++++++++.+...++.+.+++|++++|+++..+|....+|
T Consensus 154 ~~i~~l~~~l~~~~~~~~~~~~~~n~~v~~l~~~~~~~~l~~~n 197 (208)
T 2a6p_A 154 HFSRAVITRWVQLPLAEGSRFAMPTASIGICGFEHGVRQLAVLG 197 (208)
T ss_dssp HHHHHHHHHHTTCCGGGGGGBCCCTTEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHhCCCHHHhhhccCCCCEEEEEEEeCCceEEEEec
Confidence 99999999999998887778899999999999998888888776
No 5
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=100.00 E-value=2.5e-34 Score=284.72 Aligned_cols=188 Identities=27% Similarity=0.299 Sum_probs=170.0
Q ss_pred eccCCCCccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---c
Q 006920 425 VNTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A 499 (625)
Q Consensus 425 ~n~~~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~ 499 (625)
||.+..+++||||||||+.+|..++++| |.|||+.|++||+.+++.|+.. ..+++.|||||+.||+|||+++ +
T Consensus 1 ~~~~~~~~~l~lvRHGet~~n~~~~~~g~~D~pLt~~G~~qA~~l~~~L~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~ 78 (211)
T 1fzt_A 1 MTTEAAPNLLVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSR--GYKFDIAFTSALQRAQKTCQIILEEV 78 (211)
T ss_dssp CCCTTSCCEEEECBCCCBHHHHHTBCCSSSCCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEEeCCCCcccccCcccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHhc
Confidence 6788888999999999999998888877 9999999999999999999865 5589999999999999999999 3
Q ss_pred C---CCcccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHc----CCCc
Q 006920 500 G---FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER----QRAP 571 (625)
Q Consensus 500 g---~~v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~----~~~~ 571 (625)
+ .++.+++.|+|+++|.|+|++.+++.+.+|+. +..|..++ .+.+|+|||+.++.+|+..++.++.. .+++
T Consensus 79 ~~~~~~~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~w~~~~-~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~ 157 (211)
T 1fzt_A 79 GEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWRRSY-DIAPPNGESLKDTAERVLPYYKSTIVPHILKGEK 157 (211)
T ss_dssp TCTTSEEEEESTTSCCCCGGGTTCBHHHHHHHHHHHHHHHHHSSS-SCCSTTCCCHHHHHHHHHHHHHHHHTTHHHHTCC
T ss_pred CCCCCceEECcccccccCceecCCCHHHHHHhccHHHHHHHhhCC-CcCCcCCCCHHHHHHHHHHHHHHHHhhhhcCCCe
Confidence 4 67889999999999999999999999999875 66777665 78899999999999999999999864 3678
Q ss_pred EEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCe
Q 006920 572 VVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTG 615 (625)
Q Consensus 572 VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g 615 (625)
|||||||++|+++++++++.+...++.+.+++|+++.|+++..+
T Consensus 158 vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~i~~l~~~~~~ 201 (211)
T 1fzt_A 158 VLIAAHGNSLRALIMDLEGLTGDQIVKRELATGVPIVYHLDKDG 201 (211)
T ss_dssp EEEESCHHHHHHHHHHHHTCCTTTSSSCCCCBSSCEEEEBCSSS
T ss_pred EEEEeChHHHHHHHHHHhCCCHHHHHhcCCCCCcEEEEEEcCCC
Confidence 99999999999999999999988888899999999999987653
No 6
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=100.00 E-value=6.3e-33 Score=282.59 Aligned_cols=192 Identities=24% Similarity=0.328 Sum_probs=165.9
Q ss_pred ccCCCCccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC
Q 006920 426 NTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG 500 (625)
Q Consensus 426 n~~~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g 500 (625)
+-++.+++||||||||+.+|..++++| |.|||+.|++||+.+++.|++. ...++.|||||+.||+|||+++ ++
T Consensus 6 ~~~~~~~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~ 83 (258)
T 3kkk_A 6 HHHMTTYTLVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEK--NFKFDVVYTSVLKRAICTAWNVLKTAD 83 (258)
T ss_dssp ----CCEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred ccccceeEEEEEECCCccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECchHHHHHHHHHHHHhcC
Confidence 446788999999999999999999888 9999999999999999999865 5689999999999999999999 34
Q ss_pred ---CCcccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCc------------------------cCCCCCCCCCHH
Q 006920 501 ---FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYL 552 (625)
Q Consensus 501 ---~~v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~~------------------------~~~~~p~gES~~ 552 (625)
.++.+++.|+|+++|.|+|++.+++.+.+|+. +..|.... ...++|+|||+.
T Consensus 84 ~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~ 163 (258)
T 3kkk_A 84 LLHVPVVKTWRLNERHCGSLQGLNKSETAKKYGEEQVKIWRRSYDIPPPKLDKEDNRWPGHNVVYKNVPKDALPFTECLK 163 (258)
T ss_dssp CTTSCEEECGGGCCCCCGGGTTSBHHHHHHHTCHHHHHHHHHCSSCCCCCCCTTSTTCGGGCGGGTTSCGGGSCSCCCHH
T ss_pred CCCCCeeEccccceeccCcccCCCHHHHHHHhHHHHHHHHhhhcccCCcccccccccccccccccccccccCCCCCCCHH
Confidence 68899999999999999999999999999976 55665421 112478999999
Q ss_pred HHHHHHHHHHHHHH----cCCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEEE
Q 006920 553 DVIQRLEPVIIELE----RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEK 619 (625)
Q Consensus 553 d~~~Rv~~~i~~L~----~~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~~ 619 (625)
++.+|+..++.++. ..+++|||||||++|+++++++++.+...++.+.+++|++++|+++..+-...
T Consensus 164 ~~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 234 (258)
T 3kkk_A 164 DTVERVLPFWFDHIAPDILANKKVMVAAHGNSLRGLVKHLDNLSEADVLELNIPTGVPLVYELDENLKPIK 234 (258)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCHHHHHHCCCCTTCCEEEEECTTCCEEE
T ss_pred HHHHHHHHHHHHHHhhhccCCCEEEEEcCHHHHHHHHHHHhCCCHHHHhhccCCCCceEEEEECCCCceee
Confidence 99999999999953 36789999999999999999999999888888999999999999987644333
No 7
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=100.00 E-value=6.6e-33 Score=275.38 Aligned_cols=187 Identities=18% Similarity=0.205 Sum_probs=161.0
Q ss_pred CCCCccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCC
Q 006920 428 HLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFP 502 (625)
Q Consensus 428 ~~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~ 502 (625)
.|++++||||||||+.+|. .++| |.|||+.|++||+.+++.| +.+++.|||||+.||+|||+++ .+.+
T Consensus 2 ~m~~~~i~lvRHGet~~n~--~~~g~~D~pLt~~G~~QA~~~~~~l-----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~ 74 (213)
T 3hjg_A 2 SLKTLNIYLMRHGKVDAAP--GLHGQTDLKVKEAEQQQIAMAWKTK-----GYDVAGIISSPLSRCHDLAQILAEQQLLP 74 (213)
T ss_dssp --CEEEEEEEECCCCSSCS--BCCSSSCCCCCHHHHHHHHHHHHHT-----TCCCSCEEECSSHHHHHHHHHHHHHHTCC
T ss_pred CCceeEEEEECCCCcCCCC--cccCCCCCCCCHHHHHHHHHHHHhc-----CCCCCEEEECChHHHHHHHHHHHhccCCC
Confidence 4567899999999999873 5555 9999999999999998765 3689999999999999999999 5889
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCcEEEEechHHH
Q 006920 503 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-RAPVVVISHQAVL 581 (625)
Q Consensus 503 v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~-~~~VlIVsHg~vi 581 (625)
+.+++.|+|+++|.|+|++.+++.+.+| .+..|+.++..+.+|+|||+.++.+|+..+++++..+ .++|||||||++|
T Consensus 75 ~~~~~~L~E~~~G~~eg~~~~e~~~~~~-~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~vlvVsHg~~i 153 (213)
T 3hjg_A 75 MTTEDDLQEMDFGDFDGMPFDLLTEHWK-KLDAFWQSPAHHSLPNAESLSTFSQRVSRAWSQIINDINDNLLIVTHGGVI 153 (213)
T ss_dssp EEECGGGSCCCCTTSTTCBTTHHHHSCC-CTHHHHHCGGGCCCTTCCCHHHHHHHHHHHHHHHHHHCCSCEEEEECHHHH
T ss_pred cEEccccEeCcCCccCCcCHHHHHHhhH-HHHHHHhCcccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHH
Confidence 9999999999999999999999998866 4566778888899999999999999999999998653 4899999999999
Q ss_pred HHHHHHHhCCCC---CCCCCcccCCcEEEEEEEcCCeEEEEEEE
Q 006920 582 RALYAYFADRPL---KEIPHIETPLHTIIEIQMGVTGVQEKRYK 622 (625)
Q Consensus 582 r~Ll~~l~~~~~---~~~~~l~i~~~si~~l~~~~~g~~~~r~~ 622 (625)
+++++++++.+. .....+.++||++++|++...+.....++
T Consensus 154 ~~l~~~l~g~~~~~~~~~~~~~~~n~si~~l~~~~~~~~~~~l~ 197 (213)
T 3hjg_A 154 RIILAHVLGVDWRNPQWYSTLAIGNASVTHITITIDDQIYASVR 197 (213)
T ss_dssp HHHHHHHTTCCTTCTHHHHHBCCCTTEEEEEEEEESSSEEEEEC
T ss_pred HHHHHHHhCCCccccchhcccccCCCEEEEEEEeCCCCceEEEE
Confidence 999999999882 22346789999999999977766444443
No 8
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=100.00 E-value=2.9e-32 Score=277.77 Aligned_cols=188 Identities=23% Similarity=0.286 Sum_probs=165.4
Q ss_pred CCCCccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC--
Q 006920 428 HLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG-- 500 (625)
Q Consensus 428 ~~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g-- 500 (625)
|.-|-+.||||||||.||..++++| |+|||+.|++||+.+++.|+.. ..+++.|||||+.||+|||+++ ++
T Consensus 6 ~~~~~~~~lvRHGeT~~N~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~ 83 (257)
T 3gp3_A 6 HHHMYKLVLIRHGESTWNKENRFTGWVDVDLTEQGNREARQAGQLLKEA--GYTFDIAYTSVLKRAIRTLWHVQDQMDLM 83 (257)
T ss_dssp ---CEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCT
T ss_pred ccceeeEEEEECCCCcccccCccCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEeCChHHHHHHHHHHHHhcCCC
Confidence 3456789999999999999999999 9999999999999999999865 4689999999999999999999 44
Q ss_pred -CCcccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCcc------------------------CCCCCCCCCHHHH
Q 006920 501 -FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDV 554 (625)
Q Consensus 501 -~~v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~~~------------------------~~~~p~gES~~d~ 554 (625)
.++.+++.|+|+++|.|+|++.+++.+.+|+. +..|..+.. .+++|+|||+.++
T Consensus 84 ~~~i~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~~w~~~~~~~pp~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~~~ 163 (257)
T 3gp3_A 84 YVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLTECLKDT 163 (257)
T ss_dssp TSCEEECGGGSCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCTTCCCCCCCTTCTTCSTTCGGGTTSCGGGSCSSCCHHHH
T ss_pred CCceeECCCccccCCccccCCCHHHHHHHhhHHHHHHHHhccccCCcccccccccccccccccccccccCCCCCCCHHHH
Confidence 78999999999999999999999999999976 566654311 1357899999999
Q ss_pred HHHHHHHHHHHHc----CCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEE
Q 006920 555 IQRLEPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQ 617 (625)
Q Consensus 555 ~~Rv~~~i~~L~~----~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~ 617 (625)
.+|+..++.++.. .+++|||||||++|+++++++++.+...++.+.+++|++++|+++..+..
T Consensus 164 ~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~i~~ll~~l~g~~~~~~~~~~~~n~sv~~l~~~~~~~~ 230 (257)
T 3gp3_A 164 VARVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDADIVGLNIPNGVPLVYELDESLTP 230 (257)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCTTGGGGCCCCTTCCEEEEECTTSCE
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEeCcHHHHHHHHHHhCCCHHHHhhccCCCCeeEEEEECCCcce
Confidence 9999999999743 57899999999999999999999999999999999999999999876443
No 9
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=100.00 E-value=2.1e-32 Score=277.48 Aligned_cols=182 Identities=25% Similarity=0.311 Sum_probs=160.5
Q ss_pred CccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CC
Q 006920 431 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 502 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g---~~ 502 (625)
|++||||||||+.+|..++++| |.|||+.|++||+.+++.|+.. ..+++.|||||+.||+|||+++ ++ .+
T Consensus 2 M~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~l~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 79 (249)
T 1e58_A 2 VTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEE--GYSFDFAYTSVLKRAIHTLWNVLDELDQAWLP 79 (249)
T ss_dssp CEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTTSC
T ss_pred ceEEEEEeCCCCcccccCCccCcCCCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEECCcHHHHHHHHHHHHhcCCCCCC
Confidence 6899999999999999888888 9999999999999999999864 5689999999999999999999 33 67
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCc--------------------c----CCCCCCCCCHHHHHHH
Q 006920 503 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK--------------------L----RYRYPRGESYLDVIQR 557 (625)
Q Consensus 503 v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~~--------------------~----~~~~p~gES~~d~~~R 557 (625)
+.+++.|+|+++|.|+|++.+++.+.+|+. +..|..+. + ...+|+|||+.++.+|
T Consensus 80 ~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R 159 (249)
T 1e58_A 80 VEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR 159 (249)
T ss_dssp EEECGGGCCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCTTCCCCCCCTTSTTCGGGSGGGTTCCTTTSCSCCCHHHHHHH
T ss_pred eeeCcccccccCcccCCCcHHHHHHHhhHHHHHHHHhccccCCcccccccccccccchhhhccccCCCCCCCCHHHHHHH
Confidence 889999999999999999999999998865 56665431 1 1356899999999999
Q ss_pred HHHHHHH-HHc---CCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCC
Q 006920 558 LEPVIIE-LER---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT 614 (625)
Q Consensus 558 v~~~i~~-L~~---~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~ 614 (625)
+..++.+ |.. .+++|||||||++|+++++++++.+...++.+.+++|++++|+++..
T Consensus 160 v~~~l~~~i~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~n~~~~~l~~~~~ 220 (249)
T 1e58_A 160 VIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEFDEN 220 (249)
T ss_dssp HHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCHHHHHHCCCCTTCCEEEEECTT
T ss_pred HHHHHHHHHHhhccCCCEEEEEcChHHHHHHHHHHhCCCHHHHhhccCCCceeEEEEECCC
Confidence 9999999 653 57899999999999999999999988777778899999999999764
No 10
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=100.00 E-value=2.3e-32 Score=281.43 Aligned_cols=192 Identities=23% Similarity=0.257 Sum_probs=169.2
Q ss_pred CCccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---C
Q 006920 430 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---F 501 (625)
Q Consensus 430 ~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g---~ 501 (625)
.|++||||||||+.+|..++++| |.|||+.|++||+.+++.|++. ...++.|||||+.||+|||+.+ ++ .
T Consensus 26 mm~~i~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~d~v~sSpl~Ra~qTA~~i~~~~~~~~~ 103 (274)
T 4emb_A 26 FMYKLVLVRHGESEWNKENLFTGWTDVKLSDKGIDEAVEAGLLLKQE--GYSFDIAFSSLLSRANDTLNIILRELGQSYI 103 (274)
T ss_dssp CCEEEEEEECCCBTTTTTTCCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTS
T ss_pred hceEEEEEeCCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCC
Confidence 46899999999999999999888 9999999999999999999865 5689999999999999999999 34 5
Q ss_pred CcccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCc------------------------cCCCCCCCCCHHHHHH
Q 006920 502 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQ 556 (625)
Q Consensus 502 ~v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~~------------------------~~~~~p~gES~~d~~~ 556 (625)
++.+++.|+|+++|.|+|++.+++.+.+|+. +..|.... ..+.+|+|||+.++.+
T Consensus 104 ~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~pp~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~~~~~ 183 (274)
T 4emb_A 104 SVKKTWRLNERHYGALQGLNKSETAAKYGEDKVLIWRRSYDVPPMSLDESDDRHPIKDPRYKHIPKRELPSTECLKDTVA 183 (274)
T ss_dssp EEEECGGGSCCCCGGGTTCCHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTCGGGSGGGTTSCGGGSCSCCCHHHHHH
T ss_pred CeeECccccccccccccCCCHHHHHHHhHHHHHHHHHhccccCCcccccccccccccccccccccccCCCCCCCHHHHHH
Confidence 7889999999999999999999999999975 55665431 1236789999999999
Q ss_pred HHHHHHHHHHc----CCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEEEEEEc
Q 006920 557 RLEPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYKL 623 (625)
Q Consensus 557 Rv~~~i~~L~~----~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~~r~~l 623 (625)
|+.+++.++.. .+++|||||||++|+++++++++.+...++.+.+++|++++|+++..++..+.+.+
T Consensus 184 Rv~~~l~~l~~~~~~~~~~vlvVsHg~~i~~ll~~l~g~~~~~~~~~~~~n~sv~~l~~~~~~~~~~~~~l 254 (274)
T 4emb_A 184 RVIPYWTDEIAKEVLEGKKVIVAAHGNSLRALVKYFDNLSEEDVLKLNIPTGIPLVYELDKDLNPIKHYYL 254 (274)
T ss_dssp HHHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHHTCCHHHHHHCCCCTTCCEEEEECTTCCEEEEEEC
T ss_pred HHHHHHHHHHhhhhcCCCEEEEEeCHHHHHHHHHHHhCCCHHHHhhccCCCCeEEEEEEcCCCcEEEeeec
Confidence 99999999743 67899999999999999999999998888889999999999999988777665543
No 11
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=99.98 E-value=6.1e-32 Score=277.44 Aligned_cols=186 Identities=23% Similarity=0.326 Sum_probs=162.9
Q ss_pred CccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CC
Q 006920 431 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 502 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g---~~ 502 (625)
|++||||||||+.+|..++++| |.|||+.|++||+.+++.|.+. ...++.|||||+.||+|||+++ ++ .+
T Consensus 20 M~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 97 (267)
T 3d8h_A 20 TYKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEK--GFKFDVVYTSVLKRAIMTTWTVLKELGNINCP 97 (267)
T ss_dssp CEEEEEEECCCBTTTTTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTTSC
T ss_pred ceEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCCC
Confidence 5799999999999999988888 9999999999999999999864 4689999999999999999999 33 67
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCc--------------------c----CCCCCCCCCHHHHHHH
Q 006920 503 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK--------------------L----RYRYPRGESYLDVIQR 557 (625)
Q Consensus 503 v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~~--------------------~----~~~~p~gES~~d~~~R 557 (625)
+.+++.|+|+++|.|+|++..++.+.+|.. +..|..+. + .+.+|+|||+.++.+|
T Consensus 98 i~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R 177 (267)
T 3d8h_A 98 IINHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKSDPRWPGNELIYKGICPSCLPTTECLKDTVER 177 (267)
T ss_dssp EEECGGGSCCCCGGGTTCBHHHHHHHSCHHHHHHHHHCSSCCCCCCCTTSTTSGGGSGGGTTSCGGGSCSCCCHHHHHHH
T ss_pred eeECcccccccCCcccCCCHHHHHHhhhHHHHHHHHhccccCCcccccccccccccchhhhccccCCCCCCCCHHHHHHH
Confidence 889999999999999999999999999975 55665431 1 1356899999999999
Q ss_pred HHHHHHH-HHc---CCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEE
Q 006920 558 LEPVIIE-LER---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQE 618 (625)
Q Consensus 558 v~~~i~~-L~~---~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~ 618 (625)
+..++++ |.. .+++|||||||++|+++++++++.+...++.+.+++|++++|+++..++..
T Consensus 178 v~~~l~~~i~~~~~~~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~~~n~~v~~l~~~~~~~~~ 242 (267)
T 3d8h_A 178 VKPYFEDVIAPSIMSGKSVLVSAHGNSLRALLYLLEGMTPEQILEVNIPTACPLVLELDDYLKVT 242 (267)
T ss_dssp HHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHHTCCHHHHTTCCCCTTCCEEEEECTTSCEE
T ss_pred HHHHHHHHHHhhccCCCeEEEEeCHHHHHHHHHHHhCCCHHHhhcccCCCCeEEEEEECCCccEE
Confidence 9999999 653 577999999999999999999999888788889999999999997765543
No 12
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=99.98 E-value=4.1e-32 Score=278.66 Aligned_cols=183 Identities=26% Similarity=0.336 Sum_probs=160.9
Q ss_pred CCCccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---
Q 006920 429 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG--- 500 (625)
Q Consensus 429 ~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g--- 500 (625)
|++++||||||||+.+|..++++| |.|||+.|++||+.+++.|... ...++.|||||+.||+|||+++ ++
T Consensus 1 M~~~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~ 78 (267)
T 2hhj_A 1 MSKYKLIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKAL--NFEFDLVFTSVLNRSIHTAWLILEELGQEW 78 (267)
T ss_dssp -CCEEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTT
T ss_pred CCceEEEEEeCCCCCccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCcCEEEECCcHHHHHHHHHHHHhcCCCC
Confidence 456899999999999999888888 9999999999999999999864 4689999999999999999999 33
Q ss_pred CCcccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcC--------------------ccCC--------CCCCCCCH
Q 006920 501 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKD--------------------KLRY--------RYPRGESY 551 (625)
Q Consensus 501 ~~v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~--------------------~~~~--------~~p~gES~ 551 (625)
.++.+++.|+|+++|.|+|++..++.+.+|+. +..|..+ ...+ .+|+|||+
T Consensus 79 ~~v~~~~~L~E~~~G~~eG~~~~e~~~~~p~~~~~~w~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~p~gEs~ 158 (267)
T 2hhj_A 79 VPVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESL 158 (267)
T ss_dssp SCEEECGGGSCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTHHHHHTCGGGTSSSSCGGGSCSSCCH
T ss_pred CCeeEcccccccccCCCCCCCHHHHHHHhhHHHHHHHHhcccCCCCcccccccccccccccccccccccccCCCCCCCCH
Confidence 68889999999999999999999999999876 5566421 1122 26899999
Q ss_pred HHHHHHHHHHHHH-HHc---CCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcC
Q 006920 552 LDVIQRLEPVIIE-LER---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV 613 (625)
Q Consensus 552 ~d~~~Rv~~~i~~-L~~---~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~ 613 (625)
.++.+|+..++.+ |.. .+++|||||||++|+++++++++.+...++.+.+++|+++.|+++.
T Consensus 159 ~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~~~n~s~~~~~~~~ 224 (267)
T 2hhj_A 159 KDVLERLLPYWNERIAPEVLRGKTILISAHGNSSRALLKHLEGISDEDIINITLPTGVPILLELDE 224 (267)
T ss_dssp HHHHHHHHHHHHHHTHHHHHTTCCEEEEECHHHHHHHHHHHHTCCTTGGGGCCCCTTCCEEEEECT
T ss_pred HHHHHHHHHHHHHHHHhhccCCCEEEEEcCcHHHHHHHHHHhCCCHHHhhccccCCCeEEEEEEcC
Confidence 9999999999999 653 5689999999999999999999999988888999999999999975
No 13
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=99.97 E-value=5.9e-32 Score=272.69 Aligned_cols=184 Identities=24% Similarity=0.322 Sum_probs=160.4
Q ss_pred ccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CCc
Q 006920 432 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 503 (625)
Q Consensus 432 ~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g---~~v 503 (625)
|+||||||||+.+|..++++| |.|||+.|++||+.+++.|+.. ..+++.|||||+.||+|||+++ ++ .++
T Consensus 1 m~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 78 (240)
T 1qhf_A 1 PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEK--KVYPDVLYTSKLSRAIQTANIALEKADRLWIPV 78 (240)
T ss_dssp CEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTSCE
T ss_pred CEEEEEECCCcccccCCcccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCcCEEEECCcHHHHHHHHHHHHhcCCCCCCe
Confidence 579999999999999888888 9999999999999999999864 5689999999999999999999 23 678
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCcc------------------------CCCCCCCCCHHHHHHHH
Q 006920 504 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQRL 558 (625)
Q Consensus 504 ~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~~~------------------------~~~~p~gES~~d~~~Rv 558 (625)
.+++.|+|+++|.|+|++.+++.+.+|+. +..|..+.. ...+|+|||+.++.+|+
T Consensus 79 ~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~ 158 (240)
T 1qhf_A 79 NRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRL 158 (240)
T ss_dssp EECGGGSCCCCGGGTTCBHHHHHHHHHHHHHHHHHHCSSCCCCCCCTTSTTCCTTCGGGTTSCGGGSCSSCCHHHHHHHH
T ss_pred eeCcccccccCCcccCCcHHHHHHHhhHHHHHHHhhccccCCccccccchhhcccchhhcccccCCCCCCCCHHHHHHHH
Confidence 89999999999999999999999999865 456643210 12458999999999999
Q ss_pred HHHHHH-HHc---CCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEE
Q 006920 559 EPVIIE-LER---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQE 618 (625)
Q Consensus 559 ~~~i~~-L~~---~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~ 618 (625)
..++.+ +.. .+++|||||||++|+++++++++.+...++.+.+++|+++.|+++ .+|..
T Consensus 159 ~~~l~~~i~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 221 (240)
T 1qhf_A 159 LPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELD-ENLKP 221 (240)
T ss_dssp HHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHHTCCTTTGGGCCCCTTSCEEEEBC-TTSCB
T ss_pred HHHHHHHHHhhccCCCEEEEEeCHHHHHHHHHHHhCCCHHHhhcccCCCCeeEEEEEc-CCCCe
Confidence 999998 653 468899999999999999999999998888899999999999987 44543
No 14
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET: CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Probab=99.97 E-value=9.3e-32 Score=275.24 Aligned_cols=184 Identities=24% Similarity=0.275 Sum_probs=160.0
Q ss_pred CCCccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---
Q 006920 429 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG--- 500 (625)
Q Consensus 429 ~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g--- 500 (625)
|.|++||||||||+.+|..++++| |.|||+.|++||+.+++.|++. ...++.|||||+.||+|||+++ ++
T Consensus 1 m~M~~l~LvRHGqt~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~ 78 (262)
T 1yfk_A 1 MAAYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDA--GYEFDICFTSVQKRAIRTLWTVLDAIDQMW 78 (262)
T ss_dssp --CEEEEEEECCCBTTTTTTBCCTTSCCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEECSCHHHHHHHHHHHHHTTCTT
T ss_pred CCceEEEEEeCCCcccccccCcCCCCCCCCCHHHHHHHHHHHHHHHhC--CCCCCEEEECCcHHHHHHHHHHHHhcCCCC
Confidence 356899999999999999988888 9999999999999999999865 5689999999999999999999 33
Q ss_pred CCcccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCc--------------------cC------CCCCCCCCHHH
Q 006920 501 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK--------------------LR------YRYPRGESYLD 553 (625)
Q Consensus 501 ~~v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~~--------------------~~------~~~p~gES~~d 553 (625)
.++..++.|+|+++|.|+|++.+++.+.+|+. +..|..+. .. ..+|+|||+.+
T Consensus 79 ~~v~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~~i~~d~~~~~~~~~~~p~gEs~~~ 158 (262)
T 1yfk_A 79 LPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKD 158 (262)
T ss_dssp SCEEECGGGSCCCCGGGTTSBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTHHHHHTCGGGTTSCTTTSCSCCCHHH
T ss_pred CCeeeCcccccccCcccCCCcHHHHHHHccHHHHHHHHhccccCCCcccccccccccccccccccccccCCCCCCCCHHH
Confidence 67888999999999999999999999998865 55564321 01 24689999999
Q ss_pred HHHHHHHHHHHHH----cCCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCC
Q 006920 554 VIQRLEPVIIELE----RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT 614 (625)
Q Consensus 554 ~~~Rv~~~i~~L~----~~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~ 614 (625)
+.+|+.++++++. ..+++|||||||++|+++++++++.+...++.+.+++|++++|+++..
T Consensus 159 ~~~Rv~~~l~~li~~~~~~~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 223 (262)
T 1yfk_A 159 TIARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNLPTGIPIVYELDKN 223 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHHHTCCHHHHHTCCCCSSSCEEEEECTT
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEEcChHHHHHHHHHHhCCCHHHHhccCCCCCeEEEEEEcCC
Confidence 9999999999953 357899999999999999999999988777788999999999998765
No 15
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.45A {Mycobacterium leprae}
Probab=99.97 E-value=4e-32 Score=278.91 Aligned_cols=185 Identities=25% Similarity=0.316 Sum_probs=163.3
Q ss_pred CccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CC
Q 006920 431 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 502 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g---~~ 502 (625)
+++||||||||+.+|..++++| |.|||+.|++||+.+++.|++. ...++.|||||+.||+|||+++ ++ .+
T Consensus 27 ~~~i~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 104 (268)
T 4eo9_A 27 TATLILLRHGESDWNARNLFTGWVDVGLTDKGRAEAVRSGELLAEH--NLLPDVLYTSLLRRAITTAHLALDTADWLWIP 104 (268)
T ss_dssp CEEEEEEECCCBHHHHTTCCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTSC
T ss_pred ceEEEEEECCccccccCCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHhcCCCCCC
Confidence 4789999999999999989888 9999999999999999999865 5689999999999999999999 33 78
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCccCC----------------------CCCCCCCHHHHHHHHH
Q 006920 503 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKLRY----------------------RYPRGESYLDVIQRLE 559 (625)
Q Consensus 503 v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~~~~~----------------------~~p~gES~~d~~~Rv~ 559 (625)
+.+++.|+|+++|.|+|++.+++.+.+|+. +..|..+.... ++|+|||+.++.+|+.
T Consensus 105 ~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~gEs~~~~~~Rv~ 184 (268)
T 4eo9_A 105 VRRSWRLNERHYGALQGLDKAVTKARYGEERFMAWRRSYDTPPPPIEKGSEFSQDADPRYTDIGGGPLTECLADVVTRFL 184 (268)
T ss_dssp EEECGGGSCCCCGGGTTCCHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTCCTTCGGGGGGTTCCSCCCHHHHHHHHH
T ss_pred eEECccccccccCCcCCCCHHHHHHHccHHHHHHhhcccccCCccccccccccccccccccccCCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999975 66676543211 3479999999999999
Q ss_pred HHHHHHH----cCCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEE
Q 006920 560 PVIIELE----RQRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQ 617 (625)
Q Consensus 560 ~~i~~L~----~~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~ 617 (625)
.++.++. ..+++|||||||++|+++++++++.+.+.++.+.+++|++++|+++..+..
T Consensus 185 ~~l~~~i~~~~~~~~~vlvVsHg~~i~~l~~~l~g~~~~~~~~~~~~n~~i~~l~~~~~~~~ 246 (268)
T 4eo9_A 185 PYFTDVIVPDLRTGRTVLIVAHGNSLRALVKHLDEMSDDEVVGLNVPTGIPLRYDLDADLRP 246 (268)
T ss_dssp HHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCHHHHHTCCCCSSCCEEEEECTTSCB
T ss_pred HHHHHHHHHhccCCCEEEEEeCHHHHHHHHHHHhCCCHHHHhhccCCCCeEEEEEECCCCcE
Confidence 9998742 257899999999999999999999998888899999999999999876543
No 16
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=99.97 E-value=2.6e-31 Score=265.34 Aligned_cols=178 Identities=14% Similarity=0.097 Sum_probs=153.5
Q ss_pred ccCCCCccEEEeccccccCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCC
Q 006920 426 NTHLTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFP 502 (625)
Q Consensus 426 n~~~~~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~ 502 (625)
|++-+||+||||||||+.+|..+++ .|.|||+.|++||+.+++.|+.. +++.|||||+.||+|||++| ++.+
T Consensus 16 ~~~~~mm~l~LvRHGet~~n~~~~~-~D~pLt~~G~~QA~~l~~~L~~~----~~d~i~sSpl~Ra~qTA~~i~~~~~~~ 90 (219)
T 2qni_A 16 NLYFQGMHALYITHPQVKIDPAVPV-PEWGLSERGAERAREASRLPWAK----ALRRIVSSAETKAIETAHMLAETSGAA 90 (219)
T ss_dssp -----CCEEEEEECCCBCCCSSSCG-GGCCBCHHHHHHHHHHHTSHHHH----TCCEEEECSSHHHHHHHHHHTTTTCCE
T ss_pred hhhhcCcEEEEEeCCCCcccccCcc-CCCCcCHHHHHHHHHHHHHHhcC----CCCEEEECCcHHHHHHHHHHHHhcCCC
Confidence 4445578999999999999987766 49999999999999999998754 79999999999999999999 4678
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcC---CCcEEEEechH
Q 006920 503 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ---RAPVVVISHQA 579 (625)
Q Consensus 503 v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~---~~~VlIVsHg~ 579 (625)
+.+++.|+|+++|.|+|++.+++. +.+..|..++. +.+|+|||+.++.+|+..++.++..+ +++|||||||+
T Consensus 91 ~~~~~~L~E~~~G~~eg~~~~~~~----~~~~~~~~~~~-~~~p~gEs~~~~~~Rv~~~l~~l~~~~~~~~~vlvVsHg~ 165 (219)
T 2qni_A 91 IEIIEAMHENDRSATGFLPPPEFE----KAADWFFAHPE-ESFQGWERAIDAQARIVEAVKAVLDRHDARQPIAFVGHGG 165 (219)
T ss_dssp EEECGGGCCCCCGGGCCCCHHHHH----HHHHHHHHCTT-SCSTTCCCHHHHHHHHHHHHHHHHHTCCTTSCEEEEECHH
T ss_pred EEECcccccCCCccccCccHHHHH----HHHHHHHhCcc-cCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEeCHH
Confidence 899999999999999999988764 45677877754 77899999999999999999999764 25899999999
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcC
Q 006920 580 VLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV 613 (625)
Q Consensus 580 vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~ 613 (625)
+|+++++++++.+....+.+.+++|++++|+++.
T Consensus 166 ~i~~l~~~l~~~~~~~~~~~~~~n~si~~l~~~~ 199 (219)
T 2qni_A 166 VGTLLKCHIEGRGISRSKDQPAGGGNLFRFSIAE 199 (219)
T ss_dssp HHHHHHHHHHTCCCCCC--CCTTSCEEEEEEHHH
T ss_pred HHHHHHHHHhCcCHHHHhhccCCCeeEEEEEecC
Confidence 9999999999999988888899999999998754
No 17
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=99.97 E-value=9.9e-32 Score=275.86 Aligned_cols=182 Identities=26% Similarity=0.349 Sum_probs=159.3
Q ss_pred CccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CC
Q 006920 431 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 502 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g---~~ 502 (625)
|++||||||||+.||..++++| |.|||+.|++||+.+++.|.+. ...++.|||||+.||+|||+++ ++ .+
T Consensus 4 m~~l~LvRHGet~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 81 (265)
T 1rii_A 4 TGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEH--DLLPDVLYTSLLRRAITTAHLALDSADRLWIP 81 (265)
T ss_dssp CCEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSCHHHHHHHHHHHHHTTCTTSC
T ss_pred ceEEEEEeCCCCcccccCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999888888 9999999999999999999865 5689999999999999999999 33 67
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHH-HHHHhcCcc------------------CCC----CCCCCCHHHHHHHHH
Q 006920 503 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------RYR----YPRGESYLDVIQRLE 559 (625)
Q Consensus 503 v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-~~~~~~~~~------------------~~~----~p~gES~~d~~~Rv~ 559 (625)
+..++.|+|+++|.|+|++..++.+++|++ +..|..+.. .|. .|+|||+.++.+|+.
T Consensus 82 v~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~p~gEs~~~~~~Rv~ 161 (265)
T 1rii_A 82 VRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGGPLTECLADVVARFL 161 (265)
T ss_dssp EEECGGGSCCCCGGGTTSBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTCTTCCTTCGGGGGGTTCCSCCCHHHHHHHHH
T ss_pred eeECccccccccccccCCCHHHHHHHchHHHHHHHHhccccCCCccccccccccccchhhccCCCCCCCCCHHHHHHHHH
Confidence 889999999999999999999999999876 556654310 111 189999999999999
Q ss_pred HHHHH-HHc---CCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCC
Q 006920 560 PVIIE-LER---QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT 614 (625)
Q Consensus 560 ~~i~~-L~~---~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~ 614 (625)
+++.+ |.. .+++|||||||++|+++++++++.+...++.+.+++|++++|+++..
T Consensus 162 ~~l~~~i~~~~~~~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~ 220 (265)
T 1rii_A 162 PYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSA 220 (265)
T ss_dssp HHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCHHHHHHCCCCSSCCEEEEBCTT
T ss_pred HHHHHHHHHhccCCCeEEEEeChHHHHHHHHHHcCCCHHHHhhcCCCCCeEEEEEECCC
Confidence 99998 643 57899999999999999999999988877888999999999998743
No 18
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=99.97 E-value=4.7e-31 Score=265.45 Aligned_cols=183 Identities=17% Similarity=0.187 Sum_probs=157.7
Q ss_pred CCccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc------CC
Q 006920 430 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GF 501 (625)
Q Consensus 430 ~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~------g~ 501 (625)
++++||||||||+.+|..++++| |+|||+.|++||+.+++.|. ..+++.|||||+.||+|||+++. +.
T Consensus 12 ~~~~l~lvRHGet~~n~~~~~~G~~D~pLt~~G~~qA~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~ 87 (237)
T 3r7a_A 12 NVVTLYVTRHGKTILNTNHRAQGWADSPLVEKGVEVATNLGTGLK----DIHFMNAYSSDSGRAIETANLVLKYSEQSKL 87 (237)
T ss_dssp CEEEEEEEECCCBHHHHTTBCCSSCCCCBCHHHHHHHHHHHHHTT----TSCEEEEEECSCHHHHHHHHHHHHHTTCTTS
T ss_pred CceEEEEEeCCcccccccccccCCCCCCcCHHHHHHHHHHHHHhc----CCCCCEEEECCcHHHHHHHHHHHHhcccCCC
Confidence 45899999999999999888888 99999999999999998876 56899999999999999999992 47
Q ss_pred CcccccccccccCCcCCCCCHHHHHhhChHH----------------HHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHH
Q 006920 502 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE----------------YEARKKDKLRYRYPRGESYLDVIQRLEPVIIEL 565 (625)
Q Consensus 502 ~v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~----------------~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L 565 (625)
++.+++.|+|+++|.|+|++..++.+.+|.. +..|.... ..+|+|||+.++.+|+..++.+|
T Consensus 88 ~~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gEs~~~~~~R~~~~l~~l 165 (237)
T 3r7a_A 88 KLEQRKKLRELNFGIFEGEKLDNMWDAVGKAAGVTSPEELLKFSIQEVIDLIRAA--DPTKQAEDWELFSTRIKAEIDKI 165 (237)
T ss_dssp CEEECGGGCCCCCGGGTTSBHHHHHHHHHHHHTCSSGGGGGGSCHHHHHHHHHHH--CTTCCSCCHHHHHHHHHHHHHHH
T ss_pred CeeeCCCCcccCcchhcCCCHHHHHHHhhhhcCCCCHHHHHHhhhhhhhHHHhhc--CCCCCCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999988765432 33444331 25789999999999999999999
Q ss_pred Hc-----CCCcEEEEechHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCCeEEEEEEE
Q 006920 566 ER-----QRAPVVVISHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVTGVQEKRYK 622 (625)
Q Consensus 566 ~~-----~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~g~~~~r~~ 622 (625)
.. .+++|||||||++|+++++++++. .+.+.++||++++|++..++|....+|
T Consensus 166 ~~~~~~~~~~~vlvVsHg~~i~~l~~~l~~~----~~~~~~~n~sv~~l~~~~~~~~l~~~n 223 (237)
T 3r7a_A 166 SEEAAKDGGGNVLVVVHGLLITTLIEMLDSS----KTKLGVENASVTKIVYQDGIYTVESVG 223 (237)
T ss_dssp HHHHHHTTCEEEEEEECHHHHHHHHHHHHGG----GCCSCCCTTCEEEEEEETTEEEECCSS
T ss_pred HHHhhcCCCCeEEEEcCHHHHHHHHHHhccc----cccCCCCCceEEEEEEECCEEEEEEee
Confidence 65 367999999999999999999842 366789999999999998888776554
No 19
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.40A {Thermus thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A 2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A 2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A 2enw_A ...
Probab=99.97 E-value=2.6e-31 Score=256.57 Aligned_cols=164 Identities=27% Similarity=0.364 Sum_probs=148.9
Q ss_pred ccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCCCccccccc
Q 006920 432 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRAL 509 (625)
Q Consensus 432 ~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~g~~v~~~~~L 509 (625)
|+|||||||++.+|..++++| |.|||+.|++||+.+++.|. ..+ |||||+.||+|||++ ++.++.+++.|
T Consensus 1 m~l~lvRHG~t~~n~~~~~~g~~d~pLt~~G~~qA~~l~~~l~----~~~---i~sSpl~Ra~qTA~~-l~~~~~~~~~L 72 (177)
T 1v37_A 1 MELWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALP----SLP---AFSSDLLRARRTAEL-AGFSPRLYPEL 72 (177)
T ss_dssp CEEEEEECCCCHHHHHTBCCSSCCCCCCHHHHHHHHHHTTTSC----SCC---EEECSSHHHHHHHHH-TTCCCEECGGG
T ss_pred CEEEEEeCCCCcccccCcccCCCCCCcCHHHHHHHHHHHHHhc----CCC---EEECCcHHHHHHHHH-hCCCcEECccc
Confidence 579999999999998877777 99999999999999998764 223 999999999999999 48889999999
Q ss_pred ccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEechHHHHHHHHHHh
Q 006920 510 DEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFA 589 (625)
Q Consensus 510 ~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~~~~VlIVsHg~vir~Ll~~l~ 589 (625)
+|+++|.|+|++.+++.+.+|+.+..| ..+.+|+|||+.++.+|+..++.++ . ++|||||||++|++++++++
T Consensus 73 ~E~~~G~~eg~~~~e~~~~~~~~~~~~----~~~~~p~gEs~~~~~~R~~~~l~~l-~--~~vlvVsHg~~i~~l~~~l~ 145 (177)
T 1v37_A 73 REIHFGALEGALWETLDPRYKEALLRF----QGFHPPGGESLSAFQERVFRFLEGL-K--APAVLFTHGGVVRAVLRALG 145 (177)
T ss_dssp SCCCCGGGTTCBGGGSCHHHHHHHHTT----CSCCCTTSCCHHHHHHHHHHHHHHC-C--SCEEEEECHHHHHHHHHHTT
T ss_pred eeCCCCcccCCCHHHHHHHCHHHHHHh----hcCCCCCCCCHHHHHHHHHHHHHHc-C--CCEEEEcCHHHHHHHHHHHc
Confidence 999999999999999999999988887 4678899999999999999999999 5 78999999999999999999
Q ss_pred CCCCCCCCCcccCCcEEEEEEEcCCeEE
Q 006920 590 DRPLKEIPHIETPLHTIIEIQMGVTGVQ 617 (625)
Q Consensus 590 ~~~~~~~~~l~i~~~si~~l~~~~~g~~ 617 (625)
+ .+.+++|+++.|+++..+|.
T Consensus 146 ~-------~~~~~~~~i~~~~~~~~~~~ 166 (177)
T 1v37_A 146 E-------DGLVPPGSAVAVDWPRRVLV 166 (177)
T ss_dssp S-------CCCCCTTCEEEEETTTEEEE
T ss_pred C-------CCCCCCCEEEEEEEeCCeeE
Confidence 8 35789999999999887775
No 20
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio} PDB: 3e9d_A 3e9e_A
Probab=99.97 E-value=1.9e-30 Score=266.03 Aligned_cols=186 Identities=24% Similarity=0.292 Sum_probs=123.3
Q ss_pred CCCccEEEeccccccCCCCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---c---
Q 006920 429 LTPRPILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A--- 499 (625)
Q Consensus 429 ~~~~~I~LVRHGes~~n~~~~~~g---D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~--- 499 (625)
|.+++||||||||+.+|..+.++| |+|||+.|++||+.+++.|. ...++.|||||+.||+|||+++ +
T Consensus 1 m~~~~l~LvRHGet~~n~~~~~~G~~~D~pLt~~G~~QA~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~ 76 (265)
T 3e9c_A 1 MLTFALTIVRHGETQYNRDKLLQGQGIDTPLSDTGHQQAAAAGRYLK----DLHFTNVFVSNLQRAIQTAEIILGNNLHS 76 (265)
T ss_dssp CEEEEEEEEECCCC-------------CCCCCHHHHHHHHHHHHHTT----TCCCSEEEECSSHHHHHHHHHHHHTCSSC
T ss_pred CcccEEEEEeCCCccccccCcccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEECCcHHHHHHHHHHHHhcccc
Confidence 345889999999999999888876 99999999999999998875 5689999999999999999999 2
Q ss_pred -CCCcccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcC----------
Q 006920 500 -GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ---------- 568 (625)
Q Consensus 500 -g~~v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~---------- 568 (625)
+.++.+++.|+|+++|.|+|++..++.+.++ .|..++..+.+|+|||+.++..|+..++++|.+.
T Consensus 77 ~~~~v~~~~~L~E~~~G~~eg~~~~ei~~~~~----~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~e~~~~~~ 152 (265)
T 3e9c_A 77 SATEMILDPLLRERGFGVAEGRPKEHLKNMAN----AAGQSCRDYTPPGGETLEQVKTRFKMFLKSLFQRMFEEHGSALS 152 (265)
T ss_dssp TTCCEEECGGGSCCCCC---------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHCSSSC
T ss_pred CCCCeEECccceeCcCCCCCCCCHHHHHHHHH----HhccCCccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 6689999999999999999999999987665 4555667889999999999999999999998653
Q ss_pred ----------------------CCcEEEEechHHHHHHHHHHhCC-----CCC--CCCCccc-CCcEEEEEEEcC----C
Q 006920 569 ----------------------RAPVVVISHQAVLRALYAYFADR-----PLK--EIPHIET-PLHTIIEIQMGV----T 614 (625)
Q Consensus 569 ----------------------~~~VlIVsHg~vir~Ll~~l~~~-----~~~--~~~~l~i-~~~si~~l~~~~----~ 614 (625)
+++|||||||++|+++++++++. +.. ....+.+ +||+|+.+.... +
T Consensus 153 ~~~~~~~~p~~~~~~e~~~~~~~~~vlvVsHg~~i~~ll~~ll~~~~~~~p~~~~~~~~~~v~~n~sit~~~~~~~~~~g 232 (265)
T 3e9c_A 153 SVPSEADQPVIAGLADDGAQNVPVHALMVSHGAFIRISVRHLVEDLQCCLPAGLKMNQVFSPCPNTGISRFIFTIHREES 232 (265)
T ss_dssp C----CCCCCCCSSTTTTCTTCCCEEEEEECHHHHHHHHHHHHHTSCEEECTTCCHHHHTSCCCTTCEEEEEEEEEEETT
T ss_pred ccccccccccccccccccccCCCCeEEEEeCHHHHHHHHHHHHcccccccccchhHHhcccCCCCCeeEEEEEEEecccC
Confidence 56899999999999999999853 222 1112344 899998888765 3
Q ss_pred -----eEEEEEEE
Q 006920 615 -----GVQEKRYK 622 (625)
Q Consensus 615 -----g~~~~r~~ 622 (625)
++....+|
T Consensus 233 ~~~~~~~~l~~~N 245 (265)
T 3e9c_A 233 VLRATRIQGVFIN 245 (265)
T ss_dssp EEEEEEEEEEEEE
T ss_pred CccCceeEEEEeC
Confidence 45555555
No 21
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote structure initiative; 1.75A {Saccharomyces cerevisiae} PDB: 3lg2_A 3oi7_A* 3ll4_A*
Probab=99.96 E-value=7.2e-30 Score=261.55 Aligned_cols=186 Identities=19% Similarity=0.190 Sum_probs=155.1
Q ss_pred CCCCccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHh---cCCCCCEEEEcCcHHHHHHHHHhc---
Q 006920 428 HLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRL---KSERAASIWTSTLQRTILTASPIA--- 499 (625)
Q Consensus 428 ~~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l---~~~~~~~I~sSpl~Ra~qTA~~i~--- 499 (625)
.+.+++||||||||+.+|..++++| |.|||+.|++||+.+++.|.+.. ....++.|||||+.||+|||+++.
T Consensus 2 p~~~~~l~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~~~~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~ 81 (265)
T 3f3k_A 2 PSLTPRCIIVRHGQTEWSKSGQYTGLTDLPLTPYGEGQMLRTGESVFRNNQFLNPDNITYIFTSPRLRARQTVDLVLKPL 81 (265)
T ss_dssp -CCCCEEEEEECCCCHHHHHTCCCSSCCCCCCHHHHHHHHHHHHHHHTC-CCSCGGGEEEEEECSSHHHHHHHHHHTTTS
T ss_pred CCCCcEEEEEECCCCccccccCccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCCCCEEEECCHHHHHHHHHHHHHhc
Confidence 3567899999999999999888888 99999999999999999997521 114688999999999999999993
Q ss_pred ------CCCcccccccccccCCcCCCCCHHHHHhhChHH-------HHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 006920 500 ------GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-------YEARKKDKLRYRYPRGESYLDVIQRLEPVIIELE 566 (625)
Q Consensus 500 ------g~~v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~-------~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~ 566 (625)
+.++.+++.|+|+++|.|+|++.+++++.+|+. +..|. ..+|+|||+.++.+|+..++.+|.
T Consensus 82 ~~~~~~~~~~~~~~~L~E~~~G~~eg~~~~ei~~~~~~~~~~~~~~~~~w~-----~~~p~gEs~~~~~~R~~~~l~~l~ 156 (265)
T 3f3k_A 82 SDEQRAKIRVVVDDDLREWEYGDYEGMLTREIIELRKSRGLDKERPWNIWR-----DGCENGETTQQIGLRLSRAIARIQ 156 (265)
T ss_dssp CHHHHHTSEEEECGGGSCCCCGGGTTCCHHHHHHHHHHTTCCSSSCCCHHH-----HCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCeEEcCCceeeccCccCCCcHHHHHHHhhhccccccchhhhhc-----cCCCCCCCHHHHHHHHHHHHHHHH
Confidence 267899999999999999999999999988742 22232 347899999999999999999997
Q ss_pred cC---------CCcEEEEechHHHHHHHHHHhCCCC--------------------------------CCCCCcccCCcE
Q 006920 567 RQ---------RAPVVVISHQAVLRALYAYFADRPL--------------------------------KEIPHIETPLHT 605 (625)
Q Consensus 567 ~~---------~~~VlIVsHg~vir~Ll~~l~~~~~--------------------------------~~~~~l~i~~~s 605 (625)
+. +++|||||||++|+++++++++++. .....+.++.++
T Consensus 157 ~~~~~~~~~~~~~~vliVsHg~~ir~l~~~l~g~~~~~~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~~~~~~~~l~~g~ 236 (265)
T 3f3k_A 157 NLHRKHQSEGRASDIMVFAHGHALRYFAAIWFGLGVQKKCETIEEIQNVKSYDDDTVPYVKLESYRHLVDNPCFLLDAGG 236 (265)
T ss_dssp HHHHHHHHTTCCCEEEEEECHHHHHHHHHHHTTCSEEEECCSHHHHCCCCCCCCTTSCCCCCSEEEECSSCCCEECCTTC
T ss_pred HHhhhhhccCCCCcEEEEeChHHHHHHHHHHhCCCHHHhhhhhcCcccccccccccccccccccccccCCCcceeecCCc
Confidence 53 5789999999999999999999665 333556788888
Q ss_pred EEEEEEcCCeEEE
Q 006920 606 IIEIQMGVTGVQE 618 (625)
Q Consensus 606 i~~l~~~~~g~~~ 618 (625)
+..+.+..+.+.+
T Consensus 237 ~~vl~~~~~~~~~ 249 (265)
T 3f3k_A 237 IGVLSYAHHNIDE 249 (265)
T ss_dssp EEEEEESTTCTTS
T ss_pred eeeecccCCCcCc
Confidence 8888887655433
No 22
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced glycolysis and apoptosis regulator, CAsp target, structural genomics medical relevance; HET: MSE; 1.75A {Homo sapiens}
Probab=99.96 E-value=1.3e-29 Score=261.12 Aligned_cols=179 Identities=25% Similarity=0.269 Sum_probs=153.1
Q ss_pred ccCCCCccEEEeccccccCCCCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc---
Q 006920 426 NTHLTPRPILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA--- 499 (625)
Q Consensus 426 n~~~~~~~I~LVRHGes~~n~~~~~~g---D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~--- 499 (625)
+.++.+++||||||||+.+|..+.++| |.|||+.|++||+.+++.|. ...++.|||||+.||+|||+++.
T Consensus 3 ~~~~~~~~i~LvRHGet~~n~~~~~~G~~~D~~Lt~~G~~QA~~l~~~l~----~~~~~~v~sSpl~Ra~qTA~~i~~~~ 78 (275)
T 3dcy_A 3 YFQSARFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLN----NVKFTHAFSSDLMRTKQTMHGILERS 78 (275)
T ss_dssp EECCEEEEEEEEECCCBHHHHHTBCCSSSSCCCBCHHHHHHHHHHHHHTT----TCCCSEEEECSSHHHHHHHHHHHTTC
T ss_pred cccccCcEEEEEeCCCcccccCCccCCCCCCCCcCHHHHHHHHHHHHHhc----cCCCCEEEECChHHHHHHHHHHHHhc
Confidence 345677999999999999998888776 99999999999999998875 56899999999999999999992
Q ss_pred ----CCCcccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcC-------
Q 006920 500 ----GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ------- 568 (625)
Q Consensus 500 ----g~~v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~------- 568 (625)
+.++.+++.|+|+++|.|+|++.+++.+.+| .|..++..+++|+|||+.++..|+..++.+|.+.
T Consensus 79 ~~~~~~~v~~~~~L~E~~~G~~eg~~~~ei~~~~~----~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~ 154 (275)
T 3dcy_A 79 KFCKDMTVKYDSRLRERKYGVVEGKALSELRAMAK----AAREECPVFTPPGGETLDQVKMRGIDFFEFLCQLILKEADQ 154 (275)
T ss_dssp SSCTTCCEEECGGGSCCCBGGGTTSBHHHHHHHHH----HTTCCTTTCCCTTBCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCeeECcccccCccCCcCCCCHHHHHHHHH----HHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5689999999999999999999999987765 4667778899999999999999999999988651
Q ss_pred ----------------------------------------CCcEEEEechHHHHHHHHHHh---------CCCCCCCCCc
Q 006920 569 ----------------------------------------RAPVVVISHQAVLRALYAYFA---------DRPLKEIPHI 599 (625)
Q Consensus 569 ----------------------------------------~~~VlIVsHg~vir~Ll~~l~---------~~~~~~~~~l 599 (625)
+++|||||||++|++++.+|+ +++.+++..+
T Consensus 155 ~~~~~~~~p~~~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~VlvVsHg~~ir~l~~~l~~~~~~~lp~~l~~~~i~~~ 234 (275)
T 3dcy_A 155 KEQFSQGSPSNCLETSLAEIFPLGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYFLTDLKCSLPATLSRSELMSV 234 (275)
T ss_dssp C---------CHHHHHHHTTSCC-------------CCCCSCEEEEEECHHHHHHHHHHHHHTTCCBCCTTCCHHHHHSC
T ss_pred ccccccccchHHHHHHHHhhccccccccchhcccccccCCCceEEEEechHHHHHHHHHHHhhcCCCCCCCCCHHHhcCc
Confidence 468999999999999999999 6666666556
Q ss_pred ccCCcEE-EEEEEc
Q 006920 600 ETPLHTI-IEIQMG 612 (625)
Q Consensus 600 ~i~~~si-~~l~~~ 612 (625)
.++.+-. +.+++.
T Consensus 235 ~~~tgi~~~~~~~~ 248 (275)
T 3dcy_A 235 TPNTGMSLFIINFE 248 (275)
T ss_dssp CCTTCEEEEEEEEC
T ss_pred CCCCCCeeEEEEEc
Confidence 6655544 455553
No 23
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=99.96 E-value=2.4e-29 Score=258.38 Aligned_cols=188 Identities=20% Similarity=0.214 Sum_probs=157.4
Q ss_pred CCCCccEEEeccccccCC------------CCC------------------CcCC---CCCCCHHHHHHHHHHHHHHHHH
Q 006920 428 HLTPRPILLTRHGESRDN------------VRG------------------RIGG---DTILSDAGEIYAKKLANFVEKR 474 (625)
Q Consensus 428 ~~~~~~I~LVRHGes~~n------------~~~------------------~~~g---D~pLTe~G~~QA~~l~~~L~~~ 474 (625)
.+.+++||||||||+.+| ..+ +++| |.|||+.|++||+.+++.|++.
T Consensus 6 ~~~~~~l~lvRHGet~~n~~~~~w~~~~~n~~~~y~~~d~n~p~~~~~r~~~~~G~~~D~pLt~~G~~QA~~l~~~L~~~ 85 (273)
T 3d4i_A 6 TISRRGILVIRHGERVDQVFGKSWLQQCTTADGKYYRPDLNFPRSLPRRSNGIKDFENDPPLSSCGIFQARLAGEALLDS 85 (273)
T ss_dssp TSCCCEEEEEECCCBHHHHHCTTHHHHTBCTTSCBCCSSTTSCSCCCCCTTGGGGGGGSCCBCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCccccccccchhHHHhhhccccccccccccCCcccccccCCCcCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 456789999999999985 222 2333 9999999999999999999865
Q ss_pred hcCCCCCEEEEcCcHHHHHHHHHh---cC----CCccccccccc-ccCCcCCC----CCHHHHHhhChH---HHHHHhcC
Q 006920 475 LKSERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDE-INAGVCDG----MTYEEIKKNMPE---EYEARKKD 539 (625)
Q Consensus 475 l~~~~~~~I~sSpl~Ra~qTA~~i---~g----~~v~~~~~L~E-i~~G~~eg----~~~~ei~~~~p~---~~~~~~~~ 539 (625)
...++.|||||+.||+|||++| ++ .++.+++.|+| +++|.|+| ++.+++.+.+|+ .+..|..+
T Consensus 86 --~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~~g~~eg~~~~~~~~el~~~~~~~~~~~~~~~~~ 163 (273)
T 3d4i_A 86 --GVRVTAVFASPALRCVQTAKHILEELKLEKKLKIRVEPGIFEWMKWEASKATLTFLTLEELKEANFNVDLDYRPALPR 163 (273)
T ss_dssp --TCCEEEEEECSSHHHHHHHHHHHHHHTCTTTSCEEECGGGSCCGGGSCTTGGGGSCCHHHHHHTTCCBCTTCCCSSCG
T ss_pred --CCCCCEEEECchHHHHHHHHHHHHHcCcCCCccEEEChhhhhhhhccccccCCCCCCHHHHHHhCCCCCcccccccCC
Confidence 5689999999999999999999 44 67889999999 99999998 689999887763 34444332
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHcC----CCcEEEEechHHHHHHHHHHhCCCCCCCCCc-----ccCCcEEEEEE
Q 006920 540 KLRYRYPRGESYLDVIQRLEPVIIELERQ----RAPVVVISHQAVLRALYAYFADRPLKEIPHI-----ETPLHTIIEIQ 610 (625)
Q Consensus 540 ~~~~~~p~gES~~d~~~Rv~~~i~~L~~~----~~~VlIVsHg~vir~Ll~~l~~~~~~~~~~l-----~i~~~si~~l~ 610 (625)
..+|+|||+.++.+|+..++.++..+ +++|||||||++|+++++++++.+....+.+ .+++|++++|+
T Consensus 164 ---~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~~~n~si~~l~ 240 (273)
T 3d4i_A 164 ---CSLMPAESYDQYVERCAVSMGQIINTCPQDMGITLIVSHSSALDSCTRPLLGLPPRECGDFAQLVRKIPSLGMCFCE 240 (273)
T ss_dssp ---GGCCTTCCHHHHHHHHHHHHHHHHTTSTTCCSEEEEEECTTHHHHTTHHHHTCCCCCHHHHHHHHHTCCTTCEEEEE
T ss_pred ---CcCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEechHHHHHHHHHHcCCCcchHHHHhhhccccCcceEEEEE
Confidence 25689999999999999999998753 5789999999999999999999998877766 79999999999
Q ss_pred EcC--CeEEEEE
Q 006920 611 MGV--TGVQEKR 620 (625)
Q Consensus 611 ~~~--~g~~~~r 620 (625)
++. .+|....
T Consensus 241 ~~~~~~~w~l~~ 252 (273)
T 3d4i_A 241 ENREDGKWDLVN 252 (273)
T ss_dssp ECTTTCCEEEEC
T ss_pred EcCCCCceeECC
Confidence 976 5676543
No 24
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=99.96 E-value=1.1e-28 Score=252.19 Aligned_cols=185 Identities=19% Similarity=0.105 Sum_probs=149.9
Q ss_pred CCCccEEEeccccccC----------------------------CCCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhcC
Q 006920 429 LTPRPILLTRHGESRD----------------------------NVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKS 477 (625)
Q Consensus 429 ~~~~~I~LVRHGes~~----------------------------n~~~~~~g---D~pLTe~G~~QA~~l~~~L~~~l~~ 477 (625)
.++++||||||||+.+ |..++++| |.|||+.|++||+.+++.|++. .
T Consensus 2 ~~~~~l~lvRHGet~~n~~~~w~~~~~~~~~y~~~d~n~p~~~pn~~~~~~g~~~D~pLt~~G~~QA~~l~~~L~~~--~ 79 (263)
T 3c7t_A 2 KSRRWVFALRHGERVDLTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPLTRLGWFQAQLVGEGMRMA--G 79 (263)
T ss_dssp --CEEEEEEECCCBHHHHSSSHHHHHEETTEECCCSTTSCSCCCCCTTHHHHHHHSCCBCHHHHHHHHHHHHHHHHT--T
T ss_pred CCceEEEEEeCCccccccchhhHhhhhccCccccccccCCccccccccCcccCCCCCCcCHHHHHHHHHHHHHHHHC--C
Confidence 3578999999999998 33444443 9999999999999999999764 5
Q ss_pred CCCCEEEEcCcHHHHHHHHHh---cC----CCccccccccc-ccCCcC---CCCCHHHHHhhChHHHHHHhcCccCCCCC
Q 006920 478 ERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDE-INAGVC---DGMTYEEIKKNMPEEYEARKKDKLRYRYP 546 (625)
Q Consensus 478 ~~~~~I~sSpl~Ra~qTA~~i---~g----~~v~~~~~L~E-i~~G~~---eg~~~~ei~~~~p~~~~~~~~~~~~~~~p 546 (625)
.+++.|||||+.||+|||++| ++ .++.+++.|+| +++|.| +|++.+++.+.+|.. ..++..... ..|
T Consensus 80 ~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~~g~~~G~eg~~~~e~~~~~~~~-~~~~~~~~~-~~p 157 (263)
T 3c7t_A 80 VSIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFEFKNWHMPKGIDFMTPIELCKAGLNV-DMTYKPYVE-MDA 157 (263)
T ss_dssp CCCCEEEECSSHHHHHHHHHHHHHHTCCTTCCEEECGGGCCCCCTTSCCCCCCCCHHHHHHTTCCB-CTTCCCSCC-CCS
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCcCCCCceEeccccccccccccccccccCCHHHHHHhcCCc-ccccccccc-CCC
Confidence 689999999999999999999 44 77889999999 997544 889999998877641 112222222 237
Q ss_pred CCCCHHHHHHHHHHHHHHHHc----CCCcEEEEechHHHHHHHHHHhCCCCCCCC-------Cc--ccCCcEEEEEEEcC
Q 006920 547 RGESYLDVIQRLEPVIIELER----QRAPVVVISHQAVLRALYAYFADRPLKEIP-------HI--ETPLHTIIEIQMGV 613 (625)
Q Consensus 547 ~gES~~d~~~Rv~~~i~~L~~----~~~~VlIVsHg~vir~Ll~~l~~~~~~~~~-------~l--~i~~~si~~l~~~~ 613 (625)
+|||+.++.+|+..++.++.+ .+++|||||||++|+++++++++.+....+ .+ .+++|++++|+++.
T Consensus 158 ~gEs~~~~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~n~si~~l~~~~ 237 (263)
T 3c7t_A 158 SAETMDEFFKRGEVAMQAAVNDTEKDGGNVIFIGHAITLDQMVGALHRLRDDMEDVQPYEIGRNLLKVPYCALGAMRGKP 237 (263)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTTTTTCCEEEEECHHHHHHHHHHHHTTCSSCCSCCCCCTTSSSSCCCTTCEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCHHHHHHHHHHHhCCCchhhcccHHHHHHhcccCCcceehhecccC
Confidence 999999999999999999865 357899999999999999999999887654 44 89999999999975
Q ss_pred CeEEEE
Q 006920 614 TGVQEK 619 (625)
Q Consensus 614 ~g~~~~ 619 (625)
|...
T Consensus 238 --w~~~ 241 (263)
T 3c7t_A 238 --WDVV 241 (263)
T ss_dssp --TEEE
T ss_pred --ceEC
Confidence 5443
No 25
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=99.94 E-value=9e-28 Score=245.60 Aligned_cols=164 Identities=14% Similarity=0.050 Sum_probs=141.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC----CCcccccccccccCCcCCC-----
Q 006920 452 GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDEINAGVCDG----- 519 (625)
Q Consensus 452 gD~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g----~~v~~~~~L~Ei~~G~~eg----- 519 (625)
.|+|||+.|++||+.+++.|++. ...++.|||||+.||+|||+.+ ++ .++.+++.|.| +|.|+|
T Consensus 54 ~D~pLT~~G~~QA~~l~~~L~~~--~~~~d~v~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E--~g~~eg~~~~~ 129 (264)
T 3mbk_A 54 KDAPITVFGCMQARLVGEALLES--NTVIDHVYCSPSLRCVQTAHNILKGLQQDNHLKIRVEPGLFE--WTKWVAGSTLP 129 (264)
T ss_dssp TSCCBCHHHHHHHHHHHHHHHHT--TCCCCEEEECSSHHHHHHHHHHHHHHTCTTTCCBEECGGGSC--CGGGSSSSSCC
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCcCEEEECcHHHHHHHHHHHHHHhcccCCCCeeEcCChHH--HhhhccccCCC
Confidence 39999999999999999999865 5689999999999999999999 33 37899999999 688988
Q ss_pred --CCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHc----CCCcEEEEechHHHHHHHHHHhCCCC
Q 006920 520 --MTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER----QRAPVVVISHQAVLRALYAYFADRPL 593 (625)
Q Consensus 520 --~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~----~~~~VlIVsHg~vir~Ll~~l~~~~~ 593 (625)
++.+++.+.+|.....|..+.....+|+|||+.++.+|+..++.++.+ .+++|||||||++|+++++++++.+.
T Consensus 130 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~~l~g~~~ 209 (264)
T 3mbk_A 130 AWIPPSELAAANLSVDTTYRPHIPVSKLAISESYDTYINRSFQVTKEIISECKSKGNNILIVAHASSLEACTCQLQGLSP 209 (264)
T ss_dssp CCCCHHHHHHTTCCBCTTCCCSSCGGGCCTTCCHHHHHHHHHHHHHHHHHHHTTSCSEEEEEECTTHHHHTTTGGGTCCC
T ss_pred CCCCHHHHHHhCCCcchhhccccCcccCCCCCCHHHHHHHHHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHHcCCCH
Confidence 589999988887777777776777889999999999999999999965 36799999999999999999999999
Q ss_pred CCCCCcc-----cCCcEEEEEEE--cCCeEEEE
Q 006920 594 KEIPHIE-----TPLHTIIEIQM--GVTGVQEK 619 (625)
Q Consensus 594 ~~~~~l~-----i~~~si~~l~~--~~~g~~~~ 619 (625)
+.++.+. +|++++..++. ..+.|...
T Consensus 210 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~W~l~ 242 (264)
T 3mbk_A 210 QNSKDFVQMVRKIPYLGFCSCEELGETGIWQLT 242 (264)
T ss_dssp CCHHHHHHHHTTCCTTCEEEEEECSSSCCEEEE
T ss_pred HHHHHHHHhccCCCchHHHHhhhhccCCcEEeC
Confidence 8877654 88888888875 35566653
No 26
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=99.94 E-value=1.3e-26 Score=227.60 Aligned_cols=173 Identities=21% Similarity=0.222 Sum_probs=139.1
Q ss_pred cCCCCccEEEeccccccCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---c-CCC
Q 006920 427 THLTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFP 502 (625)
Q Consensus 427 ~~~~~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~-g~~ 502 (625)
..+.+++|||||||++ |..+++..|.|||+.|++||+.+++.|+.. ..+++.|||||+.||+|||+++ + +.+
T Consensus 6 ~~~~~~~i~lvRHGe~--n~~g~~~~D~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~ 81 (202)
T 3mxo_A 6 KAKATRHIFLIRHSQY--HVDGSLEKDRTLTPLGREQAELTGLRLASL--GLKFNKIVHSSMTRAIETTDIISRHLPGVC 81 (202)
T ss_dssp CCSSCEEEEEEECCCB--CTTCSSGGGCCBCHHHHHHHHHHHHHHHTT--CCCCSEEEEESSHHHHHHHHHHHHTSTTCC
T ss_pred CCCCceEEEEEeCccc--cCCCCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhCCCCC
Confidence 3456799999999994 666666669999999999999999998753 3689999999999999999999 3 678
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcC-------CCcEEEE
Q 006920 503 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-------RAPVVVI 575 (625)
Q Consensus 503 v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~-------~~~VlIV 575 (625)
+.+++.|+| |+++++ .++ +..|. +++|++.++.+|+..++.++.+. +++||||
T Consensus 82 ~~~~~~L~E-------g~~~~~---~~~--~~~w~--------~~~es~~~~~~R~~~~~~~~~~~~~~~~~~~~~vlvV 141 (202)
T 3mxo_A 82 KVSTDLLRE-------GAPIEP---DPP--VSHWK--------PEAVQYYEDGARIEAAFRNYIHRADARQEEDSYEIFI 141 (202)
T ss_dssp EEEEGGGCC-------CCC---------------------------CTHHHHHHHHHHHHHHHTTCCCTTCCSCEEEEEE
T ss_pred eeeCccccc-------CCccCC---CCc--HHhhc--------cCCcccccHHHHHHHHHHHHHHhhhhccCCCceEEEE
Confidence 899999999 334332 111 33343 57899999999999999999763 4579999
Q ss_pred echHHHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcC-CeEEEEEEEc
Q 006920 576 SHQAVLRALYAYFADRPLKEIPHIETPLHTIIEIQMGV-TGVQEKRYKL 623 (625)
Q Consensus 576 sHg~vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~-~g~~~~r~~l 623 (625)
|||++|++++++++|.+...++.+.++||++++|++.. +.|....+|-
T Consensus 142 sHg~~ir~ll~~llg~~~~~~~~~~~~n~si~~l~~~~~g~~~l~~~N~ 190 (202)
T 3mxo_A 142 CHANVIRYIVCRALQFPPEGWLRLSLNNGSITHLVIRPNGRVALRTLGD 190 (202)
T ss_dssp ECHHHHHHHHHHHTTCCGGGGGGBCCCTTCEEEEEECTTSCEEEEEEEE
T ss_pred eCHHHHHHHHHHHhCCCHHHHhhcccCCceEEEEEEcCCCcEEEEEeCC
Confidence 99999999999999999999999999999999999975 5688887764
No 27
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural genomics, isomerase, structural GE consortium, SGC; 2.40A {Plasmodium falciparum}
Probab=99.94 E-value=3.5e-27 Score=234.30 Aligned_cols=173 Identities=18% Similarity=0.161 Sum_probs=119.5
Q ss_pred CCCccEEEeccccccCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---c-CCCcc
Q 006920 429 LTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFPKI 504 (625)
Q Consensus 429 ~~~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~-g~~v~ 504 (625)
+.+++|||||||++.+|..+ -..|.|||+.|++||+.+++.|+..+...+++.|||||+.||+|||+.+ + +.++.
T Consensus 19 ~~~~~i~LvRHGet~~n~~~-g~~d~pLt~~G~~QA~~l~~~L~~~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 97 (214)
T 3eoz_A 19 NTTKHIILVRHGQYERRYKD-DENSKRLTKEGCKQADITGKKLKDILNNKKVSVIYHSDMIRAKETANIISKYFPDANLI 97 (214)
T ss_dssp CCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSHHHHHHHHHHHTTCTTSEEE
T ss_pred CCccEEEEEeCCccccCccC-CcCCCCcCHHHHHHHHHHHHHHHHhcccCCCCEEEECCcHHHHHHHHHHHHHCCCCCee
Confidence 45689999999999999764 1229999999999999999999877656689999999999999999999 3 56788
Q ss_pred cccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcC-----CCcEEEEechH
Q 006920 505 QWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-----RAPVVVISHQA 579 (625)
Q Consensus 505 ~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~-----~~~VlIVsHg~ 579 (625)
+++.|+| |+++.+ +.. .....|+|||+.++.+|+..++.++..+ +++|||||||+
T Consensus 98 ~~~~L~E-------G~~~~~------~~~-------~~~~~~~gEs~~~~~~R~~~~l~~l~~~~~~~~~~~vlvVsHg~ 157 (214)
T 3eoz_A 98 NDPNLNE-------GTPYLP------DPL-------PRHSKFDAQKIKEDNKRINKAYETYFYKPSGDEDEYQLVICHGN 157 (214)
T ss_dssp ECGGGCC-------CC-----------------------------------CCHHHHHHHHCSCCCSSCCEEEEEEECHH
T ss_pred eCccccC-------CCCCCC------CCC-------cccCCCCCccHHHHHHHHHHHHHHHHHhcccCCCcEEEEEeCcH
Confidence 9999999 344331 100 1122478999999999999999999654 24799999999
Q ss_pred HHHHHHHHHhCCCCCCCCCcccCCcEEEEEEEcCC-eEEEEEEE
Q 006920 580 VLRALYAYFADRPLKEIPHIETPLHTIIEIQMGVT-GVQEKRYK 622 (625)
Q Consensus 580 vir~Ll~~l~~~~~~~~~~l~i~~~si~~l~~~~~-g~~~~r~~ 622 (625)
+|+++++++++.+...++.+.++||++++|++.+. .|....+|
T Consensus 158 ~i~~ll~~llg~~~~~~~~~~~~n~si~~l~~~~~g~~~l~~~N 201 (214)
T 3eoz_A 158 VIRYFLCRALQIPLFAWLRFSSYNCGITWLVLDDEGSVVLREFG 201 (214)
T ss_dssp HHHHHHHHHHTCCHHHHHHHTTCCCSEEEEEEETTSCEEEECCG
T ss_pred HHHHHHHHHhCCCHHHHhhcCCCCceEEEEEECCCCCEEEEEec
Confidence 99999999999998887788999999999999864 57776654
No 28
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=99.90 E-value=8.7e-23 Score=193.69 Aligned_cols=145 Identities=17% Similarity=0.167 Sum_probs=116.5
Q ss_pred ccEEEeccccccCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCcccccc
Q 006920 432 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWRA 508 (625)
Q Consensus 432 ~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~v~~~~~ 508 (625)
|+|||||||++.+|..+ ..|.|||+.|++||+.++++|.+. ...++.|||||+.||+|||+++ ++.++...
T Consensus 1 m~l~LvRHg~t~~n~~g--~~d~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~-- 74 (161)
T 1ujc_A 1 MQVFIMRHGDAALDAAS--DSVRPLTTNGCDESRLMANWLKGQ--KVEIERVLVSPFLRAEQTLEEVGDCLNLPSSAE-- 74 (161)
T ss_dssp CEEEEEECCCBCSCSSS--GGGCCBCHHHHHHHHHHHHHHHHT--TCCCCEEEECSSHHHHHHHHHHHHHSCCCSCCE--
T ss_pred CEEEEEeCCCcCCCCCC--CCcCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEeCchHHHHHHHHHHHHhcCCCceEE--
Confidence 47999999999999743 129999999999999999999864 4689999999999999999999 34433211
Q ss_pred cccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHc-CCCcEEEEechHHHHHHHHH
Q 006920 509 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER-QRAPVVVISHQAVLRALYAY 587 (625)
Q Consensus 509 L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~-~~~~VlIVsHg~vir~Ll~~ 587 (625)
.|++ -+|+|| + .|+..++.++.+ .+++|+|||||++|+.++++
T Consensus 75 -------~~~~------------------------l~p~ge-~----~r~~~~l~~~~~~~~~~vlvV~H~~~i~~l~~~ 118 (161)
T 1ujc_A 75 -------VLPE------------------------LTPCGD-V----GLVSAYLQALTNEGVASVLVISHLPLVGYLVAE 118 (161)
T ss_dssp -------ECGG------------------------GSTTCC-H----HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHH
T ss_pred -------ecCC------------------------cCCCCC-H----HHHHHHHHHHhccCCCeEEEEeCHHHHHHHHHH
Confidence 1111 136787 3 577777777764 57799999999999999999
Q ss_pred HhCCCCCCCCCcccCCcEEEEEEEc-CCeEEEEEEE
Q 006920 588 FADRPLKEIPHIETPLHTIIEIQMG-VTGVQEKRYK 622 (625)
Q Consensus 588 l~~~~~~~~~~l~i~~~si~~l~~~-~~g~~~~r~~ 622 (625)
+++.+.. +.+++++++.|+++ ..+|....++
T Consensus 119 l~~~~~~----~~~~~~~i~~l~~~~~~~~~l~~~~ 150 (161)
T 1ujc_A 119 LCPGETP----PMFTTSAIASVTLDESGNGTFNWQM 150 (161)
T ss_dssp HSTTCCC----CCCCTTCEEEEEECTTSCEEEEEEE
T ss_pred HhCCCCc----cccCCCeEEEEEEcCCCCeEEEEee
Confidence 9998765 67899999999998 7788877765
No 29
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=2.9e-22 Score=192.34 Aligned_cols=137 Identities=20% Similarity=0.225 Sum_probs=103.5
Q ss_pred CccEEEeccccccCCCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCC--c
Q 006920 431 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFP--K 503 (625)
Q Consensus 431 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~--v 503 (625)
|++|||||||++.+|..+ .+ |.|||+.|++||+.++++|.+. ...++.|||||+.||+|||+++ ++.+ +
T Consensus 8 M~~l~LvRHg~t~~n~~~--~g~~d~pLt~~G~~qa~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 83 (173)
T 2rfl_A 8 PTRVYLLRHAKAAWAAPG--ERDFDRGLNEAGFAEAEIIADLAADR--RYRPDLILSSTAARCRQTTQAWQRAFNEGIDI 83 (173)
T ss_dssp CCEEEEEECCCBCC-------CGGGCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEECSSHHHHHHHHHHHHHHC--CEE
T ss_pred ccEEEEEeCCCcCCCCCC--CCcccCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCHHHHHHHHHHHHHhcCCCCCe
Confidence 579999999999999754 34 9999999999999999999865 5689999999999999999999 4554 4
Q ss_pred ccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEechHHHHH
Q 006920 504 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRA 583 (625)
Q Consensus 504 ~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~~~~VlIVsHg~vir~ 583 (625)
..++.|.|.+. |++.+ ++ ++...+++|+|||||++|+.
T Consensus 84 ~~~~~l~e~~~----------------------------------e~~~~-------~l-~~~~~~~~vlvVsH~~~i~~ 121 (173)
T 2rfl_A 84 VYIDEMYNARS----------------------------------ETYLS-------LI-AAQTEVQSVMLVGHNPTMEA 121 (173)
T ss_dssp EECGGGSSCSS----------------------------------SCSHH-------HH-HTCTTCSEEEEEECTTHHHH
T ss_pred EECHhHhcCCH----------------------------------HHHHH-------HH-hCCCCCCeEEEEeCCHHHHH
Confidence 55566555321 44443 33 44445779999999999999
Q ss_pred HHHHHhCCCCCC-CCCcccCCcEEEEEEEcC
Q 006920 584 LYAYFADRPLKE-IPHIETPLHTIIEIQMGV 613 (625)
Q Consensus 584 Ll~~l~~~~~~~-~~~l~i~~~si~~l~~~~ 613 (625)
+++++++.+... .+.+.++++++++|+++.
T Consensus 122 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (173)
T 2rfl_A 122 TLEAMIGEDLLHAALPSGFPTSGLAVLDQDD 152 (173)
T ss_dssp HHHHHHCHHHHHHHCTTCCCTTCEEEEEC--
T ss_pred HHHHHhCCCcchhhhhcCCCCCeEEEEEecC
Confidence 999999976432 234689999999998864
No 30
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.78 E-value=9.7e-19 Score=186.98 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=122.5
Q ss_pred cCCCCccEEEeccccccCCCCCCcC-CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCC
Q 006920 427 THLTPRPILLTRHGESRDNVRGRIG-GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFP 502 (625)
Q Consensus 427 ~~~~~~~I~LVRHGes~~n~~~~~~-gD~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i---~g~~ 502 (625)
-...+++|||||||++.++...... .|.|||+.|++||+.+++.|+ ...++.|||||+.||+|||+++ ++.+
T Consensus 178 g~~~~~~l~lvRHg~~~~~~~~~~~~~d~pLt~~G~~qa~~~~~~l~----~~~~d~i~sSp~~Ra~~Ta~~~~~~~~~~ 253 (364)
T 3fjy_A 178 GAATAQNLLIVRHAKAESRKSWKGTDANRPITPKGAAMAFALNRELA----CFNPTRLATSPWLRCQETLQVLSWQTERP 253 (364)
T ss_dssp TGGGCEEEEEEECCCBCCTTTCCSCSTTCCBCHHHHHHHHHHHHHHG----GGCEEEEEECSSHHHHHHHHHHHHHHTCC
T ss_pred CCCcceeEEEEeccccccccccCCCcCcCCCCHHHHHHHHHHHHHhc----cCCCCEEEEcChHHHHHHHHHHHHhcCCC
Confidence 3456789999999999976542111 289999999999999999887 3489999999999999999999 6778
Q ss_pred cccccccccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEechHHHH
Q 006920 503 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLR 582 (625)
Q Consensus 503 v~~~~~L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~~~~VlIVsHg~vir 582 (625)
+...+.|+|..++ ++..++..|+.+++.++...+++|||||||++|+
T Consensus 254 ~~~~~~l~e~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~vlvV~H~~~i~ 300 (364)
T 3fjy_A 254 MEHINTLTEDAFA---------------------------------EHPAVSWLAFREQITQTLNSRETTAICMHRPVIG 300 (364)
T ss_dssp EEECGGGSHHHHH---------------------------------HCHHHHHHHHHHHHHHHHHHTCEEEEEECHHHHH
T ss_pred eEECcccCccccc---------------------------------cCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHH
Confidence 8888888886432 2445667778888888777788999999999999
Q ss_pred HHHHHHhCCCCCC-CC---C---cccCCcEEEEEEE--cCCeEEEEEEE
Q 006920 583 ALYAYFADRPLKE-IP---H---IETPLHTIIEIQM--GVTGVQEKRYK 622 (625)
Q Consensus 583 ~Ll~~l~~~~~~~-~~---~---l~i~~~si~~l~~--~~~g~~~~r~~ 622 (625)
.|+.++.+.+... +. . ..+|++++..+++ +..|+....++
T Consensus 301 ~l~~~l~g~~~~~~~~~~~~~~~~~~pt~~~~v~~~~~~~~~~~v~~~~ 349 (364)
T 3fjy_A 301 GMYDHLRGLCARKQLAKQLIAKSPYMPTGTAMSLFIIDTPQGPSIIDIQ 349 (364)
T ss_dssp HHHHHHGGGSSSHHHHHHCCSSTTTSCTTCEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHhCCCchHHHHHhccccCcccCCCcEEEEEEcCCCCCCeEEEEE
Confidence 9999999977321 11 1 1266666655555 56787776665
No 31
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=99.76 E-value=3.7e-18 Score=163.93 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=102.3
Q ss_pred ccEEEeccccccCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCCCccccccccc
Q 006920 432 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRALDE 511 (625)
Q Consensus 432 ~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i~g~~v~~~~~L~E 511 (625)
|+|||||||++.+|.......|.|||+.|++||+.++++|.+. ...++.|||||+.||+|||+.+...... ..+.+
T Consensus 1 M~l~LvRHg~a~~~~~~~~d~d~pLt~~G~~qA~~~~~~L~~~--~~~~~~i~sSp~~Ra~qTa~~l~~~~~~--~~~~~ 76 (172)
T 3f2i_A 1 MELYLIRHGIAEAQKTGIKDEERELTQEGKQKTEKVAYRLVKL--GRQFDLIVTSPLIRARQTAEILLASGLS--CQLEE 76 (172)
T ss_dssp CEEEEEECCCBCCC---CCGGGCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHTTSC--SCEEE
T ss_pred CEEEEEcCCCcCccccCCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHhcCCC--CCeEE
Confidence 5899999999999865432239999999999999999999875 5689999999999999999999322110 11111
Q ss_pred ccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEechHHHHHHHHHHhCC
Q 006920 512 INAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADR 591 (625)
Q Consensus 512 i~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~~~~VlIVsHg~vir~Ll~~l~~~ 591 (625)
.+. ...++...++.+++..+. .....++|+||||+.++..|++++.+.
T Consensus 77 ~~~------------------------------L~~~~~~~~~~~~l~~~~--~~~~~~~vllVgH~P~l~~l~~~L~~~ 124 (172)
T 3f2i_A 77 SNH------------------------------LAPNGNIFNWLDYWLKPK--NFPENAQIAIVGHEPCLSNWTEILLWG 124 (172)
T ss_dssp CGG------------------------------GSTTCCHHHHHHHTHHHH--CCCTTCEEEEEECTTHHHHHHHHHHHS
T ss_pred Ccc------------------------------cCCccCHHHHHHHHHHhc--cCCCCCEEEEEeCChHHHHHHHHHhcC
Confidence 110 001234444444433322 114567999999999999999999986
Q ss_pred CCCCCCCcccCCcEEEEEEEcC
Q 006920 592 PLKEIPHIETPLHTIIEIQMGV 613 (625)
Q Consensus 592 ~~~~~~~l~i~~~si~~l~~~~ 613 (625)
+.. ..+.++.++++.|+++.
T Consensus 125 ~~~--~~~~~~t~~i~~l~~~~ 144 (172)
T 3f2i_A 125 EAK--DSLVLKKAGMIGLKLPE 144 (172)
T ss_dssp SCC--CCBCCCTTCEEEEECCS
T ss_pred Ccc--cccccCCceEEEEEeCC
Confidence 553 34689999999999864
No 32
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=99.69 E-value=9e-17 Score=156.14 Aligned_cols=137 Identities=16% Similarity=0.115 Sum_probs=99.5
Q ss_pred CCccEEEeccccccCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh-cCCCcccccc
Q 006920 430 TPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI-AGFPKIQWRA 508 (625)
Q Consensus 430 ~~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~QA~~l~~~L~~~l~~~~~~~I~sSpl~Ra~qTA~~i-~g~~v~~~~~ 508 (625)
.+++|||||||++.|+..+. |.|||++|++||+.++++|++. ...++.|||||+.||+|||+.+ ...++...+.
T Consensus 18 ~~k~L~L~RHaka~~~~~D~---dRpLt~~G~~~a~~~~~~l~~~--~~~~d~i~~Spa~Ra~qTa~~~~~~~~~~~~~~ 92 (186)
T 4hbz_A 18 GARTLVLMRHAAAGSAVRDH---DRPLTPDGVRAATAAGQWLRGH--LPAVDVVVCSTAARTRQTLAATGISAQVRYRDE 92 (186)
T ss_dssp CCEEEEEEECCCBCCCSSGG---GCCBCHHHHHHHHHHHHHHHHH--SCCCCEEEEESSHHHHHHHHHHTCCSEEEEEGG
T ss_pred CCcEEEEEECCccCCCCCCC---CCCCCHHHHHHHHHhhhHhhhc--ccCCCccccCcchhHHHHHHhhccccccccccc
Confidence 46899999999999864322 8999999999999999999987 7789999999999999999988 2223332222
Q ss_pred cccccCCcCCCCCHHHHHhhChHHHHHHhcCccCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEechHHHHHHHHHH
Q 006920 509 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYF 588 (625)
Q Consensus 509 L~Ei~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~Rv~~~i~~L~~~~~~VlIVsHg~vir~Ll~~l 588 (625)
|.+. +. ..+..+|.++....++|+||+|...+..+..++
T Consensus 93 ly~~-------------------------------------~~----~~~l~~i~~~~~~~~~vllvGHnP~l~~l~~~L 131 (186)
T 4hbz_A 93 LYGG-------------------------------------GV----DEILAEVAAVPADASTVLVVGHAPTIPATGWEL 131 (186)
T ss_dssp GTTC-------------------------------------CH----HHHHHHHHTSCTTCSEEEEEECTTHHHHHHHHH
T ss_pred cccc-------------------------------------Ch----HHHHHHHHhccCCCCeeeecccCCCHHHHHHHH
Confidence 2111 11 112233444445567899999999999999988
Q ss_pred hCCCC--------CC--CCCcccCCcEEEEEEEc
Q 006920 589 ADRPL--------KE--IPHIETPLHTIIEIQMG 612 (625)
Q Consensus 589 ~~~~~--------~~--~~~l~i~~~si~~l~~~ 612 (625)
.+... .. .....+|.+++.+|++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~fpTa~~avl~~~ 165 (186)
T 4hbz_A 132 VRQSLLNRDADPSSGAGDELRHFAAGTFAVLSTT 165 (186)
T ss_dssp HHHHHHHTTCCTTCCTTGGGGCCCTTCEEEEEES
T ss_pred hccccccccchhhhhhHhhhcCCCCeEEEEEECC
Confidence 75311 11 11236899999999885
No 33
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.48 E-value=2e-13 Score=129.36 Aligned_cols=120 Identities=17% Similarity=0.173 Sum_probs=84.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHH-HHcccCCcceEEechHHHHHHcCCCCC--CcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTR-YLRWLGHDTKHFNVGKYRRLKHGVNQS--ADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~-~L~~~g~~~~~~~~D~~Rk~~~g~~~~--~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
|.+|+|+|+|||||||+|+.|++ .+++. +++.|.+|+.+.+.... ..+ ....... ....+.+.+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~-----~i~~d~~r~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~ 69 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY-----NINRDDYRQSIMAHEERDEYKY----TKKKEGI---VTGMQFDTAK 69 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEE-----EECHHHHHHHHTTSCCGGGCCC----CHHHHHH---HHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcE-----EecHHHHHHHhhCCCccchhhh----chhhhhH---HHHHHHHHHH
Confidence 57899999999999999999999 57776 89999999877653211 112 1111111 1112222233
Q ss_pred HHHH--cCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhh
Q 006920 300 SWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 300 ~~l~--~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr 354 (625)
..+. ..|..+|+|+++.....|+.+.++ ...++++.+|++.|+.+++++|+..|.
T Consensus 70 ~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~ 127 (181)
T 1ly1_A 70 SILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (181)
T ss_dssp HHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCG
T ss_pred HHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccc
Confidence 4442 456777999999999999999887 566778778888999988888876653
No 34
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.48 E-value=1.2e-12 Score=125.48 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=95.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHH-HHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-EVAALAMEDMI 299 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~-~va~~~l~~~~ 299 (625)
++|.+|+++|+|||||||+|+.|++++++. +++.|.+|+.+.+.. . .......+... ..+..+.+.+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~-----~i~~D~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~ 71 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLP-----LLSKDAFKEVMFDGL-----G-WSDREWSRRVGATAIMMLYHTAA 71 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHHH-----C-CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCe-----EecHHHHHHHHHHhc-----C-ccchHHHHHhhHHHHHHHHHHHH
Confidence 467899999999999999999999999888 899999987654321 0 11122222222 22333333333
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhhhc-cCCCCCCCCCHHHHHHHHHH-
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQ-QSPDYAEEPDFEAGLQDFKN- 376 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr~~-~~pd~sd~~d~e~~~~~~~~- 376 (625)
..+..+ ..||+|.++.....+..+.++ ...+.+.++|++.|+.+++++|...|... .+|... ....+..
T Consensus 72 ~~l~~g-~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~-------~~~~~~~~ 143 (193)
T 2rhm_A 72 TILQSG-QSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGH-------CDDRSPAD 143 (193)
T ss_dssp HHHHTT-CCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC---------------CHHH
T ss_pred HHHhCC-CeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCccc-------ccCccCcc
Confidence 445544 455999998433344455556 44566778888899998888887766432 233111 0011221
Q ss_pred -HHHhhhhccccCCCCCeeEEeec
Q 006920 377 -RLANYEKVYEPVDEGSYIKMIDM 399 (625)
Q Consensus 377 -rl~~y~~~fEp~~e~~~i~~id~ 399 (625)
.+......|+|+........||+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~Idt 167 (193)
T 2rhm_A 144 LELVRSRGDIPPLPLGGPLLTVDT 167 (193)
T ss_dssp HHHHHHSCCCCCCCCCSCEEEEEC
T ss_pred hhhHHHHhcCCCccCCCCEEEEeC
Confidence 12222334777765455677887
No 35
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.41 E-value=1e-12 Score=142.74 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=99.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
.+.|.+|+|+|+|||||||+|+.|++.+++. +++.|.++ .+.. +...+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~-----~i~~D~~~-------------------~~~~-------~~~~~~ 303 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYV-----HVNRDTLG-------------------SWQR-------CVSSCQ 303 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCE-----ECCGGGSC-------------------SHHH-------HHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcE-----EEccchHH-------------------HHHH-------HHHHHH
Confidence 5678999999999999999999999999888 88888651 0111 222222
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHH
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 378 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl 378 (625)
..+. .|..||+|+++.....|..++++ .+.++.+.+|++.|+.+++++|+..|....... .+ .+++ .+
T Consensus 304 ~~l~-~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~-~~--~~~~-------~~ 372 (416)
T 3zvl_A 304 AALR-QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSH-AP--VSDM-------VM 372 (416)
T ss_dssp HHHH-TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTC-CC--CCHH-------HH
T ss_pred HHHh-cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCc-CC--CCHH-------HH
Confidence 3333 45666999999999999999998 677888888999999999999988776432111 11 2333 44
Q ss_pred HhhhhccccCCCC---CeeEEeec
Q 006920 379 ANYEKVYEPVDEG---SYIKMIDM 399 (625)
Q Consensus 379 ~~y~~~fEp~~e~---~~i~~id~ 399 (625)
..+.+.||+++.. .+++.+++
T Consensus 373 ~~~~~~~e~P~~~E~fd~v~~v~~ 396 (416)
T 3zvl_A 373 FSYRKQFEPPTLAEGFLEILEIPF 396 (416)
T ss_dssp HHHHHHCCCCCGGGTCSEEEEECC
T ss_pred HHHHHhcCCCCcccCCcEEEEEec
Confidence 5566667877643 56777776
No 36
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.41 E-value=2.9e-12 Score=130.25 Aligned_cols=117 Identities=21% Similarity=0.157 Sum_probs=84.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 301 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~ 301 (625)
++.+|+|+|+|||||||+|+.|++.|...|....+++.|.+|+.+.+ | ...++..++. ... ..+...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~------~-~~~~e~~~~~---~~~---~~i~~~ 69 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV------W-KEKYEEFIKK---STY---RLIDSA 69 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS------C-CGGGHHHHHH---HHH---HHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh------h-hHHHHHHHHH---HHH---HHHHHH
Confidence 46799999999999999999999997666666666799999865543 2 2212222111 111 112223
Q ss_pred HHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 302 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 302 l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
+. . ..+|+|+++.....|+.+.++ ...+.+.++|++.|+.+.+++|+..|
T Consensus 70 l~-~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R 120 (260)
T 3a4m_A 70 LK-N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER 120 (260)
T ss_dssp HT-T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHT
T ss_pred hh-C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhC
Confidence 33 3 677999999999999999888 66777888888899999999988664
No 37
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.37 E-value=9.5e-12 Score=128.33 Aligned_cols=119 Identities=16% Similarity=0.177 Sum_probs=85.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH-cccCCcceEEechHHHHHHcCCCCCC--cccCCCCHHHHHHHHHHH-HHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYL-RWLGHDTKHFNVGKYRRLKHGVNQSA--DFFRADNPEGMEARNEVA-ALAMEDM 298 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L-~~~g~~~~~~~~D~~Rk~~~g~~~~~--~f~~~~~~~~~~~~~~va-~~~l~~~ 298 (625)
|.+|+++|+|||||||+|+.|++.+ ++. +++.|.+|+.+.+..... .+. ... +... ..+.+.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~-----~i~~D~~r~~~~~~~~g~~~~~~----~~~----~~~~~~~~~~~~ 68 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY-----NINRDDYRQSIMAHEERDEYKYT----KKK----EGIVTGMQFDTA 68 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEE-----EECHHHHHHHHTTSCCCC---CC----HHH----HHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcE-----EecccHHHHHhccCCcccccccc----hhh----hhHHHHHHHHHH
Confidence 4789999999999999999999974 676 999999998776532211 111 111 1111 1122223
Q ss_pred HHHHH--cCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhh
Q 006920 299 ISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 299 ~~~l~--~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr 354 (625)
...+. ..|..+|+|+++.....|+.+.++ .+.++++.+|++.|+.+++++|+..|.
T Consensus 69 ~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 69 KSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp HHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred HHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence 34442 456777999999999999999888 667888888888999989988887764
No 38
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.32 E-value=9.8e-12 Score=140.21 Aligned_cols=144 Identities=14% Similarity=0.143 Sum_probs=104.2
Q ss_pred ccCCCCcccchhHHHHHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccC-CcceEEechHHHHHHcCCCCCC
Q 006920 195 TKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKYRRLKHGVNQSA 273 (625)
Q Consensus 195 ~~~~~p~~~~~~~~~~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g-~~~~~~~~D~~Rk~~~g~~~~~ 273 (625)
.....|.|+......+..+.+..++.+++++|+++|+|||||||+|+.|++.|++.| ..+.+++.|.+|+.+. ...
T Consensus 368 ~g~~~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~---~~~ 444 (573)
T 1m8p_A 368 SGAHIPEWFSYPEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELS---SEL 444 (573)
T ss_dssp HTCCCCTTTSCHHHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTC---TTC
T ss_pred ccCCCCcccccccccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhc---ccc
Confidence 344566777755666777777655678899999999999999999999999999877 7788999999987542 333
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHH
Q 006920 274 DFFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERN 350 (625)
Q Consensus 274 ~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~ 350 (625)
.|...++.+.++....++.. +...|.+||+|..++.+..|+.++++ .+.+ .++.|++.|+.+++.+|+
T Consensus 445 ~f~~~er~~~i~ri~~v~~~--------~~~~g~~VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~~ev~~~R~ 513 (573)
T 1m8p_A 445 GFTREDRHTNIQRIAFVATE--------LTRAGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSD 513 (573)
T ss_dssp CCSHHHHHHHHHHHHHHHHH--------HHHTTCEEEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCCHHHHHHHC
T ss_pred CCChhHHHHHHHHHHHHHHH--------HHhCCCEEEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCCHHHHHHHh
Confidence 34332223333333333333 23367788999999999999999998 4434 566777789998888773
No 39
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.32 E-value=1.2e-11 Score=118.51 Aligned_cols=120 Identities=20% Similarity=0.262 Sum_probs=84.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
..++.+|+++|+|||||||+++.|++.++..|.++.+++.|.+|..+.+ ...|.... +...+..+.. ..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~---~~~~~~~~-------r~~~~~~~~~-~~ 78 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSE---GAGFTREE-------RLRHLKRIAW-IA 78 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTT---TCCCCHHH-------HHHHHHHHHH-HH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhh---ccCCChhh-------HHHHHHHHHH-HH
Confidence 4567899999999999999999999999987888889999988764432 11221111 1111111111 11
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHH
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERN 350 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~ 350 (625)
..+...|.+||+|+++.....|+.++++ ...+.+.++|++.|+.+++.+|.
T Consensus 79 ~~~~~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~ 130 (186)
T 2yvu_A 79 RLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRD 130 (186)
T ss_dssp HHHHTTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHC
T ss_pred HHHHhCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhh
Confidence 2233467788999999888889988887 55566777778899998888875
No 40
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.28 E-value=2.9e-11 Score=124.94 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=101.4
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHH--cccCCcceEEechHHHHHHcCCCC-CCcccCCCCHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYL--RWLGHDTKHFNVGKYRRLKHGVNQ-SADFFRADNPEGMEARNEVAALAME 296 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L--~~~g~~~~~~~~D~~Rk~~~g~~~-~~~f~~~~~~~~~~~~~~va~~~l~ 296 (625)
...|.+|+|+|.|||||||+|+.|++.+ ++. +++.|.+|....+... ...+ ...... .....+..+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~-----~Is~D~~R~~~~~~~~~~~~~-~~~a~~---~~~~~~~~~~~ 100 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVI-----VIDNDTFKQQHPNFDELVKLY-EKDVVK---HVTPYSNRMTE 100 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCE-----EECTHHHHTTSTTHHHHHHHH-GGGCHH---HHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeE-----EEechHhHHhchhhHHHHHHc-cchhhh---hhhHHHHHHHH
Confidence 5568999999999999999999999988 455 8999999864322100 0001 010101 11222222222
Q ss_pred HHH-HHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHH----HHHHHHhhhccCCCCCCCCCHHHH
Q 006920 297 DMI-SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDI----IERNIRLKIQQSPDYAEEPDFEAG 370 (625)
Q Consensus 297 ~~~-~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i----~~R~i~rr~~~~pd~sd~~d~e~~ 370 (625)
... ..+. .|..||+|+++.....+..+++. .+.|+.+.++.+.|+.+.+ .+|...|... ....... .+++.
T Consensus 101 ~~v~~~l~-~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~-g~l~~R~-~~~e~ 177 (287)
T 1gvn_B 101 AIISRLSD-QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYAD-DPMTARA-TPKQA 177 (287)
T ss_dssp HHHHHHHH-HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHH-CTTTCCC-CCHHH
T ss_pred HHHHHHHh-cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHh-CCCCCCC-CCHHH
Confidence 222 2333 35556999999998878777777 6778887778889998887 5555444332 2212233 44455
Q ss_pred HHHHHHHHHhhhhccccCCCCCeeEEeeccCCCCccceecc
Q 006920 371 LQDFKNRLANYEKVYEPVDEGSYIKMIDMVSGHGGQIQVNN 411 (625)
Q Consensus 371 ~~~~~~rl~~y~~~fEp~~e~~~i~~id~~~~~g~~~~~~~ 411 (625)
.+...+|+..-....+....-.++++.|- .+.+.+++
T Consensus 178 ~~~i~~rl~~a~~el~~~~~~d~v~v~d~----~g~~ly~~ 214 (287)
T 1gvn_B 178 HDIVVKNLPTNLETLHKTGLFSDIRLYNR----EGVKLYSS 214 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCEEEECT----TCCEEEET
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEEEEeC----CCCEeecc
Confidence 55555555433222221122256666665 44444444
No 41
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.26 E-value=4e-11 Score=113.63 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=74.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCC--C--cccC---CCCHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--A--DFFR---ADNPEGMEARNEVAALAM 295 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~--~--~f~~---~~~~~~~~~~~~va~~~l 295 (625)
+.+|+++|+|||||||+|+.|++.|+.. ...++.|.+++.+.+.... . .+.. ......++. +...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 76 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEP---WLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRA---LEGAWA 76 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSC---EEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHH---HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCC---eEEeccchHhhhcchhhccchhhccccCCCccccchhHHH---HHHHHH
Confidence 5689999999999999999999998754 2245789888755442110 0 1111 111222222 222222
Q ss_pred HHHHHHHHcCCcEEEEecCCC-cHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 296 EDMISWMHEGGQVGIFDATNS-SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 296 ~~~~~~l~~~g~vvIvDatn~-~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
..+...+ ..|..||+|+++. ....|+.+++... +..++++++.|+.+++.+|...|
T Consensus 77 ~~~~~~~-~~g~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~~~~e~l~~R~~~r 133 (178)
T 1qhx_A 77 EGVVAMA-RAGARIIIDDVFLGGAAAQERWRSFVG-DLDVLWVGVRCDGAVAEGRETAR 133 (178)
T ss_dssp HHHHHHH-HTTCEEEEEECCTTTHHHHHHHHHHHT-TCCEEEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHH-hcCCeEEEEeccccChHHHHHHHHHhc-CCcEEEEEEECCHHHHHHHHHhh
Confidence 2222223 3566679999886 4555677776632 33456666788988888887654
No 42
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.24 E-value=2.8e-11 Score=135.78 Aligned_cols=145 Identities=19% Similarity=0.151 Sum_probs=102.2
Q ss_pred cccCCCCcccchhHHHHHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCC
Q 006920 194 ETKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA 273 (625)
Q Consensus 194 ~~~~~~p~~~~~~~~~~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~ 273 (625)
......|+|+....+++..+.+..++.+.+.+|+++|+|||||||+|+.|++.|+..|.++.+++.|.+|+.+.+ ..
T Consensus 343 ~~g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~---~~ 419 (546)
T 2gks_A 343 KQGRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSR---GL 419 (546)
T ss_dssp TTTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCT---TC
T ss_pred cCCCCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcc---cc
Confidence 456677899887777888888775556778999999999999999999999999988888889999999886543 22
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHH
Q 006920 274 DFFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 350 (625)
Q Consensus 274 ~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~ 350 (625)
.|....+... ...+...+...+. .|..||+|++++.+..|+.++++.+. ..+++|.+.|+.+.+.+|.
T Consensus 420 ~f~~~er~~~-------l~~i~~~~~~~l~-~G~~VI~d~~~~~~~~r~~~~~~l~~-~d~~vV~L~~~~e~~~~Rl 487 (546)
T 2gks_A 420 GFSKEDRITN-------ILRVGFVASEIVK-HNGVVICALVSPYRSARNQVRNMMEE-GKFIEVFVDAPVEVCEERD 487 (546)
T ss_dssp CSSHHHHHHH-------HHHHHHHHHHHHH-TTCEEEEECCCCCHHHHHHHHTTSCT-TCEEEEEEECCGGGHHHHC
T ss_pred cccHHHHHHH-------HHHHHHHHHHHHh-CCCEEEEEcCCCCHHHHHHHHHHhhc-CCEEEEEEeCCHHHHHHHh
Confidence 2322111111 1112222222333 56677999999999989888877322 2345566678888887774
No 43
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.22 E-value=1.2e-10 Score=113.05 Aligned_cols=140 Identities=11% Similarity=0.102 Sum_probs=87.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH------HHcCCCCCCcccCCCCHHHHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR------LKHGVNQSADFFRADNPEGMEARNEVAALAM 295 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk------~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l 295 (625)
.+.+|+|+|.|||||||+|+.|++.+++. +++.|.++. ...|. .+ ..... .. .+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~-----~i~~d~~~~~~~~~~~~~g~----~~----~~~~~---~~----~~ 76 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYP-----FIEGDALHPPENIRKMSEGI----PL----TDDDR---WP----WL 76 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCC-----EEEGGGGCCHHHHHHHHHTC----CC----CHHHH---HH----HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCE-----EEeCCcCcchhhHHHHhcCC----CC----Cchhh---HH----HH
Confidence 36789999999999999999999999988 899887631 11121 11 11111 01 11
Q ss_pred HHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHH
Q 006920 296 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 375 (625)
Q Consensus 296 ~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~ 375 (625)
..+...+ ..|..+|+|+++.....|+.+..+. +.++.+|++.|+.+++.+|...|... . . +.+
T Consensus 77 ~~l~~~~-~~~~~vivd~~~~~~~~~~~l~~~~--~~~~~vi~l~~~~e~~~~Rl~~R~~~----~--~-~~~------- 139 (202)
T 3t61_A 77 AAIGERL-ASREPVVVSCSALKRSYRDKLRESA--PGGLAFVFLHGSESVLAERMHHRTGH----F--M-PSS------- 139 (202)
T ss_dssp HHHHHHH-TSSSCCEEECCCCSHHHHHHHHHTS--TTCCEEEEEECCHHHHHHHHHHHHSS----C--C-CHH-------
T ss_pred HHHHHHH-hcCCCEEEECCCCCHHHHHHHHHhc--CCCeEEEEEeCCHHHHHHHHHHhhcc----C--C-CHH-------
Confidence 1222223 3456669999999988888887654 23345556678988888887766421 1 1 222
Q ss_pred HHHHhhhhccccCCCCCeeEEeec
Q 006920 376 NRLANYEKVYEPVDEGSYIKMIDM 399 (625)
Q Consensus 376 ~rl~~y~~~fEp~~e~~~i~~id~ 399 (625)
.+..+...++++.......+||+
T Consensus 140 -~~~~~~~~~~~~~~~~~~~~Id~ 162 (202)
T 3t61_A 140 -LLQTQLETLEDPRGEVRTVAVDV 162 (202)
T ss_dssp -HHHHHHHHCCCCTTSTTEEEEES
T ss_pred -HHHHHHHhcCCCCCCCCeEEEeC
Confidence 34444455666654444566776
No 44
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.20 E-value=6.9e-11 Score=112.33 Aligned_cols=116 Identities=22% Similarity=0.121 Sum_probs=69.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEE-ech----HHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF-NVG----KYRRLKHGVNQSADFFRADNPEGMEARNEVAALAME 296 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~-~~D----~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~ 296 (625)
++++|+++|+|||||||+|+.|++.++.. ++ +.| .+++.. . .....|... +...+ .+. +
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~-----~i~d~~~~g~~i~~~~-~-~g~~~~~~~--~~~~~---~~~----~ 67 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGS-----FVFEPEEMGQALRKLT-P-GFSGDPQEH--PMWIP---LML----D 67 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTC-----EECCTHHHHHHHHHTS-T-TCCSCGGGS--TTHHH---HHH----H
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCC-----EEEchhhhHHHHHHhC-c-cccchhhhh--HHHHH---HHH----H
Confidence 56799999999999999999999999876 55 532 344322 2 112122111 11111 111 1
Q ss_pred HHHHHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 297 DMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 297 ~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
.+...+..+|.+||+|+++.....++.+++. .+.+..+.+|++.|+.+.+++|...|
T Consensus 68 ~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R 125 (183)
T 2vli_A 68 ALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRD 125 (183)
T ss_dssp HHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC
T ss_pred HHHHHHHhCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhc
Confidence 1122344456777999999988778777766 55666555677788988888887654
No 45
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.18 E-value=1e-10 Score=132.55 Aligned_cols=121 Identities=22% Similarity=0.247 Sum_probs=86.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
..++.+|+|+|+|||||||+|+.|+++|...|..+..++.|.+|. ++.....|...++.+.++...+++..+
T Consensus 49 ~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~---~L~~~~~fs~~dree~~r~i~eva~~~----- 120 (630)
T 1x6v_B 49 GFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ---GLNKNLGFSPEDREENVRRIAEVAKLF----- 120 (630)
T ss_dssp SCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT---TTTTTCCSSHHHHHHHHHHHHHHHHHH-----
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh---ccCccccCChhhhHHHHHHHHHHHHHH-----
Confidence 357899999999999999999999999965566666777777764 333333343233444444333333322
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHH
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 351 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i 351 (625)
...|.+||.|.+++.+..|+.++++ .+.+.+++.|++.|+.+++.+|..
T Consensus 121 ---l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~ 170 (630)
T 1x6v_B 121 ---ADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDV 170 (630)
T ss_dssp ---HHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCT
T ss_pred ---HhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhc
Confidence 2367888999888777889999998 566777888888999988888853
No 46
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.17 E-value=1.4e-10 Score=113.81 Aligned_cols=119 Identities=21% Similarity=0.164 Sum_probs=79.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHc-ccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM 298 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~-~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~ 298 (625)
..++.+|+++|+|||||||+|+.|++.++ ..|....+++.|.+|..+ .....++...+...+ ..+...+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l---~~~~~~~~~~r~~~~-------~~~~~~~ 91 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL---NKDLGFSEADRNENI-------RRIAEVA 91 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTT---TTTCCSSHHHHHHHH-------HHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhh---ccccCCCHHHHHHHH-------HHHHHHH
Confidence 44578999999999999999999999998 666677799988887533 222223222222222 2222212
Q ss_pred HHHHHcCCcEEEEecCCCcHHHHHHHHHHHc-------CCCeEEEEEEecChHHHHHH
Q 006920 299 ISWMHEGGQVGIFDATNSSRKRRNMLMKMAE-------GNCKIIFLETICNDRDIIER 349 (625)
Q Consensus 299 ~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~-------~~~~vvfle~~~~~e~i~~R 349 (625)
...+. .|.+||+|..+.....|+.++.+.. .+.+..+|++.|+.+++.+|
T Consensus 92 ~~~l~-~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R 148 (211)
T 1m7g_A 92 KLFAD-SNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQR 148 (211)
T ss_dssp HHHHH-TTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTS
T ss_pred HHHHH-CCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHh
Confidence 22233 5667799977666678888888732 24556777778999888877
No 47
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.17 E-value=5.7e-10 Score=106.55 Aligned_cols=164 Identities=18% Similarity=0.257 Sum_probs=90.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCC------cccCCCCHHHHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA------DFFRADNPEGMEARNEVAALAM 295 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~------~f~~~~~~~~~~~~~~va~~~l 295 (625)
+|.+|+++|.|||||||+|+.|++.+++. +++.|++.+......... .+.........+.........+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~ 76 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYT-----HLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREM 76 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCe-----EEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence 47899999999999999999999999987 899987643322111000 0000000000011111111122
Q ss_pred HHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCC-CeEEEEEEecChHHHHHHHHHhhhc-cCCCCCCCCCHHHHHHH
Q 006920 296 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGN-CKIIFLETICNDRDIIERNIRLKIQ-QSPDYAEEPDFEAGLQD 373 (625)
Q Consensus 296 ~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~-~~vvfle~~~~~e~i~~R~i~rr~~-~~pd~sd~~d~e~~~~~ 373 (625)
......+ ..+..+|+|+.......++.+....... ..-.+|.+.|+.+.+++|...|... .+++ . .. +.
T Consensus 77 ~~~~~~~-~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~---~-~~----~~ 147 (196)
T 1tev_A 77 DQTMAAN-AQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSD---D-NR----ES 147 (196)
T ss_dssp HHHHHHC-TTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCS---C-CH----HH
T ss_pred Hhhhccc-cCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCC---C-CH----HH
Confidence 2211111 2356779999998887777666553222 2234566688999999888776432 2232 1 22 33
Q ss_pred HHHHHHhhhhccccC----CCCCeeEEeec
Q 006920 374 FKNRLANYEKVYEPV----DEGSYIKMIDM 399 (625)
Q Consensus 374 ~~~rl~~y~~~fEp~----~e~~~i~~id~ 399 (625)
+.+|+..|....+|+ .+...+++||.
T Consensus 148 ~~~~~~~~~~~~~~~~~~y~~~~~~~~id~ 177 (196)
T 1tev_A 148 LEKRIQTYLQSTKPIIDLYEEMGKVKKIDA 177 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEEET
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCCEEEEEC
Confidence 445566665544442 12234556776
No 48
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.17 E-value=9.5e-11 Score=111.84 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=80.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 302 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l 302 (625)
+..|+++|+|||||||+|+.|++.+++. +++.|.+++...|..... ++...+...+ ......+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~-----~i~~d~~~~~~~g~~~~~-~~~~~g~~~~-------~~~~~~~~~~~ 71 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRI-----LYDSDKEIEKRTGADIAW-IFEMEGEAGF-------RRREREMIEAL 71 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHTSCHHH-HHHHHHHHHH-------HHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHcCCChhh-HHHHhCHHHH-------HHHHHHHHHHH
Confidence 4579999999999999999999999998 999999988777654331 1111112222 22222222233
Q ss_pred HcCCcEEEEec---CCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCC-HHHHHHHHHHHH
Q 006920 303 HEGGQVGIFDA---TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPD-FEAGLQDFKNRL 378 (625)
Q Consensus 303 ~~~g~vvIvDa---tn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d-~e~~~~~~~~rl 378 (625)
...... |++. +......|+.+.. .+ ++|++.|+.+++.+|...+....+|...+. + .+.+.+.+.+|.
T Consensus 72 ~~~~~~-vi~~gg~~~~~~~~~~~l~~---~~---~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~-~~~~~l~~~~~~r~ 143 (185)
T 3trf_A 72 CKLDNI-ILATGGGVVLDEKNRQQISE---TG---VVIYLTASIDTQLKRIGQKGEMRRPLFIKN-NSKEKLQQLNEIRK 143 (185)
T ss_dssp HHSSSC-EEECCTTGGGSHHHHHHHHH---HE---EEEEEECCHHHHHHHHHCCTTCSSCCCCCH-HHHHHHHHHHHHHH
T ss_pred HhcCCc-EEecCCceecCHHHHHHHHh---CC---cEEEEECCHHHHHHHHhhcCCCCCCCCCCC-CHHHHHHHHHHHHH
Confidence 334444 4434 2334445544433 22 344457788777777622222346766543 3 234555566666
Q ss_pred Hhhhh
Q 006920 379 ANYEK 383 (625)
Q Consensus 379 ~~y~~ 383 (625)
+.|..
T Consensus 144 ~~y~~ 148 (185)
T 3trf_A 144 PLYQA 148 (185)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 66643
No 49
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.16 E-value=2.9e-11 Score=117.44 Aligned_cols=159 Identities=20% Similarity=0.239 Sum_probs=89.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCC-C---cccCCCCHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS-A---DFFRADNPEGMEARNEVAALA 294 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~-~---~f~~~~~~~~~~~~~~va~~~ 294 (625)
+..|++|+|+|.|||||||+|+.|++.+++. +++.|++ |+...+.... . .++..... .. ......+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~-----~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~-~~---~~~~~~~ 87 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIP-----QISTGELFRRNIEEGTKLGVEAKRYLDAGDL-VP---SDLTNEL 87 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHHHTCC-CC---HHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCc-----EEehhHHHHHHHHcCChHHHHHHHHHHcCCc-cc---HHHHHHH
Confidence 5678899999999999999999999999988 8998875 4423221100 0 00000000 00 0011111
Q ss_pred HHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCe-EEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHH
Q 006920 295 MEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 372 (625)
Q Consensus 295 l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~-vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~ 372 (625)
+.+.......++ .+|+|+.......++.+..+ .+.+.. ..+|.+.|+.+++++|...|. +++ . +. +
T Consensus 88 ~~~~~~~~~~~~-~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~---r~~---~-~~----e 155 (201)
T 2cdn_A 88 VDDRLNNPDAAN-GFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG---RAD---D-TD----D 155 (201)
T ss_dssp HHHHTTSGGGTT-CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC---CTT---C-SH----H
T ss_pred HHHHHhcccCCC-eEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC---CCC---C-CH----H
Confidence 111111112333 46999987777777777776 444432 245666889888888876552 222 1 22 3
Q ss_pred HHHHHHHhhhhccccCCC--CCeeEEeec
Q 006920 373 DFKNRLANYEKVYEPVDE--GSYIKMIDM 399 (625)
Q Consensus 373 ~~~~rl~~y~~~fEp~~e--~~~i~~id~ 399 (625)
.+.+|+..|....+|+.+ ....++||.
T Consensus 156 ~~~~r~~~~~~~~~~~~~~~~~~~~~Id~ 184 (201)
T 2cdn_A 156 VILNRMKVYRDETAPLLEYYRDQLKTVDA 184 (201)
T ss_dssp HHHHHHHHHHHHTTTHHHHTTTTEEEEEC
T ss_pred HHHHHHHHHHHhhHHHHHHhcCcEEEEeC
Confidence 456677766655443221 234556675
No 50
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.16 E-value=8.4e-11 Score=118.91 Aligned_cols=127 Identities=12% Similarity=0.103 Sum_probs=81.1
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcC---CCCCCcccCCCCHHHHHHHHHHHHHHH
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG---VNQSADFFRADNPEGMEARNEVAALAM 295 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g---~~~~~~f~~~~~~~~~~~~~~va~~~l 295 (625)
....|.+|+|+|+|||||||+|+.|++.++. ...+++.|.+|+...+ +... + ........+ .......
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~---~~~~~~~D~~r~~~~~~~~i~~~--~-g~~~~~~~~---~~~~~~~ 98 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG---NIVIIDGDSFRSQHPHYLELQQE--Y-GKDSVEYTK---DFAGKMV 98 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT---CCEEECGGGGGTTSTTHHHHHTT--C-SSTTHHHHH---HHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC---CcEEEecHHHHHhchhHHHHHHH--c-CchHHHHhh---HHHHHHH
Confidence 3567899999999999999999999999862 2348899988763211 0000 0 011111111 1111122
Q ss_pred HHHHHHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHhh
Q 006920 296 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 296 ~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~rr 354 (625)
..+...+...|..+|+|+++.....+..+..+ .+.|+.+.++.+.|+.+.+.+|...|.
T Consensus 99 ~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 99 ESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence 22222233355556999999887777777766 778888877788899888888876653
No 51
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.16 E-value=1.8e-10 Score=112.06 Aligned_cols=119 Identities=18% Similarity=0.179 Sum_probs=80.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
..++.+|+++|+|||||||+++.|++.++..|.-+.+++.|.+++.+ .....+........+.....++
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------- 90 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGL---NRDLSFKAEDRAENIRRVGEVA-------- 90 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT---TTTCCSSHHHHHHHHHHHHHHH--------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHh---hcccCcChHHHHHHHHHHHHHH--------
Confidence 35678999999999999999999999997656555688998887532 1221222111111111112222
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHH
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 350 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~ 350 (625)
..+...+..+|+++.++.+..|+.++++.. +..++.|++.|+.+++.+|+
T Consensus 91 ~~~~~~~~~vi~~~~~~~~~~r~~~~~~~~-~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 91 KLFADAGIICIASLISPYRTDRDACRSLLP-EGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HHHHHTTCEEEEECCCCCHHHHHHHHHTSC-TTSEEEEEECCCHHHHHHHC
T ss_pred HHHHhCCceEEEecCCchHHHHHHHHHhcC-CCCEEEEEEeCCHHHHHHhc
Confidence 223346777899999999999999988743 34566677789998888885
No 52
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=5.3e-10 Score=108.55 Aligned_cols=134 Identities=17% Similarity=0.151 Sum_probs=79.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 301 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~ 301 (625)
++.+|+++|.|||||||+|+.|++.+++. +++.|++.....|..... ++...+... .......+...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~-----~i~~d~~~~~~~g~~i~~-~~~~~~~~~-------~~~~e~~~l~~ 90 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVP-----FIDLDWYIEERFHKTVGE-LFTERGEAG-------FRELERNMLHE 90 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCHHH-HHHHHHHHH-------HHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcchHHHHHHhCCcHHH-HHHhcChHH-------HHHHHHHHHHH
Confidence 45689999999999999999999999988 999999877666644322 111111111 22222222333
Q ss_pred HHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHH
Q 006920 302 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDF 374 (625)
Q Consensus 302 l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~ 374 (625)
+...+.. |++..+.....++.+..+.+ ...++|| .|+.+++.+|...++ ..+|...+. +++++.+.+
T Consensus 91 l~~~~~~-vi~~ggg~~~~~~~~~~l~~-~~~vi~L--~~~~e~l~~Rl~~~~-~~Rp~~~~~-~~~~~~~~i 157 (199)
T 3vaa_A 91 VAEFENV-VISTGGGAPCFYDNMEFMNR-TGKTVFL--NVHPDVLFRRLRIAK-QQRPILQGK-EDDELMDFI 157 (199)
T ss_dssp HTTCSSE-EEECCTTGGGSTTHHHHHHH-HSEEEEE--ECCHHHHHHHHHHTG-GGCGGGTTC-CHHHHHHHH
T ss_pred HhhcCCc-EEECCCcEEccHHHHHHHHc-CCEEEEE--ECCHHHHHHHHhcCC-CCCCCcCCC-ChhhHHHHH
Confidence 3344444 77766555444444444433 2345555 678888877765233 346766665 664443333
No 53
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.08 E-value=4.7e-10 Score=108.98 Aligned_cols=113 Identities=17% Similarity=0.166 Sum_probs=70.0
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH------HHHcCCCCCCcccCCCCHHHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR------RLKHGVNQSADFFRADNPEGMEARNEVAALA 294 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R------k~~~g~~~~~~f~~~~~~~~~~~~~~va~~~ 294 (625)
.++.+|+++|.|||||||+++.|++.+++. +++.|.++ +...|.... .......+...+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~-----~i~~d~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~---- 93 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE-----FAEADAFHSPENIATMQRGIPLT----DEDRWPWLRSLAEW---- 93 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCE-----EEEGGGGSCHHHHHHHHTTCCCC----HHHHHHHHHHHHHH----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCe-----EEcccccccHHHHHHHhcCCCCC----CcccccHHHHHHHH----
Confidence 456799999999999999999999999877 88888763 222232111 00001111111111
Q ss_pred HHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 295 MEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 295 l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
+...+. .+..+|+|+++..+..|+.++++.. ++.+|++.|+.+++.+|...|
T Consensus 94 ---~~~~~~-~g~~viid~~~~~~~~~~~l~~~~~---~~~vv~l~~~~e~l~~Rl~~R 145 (200)
T 4eun_A 94 ---MDARAD-AGVSTIITCSALKRTYRDVLREGPP---SVDFLHLDGPAEVIKGRMSKR 145 (200)
T ss_dssp ---HHHHHH-TTCCEEEEECCCCHHHHHHHTTSSS---CCEEEEEECCHHHHHHHHTTC
T ss_pred ---HHHHHh-cCCCEEEEchhhhHHHHHHHHHhCC---ceEEEEEeCCHHHHHHHHHhc
Confidence 122223 4555699999998888777665421 344556678988887777544
No 54
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.06 E-value=1.1e-09 Score=103.49 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=70.7
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH------HHcCCCCCCcccCCCCHHHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR------LKHGVNQSADFFRADNPEGMEARNEVAALA 294 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk------~~~g~~~~~~f~~~~~~~~~~~~~~va~~~ 294 (625)
..+.+|+++|.|||||||+++.|++.+++. +++.|.+++ ...|..... ......+...+.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~-----~i~~d~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~---- 72 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAA-----FLDGDFLHPRRNIEKMASGEPLND----DDRKPWLQALNDA---- 72 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCE-----EEEGGGGCCHHHHHHHHTTCCCCH----HHHHHHHHHHHHH----
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcE-----EEeCccccchHHHHHhhcCcCCCc----cccccHHHHHHHH----
Confidence 456799999999999999999999999877 889887632 123322210 0011111111111
Q ss_pred HHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 295 MEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 295 l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
+...+. .+..+|+|+++..+..|+.+++ .+..+.+|++.|+.+.+++|...|
T Consensus 73 ---~~~~~~-~~~~~vi~~~~~~~~~~~~l~~---~~~~~~vv~l~~~~e~~~~R~~~R 124 (175)
T 1knq_A 73 ---AFAMQR-TNKVSLIVCSALKKHYRDLLRE---GNPNLSFIYLKGDFDVIESRLKAR 124 (175)
T ss_dssp ---HHHHHH-HCSEEEEECCCCSHHHHHHHHT---TCTTEEEEEEECCHHHHHHHHHTS
T ss_pred ---HHHHHh-cCCcEEEEeCchHHHHHHHHHh---cCCCEEEEEEECCHHHHHHHHHhc
Confidence 112222 3456699998887776665543 333455666688988888887654
No 55
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.06 E-value=9.7e-09 Score=99.38 Aligned_cols=125 Identities=15% Similarity=0.177 Sum_probs=72.4
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHc--CCCCCC---cccCCCCHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKH--GVNQSA---DFFRADNPEGMEARNEVAAL 293 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~--g~~~~~---~f~~~~~~~~~~~~~~va~~ 293 (625)
..++.+|+++|.|||||||+|+.|++.+++. +++.|++ |+... |..... .+.... .... .......
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~-----~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g-~~~~--~~~~~~~ 83 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFV-----HLSAGDLLRAEQGRAGSQYGELIKNCIKEG-QIVP--QEITLAL 83 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCE-----EEEHHHHHHHHHHSTTCSCHHHHHHHHHTT-CCCC--HHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCce-----EEeHHHHHHHHHhccCCHHHHHHHHHHHcC-CcCC--HHHHHHH
Confidence 4567899999999999999999999999887 8998875 43221 111000 000000 0000 0011112
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhh
Q 006920 294 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 294 ~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr 354 (625)
+.+.+...+..++..+|+|+..........+...... .. +.|.+.|+.+.+++|...|.
T Consensus 84 l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~-~~-~~i~l~~~~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 84 LRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVE-SK-FILFFDCPEDIMLERLLERG 142 (203)
T ss_dssp HHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCC-CS-EEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCC-CC-EEEEEECCHHHHHHHHHhcc
Confidence 2222334455555667999877666655555444221 22 24445789888888877664
No 56
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.06 E-value=6.9e-09 Score=98.78 Aligned_cols=121 Identities=15% Similarity=0.259 Sum_probs=72.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHc-CCCCCC---cccCCCCHHHHHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKH-GVNQSA---DFFRADNPEGMEARNEVAALAME 296 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~-g~~~~~---~f~~~~~~~~~~~~~~va~~~l~ 296 (625)
.+.+|+++|.|||||||+|+.|++.+++. +++.|++ ++... |..... .++....... ......++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~----~~~~~~~l~ 75 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWV-----HLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVP----SIVTVKLLK 75 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCC----HHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCe-----EeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC----HHHHHHHHH
Confidence 46799999999999999999999999988 9999875 44332 211000 0000000000 011111111
Q ss_pred HHHHHHH-cCCcEEEEecCCCcHHHHHHHHHHHcCC-CeEEEEEEecChHHHHHHHHHhh
Q 006920 297 DMISWMH-EGGQVGIFDATNSSRKRRNMLMKMAEGN-CKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 297 ~~~~~l~-~~g~vvIvDatn~~~~~R~~~~~l~~~~-~~vvfle~~~~~e~i~~R~i~rr 354 (625)
..+. ..+..+|+|+.......+..+......+ ..-..+.+.|+.+.+++|...|.
T Consensus 76 ---~~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 132 (194)
T 1qf9_A 76 ---NAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRG 132 (194)
T ss_dssp ---HHHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred ---HHHHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhcc
Confidence 1122 2466779999888877777776663321 22235566889888888877664
No 57
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.04 E-value=4.4e-09 Score=100.77 Aligned_cols=161 Identities=15% Similarity=0.191 Sum_probs=85.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHH-HcCCCCC-C---cccCCCCHHHHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL-KHGVNQS-A---DFFRADNPEGMEARNEVAALAM 295 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~-~~g~~~~-~---~f~~~~~~~~~~~~~~va~~~l 295 (625)
.++.+|+++|.|||||||+|+.|++.+++. +++.|++.+. ..+.... . .++..... .. ......++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~-~~---~~~~~~~~ 77 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYT-----HLSTGDLLRSEVSSGSARGKKLSEIMEKGQL-VP---LETVLDML 77 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCHHHHHHHHHHHTTCC-CC---HHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCe-----EEcHHHHHHHHHHcCChHHHHHHHHHHcCCc-CC---HHHHHHHH
Confidence 356799999999999999999999999988 8998875432 2110000 0 00000000 00 01111122
Q ss_pred HHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHH
Q 006920 296 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 375 (625)
Q Consensus 296 ~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~ 375 (625)
..........|..+|+|+.......++.+........ .++.+.|+.+.+.+|...|... .+. .+...+.+.
T Consensus 78 ~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~--~vi~l~~~~e~~~~R~~~R~~~-~~~------~~~~~~~~~ 148 (196)
T 2c95_A 78 RDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPT--LLLYVDAGPETMTQRLLKRGET-SGR------VDDNEETIK 148 (196)
T ss_dssp HHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCS--EEEEEECCHHHHHHHHHHHHTS-SSC------GGGSHHHHH
T ss_pred HHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCC--EEEEEECCHHHHHHHHHccCCc-CCC------CCCCHHHHH
Confidence 2222212224556799987766666665554432222 3444578988888887665321 111 122234555
Q ss_pred HHHHhhhhccccC----CCCCeeEEeec
Q 006920 376 NRLANYEKVYEPV----DEGSYIKMIDM 399 (625)
Q Consensus 376 ~rl~~y~~~fEp~----~e~~~i~~id~ 399 (625)
+|+..|....+|+ ....+++.||.
T Consensus 149 ~r~~~~~~~~~~~~~~~~~~~~~~~Id~ 176 (196)
T 2c95_A 149 KRLETYYKATEPVIAFYEKRGIVRKVNA 176 (196)
T ss_dssp HHHHHHHHHTHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhcCcEEEEEC
Confidence 5666665544432 11244566775
No 58
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.03 E-value=3.5e-09 Score=101.69 Aligned_cols=160 Identities=14% Similarity=0.200 Sum_probs=89.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHc-CCCCC---CcccCCCCHHHHHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKH-GVNQS---ADFFRADNPEGMEARNEVAALAME 296 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~-g~~~~---~~f~~~~~~~~~~~~~~va~~~l~ 296 (625)
.+.+|+++|.|||||||+|+.|++++++. +++.|++ ++... +.... ..++....... ......++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~----~~~~~~~~~ 81 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFT-----HLSTGELLREELASESERSKLIRDIMERGDLVP----SGIVLELLK 81 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC----HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCe-----EEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCC----HHHHHHHHH
Confidence 35689999999999999999999999987 9998876 43321 10000 00000000000 011111222
Q ss_pred HHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHH
Q 006920 297 DMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 376 (625)
Q Consensus 297 ~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~ 376 (625)
+........+..+|+|+.......++.+..... ... +.|.+.|+.+.+.+|...|.. + . . ..++..+.+.+
T Consensus 82 ~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~-~~~-~~i~l~~~~~~~~~R~~~R~~---~--~-~-~~~~~~~~~~~ 152 (199)
T 2bwj_A 82 EAMVASLGDTRGFLIDGYPREVKQGEEFGRRIG-DPQ-LVICMDCSADTMTNRLLQMSR---S--S-L-PVDDTTKTIAK 152 (199)
T ss_dssp HHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTC-CCS-EEEEEECCHHHHHHHHHHTCC---C--C-S-CHHHHHHHHHH
T ss_pred HHHhcccccCccEEEeCCCCCHHHHHHHHHhcC-CCC-EEEEEECCHHHHHHHHHcCCC---C--C-C-CCCCCHHHHHH
Confidence 222112224567799998888777666654321 111 244456788887777765421 1 1 1 34445677778
Q ss_pred HHHhhhhccccCCC----CCeeEEeec
Q 006920 377 RLANYEKVYEPVDE----GSYIKMIDM 399 (625)
Q Consensus 377 rl~~y~~~fEp~~e----~~~i~~id~ 399 (625)
|+..|....+|+.+ ...+.+||.
T Consensus 153 r~~~~~~~~~~~~~~~~~~~~~~~id~ 179 (199)
T 2bwj_A 153 RLEAYYRASIPVIAYYETKTQLHKINA 179 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHSEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 87777665554321 134466775
No 59
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.03 E-value=5.1e-10 Score=106.79 Aligned_cols=134 Identities=19% Similarity=0.224 Sum_probs=73.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 304 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~ 304 (625)
+|+|+|.|||||||+|+.|++.+++. +++.|.+++...|.... .++...+...++... ..++. ..+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~D~~~~~~~g~~~~-~~~~~~g~~~~~~~~---~~~~~---~~~~~ 71 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVG-----LLDTDVAIEQRTGRSIA-DIFATDGEQEFRRIE---EDVVR---AALAD 71 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHSSCHH-HHHHHHCHHHHHHHH---HHHHH---HHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC-----EEeCchHHHHHcCCCHH-HHHHHhChHHHHHHH---HHHHH---HHHhc
Confidence 59999999999999999999999998 99999988766664322 122212222222211 11122 12222
Q ss_pred CCcEEEEecCC--CcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHH-HHHHHhh
Q 006920 305 GGQVGIFDATN--SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDF-KNRLANY 381 (625)
Q Consensus 305 ~g~vvIvDatn--~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~-~~rl~~y 381 (625)
...+|.++.+ .....|+.+. .+ .++|| .|+.+.+++|...| ..+|.+.+. +..+.++.+ .+|.+.|
T Consensus 72 -~~~vi~~g~~~v~~~~~~~~l~----~~-~vV~L--~~~~e~~~~Rl~~r--~~r~~~~~~-~~~~~i~~~~~~r~~~~ 140 (184)
T 2iyv_A 72 -HDGVLSLGGGAVTSPGVRAALA----GH-TVVYL--EISAAEGVRRTGGN--TVRPLLAGP-DRAEKYRALMAKRAPLY 140 (184)
T ss_dssp -CCSEEECCTTGGGSHHHHHHHT----TS-CEEEE--ECCHHHHHHHTTCC--CCCSSTTSC-CHHHHHHHHHHHHHHHH
T ss_pred -CCeEEecCCcEEcCHHHHHHHc----CC-eEEEE--eCCHHHHHHHHhCC--CCCCCccCC-CHHHHHHHHHHHHHHHH
Confidence 3332333221 2333444332 23 34454 67888777776543 234555544 444433333 4444444
No 60
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.03 E-value=1e-09 Score=110.35 Aligned_cols=174 Identities=14% Similarity=0.145 Sum_probs=103.1
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCCCcccCCCCHHHHH
Q 006920 207 AAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGME 285 (625)
Q Consensus 207 ~~~~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~~~f~~~~~~~~~~ 285 (625)
...+++++|.. .+.+|++|+++|.|||||||+|+.|+++++.. +++.|++ |+...... ..+..
T Consensus 14 ~~~~~~~~~~~-~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~-----~is~~~~~r~~~~~~~----------~~g~~ 77 (243)
T 3tlx_A 14 LLNELKRRYAC-LSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYC-----HLSTGDLLREAAEKKT----------ELGLK 77 (243)
T ss_dssp HHHHHHHHHHH-HTSCCEEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHTTSSS----------HHHHH
T ss_pred HHHHHHHHHHh-ccCCCcEEEEECCCCCCHHHHHHHHHHHhCCe-----EEecHHHHHHHHhccc----------hHHHH
Confidence 34567777763 35689999999999999999999999999988 9998765 44322100 10000
Q ss_pred HH----------HHHHHHHHHHHHHHHHc--CCcEEEEecCCCcHHHHHHHHHH-HcCCCe-EEEEEEecChHHHHHHHH
Q 006920 286 AR----------NEVAALAMEDMISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNI 351 (625)
Q Consensus 286 ~~----------~~va~~~l~~~~~~l~~--~g~vvIvDatn~~~~~R~~~~~l-~~~~~~-vvfle~~~~~e~i~~R~i 351 (625)
.. ......++ ...+.. .+..+|+|+......+...+.++ ...+.. -.++.+.|+++++++|..
T Consensus 78 i~~~~~~g~~~~~~~~~~~~---~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~ 154 (243)
T 3tlx_A 78 IKNIINEGKLVDDQMVLSLV---DEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRIS 154 (243)
T ss_dssp HHHHHHTTCCCCHHHHHHHH---HHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHH---HHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHH
Confidence 00 01111111 122222 25567999966666666766665 443332 244556889888888877
Q ss_pred Hhhhcc-----------CCCCCCC---------CCHHHHHHHHHHHHHhhhhccccCCCC----CeeEEeec
Q 006920 352 RLKIQQ-----------SPDYAEE---------PDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 399 (625)
Q Consensus 352 ~rr~~~-----------~pd~sd~---------~d~e~~~~~~~~rl~~y~~~fEp~~e~----~~i~~id~ 399 (625)
.|+... -|...+. ...++-.+.+.+|+..|....+|+.+- ..++.||.
T Consensus 155 ~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~ 226 (243)
T 3tlx_A 155 GRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDA 226 (243)
T ss_dssp TEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEET
T ss_pred cCCCCcccCcccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEC
Confidence 664210 0000000 012345678888999998887776442 34556665
No 61
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.02 E-value=4.6e-09 Score=104.21 Aligned_cols=158 Identities=16% Similarity=0.209 Sum_probs=95.1
Q ss_pred CCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHHHHcCCCCCCcccCCCCHHHHHHH---------
Q 006920 218 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEAR--------- 287 (625)
Q Consensus 218 ~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk~~~g~~~~~~f~~~~~~~~~~~~--------- 287 (625)
.+.++|.+|++.|.|||||+|.|+.|+++++.. ++++++ +|...... .+.+....
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~-----hIstGdllR~~i~~~----------t~lg~~~~~~~~~G~lV 88 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN-----HLSSGDLLRAEVQSG----------SPKGKELKAMMERGELV 88 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE-----EECHHHHHHHHHTTC----------CHHHHHHHHHHHHTCCC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCc-----eEcHHHHHHHHHHcC----------CchHHHHHHHHhcCCCC
Confidence 357788999999999999999999999999998 999876 55543211 11111111
Q ss_pred -HHHHHHHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCC
Q 006920 288 -NEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPD 366 (625)
Q Consensus 288 -~~va~~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d 366 (625)
.++...++.+.+.-.......+|+|+...+..+-+.+.+... . ...+|.+.|+++.+++|...|... .+ .
T Consensus 89 pde~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~-~-~~~vi~l~v~~e~~~~Rl~~R~~~-----~~--R 159 (217)
T 3umf_A 89 PLEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVC-P-CLCVINFDVSEEVMRKRLLKRAET-----SN--R 159 (217)
T ss_dssp CHHHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTC-C-CSEEEEEECCHHHHHHHHSCC-------------
T ss_pred CHHHHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHhCC-c-cCEEEeccCCHHHHHHHHhccccc-----CC--C
Confidence 122222222222122233445699987666666555544311 1 123455578988888887665422 11 2
Q ss_pred HHHHHHHHHHHHHhhhhccccCCC----CCeeEEeec
Q 006920 367 FEAGLQDFKNRLANYEKVYEPVDE----GSYIKMIDM 399 (625)
Q Consensus 367 ~e~~~~~~~~rl~~y~~~fEp~~e----~~~i~~id~ 399 (625)
.++-.+.+.+|++.|.+..+|+-+ ...++.||.
T Consensus 160 ~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg 196 (217)
T 3umf_A 160 VDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDA 196 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEET
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 344567788999999988777632 244566776
No 62
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.02 E-value=2.5e-09 Score=101.73 Aligned_cols=119 Identities=19% Similarity=0.185 Sum_probs=74.0
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 300 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~ 300 (625)
.++.+|+++|.+||||||+++.|++.+...|.....++.|.+++.+ .....+...++...++.... ...
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--------~~~ 71 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGL---NKNLGFSPEDREENVRRIAE--------VAK 71 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT---TTTCCSSHHHHHHHHHHHHH--------HHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHH---hhccccccccHHHHHHHHHH--------HHH
Confidence 3568999999999999999999999985445556567777776532 11111211111222221111 112
Q ss_pred HHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHH
Q 006920 301 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERN 350 (625)
Q Consensus 301 ~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~ 350 (625)
.+...+.+++.+...+....|+.++.+ ...+.+...|++.|+.+.+++|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~ 122 (179)
T 2pez_A 72 LFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRD 122 (179)
T ss_dssp HHHHTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHC
T ss_pred HHHHCCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHH
Confidence 233356666667666666667777776 55566666777789988888885
No 63
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.01 E-value=5e-10 Score=106.78 Aligned_cols=119 Identities=14% Similarity=0.208 Sum_probs=70.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCC----CcccCCCCHHHHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFRADNPEGMEARNEVAALAM 295 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~----~~f~~~~~~~~~~~~~~va~~~l 295 (625)
.++++|+++|.|||||||+|+.|++.+++. +++.|++ |+...+.... ..++....... .......+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~----~~~~~~~~ 72 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFK-----KLSTGDILRDHVARGTPLGERVRPIMERGDLVP----DDLILELI 72 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCE-----EECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC----HHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCe-----EecHHHHHHHHHHcCChHHHHHHHHHHcCCcCC----HHHHHHHH
Confidence 356899999999999999999999999988 8998764 4332221000 00000000000 00011111
Q ss_pred HHHHHHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCe-EEEEEEecChHHHHHHHHHhh
Q 006920 296 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 296 ~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~-vvfle~~~~~e~i~~R~i~rr 354 (625)
...+. .+ +|+|+.......+..+..+ .+.+.. -.++.+.|+.+.+++|...|.
T Consensus 73 ---~~~l~-~~--~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 73 ---REELA-ER--VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA 127 (186)
T ss_dssp ---HHHCC-SE--EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred ---HHHhc-CC--EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 11222 22 6999988777777766665 444542 356667889888888877663
No 64
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.00 E-value=2.9e-09 Score=99.29 Aligned_cols=117 Identities=12% Similarity=0.068 Sum_probs=69.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCCCcccCCCCHHHHHH-HHHHHHH-HHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEA-RNEVAAL-AMEDMIS 300 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~~~f~~~~~~~~~~~-~~~va~~-~l~~~~~ 300 (625)
++|+++|.|||||||+|+.| +.+++. +++.|++ |+........ .......... ....... ....+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~-----~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAK-----VIVMSDVVRKRYSIEAKP----GERLMDFAKRLREIYGDGVVARLCVE 71 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCE-----EEEHHHHHHHHHHHHC-------CCHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCc-----EEEHhHHHHHHHHhcCCC----hhHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 58999999999999999999 888888 8887764 4432111100 0000111111 1110001 1122223
Q ss_pred HH-HcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 301 WM-HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 301 ~l-~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
.+ ...+..+|+|+. .....++.+.+.... ++.+|.+.|+.+.+.+|...|
T Consensus 72 ~l~~~~~~~vi~dg~-~~~~~~~~l~~~~~~--~~~~i~l~~~~~~~~~R~~~R 122 (179)
T 3lw7_A 72 ELGTSNHDLVVFDGV-RSLAEVEEFKRLLGD--SVYIVAVHSPPKIRYKRMIER 122 (179)
T ss_dssp HHCSCCCSCEEEECC-CCHHHHHHHHHHHCS--CEEEEEEECCHHHHHHHHHTC
T ss_pred HHHhcCCCeEEEeCC-CCHHHHHHHHHHhCC--CcEEEEEECCHHHHHHHHHhc
Confidence 34 145667799997 777888888777543 455566678988888887654
No 65
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.00 E-value=2.2e-09 Score=105.57 Aligned_cols=124 Identities=17% Similarity=0.179 Sum_probs=69.0
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCCC----cccCCCCHHHHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSA----DFFRADNPEGMEARNEVAALAM 295 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~~----~f~~~~~~~~~~~~~~va~~~l 295 (625)
+++++|+++|.|||||||+|+.|++++++. +++.|++ |+...+..... .++....... ......++
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~----~~~~~~~l 72 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAA-----HLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS----DDIMVNMI 72 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC----HHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCce-----EEehhHHHHHHHHcCChHHHHHHHHHHCCCcCC----HHHHHHHH
Confidence 356789999999999999999999999987 8999765 44332211000 0000000000 01111111
Q ss_pred HHHHH-HHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeE-EEEEEecChHHHHHHHHHhh
Q 006920 296 EDMIS-WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 296 ~~~~~-~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~v-vfle~~~~~e~i~~R~i~rr 354 (625)
..... .... +..+|+|+.......++.+..+ .+.+..+ ++|++.|+.+.+++|...|+
T Consensus 73 ~~~l~~~~~~-~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~ 133 (220)
T 1aky_A 73 KDELTNNPAC-KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRL 133 (220)
T ss_dssp HHHHHHCGGG-GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HHHHHhcccc-CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence 11111 1112 3345899855556666666555 3334322 45556789888888876553
No 66
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.97 E-value=6.6e-09 Score=102.22 Aligned_cols=157 Identities=23% Similarity=0.324 Sum_probs=97.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHHHHcCCCCCCcccCCCCHHHHHHH----------HHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEAR----------NEVAA 292 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk~~~g~~~~~~f~~~~~~~~~~~~----------~~va~ 292 (625)
++|++.|.|||||+|.|+.|+++++.. ++++++ +|+..... .+.+.... .++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~-----~istGdllR~~i~~~----------t~lg~~~~~~~~~G~lvpd~iv~ 65 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFV-----HISTGDILREAVQKG----------TPLGKKAKEYMERGELVPDDLII 65 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHHT----------CHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCe-----EEcHHHHHHHHHHhc----------ChhhhhHHHHHhcCCcCCHHHHH
Confidence 479999999999999999999999998 999876 45533210 11111111 01111
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeE-EEEEEecChHHHHHHHHHhhhcc----------CCC
Q 006920 293 LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQ----------SPD 360 (625)
Q Consensus 293 ~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~v-vfle~~~~~e~i~~R~i~rr~~~----------~pd 360 (625)
.+ +...+.+.+. +|+|+...+..+.+.+..+ .+.+..+ .+|++.|+++.+++|...|+... .|.
T Consensus 66 ~l---v~~~l~~~~~-~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp 141 (206)
T 3sr0_A 66 AL---IEEVFPKHGN-VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPP 141 (206)
T ss_dssp HH---HHHHCCSSSC-EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCC
T ss_pred HH---HHHhhccCCc-eEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCC
Confidence 11 1223343333 5999988888887777766 5555432 45556889999999888775321 010
Q ss_pred CCC---CCCHHHHHHHHHHHHHhhhhccccCCC----CCeeEEeec
Q 006920 361 YAE---EPDFEAGLQDFKNRLANYEKVYEPVDE----GSYIKMIDM 399 (625)
Q Consensus 361 ~sd---~~d~e~~~~~~~~rl~~y~~~fEp~~e----~~~i~~id~ 399 (625)
-.+ ....++-.+.+.+|++.|.+..+|+-+ ....+.||.
T Consensus 142 ~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg 187 (206)
T 3sr0_A 142 PPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDA 187 (206)
T ss_dssp CTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEET
T ss_pred CCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 000 002344567788999999998887632 244556675
No 67
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.96 E-value=8.6e-09 Score=101.42 Aligned_cols=120 Identities=16% Similarity=0.128 Sum_probs=68.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH-HHcCCCCCCcccCCCCHHHHHHH-------HHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR-LKHGVNQSADFFRADNPEGMEAR-------NEVAAL 293 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk-~~~g~~~~~~f~~~~~~~~~~~~-------~~va~~ 293 (625)
+++.|+++|.|||||||+|+.|++++++. +++.|++-+ ...+.... +....+.. ......
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~li~~~~~~~t~~-------g~~i~~~~~~g~~~~~~~~~~ 71 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLA-----HLSTGDMLREAIKNGTKI-------GLEAKSIIESGNFVGDEIVLG 71 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTC--C-------CHHHHHHHHHTCCCCHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCce-----EEehhHHHHHHHHcCCHH-------HHHHHHHHHCCCcCCHHHHHH
Confidence 34689999999999999999999999988 999987543 33221111 01000000 011111
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCC-eEEEEEEecChHHHHHHHHHhh
Q 006920 294 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNC-KIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 294 ~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~-~vvfle~~~~~e~i~~R~i~rr 354 (625)
++...+..+. .+..+|+|+........+.+.++ ...+. +..+|++.|+++.+++|...|+
T Consensus 72 ~i~~~l~~~~-~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 72 LVKEKFDLGV-CVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC 133 (217)
T ss_dssp HHHHHHHTTT-TTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HHHHHHhccc-cCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 2221111111 24456899866665555555544 33332 2245556889888888876553
No 68
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.93 E-value=7.5e-10 Score=108.37 Aligned_cols=160 Identities=19% Similarity=0.199 Sum_probs=91.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCCCcccCCCCHHHHHHH-------HHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAME 296 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~~~f~~~~~~~~~~~~-------~~va~~~l~ 296 (625)
.|+++|.|||||||+|+.|++.+++. +++.|++ |+...+.... .....+.. ..+...++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~ 69 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIP-----HISTGDMFRAAIKNGTEL-------GLKAKSFMDQGNLVPDEVTIGIVH 69 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHHTTCHH-------HHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EeeHHHHHHHHHhcCCHH-------HHHHHHHHHCCCCCCHHHHHHHHH
Confidence 58999999999999999999999988 8999764 5543321100 00000000 011111111
Q ss_pred HHHHHHHc--CCcEEEEecCCCcHHHHHHHHHH-HcCCCeE-EEEEEecChHHHHHHHHHhhhc-----------cCCCC
Q 006920 297 DMISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQ-----------QSPDY 361 (625)
Q Consensus 297 ~~~~~l~~--~g~vvIvDatn~~~~~R~~~~~l-~~~~~~v-vfle~~~~~e~i~~R~i~rr~~-----------~~pd~ 361 (625)
..+.. .+..+|+|+.......+..+.+. .+.+..+ .+|.+.|+.+.+++|...|+.. ..|..
T Consensus 70 ---~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~ 146 (216)
T 3fb4_A 70 ---ERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAV 146 (216)
T ss_dssp ---HHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSS
T ss_pred ---HHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCc
Confidence 22221 24556999987777777777766 4444433 4555688988888887766311 00100
Q ss_pred CCC---------CCHHHHHHHHHHHHHhhhhccccCCCC----CeeEEeec
Q 006920 362 AEE---------PDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 399 (625)
Q Consensus 362 sd~---------~d~e~~~~~~~~rl~~y~~~fEp~~e~----~~i~~id~ 399 (625)
.+. ...++-.+.+.+|+..|....+|+.+- ..++.||.
T Consensus 147 ~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~ 197 (216)
T 3fb4_A 147 EGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDG 197 (216)
T ss_dssp TTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEEC
Confidence 000 012334566778888887776665432 24556665
No 69
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.91 E-value=4.8e-10 Score=109.88 Aligned_cols=165 Identities=15% Similarity=0.179 Sum_probs=91.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCCC----cccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSA----DFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~~----~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
.|+|+|.|||||||+|+.|++.+++. +++.|++ |+...+..... .++....... ......++...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~l 72 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP-----HISTGDMFRAAMKEETPLGLEAKSYIDKGELVP----DEVTIGIVKERL 72 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCC----HHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC----HHHHHHHHHHHH
Confidence 58899999999999999999999988 9999764 54333211000 0000000000 011111111111
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeE-EEEEEecChHHHHHHHHHhhhc-----------cCCCCCCC--
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQ-----------QSPDYAEE-- 364 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~v-vfle~~~~~e~i~~R~i~rr~~-----------~~pd~sd~-- 364 (625)
.... .+..+|+|+.......+..+.+. ...+..+ .+|.+.|+.+++++|...|+.. ..|...+.
T Consensus 73 ~~~~-~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~ 151 (216)
T 3dl0_A 73 GKDD-CERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICD 151 (216)
T ss_dssp TSGG-GTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCT
T ss_pred hccc-ccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccc
Confidence 1111 24556999977777777777766 4445433 4556688998888888776311 00100000
Q ss_pred -------CCHHHHHHHHHHHHHhhhhccccCCCC----CeeEEeec
Q 006920 365 -------PDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 399 (625)
Q Consensus 365 -------~d~e~~~~~~~~rl~~y~~~fEp~~e~----~~i~~id~ 399 (625)
...++-.+.+.+|+..|....+|+.+- ..++.||.
T Consensus 152 ~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~ 197 (216)
T 3dl0_A 152 KDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNG 197 (216)
T ss_dssp TTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 001122456777888887776665432 24556665
No 70
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.88 E-value=3.9e-09 Score=98.85 Aligned_cols=135 Identities=17% Similarity=0.211 Sum_probs=74.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 303 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~ 303 (625)
+.|+++|.|||||||+|+.|++++++. +++.|.+.+...|.... .++...+...++ .+...+...+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~g~~~~-~~~~~~~~~~~~-------~~~~~~l~~l~ 67 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIP-----FYDVDEEVQKREGLSIP-QIFEKKGEAYFR-------KLEFEVLKDLS 67 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCHH-HHHHHSCHHHHH-------HHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC-----EEECcHHHHHHcCCCHH-HHHHHhChHHHH-------HHHHHHHHHHh
Confidence 369999999999999999999999988 99999987766553221 111112222222 11122223344
Q ss_pred cCCcEEEEec--CCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 006920 304 EGGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 381 (625)
Q Consensus 304 ~~g~vvIvDa--tn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~y 381 (625)
..+.+||.|+ .......++.+. +. ..++| +.|+.+.+++|...|+ .+|...+ ..+.+.+.|.++.+.|
T Consensus 68 ~~~~~Vi~~g~~~~~~~~~~~~l~---~~-~~~i~--l~~~~e~~~~R~~~r~--~r~~~~~--~~~~i~~~~~~~~~~~ 137 (168)
T 2pt5_A 68 EKENVVISTGGGLGANEEALNFMK---SR-GTTVF--IDIPFEVFLERCKDSK--ERPLLKR--PLDEIKNLFEERRKIY 137 (168)
T ss_dssp TSSSEEEECCHHHHTCHHHHHHHH---TT-SEEEE--EECCHHHHHHHCBCTT--CCBGGGS--CGGGTHHHHHHHHHHH
T ss_pred ccCCeEEECCCCEeCCHHHHHHHH---cC-CEEEE--EECCHHHHHHHHhCCC--CCCCCcc--hHHHHHHHHHHHHHHH
Confidence 4556645532 223344444332 22 23444 4788888887765442 2343321 2344555555554443
No 71
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.88 E-value=1.8e-08 Score=94.55 Aligned_cols=106 Identities=11% Similarity=0.129 Sum_probs=62.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 304 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~ 304 (625)
+|+++|.|||||||+|+.|++.|++. +++.|.+.+...|..... ++...+. .....+...+...+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~d~~~~~~~g~~~~~-~~~~~~~-------~~~~~~~~~~~~~l~- 69 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYE-----FVDTDIFMQHTSGMTVAD-VVAAEGW-------PGFRRRESEALQAVA- 69 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHHCSCHHH-HHHHHHH-------HHHHHHHHHHHHHHC-
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc-----EEcccHHHHHHhCCCHHH-HHHHcCH-------HHHHHHHHHHHHHhh-
Confidence 69999999999999999999999988 999998877655532211 1110111 111122222233344
Q ss_pred CCcEEEEecCC---CcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHH
Q 006920 305 GGQVGIFDATN---SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNI 351 (625)
Q Consensus 305 ~g~vvIvDatn---~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i 351 (625)
++.+ |++... .....++.+.. .+ .+ |++.|+.+.+++|..
T Consensus 70 ~~~~-vi~~g~~~~~~~~~~~~l~~---~~-~~--i~l~~~~e~~~~R~~ 112 (173)
T 1e6c_A 70 TPNR-VVATGGGMVLLEQNRQFMRA---HG-TV--VYLFAPAEELALRLQ 112 (173)
T ss_dssp CSSE-EEECCTTGGGSHHHHHHHHH---HS-EE--EEEECCHHHHHHHHH
T ss_pred cCCe-EEECCCcEEeCHHHHHHHHc---CC-eE--EEEECCHHHHHHHHh
Confidence 4455 554332 33444544332 12 34 445789888888876
No 72
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.84 E-value=3.1e-09 Score=100.69 Aligned_cols=134 Identities=17% Similarity=0.226 Sum_probs=75.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 304 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~ 304 (625)
.|+++|.|||||||+|+.|++.+++. +++.|.+++...|..... ++...+...++. ....++..+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~-----~~d~d~~~~~~~g~~~~~-~~~~~g~~~~~~-------~~~~~~~~l~~ 72 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV-----FLDSDFLIEQKFNQKVSE-IFEQKRENFFRE-------QEQKMADFFSS 72 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHHHHTSCHHH-HHHHHCHHHHHH-------HHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcccHHHHHHcCCCHHH-HHHHcCHHHHHH-------HHHHHHHHHHc
Confidence 58999999999999999999999988 999999877666644322 111112222211 11112223333
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHhhh
Q 006920 305 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 382 (625)
Q Consensus 305 ~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d~e~~~~~~~~rl~~y~ 382 (625)
.... |+++.......++ +.+.+ .++|| .|+.+.+.+|...+....+|... +.+.+.+.|.+|.+.|.
T Consensus 73 ~~~~-vi~~g~~~~~~~~----l~~~~-~~i~l--~~~~e~~~~R~~~r~~~~r~~~~---~~~~i~~~~~~r~~~y~ 139 (175)
T 1via_A 73 CEKA-CIATGGGFVNVSN----LEKAG-FCIYL--KADFEYLKKRLDKDEISKRPLFY---DEIKAKKLYNERLSKYE 139 (175)
T ss_dssp CCSE-EEECCTTGGGSTT----GGGGC-EEEEE--ECCHHHHTTCCCGGGTTTSCTTC---CHHHHHHHHHHHHHHHH
T ss_pred cCCE-EEECCCCEehhhH----HhcCC-EEEEE--eCCHHHHHHHHhcccCCCCCCcc---cHHHHHHHHHHHHHHHH
Confidence 4444 5554332221122 32222 34454 67887777776544212345433 25556666777766664
No 73
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.83 E-value=1.5e-08 Score=113.69 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=87.8
Q ss_pred cccccCCCCcccchhHHHHHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccC-CcceEEechHHHHHHcCCC
Q 006920 192 DTETKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKYRRLKHGVN 270 (625)
Q Consensus 192 ~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g-~~~~~~~~D~~Rk~~~g~~ 270 (625)
.+......|.|+.-....+..+.+......++.+|+|+|+|||||||+++.|+..++..+ ....+++.|.+++.+.
T Consensus 338 ~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~--- 414 (552)
T 3cr8_A 338 RMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLS--- 414 (552)
T ss_dssp HHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTT---
T ss_pred HHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhc---
Confidence 344555667777755566665655422346788999999999999999999999997443 3455799998876431
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHH
Q 006920 271 QSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIER 349 (625)
Q Consensus 271 ~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R 349 (625)
....|....+...++....+.+. +...+.++|.....+....|+.++++ .+.+ .+++|++.|+.+.+.+|
T Consensus 415 ~~l~f~~~~r~~~~r~i~~v~q~--------l~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R 485 (552)
T 3cr8_A 415 SELGFSKAHRDVNVRRIGFVASE--------ITKNRGIAICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESR 485 (552)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHH--------HHHTTCEEEECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC--------
T ss_pred cccCCCHHHHHHHHHHHHHHHHH--------HHhcCCEEEEecCCccHHHHHHHHHHHHHcC-CEEEEEEcCCHHHHHHh
Confidence 22223221112222222222222 33356776777666667888888888 5555 67788888998777777
Q ss_pred H
Q 006920 350 N 350 (625)
Q Consensus 350 ~ 350 (625)
.
T Consensus 486 ~ 486 (552)
T 3cr8_A 486 D 486 (552)
T ss_dssp -
T ss_pred c
Confidence 3
No 74
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.82 E-value=9.6e-09 Score=104.03 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=75.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHc-CCCCCCcccCCCCHHHHHHHHH-HHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH-GVNQSADFFRADNPEGMEARNE-VAALAMEDMIS 300 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~-g~~~~~~f~~~~~~~~~~~~~~-va~~~l~~~~~ 300 (625)
+..|+++|+|||||||+++.|++.+++. +++.|.+.+... |..... ++...++..++..+. +...+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~-----~~d~d~~~~~~~~g~~i~~-i~~~~ge~~fr~~e~~~l~~l------ 115 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYT-----FFDCDTLIEQAMKGTSVAE-IFEHFGESVFREKETEALKKL------ 115 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHHHSTTSCHHH-HHHHHCHHHHHHHHHHHHHHH------
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCc-----EEeCcHHHHHHhcCccHHH-HHHHhCcHHHHHHHHHHHHHH------
Confidence 3479999999999999999999999998 999998877665 544332 222223333332221 22221
Q ss_pred HHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCC--------HHHHHH
Q 006920 301 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPD--------FEAGLQ 372 (625)
Q Consensus 301 ~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d--------~e~~~~ 372 (625)
+......||.++ .... .+...+.+.+. ..++|| .|+.+++.+|...+....+|...+. + .+.+.+
T Consensus 116 -~~~~~~~Via~G-gG~v-~~~~~~~~l~~-~~vV~L--~a~~e~l~~Rl~~~~~~~Rpl~~~~-~~~d~~~~~~~~l~~ 188 (250)
T 3nwj_A 116 -SLMYHQVVVSTG-GGAV-IRPINWKYMHK-GISIWL--DVPLEALAHRIAAVGTGSRPLLHDD-ESGDTYTAALNRLST 188 (250)
T ss_dssp -HHHCSSEEEECC-GGGG-GSHHHHHHHTT-SEEEEE--ECCHHHHHHHHHC-----------------CHHHHHHHHHH
T ss_pred -HhhcCCcEEecC-CCee-cCHHHHHHHhC-CcEEEE--ECCHHHHHHHHhhcCCCCCCcccCC-CcccchhhHHHHHHH
Confidence 222133434332 2211 11222223222 345555 6788888888764322346666542 2 245667
Q ss_pred HHHHHHHhhhh
Q 006920 373 DFKNRLANYEK 383 (625)
Q Consensus 373 ~~~~rl~~y~~ 383 (625)
.+.+|.+.|..
T Consensus 189 l~~eR~~lY~~ 199 (250)
T 3nwj_A 189 IWDARGEAYTK 199 (250)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 77777777654
No 75
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.81 E-value=8.8e-09 Score=96.73 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=36.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCC
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGV 269 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~ 269 (625)
.+|+++|.|||||||+|+.|+++|++. +++.|.+.+...|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~-----~id~D~~~~~~~g~ 48 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLE-----VLDTDMIISERVGL 48 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHhCC
Confidence 479999999999999999999999998 99999877666554
No 76
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.81 E-value=1.6e-08 Score=96.15 Aligned_cols=123 Identities=18% Similarity=0.219 Sum_probs=67.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHH--cCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLK--HGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 300 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~--~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~ 300 (625)
++|+++|.|||||||+|+.|+++++..|....+++.|++ ++.. .+.......+...... ........+...+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~ 78 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVE---KQKKLQIDAAKGIAE 78 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHH---HHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHH---HHHHHHHHHHHHHHH
Confidence 479999999999999999999999977777778987765 3322 1111110000011111 111222222222333
Q ss_pred HHH-cCCcEEEEecCCCcHHH--------HHHHHHHHcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 301 WMH-EGGQVGIFDATNSSRKR--------RNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 301 ~l~-~~g~vvIvDatn~~~~~--------R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
.+. ..+..||+|........ ++.++.+ . .. .++.+.|+.+++++|++..
T Consensus 79 ~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~-~-~~--~vi~l~~~~~~~~~rr~~~ 136 (194)
T 1nks_A 79 EARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI-N-PS--VIFLLEADPKIILSRQKRD 136 (194)
T ss_dssp HHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH-C-CS--EEEEEECCHHHHHHHHHHC
T ss_pred HhhccCCCEEEECCchhhccccccccCCCHHHHHhc-C-CC--EEEEEeCCHHHHHHHHHhh
Confidence 331 45677799986321111 2333332 1 22 3444578988888887654
No 77
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.80 E-value=5.8e-08 Score=95.99 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=67.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCC-C---cccCCCCHHHHHHHHHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS-A---DFFRADNPEGMEARNEVAALAMEDM 298 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~-~---~f~~~~~~~~~~~~~~va~~~l~~~ 298 (625)
++|+++|.|||||||+|+.|++++++. +++.|++ |+...+.... . .+.... .... ......++
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~-----~i~~dd~~r~~~~~~~~~g~~i~~~~~~g-~~~~---~~~~~~~i--- 68 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLA-----HIESGGIFREHIGGGTELGKKAKEFIDRG-DLVP---DDITIPMV--- 68 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHHHTTTTCHHHHHHHHHHTTT-CCCC---HHHHHHHH---
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCe-----EEchHHHHHHHHHcCCHHHHHHHHHHHcC-CcCc---HHHHHHHH---
Confidence 369999999999999999999999877 8998875 4432221100 0 000000 0000 01111111
Q ss_pred HHHHHc-CCcEEEEecCCCcHHHHHHHHHH-HcCCC-eEEEEEEecChHHHHHHHHHhh
Q 006920 299 ISWMHE-GGQVGIFDATNSSRKRRNMLMKM-AEGNC-KIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 299 ~~~l~~-~g~vvIvDatn~~~~~R~~~~~l-~~~~~-~vvfle~~~~~e~i~~R~i~rr 354 (625)
...+.. .|..+|+|+........+.+.++ ...+. +-.++.+.|+.+.+++|...|.
T Consensus 69 ~~~l~~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 69 LETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp HHHHHHHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred HHHHhcccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 122222 15566999866555556666554 33332 2234556789888888876553
No 78
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.77 E-value=8.2e-08 Score=89.66 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=32.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
+|+++|.|||||||+|+.|++.+++. +++.|.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~-----~i~~d~~~~ 37 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYP-----IIKGSSFEL 37 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCC-----EEECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe-----eecCccccc
Confidence 79999999999999999999999988 899987765
No 79
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.74 E-value=1.1e-08 Score=101.11 Aligned_cols=165 Identities=16% Similarity=0.149 Sum_probs=84.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCC-C---CcccCCCCHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQ-S---ADFFRADNPEGMEARNEVAALA 294 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~-~---~~f~~~~~~~~~~~~~~va~~~ 294 (625)
..++++|+++|.|||||||+|+.|++.+++. +++.|++ |....+... . ..++..... ..+ .....+
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~-~~~---~~~~~~ 74 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHFELK-----HLSSGDLLRDNMLRGTEIGVLAKAFIDQGKL-IPD---DVMTRL 74 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHSSSE-----EEEHHHHHHHHHHHTCHHHHHHHHHHTTTCC-CCH---HHHHHH
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHcCCe-----EEechHHHHHhhhcCChHHHHHHHHHHcCCc-CCH---HHHHHH
Confidence 3456789999999999999999999999988 8998764 433321100 0 000000000 000 000111
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhc---c--------CCCCC
Q 006920 295 MEDMISWMHE-GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ---Q--------SPDYA 362 (625)
Q Consensus 295 l~~~~~~l~~-~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~---~--------~pd~s 362 (625)
+ ...+.+ .+..+|+|+......+.+.+..+. ... ..|++.|+.+.+++|...|+.. . -|...
T Consensus 75 ~---~~~l~~~~~~~~vid~~~~~~~~~~~l~~~~--~~~-~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~ 148 (227)
T 1zd8_A 75 A---LHELKNLTQYSWLLDGFPRTLPQAEALDRAY--QID-TVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTV 148 (227)
T ss_dssp H---HHHHHTCTTSCEEEESCCCSHHHHHHHHTTS--CCC-EEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSST
T ss_pred H---HHHHhcccCCCEEEeCCCCCHHHHHHHHHhc--CCC-EEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcc
Confidence 1 112222 234568999776655443333221 222 3445578988888887655311 0 00000
Q ss_pred CC---------CCHHHHHHHHHHHHHhhhhccccCCCC----CeeEEeec
Q 006920 363 EE---------PDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 399 (625)
Q Consensus 363 d~---------~d~e~~~~~~~~rl~~y~~~fEp~~e~----~~i~~id~ 399 (625)
+. ...++..+.+.+|+..|....+|+-+. ..++.||.
T Consensus 149 ~~~~~~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~ 198 (227)
T 1zd8_A 149 GIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSG 198 (227)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred cccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeC
Confidence 00 012345567888888887765553211 33566775
No 80
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.73 E-value=4.2e-08 Score=93.25 Aligned_cols=43 Identities=23% Similarity=0.317 Sum_probs=35.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRL 265 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~ 265 (625)
+++|+++|.|||||||+|+.|+++++..|++..+++.|++ |+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~ 46 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEV 46 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHH
Confidence 4689999999999999999999999965555568997764 443
No 81
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.73 E-value=8.9e-08 Score=89.90 Aligned_cols=137 Identities=21% Similarity=0.222 Sum_probs=71.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 302 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l 302 (625)
+.+|+++|.|||||||+++.|+..+++. +++.|.+.+...|..... ++...+...++. ....+...+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~-----~id~d~~~~~~~~~~i~~-i~~~~g~~~~~~-------~~~~~l~~l 70 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNME-----FYDSDQEIEKRTGADVGW-VFDLEGEEGFRD-------REEKVINEL 70 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCE-----EEEHHHHHHHHHTSCHHH-HHHHHHHHHHHH-------HHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCC-----EEeccHHHHHHhCcCHHH-HHHHHhHHHHHH-------HHHHHHHHH
Confidence 4579999999999999999999999887 899998766544422110 111001111111 111122223
Q ss_pred HcCCcEEEEec---CCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhccCCCCCCCCC--HHHHHHHHHHH
Q 006920 303 HEGGQVGIFDA---TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPD--FEAGLQDFKNR 377 (625)
Q Consensus 303 ~~~g~vvIvDa---tn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd~~d--~e~~~~~~~~r 377 (625)
.....+ |+.+ .......++.+. ..+. .+++.|+.+++.+|...|. .+|..... + .+.+...+..|
T Consensus 71 ~~~~~~-v~~~~~~~~~~~~~~~~l~---~~~~---~i~l~~~~~~l~~R~~~r~--~r~~~~~~-~~~~~~~~~~~~~r 140 (173)
T 1kag_A 71 TEKQGI-VLATGGGSVKSRETRNRLS---ARGV---VVYLETTIEKQLARTQRDK--KRPLLHVE-TPPREVLEALANER 140 (173)
T ss_dssp HTSSSE-EEECCTTGGGSHHHHHHHH---HHSE---EEECCCCHHHHHSCC--------CCSSSS-CCCHHHHHHHHHHH
T ss_pred HhCCCe-EEECCCeEEecHHHHHHHH---hCCE---EEEEeCCHHHHHHHHhCCC--CCCCCCCC-CchHHHHHHHHHHH
Confidence 333444 4432 122233343333 2232 3445789888888776552 24544433 3 45555666666
Q ss_pred HHhhh
Q 006920 378 LANYE 382 (625)
Q Consensus 378 l~~y~ 382 (625)
.+.|.
T Consensus 141 ~~~~~ 145 (173)
T 1kag_A 141 NPLYE 145 (173)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 82
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.72 E-value=3e-08 Score=96.93 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=78.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHH--HcCCCCCCcccCCCCHHHH--H------------H
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL--KHGVNQSADFFRADNPEGM--E------------A 286 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~--~~g~~~~~~f~~~~~~~~~--~------------~ 286 (625)
..+|.+.|.+||||||+|+.||++|++. ++|.+.++.. ..|++. ..+....+... . .
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~-----~~D~~~~~~~a~~~g~~~--~~~~~~~e~~~~~~~~~~~~~~~~~~~ 78 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIP-----LYSKELLDEVAKDGRYSK--EVLERFDEKPMNFAFIPVPAGGTTISL 78 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCC-----EECHHHHHHTTCC----------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcC-----EECHHHHHHHHHhcCCCH--HHHHHHhhhchhHHHHHhccccccccc
Confidence 4589999999999999999999999999 9995555542 233332 22222222111 1 0
Q ss_pred HHHHHHHHHHHHHHHHH--cCCcEEEEecCCCcHHHHHHHHHHHcC-CCeEEEEEEecChHHHHHHHHHhhhccCCCCCC
Q 006920 287 RNEVAALAMEDMISWMH--EGGQVGIFDATNSSRKRRNMLMKMAEG-NCKIIFLETICNDRDIIERNIRLKIQQSPDYAE 363 (625)
Q Consensus 287 ~~~va~~~l~~~~~~l~--~~g~vvIvDatn~~~~~R~~~~~l~~~-~~~vvfle~~~~~e~i~~R~i~rr~~~~pd~sd 363 (625)
...+. ....+++.-+. +.+.+ |+++....-- +... +.-.+|| .++.+++++|..++..
T Consensus 79 ~~~~~-~~~~~~i~~la~~~~~~~-Vi~Gr~g~~v-------l~~~~~~~~V~L--~A~~e~r~~R~~~~~~-------- 139 (201)
T 3fdi_A 79 EQDIA-IRQFNFIRKKANEEKESF-VIVGRCAEEI-------LSDNPNMISAFI--LGDKDTKTKRVMEREG-------- 139 (201)
T ss_dssp -CHHH-HHHHHHHHHHHHTSCCCE-EEESTTHHHH-------TTTCTTEEEEEE--EECHHHHHHHHHHHHT--------
T ss_pred cHHHH-HHHHHHHHHHHhhcCCCE-EEEECCcchh-------cCCCCCeEEEEE--ECCHHHHHHHHHHHhC--------
Confidence 01111 12233333344 45555 6666543311 1221 2334455 6798888888876521
Q ss_pred CCCHHHH----HHHHHHHHHhhhhccc--cCCCCCeeEEeec
Q 006920 364 EPDFEAG----LQDFKNRLANYEKVYE--PVDEGSYIKMIDM 399 (625)
Q Consensus 364 ~~d~e~~----~~~~~~rl~~y~~~fE--p~~e~~~i~~id~ 399 (625)
. +.+++ .+...+|...|...+. |.....+..+||+
T Consensus 140 ~-~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt 180 (201)
T 3fdi_A 140 V-DEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKI 180 (201)
T ss_dssp C-CHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEE
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEEC
Confidence 1 33333 4444556666655333 3333367888998
No 83
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.71 E-value=6e-08 Score=96.38 Aligned_cols=123 Identities=18% Similarity=0.167 Sum_probs=67.2
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HHHHcCCCCC----CcccCCCCHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFRADNPEGMEARNEVAALA 294 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk~~~g~~~~----~~f~~~~~~~~~~~~~~va~~~ 294 (625)
..+++.|+++|.|||||||+|+.|++++++. +++.|++ |+...+.... ..++...... .......+
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~----~~~~~~~~ 83 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFCVC-----HLATGDMLRAMVASGSELGKKLKATMDAGKLV----SDEMVLEL 83 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCC----CHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCc-----eecHHHHHHHHHHcCChhHHHHHHHHHCCCcC----CHHHHHHH
Confidence 4556789999999999999999999999987 8998765 4432211000 0000000000 00111111
Q ss_pred HHHHHHHHHc--CCcEEEEecCCCcHHHHHHHHHH-HcCC-CeEEEEEEecChHHHHHHHHHhh
Q 006920 295 MEDMISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGN-CKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 295 l~~~~~~l~~--~g~vvIvDatn~~~~~R~~~~~l-~~~~-~~vvfle~~~~~e~i~~R~i~rr 354 (625)
+. ..+.. .+..+|+|+........+.+.++ ...+ ..-.+|++.|+.+.+++|...|+
T Consensus 84 i~---~~l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 144 (233)
T 1ak2_A 84 IE---KNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL 144 (233)
T ss_dssp HH---HHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCE
T ss_pred HH---HHHhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 11 12221 12345899855555555555554 3222 12244555789888888876553
No 84
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.68 E-value=1.9e-07 Score=94.42 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=31.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
.+|+++|.|||||||+|+.|++.+++. +++.|.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~-----~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWP-----VVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCC-----EEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCe-----EEeccHHh
Confidence 379999999999999999999999988 89998763
No 85
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.63 E-value=7.4e-07 Score=88.60 Aligned_cols=161 Identities=12% Similarity=0.090 Sum_probs=83.6
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHH----------------
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGME---------------- 285 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~---------------- 285 (625)
++.+|.+.|.+||||||+|+.||++|++. ++|.|.+++.....+.+...+....+....
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~-----~~d~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~ 87 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIH-----FYDDDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHS 87 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCE-----EECHHHHHHHHHCC--------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCc-----EEcHHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccc
Confidence 46799999999999999999999999999 899887776443322222222111111000
Q ss_pred ---------HHHHHHHHHHHHHHHHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhhhc
Q 006920 286 ---------ARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 356 (625)
Q Consensus 286 ---------~~~~va~~~l~~~~~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr~~ 356 (625)
....+. ....+++.-+.+.+.. |++++...--.+ +.+..-..+-|++.++.+.+++|..++..
T Consensus 88 ~~~~~~~~~~~~~~f-~~~~~~i~~la~~~~~-Vi~Grggg~vl~-----~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~- 159 (223)
T 3hdt_A 88 KPSPNDKLTSPENLF-KFQSEVMRELAESEPC-IFVGRAAGYVLD-----QDEDIERLIRIFVYTDKVKKVQRVMEVDC- 159 (223)
T ss_dssp ----------HHHHH-HHHHHHHHHHHHHSCE-EEESTTHHHHHH-----HCTTCCEEEEEEEECCHHHHHHHHHHHHT-
T ss_pred ccccccccccHHHHH-HHHHHHHHHHHhCCCE-EEEeCCcchhcc-----cccCCCCeEEEEEECCHHHHHHHHHHhcC-
Confidence 001111 1222233333334555 666665542221 10212234445557898888888776532
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhhhccc--cCCCCCeeEEeec
Q 006920 357 QSPDYAEEPDFEAGLQDFKNRLANYEKVYE--PVDEGSYIKMIDM 399 (625)
Q Consensus 357 ~~pd~sd~~d~e~~~~~~~~rl~~y~~~fE--p~~e~~~i~~id~ 399 (625)
.+. . . -.+.+.+...+|...|...+. |.+...+-.+||+
T Consensus 160 -~~~-~-~-a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT 200 (223)
T 3hdt_A 160 -IDE-E-R-AKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINT 200 (223)
T ss_dssp -CCH-H-H-HHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEEC
T ss_pred -CCH-H-H-HHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEEC
Confidence 111 0 0 122344555666666664332 2222367788888
No 86
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.61 E-value=9.9e-07 Score=85.10 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=27.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccC
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 251 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g 251 (625)
++++|+++|.|||||||+|+.|+++++..|
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 468999999999999999999999998876
No 87
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.58 E-value=8e-07 Score=86.13 Aligned_cols=39 Identities=31% Similarity=0.377 Sum_probs=34.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEe
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 258 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~ 258 (625)
+.+|++|+++|.|||||||+|+.|+++|+..+++++.+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 456789999999999999999999999998888887665
No 88
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.58 E-value=7.1e-08 Score=94.41 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=31.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH-HH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RR 264 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~-Rk 264 (625)
.|+++|.|||||||+|+.|++.+++. +++.|++ |+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~-----~i~~d~~~r~ 37 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIP-----QISTGDMLRA 37 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe-----EEeHHHHHHH
Confidence 48999999999999999999999887 8998765 44
No 89
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.55 E-value=1.5e-07 Score=89.20 Aligned_cols=42 Identities=29% Similarity=0.251 Sum_probs=35.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 266 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~ 266 (625)
..++.+|+++|+|||||||+|+.|++.+++. +++.|++.+..
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~-----~~~~d~~~~~~ 49 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSGLK-----YINVGDLAREE 49 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhCCe-----EEEHHHHHhhc
Confidence 3455678999999999999999999999988 89999876544
No 90
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.52 E-value=6.4e-07 Score=85.55 Aligned_cols=117 Identities=12% Similarity=0.085 Sum_probs=64.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 302 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~l 302 (625)
+.+|+++|.|||||||+++.|++.++. ..+++.|.+++..... .+...... .....+...+...+..++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g----~~~i~~d~~~~~~~~~----~~~~~~~~---~~~~~~~~~l~~~~~~~~ 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDN----SAYIEGDIINHMVVGG----YRPPWESD---ELLALTWKNITDLTVNFL 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSS----EEEEEHHHHHTTCCTT----CCCGGGCH---HHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCC----eEEEcccchhhhhccc----cccCccch---hHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999986543 1378888876532110 11111111 111111121111122223
Q ss_pred HcCCcEEEEecCCCcHHHHHHHHHH-H--cCCCeEEEEEEecChHHHHHHHHH
Q 006920 303 HEGGQVGIFDATNSSRKRRNMLMKM-A--EGNCKIIFLETICNDRDIIERNIR 352 (625)
Q Consensus 303 ~~~g~vvIvDatn~~~~~R~~~~~l-~--~~~~~vvfle~~~~~e~i~~R~i~ 352 (625)
. .+..+|+|.+. ....++.++++ . ..+..+.++.+.|+.+.+.+|...
T Consensus 71 ~-~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~ 121 (189)
T 2bdt_A 71 L-AQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDAL 121 (189)
T ss_dssp H-TTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTT
T ss_pred h-cCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHh
Confidence 3 44566899864 44555555555 2 223456666677887777666543
No 91
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.49 E-value=9.4e-07 Score=88.18 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=84.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHHHHcCCCCC----CcccCCCCHHHHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQS----ADFFRADNPEGMEARNEVAALAM 295 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk~~~g~~~~----~~f~~~~~~~~~~~~~~va~~~l 295 (625)
...+-+-++|.|||||||+|+.|++.++.. ++++|+ +|+....-+.. ..+....... -.++...++
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~~~g~~-----~is~gdllR~~~~~~t~lG~~i~~~~~~G~lv----pdei~~~ll 76 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKEKFGIP-----QISTGDMLRAAVKAGTPLGVEAKTYMDEGKLV----PDSLIIGLV 76 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHHHHTCC-----EECHHHHHHHHHHTTCHHHHHHHHHHTTTCCC----CHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHHHhCCC-----eeechHHHHHhccCCChHHHHHHHHHhhcccc----ccHHHHHHH
Confidence 345568899999999999999999999998 999876 45433211000 0000000000 001111222
Q ss_pred HHHHHHHHc--CCcEEEEecCCCcHHHHHHHHHHHcCCC-eEEEEEEecChHHHHHHHHHhhhcc----------C-CCC
Q 006920 296 EDMISWMHE--GGQVGIFDATNSSRKRRNMLMKMAEGNC-KIIFLETICNDRDIIERNIRLKIQQ----------S-PDY 361 (625)
Q Consensus 296 ~~~~~~l~~--~g~vvIvDatn~~~~~R~~~~~l~~~~~-~vvfle~~~~~e~i~~R~i~rr~~~----------~-pd~ 361 (625)
. ..+.+ .....|+|+...+..+-+.+. +.+. .-.+|++.|+++.+++|...|+... . |..
T Consensus 77 ~---~~l~~~~~~~g~ILDGfPRt~~Qa~~L~---~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~ 150 (230)
T 3gmt_A 77 K---ERLKEADCANGYLFDGFPRTIAQADAMK---EAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKV 150 (230)
T ss_dssp H---HHHHSGGGTTCEEEESCCCSHHHHHHHH---HTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSS
T ss_pred H---HHHhCcccCCCeEecCCCCcHHHHHHHH---HhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCc
Confidence 2 22322 123458999655544433333 2222 1234556889999999988875320 0 111
Q ss_pred CC----------CCCHHHHHHHHHHHHHhhhhccccCC
Q 006920 362 AE----------EPDFEAGLQDFKNRLANYEKVYEPVD 389 (625)
Q Consensus 362 sd----------~~d~e~~~~~~~~rl~~y~~~fEp~~ 389 (625)
.+ . ..++-.+.+.+|++.|....+|+-
T Consensus 151 ~~~~d~~g~~L~~-R~DD~~e~i~~Rl~~y~~~t~pl~ 187 (230)
T 3gmt_A 151 EGKDDVTGEPLVQ-RDDDKEETVKKRLDVYEAQTKPLI 187 (230)
T ss_dssp TTBCTTTCCBCBC-CGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCccCcccc-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 10 1 345567788999999988777653
No 92
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.48 E-value=1.3e-07 Score=104.83 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=58.8
Q ss_pred cccccCCCCcccchhHHHHHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcc-c-CCcceEEechH
Q 006920 192 DTETKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-L-GHDTKHFNVGK 261 (625)
Q Consensus 192 ~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~-~-g~~~~~~~~D~ 261 (625)
.+......|+|.....+++..+.+..++.+.+++||++|+|||||||+|++|+++|++ . +..+.++|.|.
T Consensus 364 ~Lr~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 364 RLRVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp HHHHTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred HHhCCCCCCccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 3456778889999999999988887655677899999999999999999999999997 4 35567888875
No 93
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.48 E-value=3.4e-06 Score=80.14 Aligned_cols=35 Identities=31% Similarity=0.309 Sum_probs=27.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
++|+++|.|||||||+|+.|+++++..|.. +++.|
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~--~i~~d 35 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYF--VSLYR 35 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCC--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCe--EEEEe
Confidence 379999999999999999999999433322 55543
No 94
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.45 E-value=7.4e-07 Score=87.52 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=32.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
++++|+++|.|||||||+|+.|++++++. +++.|++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~-----~i~~d~~ 39 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLA-----HISAGDL 39 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCE-----ECCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCc-----eecHHHH
Confidence 46789999999999999999999999987 8888764
No 95
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.44 E-value=2.8e-06 Score=87.15 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=33.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
++++++|+++|.|||||||+|+.|+ .+++. +++.|.+.+
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~-----~id~D~~~~ 110 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAY-----IIDSDHLGH 110 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCE-----EEEHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCc-----EEehhHHHH
Confidence 4568999999999999999999999 57777 899998744
No 96
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.43 E-value=8.1e-07 Score=84.91 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=35.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHH-HcccCCcceEEechHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRY-LRWLGHDTKHFNVGKYRRL 265 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~-L~~~g~~~~~~~~D~~Rk~ 265 (625)
..++.+|+++|.|||||||+|+.|++. +++. +++.|++-+.
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~-----~id~d~~~~~ 48 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELDGFQ-----HLEVGKLVKE 48 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEE-----EEEHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCCCE-----EeeHHHHHHH
Confidence 345678999999999999999999999 7888 9999986554
No 97
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.41 E-value=6e-07 Score=86.95 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=34.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEe
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 258 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~ 258 (625)
+.++++|+++|.|||||||+|+.|+++++..+++++.+.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 456789999999999999999999999998888887664
No 98
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.40 E-value=1.4e-06 Score=84.65 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=35.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 265 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~ 265 (625)
+...++|.++|.+||||||+|+.|++.+++. +++.|.+-+.
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~~-----vid~D~~~~~ 49 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGAH-----VVNVDRIGHE 49 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCE-----EEECcHHHHH
Confidence 4567899999999999999999999999988 9999987443
No 99
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.40 E-value=4e-06 Score=83.38 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=30.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcce
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 255 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~ 255 (625)
..++.+|++.|.|||||||+++.|++.++. |.++.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 557889999999999999999999999987 66553
No 100
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.38 E-value=1.3e-06 Score=87.81 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=36.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc-----CCcceEEechHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL-----GHDTKHFNVGKYR 263 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~-----g~~~~~~~~D~~R 263 (625)
..++.+|.++|.|||||||+|+.|++.|++. ++.+.+++.|++-
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4567899999999999999999999999865 5567789998763
No 101
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.37 E-value=5.9e-07 Score=87.23 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=25.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
+.++.+|+++|.|||||||+++.|++.++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34577899999999999999999999884
No 102
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.37 E-value=8e-07 Score=88.93 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=33.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
.+|++|+++|.|||||||+|+.|++.+++. +++.|.+.+
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~-----~~d~g~~~r 45 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGAR-----YLDTGAMYR 45 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCC-----cccCCcHHH
Confidence 457899999999999999999999999988 899997643
No 103
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.37 E-value=4.1e-06 Score=81.84 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=33.7
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 265 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~ 265 (625)
+++++|+++|.+||||||+|+.|++ ++.. +++.|.+.+.
T Consensus 2 ~~~~~I~i~G~~GSGKST~~~~L~~-lg~~-----~id~D~~~~~ 40 (218)
T 1vht_A 2 SLRYIVALTGGIGSGKSTVANAFAD-LGIN-----VIDADIIARQ 40 (218)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH-TTCE-----EEEHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH-cCCE-----EEEccHHHHH
Confidence 3578999999999999999999998 7777 8999876554
No 104
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.37 E-value=8.6e-06 Score=78.32 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=33.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 265 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~ 265 (625)
+|.++|.+||||||+|+.|++.++.. +++.|.+.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~-----~~d~d~~~~~ 39 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP-----YLSSGLLYRA 39 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc-----eeccchHHHh
Confidence 89999999999999999999999988 9999987654
No 105
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.35 E-value=3e-06 Score=80.86 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=25.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDT 254 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~ 254 (625)
++|+++|.|||||||+|+.|++.|...|..+
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v 31 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKV 31 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-E
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 3799999999999999999999995444444
No 106
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.33 E-value=1.4e-05 Score=80.03 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=32.0
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCc-ceEE
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD-TKHF 257 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~-~~~~ 257 (625)
...++.+|++.|.+||||||+++.|++.|...|+. +..+
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 34567899999999999999999999999988887 5444
No 107
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.30 E-value=1.9e-05 Score=77.78 Aligned_cols=35 Identities=31% Similarity=0.310 Sum_probs=30.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCC-cceEE
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGH-DTKHF 257 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~-~~~~~ 257 (625)
+.+|++.|.+||||||+++.|+++|...|+ .+.+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 578999999999999999999999988887 44433
No 108
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.28 E-value=1.1e-05 Score=78.90 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=33.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
+.+|.++|.|||||||+|+.|++.+++. +++.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~-----~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWH-----LLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC-----cccCcceee
Confidence 4689999999999999999999999988 899887644
No 109
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.26 E-value=2e-06 Score=82.42 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=24.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+|+++|.|||||||+|+.|+++|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 27 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYE 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCc
Confidence 69999999999999999999999875
No 110
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.24 E-value=1.7e-05 Score=78.20 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=32.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEe
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 258 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~ 258 (625)
++++|++.|.+||||||+++.|+++|...|+++....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 5789999999999999999999999998888776553
No 111
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.24 E-value=5.9e-06 Score=82.30 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=29.8
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHccc----CCcceEE
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWL----GHDTKHF 257 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~----g~~~~~~ 257 (625)
.+.++++|++.|.+||||||+++.|+++|... |.++...
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 45678899999999999999999999999876 7776555
No 112
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.23 E-value=4.6e-06 Score=79.94 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=34.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 266 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~ 266 (625)
..++.+|.++|.|||||||+|+.|++. ++. +++.|.+.+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~-----~id~d~~~~~~ 45 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYP-----VLDLDALAARA 45 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCC-----EEEHHHHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCE-----EEcccHHHHHh
Confidence 567899999999999999999999998 777 99999865433
No 113
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.23 E-value=1.5e-05 Score=75.27 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=70.6
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 301 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~~ 301 (625)
++.++.|+|.+||||||+++.+. .+. .+++.|.+|......... .+ . ...+...+.......
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~-----~~~~~d~~~g~~~~~~~~-~~-------~---~~~~~~~~~~~~~~~ 69 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPT-----EVISSDFCRGLMSDDEND-QT-------V---TGAAFDVLHYIVSKR 69 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGG-----GEEEHHHHHHHHCSSTTC-GG-------G---HHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCC-----eEEccHHHHHHhcCcccc-hh-------h---HHHHHHHHHHHHHHH
Confidence 56799999999999999999853 122 378888888755432111 11 0 011111111111222
Q ss_pred HHcCCcEEEEecCCCcHHHHHHHHHH-HcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 302 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 302 l~~~g~vvIvDatn~~~~~R~~~~~l-~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
+. .|..+++|+++.....|.....+ ........++.++.|...+-.++..|
T Consensus 70 ~~-~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 70 LQ-LGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp HH-TTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred Hh-CCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 23 45566999999998777777677 56666777777788876666665544
No 114
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.20 E-value=4e-05 Score=75.33 Aligned_cols=119 Identities=14% Similarity=0.101 Sum_probs=71.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCC----------CcccCCCC-----------
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS----------ADFFRADN----------- 280 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~----------~~f~~~~~----------- 280 (625)
.-..|-++|.+||||||+|+.|++ +++. ++|.|.+-+.+...+.. ..++..++
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~g~~-----vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~v 81 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-RGAS-----LVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALI 81 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-TTCE-----EEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-CCCc-----EEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHH
Confidence 345799999999999999999998 8998 99999876655432211 12222221
Q ss_pred ---HHHHHHHHHHHHHHHH-HHHHHHHc-CCcEEEEecCCCcH-HHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHhh
Q 006920 281 ---PEGMEARNEVAALAME-DMISWMHE-GGQVGIFDATNSSR-KRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 281 ---~~~~~~~~~va~~~l~-~~~~~l~~-~g~vvIvDatn~~~-~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~rr 354 (625)
++..+.++.+..-... .+..++.. ++..+|+|+.-+.. .. +..+ .+ .+++| .||.+..++|.++|.
T Consensus 82 F~d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~---~~~~--~D-~vi~V--~ap~e~r~~Rl~~Rd 153 (210)
T 4i1u_A 82 FSDEDARRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRN---WKAR--CD-RVLVV--DCPVDTQIARVMQRN 153 (210)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHH---HHHH--CS-EEEEE--ECCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCC---cccc--CC-eEEEE--ECCHHHHHHHHHhcC
Confidence 1222333333333332 33344443 34567999977765 32 1111 11 34454 689888888888774
No 115
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.20 E-value=2e-05 Score=76.83 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=33.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
+|++|+++|.|||||||+|+.|++.+++. +++.|.+-+
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~-----~~~~d~~~~ 39 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMI-----YVDTGAMYR 39 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCE-----EEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCc-----eecCChHHH
Confidence 35789999999999999999999999988 999998644
No 116
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.18 E-value=2.3e-05 Score=75.71 Aligned_cols=36 Identities=25% Similarity=0.130 Sum_probs=31.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 265 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~ 265 (625)
.+|.++|.|||||||+++.|++ +++. +++.|.+.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~-----~id~d~~~~~ 38 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVP-----LVDADVVARE 38 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCC-----EEEHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCc-----ccchHHHHHH
Confidence 5799999999999999999988 7777 8999987543
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.17 E-value=6e-06 Score=78.56 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=64.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
-.++.+|+++|.|||||||+++.|+..+. ....+++.|++++....... ..+...... ....+... +....
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~---~g~i~i~~d~~~~~~~~~~~-~~~~~~~~~----~~~~v~~~-l~~~~ 76 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPG---VPKVHFHSDDLWGYIKHGRI-DPWLPQSHQ----QNRMIMQI-AADVA 76 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSS---SCEEEECTTHHHHTCCSSCC-CTTSSSHHH----HHHHHHHH-HHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccC---CCeEEEcccchhhhhhcccc-cCCccchhh----hhHHHHHH-HHHHH
Confidence 34578999999999999999999988632 23457888888664322111 122221111 11111211 11111
Q ss_pred HHHHcCCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHHHHHh
Q 006920 300 SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 353 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R~i~r 353 (625)
..+..+|..+++|..... ..++.+ ...+..+..+.+.++.+.++.|.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~-~~l~~~---~~~~~~~~~ls~~~~~~v~~~R~~~r 126 (191)
T 1zp6_A 77 GRYAKEGYFVILDGVVRP-DWLPAF---TALARPLHYIVLRTTAAEAIERCLDR 126 (191)
T ss_dssp HHHHHTSCEEEECSCCCT-TTTHHH---HTTCSCEEEEEEECCHHHHHHHHHTT
T ss_pred HHHhccCCeEEEeccCcH-HHHHHH---HhcCCCeEEEEecCCHHHHHHHHHhc
Confidence 122334556688875432 122222 21133444566678877777776654
No 118
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.17 E-value=5.5e-05 Score=74.95 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=34.7
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
.++.+|.++|.+||||||+++.|++.|++. +++.|.+.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~-----~~d~d~~~~ 52 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFT-----YLDTGAMYR 52 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCE-----EEEHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCc-----eecCCCeeE
Confidence 456789999999999999999999999988 899998754
No 119
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.09 E-value=7.5e-05 Score=75.04 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=34.4
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
.++.+|.++|.+||||||+++.|+++|++. +++.|.+.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~-----~~d~g~i~r 63 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR-----LLDSGAIYR 63 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE-----EEEHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC-----cCCCCceeh
Confidence 345789999999999999999999999988 889888753
No 120
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.08 E-value=1.9e-05 Score=82.99 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=33.2
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
..++.+|+++|.+||||||+|..||++++.. ++|.|.+
T Consensus 37 ~~~~~lIvI~GPTgsGKTtLa~~LA~~l~~e-----iIs~Ds~ 74 (339)
T 3a8t_A 37 HRKEKLLVLMGATGTGKSRLSIDLAAHFPLE-----VINSDKM 74 (339)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHTTSCEE-----EEECCSS
T ss_pred ccCCceEEEECCCCCCHHHHHHHHHHHCCCc-----EEccccc
Confidence 3456799999999999999999999999877 8998865
No 121
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.05 E-value=8.9e-06 Score=78.39 Aligned_cols=36 Identities=22% Similarity=0.125 Sum_probs=31.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 266 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~ 266 (625)
+|.++|.+||||||+++.|++ +++. +++.|.+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~-----~i~~d~~~~~~ 38 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAY-----VLDADKLIHSF 38 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCE-----EEEHHHHHHGG
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCE-----EEEccHHHHHH
Confidence 699999999999999999999 8777 89999875543
No 122
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.05 E-value=2.1e-06 Score=83.19 Aligned_cols=125 Identities=16% Similarity=0.086 Sum_probs=66.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEe---------chHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN---------VGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALA 294 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~---------~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~ 294 (625)
++|+++|.+||||||+++.|++.++..|..+.++. .+.+|..+.|.... . ........... .+...
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~--~--~~~~~~~~~~~-~~~r~ 75 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGD--L--ASSVYAMATLF-ALDRA 75 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEE--E--EEEHHHHHHHH-HHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccc--c--CCCHhHHHHHH-HHHHh
Confidence 37999999999999999999999986655544332 45566655431000 0 00111111110 01110
Q ss_pred --HHHHHHHHHcCCcEEEEecCCCcHH-H-------------HHHHHHHH----cCCCeEEEEEEecChHHHHHHHHHhh
Q 006920 295 --MEDMISWMHEGGQVGIFDATNSSRK-R-------------RNMLMKMA----EGNCKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 295 --l~~~~~~l~~~g~vvIvDatn~~~~-~-------------R~~~~~l~----~~~~~vvfle~~~~~e~i~~R~i~rr 354 (625)
.+.+...+ ..|.+||+|....... + ++.+..+. ....+-.++.+.|+.+.+++|...|.
T Consensus 76 ~~~~~i~~~l-~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~ 154 (214)
T 1gtv_A 76 GAVHTIQGLC-RGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRA 154 (214)
T ss_dssp EEHHHHHHEE-EEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHH
T ss_pred hhHHHHHHHh-hCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHccc
Confidence 11111222 3567889998765431 1 22233332 11133345566788888888877664
No 123
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.03 E-value=4.4e-05 Score=76.10 Aligned_cols=39 Identities=21% Similarity=0.455 Sum_probs=32.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
..+|.+|+++|.|||||||+++.|+++++.. .++.|++.
T Consensus 24 ~~~~~~i~l~G~~GsGKSTl~k~La~~lg~~-----~~~~G~i~ 62 (246)
T 2bbw_A 24 ASKLLRAVILGPPGSGKGTVCQRIAQNFGLQ-----HLSSGHFL 62 (246)
T ss_dssp --CCCEEEEECCTTSSHHHHHHHHHHHHCCC-----CEEHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCe-----EecHHHHH
Confidence 3457899999999999999999999999877 67776653
No 124
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.92 E-value=0.00014 Score=70.63 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=30.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEE
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 257 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~ 257 (625)
++|++-|.-||||||.++.|+++|...|+++.+.
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4789999999999999999999999888887665
No 125
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.88 E-value=9e-06 Score=78.05 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=24.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
++++|+++|.|||||||+|+.|++++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999999998
No 126
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.86 E-value=0.00091 Score=65.21 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=27.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEE
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 257 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~ 257 (625)
..|++-|..||||||.++.|+++|. .|.++...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 4789999999999999999999996 36665544
No 127
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.81 E-value=0.00053 Score=67.95 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=33.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcc-cCCcceE
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKH 256 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~-~g~~~~~ 256 (625)
..++.+|++.|++||||||+++.|++.|.. .|.++..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 567899999999999999999999999998 8887776
No 128
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.80 E-value=4.8e-05 Score=72.94 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=24.7
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.++.+|.++|.+||||||+++.|+..++
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567899999999999999999998764
No 129
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.79 E-value=4.6e-05 Score=73.66 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=32.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHH-cccCCcceEEechHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYL-RWLGHDTKHFNVGKY 262 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L-~~~g~~~~~~~~D~~ 262 (625)
-..+.+|.++|.|||||||+|+.|++.+ +.. +++.|.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~-----~i~~D~~ 56 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCS-----VISQDDF 56 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEE-----EEEGGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcE-----EEeCCcc
Confidence 4567899999999999999999999987 555 8888865
No 130
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.69 E-value=2.8e-05 Score=74.18 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.+|+++|.+||||||+++.|+..++
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999998875
No 131
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.64 E-value=2e-05 Score=76.80 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=25.0
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.++.+|+++|.+||||||+++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567999999999999999999999874
No 132
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.62 E-value=0.0001 Score=76.98 Aligned_cols=35 Identities=34% Similarity=0.244 Sum_probs=31.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
+.+|+++|.+||||||+|+.|++.+++. +++.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~-----iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCE-----LISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEE-----EEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCc-----EEeccch
Confidence 4589999999999999999999999987 8888865
No 133
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.55 E-value=0.00043 Score=69.57 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=25.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
..++++|++.|.+||||||+++.|+++|.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45678999999999999999999999984
No 134
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.54 E-value=0.00082 Score=65.50 Aligned_cols=124 Identities=10% Similarity=0.044 Sum_probs=64.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH-HHHH---HcCCCCCCcccCC-CCHHHHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRL---KHGVNQSADFFRA-DNPEGMEARNEVAALAM 295 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~-~Rk~---~~g~~~~~~f~~~-~~~~~~~~~~~va~~~l 295 (625)
..+.+|.++|+|||||+|+|+.|.+.++.. ...+++..+ +|+. ..|++....+... ..+..-+........+.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~--~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R 86 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKR 86 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTT--TEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCC--CceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999888632 233677655 4432 2344433221111 12222222233333322
Q ss_pred HH-----HHHHHHc-CCcEEEEecCCCcHHHHHHHHHHHcCCCeEEEEEEecChHHHHHH
Q 006920 296 ED-----MISWMHE-GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 349 (625)
Q Consensus 296 ~~-----~~~~l~~-~g~vvIvDatn~~~~~R~~~~~l~~~~~~vvfle~~~~~e~i~~R 349 (625)
.. +...+.. ...++|||..-...+ -+.+++. .+..++.|.+.++++...+|
T Consensus 87 ~~d~~~~~~~~~~~~~~~~vII~dvR~~~E-v~~fr~~--~g~~~~iirI~as~~~R~~R 143 (202)
T 3ch4_B 87 QADPGFFCRKIVEGISQPIWLVSDTRRVSD-IQWFREA--YGAVTQTVRVVALEQSRQQR 143 (202)
T ss_dssp HHCTTTTHHHHSBTCCCSEEEECCCCSHHH-HHHHHHH--HGGGEEEEEEEECHHHHHHT
T ss_pred hcCchHHHHHHHHhcCCCcEEEeCCCCHHH-HHHHHHh--CCCcEEEEEEECCHHHHHHH
Confidence 21 1111111 234678877655422 2333332 23346667777887777666
No 135
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.39 E-value=0.00024 Score=68.58 Aligned_cols=53 Identities=26% Similarity=0.310 Sum_probs=40.9
Q ss_pred HHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 211 VADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 211 la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
++.........++.+|.++|.+||||||+++.|+..+...+..+.+++.|.+.
T Consensus 10 l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 10 LCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp HHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred HHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 44444322356789999999999999999999999987666777777777653
No 136
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.35 E-value=0.00061 Score=74.16 Aligned_cols=43 Identities=30% Similarity=0.478 Sum_probs=38.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
.+|.+|+++|.+|+||||++..||.++...|.++-+++.|.+|
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 4689999999999999999999999998889999999988653
No 137
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.33 E-value=0.00046 Score=66.00 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=23.8
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
++.+|+++|.|||||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999999877
No 138
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.31 E-value=0.00079 Score=64.79 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=21.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHHc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~ 248 (625)
||++|.||+||||+++.|.+.++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 88999999999999999988763
No 139
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.24 E-value=0.00012 Score=75.32 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=32.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
++.+|.++|.+||||||+|+.|++.++..+..+.+++.|++
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 56789999999999999999999999866666778998875
No 140
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.24 E-value=5.6e-05 Score=71.78 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.8
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.+.+|+++|.+||||||+++.|++.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345899999999999999999998764
No 141
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.20 E-value=0.0015 Score=67.79 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=37.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
.++.+|+++|.+|+||||+++.||..+...|.++.+++.|.+|
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 4678999999999999999999999997778888888887654
No 142
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.20 E-value=0.0014 Score=71.16 Aligned_cols=43 Identities=33% Similarity=0.437 Sum_probs=38.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
.+|.+|+++|.+|+||||++..|+..+...|.++-+++.|.+|
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 4689999999999999999999999998888899899888554
No 143
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.16 E-value=0.00092 Score=70.30 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=31.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
+.+|+++|.+||||||+|+.|++.++.. +++.|.+
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~-----iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGE-----IISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEE-----EEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCc-----eeccccc
Confidence 3689999999999999999999999866 8888865
No 144
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.07 E-value=0.0009 Score=69.57 Aligned_cols=36 Identities=25% Similarity=0.232 Sum_probs=31.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
++.+|+++|.+||||||+|..|++.++.. +++.|.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~-----iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGE-----VISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEE-----EEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccc-----eeecCcc
Confidence 35689999999999999999999999876 8888853
No 145
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.01 E-value=0.00092 Score=69.36 Aligned_cols=37 Identities=32% Similarity=0.287 Sum_probs=32.2
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
...|.+|+++|.+||||||+|..|++.++.. +++.|.
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~~~~~~-----iis~Ds 43 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKILPVE-----LISVDS 43 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHSCEE-----EEECCT
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHhCCCc-----EEeccc
Confidence 3457799999999999999999999999876 888775
No 146
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.96 E-value=0.0066 Score=65.94 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=38.2
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc-CCcceEEechHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKY 262 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~-g~~~~~~~~D~~ 262 (625)
.+|.+|+++|.+|+||||++..||..|... |.++-+++.|.+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 467899999999999999999999999887 999999999854
No 147
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.93 E-value=0.0045 Score=60.87 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=24.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.++.+++++|.+||||||+.+.|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4567999999999999999999998775
No 148
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.87 E-value=0.004 Score=63.80 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=36.7
Q ss_pred HHHHHHhcC-CCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 209 AAVADQMLG-PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 209 ~~la~~~~~-~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
..++..+.. +..+.|..++++|.||+|||++|++||+.++.. ...++...+
T Consensus 21 ~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~---~i~v~~~~l 72 (293)
T 3t15_A 21 VHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGIN---PIMMSAGEL 72 (293)
T ss_dssp HHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCC---CEEEEHHHH
T ss_pred HHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC---EEEEeHHHh
Confidence 344555543 234667889999999999999999999999644 445665444
No 149
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.85 E-value=0.0036 Score=58.74 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=35.0
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc-ccCCcceEEechHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR 264 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~-~~g~~~~~~~~D~~Rk 264 (625)
.++..++++|-||+||||+++.++..+. ..|..+.+++..++..
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~ 80 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF 80 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 3457889999999999999999999885 5566677777765543
No 150
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.85 E-value=0.0044 Score=68.57 Aligned_cols=42 Identities=31% Similarity=0.444 Sum_probs=35.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
.++.+|+++|.||+||||++..|+.++...|.++-+++.|.+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 567899999999999999999999999877888888988754
No 151
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.82 E-value=0.0034 Score=61.72 Aligned_cols=29 Identities=31% Similarity=0.298 Sum_probs=26.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
.++.+|++.|.+||||||+++.|+++|+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35789999999999999999999999986
No 152
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.79 E-value=0.0017 Score=62.80 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=36.4
Q ss_pred HHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 210 AVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 210 ~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+++.+... ...++.+|.++|.+||||||+++.|+..+...|...-.+..|.
T Consensus 10 ~~~~~~~~-~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 10 GVLERLDP-RQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp HHHHHSCT-TCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred HHHHHHHh-cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 44555442 2467899999999999999999999999863333334555553
No 153
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.78 E-value=0.006 Score=63.55 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=37.7
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
.++.+|+++|.+|+||||++..||..+...|.++.+++.|..|
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 5678999999999999999999999998778888888887543
No 154
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.76 E-value=0.0011 Score=71.22 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=30.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+.+|+++|.+||||||+|..|++.++.. +++.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~-----iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGE-----VINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEE-----EEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCe-----EeecCc
Confidence 4589999999999999999999999876 888775
No 155
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.68 E-value=0.0018 Score=66.57 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=34.0
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHHHHHcccC--CcceEE-echHH
Q 006920 219 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHF-NVGKY 262 (625)
Q Consensus 219 ~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g--~~~~~~-~~D~~ 262 (625)
...+|.+|.++|.+||||||+|+.|++.++..| .++..+ ..|.+
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 356789999999999999999999999987432 333444 66653
No 156
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.66 E-value=0.0036 Score=68.89 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=34.4
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
.++.+|.|+|.+||||||+.+.|+..+...+.++.+.+.|.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 332 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence 568899999999999999999999988765666666556644
No 157
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.59 E-value=0.013 Score=60.41 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=35.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+.+|+++|.+|+||||++..|+..+...|.++.+++.|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 789999999999999999999999987788888888884
No 158
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.55 E-value=0.0018 Score=62.38 Aligned_cols=36 Identities=28% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc--ccCCcceEEechH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGK 261 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~--~~g~~~~~~~~D~ 261 (625)
.++.+|.++|.+||||||+++.|+..++ .. +++.|.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~-----~v~~d~ 41 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVA-----LLPMDH 41 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEE-----EEEGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeE-----EEecCc
Confidence 4578999999999999999999999887 43 566554
No 159
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.54 E-value=0.0013 Score=65.09 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=25.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
+|++|++.|.+||||||+++.|+++|+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999999984
No 160
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.52 E-value=0.0013 Score=64.69 Aligned_cols=27 Identities=30% Similarity=0.254 Sum_probs=17.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHH-HHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLT-RYL 247 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La-~~L 247 (625)
..+.+|.++|.+||||||+++.|+ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345689999999999999999999 765
No 161
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.46 E-value=0.011 Score=64.07 Aligned_cols=42 Identities=36% Similarity=0.366 Sum_probs=37.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 263 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~R 263 (625)
+|.+|+++|.+|+||||++..|+..+...|.++.+++.|.+|
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 678999999999999999999999998778888898887543
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.46 E-value=0.009 Score=55.15 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=24.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
.+..++++|.||+||||+++.+++.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3455789999999999999999999854
No 163
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.44 E-value=0.0016 Score=63.24 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=24.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.++.+|+++|.+|+||||+.+.|.+.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4567899999999999999999998865
No 164
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.43 E-value=0.014 Score=59.29 Aligned_cols=31 Identities=35% Similarity=0.508 Sum_probs=26.2
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccC
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG 251 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g 251 (625)
..+.-++++|-||+||||+|+.+++.+...+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLG 95 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4455689999999999999999999996543
No 165
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.40 E-value=0.0079 Score=62.88 Aligned_cols=41 Identities=29% Similarity=0.395 Sum_probs=35.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.+|.+|.++|.+||||||+.+.|+..+...+.++.+...|.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~ 167 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDT 167 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecc
Confidence 56899999999999999999999999876666776766664
No 166
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.39 E-value=0.0038 Score=65.15 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=35.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcc--cCCcceEEechHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 262 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~--~g~~~~~~~~D~~ 262 (625)
..+|.+|.++|.+||||||+++.|+..+.. .+..+.++..|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 577899999999999999999999998873 2345667777764
No 167
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.31 E-value=0.019 Score=60.66 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=37.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEec----hHHHHHHcCCC
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV----GKYRRLKHGVN 270 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~----D~~Rk~~~g~~ 270 (625)
++.++++.|-||+||||+|..++..+...|..+.+++. |..+-...|..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~ 114 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVD 114 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCC
Confidence 35589999999999999999999887666777888887 44443344543
No 168
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.29 E-value=0.003 Score=59.79 Aligned_cols=38 Identities=18% Similarity=0.042 Sum_probs=32.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
..+|+++|.+||||||++.+|++.|...|.++-++..|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 34799999999999999999999998777777777543
No 169
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.20 E-value=0.0048 Score=61.20 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=36.4
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
..++.+++++|.+|+||||++..|+..+. .|.++-+++.|
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D 50 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLD 50 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECC
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 45678999999999999999999999999 88899899877
No 170
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.18 E-value=0.0054 Score=63.32 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=33.4
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHc--ccCCcceEEechH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGK 261 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~--~~g~~~~~~~~D~ 261 (625)
..++.+|.++|.+||||||+++.|+..++ -.+..+.+++.|.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 36678999999999999999999999886 3344455666664
No 171
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.17 E-value=0.015 Score=55.80 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=28.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
++.+++++|-||+||||+++.|+. ..+..+.+++.+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~ 54 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTE 54 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECC
Confidence 456899999999999999999998 345566677654
No 172
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.14 E-value=0.0056 Score=59.23 Aligned_cols=41 Identities=20% Similarity=0.058 Sum_probs=34.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
.+..++++|-||+||||+|+.+++.+...+..+..++.+.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45578899999999999999999999877777778877554
No 173
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.13 E-value=0.0074 Score=55.77 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=23.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
.+..++++|-||+||||+|+.+++.+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445789999999999999999999844
No 174
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.12 E-value=0.024 Score=59.47 Aligned_cols=110 Identities=12% Similarity=0.096 Sum_probs=62.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH----HHHHH----cCCCCCCcccCCCCHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK----YRRLK----HGVNQSADFFRADNPEGMEARNEVAA 292 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~----~Rk~~----~g~~~~~~f~~~~~~~~~~~~~~va~ 292 (625)
.+.-++++.|-||+||||+|..++..+-..|..+-+|+... +...+ .+.+...-....-.........
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~---- 119 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLA---- 119 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHH----
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHH----
Confidence 45579999999999999999999988766677777887642 21111 1111110000001111111111
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCc-HHHHHHHHHH-HcC-CCeEEEEEE
Q 006920 293 LAMEDMISWMHEGGQVGIFDATNSS-RKRRNMLMKM-AEG-NCKIIFLET 339 (625)
Q Consensus 293 ~~l~~~~~~l~~~g~vvIvDatn~~-~~~R~~~~~l-~~~-~~~vvfle~ 339 (625)
.+...+.. ....|.|..+.. ...|..++.+ .++ +..+++|+-
T Consensus 120 ----~a~~~l~~-~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 120 ----KCFDHLSQ-KKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp ----HHHHHHHH-SCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred ----HHHHHHhc-CCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 11222332 345566665544 4578888888 666 788888874
No 175
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.06 E-value=0.017 Score=56.96 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=25.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+.-|+++|-||+||||+|+.+++.++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34558899999999999999999998754
No 176
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.00 E-value=0.068 Score=57.88 Aligned_cols=110 Identities=11% Similarity=0.103 Sum_probs=63.4
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcc-cCCcceEEechH----HHHH----HcCCCCCCcccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGK----YRRL----KHGVNQSADFFRADNPEGMEARNEVA 291 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~-~g~~~~~~~~D~----~Rk~----~~g~~~~~~f~~~~~~~~~~~~~~va 291 (625)
.++.+++++|-||+||||+|..++..... .|.++-+|+... +... ..|.+...-....-..........
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~-- 275 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVD-- 275 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHH--
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHH--
Confidence 34569999999999999999999988654 467777887642 2222 223333211111111221111111
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCc-HHHHHHHHHH-HcCCCeEEEEEE
Q 006920 292 ALAMEDMISWMHEGGQVGIFDATNSS-RKRRNMLMKM-AEGNCKIIFLET 339 (625)
Q Consensus 292 ~~~l~~~~~~l~~~g~vvIvDatn~~-~~~R~~~~~l-~~~~~~vvfle~ 339 (625)
+...+. .....|.|..... .+.+..++.+ .+++..+++|+-
T Consensus 276 ------a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 276 ------VASRLS-EAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp ------HHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred ------HHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 122233 2345455554444 4577788888 678889988864
No 177
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.96 E-value=0.018 Score=57.93 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=24.8
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+.-++++|-||+||||+|+.+++.++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~ 78 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNAT 78 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 34458899999999999999999998654
No 178
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.92 E-value=0.0082 Score=57.21 Aligned_cols=41 Identities=22% Similarity=0.134 Sum_probs=34.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 264 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk 264 (625)
.-++++|-||+||||+|+.++..+...+..+..++...+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 67889999999999999999999977677777777765543
No 179
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.92 E-value=0.0045 Score=64.07 Aligned_cols=41 Identities=32% Similarity=0.415 Sum_probs=33.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.++.+|.++|.+||||||+++.|+..+...+.++.+...|.
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 35789999999999999999999999876666666666553
No 180
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.86 E-value=0.078 Score=57.41 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=31.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc--CCcceEEechHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 262 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~--g~~~~~~~~D~~ 262 (625)
+--++++|-||+||||+|+.++..+... +..+..++...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 4568999999999999999999988533 556666766544
No 181
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.86 E-value=0.0042 Score=63.97 Aligned_cols=42 Identities=29% Similarity=0.253 Sum_probs=36.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcc-cCCcceEEechHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKY 262 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~-~g~~~~~~~~D~~ 262 (625)
.++.+|+++|.+|+||||++..|+..+.. .|.++-+++.|.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 35779999999999999999999999874 6888888888754
No 182
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.83 E-value=0.0022 Score=69.65 Aligned_cols=42 Identities=38% Similarity=0.575 Sum_probs=36.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
.+|.+|+++|.+|+||||++..|+..+...|.++.+++.|.+
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 456799999999999999999999999877888888988854
No 183
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.81 E-value=0.03 Score=58.44 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=25.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
...+..++++|.||+||||+|+.+++.+.
T Consensus 42 ~~~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 42 NEVKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp TCCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 34456899999999999999999999874
No 184
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=95.76 E-value=0.049 Score=56.13 Aligned_cols=110 Identities=12% Similarity=0.053 Sum_probs=68.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
...+++|++-|+-||||+|..+.|.+.|.-.|.++..+..-...+.. +. .+....
T Consensus 83 ~~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~---------------------~~----yl~R~~ 137 (304)
T 3czq_A 83 TGKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERG---------------------QW----YFQRYV 137 (304)
T ss_dssp HCCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHT---------------------SC----TTHHHH
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHh---------------------ch----HHHHHH
Confidence 35699999999999999999999999998777766655321111110 00 011112
Q ss_pred HHHHcCCcEEEEecCCCcHH-------------HHHHHHHH-------HcCCCeEEEEEEecChHHHHHHHHHhh
Q 006920 300 SWMHEGGQVGIFDATNSSRK-------------RRNMLMKM-------AEGNCKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~-------------~R~~~~~l-------~~~~~~vvfle~~~~~e~i~~R~i~rr 354 (625)
..|-..|.+||+|-...... ....+..+ ...|++++-+.++++.++-.+|...|.
T Consensus 138 ~~LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~ 212 (304)
T 3czq_A 138 ATFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRR 212 (304)
T ss_dssp TTCCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHH
T ss_pred HhcccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhh
Confidence 22334688889986653321 11222222 335777777777889888877765553
No 185
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.74 E-value=0.0032 Score=66.49 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=25.9
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.....|+++|.||+||||+++.|++.+++.
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 334568899999999999999999999865
No 186
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.73 E-value=0.053 Score=51.10 Aligned_cols=25 Identities=40% Similarity=0.428 Sum_probs=22.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
++++|-||+||||+++.+++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcc
Confidence 8999999999999999999987544
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.72 E-value=0.057 Score=55.69 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=25.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+.-|+|+|-||+|||++|++++..++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~ 78 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANST 78 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCC
Confidence 35579999999999999999999998755
No 188
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.71 E-value=0.041 Score=57.85 Aligned_cols=39 Identities=21% Similarity=0.155 Sum_probs=31.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
++.++.+.|-|||||||+|..++..+...|..+.+++.+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 456899999999999999999998876566677777654
No 189
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.71 E-value=0.024 Score=58.32 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=31.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
+.-++++|-||+||||+|+.++..+...+.+...++...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 3458899999999999999999998654566667776544
No 190
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.71 E-value=0.043 Score=56.99 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=24.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
..+..++++|.||+||||+++.+++.+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4456789999999999999999999884
No 191
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.70 E-value=0.0058 Score=63.13 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=33.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.++.+|.++|.+||||||+++.|+..+...+.++.+...|.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 138 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 46789999999999999999999999875555555555543
No 192
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.024 Score=61.33 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=25.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.|.=|+|.|.||+|||++|+++|..++..
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34568999999999999999999999876
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.68 E-value=0.012 Score=62.06 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=36.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
..++.+|+++|.||+||||++..|+..+...|.++-+++.|-
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 456789999999999999999999999877788888888873
No 194
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.025 Score=61.38 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=25.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.|.=|+|.|.||+|||++|++||..+++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45568999999999999999999999876
No 195
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.64 E-value=0.081 Score=49.99 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=32.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.+.+..+-.|+||||+|..||..|...|.++-++|.|
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3445558889999999999999999899999999987
No 196
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.022 Score=61.75 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=26.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.|.=|+|.|.||+|||++|+++|..+++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 45568999999999999999999999876
No 197
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.59 E-value=0.0066 Score=64.28 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=33.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.++.+|.|+|.+||||||+++.|+..+...+.++.+...|.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 46889999999999999999999999875555665655553
No 198
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.024 Score=60.76 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=25.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
|.=|+|.|.||+|||.+|+++|..+++.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 3448999999999999999999999877
No 199
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.50 E-value=0.0082 Score=55.21 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=31.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
....++++|-+|+||||+++.++..+...|.++..++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 445788999999999999999999886556666666553
No 200
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.45 E-value=0.095 Score=55.49 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=31.8
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
++.++++.|-||+||||+|..++......|..+.+|+.+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 345788899999999999999998876566777788765
No 201
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.44 E-value=0.011 Score=58.64 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=26.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.++.+|.++|-+||||||+++.|+..++..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 456899999999999999999999988743
No 202
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.41 E-value=0.11 Score=53.53 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=32.7
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.++.+++++|-||+||||+|..++......|.++-+|+..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 4567999999999999999999998776556667777754
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.38 E-value=0.034 Score=56.23 Aligned_cols=29 Identities=24% Similarity=0.293 Sum_probs=25.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+.-++++|-||+||||+|+.+++.++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 35578999999999999999999998654
No 204
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.032 Score=60.85 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=26.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..|.=|+|.|.||+|||++|+++|..++..
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 345568999999999999999999999876
No 205
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.27 E-value=0.032 Score=58.13 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=25.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEec
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 259 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~ 259 (625)
.++++.|.||+||||+|.+++.. .|.++.+++.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 46789999999999999999987 3334445554
No 206
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.24 E-value=0.042 Score=58.00 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=32.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
++.++.+.|-|||||||++..++..+...|..+.+++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 457899999999999999999999887666667677654
No 207
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.23 E-value=0.015 Score=55.14 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=28.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEe
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 258 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~ 258 (625)
.+|+++|.+||||||+.+.|...+...|.++-.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 47899999999999999999998876665555554
No 208
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.20 E-value=0.09 Score=57.08 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=60.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcc-cCCcceEEech----HHHHHH----cCCCCCCcccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVG----KYRRLK----HGVNQSADFFRADNPEGMEARNEVA 291 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~-~g~~~~~~~~D----~~Rk~~----~g~~~~~~f~~~~~~~~~~~~~~va 291 (625)
.++.+++++|-||+||||++..++..+.. .|..+.+|+.. .+.+.+ .|.+...-....-.......
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~----- 275 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGK----- 275 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHH-----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHH-----
Confidence 34568999999999999999999998754 46677787754 222221 22221100000011111111
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCc-HHHHHHHHHH-HcCCCeEEEEE
Q 006920 292 ALAMEDMISWMHEGGQVGIFDATNSS-RKRRNMLMKM-AEGNCKIIFLE 338 (625)
Q Consensus 292 ~~~l~~~~~~l~~~g~vvIvDatn~~-~~~R~~~~~l-~~~~~~vvfle 338 (625)
+..+...+. .....|.|..... .+.+..++.+ .+++..+++|+
T Consensus 276 ---~~~a~~~l~-~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID 320 (454)
T 2r6a_A 276 ---LTMAMGSLS-NAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVID 320 (454)
T ss_dssp ---HHHHHHHHH-SSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred ---HHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 111222233 2345455544333 4567777777 56788888886
No 209
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.15 E-value=0.017 Score=59.28 Aligned_cols=40 Identities=35% Similarity=0.360 Sum_probs=35.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
++.+|.++|.+|+||||+++.|+..+...|.++.+++.|.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 6788999999999999999999999987788888888764
No 210
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.15 E-value=0.011 Score=57.53 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=27.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.+..|+++|.+|+||||+|..|+++.. . +++.|
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~-----iIsdD 65 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-R-----LIADD 65 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-E-----EEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-e-----EEecc
Confidence 456799999999999999999998865 3 55555
No 211
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.045 Score=59.12 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=26.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.|.=|+|.|.||+|||.+|+++|..++..
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~ 243 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSAT 243 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCC
Confidence 34569999999999999999999999876
No 212
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.13 E-value=0.048 Score=57.21 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=25.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+.-|+++|-||+||||+|+++++.++..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 35568999999999999999999998654
No 213
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.04 E-value=0.017 Score=57.31 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.-|+++|.||+||||+|+.|+..++..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~ 72 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVP 72 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCC
Confidence 348899999999999999999988654
No 214
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.02 E-value=0.043 Score=56.87 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
.+.-|+|+|.||+|||++|++++..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34678899999999999999999998
No 215
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.01 E-value=0.017 Score=55.56 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=30.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
++.+++++|-|||||||+++.|+..+...+..+.+++.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 346889999999999999999997765445566666654
No 216
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.99 E-value=0.011 Score=56.68 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
+.+++++|.+||||||+.+.|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45799999999999999999998763
No 217
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=94.98 E-value=0.018 Score=57.57 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=27.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
++|.++|.+||||||+|+.|+++++.. ++..+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~-----~~~~~ 33 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAV-----KYQLA 33 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEE-----ECCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCe-----EEecC
Confidence 579999999999999999999988766 56544
No 218
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.94 E-value=0.063 Score=58.32 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=62.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH----HHHHH----cCCCCCCcccCC--CCHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK----YRRLK----HGVNQSADFFRA--DNPEGMEARNEV 290 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~----~Rk~~----~g~~~~~~f~~~--~~~~~~~~~~~v 290 (625)
.++.+++++|-||+||||+|-.++...-..|.++-+|+... +...+ .|.+...-.... -.......
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~---- 270 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGK---- 270 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHH----
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHH----
Confidence 45679999999999999999999988755577787887642 22211 122110000000 00000011
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCc-HHHHHHHHHH-HcCCCe--EEEEEE
Q 006920 291 AALAMEDMISWMHEGGQVGIFDATNSS-RKRRNMLMKM-AEGNCK--IIFLET 339 (625)
Q Consensus 291 a~~~l~~~~~~l~~~g~vvIvDatn~~-~~~R~~~~~l-~~~~~~--vvfle~ 339 (625)
+..+...+. .....|.|..... .+.+..++.+ .+++.. +++|+-
T Consensus 271 ----l~~a~~~l~-~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 271 ----LSMAIGEIS-NSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp ----HHHHHHHHH-TSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred ----HHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 111222233 3455455554444 4578888888 677888 888874
No 219
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.93 E-value=0.038 Score=58.01 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+.-|+|+|-||+|||++|++++..++..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~ 111 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANST 111 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3457889999999999999999998754
No 220
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.92 E-value=0.014 Score=63.35 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=25.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
|.-|+|+|.||+||||+|+.||+.++..
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4458999999999999999999999876
No 221
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.91 E-value=0.017 Score=55.90 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=28.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHc-----ccC-CcceEEechH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLR-----WLG-HDTKHFNVGK 261 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~-----~~g-~~~~~~~~D~ 261 (625)
+++++++|.||||||++|..+...+- ..| ....+.+.|.
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~g 49 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKG 49 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTT
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCC
Confidence 56899999999999999988765542 345 4444555443
No 222
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.85 E-value=0.018 Score=59.66 Aligned_cols=41 Identities=22% Similarity=0.104 Sum_probs=31.2
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcc-cC-CcceEEech
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LG-HDTKHFNVG 260 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~-~g-~~~~~~~~D 260 (625)
..++.+|.++|.+||||||+++.|+..+.. .| ..+-++..|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 467899999999999999999999998853 23 233345444
No 223
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.84 E-value=0.02 Score=54.47 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=27.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEE
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 257 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~ 257 (625)
+.+++++|.||+||||++.+++..+...|.++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45899999999999999988887775555565554
No 224
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.84 E-value=0.11 Score=53.88 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=31.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc------CCcceEEechH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL------GHDTKHFNVGK 261 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~------g~~~~~~~~D~ 261 (625)
.+.+++++|-||+||||+|..++...... +..+.+++.+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45689999999999999999999875322 55666777653
No 225
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.81 E-value=0.025 Score=57.40 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=29.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
..++++|-||+||||+|+.|++.+...+.....++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 4799999999999999999999986544445556543
No 226
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.80 E-value=0.018 Score=59.00 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=25.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+.-|+++|-||+||||+|+.|+..++..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~ 76 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQAN 76 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCE
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 45568999999999999999999998644
No 227
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.78 E-value=0.029 Score=55.48 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=36.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.++.+-|++.|-||+||||++-.++..+...|.++.+++.|.
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 345677999999999999999999999988899998888863
No 228
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=94.72 E-value=0.075 Score=54.24 Aligned_cols=109 Identities=15% Similarity=0.142 Sum_probs=67.7
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 300 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~~ 300 (625)
..|+||++-|+-||||.++.+.|.+.|.-.|.++.-+..-..++..+ . .+.....
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~~~-------------~------------ylwR~~~ 127 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEKSH-------------D------------FLWRIEK 127 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHHTS-------------C------------TTHHHHT
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhhcC-------------C------------HHHHHHH
Confidence 47999999999999999999999999987766665553221111110 0 0111122
Q ss_pred HHHcCCcEEEEecCCCcHHH-------------HHHH---HH---H-HcCCCeEEEEEEecChHHHHHHHHHhh
Q 006920 301 WMHEGGQVGIFDATNSSRKR-------------RNML---MK---M-AEGNCKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 301 ~l~~~g~vvIvDatn~~~~~-------------R~~~---~~---l-~~~~~~vvfle~~~~~e~i~~R~i~rr 354 (625)
.|-..|.++|+|-+.-.+.. ...+ .. + ...|+.++=+.++++.++-.+|..+|.
T Consensus 128 ~lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~ 201 (289)
T 3rhf_A 128 QVPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARL 201 (289)
T ss_dssp TCCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHH
T ss_pred hCCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHh
Confidence 23356888888876544311 1111 11 2 467877766677888877777766654
No 229
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.69 E-value=0.14 Score=53.07 Aligned_cols=29 Identities=7% Similarity=-0.041 Sum_probs=25.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
..+|-.++++|.||+|||++++.+++.|.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45667789999999999999999999995
No 230
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.65 E-value=0.1 Score=54.21 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=27.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc-CCcceEEe
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFN 258 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~-g~~~~~~~ 258 (625)
.++++|.||+||||+++.+++.+... +..+..++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 78899999999999999999998654 34444555
No 231
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.65 E-value=0.09 Score=57.15 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=24.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.-++++|-||+||||+|+.|++.++..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 468999999999999999999998654
No 232
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.62 E-value=0.026 Score=54.96 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=31.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
++.+++++|-||+||||+|.+++..+-..+..+.+++.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 456899999999999999999988765456667777665
No 233
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.60 E-value=0.19 Score=52.50 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=31.4
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcc------cCCcceEEechH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRW------LGHDTKHFNVGK 261 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~------~g~~~~~~~~D~ 261 (625)
.++.+++++|-|||||||+|..++..... .+..+.+++.+.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45679999999999999999999987321 355666776543
No 234
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.59 E-value=0.031 Score=55.98 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=26.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
...+.-++++|-||+|||++|+.+++.++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~ 91 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFP 91 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCS
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4556789999999999999999999997654
No 235
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.59 E-value=0.032 Score=57.53 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=36.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHc-ccCCcceEEechHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRRLK 266 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~-~~g~~~~~~~~D~~Rk~~ 266 (625)
+.-++++|-||+|||++|++|+..+. ..|.++.+++...+...+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l 196 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV 196 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence 45688999999999999999999988 778888888876654433
No 236
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.45 E-value=0.023 Score=54.21 Aligned_cols=28 Identities=32% Similarity=0.286 Sum_probs=24.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+..++++|.||+||||+++.+++.+...
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4588999999999999999999988653
No 237
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP: c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A* 2l3h_A 2l77_A 2l79_A
Probab=94.44 E-value=0.089 Score=54.68 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=48.2
Q ss_pred EEEeccccccCCCCCC---c------CCCCCCCHHHHHHHHHHHHHHHHHhcCCC-------CCEEEEcCcHHHHHHHHH
Q 006920 434 ILLTRHGESRDNVRGR---I------GGDTILSDAGEIYAKKLANFVEKRLKSER-------AASIWTSTLQRTILTASP 497 (625)
Q Consensus 434 I~LVRHGes~~n~~~~---~------~gD~pLTe~G~~QA~~l~~~L~~~l~~~~-------~~~I~sSpl~Ra~qTA~~ 497 (625)
.+|.|||...-..... + .+...||+.|.+|...+|++|++++.+.= .-.|++|...||++||+.
T Consensus 7 ~vl~RHG~R~P~~~~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~ll~~~~~~~~v~vrst~~~Rt~~SA~~ 86 (354)
T 1nd6_A 7 TLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMT 86 (354)
T ss_dssp EEEEECCCBCCSCCCTTCSCCGGGSTTCTTCBCHHHHHHHHHHHHHHHHHTTTTTCSSCCGGGEEEEEESCHHHHHHHHH
T ss_pred EEEecCCCCCCccccCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhccccCcCeEEEEECCchHHHHHHHH
Confidence 4678999875432110 0 11357999999999999999998865321 135889999999999999
Q ss_pred h
Q 006920 498 I 498 (625)
Q Consensus 498 i 498 (625)
+
T Consensus 87 f 87 (354)
T 1nd6_A 87 N 87 (354)
T ss_dssp H
T ss_pred H
Confidence 8
No 238
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.43 E-value=0.024 Score=51.35 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=25.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcccCCcceEEec
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 259 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~ 259 (625)
|++.|-||+|||++|+.|++.....+.... ++.
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~ 59 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRE 59 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEE-EEC
Confidence 789999999999999999987654444444 543
No 239
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.42 E-value=0.16 Score=51.48 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=22.2
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~ 249 (625)
++++|.||+||||+|+.+++.+..
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999999753
No 240
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.42 E-value=0.024 Score=53.75 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.+.++|-+||||||+.+.|+..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999886
No 241
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.42 E-value=0.012 Score=53.09 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.0
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~ 246 (625)
|+++|.+|+||||+..+|...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999998754
No 242
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=94.41 E-value=0.19 Score=55.30 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=71.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
...|++|++-|.-||||+|..+.|.+.|.-.|.++..+..-...+..+ .|+ ....
T Consensus 297 ~~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~~~------~yl-------------------~R~~ 351 (500)
T 3czp_A 297 RQHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERAQ------PYL-------------------WRFW 351 (500)
T ss_dssp GGCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHHTS------CTT-------------------HHHH
T ss_pred CCCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhhcc------hHH-------------------HHHH
Confidence 568999999999999999999999999988877776664332222110 011 1111
Q ss_pred HHHHcCCcEEEEecCCCcHH-------------HHHHHHH-------HHcCCCeEEEEEEecChHHHHHHHHHhhh
Q 006920 300 SWMHEGGQVGIFDATNSSRK-------------RRNMLMK-------MAEGNCKIIFLETICNDRDIIERNIRLKI 355 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~-------------~R~~~~~-------l~~~~~~vvfle~~~~~e~i~~R~i~rr~ 355 (625)
..+-..|.++|+|-+..... ....+.. +...|+.++-+.++++.++-.+|...|..
T Consensus 352 ~~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~ 427 (500)
T 3czp_A 352 RHIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREK 427 (500)
T ss_dssp TTCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred HhCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhc
Confidence 11334688889987654321 1112222 24568888777788898887777766643
No 243
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.41 E-value=0.025 Score=59.34 Aligned_cols=29 Identities=34% Similarity=0.442 Sum_probs=25.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+.-|+|+|-||+|||++|+.|++.++..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~ 78 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVP 78 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34568899999999999999999998755
No 244
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.39 E-value=0.19 Score=53.83 Aligned_cols=39 Identities=13% Similarity=-0.049 Sum_probs=28.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcc------cCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRW------LGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~------~g~~~~~~~~D 260 (625)
+..++.++|-|||||||++..|+-..-. .+..+.+|+..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 4568999999999999999988744321 23445566654
No 245
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.29 E-value=0.078 Score=56.18 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+.-|+|+|-||+|||++|+.+++.++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 4568999999999999999999998755
No 246
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.28 E-value=0.014 Score=57.26 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=24.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
..++.+|.+.|..||||||+++.|+..
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 466789999999999999999999876
No 247
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.28 E-value=0.046 Score=55.24 Aligned_cols=41 Identities=24% Similarity=0.191 Sum_probs=33.7
Q ss_pred CCcEEEEEE-ccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 221 HRHLAIVLV-GLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 221 ~~p~lIvl~-GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.++.+|+++ +-+|.||||+|..||..+...|.++-++|.|-
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 344455555 56999999999999999988899999999983
No 248
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.25 E-value=0.028 Score=56.78 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+.-++++|-||+|||++|+.+++.++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~ 77 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAP 77 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4458899999999999999999998643
No 249
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.22 E-value=0.038 Score=57.77 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=34.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
..++.+|.++|.||+||||+...|+..+...|.++-+++.|-
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 456788899999999999999999998876677777777653
No 250
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.20 E-value=0.04 Score=56.24 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=34.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
..++.+|.++|-.|+||||+|..||..|...|.++-++|.|
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34456666669999999999999999999889999999998
No 251
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.19 E-value=0.037 Score=56.16 Aligned_cols=40 Identities=10% Similarity=-0.031 Sum_probs=31.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc-CCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~-g~~~~~~~~D 260 (625)
.++.+++++|-||+||||+++.|+..+... |..+.+++.+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 456689999999999999999999887543 5566666543
No 252
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.19 E-value=0.12 Score=52.14 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
.|. ++++|.||+||||+|+.+++.+..
T Consensus 42 ~~~-~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 42 MPH-MIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CCC-EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred CCe-EEEECcCCCCHHHHHHHHHHHhcC
Confidence 344 899999999999999999999753
No 253
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.19 E-value=0.046 Score=57.38 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=32.0
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.....+|.++|.||+||||+-..|...+...+.++-++..|
T Consensus 71 ~~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d 111 (349)
T 2www_A 71 KPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD 111 (349)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence 34478999999999999999999998876555555566544
No 254
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.17 E-value=0.048 Score=52.28 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=24.4
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.+...|+++|.+|+||||+...|+..+.
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3456899999999999999999998874
No 255
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.12 E-value=0.055 Score=52.00 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=33.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEe
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 258 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~ 258 (625)
..+..+++++|-|||||||.+-.++..+...|.++.++.
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 345689999999999999999999999877778888874
No 256
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.10 E-value=0.026 Score=57.24 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=22.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~ 249 (625)
++|+|.||+||||+++.|+..++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Confidence 899999999999999999998764
No 257
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.08 E-value=0.045 Score=53.96 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=32.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEe
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 258 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~ 258 (625)
..+..+++++|-||+||||.+..++..+...|.++.++.
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 455789999999999999999999999877777887773
No 258
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.08 E-value=0.029 Score=59.02 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=24.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+.-|+++|.||+||||+|+.|++.++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3458899999999999999999998654
No 259
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.06 E-value=0.088 Score=57.82 Aligned_cols=40 Identities=5% Similarity=-0.152 Sum_probs=33.9
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc-CCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~-g~~~~~~~~D 260 (625)
.+..++++.|-||+||||+|..++...-.. |.++-+|+.+
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 456789999999999999999999987654 7788888765
No 260
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=94.03 E-value=0.13 Score=56.77 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=67.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 299 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~Rk~~~g~~~~~~f~~~~~~~~~~~~~~va~~~l~~~~ 299 (625)
...+++|++-|+-||||+|..+.|.+.|.-.|.++..+..-..++..+ .| +....
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~------~y-------------------l~R~~ 94 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELER------PP-------------------QWRFW 94 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTS------CT-------------------THHHH
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccC------Ch-------------------hhhHH
Confidence 467999999999999999999999999988777766664322222110 01 11111
Q ss_pred HHHHcCCcEEEEecCCCcHH-------------HHHHHHH-------HHcCCCeEEEEEEecChHHHHHHHHHhh
Q 006920 300 SWMHEGGQVGIFDATNSSRK-------------RRNMLMK-------MAEGNCKIIFLETICNDRDIIERNIRLK 354 (625)
Q Consensus 300 ~~l~~~g~vvIvDatn~~~~-------------~R~~~~~-------l~~~~~~vvfle~~~~~e~i~~R~i~rr 354 (625)
..+-..|.++|+|-...... ....+.. +...|+.++-+.++++.++-.+|...|.
T Consensus 95 ~~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~ 169 (500)
T 3czp_A 95 RRLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALE 169 (500)
T ss_dssp HHCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC----
T ss_pred HhCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHh
Confidence 22334688888886643221 1111221 2467888877788889877777766553
No 261
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.03 E-value=0.048 Score=57.22 Aligned_cols=42 Identities=21% Similarity=0.133 Sum_probs=38.0
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
...+.++++.|-.|.||||+|..||..+-..|.++-++|.|-
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 456788999999999999999999999988899999999985
No 262
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.01 E-value=0.065 Score=53.42 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=39.5
Q ss_pred HHHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 209 AAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 209 ~~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
++.|.++. ...+.+.+..|-.|+||||+|..||..|...|.++-++|.|-
T Consensus 8 ~~~a~~l~---~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 57 (262)
T 2ph1_A 8 EEIKERLG---KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADF 57 (262)
T ss_dssp HHHHHHHT---TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred hhhhhhhc---cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34455554 334566677788999999999999999988899999999884
No 263
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.94 E-value=0.029 Score=55.47 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~ 248 (625)
++++|-||+||||+++.|+..++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999876
No 264
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.94 E-value=0.031 Score=53.77 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=24.2
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.++.++.++|-+||||||+.+.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4467899999999999999999998775
No 265
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.93 E-value=0.025 Score=55.09 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=23.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
++.++.++|.+||||||+.+.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45679999999999999999999876
No 266
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.92 E-value=0.052 Score=56.24 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=36.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+.++++.|-.|.||||+|..||..+...|.++-++|.|-
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 588999999999999999999999988899999999984
No 267
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.87 E-value=0.054 Score=63.06 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=26.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..|.=|+|.|.||+|||++|+++|..++..
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 456779999999999999999999988765
No 268
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.84 E-value=0.055 Score=56.58 Aligned_cols=39 Identities=21% Similarity=0.102 Sum_probs=36.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.+.++++.|-.|.||||+|..||..+...|.++-++|.|
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 456889999999999999999999999889999999998
No 269
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.81 E-value=0.094 Score=53.49 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=35.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
...+.|.+..+-+|.||||+|..||..|...|.++-++|.|-
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 131 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDM 131 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccC
Confidence 344566666678999999999999999998899999999884
No 270
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.81 E-value=0.052 Score=56.47 Aligned_cols=40 Identities=18% Similarity=0.074 Sum_probs=36.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.+.++++.|-.|.||||+|..||..+...|.++-++|.|-
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~ 57 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP 57 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3568889999999999999999999998899999999983
No 271
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.75 E-value=0.032 Score=57.95 Aligned_cols=28 Identities=29% Similarity=0.243 Sum_probs=24.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+..++++|.||+||||+++.|+..++..
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3458899999999999999999998653
No 272
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.74 E-value=0.047 Score=53.21 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=27.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc-ccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~-~~g~~~~~~~~D 260 (625)
++.++.++|-+||||||+++.|+...- ..+..+.+++.+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 456899999999999999999985322 233344455443
No 273
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.69 E-value=0.055 Score=56.28 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=24.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
+..++++|-||+|||++|+.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 467899999999999999999999974
No 274
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.68 E-value=0.17 Score=55.44 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=23.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
|+|+|.||+||||+|+.++..++..
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC
Confidence 8899999999999999999988755
No 275
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.66 E-value=0.023 Score=56.53 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=23.0
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
++++|-||+||||+|+.|++.++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC
Confidence 7899999999999999999998755
No 276
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.64 E-value=0.032 Score=53.27 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=24.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEec
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 259 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~ 259 (625)
+|+++|-+||||||+|.+|+.. |.+..++.+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT 31 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIAT 31 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEEC
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEec
Confidence 4789999999999999999865 344555654
No 277
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.58 E-value=0.045 Score=54.46 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=28.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
-|+++|-||+|||++|+.|++.+...+.....++..
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~ 66 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence 477899999999999999999876544555566643
No 278
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.53 E-value=0.83 Score=47.73 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=24.4
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
....++.++|-|||||||+++.|+...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999876
No 279
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.53 E-value=0.074 Score=51.17 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=24.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.+...|+++|.+|+||||+...|+..+.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3567888999999999999999998764
No 280
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.52 E-value=0.033 Score=52.49 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=24.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHD 253 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~ 253 (625)
+|.++|.+||||||+++.|++.+...|.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~ 32 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLR 32 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCc
Confidence 68899999999999999999998755433
No 281
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase, phytate binding site, hydrolase; HET: IHP; 1.88A {Enterobacter cloacae} PDB: 1nt4_A*
Probab=93.51 E-value=0.23 Score=53.15 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=48.5
Q ss_pred cEEEeccccccC-CC---------CC---Cc-CCCCCCCHHHHHHHHHHHHHHHHHhc--C-------C--CCCEEEEcC
Q 006920 433 PILLTRHGESRD-NV---------RG---RI-GGDTILSDAGEIYAKKLANFVEKRLK--S-------E--RAASIWTST 487 (625)
Q Consensus 433 ~I~LVRHGes~~-n~---------~~---~~-~gD~pLTe~G~~QA~~l~~~L~~~l~--~-------~--~~~~I~sSp 487 (625)
-++|.|||-..- .. .. .+ .+...||+.|.+|...+|++|++++. + . ..-.|+++.
T Consensus 10 V~vl~RHG~R~P~~~~~~~~~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~~~ll~~~~~~~~~~v~vrst~ 89 (398)
T 3ntl_A 10 VLIMSRANLRAPLANNGSVLEQSTPKQWPEWEVPGGQLTTKGGVLEVYMGHYMREWLAQQGMVKTGECPAADSVYAYANS 89 (398)
T ss_dssp EEEEEECCSBCCCGGGHHHHHHTCSSCCCCCSSCTTSBCHHHHHHHHHHHHHHHHHHHHTTSSCTTSCCCTTSEEEEECS
T ss_pred EEEEecCCCCCCCCCCcccccCCCCcccccCCCCccccchHHHHHHHHHHHHHHHHHhhcCCCccccCCCcCeEEEEECC
Confidence 356789998643 11 00 11 22678999999999999999998872 1 1 223688999
Q ss_pred cHHHHHHHHHh
Q 006920 488 LQRTILTASPI 498 (625)
Q Consensus 488 l~Ra~qTA~~i 498 (625)
..||++||+.+
T Consensus 90 ~~Rt~~SA~~f 100 (398)
T 3ntl_A 90 LQRTVATAQFF 100 (398)
T ss_dssp SHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 99999999998
No 282
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.48 E-value=0.045 Score=52.63 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=23.9
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
.+..++.++|-+||||||+++.|+..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999754
No 283
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.46 E-value=0.043 Score=53.48 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=32.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
|.+.|-.|+||||+|..||..|...|.++-++|.|-
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 444899999999999999999998899999999884
No 284
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.35 E-value=0.042 Score=55.28 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~ 248 (625)
++++|-||+||||+++.|+..++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 88999999999999999999876
No 285
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.34 E-value=0.071 Score=55.71 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=32.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
-.+..++.++|.|||||||+.+.|+..+...+.++.++..|
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d 92 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 92 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEc
Confidence 45678999999999999999999998876555555565544
No 286
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.33 E-value=0.056 Score=57.49 Aligned_cols=30 Identities=23% Similarity=0.080 Sum_probs=25.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..+.+|+++|.|||||||+++.|+..++..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~ 196 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGK 196 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCc
Confidence 456689999999999999999999887543
No 287
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.24 E-value=0.051 Score=56.32 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=29.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc---CCcceEEec
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL---GHDTKHFNV 259 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~---g~~~~~~~~ 259 (625)
..+..++++|.||+||||+++.+++.+... +..+..++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 445688999999999999999999988432 344445553
No 288
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.15 E-value=0.066 Score=49.73 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=25.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
..+.++.++|-.||||||+.+.|+..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4567999999999999999999998873
No 289
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 4e3w_A 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A*
Probab=93.09 E-value=0.25 Score=51.60 Aligned_cols=66 Identities=20% Similarity=0.193 Sum_probs=48.3
Q ss_pred cEEEeccccccCCCCCC-----c-CCCCCCCHHHHHHHHHHHHHHHHHh---cCC-------CCCEEEEcCcHHHHHHHH
Q 006920 433 PILLTRHGESRDNVRGR-----I-GGDTILSDAGEIYAKKLANFVEKRL---KSE-------RAASIWTSTLQRTILTAS 496 (625)
Q Consensus 433 ~I~LVRHGes~~n~~~~-----~-~gD~pLTe~G~~QA~~l~~~L~~~l---~~~-------~~~~I~sSpl~Ra~qTA~ 496 (625)
-+++.|||...-..... + .+...||+.|.+|...+|++|++++ .+. .--.+.+++..||++||+
T Consensus 11 v~v~~RHG~R~p~~~~p~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~~Yv~~~~~l~~~~~~~~v~~rst~~~Rt~~Sa~ 90 (342)
T 3it3_A 11 VSMITRHGDRAPFANIENANYSWGTELSELTPIGMNQEYNLGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQ 90 (342)
T ss_dssp EEEEEECCCBCCSSCCTTCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHTTTSCSSCSSCCTTSEEEEECSSHHHHHHHH
T ss_pred EEEEEeCCCCCCcccCCCCcccCCCChHhhhHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEECCChHHHHHHH
Confidence 35678999875321100 1 1245799999999999999999887 221 123678999999999999
Q ss_pred Hh
Q 006920 497 PI 498 (625)
Q Consensus 497 ~i 498 (625)
.+
T Consensus 91 ~~ 92 (342)
T 3it3_A 91 SL 92 (342)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 290
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.01 E-value=0.059 Score=55.47 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
-|+++|-||+|||++|+.+++.++..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 48999999999999999999998755
No 291
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.98 E-value=0.084 Score=55.55 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=36.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc--ccCCcceEEechH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGK 261 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~--~~g~~~~~~~~D~ 261 (625)
.+.++++.|-.|.||||+|..||..|. ..|.++-++|.|-
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 457888999999999999999999998 8999999999984
No 292
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP; 2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A* 1dkm_A 1dkn_A 1dko_A 1dkl_A
Probab=92.96 E-value=0.19 Score=53.86 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=47.7
Q ss_pred EEEeccccccCCCCC------------Cc-CCCCCCCHHHHHHHHHHHHHHHHHhcC---C--------CCCEEEEcCcH
Q 006920 434 ILLTRHGESRDNVRG------------RI-GGDTILSDAGEIYAKKLANFVEKRLKS---E--------RAASIWTSTLQ 489 (625)
Q Consensus 434 I~LVRHGes~~n~~~------------~~-~gD~pLTe~G~~QA~~l~~~L~~~l~~---~--------~~~~I~sSpl~ 489 (625)
.+|.|||...-.... .+ .+.-.||..|..|...+|++|++++.. . .--.|+++...
T Consensus 12 ~vl~RHG~R~P~~~~~~~~~~~~~~w~~w~~~~g~LT~~G~~~~~~lG~~lr~ry~~~~ll~~~~~p~~~~v~v~st~~~ 91 (410)
T 1dkq_A 12 VIVSRAGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVDE 91 (410)
T ss_dssp EEEEECCSBCCSCCCHHHHHTCSSCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCCTTTEEEEECSSH
T ss_pred EEEecCCcCCCCCCCccccccCcccccCCCCCCCccchHHHHHHHHHHHHHHHHHHhcCCCccccCCCcceEEEEeCCcH
Confidence 467799987542211 01 124579999999999999999988631 1 12258999999
Q ss_pred HHHHHHHHh
Q 006920 490 RTILTASPI 498 (625)
Q Consensus 490 Ra~qTA~~i 498 (625)
||++||+.+
T Consensus 92 RT~~SA~~~ 100 (410)
T 1dkq_A 92 RTRKTGEAF 100 (410)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999998
No 293
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.94 E-value=0.07 Score=53.08 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=33.6
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.+.+.+..|-.|+||||+|..||..|. .|.++-++|.|-
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~ 65 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDT 65 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECT
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCC
Confidence 345556678999999999999999999 899999999884
No 294
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.91 E-value=0.11 Score=50.70 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=34.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc-CCcceEEechH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGK 261 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~-g~~~~~~~~D~ 261 (625)
+.+.+..+-.|+||||+|..||..|... |.++-++|.|-
T Consensus 5 ~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 44 (245)
T 3ea0_A 5 RVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISL 44 (245)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCT
T ss_pred eEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence 4556666889999999999999999987 99999999984
No 295
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.89 E-value=0.062 Score=59.34 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=24.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+..++++|.||+||||+|+.+++.+++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4578999999999999999999998644
No 296
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.87 E-value=0.087 Score=55.38 Aligned_cols=40 Identities=18% Similarity=0.053 Sum_probs=36.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHc--ccCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~--~~g~~~~~~~~D 260 (625)
....++++.|-.|.||||+|..||..+- ..|.++-++|.|
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3457889999999999999999999998 889999999998
No 297
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.86 E-value=0.059 Score=58.56 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=24.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
+.-++|+|.||+|||++|+.|++.++.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 345889999999999999999999873
No 298
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.85 E-value=0.21 Score=54.95 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=28.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
.+.-|+++|-||+|||++|++++..++.. ...++...+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~---fv~vn~~~l 274 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAF---FFLINGPEI 274 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSE---EEEEEHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCC---EEEEEchHh
Confidence 34458899999999999999999987644 334554433
No 299
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.85 E-value=0.31 Score=48.11 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=21.4
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.++.-|+++|.+|+||||+..+|...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 44577999999999999999888643
No 300
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.84 E-value=0.26 Score=54.40 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=30.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEec
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 259 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~ 259 (625)
.+..++.++|.|||||||+++.++..+...|.++..+..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 456789999999999999999999877545555545543
No 301
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.84 E-value=0.048 Score=53.22 Aligned_cols=26 Identities=15% Similarity=0.402 Sum_probs=23.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
-.|++.|.||+||||+|.+|++.+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45899999999999999999998853
No 302
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.81 E-value=0.15 Score=52.13 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=33.8
Q ss_pred CCcEEEEEEc-cCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 221 HRHLAIVLVG-LPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 221 ~~p~lIvl~G-LPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.++.+|+++| -+|.||||+|..||..|...|.++-++|.|-
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3445565555 6899999999999999988899999999884
No 303
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=92.77 E-value=0.073 Score=53.88 Aligned_cols=41 Identities=10% Similarity=-0.027 Sum_probs=33.9
Q ss_pred CcEEEEEE--ccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 222 RHLAIVLV--GLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 222 ~p~lIvl~--GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
++.+.++. +-.|+||||+|..||..|...|.++-++|.|--
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q 76 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ 76 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 34455555 699999999999999999888999999999854
No 304
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.76 E-value=0.096 Score=52.01 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=32.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
+|.++|-.|+||||+|..||..|...|.++-++|.|
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D 38 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCC
Confidence 455579999999999999999998889999999988
No 305
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.74 E-value=0.082 Score=53.18 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=24.8
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
+..++.++|-+||||||+.+.|+..+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 4568999999999999999999998753
No 306
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.72 E-value=0.036 Score=51.53 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
...=|+++|.+|+||||+.+.|.....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 346699999999999999987765543
No 307
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.70 E-value=0.084 Score=50.16 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
...-|+++|.||+||||+|..|.++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3457999999999999999999874
No 308
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.66 E-value=0.093 Score=52.96 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=32.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
+|.++|-.|+||||+|..||..|...|.++-++|.|
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D 39 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD 39 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 455589999999999999999998889999999988
No 309
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.64 E-value=0.061 Score=51.49 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=23.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccC
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLG 251 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g 251 (625)
++.++|.+||||||+.+.|+..+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 588999999999999999999885333
No 310
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.47 E-value=0.096 Score=48.44 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
+.++.-|+++|.+|+||||+...|..
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44667899999999999999999975
No 311
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.45 E-value=0.071 Score=57.92 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=19.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
...|+++|.||+||||+..+|..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34799999999999999988853
No 312
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.37 E-value=0.077 Score=54.81 Aligned_cols=27 Identities=22% Similarity=0.545 Sum_probs=24.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
.++.++.++|-+||||||+++.|+..+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345689999999999999999999887
No 313
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.36 E-value=0.067 Score=51.92 Aligned_cols=40 Identities=13% Similarity=-0.046 Sum_probs=29.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHH--cc----cCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYL--RW----LGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L--~~----~g~~~~~~~~D 260 (625)
.++.++.++|-||+||||+++.|+... .. .+..+.+++..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 345689999999999999999999852 11 23445566554
No 314
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.35 E-value=0.1 Score=50.61 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=33.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+.+.+..+-.|+||||+|..||..|...|.++-++|.|-
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 345566678899999999999999988899999999874
No 315
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.35 E-value=0.15 Score=49.87 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=33.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEe
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 258 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~ 258 (625)
..+..|++.+|-|||||||.+-.++..+...|.++.++.
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 455689999999999999999999999887788888874
No 316
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.34 E-value=0.1 Score=50.71 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=28.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH-cccCCcceEEec
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL-RWLGHDTKHFNV 259 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L-~~~g~~~~~~~~ 259 (625)
++.+++++|-||+|||++|.+++... ...+..+.+++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 35689999999999999999987653 233445556654
No 317
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.32 E-value=0.12 Score=49.70 Aligned_cols=37 Identities=30% Similarity=0.262 Sum_probs=32.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.+.+..+-.|+||||+|..||..|...| ++-++|.|-
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~ 38 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDP 38 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCC
Confidence 3556678899999999999999999889 999999873
No 318
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.31 E-value=0.082 Score=54.14 Aligned_cols=31 Identities=23% Similarity=0.090 Sum_probs=26.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
...|.++++.|-||+||||+|+.+++.++..
T Consensus 45 ~~~~~~~L~~G~~G~GKT~la~~la~~l~~~ 75 (324)
T 3u61_B 45 GKIPHIILHSPSPGTGKTTVAKALCHDVNAD 75 (324)
T ss_dssp TCCCSEEEECSSTTSSHHHHHHHHHHHTTEE
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCC
Confidence 4456688999999999999999999998644
No 319
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.17 E-value=0.085 Score=57.15 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
.+.-|+|+|.||+|||++|++++..+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999999998
No 320
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.15 E-value=0.091 Score=54.51 Aligned_cols=29 Identities=31% Similarity=0.249 Sum_probs=25.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+..++++|-||+||||+|+.+++.+...
T Consensus 37 ~~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp CCSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34578999999999999999999998753
No 321
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.13 E-value=0.076 Score=54.67 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=21.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHHc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~ 248 (625)
++++|.||+||||+|+.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999975
No 322
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.12 E-value=0.081 Score=54.70 Aligned_cols=28 Identities=18% Similarity=0.174 Sum_probs=23.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
...|. ++++|-+|+||||+++.|++.+.
T Consensus 34 ~~~~~-~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 34 RDLPH-LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp TCCCC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred CCCCe-EEEECCCCCCHHHHHHHHHHHHc
Confidence 34455 89999999999999999999764
No 323
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=92.04 E-value=0.11 Score=58.34 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=36.2
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
..+.+++++|-+|.||||+|..||..+-..|.++-++|.|
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 3456889999999999999999999998889999999998
No 324
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.90 E-value=0.028 Score=50.82 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=20.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHHc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~ 248 (625)
|+++|-||+|||++|+.++....
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS
T ss_pred EEEECCCCccHHHHHHHHHHhCC
Confidence 77899999999999999987654
No 325
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.87 E-value=0.082 Score=53.84 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=23.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..++++|-||+||||+|+.+++.++..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~ 65 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVN 65 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 458889999999999999999988644
No 326
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.85 E-value=0.059 Score=55.48 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=23.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
-++++|-||+|||++|+.|++.++..
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 38899999999999999999988654
No 327
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=91.84 E-value=0.14 Score=50.71 Aligned_cols=39 Identities=31% Similarity=0.297 Sum_probs=33.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+.+.+..+-.|+||||+|..||..|...|.++-++|.|-
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 356666789999999999999999988899999999874
No 328
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.84 E-value=0.23 Score=57.94 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=25.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..+.-|+|+|-||+||||+|+.|+..++..
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 445669999999999999999999987654
No 329
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=91.81 E-value=0.13 Score=50.62 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=33.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+.+.+..+-.|+||||+|..||..|...|.++-++|.|-
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 355666788899999999999999998899999999884
No 330
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.80 E-value=0.089 Score=54.47 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=22.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHHccc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
++++|-||+||||+|+.+++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 8899999999999999999998643
No 331
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=91.70 E-value=0.063 Score=56.18 Aligned_cols=31 Identities=19% Similarity=0.037 Sum_probs=27.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+.+++.|++-|.-||||||+++.|+++|+..
T Consensus 4 ~~~~~fI~~EG~dGaGKTT~~~~La~~L~~~ 34 (334)
T 1p6x_A 4 MVTIVRIYLDGVYGIGKSTTGRVMASAASGG 34 (334)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 4457899999999999999999999999864
No 332
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella pneumoniae} PDB: 2wni_A 2wu0_A
Probab=91.70 E-value=0.3 Score=52.34 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=47.3
Q ss_pred EEEeccccccCCCC----------C---CcC-CCCCCCHHHHHHHHHHHHHHHHHhc--CC------C--CCEEEEcCcH
Q 006920 434 ILLTRHGESRDNVR----------G---RIG-GDTILSDAGEIYAKKLANFVEKRLK--SE------R--AASIWTSTLQ 489 (625)
Q Consensus 434 I~LVRHGes~~n~~----------~---~~~-gD~pLTe~G~~QA~~l~~~L~~~l~--~~------~--~~~I~sSpl~ 489 (625)
.+|.|||...-... . .+. +...||+.|.+|...+|++|++++. +. . .-.+++|...
T Consensus 20 ~~~~RHG~R~P~~~~~~~l~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~~~ll~~~~~~~~~v~~rst~~~ 99 (418)
T 2wnh_A 20 VELSRHGIRPPTAGNREAIEAATGRPWTEWTTHDGELTGHGYAAVVNKGREEGQHYRQLGLLQAGCPTAESIYVRASPLQ 99 (418)
T ss_dssp EEEEECCCCCCCHHHHHHHHHHHTSCCCCCSSCTTSCCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCTTTEEEEECSSH
T ss_pred EEEEeCCCCCCCCCcchhHHhcCccccccCCCCcCccChhHHHHHHHHHHHHHHHHHhcCCcccCCCCCCeEEEEECCCH
Confidence 45789998743220 0 011 2468999999999999999988764 21 1 1258899999
Q ss_pred HHHHHHHHh
Q 006920 490 RTILTASPI 498 (625)
Q Consensus 490 Ra~qTA~~i 498 (625)
||++||+.+
T Consensus 100 Rt~~Sa~~f 108 (418)
T 2wnh_A 100 RTRATAQAL 108 (418)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999998
No 333
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.68 E-value=0.056 Score=55.68 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=22.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~ 249 (625)
|+++|-||+|||++|+.+++.++.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEECCCCccHHHHHHHHHHhCcc
Confidence 889999999999999999998863
No 334
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.65 E-value=0.098 Score=58.26 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=25.6
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
++..++++|-||+||||+|+.|+..++..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 56689999999999999999999998643
No 335
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.59 E-value=0.91 Score=57.68 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=35.0
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.++..|+++|.||+||||+|.+++......|.++.+++..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 3567899999999999999999998877778888898865
No 336
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.56 E-value=0.15 Score=58.86 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=21.2
Q ss_pred EEEEccCCCCHHHHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L 247 (625)
++++|-||+|||++|+.|++.+
T Consensus 204 vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 337
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.50 E-value=0.15 Score=45.99 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
..++.-|+++|.+|+||||+..+|..
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 45667899999999999999999864
No 338
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.42 E-value=1.2 Score=45.39 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=22.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
+..+-.|.++|.||+||||+..+|..
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhC
Confidence 55667899999999999999988864
No 339
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.41 E-value=0.11 Score=52.22 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
+..+++++|-|||||||++..++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999998653
No 340
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.35 E-value=0.16 Score=58.64 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=33.4
Q ss_pred CCCcE-EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 220 EHRHL-AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 220 ~~~p~-lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
+.+|. -++++|-||+|||++|+.|++.+...+.....++...+
T Consensus 517 ~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 517 PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY 560 (758)
T ss_dssp TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence 34554 68999999999999999999998655556667776544
No 341
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.21 E-value=0.55 Score=54.08 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=29.1
Q ss_pred CCc-EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechHH
Q 006920 221 HRH-LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 262 (625)
Q Consensus 221 ~~p-~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~~ 262 (625)
.+| .-++++|-||+|||++|+.|++.++. ....++...+
T Consensus 485 ~~p~~~~ll~G~~GtGKT~la~~la~~l~~---~~~~i~~s~~ 524 (758)
T 1r6b_X 485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGI---ELLRFDMSEY 524 (758)
T ss_dssp TSCSEEEEEECSTTSSHHHHHHHHHHHHTC---EEEEEEGGGC
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHHhcC---CEEEEechhh
Confidence 344 36899999999999999999999853 3445555433
No 342
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.17 E-value=0.14 Score=54.31 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
..+.+|+++|.+||||||+.+.|+..+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 34568999999999999999999998764
No 343
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.15 E-value=0.1 Score=51.71 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=33.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
+.+.+..+-.|+||||+|..||..|...|.++-++|.|-
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 344455578899999999999999988899999999884
No 344
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.11 E-value=0.27 Score=49.51 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
+.-|+++|.||+||||+..+|...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999754
No 345
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.06 E-value=0.15 Score=52.23 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=27.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEec
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 259 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~ 259 (625)
-|+++|-||+|||++|+.++......+.....++.
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~ 61 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSARSDRPLVTLNC 61 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEEC
T ss_pred cEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeC
Confidence 47889999999999999999987654445555653
No 346
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.05 E-value=0.21 Score=51.69 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=30.8
Q ss_pred HHHHHHhcCCCCCCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 209 AAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 209 ~~la~~~~~~~~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
..+..... ..+-+..++++|-||+||||+|+.+++.+...
T Consensus 12 ~~l~~~i~--~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 12 EKLVASYQ--AGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp HHHHHHHH--TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHH--cCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 34444443 34556789999999999999999999998754
No 347
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=90.87 E-value=0.14 Score=56.55 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=22.2
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~ 249 (625)
|+|+|-||+||||+|+.|+..++.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~ 90 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARV 90 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999999999998763
No 348
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.85 E-value=0.11 Score=51.26 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
.+.++.++|-+||||||+.+.|+..+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34579999999999999999987544
No 349
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.81 E-value=0.16 Score=51.30 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=21.7
Q ss_pred EEEEccCCCCHHHHHHHHHHHHc
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~ 248 (625)
++++|-||+||||+|+.+++.+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 89999999999999999999974
No 350
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.72 E-value=0.19 Score=53.05 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=33.3
Q ss_pred CCcEEEE-EEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRHLAIV-LVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIv-l~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.++.+|. ..|-.|+||||+|..||..|...|.++-++|.|
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3444444 457999999999999999998889999999988
No 351
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=90.70 E-value=0.15 Score=55.59 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
-++++|-||+|||++|+.|++.+.
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHH
Confidence 358899999999999999999984
No 352
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.63 E-value=0.24 Score=50.07 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=24.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.++--|++.|.||+|||++|++|+..+...
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~ 131 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY 131 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 334569999999999999999999976543
No 353
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.62 E-value=0.17 Score=54.59 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=18.7
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~ 245 (625)
.|+++|.||+||||+..+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEE
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999888853
No 354
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.62 E-value=1.1 Score=56.97 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=38.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH----HHHHHcCCCCC
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK----YRRLKHGVNQS 272 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~----~Rk~~~g~~~~ 272 (625)
++.++++.|-||+||||+|..++......|..+-+|+... ++-...|.+..
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~a~~lGvd~~ 436 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDID 436 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHcCCCHH
Confidence 4569999999999999999999998876667777887653 33334455443
No 355
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.53 E-value=0.13 Score=50.99 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=22.6
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
++.++.++|-+||||||+.+.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998665
No 356
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=90.41 E-value=0.14 Score=54.33 Aligned_cols=32 Identities=22% Similarity=0.068 Sum_probs=24.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccC
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG 251 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g 251 (625)
+.+++.|++-|.-||||||+++.|+++|...|
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 45678899999999999999999999987654
No 357
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.38 E-value=0.17 Score=46.11 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
...|+++|.+|+||||+..+|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 35699999999999999999975
No 358
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.33 E-value=0.12 Score=50.51 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
+.++.++|.+||||||+.+.|+..+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999987543
No 359
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.29 E-value=0.18 Score=46.56 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.+.-|+++|.||+||||+...|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999754
No 360
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.28 E-value=0.21 Score=52.80 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=30.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 226 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
++++|-+||||||+++.|...+...|..+.++|.+
T Consensus 38 ~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67899999999999999998887778888888865
No 361
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.26 E-value=0.19 Score=45.66 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=22.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.....-|+++|.+|+||||+..+|...
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcC
Confidence 344567999999999999999998754
No 362
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.24 E-value=0.16 Score=50.41 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=23.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.+.++.++|-+||||||+.+.|+..+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999976553
No 363
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.22 E-value=0.19 Score=45.09 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
...-|+++|.+|+||||+...|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4566899999999999999998764
No 364
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.11 E-value=0.72 Score=57.74 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=33.7
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.++.+|++.|-||+||||+|..++......|.++.+|+..
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E 769 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 769 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc
Confidence 3456899999999999999999999887667777788765
No 365
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.07 E-value=0.2 Score=44.61 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.-|+++|.+|+||||+...|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998754
No 366
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.06 E-value=0.2 Score=46.45 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.2
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.+..-|+++|.+|+||||+...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45568999999999999999998754
No 367
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.06 E-value=0.16 Score=53.42 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=23.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
...+.++|-+||||||+++.|+..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999988753
No 368
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=90.05 E-value=0.26 Score=55.15 Aligned_cols=40 Identities=30% Similarity=0.305 Sum_probs=36.2
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
....++++.|.+|.||||+|..||..+...|.++-++|.|
T Consensus 325 ~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~D 364 (589)
T 1ihu_A 325 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 364 (589)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred cCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCC
Confidence 3457888999999999999999999998889999999988
No 369
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.04 E-value=0.19 Score=47.88 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=22.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
..+..-|+++|.+|+||||+..+|....
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445679999999999999999998654
No 370
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=89.52 E-value=0.058 Score=51.05 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=21.6
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
..+..-|+++|.+|+||||+..+|..
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 34567799999999999999988764
No 371
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.00 E-value=0.21 Score=45.42 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
..++.-|+++|.+|+||||+..+|..
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34566799999999999999998864
No 372
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.88 E-value=0.21 Score=52.54 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=24.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
-+|+++|-+||||||+.+.|+..+...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 489999999999999999999888643
No 373
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.85 E-value=1.5 Score=55.00 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=33.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
++.+++++|-||+||||+|.+++......|..+-+|+.+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E 420 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 420 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 466899999999999999999998876667777788765
No 374
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.83 E-value=0.2 Score=46.99 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
....|+++|.+|+||||+.+.|....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34679999999999999999998653
No 375
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=89.76 E-value=0.2 Score=50.61 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=32.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.+.+..+-.|+||||+|..||..|...|.++-++|.|-
T Consensus 6 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 6 VIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 44455578899999999999999988899999999885
No 376
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.75 E-value=0.25 Score=44.95 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.0
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
..+..-|+++|.+|+||||+..+|..
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHh
Confidence 34567799999999999999999874
No 377
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.72 E-value=0.16 Score=51.08 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
++.++.++|.+||||||+.+.|+..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999997654
No 378
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.63 E-value=0.13 Score=48.68 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
..+..|+++|.+|+||||+.+.|..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3467899999999999999988864
No 379
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.62 E-value=0.35 Score=52.02 Aligned_cols=30 Identities=23% Similarity=0.142 Sum_probs=25.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+.-+|+++|-+||||||+.+.|...+...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 345689999999999999999999988644
No 380
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.61 E-value=0.18 Score=50.15 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
+.++.++|-+||||||+.+.|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 381
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.60 E-value=0.24 Score=45.58 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=22.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
.....=|+++|.+|+||||+...|..
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhc
Confidence 34456799999999999999999875
No 382
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.58 E-value=0.16 Score=51.31 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
+.++.++|-+||||||+.+.|+..+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4579999999999999999997654
No 383
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.53 E-value=0.16 Score=50.56 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
+.++.++|-+||||||+.+.|+..+.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45799999999999999999976553
No 384
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.51 E-value=0.24 Score=44.24 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
+.=|+++|.+|+||||+..+|...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 456999999999999998888753
No 385
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.50 E-value=0.2 Score=50.52 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
++.++.++|-.||||||+.+.|+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999875
No 386
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.47 E-value=0.16 Score=49.18 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
+.++.++|.+||||||+.+.|+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999999876
No 387
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.46 E-value=0.17 Score=50.98 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
++.++.++|.+||||||+.+.|+..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34579999999999999999997654
No 388
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.44 E-value=0.17 Score=51.13 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
++.++.++|-+||||||+.+.|+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999997654
No 389
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.43 E-value=0.17 Score=50.75 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=22.8
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
++.++.++|-+||||||+.+.|+..+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 345899999999999999999986553
No 390
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.38 E-value=0.2 Score=52.59 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=24.6
Q ss_pred CCcEEEEE--EccCCCCHHHHHHHHHHHHcc
Q 006920 221 HRHLAIVL--VGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 221 ~~p~lIvl--~GLPGSGKSTlAr~La~~L~~ 249 (625)
..+..+++ +|.||+||||+++.+++.+..
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 35667888 999999999999999998753
No 391
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.35 E-value=0.25 Score=50.36 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=26.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.+++++|.+|+||||+++.+++.+++. .++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~-----~~~~~ 63 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGI-----LIDCR 63 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEE-----EEEHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcE-----EEEee
Confidence 478999999999999999999887533 56543
No 392
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.33 E-value=0.38 Score=56.43 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
-++++|-||+||||+++.|++.+.
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHh
Confidence 368899999999999999999983
No 393
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.32 E-value=0.28 Score=43.83 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
+.=|+++|.+|+||||+...|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999988753
No 394
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.32 E-value=0.28 Score=57.16 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=25.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
|.=|+|.|.||+|||.+|+++|..++..
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 4448899999999999999999999877
No 395
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.32 E-value=0.23 Score=44.61 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
..-|+++|.+|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 45689999999999999998874
No 396
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.31 E-value=0.22 Score=46.05 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
..++.-|+++|.+|+||||+...|...
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcC
Confidence 345578999999999999999999754
No 397
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.31 E-value=0.2 Score=49.69 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.++.++|-+||||||+.+.|+..+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999986553
No 398
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.27 E-value=0.2 Score=51.73 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
-+++++|+.||||||+.+.|....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 478999999999999999998753
No 399
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.17 E-value=0.27 Score=55.18 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=28.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEE
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 257 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~ 257 (625)
.+++++|.||+||||+++.|.+.+...|.++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 4788999999999999999999887776666554
No 400
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.16 E-value=0.18 Score=49.94 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
+.++.++|-.||||||+.+.|+..+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999997554
No 401
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=89.14 E-value=0.14 Score=53.42 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=23.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHcccC
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 251 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~g 251 (625)
+.+.|++-|.-||||||+++.|+++|...|
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 457899999999999999999999987654
No 402
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.11 E-value=1.2 Score=47.65 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=23.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
+.-+.++|-||+||||+++.|++.+...
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 4467889999999999999999987643
No 403
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.10 E-value=0.26 Score=44.85 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=21.4
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.+..-|+++|.+|+||||+...|...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 44567999999999999999888653
No 404
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.10 E-value=0.25 Score=45.68 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=21.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.....-|+++|.+|+||||+..+|...
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 344567899999999999999998764
No 405
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.08 E-value=0.18 Score=49.49 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=22.8
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
++.++.++|..||||||+.+.|+..+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 345799999999999999999986653
No 406
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.01 E-value=0.18 Score=50.38 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=22.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.+.++.++|.+||||||+.+.|+..+.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345799999999999999999976553
No 407
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.00 E-value=0.17 Score=51.26 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=22.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
+.++.++|-+||||||+.+.|+..+.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45799999999999999999986553
No 408
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.99 E-value=0.26 Score=45.71 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=21.2
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
..+..-|+++|.+|+||||+..+|..
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHc
Confidence 34567799999999999999988864
No 409
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.94 E-value=0.19 Score=50.49 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
.+.++.++|-.||||||+.+.|+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34579999999999999999998655
No 410
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.94 E-value=0.12 Score=57.02 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
-|+|+|.||+|||++|+.|+..++
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 388999999999999999998874
No 411
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.93 E-value=0.13 Score=54.14 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHcc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLRW 249 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~~ 249 (625)
+.+++++|-+||||||+.+.|+..+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 457999999999999999999887653
No 412
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.93 E-value=0.2 Score=50.28 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
++.++.++|..||||||+.+.|+..+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999997654
No 413
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.87 E-value=0.26 Score=45.72 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=22.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
+.+++|-.||||||+.++|.-.|+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 889999999999999999987765
No 414
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.87 E-value=0.22 Score=44.85 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=18.2
Q ss_pred EEEEEccCCCCHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLT 244 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La 244 (625)
=|+++|.+|+||||+..+|.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999885
No 415
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.85 E-value=0.24 Score=44.43 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.=|+++|.+|+||||+..+|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999888754
No 416
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.82 E-value=0.21 Score=44.88 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=18.0
Q ss_pred EEEEEccCCCCHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLT 244 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La 244 (625)
=|+++|.+|+||||+..+|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999998874
No 417
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.82 E-value=0.32 Score=44.14 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.2
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.+..-|+++|.+|+||||+..+|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44567999999999999999998764
No 418
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.81 E-value=0.28 Score=44.40 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
+.-|+++|.+|+||||+..+|..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 45699999999999999988864
No 419
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.76 E-value=0.31 Score=52.85 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=25.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCC
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGH 252 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~ 252 (625)
.+++.|.|||||||++..+++.|...|.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999876655
No 420
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.69 E-value=0.17 Score=49.38 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
+.++.++|..||||||+.+.|+..+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999997655
No 421
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.67 E-value=0.29 Score=43.77 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
+.=|+++|.+|+||||+...|...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 355899999999999999998753
No 422
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.61 E-value=0.28 Score=46.14 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=21.9
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.+..=|+++|.+|+||||+..+|...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 45677999999999999999998764
No 423
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle, glycoprotein phosphohistidine, hydrolase; HET: NEP NAG; 1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB: 1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Probab=88.52 E-value=0.93 Score=48.78 Aligned_cols=46 Identities=20% Similarity=0.089 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcC---CCCCEEEEcCcHHHHHHHHHh
Q 006920 453 DTILSDAGEIYAKKLANFVEKRLKS---ERAASIWTSTLQRTILTASPI 498 (625)
Q Consensus 453 D~pLTe~G~~QA~~l~~~L~~~l~~---~~~~~I~sSpl~Ra~qTA~~i 498 (625)
.-.||+.|++|...+|++|++++.+ ...-.|.+|...||++||+.+
T Consensus 101 ~G~LT~~G~~q~~~lG~~lr~rY~~ll~~~~v~vrST~~~Rti~Sa~~f 149 (442)
T 1qwo_A 101 ADDLTPFGEQQLVNSGIKFYQRYKALARSVVPFIRASGSDRVIASGEKF 149 (442)
T ss_dssp SSSBCHHHHHHHHHHHHHHHHHTHHHHTTCCCEEEEESCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhccCceEEEeCCccHHHHHHHHH
Confidence 5679999999999999999877432 123469999999999999988
No 424
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.50 E-value=0.33 Score=44.53 Aligned_cols=27 Identities=19% Similarity=0.205 Sum_probs=22.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
..+..-|+++|.+|+||||+..+|...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 445677999999999999999998754
No 425
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.49 E-value=0.29 Score=45.99 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
..-|+++|.+|+||||+.+.|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999864
No 426
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.47 E-value=0.41 Score=44.12 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.++.-|+++|.+|+||||+..+|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45677999999999999999998764
No 427
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.46 E-value=0.26 Score=44.15 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=20.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
++.-|+++|.+|+||||+..+|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 356699999999999999999875
No 428
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.43 E-value=0.28 Score=44.10 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
+..=|+++|.+|+||||+...|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3466999999999999999998754
No 429
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.43 E-value=0.2 Score=46.44 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.1
Q ss_pred EEEEEccCCCCHHHHHHHHHH
Q 006920 225 AIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~ 245 (625)
-|+++|.+|+||||+.+.|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999875
No 430
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=88.41 E-value=0.41 Score=45.87 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=29.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEec
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 259 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~ 259 (625)
.+.+..+-+|+||||+|..||..|...|.++-+++.
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 344555579999999999999999888888888763
No 431
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.41 E-value=0.26 Score=44.26 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~ 245 (625)
.=|+++|.+|+||||+..+|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4589999999999999998864
No 432
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.31 E-value=0.25 Score=45.23 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLT 244 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La 244 (625)
.++.-|+++|.+|+||||+...|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 567889999999999999988775
No 433
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=88.25 E-value=1.7 Score=46.10 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=23.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.+...-|+++|.+++||||+..+|...+.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~ 36 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAA 36 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhh
Confidence 34456799999999999999999987643
No 434
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.23 E-value=0.29 Score=44.85 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
+++=|+++|.+|+||||+...|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4566999999999999999998753
No 435
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.23 E-value=0.33 Score=44.96 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
+.+..-|+++|.+|+||||+..+|..
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhc
Confidence 35667899999999999999888864
No 436
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.21 E-value=0.22 Score=49.64 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
+.++.++|-.||||||+.+.|+..+.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45799999999999999999976553
No 437
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.06 E-value=0.23 Score=50.45 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=22.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
+.++.++|-.||||||+.+.|+..+.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45799999999999999999986653
No 438
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.05 E-value=0.38 Score=44.64 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=22.2
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
.....-|+++|.+|+||||+..+|..
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHc
Confidence 34567799999999999999999875
No 439
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.01 E-value=0.52 Score=46.68 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=31.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEe
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 258 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~ 258 (625)
....|.+.+|-|||||||-+-.++......|.++.++.
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34689999999999999999998888877777887774
No 440
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.95 E-value=0.31 Score=44.25 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
....=|+++|.+|+||||+...|..
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHc
Confidence 3456699999999999999998864
No 441
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.89 E-value=0.32 Score=43.73 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
...-|+++|.+|+||||+..+|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4566999999999999999888753
No 442
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.87 E-value=0.34 Score=44.95 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
+..-|+++|.+|+||||+...|..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456689999999999999998864
No 443
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.84 E-value=0.27 Score=44.73 Aligned_cols=25 Identities=12% Similarity=0.302 Sum_probs=20.9
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
....=|+++|.+|+||||+...|..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3456789999999999999988853
No 444
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=87.77 E-value=0.39 Score=51.98 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
..+.-|+++|.||+||||+..+|..
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~ 217 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLG 217 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cccceeEEecCCCCCHHHHHHHHhC
Confidence 4567799999999999999998873
No 445
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=87.75 E-value=0.32 Score=47.45 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=21.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.....-|+++|.+|+||||+...|...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCC
Confidence 345678999999999999999888643
No 446
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=87.64 E-value=0.33 Score=49.42 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=26.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHcccCCcceEEec
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 259 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~ 259 (625)
+++++|.+|+||||+++.+++.+... ..+++.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~ 63 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLP---YIYLDL 63 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEc
Confidence 89999999999999999999987532 345654
No 447
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.64 E-value=0.34 Score=43.38 Aligned_cols=21 Identities=48% Similarity=0.491 Sum_probs=18.9
Q ss_pred EEEEccCCCCHHHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~~ 246 (625)
|+++|.+|+||||+..+|...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998754
No 448
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.62 E-value=0.28 Score=57.56 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=30.4
Q ss_pred CCc-EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRH-LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p-~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.+| .-++++|-||+|||++|+.|++.+...+.....++..
T Consensus 585 ~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~ 625 (854)
T 1qvr_A 585 NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 625 (854)
T ss_dssp SSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence 344 4789999999999999999999985444444556543
No 449
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.62 E-value=0.32 Score=44.09 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
++.-|+++|.+|+||||+...|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 446799999999999999999874
No 450
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.59 E-value=0.25 Score=49.33 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=21.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
+.++.++|-+||||||+.+.|+..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998655
No 451
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.59 E-value=0.4 Score=44.32 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
..+..-|+++|.+|+||||+..+|..
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 35667899999999999999998873
No 452
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.48 E-value=0.4 Score=43.61 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=22.3
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
..++.-|+++|.+|+||||+...|...
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhC
Confidence 344567999999999999999988653
No 453
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.45 E-value=0.31 Score=51.43 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
..++.++|.+||||||+.+.|+-.+.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 45799999999999999999987653
No 454
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.36 E-value=0.32 Score=44.59 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=21.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.+..-|+++|.+|+||||+..+|...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999998754
No 455
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=87.35 E-value=0.35 Score=53.60 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
....+|.++|+.|.||||+|+.++.
T Consensus 150 ~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 150 LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3568999999999999999999996
No 456
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.33 E-value=0.36 Score=43.99 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=21.9
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
...+.=|+++|.+|+||||+..+|...
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcC
Confidence 344567999999999999999888753
No 457
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=87.33 E-value=0.33 Score=45.99 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=20.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.+..-|+++|.+|+||||+..+|...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999998764
No 458
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=87.25 E-value=0.33 Score=51.38 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
++.++.++|.+||||||+.+.|+..+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34579999999999999999998654
No 459
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.20 E-value=0.4 Score=49.20 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=22.8
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.+.+++++|-||+||||+|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999976
No 460
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=87.18 E-value=0.4 Score=43.74 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
+..-|+++|.+|+||||+...|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 4567999999999999999988753
No 461
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=87.15 E-value=0.22 Score=52.36 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=33.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEechH
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 261 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D~ 261 (625)
.|.++.+-.|.||||+|..||..|...|.++-++|.|-
T Consensus 3 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~ 40 (361)
T 3pg5_A 3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDP 40 (361)
T ss_dssp EEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 45666689999999999999999988899999999883
No 462
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.14 E-value=0.34 Score=54.52 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=23.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 225 AIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 225 lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.++++|-||+||||+|+.|+..+...
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 68999999999999999999988644
No 463
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.12 E-value=0.32 Score=44.73 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=18.2
Q ss_pred EEEEccCCCCHHHHHHHHHH
Q 006920 226 IVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 226 Ivl~GLPGSGKSTlAr~La~ 245 (625)
|+++|.+|+||||+..+|..
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999988864
No 464
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=87.11 E-value=0.25 Score=51.81 Aligned_cols=32 Identities=28% Similarity=0.157 Sum_probs=28.5
Q ss_pred CCCcEEEEEEccCCCCHHHHH-HHHHHHHcccC
Q 006920 220 EHRHLAIVLVGLPARGKTFTA-AKLTRYLRWLG 251 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlA-r~La~~L~~~g 251 (625)
+.+++.|++-|.-|+||||++ +.|+++|+..|
T Consensus 9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g 41 (341)
T 1osn_A 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPN 41 (341)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTTTTSGG
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHhhCC
Confidence 556789999999999999999 99999987654
No 465
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=87.09 E-value=0.42 Score=50.57 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=32.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHc------ccCCcceEEechH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLR------WLGHDTKHFNVGK 261 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~------~~g~~~~~~~~D~ 261 (625)
+.|.+..|-.|.||||+|..||..|. ..|.++-++|.|-
T Consensus 109 ~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~ 153 (398)
T 3ez2_A 109 YVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP 153 (398)
T ss_dssp EEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence 34555558899999999999999987 3688999999983
No 466
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.09 E-value=0.2 Score=51.70 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=22.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.+.++.++|-+||||||+.+.|+..+.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 345799999999999999999987653
No 467
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=87.06 E-value=0.36 Score=47.69 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=21.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
...++-|+|+|.||+||||+...|..
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhC
Confidence 34567899999999999999988854
No 468
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=87.04 E-value=0.45 Score=44.43 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=21.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
....-|+++|.+|+||||+...|...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999888753
No 469
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.02 E-value=0.34 Score=51.52 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=23.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
...++.++|-+||||||+.+.|+-.+.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 345799999999999999999987653
No 470
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=86.99 E-value=0.31 Score=45.93 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=20.2
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLT 244 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La 244 (625)
.....-|+++|.+|+||||+..+|.
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHH
Confidence 3445779999999999999988874
No 471
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=86.91 E-value=0.41 Score=44.08 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=21.2
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
.++.-|+++|.+|+||||+..+|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999888864
No 472
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.91 E-value=0.42 Score=44.33 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=22.5
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.....=|+++|.+|+||||+...|...
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 344577999999999999999988763
No 473
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=86.87 E-value=0.59 Score=48.25 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=36.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEech
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 260 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~~D 260 (625)
.+..+|.+.|==|.||||++.-||..|-..|.++-++|.|
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4567899999999999999999999999999999999998
No 474
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=86.87 E-value=0.35 Score=50.97 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=22.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.+.++.++|.+||||||+.+.|+-.+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 345799999999999999999987653
No 475
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=86.84 E-value=0.41 Score=44.40 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.++..-|+++|.+|+||||+..+|...
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcC
Confidence 455677999999999999999998753
No 476
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.84 E-value=0.21 Score=58.37 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=25.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHccc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 250 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~~~ 250 (625)
.+..++|+|.||+||||+|+.|+..++..
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44568899999999999999999998754
No 477
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=86.83 E-value=0.35 Score=44.26 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=20.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
+..-|+++|.+|+||||+..+|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999998874
No 478
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=86.73 E-value=0.39 Score=44.83 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=20.9
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
....=|+++|.+|+||||+..+|..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3456699999999999999988863
No 479
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=86.71 E-value=0.44 Score=43.91 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
..-|+++|.+|+||||+..+|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999888654
No 480
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=86.67 E-value=0.64 Score=45.51 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=29.0
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHHHcccCCcceEEe
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 258 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~L~~~g~~~~~~~ 258 (625)
...+.|.+++|-+||||||.+-.++..+...|.++.++.
T Consensus 25 ~~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 25 YHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 456789999999999999966555666665677777774
No 481
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=86.65 E-value=0.37 Score=50.89 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=22.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
.+.++.++|-+||||||+.+.|+-.+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 345799999999999999999987653
No 482
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=86.64 E-value=0.4 Score=44.16 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=20.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
..+..-|+++|.+|+||||+..+|..
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhc
Confidence 45567899999999999999988864
No 483
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=86.61 E-value=0.47 Score=49.07 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
..-++++|.||+||||+|..|.++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 467999999999999999999875
No 484
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=86.58 E-value=0.44 Score=44.58 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=21.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
....-|+++|.+|+||||+...|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 44567999999999999999988654
No 485
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.58 E-value=0.32 Score=49.67 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
++.++.++|-.||||||+.+.|+..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34579999999999999999997655
No 486
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=86.55 E-value=0.38 Score=44.93 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=20.0
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
.++.-|+++|.+|+||||+..+|..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3445689999999999999999875
No 487
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=86.54 E-value=0.42 Score=45.01 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.4
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLT 244 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La 244 (625)
.++.-|+++|.+|+||||+..+|.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 345568999999999999998885
No 488
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.48 E-value=0.32 Score=48.93 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
+.++.++|.+||||||+.+.|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998655
No 489
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=86.46 E-value=0.5 Score=45.49 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.1
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
..+..-|+++|.+|+||||+..+|..
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35667899999999999999888854
No 490
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.45 E-value=0.45 Score=47.92 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 224 LAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 224 ~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
+.+.++|-+||||||+.+.|+..+.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4688999999999999999998764
No 491
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.43 E-value=0.53 Score=43.77 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 220 EHRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 220 ~~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
..+.+=|+++|.+|+||||+..++...
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 455678999999999999999887654
No 492
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=86.43 E-value=0.46 Score=43.40 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=20.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
+..=|+++|.+|+||||+..+|...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999888753
No 493
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=86.42 E-value=0.42 Score=50.44 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.7
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLT 244 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La 244 (625)
.+..=|++.|-+||||||+++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 446678999999999999999993
No 494
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=86.38 E-value=0.43 Score=52.99 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.0
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTR 245 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~ 245 (625)
..+.+|.++|++|.||||+|+.++.
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 4567899999999999999999964
No 495
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.34 E-value=0.39 Score=50.90 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=22.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
..++.++|-+||||||+.+.|+-.+
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4579999999999999999998655
No 496
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=86.31 E-value=0.52 Score=43.63 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=21.8
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
....-|+++|.+|+||||+..+|...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999998754
No 497
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=86.29 E-value=0.41 Score=44.20 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 222 RHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 222 ~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
+..-|+++|.+|+||||+..+|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999998754
No 498
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.27 E-value=0.38 Score=50.65 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHHc
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYLR 248 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L~ 248 (625)
..++.++|.+||||||+.+.|+-.+.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45799999999999999999986553
No 499
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.24 E-value=0.43 Score=44.37 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHHHHH
Q 006920 223 HLAIVLVGLPARGKTFTAAKLTRYL 247 (625)
Q Consensus 223 p~lIvl~GLPGSGKSTlAr~La~~L 247 (625)
.+=|+++|.+|+||||+...|...-
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4569999999999999999988654
No 500
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.17 E-value=0.52 Score=43.98 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=21.7
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHHHH
Q 006920 221 HRHLAIVLVGLPARGKTFTAAKLTRY 246 (625)
Q Consensus 221 ~~p~lIvl~GLPGSGKSTlAr~La~~ 246 (625)
.+..=|+++|.+|+||||+..+|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999998754
Done!