Query 006923
Match_columns 625
No_of_seqs 261 out of 792
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 16:25:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02830 UDP-sugar pyrophospho 100.0 7E-146 1E-150 1222.5 56.6 610 14-624 2-615 (615)
2 PLN02435 probable UDP-N-acetyl 100.0 1.8E-96 4E-101 804.1 39.2 448 38-530 21-483 (493)
3 PLN02474 UTP--glucose-1-phosph 100.0 5.1E-92 1.1E-96 765.2 37.2 436 84-583 24-464 (469)
4 cd06424 UGGPase UGGPase cataly 100.0 5.2E-91 1.1E-95 726.6 28.1 315 141-458 1-315 (315)
5 PTZ00339 UDP-N-acetylglucosami 100.0 7.7E-90 1.7E-94 754.1 36.1 454 43-530 2-473 (482)
6 KOG2638 UDP-glucose pyrophosph 100.0 4E-86 8.6E-91 687.9 26.0 433 84-583 52-490 (498)
7 PF01704 UDPGP: UTP--glucose-1 100.0 5.3E-84 1.1E-88 700.4 25.1 414 86-558 2-420 (420)
8 KOG2388 UDP-N-acetylglucosamin 100.0 1.5E-82 3.2E-87 677.8 24.5 445 39-532 3-462 (477)
9 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 4.2E-75 9E-80 614.0 27.1 312 129-458 2-323 (323)
10 cd00897 UGPase_euk Eukaryotic 100.0 9.3E-75 2E-79 602.6 24.5 289 138-461 1-291 (300)
11 COG4284 UDP-glucose pyrophosph 100.0 4E-69 8.6E-74 576.4 30.0 444 37-582 13-469 (472)
12 cd04180 UGPase_euk_like Eukary 100.0 2.6E-62 5.6E-67 504.8 27.0 265 141-456 1-266 (266)
13 COG1207 GlmU N-acetylglucosami 98.4 3.5E-05 7.5E-10 83.5 20.9 274 140-518 2-279 (460)
14 PRK14356 glmU bifunctional N-a 98.2 0.00015 3.3E-09 80.5 21.6 41 140-183 5-45 (456)
15 PRK14359 glmU bifunctional N-a 98.2 0.00081 1.8E-08 74.0 25.9 178 141-395 3-180 (430)
16 PRK15480 glucose-1-phosphate t 97.8 0.00051 1.1E-08 72.5 16.2 145 140-334 3-150 (292)
17 PRK14355 glmU bifunctional N-a 97.7 0.0031 6.7E-08 70.4 21.1 185 140-395 3-188 (459)
18 TIGR01173 glmU UDP-N-acetylglu 97.7 0.0032 7E-08 69.6 20.9 62 142-219 2-63 (451)
19 PRK05293 glgC glucose-1-phosph 97.7 0.0011 2.4E-08 71.9 16.9 196 140-395 3-205 (380)
20 PRK00844 glgC glucose-1-phosph 97.7 0.001 2.3E-08 73.2 16.5 206 137-396 2-213 (407)
21 TIGR01207 rmlA glucose-1-phosp 97.7 0.00083 1.8E-08 70.7 15.0 141 143-334 2-146 (286)
22 cd04197 eIF-2B_epsilon_N The N 97.7 0.00087 1.9E-08 67.1 14.3 68 143-226 3-73 (217)
23 cd02509 GDP-M1P_Guanylyltransf 97.6 0.0015 3.2E-08 68.3 14.9 197 142-397 2-209 (274)
24 cd06425 M1P_guanylylT_B_like_N 97.5 0.003 6.5E-08 63.7 15.5 176 143-390 3-183 (233)
25 cd02540 GT2_GlmU_N_bac N-termi 97.5 0.0061 1.3E-07 60.8 17.5 180 143-395 1-182 (229)
26 PF00483 NTP_transferase: Nucl 97.5 0.00068 1.5E-08 68.6 10.5 184 143-395 2-192 (248)
27 cd04181 NTP_transferase NTP_tr 97.5 0.0017 3.8E-08 63.9 12.9 139 143-333 1-142 (217)
28 TIGR02092 glgD glucose-1-phosp 97.4 0.0012 2.6E-08 71.4 12.4 158 140-336 2-165 (369)
29 PRK14352 glmU bifunctional N-a 97.4 0.0065 1.4E-07 68.3 18.6 187 140-396 4-192 (482)
30 PRK14353 glmU bifunctional N-a 97.4 0.0061 1.3E-07 67.6 17.7 64 140-219 5-68 (446)
31 PRK00725 glgC glucose-1-phosph 97.4 0.0059 1.3E-07 67.8 17.1 208 137-396 12-225 (425)
32 cd06915 NTP_transferase_WcbM_l 97.4 0.0035 7.6E-08 61.9 13.8 137 143-333 1-142 (223)
33 cd04189 G1P_TT_long G1P_TT_lon 97.4 0.0053 1.2E-07 61.7 15.3 68 142-225 2-72 (236)
34 cd02538 G1P_TT_short G1P_TT_sh 97.4 0.0019 4.1E-08 65.5 12.0 68 142-224 2-72 (240)
35 cd06422 NTP_transferase_like_1 97.4 0.0045 9.7E-08 61.8 14.4 65 143-224 2-69 (221)
36 cd06426 NTP_transferase_like_2 97.3 0.0028 6E-08 63.0 12.5 135 143-331 1-139 (220)
37 PRK14360 glmU bifunctional N-a 97.3 0.0049 1.1E-07 68.3 15.7 63 141-219 2-64 (450)
38 PRK05450 3-deoxy-manno-octulos 97.3 0.008 1.7E-07 60.9 16.0 128 140-324 2-130 (245)
39 PRK02862 glgC glucose-1-phosph 97.3 0.006 1.3E-07 67.8 15.9 145 140-323 3-152 (429)
40 PLN02241 glucose-1-phosphate a 97.3 0.0037 8.1E-08 69.5 13.9 216 139-396 2-232 (436)
41 PRK14358 glmU bifunctional N-a 97.2 0.0036 7.8E-08 70.5 13.4 146 140-342 7-154 (481)
42 PRK14357 glmU bifunctional N-a 97.2 0.0093 2E-07 66.2 16.4 176 142-395 2-179 (448)
43 cd02508 ADP_Glucose_PP ADP-glu 97.2 0.0045 9.7E-08 61.1 12.4 138 143-320 1-144 (200)
44 cd02524 G1P_cytidylyltransfera 97.2 0.0068 1.5E-07 62.1 13.8 151 143-333 1-162 (253)
45 cd06428 M1P_guanylylT_A_like_N 97.1 0.016 3.5E-07 59.4 16.1 176 144-390 2-187 (257)
46 PF01128 IspD: 2-C-methyl-D-er 97.1 0.00048 1E-08 69.9 4.7 65 141-219 1-65 (221)
47 TIGR02623 G1P_cyt_trans glucos 97.1 0.014 3.1E-07 60.0 14.9 159 143-334 2-163 (254)
48 COG1213 Predicted sugar nucleo 97.0 0.0017 3.8E-08 65.9 7.6 66 142-222 5-70 (239)
49 TIGR01208 rmlA_long glucose-1- 96.9 0.018 3.8E-07 62.0 14.9 140 143-333 2-144 (353)
50 cd04198 eIF-2B_gamma_N The N-t 96.9 0.012 2.6E-07 58.9 12.3 132 143-323 3-137 (214)
51 PRK13385 2-C-methyl-D-erythrit 96.9 0.0017 3.6E-08 65.7 5.8 66 141-220 3-68 (230)
52 TIGR00454 conserved hypothetic 96.8 0.0018 3.9E-08 63.7 5.7 61 142-219 2-62 (183)
53 KOG1322 GDP-mannose pyrophosph 96.8 0.021 4.5E-07 60.6 13.6 187 139-394 8-198 (371)
54 TIGR01479 GMP_PMI mannose-1-ph 96.8 0.027 5.8E-07 63.4 15.4 196 143-397 3-211 (468)
55 TIGR02091 glgC glucose-1-phosp 96.8 0.025 5.5E-07 60.9 14.4 61 143-219 1-65 (361)
56 PLN02728 2-C-methyl-D-erythrit 96.7 0.0024 5.2E-08 66.1 6.0 66 139-218 23-88 (252)
57 cd02523 PC_cytidylyltransferas 96.7 0.035 7.6E-07 55.7 14.2 122 143-323 1-126 (229)
58 TIGR01105 galF UTP-glucose-1-p 96.7 0.0038 8.3E-08 66.1 7.2 64 140-219 3-69 (297)
59 PRK14354 glmU bifunctional N-a 96.6 0.077 1.7E-06 59.0 17.5 40 141-183 3-42 (458)
60 cd04182 GT_2_like_f GT_2_like_ 96.6 0.0034 7.4E-08 60.2 5.8 38 141-183 1-38 (186)
61 cd02517 CMP-KDO-Synthetase CMP 96.6 0.043 9.3E-07 55.4 13.9 127 140-323 1-129 (239)
62 cd02513 CMP-NeuAc_Synthase CMP 96.6 0.071 1.5E-06 52.9 15.1 131 140-324 1-137 (223)
63 PF12804 NTP_transf_3: MobA-li 96.5 0.0045 9.7E-08 58.4 6.0 55 143-217 1-55 (160)
64 PLN02917 CMP-KDO synthetase 96.4 0.11 2.3E-06 55.1 16.1 183 140-395 47-237 (293)
65 COG1208 GCD1 Nucleoside-diphos 96.4 0.0079 1.7E-07 65.4 7.6 141 141-334 2-146 (358)
66 PRK13368 3-deoxy-manno-octulos 96.4 0.11 2.4E-06 52.3 15.2 59 140-219 2-61 (238)
67 TIGR03310 matur_ygfJ molybdenu 96.3 0.0063 1.4E-07 58.8 5.7 52 143-211 2-53 (188)
68 COG2266 GTP:adenosylcobinamide 96.3 0.008 1.7E-07 58.5 6.2 61 142-220 2-62 (177)
69 PF14134 DUF4301: Domain of un 96.3 0.088 1.9E-06 58.8 15.0 264 157-461 165-508 (513)
70 PRK00560 molybdopterin-guanine 96.2 0.004 8.7E-08 61.7 3.8 39 140-183 8-47 (196)
71 PRK10122 GalU regulator GalF; 96.2 0.012 2.6E-07 62.4 7.1 64 139-218 2-68 (297)
72 COG1209 RfbA dTDP-glucose pyro 96.1 0.013 2.8E-07 60.9 6.8 120 143-313 3-125 (286)
73 COG0746 MobA Molybdopterin-gua 96.1 0.024 5.1E-07 56.5 8.6 38 140-183 4-41 (192)
74 TIGR02665 molyb_mobA molybdopt 95.9 0.0063 1.4E-07 58.9 3.5 38 141-182 1-38 (186)
75 cd02503 MobA MobA catalyzes th 95.9 0.0061 1.3E-07 58.8 3.3 37 142-183 2-38 (181)
76 TIGR00453 ispD 2-C-methyl-D-er 95.8 0.0064 1.4E-07 60.5 2.9 39 142-183 1-39 (217)
77 PRK02726 molybdopterin-guanine 95.7 0.0083 1.8E-07 59.6 3.6 39 140-183 7-45 (200)
78 COG1211 IspD 4-diphosphocytidy 95.7 0.01 2.2E-07 60.6 4.2 65 140-218 4-68 (230)
79 cd02516 CDP-ME_synthetase CDP- 95.7 0.0078 1.7E-07 59.8 3.3 40 141-183 1-40 (218)
80 TIGR03202 pucB xanthine dehydr 95.7 0.01 2.3E-07 57.9 4.0 37 142-183 2-38 (190)
81 PRK00155 ispD 2-C-methyl-D-ery 95.7 0.0089 1.9E-07 60.1 3.5 41 140-183 3-43 (227)
82 PRK00317 mobA molybdopterin-gu 95.6 0.0096 2.1E-07 58.3 3.6 39 140-182 3-41 (193)
83 TIGR01099 galU UTP-glucose-1-p 95.4 0.023 5E-07 58.2 5.5 62 142-219 2-66 (260)
84 PRK14489 putative bifunctional 95.3 0.016 3.5E-07 63.2 4.0 40 139-182 4-43 (366)
85 PRK14490 putative bifunctional 95.2 0.014 3.1E-07 63.5 3.6 39 140-183 174-212 (369)
86 cd02541 UGPase_prokaryotic Pro 95.2 0.029 6.3E-07 57.7 5.6 61 143-219 3-66 (267)
87 COG0448 GlgC ADP-glucose pyrop 95.1 0.28 6.1E-06 53.6 12.7 200 139-397 4-211 (393)
88 PRK09451 glmU bifunctional N-a 95.1 0.031 6.6E-07 62.4 5.6 63 140-218 5-67 (456)
89 PRK14500 putative bifunctional 95.0 0.022 4.7E-07 61.8 4.1 39 140-183 160-198 (346)
90 PRK09382 ispDF bifunctional 2- 95.0 0.018 3.9E-07 63.1 3.2 42 139-183 4-45 (378)
91 COG0836 {ManC} Mannose-1-phosp 94.8 0.038 8.1E-07 58.7 5.1 198 141-397 2-213 (333)
92 KOG1460 GDP-mannose pyrophosph 94.5 5 0.00011 42.6 19.4 161 142-355 4-172 (407)
93 cd04183 GT2_BcE_like GT2_BcbE_ 94.5 0.023 5.1E-07 56.9 2.5 38 143-183 1-41 (231)
94 PRK15460 cpsB mannose-1-phosph 94.2 0.09 2E-06 59.4 6.5 197 141-397 6-220 (478)
95 PRK13389 UTP--glucose-1-phosph 94.1 0.069 1.5E-06 56.7 5.2 62 142-219 10-74 (302)
96 cd02507 eIF-2B_gamma_N_like Th 93.9 0.12 2.7E-06 51.7 6.4 62 143-220 3-67 (216)
97 TIGR00466 kdsB 3-deoxy-D-manno 93.7 0.19 4.2E-06 51.3 7.5 35 143-183 2-36 (238)
98 cd02518 GT2_SpsF SpsF is a gly 91.4 0.47 1E-05 47.8 6.6 60 143-219 2-62 (233)
99 COG4750 LicC CTP:phosphocholin 88.0 0.39 8.5E-06 47.7 2.8 38 143-183 3-43 (231)
100 COG2068 Uncharacterized MobA-r 85.5 1 2.2E-05 45.1 4.2 39 140-183 5-43 (199)
101 COG1210 GalU UDP-glucose pyrop 84.7 1.3 2.8E-05 46.4 4.7 38 143-183 7-47 (291)
102 TIGR03584 PseF pseudaminic aci 75.4 48 0.001 33.5 12.5 131 143-324 2-134 (222)
103 COG1861 SpsF Spore coat polysa 57.6 20 0.00043 36.7 5.4 64 140-222 3-69 (241)
104 KOG1462 Translation initiation 38.5 33 0.00071 37.8 3.7 66 140-220 9-77 (433)
105 PF10162 G8: G8 domain; Inter 32.2 1.3E+02 0.0027 27.8 6.1 67 535-602 15-83 (125)
106 COG1535 EntB Isochorismate hyd 28.0 2.9E+02 0.0064 27.7 7.9 101 171-294 50-151 (218)
107 PF14969 DUF4508: Domain of un 23.8 63 0.0014 28.9 2.4 30 51-81 59-88 (98)
No 1
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=6.5e-146 Score=1222.51 Aligned_cols=610 Identities=70% Similarity=1.139 Sum_probs=575.6
Q ss_pred hccCCchhhccCcchhhhcccCChhHHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 006923 14 KLGIDGAFADSAPNLKKNLHLLSSEQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTA 93 (625)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gQ~HL~~~~~~~~~~~~ek~~Ll~qL~~id~~~~~~l~~y~~~~ 93 (625)
++.++.....++++|+.++..||+++++|+++|.++||+|||+||++++.+++||++|++||..+|..|++|+..|++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gQ~HL~~~w~~l~~~~~e~~~L~~qL~~ld~~y~g~l~~~~~~~ 81 (615)
T PLN02830 2 ALSVASKSDSSVPSLHSNLALLSPDQRALVRRLLELGQSHLFEHWPEPGVDDDDKRRLLEQVARLDESYPGGLAAYVSNA 81 (615)
T ss_pred CCcccccccccccccccccccCChhHHHHHHHHHHcCcHHHHhhhhccCCCHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 45667777778899999999999999999999999999999999999866799999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCcccccCCCchhhHHHHHHHHhhcceEEEEEcCCccccCCccCCcccCCCcCCCCcch
Q 006923 94 RELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCF 173 (625)
Q Consensus 94 ~~~l~~s~~~~~~~~~~~p~vP~~~~l~~~~~~~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~ 173 (625)
.+++..+..+.++|+.+.|.+|.+..+++++.+..+|++.|+++|+|+|||+|||||||||||++||++||+++++++||
T Consensus 82 ~~~l~~s~~~~~~~~~i~P~vp~~~~~~~~~~~~~~~~~~Gl~~l~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~ 161 (615)
T PLN02830 82 KELLADSKEGVNPFEGWTPSVPEGEVLEYGSEEFVELEEAGLREAGNAAFVLVAGGLGERLGYSGIKVALPTETATGTCY 161 (615)
T ss_pred HHHHhhcccCCCchhhcccCCCccccccccchhhhHHHHHHHHHhCcEEEEEecCCcccccCCCCCCcceecccCCCCcH
Confidence 99998765677899999987788888888887778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCC
Q 006923 174 LQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPK 253 (625)
Q Consensus 174 lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~ 253 (625)
||++++||+++|+++.+...+..+.||||||||++||++|++||++|+|||++++||+||+|+++||+++++|++++++.
T Consensus 162 lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~ 241 (615)
T PLN02830 162 LQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPN 241 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCC
Confidence 99999999999999875422233589999999999999999999999999999999999999999999888899999555
Q ss_pred CCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeeeeccCCccCccceE
Q 006923 254 NKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (625)
Q Consensus 254 ~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~~~~DP~~lG~~~~~~~~~~~kvv~r~~~E~vG~i 333 (625)
++++++|+||||||+|.+|++||+|++|+++|+||+|||||||+|++.+||.|||||+.++++|++|||+|+|+|++|++
T Consensus 242 d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~~E~vGvi 321 (615)
T PLN02830 242 DPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKAIPAALGVSATKGFDMNSLAVPRKAKEAIGAI 321 (615)
T ss_pred CCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcccHHHhHHHHhcCCceEEEEEECCCCcccceE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCCCCCCccceeeEEEehhhhHHHHhhccCccccccCCcccCCC
Q 006923 334 TRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDAS 413 (625)
Q Consensus 334 ~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpK~~d~~ 413 (625)
|++++.||+..++||||+|++++++.+++|+|++.+++||++|||||||+|++|++|+++|+++.+.||+||||||.|++
T Consensus 322 ~~~~~~dG~~l~~vVEYse~~~ll~~a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~~l~~~~~~lp~ivNpK~~d~~ 401 (615)
T PLN02830 322 AKLTHKDGREMVINVEYNQLDPLLRATGHPDGDVNDETGYSPFPGNINQLILKLGPYVKELAKTGGVIEEFVNPKYKDAT 401 (615)
T ss_pred EEEecCCCCeeeEEEeecccCHHHHhccCCCcccccccccccCCCCceeeEeeHHHHHHHHHhCCCccceeccCcccCCC
Confidence 99999999987788999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred CCcccCchhHhHhhccccccCCCCCceeEEEeeccceeecccCCCccc-ccCCCCCCCCChhhHHHHHHHHHHHHHHHcC
Q 006923 414 KTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDA-AKVPKGNPYHSATSGEMAIYCANSLILRKAG 492 (625)
Q Consensus 414 ~~~~~~~~rLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~-~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~G 492 (625)
++.|+.++|||||||||++.+..++++||++++||.+|+||||+..+| +|+++|+|++||++++.|+|+.++++|+.+|
T Consensus 402 ~~v~q~~trle~~mq~f~~~~~~~~~vg~~v~~~~~~f~PVKn~~s~a~~k~~~~~~~~~~~s~e~d~y~~~~llL~~s~ 481 (615)
T PLN02830 402 KTAFKSPTRLECMMQDYPKTLPPSAKVGFTVFDNWLAYSPVKNSPADGAAKVPEGNPTHSATSGEMAIYGANCLILRKAG 481 (615)
T ss_pred CceeecchHHHHHHHHHhhhcCcccccCceecCchheeccccCChHHhhhhcccCCCccCcchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999888899999899999999999996666 6679999999999999999999999999999
Q ss_pred CcccCCccc-ccCCeeecCCCeEEEcCCCCCCHHHHhhhc-CCCCccCCCceEEEEeceEEecCeEEEeEEEEEcCCCCe
Q 006923 493 AQVDDPVQE-VFNGQEVEVWPRLTWKPKWGLTFSEIKNKV-SGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAE 570 (625)
Q Consensus 493 ~~v~~~~~~-~~~g~~~~~~P~i~l~p~~~~~~~~~~~k~-~~~~~i~~~s~L~v~G~~~~~~~v~l~G~liI~a~~g~~ 570 (625)
+.+.++... .++++.++.+|+|.|+|.|+++++++++|| +++|+|+++|+|+|+|+++||+||+|||+|+|.|++|++
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~P~I~L~p~f~~~~~~~~~k~~~~~~si~~~s~L~v~G~~~~~~~v~LdG~viI~a~~~~~ 561 (615)
T PLN02830 482 ADVEEPVEDVVFNGIEVEVGPRIVLKPAFALTFSELKKKVAPGSVKISQRSTLVLEGADIVIENLSLDGALVVRAVPGAE 561 (615)
T ss_pred CccccCccccccCCcccCCCCeEEECchhhhHHHHHHHHhcCCCCcccCCCeEEEEeeeEEecCeEEEEEEEEEcCCCCe
Confidence 988765543 688899999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred eEeCC-eeEccceeEeeCCCCCCCCcccceeccceeeeeeeEEEEecCCCccccC
Q 006923 571 VRVGG-KVQNKGWTLEPVDHKDTSVPEEIRIRGFKINKLEQLERSYSEPGKFSLK 624 (625)
Q Consensus 571 ~~i~~-~v~N~g~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~~~~~g~~~~~ 624 (625)
|+|++ +|+|+||+|++++ .|+++||++|||||+++|.|+.++.|++||+|+|+
T Consensus 562 ~~i~g~~v~N~g~~~~~~~-~~~~~~~~~~irg~~~~~~e~~~~~~~~~g~~~~~ 615 (615)
T PLN02830 562 VTVGGLRVKNKGWTWEPVD-KGTSAPEEIRIRGFVIKKVETAELVFDKPGKYTVP 615 (615)
T ss_pred EEecCeEEecCCcEEEecC-CCCCcchhhhhcceeEeeeeeEEEEecCCCceeCC
Confidence 99988 9999999999999 67789999999999999999999999999999985
No 2
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=1.8e-96 Score=804.13 Aligned_cols=448 Identities=24% Similarity=0.339 Sum_probs=383.5
Q ss_pred hHHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCc
Q 006923 38 EQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTG 117 (625)
Q Consensus 38 ~~~~l~~~L~~~gQ~HL~~~~~~~~~~~~ek~~Ll~qL~~id~~~~~~l~~y~~~~~~~l~~s~~~~~~~~~~~p~vP~~ 117 (625)
+.++++++|.++||+|||+||++++ ++||++|++||.++|+.+ +. +.+++++. +. ..+++.+.| +|++
T Consensus 21 ~~~~l~~~l~~~gQ~HLl~~w~~ls--~~e~~~L~~qL~~iD~~~---l~---~~~~~~~~-~~--~~~~~~i~P-~p~~ 88 (493)
T PLN02435 21 PPQALLERLKDYGQEDAFALWDELS--PEERDLLVRDIESLDLPR---ID---RIIRCSLR-SQ--GLPVPAIEP-VPEN 88 (493)
T ss_pred cHHHHHHHHHHcChHHHHHhhhhCC--HHHHHHHHHHHHhcCHHH---HH---HHHHHHhh-cc--CCchhccCC-CChh
Confidence 4557999999999999999999965 899999999999999754 22 33444443 21 236677777 5776
Q ss_pred ccccCCC---chhhHHHHHHHHhh--cceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhc
Q 006923 118 EVLKFGD---DTFINYEQAGVKEA--KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLA 192 (625)
Q Consensus 118 ~~l~~~~---~~~~~~~~~G~~~l--~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~ 192 (625)
...++.. ....+|+++|+++| +|||||+||||||||||+++||+++|+++++++||||++++||+++|+++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~- 167 (493)
T PLN02435 89 SVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQA- 167 (493)
T ss_pred hccchhccChHHHHHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhh-
Confidence 6555532 45578999999999 49999999999999999999999999999999999999999999999998653
Q ss_pred cC----CcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchh
Q 006923 193 EG----KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDV 268 (625)
Q Consensus 193 ~g----~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi 268 (625)
+| ....||||||||+.||++|++||++|+|||++++||+||+|+++||++ .+|++++ +++++++|+|+||||+
T Consensus 168 ~~~~~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~-~dg~i~l--~~~~~i~~~P~GnGgi 244 (493)
T PLN02435 168 SSEGPGRPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVS-KDGKFIM--ETPFKVAKAPDGNGGV 244 (493)
T ss_pred cccccCCCCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceEC-CCCCccc--CCCcccccCCCCCcHH
Confidence 22 234899999999999999999999999999999999999999999995 8999999 8899999999999999
Q ss_pred hHHHhhcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeeeeccCC-ccCccceEEEEecCCCceeEEE
Q 006923 269 HALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVIN 347 (625)
Q Consensus 269 ~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~~~~DP~~lG~~~~~~~~~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~n 347 (625)
|.||++||+|++|+++|+|||||+||||+|++++||.|||||+.++++|++|||+|+ |.|++|++|+. ..||++.+
T Consensus 245 y~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~-~~~g~~~v-- 321 (493)
T PLN02435 245 YAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRR-GKGGPLTV-- 321 (493)
T ss_pred HHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEe-cCCCCEEE--
Confidence 999999999999999999999999999999999999999999999999999999975 89999999975 36898876
Q ss_pred EeccCccHHHHhcCCCC-CCCCCCCCCCCCccceeeEEEehhhhHHHHhhccCccccccCCc---ccCCCCCcccCchhH
Q 006923 348 VEYNQLDPLLRATGFPD-GDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASKTSFKSSTRL 423 (625)
Q Consensus 348 VEYsel~~~l~~~~~~~-g~l~~~~gf~~f~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpK---~~d~~~~~~~~~~rL 423 (625)
|||+||+++++.+++++ |++. +.+||||||||++++++++.+.....+|.|+..| |.|.. ...+||
T Consensus 322 vEYsEl~~~~~~~~~~~~g~L~------~~~gnI~~h~fs~~fL~~~~~~~~~~l~~H~A~Kkip~~~~~----~ngiK~ 391 (493)
T PLN02435 322 VEYSELDQAMASAINQQTGRLR------YCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHGY----TMGLKL 391 (493)
T ss_pred EEeccCCHHHHhccCccccccc------cchhhHHHhhccHHHHHHHHHhhhhcCCceeeccccCccCCC----cceEEe
Confidence 99999999999888765 7665 5589999999999999988754444589998876 55533 257899
Q ss_pred hHhhccccccCCCCCceeEEEeeccceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCccccc
Q 006923 424 ECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVF 503 (625)
Q Consensus 424 E~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~G~~v~~~~~~~~ 503 (625)
|+||||+ |+.+.++++++|+|++|||||||+++.. .|||+|||.+|+++|++||+++|+.+.+....
T Consensus 392 E~FiFDv---f~~a~~~~~~eV~R~~EFaPlKN~~g~~--------~Dsp~tar~~l~~~~~~wl~~aG~~~~~~~~~-- 458 (493)
T PLN02435 392 EQFIFDA---FPYAPSTALFEVLREEEFAPVKNANGSN--------FDTPESARLLVLRLHTRWVVAAGGFLTHSVPL-- 458 (493)
T ss_pred eeeeecc---hhhcCceEEEEEchhhccCcccCCCCCC--------CCCHHHHHHHHHHHHHHHHHHcCCEecCCccc--
Confidence 9999998 4556678999999999999999999864 79999999999999999999999987532110
Q ss_pred CCeeecCCCeEEEcCCCCCCHHHH-hhh
Q 006923 504 NGQEVEVWPRLTWKPKWGLTFSEI-KNK 530 (625)
Q Consensus 504 ~g~~~~~~P~i~l~p~~~~~~~~~-~~k 530 (625)
....++++|.++|+ |+.++.+ +.|
T Consensus 459 ~~~~vEisP~~sY~---gE~L~~~~~~~ 483 (493)
T PLN02435 459 YATGVEVSPLCSYA---GENLEAICRGR 483 (493)
T ss_pred cCCcEEeCCceeeC---CCCchhhcCCC
Confidence 01357899999999 8888776 444
No 3
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=5.1e-92 Score=765.20 Aligned_cols=436 Identities=17% Similarity=0.194 Sum_probs=369.5
Q ss_pred ccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCCch-hhHHHHHHHHhhcceEEEEEcCCccccCCccCCccc
Q 006923 84 GGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDT-FINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVA 162 (625)
Q Consensus 84 ~~l~~y~~~~~~~l~~s~~~~~~~~~~~p~vP~~~~l~~~~~~-~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~ 162 (625)
.++..|.+.+.++++.. .+..+|+.+.|+ +++...+|++.. ...-.....++|+|+|||+|||||||||||++||++
T Consensus 24 ~e~~~f~~~~~~~~~~~-~~~i~~~~i~~~-~~~~~~~~~~l~~~~~~~~~~~~~L~k~avlkLnGGlGTrmG~~~PKs~ 101 (469)
T PLN02474 24 NEKSGFISLVSRYLSGE-AQHIEWSKIQTP-TDEVVVPYDKLAPVPEDPEETKKLLDKLVVLKLNGGLGTTMGCTGPKSV 101 (469)
T ss_pred HHHHHHHHHHHHHHhCC-CCeecHHHccCC-chhhCcChhhccccccchhHHHHHHhcEEEEEecCCcccccCCCCCcee
Confidence 34567778888887754 356789988874 566666664421 111122356788999999999999999999999999
Q ss_pred CCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEe
Q 006923 163 LPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLD 242 (625)
Q Consensus 163 lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~ 242 (625)
+|+ ++++||||++++||+++++.|+ +.|||+||||+.||++|++||++|+|| +.+|++|+|+++||++
T Consensus 102 i~v--~~~~sfldl~~~qi~~l~~~~g-------~~vPl~iMtS~~T~~~T~~~l~k~~~~---~~~i~~F~Q~~~P~l~ 169 (469)
T PLN02474 102 IEV--RNGLTFLDLIVIQIENLNKKYG-------CNVPLLLMNSFNTHDDTQKIVEKYTNS---NIEIHTFNQSQYPRVV 169 (469)
T ss_pred EEc--CCCCcHHHHHHHHHHHHHHHcC-------CCceEEEECCCchhHHHHHHHHHcCCC---ccceEEEecCceeeEe
Confidence 997 7999999999999999999986 489999999999999999999999997 4689999999999996
Q ss_pred cCCCceecC-CCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeeee
Q 006923 243 DNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLA 321 (625)
Q Consensus 243 ~~~g~~~l~-~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~~~~DP~~lG~~~~~~~~~~~kv 321 (625)
.+|++.+. +....+.+|+|+||||+|.+|++||+|++|+++|+||+||+|||| |++++||.||||++.++++|+|||
T Consensus 170 -~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDN-Lga~vDp~~lg~~~~~~~e~~~ev 247 (469)
T PLN02474 170 -ADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDN-LGAIVDLKILNHLIQNKNEYCMEV 247 (469)
T ss_pred -cCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCc-cccccCHHHHHHHHhcCCceEEEE
Confidence 56666662 111235669999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ccCC-ccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCCCCCCccceeeEEEehhhhHHHHhhccCc
Q 006923 322 VPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGA 400 (625)
Q Consensus 322 v~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNinn~~~~l~~l~~~l~~~~~~ 400 (625)
|+|+ +.+++|++|.. +|++++ +||+|+++..+.... |.. .|++| |||||||+|++++++++.....
T Consensus 248 ~~Kt~~d~kgG~l~~~---dgk~~l--vEysqvp~e~~~~f~--~~~----kf~~f--Ntnn~w~~L~~l~~~~~~~~l~ 314 (469)
T PLN02474 248 TPKTLADVKGGTLISY---EGKVQL--LEIAQVPDEHVNEFK--SIE----KFKIF--NTNNLWVNLKAIKRLVEADALK 314 (469)
T ss_pred eecCCCCCCccEEEEE---CCEEEE--EEEecCCHHHHHhhc--ccc----cceee--eeeeEEEEHHHHHHHhhcCCCC
Confidence 9986 56667778865 999988 999999998765432 222 26655 9999999999999998764455
Q ss_pred cccccCCcccCCCCCcccCchhHhHhhccccccCCCCCceeEEEeeccceeecccCCCcccccCCCCCCCCChhhHHHHH
Q 006923 401 IKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAI 480 (625)
Q Consensus 401 lp~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl 480 (625)
++.++|||..|+. +..|||++|||++++|+++ ..++|||+ ||+||||+++. .++|+|+
T Consensus 315 ~~~I~n~k~~~g~-----kv~q~Et~ig~ai~~f~~~---~~v~VpR~-rF~PVK~~~dl-------------l~~rsdl 372 (469)
T PLN02474 315 MEIIPNPKEVDGV-----KVLQLETAAGAAIRFFDNA---IGINVPRS-RFLPVKATSDL-------------LLVQSDL 372 (469)
T ss_pred ceeecCCCCCCCe-----eEEEeHHHHHHHHHhCCCc---eEEEEchh-hccCCCCCCCH-------------HHHHHHH
Confidence 6678899988743 5789999999999998643 45699995 79999999875 5999999
Q ss_pred HHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEcCCCCCCHHHHhhhcCCCCccCCCceEEEEeceEEecCeEEEeE
Q 006923 481 YCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGA 560 (625)
Q Consensus 481 ~~~~~~~L~~~G~~v~~~~~~~~~g~~~~~~P~i~l~p~~~~~~~~~~~k~~~~~~i~~~s~L~v~G~~~~~~~v~l~G~ 560 (625)
|.++++|+..+|++.. ...|.|.|+|.| .++++|.+||+++|+|.+++||+|+|||+||+||+|+|+
T Consensus 373 y~l~~~~l~~~~~~~~------------~~~p~IeL~~~f-~~v~~f~~rf~~iPsl~~~d~LtV~Gdv~fG~~v~l~G~ 439 (469)
T PLN02474 373 YTLVDGFVIRNKARTN------------PSNPSIELGPEF-KKVANFLSRFKSIPSIVELDSLKVSGDVWFGSGIVLKGK 439 (469)
T ss_pred HHhccCeEEecCcccC------------CCCCcEEECccc-ccHHhHHHhcCCCCCcccCCeEEEeeeeEECCCcEEEEE
Confidence 9999999999887642 246889999995 699999999999999999999999999999999999999
Q ss_pred EEEEcCCCCeeEeCC--eeEcccee
Q 006923 561 LIIDSVDDAEVRVGG--KVQNKGWT 583 (625)
Q Consensus 561 liI~a~~g~~~~i~~--~v~N~g~~ 583 (625)
|+|.|++|.+++||+ +++|+-+.
T Consensus 440 v~i~~~~~~~~~ip~g~~l~~~~~~ 464 (469)
T PLN02474 440 VTITAKSGVKLEIPDGAVLENKDIN 464 (469)
T ss_pred EEEEcCCCCeeecCCCcEecceeec
Confidence 999999999999986 99998654
No 4
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=5.2e-91 Score=726.61 Aligned_cols=315 Identities=68% Similarity=1.107 Sum_probs=300.0
Q ss_pred eEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 006923 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (625)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (625)
+|||+||||||||||+++||+++|+++++++||||++++||+++|+++.+ +....||||||||+.||++|++||++|
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~---~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKK---GEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhc---cCCCceeEEEECCCchhHHHHHHHHHC
Confidence 58999999999999999999999999999999999999999999998863 223589999999999999999999999
Q ss_pred CCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCcccc
Q 006923 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (625)
Q Consensus 221 ~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~~ 300 (625)
+|||++++||+||+|+++||+++.+|++++..+++++++|+|+||||||.||++||+|++|+++|+||++|+||||+|++
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 99999999999999999999977889984223788999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhhcCCceeeeeccCCccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCCCCCCccce
Q 006923 301 KAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (625)
Q Consensus 301 ~~DP~~lG~~~~~~~~~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNi 380 (625)
++||.||||++++++||++|||+|+|+|++|++|++++.||+++|+|||||||++++++++.++|+..+.+||++|||||
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~gNi 237 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFPGNI 237 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccCCCee
Confidence 99999999999999999999999999999999999888899999999999999999999999989988889999999999
Q ss_pred eeEEEehhhhHHHHhhccCccccccCCcccCCCCCcccCchhHhHhhccccccCCCCCceeEEEeeccceeecccCCC
Q 006923 381 NQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNP 458 (625)
Q Consensus 381 nn~~~~l~~l~~~l~~~~~~lp~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~ 458 (625)
|+|+|+|++|.+.|+++.+.+|+|+||||.|.+++.+++|+||||||||++++|+.+.++++++|+||.|||||||+.
T Consensus 238 ~~~~f~l~~~~~~l~~~~~~~~~~~n~ky~d~~~~~~~~p~rlE~~m~D~~~~f~~~~~~~~~~~~r~~~fsP~KN~~ 315 (315)
T cd06424 238 NQLVFSLGPYMDELEKTKGAIPEFINPKYKDATKTAFKSPTRLECMMQDIPLLFEEDYRVGFTVLDRWLCFSPVKNNL 315 (315)
T ss_pred eeEEEeHHHHHHHHhhccccCeeeecCCcccCCCCeecCchHHHHHHHHHHHhhcccceeEEEEEchhhcccccCCCC
Confidence 999999999999999988999999999999999999999999999999999999989999999999999999999974
No 5
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=7.7e-90 Score=754.06 Aligned_cols=454 Identities=22% Similarity=0.255 Sum_probs=374.0
Q ss_pred HHHHHHCCCcccccccccCCCCHHHHHHHHHHH-hhcCCCCCccHHHHHHHHHHHHhhccCC-----CCCCCCCCCCCCC
Q 006923 43 AKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQV-AKLNSSYPGGLKSYIKTARELLADSKAG-----KNPFDGFTPSVPT 116 (625)
Q Consensus 43 ~~~L~~~gQ~HL~~~~~~~~~~~~ek~~Ll~qL-~~id~~~~~~l~~y~~~~~~~l~~s~~~-----~~~~~~~~p~vP~ 116 (625)
+++|.++||+|||+||++++ ++||++|++|| +++....+..+...++.+....+.+... ...-+.+.| +|.
T Consensus 2 ~~~l~~~gQ~hl~~~~~~l~--~~e~~~l~~ql~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~ 78 (482)
T PTZ00339 2 LKVLTGDGQDHLREALKRRS--EGEFTPLATQILSSLTNVDFKHRNAVLEPKLEEYNAEAPVGIDIDSIHNCNIEP-PNN 78 (482)
T ss_pred hhhhhhcCHHHHHHHHHhCC--HHHHHHHHHHHHHHhhccCHHHHHHHHHHHhhhhhcccccccccccccccccCC-CCc
Confidence 57899999999999999965 99999999999 6333222344555666554332221110 001123444 455
Q ss_pred cccccC--CCchhhHHHHHHHHhhc--ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhc
Q 006923 117 GEVLKF--GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLA 192 (625)
Q Consensus 117 ~~~l~~--~~~~~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~ 192 (625)
....+. ..++..+|+++|+++|+ |+|+|+||||+|||||++.||+++|+.+.+++||||++++||++++.++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~- 157 (482)
T PTZ00339 79 NTFIDIYEKEKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAV- 157 (482)
T ss_pred ccccccccCHHHHHHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcc-
Confidence 433332 23567889999999998 7999999999999999999999999988899999999999999999998643
Q ss_pred cC--CcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhH
Q 006923 193 EG--KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHA 270 (625)
Q Consensus 193 ~g--~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~ 270 (625)
+| ....||||||||+.||+.|++||++|+|||++++||+||+|+++||++.++|++++ +++++++|+|+||||+|.
T Consensus 158 ~~~~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill--~~~~~i~~~P~GnGgiy~ 235 (482)
T PTZ00339 158 SGGGDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIM--SSQGSLCTAPGGNGDVFK 235 (482)
T ss_pred cccccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecCCcceEecCCCCccc--CCCCceeeCCCCCcHHHH
Confidence 22 12479999999999999999999999999999999999999999999877899999 778899999999999999
Q ss_pred HHhhcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCC-ceeeeeccCCccCccceEEEEecCCCceeEEEEe
Q 006923 271 LLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQY-HVNSLAVPRKAKEAIGGITRLTHADGRSMVINVE 349 (625)
Q Consensus 271 aL~~sGlL~~l~~~G~~yi~v~~vDN~L~~~~DP~~lG~~~~~~~-~~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVE 349 (625)
+|++||+|++|+++|+||+||+||||+|++++||.||||++++++ +++.+||.|.|.|++|++|++ ||++.| ||
T Consensus 236 aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~EkvG~~~~~---~g~~~v--vE 310 (482)
T PTZ00339 236 ALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLK---DYEWQV--VE 310 (482)
T ss_pred HHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeeecCCCCCceeEEEEe---CCcccE--EE
Confidence 999999999999999999999999999999999999999999999 999999988899999999986 898877 99
Q ss_pred ccCccHHHHhcCCCC-CCCCCCCCCCCCccceeeEEEehhhhHHHHhh-ccCccccccCCc---ccCCCCCcccCchhHh
Q 006923 350 YNQLDPLLRATGFPD-GDVNCETGYSPFPGNINQLILELGPYMEELKK-TGGAIKEFVNPK---YKDASKTSFKSSTRLE 424 (625)
Q Consensus 350 Ysel~~~l~~~~~~~-g~l~~~~gf~~f~gNinn~~~~l~~l~~~l~~-~~~~lp~~vnpK---~~d~~~~~~~~~~rLE 424 (625)
|+||++.++....++ |.+ .+++||||||||++++++++++. ....||.|++.| |.|... +.+..+|||
T Consensus 311 YsEi~~~~~~~~~~~~g~l------~f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~Kkip~~~~~~-~~png~K~E 383 (482)
T PTZ00339 311 YTEINERILNNDELLTGEL------AFNYGNICSHIFSLDFLKKVAANRLYESTPYHAARKKIPYINGPT-DKTMGIKLE 383 (482)
T ss_pred EeccChhhhhcccccCCee------cccccceEEEEEEHHHHHHHhhhhhhhcCCceeeccccCeeCCCC-CCcceeeeh
Confidence 999999988765442 333 35689999999999999988753 234589998876 566332 334678999
Q ss_pred HhhccccccCCCCCceeEEEeeccceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccC
Q 006923 425 CMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFN 504 (625)
Q Consensus 425 ~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~G~~v~~~~~~~~~ 504 (625)
+||||++. .+.++++++|+|++|||||||+++.. .|||+|||++|+++|++||+++|+.+.+... ..
T Consensus 384 ~FiFDvf~---~~~~~~~~ev~R~~eFsPlKNa~g~~--------~d~p~tar~~l~~~~~~wl~~ag~~~~~~~~--~~ 450 (482)
T PTZ00339 384 AFIFDIFR---YAKNVLILEVDREDEFAPIKNADGAA--------ADTILNAQKLLLSLHTRWLEAALETVAGNPR--EG 450 (482)
T ss_pred hhhhhHHH---hccccceeeechhhccccccCCCCCC--------CCCHHHHHHHHHHHHHHHHHHCCCeeecccc--CC
Confidence 99999844 45678999999999999999999864 7999999999999999999999997743210 01
Q ss_pred CeeecCCCeEEEcCCCCCCHHHHhhh
Q 006923 505 GQEVEVWPRLTWKPKWGLTFSEIKNK 530 (625)
Q Consensus 505 g~~~~~~P~i~l~p~~~~~~~~~~~k 530 (625)
+..++++|+|+|+ |+.++.+++|
T Consensus 451 ~~~~Eisp~~sy~---ge~l~~~~~~ 473 (482)
T PTZ00339 451 LNLCEISPLVSYG---GEGLFQYPGK 473 (482)
T ss_pred CceEEecCcceeC---CCCcccccCc
Confidence 2468999999999 8888776554
No 6
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-86 Score=687.85 Aligned_cols=433 Identities=19% Similarity=0.255 Sum_probs=380.1
Q ss_pred ccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCCchhhHHHHHHHHhhcceEEEEEcCCccccCCccCCcccC
Q 006923 84 GGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVAL 163 (625)
Q Consensus 84 ~~l~~y~~~~~~~l~~s~~~~~~~~~~~p~vP~~~~l~~~~~~~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~l 163 (625)
.++..|+..++|+|.+.. ....|+.+.+| |++.+++|++.. .. ..+..+|+|+||++|+||+||.|||.+||+++
T Consensus 52 ~e~~~F~~Lf~RyL~~~~-~~~~wdkI~~p-~~d~vv~y~~i~--~~-~~~~~~L~KLavlKLNGGlGttmGc~gPKS~i 126 (498)
T KOG2638|consen 52 TELSGFFNLFSRYLREKA-PTIDWDKIRPP-PEDAVVPYDDIK--NV-ELSKSLLNKLAVLKLNGGLGTTMGCKGPKSVI 126 (498)
T ss_pred hhHHHHHHHHHHHHhccC-CccchhhccCC-Chhhcccccccc--ch-hhHHHhhhheEEEEecCCcCCccccCCCceeE
Confidence 467789999999997654 57789999885 777888887643 23 67888999999999999999999999999999
Q ss_pred CCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEec
Q 006923 164 PAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDD 243 (625)
Q Consensus 164 pv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~ 243 (625)
+| ++|.||||+.++||+.|+++|+ +++||++|||++|+++|.+++++|.+ .+.+|++|.|+++|+++.
T Consensus 127 eV--R~g~tFLDL~V~QIe~LN~~Y~-------~dVPlvLMNSfnTdedT~kil~ky~~---~kv~i~TF~QS~~PRi~~ 194 (498)
T KOG2638|consen 127 EV--RDGLTFLDLTVRQIENLNKTYN-------VDVPLVLMNSFNTDEDTQKILKKYAG---SKVDIKTFNQSKYPRIDK 194 (498)
T ss_pred EE--cCCCchhHHHHHHHHHHHhhcC-------CCCCEEEecccccchHHHHHHHHhcC---CceeEEEeccccCCcccc
Confidence 99 8999999999999999999997 58999999999999999999999987 478899999999999988
Q ss_pred CCCceecC-CCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeeeec
Q 006923 244 NDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAV 322 (625)
Q Consensus 244 ~~g~~~l~-~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~~~~DP~~lG~~~~~~~~~~~kvv 322 (625)
++..|+.+ ..+....+||||||||+|.+|+.||+||+|+++|+||+||+|+|| ||+++|..+|.+++.++++|.|||+
T Consensus 195 etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDN-LGAtvDL~ILn~~i~~~~ey~MEvT 273 (498)
T KOG2638|consen 195 ETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDN-LGATVDLNILNHVINNNIEYLMEVT 273 (498)
T ss_pred ccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEecccc-ccceeeHHHHHHHhcCCCceEEEec
Confidence 87777765 345567899999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCC---CCCCccceeeEEEehhhhHHHHhhccC
Q 006923 323 PRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETG---YSPFPGNINQLILELGPYMEELKKTGG 399 (625)
Q Consensus 323 ~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~g---f~~f~gNinn~~~~l~~l~~~l~~~~~ 399 (625)
+||.+|.+||++. .-+|+.+. +||.+. |+.++.+|++ |++| ||||+|++|++++++++....
T Consensus 274 dKT~aDvKgGtLi--~y~G~lrl--LEiaQV---------P~ehv~eFkS~kkFkif--NTNNlWinLkavKrlve~~~l 338 (498)
T KOG2638|consen 274 DKTRADVKGGTLI--QYEGKLRL--LEIAQV---------PKEHVDEFKSIKKFKIF--NTNNLWINLKAVKKLVEENAL 338 (498)
T ss_pred ccchhhcccceEE--eecCEEEE--EEeccC---------ChhHhhhhccceeEEEe--ccCCeEEehHHHHHHhhcCcc
Confidence 9999999999873 34677776 776555 4456777766 7777 999999999999999998888
Q ss_pred ccccccCCcccCCCCCcccCchhHhHhhccccccCCCCCceeEEEeeccceeecccCCCcccccCCCCCCCCChhhHHHH
Q 006923 400 AIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMA 479 (625)
Q Consensus 400 ~lp~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~d 479 (625)
.|++|+|||..+.. ..++|||+++++++++|+++ .|+ .||| +||.|||+++|+. ..+++
T Consensus 339 ~meIi~N~kti~~~----~~viQleTa~GaaIk~F~na--~gv-~VpR-sRFlPVKt~sDLl-------------Lv~S~ 397 (498)
T KOG2638|consen 339 NMEIIVNPKTIDRG----IEVIQLETAAGAAIKFFDNA--IGV-NVPR-SRFLPVKTCSDLL-------------LVMSN 397 (498)
T ss_pred cceeecChhhccCC----ceEEEEhhhhhHHHHhCCCc--eee-eccc-cccccccccccce-------------eeecc
Confidence 99999999988842 26899999999999999875 364 8999 9999999999986 66777
Q ss_pred HHHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEcCCCCCCHHHHhhhcCCCCccCCCceEEEEeceEEecCeEEEe
Q 006923 480 IYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNG 559 (625)
Q Consensus 480 l~~~~~~~L~~~G~~v~~~~~~~~~g~~~~~~P~i~l~p~~~~~~~~~~~k~~~~~~i~~~s~L~v~G~~~~~~~v~l~G 559 (625)
||.+.+.-|+. ++. +..+..|.|.|+|+| .++++|..||+++|+|.+++||+|+|+|+||+||+|+|
T Consensus 398 Ly~ld~Gsl~l------~~~------r~~~t~P~vkLg~~F-~kv~~f~~rfp~iP~ileLdhLtVsGdV~FGknV~LkG 464 (498)
T KOG2638|consen 398 LYDLDNGSLTL------SPS------RFGPTPPLVKLGSEF-KKVEDFLGRFPGIPDILELDHLTVSGDVWFGKNVSLKG 464 (498)
T ss_pred eeeccCCeEEe------chh------hcCCCCCeeecchhh-hHHHHHHhcCCCCCccceeceEEEeccEEeccceEEee
Confidence 77776532221 221 345678999999996 68999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCeeEeCC--eeEcccee
Q 006923 560 ALIIDSVDDAEVRVGG--KVQNKGWT 583 (625)
Q Consensus 560 ~liI~a~~g~~~~i~~--~v~N~g~~ 583 (625)
+|||.|++|.+|+||+ ++||+-+.
T Consensus 465 tViIia~~~~~i~IP~gsVLEn~~v~ 490 (498)
T KOG2638|consen 465 TVIIIANEGDRIDIPDGSVLENKIVS 490 (498)
T ss_pred EEEEEecCCCeeecCCCCeeecceEe
Confidence 9999999999999987 99999765
No 7
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=5.3e-84 Score=700.43 Aligned_cols=414 Identities=26% Similarity=0.345 Sum_probs=318.5
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccCCCchhhHH-HHHHHHhhcceEEEEEcCCccccCCccCCcccCC
Q 006923 86 LKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINY-EQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALP 164 (625)
Q Consensus 86 l~~y~~~~~~~l~~s~~~~~~~~~~~p~vP~~~~l~~~~~~~~~~-~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lp 164 (625)
+..|++.+++++.++.....+|+.+.++.|. ...++++.....| ...+..+++|+|||+||||||||||+++||+++|
T Consensus 2 ~~~f~~l~~~yl~~~~~~~~~~~~i~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~~~ 80 (420)
T PF01704_consen 2 LDSFFSLFRRYLSESKSHQIDWDKIMPPPPE-EVVDYESLKEYEWDEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGLIP 80 (420)
T ss_dssp HHHHHHHHHHHHHCCCCCS--GGGEEE-GTG-CEEEHHHHHHSCHHHHHHHHHTTCEEEEEEEESBSGCCTESSBGGGSE
T ss_pred hHHHHHHHHHHHHhcccCCcccccCCCCChh-hcCChhHhcccccccchhHHhhCCEEEEEEcCcccCccCCCCCCccee
Confidence 5689999999998756677889999886444 4455544332234 2234445569999999999999999999999999
Q ss_pred CcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecC
Q 006923 165 AETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDN 244 (625)
Q Consensus 165 v~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~ 244 (625)
+ ++++||||++++||+++++.|+ +.|||+||||+.||++|++||++ |||++.+ |++|+|+++||++ .
T Consensus 81 v--~~~~t~ldl~~~qi~~l~~~~~-------~~iPl~iMtS~~T~~~T~~~l~k--yfg~~~~-v~~F~Q~~~P~i~-~ 147 (420)
T PF01704_consen 81 V--REGKTFLDLIVEQIEALNKKYG-------VDIPLYIMTSFNTHEDTRKFLEK--YFGLDVD-VFFFKQSKLPAID-A 147 (420)
T ss_dssp E--ETTEEHHHHHHHHHHHHHHHHT-------TT-EEEEEEETTTHHHHHHHHHH--GCGSSCC-EEEEEE-EEEEEE-T
T ss_pred c--CCcccHHHHHHHHHHHHhcccc-------ccceEEEecCcccHHHHHHHHHH--hcCCCcc-eEEEeecCcceEe-C
Confidence 9 7899999999999999999986 48999999999999999999999 9999877 9999999999997 5
Q ss_pred CCceecCCCC--C-CccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeeee
Q 006923 245 DARLAMDPKN--K-YRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLA 321 (625)
Q Consensus 245 ~g~~~l~~~~--~-~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~~~~DP~~lG~~~~~~~~~~~kv 321 (625)
+|++++..+. + ....|+|+||||+|.+|++||+|++|+++|+||+||+|||| |++++||.||||+++++++|++||
T Consensus 148 d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~Dp~~lG~~~~~~~~~~~ev 226 (420)
T PF01704_consen 148 DGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVDPVFLGYMIEKNADFGMEV 226 (420)
T ss_dssp TTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-HHHHHHHHHTT-SEEEEE
T ss_pred CCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccCHHHHHHHHhccchhheee
Confidence 6666662211 1 13469999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ccCC-ccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCCCCCCccceeeEEEehhhhHHHHhhccCc
Q 006923 322 VPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGA 400 (625)
Q Consensus 322 v~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNinn~~~~l~~l~~~l~~~~~~ 400 (625)
|+|+ |.|++|++|+. +|++++ |||+|+++...+.. .+.++|.+| ||||+||+|++++++++.....
T Consensus 227 v~Kt~~dek~Gvl~~~---~G~~~v--vEysqip~~~~~~~------~~~~~~~~F--ntnNi~~~l~~l~~~~~~~~~~ 293 (420)
T PF01704_consen 227 VPKTSPDEKGGVLCRY---DGKLQV--VEYSQIPKEHMAEF------KDIKGFLLF--NTNNIWFSLDFLKRLLERDELQ 293 (420)
T ss_dssp EE-CSTTTSSEEEEEE---TTEEEE--EEGGGS-HHGHHHH------TSTTTSBEE--EEEEEEEEHHHHHHHHHTTTCC
T ss_pred eecCCCCCceeEEEEe---CCccEE--EEeccCCHHHHHhh------hccccceEE--EeceeeEEHHHHHHHHHhcccc
Confidence 9985 78889999976 999988 99999999843321 223346666 9999999999999999887788
Q ss_pred cccccCCcccCCCCCcccCchhHhHhhccccccCCCCCceeEEEeeccceeecccCCCcccccCCCCCCCCChhhHHHHH
Q 006923 401 IKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAI 480 (625)
Q Consensus 401 lp~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl 480 (625)
||.|+|+|.++... .-.+.+|||++|++.+..|.+ .+++ +|+| +||+||||++++
T Consensus 294 Lp~h~a~Kki~~~d-~~~~~~q~Et~i~~~i~~f~~--~~~v-~V~R-~rF~PvKn~~dL-------------------- 348 (420)
T PF01704_consen 294 LPIHVAKKKIPYVD-NGIKVIQFETAIGFAIFQFDN--SFAV-EVPR-DRFAPVKNTSDL-------------------- 348 (420)
T ss_dssp S-EEEEEEESSEEC-TEEEEEEEECGGGGGGGGCTS--EEEE-EE-G-GG--B-SSHHHH--------------------
T ss_pred CccEEcchhccccc-CCccEEeehhhhhchHhhccC--cEEE-EEcH-HHcCCccccCcc--------------------
Confidence 99999999763221 123688999999998888853 3454 9999 999999999886
Q ss_pred HHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEcCCCCCCHHHHhhhcCCCCccCCCceEEEEeceEEecCeEEE
Q 006923 481 YCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLN 558 (625)
Q Consensus 481 ~~~~~~~L~~~G~~v~~~~~~~~~g~~~~~~P~i~l~p~~~~~~~~~~~k~~~~~~i~~~s~L~v~G~~~~~~~v~l~ 558 (625)
.++++.-+.+.++....-.-+.....|.|.|++.| .++++|..||+.+|+|.++++|+|+|||+||+||+|+
T Consensus 349 -----l~~~Sd~y~~~~~~~~~~~~~~~~~~p~i~lg~~f-~~v~~~~~r~~~ip~l~~~~~l~v~gdv~fg~~v~lk 420 (420)
T PF01704_consen 349 -----LLVRSDLYDLDDGTLVRNPLRAFHTRPLIKLGDHF-KKVDDFEKRFPSIPSLLELDSLTVSGDVTFGKNVVLK 420 (420)
T ss_dssp -----HHHHSTTEEEETTEEEEHCCHCSSCHHEEEECGGG-SSHHHHHHHBSSS-BETTEEEEEEESSEEE-TT-EEE
T ss_pred -----eeeccceeccccceeeecccccCCCCCeeccCccc-CchHHhhhhcCCCCCcccCCcceEecceEECCCcEeC
Confidence 33344333333221100001223456899999987 7899999999999999999999999999999999996
No 8
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.5e-82 Score=677.83 Aligned_cols=445 Identities=29% Similarity=0.433 Sum_probs=381.0
Q ss_pred HHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcc
Q 006923 39 QVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGE 118 (625)
Q Consensus 39 ~~~l~~~L~~~gQ~HL~~~~~~~~~~~~ek~~Ll~qL~~id~~~~~~l~~y~~~~~~~l~~s~~~~~~~~~~~p~vP~~~ 118 (625)
..++...|.++||+|||++|++++ ++++..|++|++.++.+++.++.. ..+.+.. + +-. -.+|+|+..
T Consensus 3 ~~~~~~~l~~~Gq~~l~~~w~eL~--~~~~~~l~~~ie~l~l~~~~~~~~--~~a~~~~--~-----~~~-~~~p~p~~~ 70 (477)
T KOG2388|consen 3 RTKLHLILLEAGQSHLFTQWPELS--EADKESLLDQIEVLNLSRIHGLQR--ISANEDS--K-----PVG-EIRPVPESK 70 (477)
T ss_pred hhHHHHHHHHcChHhHhhhchhcC--HHHHHHHHHHHHhhcccccchhhh--cChhhcc--C-----ccc-ccCCCCccc
Confidence 456889999999999999999965 889999999999999998876654 3333221 1 112 223455543
Q ss_pred cccC---CCchhhHHHHHHHHhhc--ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhcc
Q 006923 119 VLKF---GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAE 193 (625)
Q Consensus 119 ~l~~---~~~~~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~ 193 (625)
.... ...+..+|+..|+.+|+ ++|++++|||||||||+++||+++|+++++++||||+++++|+++|.++... .
T Consensus 71 ~~~~~~~~~~d~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~-~ 149 (477)
T KOG2388|consen 71 SWPLKERGLDDVDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMA-V 149 (477)
T ss_pred cceecccCchhhhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhh-h
Confidence 3222 33445559999999998 9999999999999999999999999999999999999999999999998765 3
Q ss_pred CCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHh
Q 006923 194 GKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLY 273 (625)
Q Consensus 194 g~~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~ 273 (625)
++...||||||||..|++.|++||+.|+|||+.++||+||+|+++||++ .+|++++ +.+.+++++|+|||++|.|+.
T Consensus 150 ~~~~~I~w~ImtS~~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~-~~gk~~l--e~k~~~a~ap~gngg~y~ai~ 226 (477)
T KOG2388|consen 150 SDGVDIPWYIMTSAFTHEATLEYFESHKYFGLKPEQVTFFQQGKLPCLD-LDGKFIL--EQKNSLAAAPDGNGGLYRAIK 226 (477)
T ss_pred ccCCceEEEEecCCCccHHhHhHHhhcCCCCCChhHeeeeecccccccc-cCCceec--cCccchhcCCCCCcHHHHHHH
Confidence 4446999999999999999999999999999999999999999999995 6888999 888999999999999999999
Q ss_pred hcChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeeeeccC-CccCccceEEEEecCC-CceeEEEEecc
Q 006923 274 SSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHAD-GRSMVINVEYN 351 (625)
Q Consensus 274 ~sGlL~~l~~~G~~yi~v~~vDN~L~~~~DP~~lG~~~~~~~~~~~kvv~r-~~~E~vG~i~~~~~~d-G~~~v~nVEYs 351 (625)
++ |++|.++|++|+|+|||||+|++.+||.||||++++++|+++|+|+| .|.|.+|++|.. + |.+.+ ||||
T Consensus 227 ~~--l~dm~~rgi~~~hiy~VdnvL~k~aDP~fiG~~it~~~d~~~k~V~k~~p~E~vG~~~~~---~~G~~~v--vEYs 299 (477)
T KOG2388|consen 227 DQ--LEDMAARGIFYDHIYCVDNVLLKVADPVFIGFSITKEADVAAKVVPKINPGEVVGIVALK---GQGTPLV--VEYS 299 (477)
T ss_pred hh--hhHHHhhcccEEEEEEecceeeEecccceeeEEeechhhHhhhhccccCCCCceEEEEec---CCCceeE--EEec
Confidence 98 99999999999999999999999999999999999999999999997 689999999976 4 86655 9999
Q ss_pred CccHHHHhcCCCC-CCCCCCCCCCCCccceeeEEEehhhhHHHHhhccCccccccCCc---ccCCCCCc----ccCchhH
Q 006923 352 QLDPLLRATGFPD-GDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASKTS----FKSSTRL 423 (625)
Q Consensus 352 el~~~l~~~~~~~-g~l~~~~gf~~f~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpK---~~d~~~~~----~~~~~rL 423 (625)
|++.+++..+.++ |+ +.++|||||||+|.+++++++.......+|+|+.-| |.|.++.. -+..+++
T Consensus 300 Ei~~~~a~~~~~d~g~------l~~~agnI~nh~ft~dFLkk~~~~~~~~lp~H~a~kKip~~~~~g~~~kP~kpnGik~ 373 (477)
T KOG2388|consen 300 ELDAELAKAKAPDGGR------LLFNAGNICNHFFTLDFLKKVTRASVPLLPYHKAEKKIPYVDSTGKLVKPTKPNGIKL 373 (477)
T ss_pred ccCHHHHhhcccccCc------cccCCccHHHHHHhhHHHHHhhhcccccchhhhhhccccccccCCcccCCCCCCceeE
Confidence 9999999999988 44 458899999999999999998876666678887644 55543321 1235799
Q ss_pred hHhhccccccCCCCCceeEEEeeccceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCccccc
Q 006923 424 ECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVF 503 (625)
Q Consensus 424 E~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~G~~v~~~~~~~~ 503 (625)
|+|+||+ |+.+.++++++|+|+++|||+||+..+. .|||+||+.+++++|.+|+..+|+.+.+.+
T Consensus 374 E~fifdv---f~~~k~f~~meV~Re~efSPlKng~~~~--------~D~p~T~~~~~l~~h~~wi~~~g~~f~~~~---- 438 (477)
T KOG2388|consen 374 EQFIFDV---FPSAKKFGLMEVPREEEFSPLKNGGKSS--------TDNPSTARIALLRLHIRWIEKAGGIFSDAE---- 438 (477)
T ss_pred Eeeeeee---cccccceeEEecchhhhcCccccCCCCC--------CCChhHHHHHHHHhhhhehhccCcEEecCc----
Confidence 9999997 5556788999999999999999999873 899999999999999999999999986542
Q ss_pred CCeeecCCCeEEEcCCCCCCHHHHhhhcC
Q 006923 504 NGQEVEVWPRLTWKPKWGLTFSEIKNKVS 532 (625)
Q Consensus 504 ~g~~~~~~P~i~l~p~~~~~~~~~~~k~~ 532 (625)
..++++|.|+|. |+.++.+.+.+.
T Consensus 439 --~~~evs~~vsy~---GE~lEs~~~g~~ 462 (477)
T KOG2388|consen 439 --AVVEVSPLVSYA---GENLESVPSGFE 462 (477)
T ss_pred --ceEEecceeeec---ccchhhccccce
Confidence 468899999999 899999986443
No 9
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=4.2e-75 Score=613.96 Aligned_cols=312 Identities=28% Similarity=0.450 Sum_probs=284.0
Q ss_pred HHHHHHHHhhc--ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecC
Q 006923 129 NYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTS 206 (625)
Q Consensus 129 ~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS 206 (625)
+|+++|+++|+ ++|+|+||||+|||||+++||+++|++.++++||||+++++|++++.++++. +|+...|||+||||
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~-~~~~~~ip~~imtS 80 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEA-SGKKVPIPWYIMTS 80 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhc-cCCCCCceEEEEcC
Confidence 68999999999 9999999999999999999999999988899999999999999999999854 45456899999999
Q ss_pred ccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCc
Q 006923 207 DDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGL 286 (625)
Q Consensus 207 ~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~ 286 (625)
+.||+.|++||++|+|||+++++|++|.|+++||+ +.+|++++ +++++++|+|+||||+|.+|++||+|++|+++|+
T Consensus 81 ~~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~-~~~g~~~l--~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~ 157 (323)
T cd04193 81 EATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCV-DFDGKILL--EEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGI 157 (323)
T ss_pred hhHhHHHHHHHHhCCcCCCCCceEEEEecCceeeE-cCCCcccc--CCCCccccCCCCchHHHHHHHHCChHHHHHhCCC
Confidence 99999999999999999999999999999999999 47899999 6788999999999999999999999999999999
Q ss_pred eEEEEEeCCCccccccchHHHHHHhhcCCceeeeeccCC-ccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCC
Q 006923 287 KWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDG 365 (625)
Q Consensus 287 ~yi~v~~vDN~L~~~~DP~~lG~~~~~~~~~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g 365 (625)
||+||+||||+|++++||.||||++++++||++|||+|+ |.|++|++|++ ||++++ |||+|++++++.+..++|
T Consensus 158 ~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~---~g~~~v--vEysel~~~~~~~~~~~g 232 (323)
T cd04193 158 KYIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLV---DGKPQV--VEYSEISDELAEKRDADG 232 (323)
T ss_pred EEEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEE---CCeEEE--EEeecCCHHHHhccCcCC
Confidence 999999999999999999999999999999999999997 99999999986 999887 999999999988887777
Q ss_pred CCCCCCCCCCCccceeeEEEehhhhHHHHhhccCccccccCCcc---cCCCCC----cccCchhHhHhhccccccCCCCC
Q 006923 366 DVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKY---KDASKT----SFKSSTRLECMMQDYPKTLPPSA 438 (625)
Q Consensus 366 ~l~~~~gf~~f~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpK~---~d~~~~----~~~~~~rLE~~m~D~~~~f~~~~ 438 (625)
++. +++||||+|||++++++++++.....||.|+++|. .|..+. ...+++|||+||||++.++ .
T Consensus 233 ~l~------f~~~ni~~~~fsl~fl~~~~~~~~~~l~~h~a~Kki~~~d~~~~~~~p~~~n~~klE~fifd~~~~~---~ 303 (323)
T cd04193 233 ELQ------YNAGNIANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVFPFA---K 303 (323)
T ss_pred cEe------cccchHhhheeCHHHHHHHHhhccccCCceEeccccCcccCcCcEeccCCCcEEEeHHHHHHHHHhC---C
Confidence 764 66999999999999999998775557999999983 353332 1234689999999986665 5
Q ss_pred ceeEEEeeccceeecccCCC
Q 006923 439 KVGFTVMDTWLAYAPVKNNP 458 (625)
Q Consensus 439 ~~g~~~v~R~~~FsPvKN~~ 458 (625)
++.+++|+|++||+||||++
T Consensus 304 ~~~~~eV~R~~~F~PvKn~~ 323 (323)
T cd04193 304 NFVCLEVDREEEFSPLKNAD 323 (323)
T ss_pred ceEEEEEChhhccccCcCCC
Confidence 67889999999999999984
No 10
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=9.3e-75 Score=602.60 Aligned_cols=289 Identities=19% Similarity=0.236 Sum_probs=257.2
Q ss_pred hcceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 006923 138 AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (625)
Q Consensus 138 l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (625)
|+|+|||+||||||||||+++||+++|+ ++++||||++++||+++++.|+ +.||||||||+.||++|++||
T Consensus 1 l~kvavl~LaGG~GTRLG~~~pKg~~~v--~~~~s~l~l~~~~i~~l~~~~~-------~~iPl~iMtS~~T~~~T~~~l 71 (300)
T cd00897 1 LNKLVVLKLNGGLGTSMGCTGPKSLIEV--RDGKTFLDLTVQQIEHLNKTYG-------VDVPLVLMNSFNTDEDTKKIL 71 (300)
T ss_pred CCcEEEEEecCCcccccCCCCCceeeec--CCCCcHHHHHHHHHHHHHHHcC-------CCceEEEECCCcchHHHHHHH
Confidence 5799999999999999999999999999 6999999999999999999886 489999999999999999999
Q ss_pred HhCCCCCCCCCcEEEEEecceeEEecCCCceecC-CCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCC
Q 006923 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (625)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN 296 (625)
++|++ ++++|++|+|+++||++ .+|++.+. ..++++++|+|+||||+|.+|++||+|++|+++|+||++|+||||
T Consensus 72 ~~~~~---~~~~v~~F~Q~~~P~~~-~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDN 147 (300)
T cd00897 72 KKYAG---VNVDIHTFNQSRYPRIS-KETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDN 147 (300)
T ss_pred HHcCC---CccCeEEEecCCcccCc-cccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEeccc
Confidence 99886 78999999999999996 57777773 236789999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHhhcCCceeeeeccCC-ccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCCCCC
Q 006923 297 GLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSP 375 (625)
Q Consensus 297 ~L~~~~DP~~lG~~~~~~~~~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~ 375 (625)
|++++||.||||++.++++|++|||+|+ |.|++|++|++ ||++++ |||+|+++..+.... +.. .|.+
T Consensus 148 -L~a~~Dp~~lg~~~~~~~~~~~evv~Kt~~dek~G~l~~~---~g~~~v--vEyse~p~e~~~~~~--~~~----~~~~ 215 (300)
T cd00897 148 -LGATVDLRILNHMVDNKAEYIMEVTDKTRADVKGGTLIQY---EGKLRL--LEIAQVPKEHVDEFK--SIK----KFKI 215 (300)
T ss_pred -ccccCCHHHHHHHHhcCCceEEEEeecCCCCCcccEEEEE---CCEEEE--EEeccCCHHHHHhhc--Ccc----cceE
Confidence 9999999999999999999999999986 77899999976 999988 999999998765443 121 2555
Q ss_pred CccceeeEEEehhhhHHHHhhccCccccccCCcccCCCCCcccCchhHhHhhccccccCCCCCceeEEEeeccceeeccc
Q 006923 376 FPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVK 455 (625)
Q Consensus 376 f~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvK 455 (625)
| |||||||++++++++++.....+|.|+|.|.++.+ .+++|||+||||++.+|++ ..+++|||+ ||+|||
T Consensus 216 ~--nt~n~~~~l~~L~~~~~~~~~~lp~h~~~K~v~p~----~~~~qlE~~i~da~~~~~~---~~~~eV~R~-rF~PvK 285 (300)
T cd00897 216 F--NTNNLWVNLKAVKRVVEENALDLEIIVNPKTVDGG----LNVIQLETAVGAAIKNFDN---ALGVNVPRS-RFLPVK 285 (300)
T ss_pred E--EEeEEEEEHHHHHHHHHhccCCCCeeecccccCCC----CCEEEeHhHhhhHHHhCCC---cEEEEEChh-hcCCCC
Confidence 4 99999999999999887655679999999977643 4789999999999888743 356799995 799999
Q ss_pred CCCccc
Q 006923 456 NNPEDA 461 (625)
Q Consensus 456 N~~~~~ 461 (625)
|++++.
T Consensus 286 n~~dll 291 (300)
T cd00897 286 TTSDLL 291 (300)
T ss_pred ChHHHH
Confidence 999985
No 11
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-69 Score=576.42 Aligned_cols=444 Identities=20% Similarity=0.243 Sum_probs=351.0
Q ss_pred hhHHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhh-ccCCCCCCCCCCCCCC
Q 006923 37 SEQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLAD-SKAGKNPFDGFTPSVP 115 (625)
Q Consensus 37 ~~~~~l~~~L~~~gQ~HL~~~~~~~~~~~~ek~~Ll~qL~~id~~~~~~l~~y~~~~~~~l~~-s~~~~~~~~~~~p~vP 115 (625)
.+.......+.+..|.|+|..|...+ +.+..+..+++..+|. ++...+++|.. +......|+.+.|+.|
T Consensus 13 ~~f~~~~~~l~~~~~~h~l~~l~~~s--~~~~~~~~~~~~~~d~--------~f~l~~~~ll~~s~~s~~~~~ki~~~~~ 82 (472)
T COG4284 13 FKFNSDAVSLAASQQEHLLDKLKQSS--EKQALKSFEKLLLLDI--------FFFLFSRYLLNTSKASTQEWDKIRPPNP 82 (472)
T ss_pred hhhhcchhhhhHHHHHHHHHHhhhhc--hHHHHhhhhhhhhhHH--------HHHHHHHHHhhcCcccceeecccCCCCh
Confidence 34556778889999999999998854 5566677777777774 45555555543 4445677888887544
Q ss_pred CcccccCCCchhhHHHHHHHHhhcceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCC
Q 006923 116 TGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGK 195 (625)
Q Consensus 116 ~~~~l~~~~~~~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~ 195 (625)
+ ....+++... +++..+...++|+|||+|||||||||||++||++++| .+|+||||+++|||+.++.+|+
T Consensus 83 d-~~~~~~~~~~-~~~~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl~~V--~~gks~~dl~~~qIk~ln~~~~------ 152 (472)
T COG4284 83 D-DVVDYEKKIL-EGWGLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEV--KDGKSLFDLQAEQIKYLNRQYN------ 152 (472)
T ss_pred h-hhccchhhcc-chhhhhhhhcCceEEEEecCCcccccccCCCceeEEe--cCCCcHHHHHHHHHHHHHHHhC------
Confidence 4 3344433322 2222233346799999999999999999999999999 4899999999999999999997
Q ss_pred cccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhc
Q 006923 196 CQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSS 275 (625)
Q Consensus 196 ~~~iPl~IMTS~~T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~s 275 (625)
++|||||||| .|++.|..+|+.++|||+++.+|+||+|+.+||+.+.+|++++...+.. ++|+|+||||+|.+|+.|
T Consensus 153 -~~vP~~iMtS-~nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~-~~~~P~GnG~lf~aL~~S 229 (472)
T COG4284 153 -VDVPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSN-LAWYPPGNGDLFKALKSS 229 (472)
T ss_pred -CCCCEEEEec-CCcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeecccCccccccCCcc-cccCCCCCccHHHHHHhc
Confidence 5999999999 9999999999999999999999999999999977788999998443332 999999999999999999
Q ss_pred ChHHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeeeeccC-CccCccceEEEEecCCCceeEEEEeccCcc
Q 006923 276 GLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQLD 354 (625)
Q Consensus 276 GlL~~l~~~G~~yi~v~~vDN~L~~~~DP~~lG~~~~~~~~~~~kvv~r-~~~E~vG~i~~~~~~dG~~~v~nVEYsel~ 354 (625)
|++++|.++|+||++|+|||| |++++||.|||+++.+++++.||+|.| ++.+++|.++.. ||+.++ +||++++
T Consensus 230 G~le~l~~~G~e~lfV~nIDN-L~~~vD~~~lg~~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~---~g~~rl--lEysev~ 303 (472)
T COG4284 230 GILEKLIAQGIEYLFVSNIDN-LGATVDLKFLGFMAETNYEYLMETTDKTKADEKVGILVTY---DGKLRL--LEYSEVP 303 (472)
T ss_pred chHHHHHhcCceEEEEecccc-cccccCHHHHHHHHhcCcceeEEEeecccccccceEEEEe---CCceEE--EEEecCC
Confidence 999999999999999999999 999999999999999999999999997 577888887755 999777 9999999
Q ss_pred HHHHhcCCCCCCCCCCCCCCCCccceeeEEEehhhhHHHHhhccCccccccCCcccCCCC--Cc-----ccCchhHhH-h
Q 006923 355 PLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASK--TS-----FKSSTRLEC-M 426 (625)
Q Consensus 355 ~~l~~~~~~~g~l~~~~gf~~f~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpK~~d~~~--~~-----~~~~~rLE~-~ 426 (625)
...+.+...+|.+ .+| |+||+|+.+..+..+.+.....||+|.+-|.....+ .. -+...++|. |
T Consensus 304 ~~~~~~~~s~~~~------~~~--n~Nni~l~~~~~~~l~~~~~l~Lpi~~a~Kki~~~~~~~~~~t~i~~~i~kfe~~F 375 (472)
T COG4284 304 NEHREEFTSDGKL------KYF--NTNNIWLHLFSVKFLKEAAYLNLPIHKAIKKIPQLDNIIQLTTAIGKNISKFENEF 375 (472)
T ss_pred hhHhhhhccccce------eee--ccccceeehhHHHHHHhhhccCCcchhhhcccCccccceeeccccccchhhccccc
Confidence 9877666555554 477 777777777766666665556789888766433221 11 123347885 9
Q ss_pred h-ccccccCCCCCceeEEEeeccceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCC
Q 006923 427 M-QDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNG 505 (625)
Q Consensus 427 m-~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~G~~v~~~~~~~~~g 505 (625)
| +|...+-+ .++.++..|||..||+|+||-.+.. .++
T Consensus 376 I~fDlF~~~s-~~~~~~~~vpR~~~f~Plkn~~~~~--------~~~--------------------------------- 413 (472)
T COG4284 376 IPFDLFLYKS-DENGGLLLVPRFGEFSPLKNLEGSH--------FDN--------------------------------- 413 (472)
T ss_pred cceeeeEEEe-cCCCceEeccccCCCCchhhccCCC--------CCc---------------------------------
Confidence 9 99754421 2667889999999999999988741 122
Q ss_pred eeecCCCeEEEcCCCCCCHHHHhhhcCCCCccCCCceEEEEeceEEecCeEEEeEEEEEcCCCCeeEeCC--eeEccce
Q 006923 506 QEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRVGG--KVQNKGW 582 (625)
Q Consensus 506 ~~~~~~P~i~l~p~~~~~~~~~~~k~~~~~~i~~~s~L~v~G~~~~~~~v~l~G~liI~a~~g~~~~i~~--~v~N~g~ 582 (625)
.+.+..+++..+.|.+..+++|+|++.|++|++|+ .+.+..++.|++ +++|.-+
T Consensus 414 ------------------~~~~~~~~~~~~~~~e~~~~~is~nv~~~~~~~lk-----~~~e~~~l~~~~~s~~e~~ii 469 (472)
T COG4284 414 ------------------VETFTCGIPRIPLILELEGLTISGNVLFGRNVTLK-----YASENTSLCIPNKSFLENVII 469 (472)
T ss_pred ------------------HHhhhcccccccchhhhccceecCceEeeecceee-----ecCCCceEeccCCeeeeeeeE
Confidence 22333344555678899999999999999999999 788888999988 6666543
No 12
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=2.6e-62 Score=504.78 Aligned_cols=265 Identities=31% Similarity=0.384 Sum_probs=233.6
Q ss_pred eEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 006923 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (625)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (625)
+|+|+||||+|||||++.||+++|+.+++++||||+++++|++++.++.. ...|||+||||+.||+.|++||++|
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~-----~~~Ip~~imts~~t~~~t~~~l~~~ 75 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLY-----SCKIPEQLMNSKYTHEKTQCYFEKI 75 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhc-----CCCCCEEEEcCchhHHHHHHHHHHc
Confidence 69999999999999999999999998889999999999999999999841 1489999999999999999999999
Q ss_pred CCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCcccc
Q 006923 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (625)
Q Consensus 221 ~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~~ 300 (625)
+ +++++|++|+|+++||++ .+|...+ ++++++.|+|+||||+|.+|+.+|+|++|+++|++|++|+|+||+|+.
T Consensus 76 ~---~~~~~v~~f~Q~~~P~~~-~~~~~~~--~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~ 149 (266)
T cd04180 76 N---QKNSYVITFMQGKLPLKN-DDDARDP--HNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVK 149 (266)
T ss_pred C---CCCCceEEEEeCCceEEe-CCCCccc--CCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCcc
Confidence 8 578999999999999997 4666666 677889999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhhcCCceeeeeccCCccCccce-EEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCCCCCCccc
Q 006923 301 KAIPASLGVSATKQYHVNSLAVPRKAKEAIGG-ITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 379 (625)
Q Consensus 301 ~~DP~~lG~~~~~~~~~~~kvv~r~~~E~vG~-i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gN 379 (625)
++||.++||++.++++++++||+|+..|.+|| +|.. .+|+..+ |||+|+++++++.+.+++++.+..++++++||
T Consensus 150 v~DP~~lG~~~~~~~~~~~kvv~K~~~d~k~G~~~~~--~~g~~~~--vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n 225 (266)
T cd04180 150 VADPLFIGIAIQNRKAINQKVVPKTRNEESGGYRIAN--INGRVQL--LEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFN 225 (266)
T ss_pred ccCHHHHHHHHHcCCCEEEEEEECCCCCCeEEEEEEe--cCCCEEE--EEeccCCHHHHhccccccCcCCCCceeeccce
Confidence 99999999999999999999999976655555 4543 1387665 99999999999888777776655558999999
Q ss_pred eeeEEEehhhhHHHHhhccCccccccCCcccCCCCCcccCchhHhHhhccccccCCCCCceeEEEeeccceeecccC
Q 006923 380 INQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKN 456 (625)
Q Consensus 380 inn~~~~l~~l~~~l~~~~~~lp~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN 456 (625)
||||||+|++|+++++ |++.+|+ ++..++|+|++||+||||
T Consensus 226 ~~~~~~~l~~l~~~~~---------------------------------d~~~~~~---~~~~~~v~r~~~F~PvKn 266 (266)
T cd04180 226 TNNLINFLVEFKDRVD---------------------------------DIIEFTD---DIVGVMVHRAEEFAPVKN 266 (266)
T ss_pred EEEEEEEHHHHHHHHH---------------------------------HHHhccC---ceEEEEeCchhccccCCC
Confidence 9999999999988774 5555553 335579999889999998
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.39 E-value=3.5e-05 Score=83.54 Aligned_cols=274 Identities=19% Similarity=0.186 Sum_probs=162.4
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
.+.+|+||-|+||||-++.||.+-|+ .|++.++..++....+.- ..+-++ =..-.+..++.+.+
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVLH~v---aGkpMl~hVi~~a~~l~~----------~~i~vV---vGh~ae~V~~~~~~ 65 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVLHPV---AGKPMLEHVIDAARALGP----------DDIVVV---VGHGAEQVREALAE 65 (460)
T ss_pred CceEEEEecCCCccccCCCcccchhc---cCccHHHHHHHHHhhcCc----------ceEEEE---EcCCHHHHHHHhcc
Confidence 46789999999999999999999998 599999999988876521 123222 24455666666664
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCce-EEEEEeCCCcc
Q 006923 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLK-WVLFFQDTNGL 298 (625)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~-yi~v~~vDN~L 298 (625)
.. ++.|+.|.. .+ -+|+-++ + ....+.++.+ .+.|.+=|-+|
T Consensus 66 ~~-------~v~~v~Q~e--ql--GTgHAV~--------------------~------a~~~l~~~~~g~vLVl~GD~PL 108 (460)
T COG1207 66 RD-------DVEFVLQEE--QL--GTGHAVL--------------------Q------ALPALADDYDGDVLVLYGDVPL 108 (460)
T ss_pred cc-------CceEEEecc--cC--ChHHHHH--------------------h------hhhhhhcCCCCcEEEEeCCccc
Confidence 32 466777754 11 2333322 1 1223445555 55666667777
Q ss_pred ccccch-HHHHHHhhcCCceeeeeccC-CccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCCCCCC
Q 006923 299 LFKAIP-ASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (625)
Q Consensus 299 ~~~~DP-~~lG~~~~~~~~~~~kvv~r-~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f 376 (625)
...--. .++.++...+..+...++.- .|. --|-+++ +.+|+.. ..||.-+-+++.+. + +-+
T Consensus 109 it~~TL~~L~~~~~~~~~~~tvLt~~~~dP~-GYGRIvr--~~~g~V~-~IVE~KDA~~eek~-------I------~ei 171 (460)
T COG1207 109 ITAETLEELLAAHPAHGAAATVLTAELDDPT-GYGRIVR--DGNGEVT-AIVEEKDASEEEKQ-------I------KEI 171 (460)
T ss_pred CCHHHHHHHHHhhhhcCCceEEEEEEcCCCC-CcceEEE--cCCCcEE-EEEEcCCCCHHHhc-------C------cEE
Confidence 664222 47777777777777666653 333 2354553 4455532 23898777665321 1 123
Q ss_pred ccceeeEEEehhhhHHHHhhccCccccccCCcccCCCCCcccCchhHhHhhccccccCCC-CCceeEEEeeccceeeccc
Q 006923 377 PGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPP-SAKVGFTVMDTWLAYAPVK 455 (625)
Q Consensus 377 ~gNinn~~~~l~~l~~~l~~~~~~lp~~vnpK~~d~~~~~~~~~~rLE~~m~D~~~~f~~-~~~~g~~~v~R~~~FsPvK 455 (625)
|+..+.|+-+.+.+.|.+ + -| | ..|=|--.-|++..+.. ..++..+.++..+|+.=|.
T Consensus 172 --NtGiy~f~~~~L~~~L~~----l---~n----n--------NaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN 230 (460)
T COG1207 172 --NTGIYAFDGAALLRALPK----L---SN----N--------NAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVN 230 (460)
T ss_pred --eeeEEEEcHHHHHHHHHH----h---cc----c--------cccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcC
Confidence 999999999988888865 1 11 0 11233334444444321 2345555667678888777
Q ss_pred CCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHHcCCcccCCcccccCCeeecCCCeEEEcC
Q 006923 456 NNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKAGAQVDDPVQEVFNGQEVEVWPRLTWKP 518 (625)
Q Consensus 456 N~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~G~~v~~~~~~~~~g~~~~~~P~i~l~p 518 (625)
|.-.++ .++.-+-+.-+.-+..+|+.+-+|.+..+ +..++.++-+.+.|
T Consensus 231 ~R~qLa-------------~~e~~~q~r~~~~~m~~GVtl~dP~t~~i-~~dv~ig~DvvI~p 279 (460)
T COG1207 231 DRVQLA-------------EAERIMQRRIAEKLMLAGVTLIDPATTYI-RGDVEIGRDVVIEP 279 (460)
T ss_pred cHHHHH-------------HHHHHHHHHHHHHHHHcCcEEeCCCeEEE-cCcEEECCceEEec
Confidence 666654 45555555555566678999877764221 22334444444443
No 14
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.20 E-value=0.00015 Score=80.45 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=36.8
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
.+.+|+||||.||||+.+.||.++|+. |++++++.++.+.+
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i~---gkpli~~~l~~l~~ 45 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTLL---GEPMLRFVYRALRP 45 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceecccC---CCcHHHHHHHHHHh
Confidence 578899999999999988999999984 99999999998753
No 15
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.15 E-value=0.00081 Score=74.03 Aligned_cols=178 Identities=15% Similarity=0.138 Sum_probs=104.8
Q ss_pred eEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 006923 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (625)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (625)
+.+|+||||.||||+...||.++|+. |++++++.+++++.. . -..+|+++. ..+.+.+++.++
T Consensus 3 ~~aiIlAaG~GtRl~~~~pK~Llpi~---gkPli~~~i~~l~~~----~---------~~i~Ivv~~-~~~~i~~~~~~~ 65 (430)
T PRK14359 3 LSIIILAAGKGTRMKSSLPKVLHTIC---GKPMLFYILKEAFAI----S---------DDVHVVLHH-QKERIKEAVLEY 65 (430)
T ss_pred ccEEEEcCCCCccCCCCCCceeCEEC---CccHHHHHHHHHHHc----C---------CcEEEEECC-CHHHHHHHHHhc
Confidence 56899999999999988999999984 999999999998753 1 135666765 467788888653
Q ss_pred CCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCcccc
Q 006923 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (625)
Q Consensus 221 ~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~~ 300 (625)
++ .+.+..|+ ...+.|.|+....+ ...-+++.+.+-|+++.
T Consensus 66 --~~----~v~~~~~~----------------------~~~~~gt~~al~~~----------~~~~d~vlv~~gD~p~~- 106 (430)
T PRK14359 66 --FP----GVIFHTQD----------------------LENYPGTGGALMGI----------EPKHERVLILNGDMPLV- 106 (430)
T ss_pred --CC----ceEEEEec----------------------CccCCCcHHHHhhc----------ccCCCeEEEEECCccCC-
Confidence 11 23333221 01233444433321 11257889999999653
Q ss_pred ccchHHHHHHhhcCCceeeeeccCCccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCCCCCCccce
Q 006923 301 KAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (625)
Q Consensus 301 ~~DP~~lG~~~~~~~~~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNi 380 (625)
++..+-.+.+.+.++.+-+++.......|.+.. .+|+.. .-+|.....+ .+.. .+..|+
T Consensus 107 --~~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~---d~g~v~-~i~e~~~~~~---------~~~~------~~~~~~ 165 (430)
T PRK14359 107 --EKDELEKLLENDADIVMSVFHLADPKGYGRVVI---ENGQVK-KIVEQKDANE---------EELK------IKSVNA 165 (430)
T ss_pred --CHHHHHHHHhCCCCEEEEEEEcCCCccCcEEEE---cCCeEE-EEEECCCCCc---------cccc------ceEEEe
Confidence 556666666667776555544221223564332 356421 1133321110 0110 112488
Q ss_pred eeEEEehhhhHHHHh
Q 006923 381 NQLILELGPYMEELK 395 (625)
Q Consensus 381 nn~~~~l~~l~~~l~ 395 (625)
..++|+-+.+.+.+.
T Consensus 166 Giyif~~~~l~~~~~ 180 (430)
T PRK14359 166 GVYLFDRKLLEEYLP 180 (430)
T ss_pred EEEEEEHHHHHHHHH
Confidence 888899887766554
No 16
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=97.84 E-value=0.00051 Score=72.53 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=90.0
Q ss_pred ceEEEEEcCCccccCCc---cCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 006923 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (625)
.+-.|+||||.||||.- ..||.++|+. +|+++++.++.+... + .--++|++...-.+...++
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv~---gkPmI~~~l~~l~~a----G--------i~~I~ii~~~~~~~~~~~~ 67 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIY---DKPMIYYPLSTLMLA----G--------IRDILIISTPQDTPRFQQL 67 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEecCCchHHHHHH
Confidence 45689999999999974 8899999994 899999999888642 2 1235556666656678888
Q ss_pred HHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCC
Q 006923 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (625)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN 296 (625)
|.....||++ +.+..| -.|.|-|+-+.... +++. +-+++. ..-||
T Consensus 68 l~~g~~~g~~---i~y~~q------------------------~~~~Gta~Al~~a~------~~i~-~~~~~l-v~gD~ 112 (292)
T PRK15480 68 LGDGSQWGLN---LQYKVQ------------------------PSPDGLAQAFIIGE------EFIG-GDDCAL-VLGDN 112 (292)
T ss_pred HcCccccCce---eEEEEC------------------------CCCCCHHHHHHHHH------HHhC-CCCEEE-EECCe
Confidence 8776666653 222111 12567766554322 2332 224554 45688
Q ss_pred ccccccchHHHHHHhhcCCceeeeeccCCccCccceEE
Q 006923 297 GLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (625)
Q Consensus 297 ~L~~~~DP~~lG~~~~~~~~~~~kvv~r~~~E~vG~i~ 334 (625)
++...--..++-.+..++.++.+-+++....++-|++.
T Consensus 113 i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~ 150 (292)
T PRK15480 113 IFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVE 150 (292)
T ss_pred eeeccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEE
Confidence 65332223567767666666655444433335667754
No 17
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.72 E-value=0.0031 Score=70.37 Aligned_cols=185 Identities=18% Similarity=0.170 Sum_probs=104.0
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
++..|+||||.||||+...||.++|+. +++++++.++++.+. + .-.++|.++.. .+.+.++|.+
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l~pi~---g~pli~~~l~~l~~~----g--------i~~iiiv~~~~-~~~i~~~~~~ 66 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVMHPLA---GRPMVSWPVAAAREA----G--------AGRIVLVVGHQ-AEKVREHFAG 66 (459)
T ss_pred cceEEEEcCCCCcccCCCCCceeceeC---CccHHHHHHHHHHhc----C--------CCeEEEEECCC-HHHHHHHhcc
Confidence 567899999999999988999999984 899999998887642 1 23566666654 5667777653
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 006923 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (625)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~ 299 (625)
.. .+.+..|. .|-|.|+..... ++.+ +..-+++.+.+-|+++.
T Consensus 67 ~~-------~i~~~~~~------------------------~~~Gt~~al~~a-----~~~l-~~~~~~vlv~~gD~p~~ 109 (459)
T PRK14355 67 DG-------DVSFALQE------------------------EQLGTGHAVACA-----APAL-DGFSGTVLILCGDVPLL 109 (459)
T ss_pred CC-------ceEEEecC------------------------CCCCHHHHHHHH-----HHHh-hccCCcEEEEECCccCc
Confidence 11 12221110 123555432221 2222 22247899999999764
Q ss_pred cccc-hHHHHHHhhcCCceeeeeccCCccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCCCCCCcc
Q 006923 300 FKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPG 378 (625)
Q Consensus 300 ~~~D-P~~lG~~~~~~~~~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~g 378 (625)
...| -.++-.+..+++++.....+......-|.+. + ..+|+. ++..|-++.. +.+. . ....
T Consensus 110 ~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~-~-d~~g~v----~~~~ek~~~~-----~~~~------~-~~~~ 171 (459)
T PRK14355 110 RAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIV-R-DADGRV----LRIVEEKDAT-----PEER------S-IREV 171 (459)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEE-E-cCCCCE----EEEEEcCCCC-----hhHh------h-ccEE
Confidence 4433 3455556566666655444432223446543 2 234542 2332211100 0000 0 1124
Q ss_pred ceeeEEEehhhhHHHHh
Q 006923 379 NINQLILELGPYMEELK 395 (625)
Q Consensus 379 Ninn~~~~l~~l~~~l~ 395 (625)
|++.++|+-+.+.+.++
T Consensus 172 ~~Giy~~~~~~l~~~l~ 188 (459)
T PRK14355 172 NSGIYCVEAAFLFDAIG 188 (459)
T ss_pred EEEEEEEeHHHHHHHHH
Confidence 88999999876655554
No 18
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=97.72 E-value=0.0032 Score=69.63 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=47.9
Q ss_pred EEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
-+|+||||.||||+.+.||.++|+. |++++++.++.+.+. + .-.++|.++.. .+.+.+++.+
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i~---gkpli~~~l~~l~~~----g--------~~~iiiv~~~~-~~~i~~~~~~ 63 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPLA---GKPMLEHVIDAARAL----G--------PQKIHVVYGHG-AEQVRKALAN 63 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhceeC---CccHHHHHHHHHHhC----C--------CCeEEEEECCC-HHHHHHHhcC
Confidence 3688999999999988899999984 899999998887542 1 22456777765 5667777764
No 19
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.71 E-value=0.0011 Score=71.89 Aligned_cols=196 Identities=15% Similarity=0.137 Sum_probs=109.1
Q ss_pred ceEEEEEcCCccccCCc---cCCcccCCCcCCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 006923 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (625)
++-+|+||||.||||.- +.||.++|+. |+ +++++.++.+... + ---++|.|. ...+.+.+
T Consensus 3 ~m~avILAaG~GtRl~plT~~~PK~llpv~---gk~pli~~~l~~l~~~----G--------i~~i~iv~~-~~~~~i~~ 66 (380)
T PRK05293 3 EMLAMILAGGQGTRLGKLTKNIAKPAVPFG---GKYRIIDFTLSNCANS----G--------IDTVGVLTQ-YQPLELNN 66 (380)
T ss_pred cEEEEEECCCCCcccchhhcCCccceeeeC---CceeehhHHHHHHHhC----C--------CCEEEEEec-CCHHHHHH
Confidence 57889999999999985 7899999984 88 8999999988642 2 113566665 46788999
Q ss_pred HHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchh-hHHHhhcChHHHHHHcCceEEEEEeC
Q 006923 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDV-HALLYSSGLLKEWHDAGLKWVLFFQD 294 (625)
Q Consensus 216 ~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi-~~aL~~sGlL~~l~~~G~~yi~v~~v 294 (625)
+|.+...||++..+ +.+..+- +.. .. .-.-.|-|.|+- +.++ +.+....-+++.|.+-
T Consensus 67 ~~~~~~~~~~~~~~------~~~~i~~-----~~~--~~--~~~~~~~Gta~al~~a~------~~l~~~~~~~~lV~~g 125 (380)
T PRK05293 67 HIGIGSPWDLDRIN------GGVTILP-----PYS--ES--EGGKWYKGTAHAIYQNI------DYIDQYDPEYVLILSG 125 (380)
T ss_pred HHhCCCcccccCCC------CCEEEeC-----Ccc--cC--CCCcccCCcHHHHHHHH------HHHHhCCCCEEEEecC
Confidence 99876667664221 1111110 000 00 000123466443 3332 2232222367888888
Q ss_pred CCccccccchHHHHHHhhcCCceeeeecc--CCccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCC
Q 006923 295 TNGLLFKAIPASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETG 372 (625)
Q Consensus 295 DN~L~~~~DP~~lG~~~~~~~~~~~kvv~--r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~g 372 (625)
|+. ...---.++-.+..+++++..-+.. .....+.|.+.. ..+|+ + .++.|.+. .+..
T Consensus 126 D~l-~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~--d~~g~--V--~~~~eKp~------~~~~------- 185 (380)
T PRK05293 126 DHI-YKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNT--DENMR--I--VEFEEKPK------NPKS------- 185 (380)
T ss_pred CEE-EcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEE--CCCCc--E--EEEEeCCC------CCCc-------
Confidence 983 3221123566666677775443322 112234565432 22343 3 34433321 1100
Q ss_pred CCCCccceeeEEEehhhhHHHHh
Q 006923 373 YSPFPGNINQLILELGPYMEELK 395 (625)
Q Consensus 373 f~~f~gNinn~~~~l~~l~~~l~ 395 (625)
. ..|+..+.|+-+.+.+.+.
T Consensus 186 --~-~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 186 --N-LASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred --c-eeeeEEEEEcHHHHHHHHH
Confidence 1 2388899999876666554
No 20
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.69 E-value=0.001 Score=73.16 Aligned_cols=206 Identities=14% Similarity=0.168 Sum_probs=112.0
Q ss_pred hhcceEEEEEcCCccccCC---ccCCcccCCCcCCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHH
Q 006923 137 EAKNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSR 212 (625)
Q Consensus 137 ~l~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~ 212 (625)
+..++.+|+||||.||||. .+.||.++|+. |+ +++++.++.+... + .--++|.|. ...+.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~---gk~plI~~~L~~l~~~----G--------i~~i~iv~~-~~~~~ 65 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFG---GSYRLIDFVLSNLVNS----G--------YLRIYVLTQ-YKSHS 65 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeC---CcceEhHHHHHHHHHC----C--------CCEEEEEec-cCHHH
Confidence 3457889999999999998 88999999994 77 9999998888652 2 112355554 67888
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEE
Q 006923 213 TQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFF 292 (625)
Q Consensus 213 T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~ 292 (625)
+.++|.+. +++....+.++.. .|.- ... -...|-|.|+-.... ++.+....-+++.+.
T Consensus 66 i~~~~~~~--~~~~~~~~~~~~~--~~~~-----------~~~--~~~~~lGta~al~~a-----~~~i~~~~~~~~lv~ 123 (407)
T PRK00844 66 LDRHISQT--WRLSGLLGNYITP--VPAQ-----------QRL--GKRWYLGSADAIYQS-----LNLIEDEDPDYVVVF 123 (407)
T ss_pred HHHHHHhC--cCccccCCCeEEE--CCcc-----------cCC--CCCcccCCHHHHHHH-----HHHHHhcCCCEEEEe
Confidence 99999742 2222111111100 0100 000 012355766644322 223333344787888
Q ss_pred eCCCccccccchHHHHHHhhcCCceeeeec--cCCccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCC
Q 006923 293 QDTNGLLFKAIPASLGVSATKQYHVNSLAV--PRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (625)
Q Consensus 293 ~vDN~L~~~~DP~~lG~~~~~~~~~~~kvv--~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~ 370 (625)
+-|++ ...---.++-++..+++++.+-+. +......-|++. + ..+|+ + .++.|-+..... ....
T Consensus 124 ~gD~v-~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~-~-d~~g~--v--~~~~eKp~~~~~------~~~~- 189 (407)
T PRK00844 124 GADHV-YRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIE-V-DPDGR--I--RGFLEKPADPPG------LPDD- 189 (407)
T ss_pred cCCEE-EcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEE-E-CCCCC--E--EEEEECCCCccc------ccCC-
Confidence 88883 322113456777777777655443 222223456553 2 23454 2 333333221000 0000
Q ss_pred CCCCCCccceeeEEEehhhhHHHHhh
Q 006923 371 TGYSPFPGNINQLILELGPYMEELKK 396 (625)
Q Consensus 371 ~gf~~f~gNinn~~~~l~~l~~~l~~ 396 (625)
.+. ...|+..+.|+-+.+.+.+.+
T Consensus 190 ~~~--~~~~~Giyi~~~~~l~~~l~~ 213 (407)
T PRK00844 190 PDE--ALASMGNYVFTTDALVDALRR 213 (407)
T ss_pred CCC--cEEEeEEEEEeHHHHHHHHHH
Confidence 001 124888899998876666643
No 21
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=97.69 E-value=0.00083 Score=70.71 Aligned_cols=141 Identities=18% Similarity=0.169 Sum_probs=87.0
Q ss_pred EEEEcCCccccCCc---cCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
.|+||||.||||.- ..||.++|+. +++++++.++.+... + .-.++|.+.....+..+++|..
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv~---gkPmI~~~L~~l~~a----G--------i~~I~iv~~~~~~~~~~~~lg~ 66 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPIY---DKPMIYYPLSTLMLA----G--------IRDILIISTPQDTPRFQQLLGD 66 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEEC---CEEhHHHHHHHHHHC----C--------CCEEEEEecCCcHHHHHHHhcc
Confidence 48899999999964 8999999994 899999999888642 2 1245567777777788888877
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 006923 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (625)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~ 299 (625)
...||++ +.+..| ..|-|-|+-+.... .++.. =.++ +..-||++.
T Consensus 67 g~~~g~~---i~~~~q------------------------~~~~Gta~al~~a~------~~l~~-~~~~-li~gD~i~~ 111 (286)
T TIGR01207 67 GSQWGVN---LSYAVQ------------------------PSPDGLAQAFIIGE------DFIGG-DPSA-LVLGDNIFY 111 (286)
T ss_pred ccccCce---EEEEEc------------------------cCCCCHHHHHHHHH------HHhCC-CCEE-EEECCEecc
Confidence 6666653 322222 13456665444322 12222 2344 556788653
Q ss_pred cccc-hHHHHHHhhcCCceeeeeccCCccCccceEE
Q 006923 300 FKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (625)
Q Consensus 300 ~~~D-P~~lG~~~~~~~~~~~kvv~r~~~E~vG~i~ 334 (625)
. .| ..++-.+..++.++.+-+.+....++-|++.
T Consensus 112 ~-~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~ 146 (286)
T TIGR01207 112 G-HDLSDLLKRAAARESGATVFAYQVSDPERYGVVE 146 (286)
T ss_pred c-cCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEE
Confidence 3 23 3456666666666655544433334567664
No 22
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.68 E-value=0.00087 Score=67.09 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=53.4
Q ss_pred EEEEcCCccccCC---ccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
+|+||||.||||+ ...||.++|+. |++++++.++.+.+. + ---++|.|.. ..+.+.++|++
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~llpi~---g~piI~~~l~~l~~~----G--------i~~I~iv~~~-~~~~i~~~l~~ 66 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRCLLPLA---NVPLIDYTLEFLALN----G--------VEEVFVFCCS-HSDQIKEYIEK 66 (217)
T ss_pred EEEEcCCCcccccccccCCCceeeEEC---CEehHHHHHHHHHHC----C--------CCeEEEEeCC-CHHHHHHHHhh
Confidence 6899999999998 58999999985 899999999888652 2 1235677774 67889999998
Q ss_pred CCCCCCC
Q 006923 220 NSYFGMK 226 (625)
Q Consensus 220 ~~~FGl~ 226 (625)
..++++.
T Consensus 67 ~~~~~~~ 73 (217)
T cd04197 67 SKWSKPK 73 (217)
T ss_pred ccccccc
Confidence 7665543
No 23
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=97.58 E-value=0.0015 Score=68.28 Aligned_cols=197 Identities=17% Similarity=0.138 Sum_probs=109.6
Q ss_pred EEEEEcCCccccCC----ccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 006923 142 AFVLVAGGLGERLG----YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (625)
Q Consensus 142 avvlLaGGlGTRLG----~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (625)
-+|+||||.||||. ...||.++|+. .++|++|..++++..+. + .-.++|.|+...++.+.+++
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l~--g~~~li~~~l~~l~~~~---~--------~~~i~vvt~~~~~~~v~~~l 68 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKLF--GDKSLLQQTLDRLKGLV---P--------PDRILVVTNEEYRFLVREQL 68 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEcC--CCCcHHHHHHHHHhcCC---C--------CCcEEEEechHHHHHHHHHH
Confidence 46899999999995 57899999983 34999999999876431 0 23688899877677777777
Q ss_pred HhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCch-hhHHHhhcChHHHHHH-cCceEEEEEeCC
Q 006923 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHD-AGLKWVLFFQDT 295 (625)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sGlL~~l~~-~G~~yi~v~~vD 295 (625)
++ .+ . .+ +++..+ .|.|.|+ +..++. .+.+ .+-+++.|.+.|
T Consensus 69 ~~---~~-~--~~----------------~ii~ep--------~~~gTa~ai~~a~~------~~~~~~~~~~vlVl~~D 112 (274)
T cd02509 69 PE---GL-P--EE----------------NIILEP--------EGRNTAPAIALAAL------YLAKRDPDAVLLVLPSD 112 (274)
T ss_pred hh---cC-C--Cc----------------eEEECC--------CCCCcHHHHHHHHH------HHHhcCCCCeEEEecch
Confidence 65 11 1 11 122211 1223333 222221 1222 234788888888
Q ss_pred Cccccccch-HHHHHH---hhcCCceeeeeccCCccCccceEEEEecCCC-ceeEEEEeccCccHHHHhcCCCCCCCCCC
Q 006923 296 NGLLFKAIP-ASLGVS---ATKQYHVNSLAVPRKAKEAIGGITRLTHADG-RSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (625)
Q Consensus 296 N~L~~~~DP-~~lG~~---~~~~~~~~~kvv~r~~~E~vG~i~~~~~~dG-~~~v~nVEYsel~~~l~~~~~~~g~l~~~ 370 (625)
.++....+. ..+--+ ++.+..+.+-+.+..|...-|.+..-...+| -..| ..+.|.+..-.++. -+.
T Consensus 113 ~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~yGyI~~~~~~~~~~~~V--~~f~EKP~~~~a~~----~~~-- 184 (274)
T cd02509 113 HLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGYGYIEAGEKLGGGVYRV--KRFVEKPDLETAKE----YLE-- 184 (274)
T ss_pred hcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCeEEEEeCCcCCCCceEE--eEEEECcChHHHHH----Hhh--
Confidence 854311111 112111 2256667666666666666676643111112 1233 34444443321111 010
Q ss_pred CCCCCCccceeeEEEehhhhHHHHhhc
Q 006923 371 TGYSPFPGNINQLILELGPYMEELKKT 397 (625)
Q Consensus 371 ~gf~~f~gNinn~~~~l~~l~~~l~~~ 397 (625)
.|-.++ |+..+.|+.+.+.+.+++.
T Consensus 185 ~g~~~w--NsGiyi~~~~~l~~~l~~~ 209 (274)
T cd02509 185 SGNYLW--NSGIFLFRAKTFLEELKKH 209 (274)
T ss_pred cCCeEE--ECceeeeeHHHHHHHHHHH
Confidence 111133 9999999999988888764
No 24
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=97.50 E-value=0.003 Score=63.70 Aligned_cols=176 Identities=14% Similarity=0.116 Sum_probs=100.3
Q ss_pred EEEEcCCccccCCc---cCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
+|+||||.||||+- +.||.++|+. ++++++..++.+... + --.++|.|+. .++.+.+++.+
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~llpv~---g~pli~~~l~~l~~~----g--------~~~v~iv~~~-~~~~~~~~l~~ 66 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKPLVEFC---NKPMIEHQIEALAKA----G--------VKEIILAVNY-RPEDMVPFLKE 66 (233)
T ss_pred EEEecCCCccccCccccCCCCccCeEC---CcchHHHHHHHHHHC----C--------CcEEEEEeee-CHHHHHHHHhc
Confidence 58899999999964 7899999984 889999999998653 1 1135666654 56778888874
Q ss_pred CC-CCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCcc
Q 006923 220 NS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (625)
Q Consensus 220 ~~-~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L 298 (625)
.. .+|+ . +.. . ....|.|-|+-.... .+.+ ...-+-+.+.+-|++
T Consensus 67 ~~~~~~~-----~----------------i~~--~----~~~~~~G~~~al~~a-----~~~~-~~~~~~~lv~~~D~~- 112 (233)
T cd06425 67 YEKKLGI-----K----------------ITF--S----IETEPLGTAGPLALA-----RDLL-GDDDEPFFVLNSDVI- 112 (233)
T ss_pred ccccCCe-----E----------------EEe--c----cCCCCCccHHHHHHH-----HHHh-ccCCCCEEEEeCCEe-
Confidence 31 1221 1 111 0 011245554433221 1222 221122455566763
Q ss_pred ccccchHHHHHHhhcCCceeeeeccCCccCccceEEEEecC-CCceeEEEEeccCccHHHHhcCCCCCCCCCCCCCCCCc
Q 006923 299 LFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHA-DGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 377 (625)
Q Consensus 299 ~~~~DP~~lG~~~~~~~~~~~kvv~r~~~E~vG~i~~~~~~-dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~ 377 (625)
...--..++-++..++++..+-+.+......-|.+.. .. +| +| +++.|-+.. + .. . .
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d~~~~--~v--~~~~ekp~~------~---~~------~-~ 170 (233)
T cd06425 113 CDFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVH--DENTG--RI--ERFVEKPKV------F---VG------N-K 170 (233)
T ss_pred eCCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEE--cCCCC--EE--EEEEECCCC------C---CC------C-E
Confidence 3222246788888888988877776544445676543 22 34 33 455433210 1 01 1 2
Q ss_pred cceeeEEEehhhh
Q 006923 378 GNINQLILELGPY 390 (625)
Q Consensus 378 gNinn~~~~l~~l 390 (625)
.|+..++|+-+.+
T Consensus 171 ~~~Giyi~~~~~l 183 (233)
T cd06425 171 INAGIYILNPSVL 183 (233)
T ss_pred EEEEEEEECHHHH
Confidence 4889999997644
No 25
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=97.50 E-value=0.0061 Score=60.80 Aligned_cols=180 Identities=19% Similarity=0.181 Sum_probs=99.4
Q ss_pred EEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCC
Q 006923 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSY 222 (625)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~ 222 (625)
+|+||||.||||+...||.++|+. |++++++.++.+... + .-.++|.++.. ++.+.+++.+
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v~---gkpli~~~i~~l~~~----~--------i~~i~iv~~~~-~~~i~~~~~~--- 61 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPLA---GKPMLEHVLDAARAL----G--------PDRIVVVVGHG-AEQVKKALAN--- 61 (229)
T ss_pred CEEEeCCCCccCCCCCChhcceeC---CccHHHHHHHHHHhC----C--------CCeEEEEECCC-HHHHHHHhCC---
Confidence 478999999999977899999984 899999988887642 1 22456666655 6777777764
Q ss_pred CCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCch-hhHHHhhcChHHHHHHcCceEEEEEeCCCccccc
Q 006923 223 FGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFK 301 (625)
Q Consensus 223 FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~~~ 301 (625)
++ +.++.|. .+.|.++ ++.++ +.+ +++.+++.+.+-|+++...
T Consensus 62 ~~-----~~~~~~~------------------------~~~g~~~ai~~a~------~~~-~~~~~~vli~~~D~p~~~~ 105 (229)
T cd02540 62 PN-----VEFVLQE------------------------EQLGTGHAVKQAL------PAL-KDFEGDVLVLYGDVPLITP 105 (229)
T ss_pred CC-----cEEEECC------------------------CCCCCHHHHHHHH------Hhh-ccCCCeEEEEeCCccccCH
Confidence 11 2222220 0123333 33333 222 2246789999999965432
Q ss_pred cch-HHHHHHhhcCCceeeeeccCCccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCCCCCCccce
Q 006923 302 AIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (625)
Q Consensus 302 ~DP-~~lG~~~~~~~~~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNi 380 (625)
-+. .++-.+.+.++++++-+++......-|.+.. ..+|+.. ..+|...+.+. + . . ....|+
T Consensus 106 ~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~v~-~~~ek~~~~~~---~-----~------~-~~~~~~ 167 (229)
T cd02540 106 ETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIR--DGNGKVL-RIVEEKDATEE---E-----K------A-IREVNA 167 (229)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEE--cCCCCEE-EEEECCCCChH---H-----H------h-hceEEe
Confidence 211 1234444456666665554321123454322 2345421 11332222110 0 0 0 013488
Q ss_pred eeEEEehhhhHHHHh
Q 006923 381 NQLILELGPYMEELK 395 (625)
Q Consensus 381 nn~~~~l~~l~~~l~ 395 (625)
+.++|+-+.+.+.++
T Consensus 168 giy~~~~~~~~~~l~ 182 (229)
T cd02540 168 GIYAFDAEFLFEALP 182 (229)
T ss_pred EEEEEEHHHHHHHHH
Confidence 889999877666664
No 26
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=97.48 E-value=0.00068 Score=68.56 Aligned_cols=184 Identities=18% Similarity=0.163 Sum_probs=107.6
Q ss_pred EEEEcCCccccCC---ccCCcccCCCcCCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006923 143 FVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (625)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (625)
.|+||||.||||. .+.||.++|+. ++ +++++.++++... + .--+++.+.....+...++++
T Consensus 2 avIla~G~GtRl~plt~~~pK~ll~i~---g~~pli~~~l~~l~~~----g--------~~~ii~V~~~~~~~~i~~~~~ 66 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKPLLPIG---GKYPLIDYVLENLANA----G--------IKEIIVVVNGYKEEQIEEHLG 66 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGGGSEET---TEEEHHHHHHHHHHHT----T--------CSEEEEEEETTTHHHHHHHHT
T ss_pred EEEECCCCCccCchhhhccccccceec---CCCcchhhhhhhhccc----C--------CceEEEEEeeccccccccccc
Confidence 3677999999996 68899999984 77 9999999988652 2 112356666667788999999
Q ss_pred hCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcC-ceEEEEEeCCCc
Q 006923 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAG-LKWVLFFQDTNG 297 (625)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G-~~yi~v~~vDN~ 297 (625)
+...+++ +|.+..| ..|.|.|+..... .+.+.... -+++.+.+.|+.
T Consensus 67 ~~~~~~~---~i~~i~~------------------------~~~~Gta~al~~a-----~~~i~~~~~~~~~lv~~gD~i 114 (248)
T PF00483_consen 67 SGYKFGV---KIEYIVQ------------------------PEPLGTAGALLQA-----LDFIEEEDDDEDFLVLNGDII 114 (248)
T ss_dssp TSGGGTE---EEEEEEE------------------------SSSSCHHHHHHHT-----HHHHTTSEE-SEEEEETTEEE
T ss_pred ccccccc---cceeeec------------------------ccccchhHHHHHH-----HHHhhhccccceEEEEecccc
Confidence 8765551 1222111 1111555544432 22222222 246889998983
Q ss_pred cccccchHHHHHHhhcCCce--eeeeccCCccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCCCCC
Q 006923 298 LLFKAIPASLGVSATKQYHV--NSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSP 375 (625)
Q Consensus 298 L~~~~DP~~lG~~~~~~~~~--~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~ 375 (625)
....-..++-.+..++.++ .+..++......-|.+.. ..+| +| ++.-|-+.. ... ..
T Consensus 115 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d~~~--~V--~~~~EKP~~---------~~~----~~- 173 (248)
T PF00483_consen 115 -FDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEV--DEDG--RV--IRIVEKPDN---------PNA----SN- 173 (248)
T ss_dssp -ESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEE--ETTS--EE--EEEEESCSS---------HSH----SS-
T ss_pred -ccchhhhHHHhhhccccccccccccccccccccceeeee--ccce--eE--EEEeccCcc---------ccc----ce-
Confidence 3333356788888888754 444444444455565443 2345 33 333233221 000 01
Q ss_pred CccceeeEEEehhhhHHHHh
Q 006923 376 FPGNINQLILELGPYMEELK 395 (625)
Q Consensus 376 f~gNinn~~~~l~~l~~~l~ 395 (625)
-.|+..++|+-+.+...++
T Consensus 174 -~~~~G~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 174 -LINTGIYIFKPEIFDFLLE 192 (248)
T ss_dssp -EEEEEEEEEETHHHHHHHH
T ss_pred -eccCceEEEcchHHHHHhh
Confidence 2488889999886665543
No 27
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=97.46 E-value=0.0017 Score=63.92 Aligned_cols=139 Identities=18% Similarity=0.148 Sum_probs=84.5
Q ss_pred EEEEcCCccccCC---ccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
+|+||||.||||+ ...||.++|+ .|++++++.++.+... + --.++|.|.. ..+.+.+++.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v---~g~pli~~~l~~l~~~----g--------~~~i~vv~~~-~~~~i~~~~~~ 64 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPI---AGKPILEYIIERLARA----G--------IDEIILVVGY-LGEQIEEYFGD 64 (217)
T ss_pred CEEecCCccccccccccCCCccccEE---CCeeHHHHHHHHHHHC----C--------CCEEEEEecc-CHHHHHHHHcC
Confidence 3789999999997 4689999998 4899999999988652 1 1235666665 45677888776
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 006923 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (625)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~ 299 (625)
...+|+ .|.+..| ..|.|.++-.... ++.+ .-+++.|.+-|++.-
T Consensus 65 ~~~~~~---~i~~~~~------------------------~~~~g~~~al~~~-----~~~~---~~~~~lv~~~D~~~~ 109 (217)
T cd04181 65 GSKFGV---NIEYVVQ------------------------EEPLGTAGAVRNA-----EDFL---GDDDFLVVNGDVLTD 109 (217)
T ss_pred hhhcCc---eEEEEeC------------------------CCCCccHHHHHHh-----hhhc---CCCCEEEEECCeecC
Confidence 543332 1221110 0134544433322 1222 457888888898432
Q ss_pred cccchHHHHHHhhcCCceeeeeccCCccCccceE
Q 006923 300 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (625)
Q Consensus 300 ~~~DP~~lG~~~~~~~~~~~kvv~r~~~E~vG~i 333 (625)
... -.++-++..+++++.+-+.+......-|.+
T Consensus 110 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (217)
T cd04181 110 LDL-SELLRFHREKGADATIAVKEVEDPSRYGVV 142 (217)
T ss_pred cCH-HHHHHHHHhcCCCEEEEEEEcCCCCcceEE
Confidence 222 334566777888877766654434444554
No 28
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=97.44 E-value=0.0012 Score=71.41 Aligned_cols=158 Identities=9% Similarity=0.073 Sum_probs=92.5
Q ss_pred ceEEEEEcCCccccCC---ccCCcccCCCcCCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 006923 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (625)
Q Consensus 140 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (625)
++.+|+||||.||||. .+.||.++|+. |+ ++++++++.+.+. + ---++|.++..-.+.+.+
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~---gk~PlIe~~l~~L~~~----G--------i~~I~iv~~~~~~~~I~~ 66 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFG---GRYRLIDFPLSNMVNA----G--------IRNVFIFFKNKERQSLFD 66 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccC---CeeeEEEEEhhhhhcc----C--------CCEEEEEeCCCcHHHHHH
Confidence 5678999999999996 48999999994 88 8999999998653 2 123556666554459999
Q ss_pred HHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCC
Q 006923 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (625)
Q Consensus 216 ~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vD 295 (625)
+|.+...||++..+ ..+..+. . .+ ..|-|.|+.+..... .+.+...+-+.+.+.+-|
T Consensus 67 ~l~~~~~~~~~~~~------~~~~~~~-------~--~e-----~~~l~tg~~~a~~~a---~~~l~~~~~~~~lvlnGD 123 (369)
T TIGR02092 67 HLGSGREWDLHRKR------DGLFVFP-------Y--ND-----RDDLSEGGKRYFSQN---LEFLKRSTSEYTVVLNSH 123 (369)
T ss_pred HHhCCCCCCccccc------CcEEEEe-------c--cC-----CCCcccChHHHHHHH---HHHHHhCCCCEEEEECCC
Confidence 99876667765221 1111110 1 11 123333444422221 222222234788889999
Q ss_pred CccccccchHHHHHHhhcCCceeeeeccCC--ccCccceEEEE
Q 006923 296 NGLLFKAIPASLGVSATKQYHVNSLAVPRK--AKEAIGGITRL 336 (625)
Q Consensus 296 N~L~~~~DP~~lG~~~~~~~~~~~kvv~r~--~~E~vG~i~~~ 336 (625)
+ +...---.++-++.++++++.+-+.+-. ....-|+++.+
T Consensus 124 ~-l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~ 165 (369)
T TIGR02092 124 M-VCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRF 165 (369)
T ss_pred E-EEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEE
Confidence 7 4332222456677777887755443321 12334555443
No 29
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.43 E-value=0.0065 Score=68.34 Aligned_cols=187 Identities=18% Similarity=0.182 Sum_probs=105.4
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
.++.|+||||.||||+.+.||.++|+. +++++++.++++.+. + .-.++|.++.. .+.+.++++.
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~llpi~---gkpli~~~l~~l~~~----g--------~~~iivvv~~~-~~~i~~~~~~ 67 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKVLHTLA---GRSMLGHVLHAAAGL----A--------PQHLVVVVGHD-RERVAPAVAE 67 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCceeceeC---CccHHHHHHHHHHhc----C--------CCcEEEEECCC-HHHHHHHhhc
Confidence 568899999999999988899999984 899999999988653 1 23567777654 5567777754
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCch-hhHHHhhcChHHHHHHcCceEEEEEeCCCcc
Q 006923 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (625)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L 298 (625)
... .+.+..| ..|.|.|+ ++.++. .+....-++++|.+.|+++
T Consensus 68 ~~~------~~~~~~~------------------------~~~~Gt~~si~~al~------~l~~~~~~~vlV~~gD~P~ 111 (482)
T PRK14352 68 LAP------EVDIAVQ------------------------DEQPGTGHAVQCALE------ALPADFDGTVVVTAGDVPL 111 (482)
T ss_pred cCC------ccEEEeC------------------------CCCCCcHHHHHHHHH------HhccCCCCeEEEEeCCeec
Confidence 210 1111111 11334333 444443 2222234678888999976
Q ss_pred ccccch-HHHHHHhhcCCceeeeeccCCccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCCCCCCc
Q 006923 299 LFKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 377 (625)
Q Consensus 299 ~~~~DP-~~lG~~~~~~~~~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~ 377 (625)
....+. .++-.+..++.++...+.+......-|.+.. ..+|+.. ..+|....++. ... .. .
T Consensus 112 ~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~--~~~g~V~-~~~EKp~~~~~---------~~~----~~--~ 173 (482)
T PRK14352 112 LDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILR--DQDGEVT-AIVEQKDATPS---------QRA----IR--E 173 (482)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEE--CCCCCEE-EEEECCCCCHH---------Hhh----cc--e
Confidence 443222 2344444556555444333333334565432 3456531 12444332111 000 01 2
Q ss_pred cceeeEEEehhhhHHHHhh
Q 006923 378 GNINQLILELGPYMEELKK 396 (625)
Q Consensus 378 gNinn~~~~l~~l~~~l~~ 396 (625)
.|+..++|+-+.|.+.+++
T Consensus 174 ~~~Giy~f~~~~l~~~~~~ 192 (482)
T PRK14352 174 VNSGVYAFDAAVLRSALAR 192 (482)
T ss_pred EEEEEEEEEHHHHHHHHHh
Confidence 3888899998766666543
No 30
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.40 E-value=0.0061 Score=67.58 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=48.8
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
++..|+||||.||||+...||.++|+. |++++++.++.+... + .-.++|.++. .++.+.+++.+
T Consensus 5 ~~~aiILAaG~gsR~~~~~pK~ll~v~---gkpli~~~l~~l~~~----g--------i~~ivvv~~~-~~~~i~~~~~~ 68 (446)
T PRK14353 5 TCLAIILAAGEGTRMKSSLPKVLHPVA---GRPMLAHVLAAAASL----G--------PSRVAVVVGP-GAEAVAAAAAK 68 (446)
T ss_pred cceEEEEcCCCCCccCCCCCcccCEEC---CchHHHHHHHHHHhC----C--------CCcEEEEECC-CHHHHHHHhhc
Confidence 568899999999999977899999984 899999999988652 1 1245566655 45667776653
No 31
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.38 E-value=0.0059 Score=67.76 Aligned_cols=208 Identities=12% Similarity=0.123 Sum_probs=113.6
Q ss_pred hhcceEEEEEcCCccccCCc---cCCcccCCCcCCCCcc-hHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHH
Q 006923 137 EAKNAAFVLVAGGLGERLGY---NGIKVALPAETTTGTC-FLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSR 212 (625)
Q Consensus 137 ~l~kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~~~s-~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~ 212 (625)
+-.++.+|+||||.||||.- ..||.++|+. |++ ++++.++++... + .-.++|.|. ...+.
T Consensus 12 ~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~---gkp~lI~~~l~~l~~~----G--------i~~i~vv~~-~~~~~ 75 (425)
T PRK00725 12 LTRDTLALILAGGRGSRLKELTDKRAKPAVYFG---GKFRIIDFALSNCINS----G--------IRRIGVLTQ-YKAHS 75 (425)
T ss_pred hhcceEEEEECCCCCCcchhhhCCCcceeEEEC---CEEEEhHHHHHHHHHC----C--------CCeEEEEec-CCHHH
Confidence 33588999999999999975 7999999994 886 999999988652 2 123566666 46788
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEE
Q 006923 213 TQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFF 292 (625)
Q Consensus 213 T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~ 292 (625)
+.++|.+. +++.+.++ ...+. ++.+.......-.|-|.|+-.... ++.+....-+++.|.
T Consensus 76 i~~~~~~~--~~~~~~~~----~~~i~---------i~~~~~~~~~e~~~lGTa~al~~a-----~~~l~~~~~d~~lVl 135 (425)
T PRK00725 76 LIRHIQRG--WSFFREEL----GEFVD---------LLPAQQRVDEENWYRGTADAVYQN-----LDIIRRYDPKYVVIL 135 (425)
T ss_pred HHHHHHhh--hcccccCC----CCeEE---------EeCCcccCCCCccccCcHHHHHHH-----HHHHHhcCCCEEEEe
Confidence 88888753 23211110 00010 010011111123456776644332 233332334678888
Q ss_pred eCCCccccccchHHHHHHhhcCCceeeeeccC--CccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCC
Q 006923 293 QDTNGLLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (625)
Q Consensus 293 ~vDN~L~~~~DP~~lG~~~~~~~~~~~kvv~r--~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~ 370 (625)
+-|+ +...---.++-++..+++++.+-+... .....-|.+. + ..+|+ + +++.|.+..... ....
T Consensus 136 ~gD~-l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~-~-d~~~~--V--~~~~EKp~~~~~-------~~~~ 201 (425)
T PRK00725 136 AGDH-IYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMA-V-DENDR--I--TAFVEKPANPPA-------MPGD 201 (425)
T ss_pred cCCe-EeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEE-E-CCCCC--E--EEEEECCCCccc-------cccC
Confidence 8888 332212245667777788776655331 2223446554 2 22343 2 344333211000 0000
Q ss_pred CCCCCCccceeeEEEehhhhHHHHhh
Q 006923 371 TGYSPFPGNINQLILELGPYMEELKK 396 (625)
Q Consensus 371 ~gf~~f~gNinn~~~~l~~l~~~l~~ 396 (625)
.. .+..|+..+.|+-+.+.+.|.+
T Consensus 202 ~~--~~l~n~GIYi~~~~~L~~~L~~ 225 (425)
T PRK00725 202 PD--KSLASMGIYVFNADYLYELLEE 225 (425)
T ss_pred cc--ceEEEeeEEEEeHHHHHHHHHH
Confidence 00 1134899999998877666643
No 32
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=97.37 E-value=0.0035 Score=61.93 Aligned_cols=137 Identities=18% Similarity=0.223 Sum_probs=80.8
Q ss_pred EEEEcCCccccCCc---cCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCccccc-EEEecCccchHHHHHHHH
Q 006923 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 218 (625)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iP-l~IMTS~~T~~~T~~~l~ 218 (625)
+|+||||.|+||+- ..||.++|+. |+++++..++.+... .+. ++|.| ....+.+.+++.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~---g~pli~~~l~~l~~~-------------g~~~v~vv~-~~~~~~i~~~~~ 63 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVA---GRPFLEYLLEYLARQ-------------GISRIVLSV-GYLAEQIEEYFG 63 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEEC---CcchHHHHHHHHHHC-------------CCCEEEEEc-ccCHHHHHHHHc
Confidence 47899999999964 5899999985 899999999888642 233 45555 455677888887
Q ss_pred hCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCch-hhHHHhhcChHHHHHHcCceEEEEEeCCCc
Q 006923 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (625)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sGlL~~l~~~G~~yi~v~~vDN~ 297 (625)
....+|. .+. ... . ..+-|.++ ++.++. .+ +-+++.+.+.|++
T Consensus 64 ~~~~~~~---~~~--------~~~----------~------~~~~G~~~~l~~a~~------~~---~~~~~lv~~~D~~ 107 (223)
T cd06915 64 DGYRGGI---RIY--------YVI----------E------PEPLGTGGAIKNALP------KL---PEDQFLVLNGDTY 107 (223)
T ss_pred CccccCc---eEE--------EEE----------C------CCCCcchHHHHHHHh------hc---CCCCEEEEECCcc
Confidence 5332221 111 110 0 12345543 444432 22 2367888888986
Q ss_pred cccccchHHHHHHhhcCCceeeeeccCCccCccceE
Q 006923 298 LLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (625)
Q Consensus 298 L~~~~DP~~lG~~~~~~~~~~~kvv~r~~~E~vG~i 333 (625)
+....+ .++-.+.+.+.++.+-+.+......-|.+
T Consensus 108 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (223)
T cd06915 108 FDVDLL-ALLAALRASGADATMALRRVPDASRYGNV 142 (223)
T ss_pred cCCCHH-HHHHHHHhCCCcEEEEEEECCCCCcceeE
Confidence 533332 23444556677777766553223344543
No 33
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=97.36 E-value=0.0053 Score=61.70 Aligned_cols=68 Identities=29% Similarity=0.383 Sum_probs=52.3
Q ss_pred EEEEEcCCccccCC---ccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006923 142 AFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (625)
Q Consensus 142 avvlLaGGlGTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (625)
.+|+||||.||||+ ...||.++|+. |+++++..++.+.+. + .-.++|.|+. ..+.+.++++
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~l~~i~---g~~li~~~l~~l~~~----~--------~~~i~vv~~~-~~~~~~~~~~ 65 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQLIPVA---GKPIIQYAIEDLREA----G--------IEDIGIVVGP-TGEEIKEALG 65 (236)
T ss_pred eEEEECCCccccccccccCCCceeeEEC---CcchHHHHHHHHHHC----C--------CCEEEEEcCC-CHHHHHHHhc
Confidence 57899999999996 58999999984 899999999887642 2 1246777777 7788888888
Q ss_pred hCCCCCC
Q 006923 219 SNSYFGM 225 (625)
Q Consensus 219 ~~~~FGl 225 (625)
+...+|+
T Consensus 66 ~~~~~~~ 72 (236)
T cd04189 66 DGSRFGV 72 (236)
T ss_pred chhhcCC
Confidence 7554443
No 34
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=97.36 E-value=0.0019 Score=65.47 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=51.9
Q ss_pred EEEEEcCCccccCCc---cCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006923 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (625)
Q Consensus 142 avvlLaGGlGTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (625)
-.|+||||.||||+- ..||.++|+. ++++++..++.+.+. + .-.++|.++....+...++|.
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv~---~~pli~~~l~~l~~~----g--------i~~i~vv~~~~~~~~~~~~l~ 66 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPVY---DKPMIYYPLSTLMLA----G--------IREILIISTPEDLPLFKELLG 66 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEEC---CEEhHHHHHHHHHHC----C--------CCEEEEEeCcchHHHHHHHHh
Confidence 468999999999975 7899999995 899999999887542 2 224667777666678888887
Q ss_pred hCCCCC
Q 006923 219 SNSYFG 224 (625)
Q Consensus 219 ~~~~FG 224 (625)
....+|
T Consensus 67 ~~~~~~ 72 (240)
T cd02538 67 DGSDLG 72 (240)
T ss_pred cccccC
Confidence 655444
No 35
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.35 E-value=0.0045 Score=61.78 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=50.0
Q ss_pred EEEEcCCccccCCc---cCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
.|+||||.||||+- ..||.++|+. |+++++..++.+.+. .+.-+++......+.+.+++..
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi~---g~~li~~~l~~l~~~-------------gi~~i~iv~~~~~~~i~~~~~~ 65 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPVA---GKPLIDHALDRLAAA-------------GIRRIVVNTHHLADQIEAHLGD 65 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeEC---CEEHHHHHHHHHHHC-------------CCCEEEEEccCCHHHHHHHHhc
Confidence 48899999999964 7999999984 899999999988652 2443444556678889999886
Q ss_pred CCCCC
Q 006923 220 NSYFG 224 (625)
Q Consensus 220 ~~~FG 224 (625)
.++|
T Consensus 66 -~~~~ 69 (221)
T cd06422 66 -SRFG 69 (221)
T ss_pred -ccCC
Confidence 4444
No 36
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.32 E-value=0.0028 Score=63.00 Aligned_cols=135 Identities=20% Similarity=0.235 Sum_probs=79.1
Q ss_pred EEEEcCCccccCC---ccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCccccc-EEEecCccchHHHHHHHH
Q 006923 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 218 (625)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iP-l~IMTS~~T~~~T~~~l~ 218 (625)
+|+||||.|+||+ ...||.++|+. |+++++..++++... .+. ++|.++. ..+.+.+++.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~---g~pli~~~l~~l~~~-------------~~~~iivv~~~-~~~~i~~~~~ 63 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVG---GKPILETIIDRFIAQ-------------GFRNFYISVNY-LAEMIEDYFG 63 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeEC---CcchHHHHHHHHHHC-------------CCcEEEEECcc-CHHHHHHHHC
Confidence 5899999999996 47899999984 899999999988653 222 3455554 4667777777
Q ss_pred hCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCcc
Q 006923 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (625)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L 298 (625)
+...+|+ ++.+. . ++ .|.|-|+....+. +..-+++.+...|+..
T Consensus 64 ~~~~~~~---~i~~~----------------~--~~------~~~g~~~~l~~~~---------~~~~~~~lv~~~D~i~ 107 (220)
T cd06426 64 DGSKFGV---NISYV----------------R--ED------KPLGTAGALSLLP---------EKPTDPFLVMNGDILT 107 (220)
T ss_pred CccccCc---cEEEE----------------E--CC------CCCcchHHHHHHH---------hhCCCCEEEEcCCEee
Confidence 5432332 12111 0 10 1234455443322 1224677788888733
Q ss_pred ccccchHHHHHHhhcCCceeeeeccCCccCccc
Q 006923 299 LFKAIPASLGVSATKQYHVNSLAVPRKAKEAIG 331 (625)
Q Consensus 299 ~~~~DP~~lG~~~~~~~~~~~kvv~r~~~E~vG 331 (625)
..... .++-.+...+.++..-+.+..+...-|
T Consensus 108 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~g 139 (220)
T cd06426 108 NLNYE-HLLDFHKENNADATVCVREYEVQVPYG 139 (220)
T ss_pred ccCHH-HHHHHHHhcCCCEEEEEEEcCCCCcce
Confidence 22332 345556666777766555533333344
No 37
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.32 E-value=0.0049 Score=68.34 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=47.3
Q ss_pred eEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
+++|+||||.|||||.+.||.++|+ .+++++++.++.+.+. + ....+|.+.. ..+.+.+++++
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~~----g--------~~~iivvv~~-~~~~i~~~~~~ 64 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPL---GGKSLVERVLDSCEEL----K--------PDRRLVIVGH-QAEEVEQSLAH 64 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEE---CChhHHHHHHHHHHhC----C--------CCeEEEEECC-CHHHHHHHhcc
Confidence 6789999999999998899999998 4899999999988652 1 2245555654 34456666653
No 38
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.32 E-value=0.008 Score=60.94 Aligned_cols=128 Identities=18% Similarity=0.126 Sum_probs=75.5
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
++++|+||||.++||+ +|.++|+ .|++++++.++++... .+.-+++.+. ++.+.+++.+
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~Ll~i---~Gkpll~~~l~~l~~~-------------~i~~ivvv~~--~~~i~~~~~~ 60 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKPLADI---GGKPMIVRVYERASKA-------------GADRVVVATD--DERIADAVEA 60 (245)
T ss_pred ceEEEEecCCCCCCCC---CCccccc---CCcCHHHHHHHHHHhc-------------CCCeEEEECC--cHHHHHHHHH
Confidence 5788999999999995 7999998 4999999999988653 1222233332 4677777764
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 006923 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (625)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~ 299 (625)
. |. .+ +... . ..+.|.+.+..++. .+...+-+++.+.+.|+++.
T Consensus 61 ~---~~---~v----------~~~~---------~-----~~~~gt~~~~~~~~------~~~~~~~~~vlv~~~D~Pli 104 (245)
T PRK05450 61 F---GG---EV----------VMTS---------P-----DHPSGTDRIAEAAA------KLGLADDDIVVNVQGDEPLI 104 (245)
T ss_pred c---CC---EE----------EECC---------C-----cCCCchHHHHHHHH------hcCCCCCCEEEEecCCCCCC
Confidence 2 21 11 1100 0 11334444443322 22112346788889999865
Q ss_pred cccch-HHHHHHhhcCCceeeeeccC
Q 006923 300 FKAIP-ASLGVSATKQYHVNSLAVPR 324 (625)
Q Consensus 300 ~~~DP-~~lG~~~~~~~~~~~kvv~r 324 (625)
...+. .++-.+..++.++..-++++
T Consensus 105 ~~~~l~~li~~~~~~~~~~~~~~~~~ 130 (245)
T PRK05450 105 PPEIIDQVAEPLANPEADMATLAVPI 130 (245)
T ss_pred CHHHHHHHHHHHhcCCCCeEeeeeec
Confidence 43322 34444444556666666554
No 39
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.29 E-value=0.006 Score=67.76 Aligned_cols=145 Identities=14% Similarity=0.113 Sum_probs=85.7
Q ss_pred ceEEEEEcCCccccCC---ccCCcccCCCcCCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 006923 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (625)
Q Consensus 140 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (625)
++.+|+||||.||||. .+.||.++|+. |+ +++++.++++.. ++ .-.++|.|+ ...+.+.+
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi~---gk~plI~~~L~~l~~----~G--------i~~vivv~~-~~~~~i~~ 66 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPLA---GKYRLIDIPISNCIN----SG--------INKIYVLTQ-FNSASLNR 66 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEEC---CeeEEeHHHHHHHHH----CC--------CCEEEEEec-CCHHHHHH
Confidence 6788999999999997 48999999984 88 999999998865 22 123566666 47788999
Q ss_pred HHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCC
Q 006923 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (625)
Q Consensus 216 ~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vD 295 (625)
+|.+..+|+.. ..+.+..+... ... .-...+-|.|+-.... ++.+....-+++.|.+-|
T Consensus 67 ~l~~~~~~~~~-------~~g~~~i~~~~--------~~~-~~~~~~lGTa~al~~a-----~~~l~~~~~~~~lVl~gD 125 (429)
T PRK02862 67 HISQTYNFDGF-------SGGFVEVLAAQ--------QTP-ENPSWFQGTADAVRKY-----LWHFQEWDVDEYLILSGD 125 (429)
T ss_pred HHhcCcCcccc-------CCCEEEEeCCc--------ccC-CCCccccCcHHHHHHH-----HHHHHhcCCCEEEEecCC
Confidence 99764322210 00111111000 000 0001225776654432 222323334678888888
Q ss_pred Cccccccc-hHHHHHHhhcCCceeeeecc
Q 006923 296 NGLLFKAI-PASLGVSATKQYHVNSLAVP 323 (625)
Q Consensus 296 N~L~~~~D-P~~lG~~~~~~~~~~~kvv~ 323 (625)
+ +.. .| -.++-++.++++++.+-+.+
T Consensus 126 ~-l~~-~dl~~ll~~h~~~~a~~tl~~~~ 152 (429)
T PRK02862 126 Q-LYR-MDYRLFVQHHRETGADITLAVLP 152 (429)
T ss_pred E-EEe-CCHHHHHHHHHHcCCCEEEEEEe
Confidence 8 443 23 24566777778877665533
No 40
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=97.26 E-value=0.0037 Score=69.50 Aligned_cols=216 Identities=15% Similarity=0.189 Sum_probs=116.5
Q ss_pred cceEEEEEcCCccccCC---ccCCcccCCCcCCCCc-chHHHHHHHHHHHHHHhhhhccCCccccc-EEEecCccchHHH
Q 006923 139 KNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRT 213 (625)
Q Consensus 139 ~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iP-l~IMTS~~T~~~T 213 (625)
.++.+|+||||.||||. ...||.++|+. |+ +++++.++.+... + |- ++|.|. ...+..
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~---g~~plId~~L~~l~~~----G---------i~~i~iv~~-~~~~~i 64 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPIG---GNYRLIDIPMSNCINS----G---------INKIYVLTQ-FNSASL 64 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEeC---CcceEehHHHHHHHhC----C---------CCEEEEEec-cCHHHH
Confidence 36788999999999997 58999999984 65 9999998888542 2 22 355554 577889
Q ss_pred HHHHHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEe
Q 006923 214 QELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 293 (625)
Q Consensus 214 ~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~ 293 (625)
.++|++..+|+.... +.++.+..+.. . .+. .-...|.|.||....... .+++...++-+++.+.+
T Consensus 65 ~~~l~~~~~~~~~~~----~~~~~~~i~~~------~--q~~-~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~ 129 (436)
T PLN02241 65 NRHLSRAYNFGNGGN----FGDGFVEVLAA------T--QTP-GEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILS 129 (436)
T ss_pred HHHHhccCCCCCCcc----cCCCCEEEcCC------c--ccC-CCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEec
Confidence 999985433432110 11111111100 0 000 011257888776544322 23322212357888888
Q ss_pred CCCccccccch-HHHHHHhhcCCceeeeecc--CCccCccceEEEEecCCCceeEEEEeccCccHHHH--hcCCCCCCC-
Q 006923 294 DTNGLLFKAIP-ASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLR--ATGFPDGDV- 367 (625)
Q Consensus 294 vDN~L~~~~DP-~~lG~~~~~~~~~~~kvv~--r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~--~~~~~~g~l- 367 (625)
-|+ +. ..|. .++-++.++++++..-+.+ +.....-|++.. ..+|+ + ++|.|.+..-. ..+.+ ..+
T Consensus 130 gD~-v~-~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~--d~~~~--v--~~~~Ekp~~~~~~~~~~~-~~~~ 200 (436)
T PLN02241 130 GDH-LY-RMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKI--DDTGR--I--IEFSEKPKGDELKAMQVD-TTVL 200 (436)
T ss_pred CCe-EE-ccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEE--CCCCC--E--EEEEECCCCccccccccc-cccc
Confidence 898 43 3343 4567777788876544332 222355676543 23443 3 56666542100 00000 000
Q ss_pred --C--CCCCCCCCccceeeEEEehhhhHHHHhh
Q 006923 368 --N--CETGYSPFPGNINQLILELGPYMEELKK 396 (625)
Q Consensus 368 --~--~~~gf~~f~gNinn~~~~l~~l~~~l~~ 396 (625)
+ +.+.. ..-.|+..+.|+-+.+..+++.
T Consensus 201 ~~~~~~~~~~-~~~~~~GIyi~~~~~l~~ll~~ 232 (436)
T PLN02241 201 GLSPEEAKEK-PYIASMGIYVFKKDVLLKLLRW 232 (436)
T ss_pred cccccccccc-ceEEEeEEEEEEHHHHHHHHHh
Confidence 0 00000 1124888899998776666643
No 41
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.22 E-value=0.0036 Score=70.54 Aligned_cols=146 Identities=20% Similarity=0.200 Sum_probs=84.8
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
++.+|+||||.||||+...||.++|+. +++++++.++++.+. + --.++|.+.. ..+.+.++|+.
T Consensus 7 ~~~avILAaG~gtRl~~~~pK~llpi~---gkpli~~~l~~l~~~----g--------i~~ivvv~~~-~~~~i~~~~~~ 70 (481)
T PRK14358 7 PLDVVILAAGQGTRMKSALPKVLHPVA---GRPMVAWAVKAARDL----G--------ARKIVVVTGH-GAEQVEAALQG 70 (481)
T ss_pred CceEEEECCCCCCcCCCCCCceecEEC---CeeHHHHHHHHHHhC----C--------CCeEEEEeCC-CHHHHHHHhcc
Confidence 678899999999999987899999984 899999999887642 1 1235555554 45667777642
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchh-hHHHhhcChHHHHHHcCceEEEEEeCCCcc
Q 006923 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDV-HALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (625)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi-~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L 298 (625)
+ .+.+..| + .|.|-|+- +.++ +.+ ...-+.+.+.+-|+++
T Consensus 71 ---~-----~i~~v~~------------------~------~~~Gt~~al~~~~------~~l-~~~~~~~lV~~gD~P~ 111 (481)
T PRK14358 71 ---S-----GVAFARQ------------------E------QQLGTGDAFLSGA------SAL-TEGDADILVLYGDTPL 111 (481)
T ss_pred ---C-----CcEEecC------------------C------CcCCcHHHHHHHH------HHh-hCCCCcEEEEeCCeec
Confidence 1 1222111 0 13444443 3332 222 2222235678889876
Q ss_pred ccccch-HHHHHHhhcCCceeeeeccCCccCccceEEEEecCCCc
Q 006923 299 LFKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 342 (625)
Q Consensus 299 ~~~~DP-~~lG~~~~~~~~~~~kvv~r~~~E~vG~i~~~~~~dG~ 342 (625)
....+. .++-.+.+++.++.+-+.+.....+-|.+.. ..+|+
T Consensus 112 i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~--d~~g~ 154 (481)
T PRK14358 112 LRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVR--GADGA 154 (481)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEE--CCCCC
Confidence 544333 3456666677766544433322334566542 33454
No 42
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.21 E-value=0.0093 Score=66.17 Aligned_cols=176 Identities=16% Similarity=0.108 Sum_probs=101.3
Q ss_pred EEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCC
Q 006923 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNS 221 (625)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~ 221 (625)
.+|+||||.||||+...||.++|+. +++++++.++.+... . -.++|.++.. .+.+.+++..
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v~---gkpli~~~l~~l~~~----~---------~~i~vv~~~~-~~~i~~~~~~-- 62 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKIS---GKPMINWVIDTAKKV----A---------QKVGVVLGHE-AELVKKLLPE-- 62 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEEC---CeeHHHHHHHHHHhc----C---------CcEEEEeCCC-HHHHHHhccc--
Confidence 4689999999999988999999984 899999999987652 1 1245555543 3455555431
Q ss_pred CCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCch-hhHHHhhcChHHHHHHcCceEEEEEeCCCcccc
Q 006923 222 YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (625)
Q Consensus 222 ~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~~ 300 (625)
.+.++.|+ .|.|-++ ++.++. .+ . .-+++++.+-|+++..
T Consensus 63 -------~~~~~~~~------------------------~~~g~~~ai~~a~~------~l-~-~~~~vlv~~gD~p~i~ 103 (448)
T PRK14357 63 -------WVKIFLQE------------------------EQLGTAHAVMCARD------FI-E-PGDDLLILYGDVPLIS 103 (448)
T ss_pred -------ccEEEecC------------------------CCCChHHHHHHHHH------hc-C-cCCeEEEEeCCcccCC
Confidence 11222111 1224333 333332 12 1 1368999999997654
Q ss_pred ccc-hHHHHHHhhcCCceeeeeccCCccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCCCCCCccc
Q 006923 301 KAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 379 (625)
Q Consensus 301 ~~D-P~~lG~~~~~~~~~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gN 379 (625)
..| -.++-.+.++++++...+++......-|.+. . .+|+... +|....+... . . .+-.|
T Consensus 104 ~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~-~--d~g~v~~--~e~~~~~~~~----------~----~-~~~~~ 163 (448)
T PRK14357 104 ENTLKRLIEEHNRKGADVTILVADLEDPTGYGRII-R--DGGKYRI--VEDKDAPEEE----------K----K-IKEIN 163 (448)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEE-E--cCCeEEE--EECCCCChHH----------h----c-CcEEE
Confidence 444 2356666677888776665533233446543 2 2565433 5643221110 0 0 11248
Q ss_pred eeeEEEehhhhHHHHh
Q 006923 380 INQLILELGPYMEELK 395 (625)
Q Consensus 380 inn~~~~l~~l~~~l~ 395 (625)
+..++|+-+.+.+.++
T Consensus 164 ~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 164 TGIYVFSGDFLLEVLP 179 (448)
T ss_pred eEEEEEEHHHHHHHHH
Confidence 9999999776666554
No 43
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=97.21 E-value=0.0045 Score=61.10 Aligned_cols=138 Identities=14% Similarity=0.161 Sum_probs=83.4
Q ss_pred EEEEcCCccccCC---ccCCcccCCCcCCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006923 143 FVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (625)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (625)
+|+||||.||||. .+.||.++|+. ++ +++++.++.+... + .-.++|.|+.. .+.+.++|.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~----g--------i~~iivv~~~~-~~~i~~~~~ 64 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFG---GRYRLIDFPLSNMVNS----G--------IRNVGVLTQYK-SRSLNDHLG 64 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEEC---CeeeeHHHHHHHHHHC----C--------CCEEEEEeCCC-hHHHHHHHh
Confidence 3789999999996 47999999984 77 9999999988652 2 23467777765 788888998
Q ss_pred hCCCCCCCCC--cEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCC
Q 006923 219 SNSYFGMKPT--QVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (625)
Q Consensus 219 ~~~~FGl~~~--~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN 296 (625)
+...||++.. .+.+ +. +.. ....-.|-|.|+-...-. +.+....-+.+.|.+-|+
T Consensus 65 ~~~~~~~~~~~~~~~~----------------~~-~~~-~~~~~~~~Gta~al~~a~-----~~i~~~~~~~~lv~~gD~ 121 (200)
T cd02508 65 SGKEWDLDRKNGGLFI----------------LP-PQQ-RKGGDWYRGTADAIYQNL-----DYIERSDPEYVLILSGDH 121 (200)
T ss_pred CCCcccCCCCCCCEEE----------------eC-ccc-CCCCCcccCcHHHHHHHH-----HHHHhCCCCEEEEecCCE
Confidence 7665665411 1111 11 000 001235667666444322 223233347777888888
Q ss_pred ccccccchHHHHHHhhcCCceeee
Q 006923 297 GLLFKAIPASLGVSATKQYHVNSL 320 (625)
Q Consensus 297 ~L~~~~DP~~lG~~~~~~~~~~~k 320 (625)
+....--.++-++.+++.++..-
T Consensus 122 -v~~~~~~~~l~~~~~~~~~~t~~ 144 (200)
T cd02508 122 -IYNMDYREMLDFHIESGADITVV 144 (200)
T ss_pred -EEecCHHHHHHHHHHcCCCEEEE
Confidence 43322234566666666655443
No 44
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=97.17 E-value=0.0068 Score=62.10 Aligned_cols=151 Identities=13% Similarity=0.114 Sum_probs=85.7
Q ss_pred EEEEcCCccccCC---ccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCccccc-EEEecCccchHHHHHHHH
Q 006923 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 218 (625)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iP-l~IMTS~~T~~~T~~~l~ 218 (625)
+|+||||.||||. .+.||.++|+. +++++++.++.+.+. .+. ++|.++ ...+.+.++++
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~---~~p~i~~~~~~~~~~-------------gi~~i~iv~~-~~~~~i~~~~~ 63 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIG---GRPILWHIMKIYSHY-------------GHNDFILCLG-YKGHVIKEYFL 63 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEEC---CEEHHHHHHHHHHhC-------------CCceEEEECC-CCHHHHHHHHH
Confidence 4789999999996 47999999984 899998877766542 233 444444 56788999998
Q ss_pred hCCCCCCCCCcEEEEEecceeEEecCCCceecCCC--CCCcc----ccccCCCchh-hHHHhhcChHHHHHHcCceEEEE
Q 006923 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPK--NKYRI----QTKPHGHGDV-HALLYSSGLLKEWHDAGLKWVLF 291 (625)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~--~~~~i----~~~P~GhGdi-~~aL~~sGlL~~l~~~G~~yi~v 291 (625)
+...+|. ++.+-.| ++++...+. .++.+ ...|-|.|+- +.++ +.+ ..+ +++.+
T Consensus 64 ~~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~------~~~-~~~-~~~lv 123 (253)
T cd02524 64 NYFLHNS---DVTIDLG---------TNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVR------RYL-GDD-ETFML 123 (253)
T ss_pred hhhhhcC---ceeEeec---------ccceeeecccccccceeecccCcccccHHHHHHHH------Hhc-CCC-CeEEE
Confidence 8654442 2222111 111110000 01111 1224555543 3332 112 111 78889
Q ss_pred EeCCCccccccchHHHHHHhhcCCceeeeeccCCccCccceE
Q 006923 292 FQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (625)
Q Consensus 292 ~~vDN~L~~~~DP~~lG~~~~~~~~~~~kvv~r~~~E~vG~i 333 (625)
.+-|++..... -.++-++...++++...++. +....|++
T Consensus 124 ~~gD~i~~~dl-~~ll~~h~~~~~~~tl~~~~--~~~~~g~v 162 (253)
T cd02524 124 TYGDGVSDVNI-NALIEFHRSHGKLATVTAVH--PPGRFGEL 162 (253)
T ss_pred EcCCEEECCCH-HHHHHHHHHcCCCEEEEEec--CCCcccEE
Confidence 99998544444 34556666778877665543 33444654
No 45
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=97.13 E-value=0.016 Score=59.41 Aligned_cols=176 Identities=14% Similarity=0.150 Sum_probs=98.0
Q ss_pred EEEcCC--ccccCCc---cCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCccccc-EEEecCccchHHHHHHH
Q 006923 144 VLVAGG--LGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELL 217 (625)
Q Consensus 144 vlLaGG--lGTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iP-l~IMTS~~T~~~T~~~l 217 (625)
|+|||| .||||.- ..||.++|+. |++++++.++.+..+ + .+. ++|.+. ...+.+.+++
T Consensus 2 iIla~G~~~GtRl~plt~~~PK~llpv~---g~plI~~~l~~l~~~---~---------gi~~i~iv~~-~~~~~i~~~l 65 (257)
T cd06428 2 VILVGGPQKGTRFRPLSLDVPKPLFPVA---GKPMIHHHIEACAKV---P---------DLKEVLLIGF-YPESVFSDFI 65 (257)
T ss_pred EEEccCCCCCcccCCccCCCCcccCeEC---CeeHHHHHHHHHHhc---C---------CCcEEEEEec-CCHHHHHHHH
Confidence 678888 8999975 7899999984 899999998887642 1 233 344444 4778888998
Q ss_pred HhCC-CCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCC
Q 006923 218 ESNS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (625)
Q Consensus 218 ~~~~-~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN 296 (625)
.+.. .+|+ .|.+..| ..|-|.|+-.... .+.+....-+++.|.+-|+
T Consensus 66 ~~~~~~~~~---~i~~~~~------------------------~~~~Gt~~al~~a-----~~~l~~~~~~~~lv~~gD~ 113 (257)
T cd06428 66 SDAQQEFNV---PIRYLQE------------------------YKPLGTAGGLYHF-----RDQILAGNPSAFFVLNADV 113 (257)
T ss_pred HhcccccCc---eEEEecC------------------------CccCCcHHHHHHH-----HHHhhccCCCCEEEEcCCe
Confidence 7642 2232 1111100 1233444433221 1222222346788888888
Q ss_pred ccccccc-hHHHHHHhhcCCceeeeeccC--CccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCCC
Q 006923 297 GLLFKAI-PASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGY 373 (625)
Q Consensus 297 ~L~~~~D-P~~lG~~~~~~~~~~~kvv~r--~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf 373 (625)
+ .. .| -.++-++.++++++.+-+.+. .....-|++. +...+|+. .++.|-+. .+ .
T Consensus 114 ~-~~-~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~-~d~~~g~v----~~~~Ekp~------~~---~------ 171 (257)
T cd06428 114 C-CD-FPLQELLEFHKKHGASGTILGTEASREQASNYGCIV-EDPSTGEV----LHYVEKPE------TF---V------ 171 (257)
T ss_pred e-cC-CCHHHHHHHHHHcCCCEEEEEEEccccccccccEEE-EeCCCCeE----EEEEeCCC------Cc---c------
Confidence 4 32 23 345777888888876555432 2233446543 31134532 23322211 00 0
Q ss_pred CCCccceeeEEEehhhh
Q 006923 374 SPFPGNINQLILELGPY 390 (625)
Q Consensus 374 ~~f~gNinn~~~~l~~l 390 (625)
+. ..|+..++|+-+.+
T Consensus 172 ~~-~~~~Giyi~~~~~~ 187 (257)
T cd06428 172 SD-LINCGVYLFSPEIF 187 (257)
T ss_pred cc-eEEEEEEEECHHHH
Confidence 11 24999999998754
No 46
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=97.13 E-value=0.00048 Score=69.92 Aligned_cols=65 Identities=25% Similarity=0.306 Sum_probs=50.4
Q ss_pred eEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
|++|+||||.|+|||.+.||..+++ .|++++++.++.+.+.. .-=-++|..+....+.+++++.+
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l---~Gkpvl~~tl~~f~~~~-----------~i~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLEL---GGKPVLEYTLEAFLASP-----------EIDEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEE---TTEEHHHHHHHHHHTTT-----------TESEEEEEESGGGHHHHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCeeeEE---CCeEeHHHHHHHHhcCC-----------CCCeEEEEecchhHHHHHHhhcC
Confidence 6899999999999999999999998 49999999998875431 11236667777777888888876
No 47
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=97.06 E-value=0.014 Score=60.05 Aligned_cols=159 Identities=13% Similarity=0.054 Sum_probs=87.7
Q ss_pred EEEEcCCccccCCc---cCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
+|+||||.||||+- ..||.++|+. |+++++..++.+.+. .|.-+++......+.+.++|.+
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv~---g~pii~~~l~~l~~~-------------gi~~i~iv~~~~~~~i~~~~~~ 65 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEIG---GKPILWHIMKIYSHH-------------GINDFIICCGYKGYVIKEYFAN 65 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEcCCCHHHHHHHHHh
Confidence 47889999999954 4899999984 899998887777542 3444444455668888999986
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 006923 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (625)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~ 299 (625)
...+|. ..++.+ +++.+.... ...++.. -.......|-|.|+.+..... .+ +-+++.+.+-|+ +.
T Consensus 66 ~~~~~~-~~~~~~-~~~~~~~~~-~~~~~~~---~~~~~~~~~~gt~~al~~~~~------~i--~~e~flv~~gD~-i~ 130 (254)
T TIGR02623 66 YFLHMS-DVTFHM-ADNTMEVHH-KRVEPWR---VTLVDTGESTQTGGRLKRVRE------YL--DDEAFCFTYGDG-VA 130 (254)
T ss_pred hhhccc-CeeEEe-ccccccccc-ccCCccc---eeeeecCCcCCcHHHHHHHHH------hc--CCCeEEEEeCCe-Ee
Confidence 443321 122322 233322221 1111100 000111246777765443221 11 135566888887 33
Q ss_pred cccchHHHHHHhhcCCceeeeeccCCccCccceEE
Q 006923 300 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (625)
Q Consensus 300 ~~~DP~~lG~~~~~~~~~~~kvv~r~~~E~vG~i~ 334 (625)
..---.++-++...++++.+.++. ....-|++.
T Consensus 131 ~~dl~~~~~~h~~~~~d~tl~~~~--~~~~yG~v~ 163 (254)
T TIGR02623 131 DIDIKALIAFHRKHGKKATVTAVQ--PPGRFGALD 163 (254)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEec--CCCcccEEE
Confidence 222224456667778887655442 234456654
No 48
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.03 E-value=0.0017 Score=65.88 Aligned_cols=66 Identities=23% Similarity=0.330 Sum_probs=57.3
Q ss_pred EEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCC
Q 006923 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNS 221 (625)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~ 221 (625)
..|+||.|.|+|||.+.||.++.++ |++++..++++|... ..--++|.|+....+....|+.+++
T Consensus 5 kavILAAG~GsRlg~~~PK~Lvev~---gr~ii~~~i~~L~~~------------gi~e~vvV~~g~~~~lve~~l~~~~ 69 (239)
T COG1213 5 KAVILAAGFGSRLGPDIPKALVEVG---GREIIYRTIENLAKA------------GITEFVVVTNGYRADLVEEFLKKYP 69 (239)
T ss_pred eEEEEecccccccCCCCCchhhhcC---CeEeHHHHHHHHHHc------------CCceEEEEeccchHHHHHHHHhcCC
Confidence 5789999999999999999999985 999999999888643 1345799999999999999999987
Q ss_pred C
Q 006923 222 Y 222 (625)
Q Consensus 222 ~ 222 (625)
+
T Consensus 70 ~ 70 (239)
T COG1213 70 F 70 (239)
T ss_pred c
Confidence 5
No 49
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=96.93 E-value=0.018 Score=62.03 Aligned_cols=140 Identities=19% Similarity=0.203 Sum_probs=85.6
Q ss_pred EEEEcCCccccCC---ccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
+|+||||.||||+ ...||.++|+. +++++++.++.+.+. + .-.++|+|+....+...+++.+
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv~---g~pli~~~l~~l~~~----g--------i~~i~vv~~~~~~~~i~~~~~~ 66 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPVA---NKPILQYAIEDLAEA----G--------ITDIGIVVGPVTGEEIKEIVGE 66 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEEC---CEeHHHHHHHHHHHC----C--------CCEEEEEeCCCCHHHHHHHHhc
Confidence 5889999999996 48899999984 899999998888642 1 2246788888788899999987
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 006923 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (625)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~ 299 (625)
...||++ +.+..|. .|.|.++-..+. ++.+ . +-.++ +.+-|+++-
T Consensus 67 ~~~~~~~---~~~~~~~------------------------~~~G~~~al~~a-----~~~l-~-~~~~l-i~~gD~~~~ 111 (353)
T TIGR01208 67 GERFGAK---ITYIVQG------------------------EPLGLAHAVYTA-----RDFL-G-DDDFV-VYLGDNLIQ 111 (353)
T ss_pred ccccCce---EEEEECC------------------------CCCCHHHHHHHH-----HHhc-C-CCCEE-EEECCeecC
Confidence 5555532 2222110 234554433322 1222 1 22455 555688653
Q ss_pred cccchHHHHHHhhcCCceeeeeccCCccCccceE
Q 006923 300 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (625)
Q Consensus 300 ~~~DP~~lG~~~~~~~~~~~kvv~r~~~E~vG~i 333 (625)
..+ -.++-.+.++++++.+-+.+-.....-|.+
T Consensus 112 ~~l-~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~ 144 (353)
T TIGR01208 112 DGI-SRFVKSFEEKDYDALILLTKVRDPTAFGVA 144 (353)
T ss_pred ccH-HHHHHHHHhcCCCcEEEEEECCChhhCeEE
Confidence 333 235666777788877666542222334543
No 50
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=96.89 E-value=0.012 Score=58.88 Aligned_cols=132 Identities=16% Similarity=0.116 Sum_probs=79.9
Q ss_pred EEEEcCCccccCC---ccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
+|+||||.|+||+ .+.||.++|+. +++++++.++.+.+. + --.++|.++..-.+.+++++++
T Consensus 3 aVILAgG~g~R~~plt~~~pK~Llpv~---g~pli~~~l~~l~~~----g--------~~~iivv~~~~~~~~i~~~l~~ 67 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKALLPVA---NKPMIWYPLDWLEKA----G--------FEDVIVVVPEEEQAEISTYLRS 67 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcccCEEC---CeeHHHHHHHHHHHC----C--------CCeEEEEECHHHHHHHHHHHHh
Confidence 5779999999997 47899999985 899999999888652 2 1245677766555678888876
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 006923 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (625)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~ 299 (625)
+.+ ... . ...... . ....+-|.|+........ + .+.+.+.+.|.+..
T Consensus 68 ~~~-~~~--------~---------~~~~~~--~----~~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~i~~ 114 (214)
T cd04198 68 FPL-NLK--------Q---------KLDEVT--I----VLDEDMGTADSLRHIRKK-----I----KKDFLVLSCDLITD 114 (214)
T ss_pred ccc-ccC--------c---------ceeEEE--e----cCCCCcChHHHHHHHHhh-----c----CCCEEEEeCccccc
Confidence 421 000 0 000111 0 012356777777665442 1 24466667775322
Q ss_pred cccchHHHHHHhhcCCceeeeecc
Q 006923 300 FKAIPASLGVSATKQYHVNSLAVP 323 (625)
Q Consensus 300 ~~~DP~~lG~~~~~~~~~~~kvv~ 323 (625)
... -.++-.+..+++.+.+-+.+
T Consensus 115 ~~l-~~~l~~h~~~~~~~t~~~~~ 137 (214)
T cd04198 115 LPL-IELVDLHRSHDASLTVLLYP 137 (214)
T ss_pred cCH-HHHHHHHhccCCcEEEEEec
Confidence 222 34455666667777665544
No 51
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=96.85 E-value=0.0017 Score=65.74 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=50.0
Q ss_pred eEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 006923 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (625)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (625)
+++|+||||.|+|||.+.||.++++ .|++++++.+++++... ..-.++|.|++.......++++++
T Consensus 3 ~~~iIlAaG~g~R~g~~~~K~l~~l---~gkpll~~~i~~~~~~~-----------~~~~ivVv~~~~~~~~~~~~~~~~ 68 (230)
T PRK13385 3 YELIFLAAGQGKRMNAPLNKMWLDL---VGEPIFIHALRPFLADN-----------RCSKIIIVTQAQERKHVQDLMKQL 68 (230)
T ss_pred eEEEEECCeeccccCCCCCcceeEE---CCeEHHHHHHHHHHcCC-----------CCCEEEEEeChhhHHHHHHHHHhc
Confidence 6889999999999998889999998 49999999999875421 022466777666556566666653
No 52
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=96.84 E-value=0.0018 Score=63.72 Aligned_cols=61 Identities=28% Similarity=0.416 Sum_probs=46.9
Q ss_pred EEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
..|+||||.|||||. .||.++|+. |++++++.++.+.... .-.+++.+|. .++.++.++++
T Consensus 2 ~aIILAgG~gsRmg~-~~K~Ll~i~---GkplI~~vi~~l~~~~------------i~~I~Vv~~~-~~~~~~~~l~~ 62 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKPLIEVC---GRCLIDHVLSPLLKSK------------VNNIIIATSP-HTPKTEEYINS 62 (183)
T ss_pred eEEEECCccCccCCC-CCceEeEEC---CEEHHHHHHHHHHhCC------------CCEEEEEeCC-CHHHHHHHHhh
Confidence 468999999999975 799999984 9999999999986431 1235666765 46678888764
No 53
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=96.83 E-value=0.021 Score=60.65 Aligned_cols=187 Identities=15% Similarity=0.165 Sum_probs=121.9
Q ss_pred cceEEEEEcCCccccC---CccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 006923 139 KNAAFVLVAGGLGERL---GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (625)
Q Consensus 139 ~kvavvlLaGGlGTRL---G~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (625)
..++.++|.||.|||| -++.||.+.|++ .+.+++.+++.+... .---+|+.|+++-.+--+.
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfg---n~pmI~hqieal~ns------------Gi~~I~la~~y~s~sl~~~ 72 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFG---NKPMILHQIEALINS------------GITKIVLATQYNSESLNRH 72 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccC---cchhhHHHHHHHHhC------------CCcEEEEEEecCcHHHHHH
Confidence 4688899999999998 478999999985 888888888776532 1445788899888777777
Q ss_pred HHHhCC-CCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeC
Q 006923 216 LLESNS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (625)
Q Consensus 216 ~l~~~~-~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~v 294 (625)
+.+.|. .|| ..|. |.|.+. |-|--|-..+..+ .|... .+- -.+|-+-
T Consensus 73 ~~k~y~~~lg---Vei~-~s~ete-----------------------plgtaGpl~laR~--~L~~~--~~~-~ffVLns 120 (371)
T KOG1322|consen 73 LSKAYGKELG---VEIL-ASTETE-----------------------PLGTAGPLALARD--FLWVF--EDA-PFFVLNS 120 (371)
T ss_pred HHHHhhhccc---eEEE-EEeccC-----------------------CCcccchHHHHHH--Hhhhc--CCC-cEEEecC
Confidence 877762 344 2332 233322 3333333222221 12111 111 4567776
Q ss_pred CCccccccchHHHHHHhhcCCceeeeeccCCccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCCCC
Q 006923 295 TNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYS 374 (625)
Q Consensus 295 DN~L~~~~DP~~lG~~~~~~~~~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~ 374 (625)
|= |+...--.|+-+|..+++|...-|++=...-+-|++..- ...|+ | +.+.|.|+.+...+
T Consensus 121 Dv-i~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d-~~~gr--V--~~F~EKPkd~vsnk------------- 181 (371)
T KOG1322|consen 121 DV-ICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVID-EDTGR--V--IRFVEKPKDLVSNK------------- 181 (371)
T ss_pred Ce-eecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEEe-cCCCc--e--eEehhCchhhhhcc-------------
Confidence 74 888877889999999999998888875445566776532 22343 3 77888877654322
Q ss_pred CCccceeeEEEehhhhHHHH
Q 006923 375 PFPGNINQLILELGPYMEEL 394 (625)
Q Consensus 375 ~f~gNinn~~~~l~~l~~~l 394 (625)
-|.....|+-+.+.+++
T Consensus 182 ---inaGiYi~~~~vL~ri~ 198 (371)
T KOG1322|consen 182 ---INAGIYILNPEVLDRIL 198 (371)
T ss_pred ---ccceEEEECHHHHhHhh
Confidence 26667778887776665
No 54
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=96.79 E-value=0.027 Score=63.45 Aligned_cols=196 Identities=19% Similarity=0.181 Sum_probs=101.2
Q ss_pred EEEEcCCccccCC----ccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006923 143 FVLVAGGLGERLG----YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (625)
Q Consensus 143 vvlLaGGlGTRLG----~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (625)
.|+||||.||||+ .+.||.++|+. .++|++|..++++..+ + .-..+|.|+..-.....+.++
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~~l~l~--g~~~ll~~tl~~l~~~----~--------~~~iviv~~~~~~~~~~~~l~ 68 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQFLALV--GDLTMLQQTLKRLAGL----P--------CSSPLVICNEEHRFIVAEQLR 68 (468)
T ss_pred EEEecCcccccCCccccCCCCCceeEcC--CCCcHHHHHHHHHhcC----C--------CcCcEEecCHHHHHHHHHHHH
Confidence 6899999999997 35799999983 4599999999987653 1 113446676544445566665
Q ss_pred hCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHH--cCceEEEEEeCCC
Q 006923 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHD--AGLKWVLFFQDTN 296 (625)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~--~G~~yi~v~~vDN 296 (625)
+. |++.. +++..+ .|-|-|..-.. .. ..+.+ .+=.++.|.+.|+
T Consensus 69 ~~---~~~~~------------------~~i~Ep--------~~~gTa~ai~~-aa----~~~~~~~~~~~~vlVl~~D~ 114 (468)
T TIGR01479 69 EI---GKLAS------------------NIILEP--------VGRNTAPAIAL-AA----LLAARRNGEDPLLLVLAADH 114 (468)
T ss_pred Hc---CCCcc------------------eEEecc--------cccCchHHHHH-HH----HHHHHHHCCCcEEEEecCce
Confidence 42 22211 122211 11222221111 00 11112 2345788999998
Q ss_pred ccccccc-hHHHHHH---hhcCCceeeeeccCCccCccceEEEEecCC--CceeEEEEeccCccHHHHhcCCCCCCCCCC
Q 006923 297 GLLFKAI-PASLGVS---ATKQYHVNSLAVPRKAKEAIGGITRLTHAD--GRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (625)
Q Consensus 297 ~L~~~~D-P~~lG~~---~~~~~~~~~kvv~r~~~E~vG~i~~~~~~d--G~~~v~nVEYsel~~~l~~~~~~~g~l~~~ 370 (625)
++....+ -.++-.+ .+++..+.+-+.+..|.-.-|.+..-...+ +...| ..+-|.|..-.+.. .+.
T Consensus 115 ~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t~YGyI~~~~~~~~~~~~~V--~~f~EKP~~~~a~~----~l~-- 186 (468)
T TIGR01479 115 VITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPETGYGYIRRGEPLAGEDVYQV--QRFVEKPDLATAQA----YLE-- 186 (468)
T ss_pred eecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCceEEEeCCccCCCCceEE--eEEEECCChHHHHH----HHh--
Confidence 6532111 0122222 234554555555555666778775310001 21222 23333333211110 010
Q ss_pred CC-CCCCccceeeEEEehhhhHHHHhhc
Q 006923 371 TG-YSPFPGNINQLILELGPYMEELKKT 397 (625)
Q Consensus 371 ~g-f~~f~gNinn~~~~l~~l~~~l~~~ 397 (625)
.| | ++ |+..+.|+.+.+.+.+++.
T Consensus 187 ~g~~-~w--NsGif~~~~~~ll~~l~~~ 211 (468)
T TIGR01479 187 SGDY-YW--NSGMFLFRASRYLAELKKH 211 (468)
T ss_pred cCCe-EE--EeeEEEEEHHHHHHHHHHH
Confidence 11 2 34 9999999999888888763
No 55
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=96.76 E-value=0.025 Score=60.86 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=45.8
Q ss_pred EEEEcCCccccCC---ccCCcccCCCcCCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006923 143 FVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (625)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (625)
+|+||||.||||+ .+.||.++|+. ++ +++++.++.+... + --.++|.+.. ..+.+.++|.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~----g--------i~~i~iv~~~-~~~~i~~~~~ 64 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFG---GKYRIIDFPLSNCINS----G--------IRRIGVLTQY-KSHSLNRHIQ 64 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceec---ceeeEeeehhhhhhhc----C--------CceEEEEecc-ChHHHHHHHH
Confidence 3889999999997 36899999994 78 7999998888652 2 1235666664 4556888887
Q ss_pred h
Q 006923 219 S 219 (625)
Q Consensus 219 ~ 219 (625)
+
T Consensus 65 ~ 65 (361)
T TIGR02091 65 R 65 (361)
T ss_pred h
Confidence 5
No 56
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=96.74 E-value=0.0024 Score=66.11 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=48.6
Q ss_pred cceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006923 139 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (625)
Q Consensus 139 ~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (625)
.++++|+||||.|+|||.+.||..+++. |++++++.++.+.... + .=.++|.++....+.....++
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKqll~l~---Gkpll~~tl~~~~~~~---~--------i~~IvVV~~~~~~~~~~~~~~ 88 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQYLPLL---GQPIALYSLYTFARMP---E--------VKEIVVVCDPSYRDVFEEAVE 88 (252)
T ss_pred CceEEEEEcccccccCCCCCCcceeEEC---CeEHHHHHHHHHHhCC---C--------CCeEEEEeCHHHHHHHHHHHH
Confidence 3688999999999999988999999984 9999999988776531 1 123555665554555555554
No 57
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=96.72 E-value=0.035 Score=55.67 Aligned_cols=122 Identities=17% Similarity=0.101 Sum_probs=76.4
Q ss_pred EEEEcCCccccCCc---cCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
+|+||||.||||+- ..||.++|+. ++++++..++.+... + .-.++|.|.. ..+...+++.+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~---g~~li~~~l~~l~~~----g--------i~~i~vv~~~-~~~~~~~~~~~ 64 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEIN---GKPLLERQIETLKEA----G--------IDDIVIVTGY-KKEQIEELLKK 64 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeEC---CEEHHHHHHHHHHHC----C--------CceEEEEecc-CHHHHHHHHhc
Confidence 37899999999974 5799999984 899999998887642 1 1135666665 56777777764
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCch-hhHHHhhcChHHHHHHcCceEEEEEeCCCcc
Q 006923 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (625)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L 298 (625)
. +| +.+ +. .. .+.|.|.++ ++.++ +.+ -+++.+.+.|++
T Consensus 65 ~--~~-----~~~----------------~~--~~----~~~~~g~~~s~~~~~------~~~----~~~~lv~~~D~~- 104 (229)
T cd02523 65 Y--PN-----IKF----------------VY--NP----DYAETNNIYSLYLAR------DFL----DEDFLLLEGDVV- 104 (229)
T ss_pred c--CC-----eEE----------------Ee--Cc----chhhhCcHHHHHHHH------HHc----CCCEEEEeCCEe-
Confidence 3 11 111 11 00 012445533 33322 222 267888898983
Q ss_pred ccccchHHHHHHhhcCCceeeeecc
Q 006923 299 LFKAIPASLGVSATKQYHVNSLAVP 323 (625)
Q Consensus 299 ~~~~DP~~lG~~~~~~~~~~~kvv~ 323 (625)
.++.++-.+.+.+.+..+-+.+
T Consensus 105 ---~~~~~~~~~~~~~~~~~~~~~~ 126 (229)
T cd02523 105 ---FDPSILERLLSSPADNAILVDK 126 (229)
T ss_pred ---cCHHHHHHHHcCCCCCeEEEcc
Confidence 3566777777778887665554
No 58
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=96.69 E-value=0.0038 Score=66.13 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=50.0
Q ss_pred ceEEEEEcCCccccCC---ccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 006923 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (625)
Q Consensus 140 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (625)
.+-+|+||||.||||. ...||.++|+. |++++++.++.+... + .--++|.|+. ..+.+.++
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~---gkPiI~~vl~~l~~~----G--------i~~ivivv~~-~~~~i~~~ 66 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIV---DKPMIQYIVDEIVAA----G--------IKEIVLVTHA-SKNAVENH 66 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEecC-ChHHHHHH
Confidence 4568999999999997 47899999995 899999999988642 2 1235566664 77789999
Q ss_pred HHh
Q 006923 217 LES 219 (625)
Q Consensus 217 l~~ 219 (625)
|..
T Consensus 67 ~~~ 69 (297)
T TIGR01105 67 FDT 69 (297)
T ss_pred Hhc
Confidence 864
No 59
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.63 E-value=0.077 Score=59.02 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=35.6
Q ss_pred eEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
..+|+||||.||||+...||.++|+. |++++++.++++..
T Consensus 3 ~~avIlAaG~g~Rl~~~~pK~ll~i~---Gkpli~~~l~~l~~ 42 (458)
T PRK14354 3 RYAIILAAGKGTRMKSKLPKVLHKVC---GKPMVEHVVDSVKK 42 (458)
T ss_pred ceEEEEeCCCCcccCCCCChhhCEeC---CccHHHHHHHHHHh
Confidence 46889999999999988999999984 89999999998854
No 60
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.62 E-value=0.0034 Score=60.18 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=33.7
Q ss_pred eEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
+++|+||||.|+|||. +|.++|+ .|++++++.++++..
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~---~g~~li~~~i~~l~~ 38 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPL---DGKPLLRHALDAALA 38 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCee---CCeeHHHHHHHHHHh
Confidence 4689999999999984 9999998 499999999998864
No 61
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=96.59 E-value=0.043 Score=55.40 Aligned_cols=127 Identities=19% Similarity=0.181 Sum_probs=75.3
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
++.+|+||||.++||+ ||.++|+. |++++++.++++.+. . .+.-++..+. ++.+.+++.+
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~l~~i~---gkpll~~~l~~l~~~----~--------~i~~ivvv~~--~~~i~~~~~~ 60 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKPLADIA---GKPMIQHVYERAKKA----K--------GLDEVVVATD--DERIADAVES 60 (239)
T ss_pred CEEEEEecCCCCCCCC---CCCCcccC---CcCHHHHHHHHHHhC----C--------CCCEEEEECC--cHHHHHHHHH
Confidence 4678999999999996 79999984 999999999998752 0 2332333332 4778888764
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 006923 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (625)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~ 299 (625)
+ |. . .+... + ..+.|.|++..++. .+ ....+++.+.+.|+++.
T Consensus 61 ~---~~-----~--------~~~~~--------~------~~~~gt~~~~~~~~------~~-~~~~d~vlv~~gD~Pli 103 (239)
T cd02517 61 F---GG-----K--------VVMTS--------P------DHPSGTDRIAEVAE------KL-DADDDIVVNVQGDEPLI 103 (239)
T ss_pred c---CC-----E--------EEEcC--------c------ccCchhHHHHHHHH------hc-CCCCCEEEEecCCCCCC
Confidence 2 21 1 11100 0 11345565555542 12 11247888999999875
Q ss_pred cccch-HHHHHHhhc-CCceeeeecc
Q 006923 300 FKAIP-ASLGVSATK-QYHVNSLAVP 323 (625)
Q Consensus 300 ~~~DP-~~lG~~~~~-~~~~~~kvv~ 323 (625)
..-+. .++-.+... ++++..-+++
T Consensus 104 ~~~~l~~l~~~~~~~~~~~~~~~~~~ 129 (239)
T cd02517 104 PPEMIDQVVAALKDDPGVDMATLATP 129 (239)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 44322 233333333 5666555554
No 62
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=96.56 E-value=0.071 Score=52.90 Aligned_cols=131 Identities=14% Similarity=0.091 Sum_probs=76.3
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
++++|+||||.|+||+ .|.++|+ .|++++++.++.+++. + .+.-++.++ .++.+.+++++
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~l~~l---~Gkpll~~~l~~l~~~----~--------~~~~IvV~~--~~~~i~~~~~~ 60 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKNIRPL---GGKPLIAWTIEAALES----K--------LFDRVVVST--DDEEIAEVARK 60 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccccchh---CCccHHHHHHHHHHhC----C--------CCCEEEEEC--CcHHHHHHHHH
Confidence 5789999999999996 4889998 4999999999998753 1 122233333 34666666654
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccC--CCch-hhHHHhhcChHHHHHHc--CceEEEEEeC
Q 006923 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPH--GHGD-VHALLYSSGLLKEWHDA--GLKWVLFFQD 294 (625)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~--GhGd-i~~aL~~sGlL~~l~~~--G~~yi~v~~v 294 (625)
+ |.. .+.+. . ..+..+ |-++ +..+ ++.+... +.+++.+.+.
T Consensus 61 ~---~~~-----------~~~~~--~------------~~~~~~~~~~~~~i~~~------l~~l~~~~~~~d~vlv~~~ 106 (223)
T cd02513 61 Y---GAE-----------VPFLR--P------------AELATDTASSIDVILHA------LDQLEELGRDFDIVVLLQP 106 (223)
T ss_pred h---CCC-----------ceeeC--C------------hHHCCCCCCcHHHHHHH------HHHHHHhCCCCCEEEEeCC
Confidence 3 210 01110 0 001111 2222 3333 2333332 3689999999
Q ss_pred CCccccccch-HHHHHHhhcCCceeeeeccC
Q 006923 295 TNGLLFKAIP-ASLGVSATKQYHVNSLAVPR 324 (625)
Q Consensus 295 DN~L~~~~DP-~~lG~~~~~~~~~~~kvv~r 324 (625)
|.++...-+- .++..+..++.+..+-+++.
T Consensus 107 D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~ 137 (223)
T cd02513 107 TSPLRSAEDIDEAIELLLSEGADSVFSVTEF 137 (223)
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 9987764332 23444445667777766663
No 63
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=96.55 E-value=0.0045 Score=58.40 Aligned_cols=55 Identities=25% Similarity=0.420 Sum_probs=42.6
Q ss_pred EEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 006923 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (625)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (625)
+|+||||.|+||| +||.++|+ .|+|+++..++.+.... .=+++|.+.. +++.+++
T Consensus 1 ~vILa~G~s~Rmg--~~K~l~~i---~g~~li~~~l~~l~~~~------------~~~Ivvv~~~---~~~~~~~ 55 (160)
T PF12804_consen 1 AVILAAGKSSRMG--GPKALLPI---GGKPLIERVLEALREAG------------VDDIVVVTGE---EEIYEYL 55 (160)
T ss_dssp EEEEESSSCGGGT--SCGGGSEE---TTEEHHHHHHHHHHHHT------------ESEEEEEEST---HHHHHHH
T ss_pred CEEECCcCcccCC--CCccceeE---CCccHHHHHHHHhhccC------------CceEEEecCh---HHHHHHH
Confidence 5899999999998 49999998 59999999999987652 1256777776 3444444
No 64
>PLN02917 CMP-KDO synthetase
Probab=96.43 E-value=0.11 Score=55.11 Aligned_cols=183 Identities=11% Similarity=0.050 Sum_probs=99.3
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
++++|++|+|.++||+ +|.++|+. |++++++.++++.... .+..++.. ..++.+.+++.+
T Consensus 47 ~i~aIIpA~G~SsR~~---~K~L~~i~---GkPLL~~vi~~a~~~~------------~~~~VVV~--~~~e~I~~~~~~ 106 (293)
T PLN02917 47 RVVGIIPARFASSRFE---GKPLVHIL---GKPMIQRTWERAKLAT------------TLDHIVVA--TDDERIAECCRG 106 (293)
T ss_pred cEEEEEecCCCCCCCC---CCCeeeEC---CEEHHHHHHHHHHcCC------------CCCEEEEE--CChHHHHHHHHH
Confidence 7889999999999996 59999984 9999999999986421 23334443 235677777764
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 006923 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (625)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~ 299 (625)
+ |. .++... ...+.|-|.+..++ +.+ ....+++.+.+-|.+|.
T Consensus 107 ~---~v-------------~vi~~~--------------~~~~~GT~~~~~a~------~~l-~~~~d~Vlil~gD~PlI 149 (293)
T PLN02917 107 F---GA-------------DVIMTS--------------ESCRNGTERCNEAL------KKL-EKKYDIVVNIQGDEPLI 149 (293)
T ss_pred c---CC-------------EEEeCC--------------cccCCchHHHHHHH------Hhc-cCCCCEEEEecCCcCCC
Confidence 2 21 111100 01244555565443 222 23457899999999976
Q ss_pred cccchH-HHHHHhhcC-CceeeeeccCCccCc--cceEEEEecCCCcee--E-E-EEeccCccHHHHhcCCCCCCCCCCC
Q 006923 300 FKAIPA-SLGVSATKQ-YHVNSLAVPRKAKEA--IGGITRLTHADGRSM--V-I-NVEYNQLDPLLRATGFPDGDVNCET 371 (625)
Q Consensus 300 ~~~DP~-~lG~~~~~~-~~~~~kvv~r~~~E~--vG~i~~~~~~dG~~~--v-~-nVEYsel~~~l~~~~~~~g~l~~~~ 371 (625)
..-+.. ++-.+..+. +.+.+-+.+-.+.+. -|.+.++++.+|+-. . . .+|+.+-. ++...
T Consensus 150 ~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~--------~~~~~---- 217 (293)
T PLN02917 150 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGK--------VNPQF---- 217 (293)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcc--------ccccc----
Confidence 643221 223222222 233333332233333 355544455567521 0 1 12332211 00111
Q ss_pred CCCCCccceeeEEEehhhhHHHHh
Q 006923 372 GYSPFPGNINQLILELGPYMEELK 395 (625)
Q Consensus 372 gf~~f~gNinn~~~~l~~l~~~l~ 395 (625)
..--|+....|+.++|. .+.
T Consensus 218 ---i~~~n~Giy~f~~~~L~-~l~ 237 (293)
T PLN02917 218 ---PYLLHLGIQSYDAKFLK-IYP 237 (293)
T ss_pred ---ceEEEEEEEEeCHHHHH-HHH
Confidence 12239999999999887 553
No 65
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.0079 Score=65.35 Aligned_cols=141 Identities=16% Similarity=0.206 Sum_probs=88.2
Q ss_pred eEEEEEcCCccccCC---ccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 006923 141 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (625)
Q Consensus 141 vavvlLaGGlGTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l 217 (625)
+-.|+||||.||||- .+.||.++|+. ++++++++++.+.+. .+-=++++-....+.+.++|
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI~---gkPii~~~l~~L~~~-------------Gv~eivi~~~y~~~~i~~~~ 65 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIA---GKPLIEYVLEALAAA-------------GVEEIVLVVGYLGEQIEEYF 65 (358)
T ss_pred ceEEEEeCCccccccccccCCCcccceeC---CccHHHHHHHHHHHC-------------CCcEEEEEeccchHHHHHHH
Confidence 346889999999995 58999999995 999999999988641 34555666788888999999
Q ss_pred HhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCc
Q 006923 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (625)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~ 297 (625)
.....+|++ |.+..|.. |-|.|+-.... ++.+ +.+-.++.+-|+.
T Consensus 66 ~d~~~~~~~---I~y~~e~~------------------------~lGTag~l~~a-----~~~l---~~~~f~v~~GDv~ 110 (358)
T COG1208 66 GDGEGLGVR---ITYVVEKE------------------------PLGTAGALKNA-----LDLL---GGDDFLVLNGDVL 110 (358)
T ss_pred hcccccCCc---eEEEecCC------------------------cCccHHHHHHH-----HHhc---CCCcEEEEECCee
Confidence 987555542 33322211 44444443332 1222 1166778888873
Q ss_pred cccccchHHHHHHhhcCCceeeeeccC-CccCccceEE
Q 006923 298 LLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGIT 334 (625)
Q Consensus 298 L~~~~DP~~lG~~~~~~~~~~~kvv~r-~~~E~vG~i~ 334 (625)
.-.. --.++.++..++....+-.+.- .+ ..-|++.
T Consensus 111 ~~~d-l~~l~~~~~~~~~~~~~~~~~~~~~-~~~Gvv~ 146 (358)
T COG1208 111 TDLD-LSELLEFHKKKGALATIALTRVLDP-SEFGVVE 146 (358)
T ss_pred eccC-HHHHHHHHHhccCccEEEEEecCCC-CcCceEE
Confidence 2222 2346777777744444433332 23 4567544
No 66
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=96.35 E-value=0.11 Score=52.31 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=44.5
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-cEEEecCccchHHHHHHHH
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 218 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~i-Pl~IMTS~~T~~~T~~~l~ 218 (625)
++++|+||+|.++||+ +|.++|+. |++++++.++++.+.. .+ .++|-|. ++.+.++++
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~l~~i~---GkPli~~~i~~l~~~~------------~~~~ivv~t~---~~~i~~~~~ 60 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKPLLDIL---GKPMIQHVYERAAQAA------------GVEEVYVATD---DQRIEDAVE 60 (238)
T ss_pred cEEEEEecCCCCCCCC---CCccCccC---CcCHHHHHHHHHHhcC------------CCCeEEEECC---hHHHHHHHH
Confidence 4788999999999995 59999984 9999999999886520 12 2344442 477888887
Q ss_pred h
Q 006923 219 S 219 (625)
Q Consensus 219 ~ 219 (625)
+
T Consensus 61 ~ 61 (238)
T PRK13368 61 A 61 (238)
T ss_pred H
Confidence 5
No 67
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=96.32 E-value=0.0063 Score=58.80 Aligned_cols=52 Identities=23% Similarity=0.417 Sum_probs=40.3
Q ss_pred EEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchH
Q 006923 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHS 211 (625)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~ 211 (625)
+|+||||.|+||| .||.++|+ .|+++++..++++++. + .-+++|.|+...++
T Consensus 2 ~iIla~G~s~R~g--~~K~ll~~---~g~pll~~~i~~l~~~----~--------~~~iivv~~~~~~~ 53 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKLLLPY---KGKTILEHVVDNALRL----F--------FDEVILVLGHEADE 53 (188)
T ss_pred eEEECCCCcccCC--CCceeccc---CCeeHHHHHHHHHHHc----C--------CCcEEEEeCCcHHH
Confidence 6899999999998 68999998 4999999999888642 1 22566777765433
No 68
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.32 E-value=0.008 Score=58.51 Aligned_cols=61 Identities=28% Similarity=0.381 Sum_probs=47.8
Q ss_pred EEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 006923 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (625)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~ 220 (625)
.+|+||||+|||||. .-|-++++ .|+.++++.++.+.. ... -+++-||.+| ..|++|+++-
T Consensus 2 ~~iiMAGGrGtRmg~-~EKPlleV---~GkpLI~~v~~al~~---~~d----------~i~v~isp~t-p~t~~~~~~~ 62 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKPLLEV---CGKPLIDRVLEALRK---IVD----------EIIVAISPHT-PKTKEYLESV 62 (177)
T ss_pred ceEEecCCcccccCC-CcCcchhh---CCccHHHHHHHHHHh---hcC----------cEEEEeCCCC-HhHHHHHHhc
Confidence 578999999999996 77889987 699999998887765 222 3567777765 5688888863
No 69
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=96.31 E-value=0.088 Score=58.78 Aligned_cols=264 Identities=17% Similarity=0.168 Sum_probs=140.0
Q ss_pred cCCcccCCCcCC---CCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC-----CCCCCCCC
Q 006923 157 NGIKVALPAETT---TGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN-----SYFGMKPT 228 (625)
Q Consensus 157 ~~pK~~lpv~~~---~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~-----~~FGl~~~ 228 (625)
..|||+||...- ....|-+..+|-.+ |.. .+ ..+-+=.--|..-.+.-.+.+++- ..||. .=
T Consensus 165 ~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~-----Ya~--~~--g~~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~v-~f 234 (513)
T PF14134_consen 165 NLPKGLLPFHKYPDGIRTPFEEHLVEAAL-----YAK--SN--GKANLHFTVSPEHLDLFKKEVEEVKPKYEKKYGV-KF 234 (513)
T ss_pred CCCceeeecccCCCCCcCcHHHHHHHHHH-----HHh--cC--CeEEEEEeeCHHHHHHHHHHHHHHHHHHHHhhCc-eE
Confidence 689999998422 23334444444332 221 11 133333444554433333333321 12332 23
Q ss_pred cEEEEEecc---eeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccccccch-
Q 006923 229 QVKLLKQEK---VACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIP- 304 (625)
Q Consensus 229 ~V~~F~Q~~---~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~~~~DP- 304 (625)
+|.|=.|.. -.++ +.+..|.. .+.+++..-|.|||.+..-| -+..-..|||=||||+.....-.
T Consensus 235 ~IsfS~Qk~sTDTIAv-~~dN~pFR--~~dG~LlFRPgGHGALieNL---------N~ldaDiIFIKNIDNVvpd~~k~~ 302 (513)
T PF14134_consen 235 EISFSEQKPSTDTIAV-DPDNTPFR--NEDGSLLFRPGGHGALIENL---------NDLDADIIFIKNIDNVVPDRLKEE 302 (513)
T ss_pred EEEecccCCCCCeeEE-CCCCCccC--CCCCCEEeCCCcchHHHhhh---------ccccCCEEEEeCccccCCcccchh
Confidence 566666632 2354 47788887 66779999999999875544 44557889999999976432211
Q ss_pred ------HHHHHHhh------------------------------cCC------------------------ceeeeecc-
Q 006923 305 ------ASLGVSAT------------------------------KQY------------------------HVNSLAVP- 323 (625)
Q Consensus 305 ------~~lG~~~~------------------------------~~~------------------------~~~~kvv~- 323 (625)
++.|..++ +.+ +==+-||-
T Consensus 303 t~~yKk~LaG~L~~lQ~~~F~yl~~L~~~~~~~~~l~ei~~Fl~~~L~~~~~~~~~~~~~~~~~~yL~~kLnRPiRVCGM 382 (513)
T PF14134_consen 303 TVKYKKILAGKLLELQEKIFKYLKLLDKGKYSEEELEEIKDFLEEELNIKLPDDFKKLSDEEKIEYLKEKLNRPIRVCGM 382 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCcHHHHhhCHHHHHHHHHHHcCCCceeeec
Confidence 01111110 000 00123443
Q ss_pred -CCccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCCCCCCCCccceeeEEEehhhhHHHHhhccCccc
Q 006923 324 -RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIK 402 (625)
Q Consensus 324 -r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNinn~~~~l~~l~~~l~~~~~~lp 402 (625)
|+-+|+-||--.+.++||...+..||=+||+..-..+. .-+...|.| |=-.+++.++.|+- ..-.|+
T Consensus 383 VkNeGEPGGGPFwv~~~dG~~SLQIvEssQId~~~~~q~---~if~~~THF-----NPVDLVCgvkdykG----~kFdL~ 450 (513)
T PF14134_consen 383 VKNEGEPGGGPFWVKNEDGTVSLQIVESSQIDMSNPEQK---EIFKNSTHF-----NPVDLVCGVKDYKG----EKFDLP 450 (513)
T ss_pred cccCCCCCCCCeEEECCCCCEeeeeehhhhcCCCCHHHH---HHHHcCCCC-----CccceEeeccCCCC----CcCCch
Confidence 78899999987888899986555599988854332221 012223323 44566666654421 122466
Q ss_pred cccCCcc--cCCCCCcccCchh-HhHh-hc--cccccCCCCCceeEEEeeccceeecccCCCccc
Q 006923 403 EFVNPKY--KDASKTSFKSSTR-LECM-MQ--DYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDA 461 (625)
Q Consensus 403 ~~vnpK~--~d~~~~~~~~~~r-LE~~-m~--D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~ 461 (625)
.||+|+. +. .|+.--+++| ||.= .+ .+.. =+..|++||= ..|.|||+..|+.
T Consensus 451 ~fvD~~tgFIs-~KSk~Gk~LKAlELPGLWNGaMa~-----WnTvFVEVPl-~TFNPVKTVnDLL 508 (513)
T PF14134_consen 451 DFVDPNTGFIS-EKSKNGKELKALELPGLWNGAMAD-----WNTVFVEVPL-ITFNPVKTVNDLL 508 (513)
T ss_pred hccCCCCceee-ecCCCCccchhhccCCcccchhcC-----CceEEEEecc-ccCCCccchhhhc
Confidence 7777651 11 0000002233 4432 11 1111 1346789996 9999999988874
No 70
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.23 E-value=0.004 Score=61.72 Aligned_cols=39 Identities=31% Similarity=0.474 Sum_probs=34.8
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCC-cchHHHHHHHHHH
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTG-TCFLQNYIECILA 183 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~-~s~lql~~~~i~~ 183 (625)
+++.|+||||+++||| .+|.++|+ .| +|+++..++++..
T Consensus 8 ~i~~vILAgG~s~RmG--~~K~ll~~---~g~~~ll~~~i~~l~~ 47 (196)
T PRK00560 8 NIPCVILAGGKSSRMG--ENKALLPF---GSYSSLLEYQYTRLLK 47 (196)
T ss_pred CceEEEECCcccccCC--CCceEEEe---CCCCcHHHHHHHHHHH
Confidence 7899999999999998 68999998 47 9999999998864
No 71
>PRK10122 GalU regulator GalF; Provisional
Probab=96.15 E-value=0.012 Score=62.35 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=50.3
Q ss_pred cceEEEEEcCCccccCC---ccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 006923 139 KNAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (625)
Q Consensus 139 ~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~ 215 (625)
.++.+|++|||.||||. ...||.++|+. |++++++.++.+... + .-.++|+|. ...+.+.+
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~llpi~---gkpiI~~~l~~l~~~----G--------i~~i~iv~~-~~~~~i~~ 65 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPIV---DKPMIQYIVDEIVAA----G--------IKEIVLVTH-ASKNAVEN 65 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCceeeEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEcC-CChHHHHH
Confidence 35778999999999997 57899999995 899999999988652 2 123556655 57788888
Q ss_pred HHH
Q 006923 216 LLE 218 (625)
Q Consensus 216 ~l~ 218 (625)
+|.
T Consensus 66 ~~~ 68 (297)
T PRK10122 66 HFD 68 (297)
T ss_pred HHh
Confidence 886
No 72
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=96.11 E-value=0.013 Score=60.89 Aligned_cols=120 Identities=21% Similarity=0.245 Sum_probs=82.0
Q ss_pred EEEEcCCccccCC---ccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
-|+||||.||||- +..||.++|+. +|..+++-++++... | ---+.|.++..+-...++++..
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV~---~KPmi~y~l~~L~~a----G--------I~dI~II~~~~~~~~~~~llGd 67 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPVY---DKPMIYYPLETLMLA----G--------IRDILIVVGPEDKPTFKELLGD 67 (286)
T ss_pred cEEecCcCccccccccccCCcccceec---CcchhHhHHHHHHHc----C--------CceEEEEecCCchhhhhhhhcC
Confidence 3789999999984 68999999995 899999999998643 2 2236777888888888888888
Q ss_pred CCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCCccc
Q 006923 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (625)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN~L~ 299 (625)
-..||.+ +++-.| -.|.|=++.+. +-+++. |-+-..++--||++-
T Consensus 68 gs~~gv~---itY~~Q------------------------~~p~GlA~Av~------~a~~fv--~~~~f~l~LGDNi~~ 112 (286)
T COG1209 68 GSDFGVD---ITYAVQ------------------------PEPDGLAHAVL------IAEDFV--GDDDFVLYLGDNIFQ 112 (286)
T ss_pred ccccCcc---eEEEec------------------------CCCCcHHHHHH------HHHhhc--CCCceEEEecCceec
Confidence 7888874 444333 24555555443 233332 434556777799877
Q ss_pred cccchHHHHHHhhc
Q 006923 300 FKAIPASLGVSATK 313 (625)
Q Consensus 300 ~~~DP~~lG~~~~~ 313 (625)
. --..++-.+.+.
T Consensus 113 ~-~l~~~~~~~~~~ 125 (286)
T COG1209 113 D-GLSELLEHFAEE 125 (286)
T ss_pred c-ChHHHHHHHhcc
Confidence 7 344455555553
No 73
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=96.11 E-value=0.024 Score=56.46 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=34.2
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
....|+||||++.|| .+|.++++ .|++++|+.++++..
T Consensus 4 ~~~~vILAGG~srRm---~dK~l~~~---~g~~lie~v~~~L~~ 41 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKALLPL---NGRPLIEHVIDRLRP 41 (192)
T ss_pred CceEEEecCCccccc---ccccccee---CCeEHHHHHHHHhcc
Confidence 567899999999999 99999998 499999999999854
No 74
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=95.93 E-value=0.0063 Score=58.94 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=33.2
Q ss_pred eEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHH
Q 006923 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (625)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~ 182 (625)
+++|+||||.|||||- .||.++|+ .|+++++..++.+.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i---~g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVEL---GGKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEE---CCEEHHHHHHHHHH
Confidence 4689999999999982 49999998 49999999999885
No 75
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=95.90 E-value=0.0061 Score=58.77 Aligned_cols=37 Identities=30% Similarity=0.397 Sum_probs=32.9
Q ss_pred EEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
+.|+||||.|+|||. ||.++|+ .|+++++..++++..
T Consensus 2 ~~iILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~~ 38 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKALLEL---GGKPLLEHVLERLKP 38 (181)
T ss_pred cEEEECCCccccCCC--CceeeEE---CCEEHHHHHHHHHHh
Confidence 579999999999984 9999998 489999999998764
No 76
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=95.78 E-value=0.0064 Score=60.54 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=34.6
Q ss_pred EEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
+.|+||||.|+|||.+.||.++++ .|++++++.++++..
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l~~l---~gkpll~~~l~~l~~ 39 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQYLEL---GGRPLLEHTLDAFLA 39 (217)
T ss_pred CEEEEcCcccccCCCCCCccEeEE---CCeEHHHHHHHHHhc
Confidence 368999999999998789999998 499999999998864
No 77
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=95.74 E-value=0.0083 Score=59.60 Aligned_cols=39 Identities=33% Similarity=0.428 Sum_probs=34.5
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
+++.|+||||.|+|||. +|.++|+ .|+|+++..++.+..
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~~ 45 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKALLPW---QGVPLLQRVARIAAA 45 (200)
T ss_pred CceEEEEcCCCcccCCC--CceeeEE---CCEeHHHHHHHHHHh
Confidence 67889999999999984 7999998 499999999998853
No 78
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=95.74 E-value=0.01 Score=60.61 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=52.8
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (625)
++.+|++|+|.|||||.+.||-.++++ |+++|+..++.++.... --.++|.++..-+....++.+
T Consensus 4 ~~~~vilAaG~G~R~~~~~pKq~l~l~---g~pll~~tl~~f~~~~~-----------i~~Ivvv~~~~~~~~~~~~~~ 68 (230)
T COG1211 4 MVSAVILAAGFGSRMGNPVPKQYLELG---GRPLLEHTLEAFLESPA-----------IDEIVVVVSPEDDPYFEKLPK 68 (230)
T ss_pred eEEEEEEcCccccccCCCCCceEEEEC---CEEehHHHHHHHHhCcC-----------CCeEEEEEChhhhHHHHHhhh
Confidence 578999999999999999999999984 99999999998876422 124677777777777777765
No 79
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=95.72 E-value=0.0078 Score=59.76 Aligned_cols=40 Identities=33% Similarity=0.440 Sum_probs=35.4
Q ss_pred eEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
+++|+||||.|+|||...||.++|+ .|++++++.++++..
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i---~Gkpll~~~i~~l~~ 40 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLEL---GGKPVLEHTLEAFLA 40 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEE---CCeEHHHHHHHHHhc
Confidence 4679999999999987789999998 499999999998864
No 80
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=95.69 E-value=0.01 Score=57.92 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=32.0
Q ss_pred EEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
+.|+||||.|+|||. +|.++++ .|+++++..++.+++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~~~~ 38 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKLALPL---GETTLGSASLKTALS 38 (190)
T ss_pred eEEEEcCCccccCCC--Cceecee---CCccHHHHHHHHHHh
Confidence 578999999999984 7999998 499999999987654
No 81
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=95.67 E-value=0.0089 Score=60.10 Aligned_cols=41 Identities=32% Similarity=0.447 Sum_probs=36.9
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
++++|+||||.|+|||...||.++|+ .|++++++.++++..
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l~~~---~g~pli~~~l~~l~~ 43 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQYLPL---GGKPILEHTLEAFLA 43 (227)
T ss_pred ceEEEEEcCccccccCCCCCceeeEE---CCEEHHHHHHHHHHc
Confidence 57889999999999998899999998 499999999998864
No 82
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=95.65 E-value=0.0096 Score=58.32 Aligned_cols=39 Identities=28% Similarity=0.321 Sum_probs=34.5
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHH
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~ 182 (625)
++.+|+||||.|+||| ..||.++|+ .|+++++..++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~-~~~K~ll~~---~g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMG-GVDKGLQEL---NGKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCC-CCCCceeEE---CCEEHHHHHHHHHh
Confidence 5789999999999996 369999998 49999999999875
No 83
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=95.40 E-value=0.023 Score=58.15 Aligned_cols=62 Identities=21% Similarity=0.198 Sum_probs=47.5
Q ss_pred EEEEEcCCccccCCc---cCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006923 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (625)
Q Consensus 142 avvlLaGGlGTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (625)
-+|+||||.||||+- ..||.++|+. |++++++.++.+... + --.++|+|+.. .+.+.++|.
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi~---g~pli~~~l~~l~~~----g--------i~~v~iv~~~~-~~~i~~~~~ 65 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPIV---DKPLIQYVVEEAVEA----G--------IEDILIVTGRG-KRAIEDHFD 65 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEEC---CEEHHHHHHHHHHhC----C--------CCEEEEEeCCc-HHHHHHHhc
Confidence 368999999999964 7899999985 899999998887642 2 12456777755 667888886
Q ss_pred h
Q 006923 219 S 219 (625)
Q Consensus 219 ~ 219 (625)
+
T Consensus 66 ~ 66 (260)
T TIGR01099 66 T 66 (260)
T ss_pred c
Confidence 3
No 84
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=95.26 E-value=0.016 Score=63.17 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=35.6
Q ss_pred cceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHH
Q 006923 139 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (625)
Q Consensus 139 ~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~ 182 (625)
.++++|+||||+|+||| ..||.++|+ .|+++++..++.+.
T Consensus 4 ~~i~~VILAgG~s~Rmg-g~~K~ll~i---~Gkpll~~~i~~l~ 43 (366)
T PRK14489 4 SQIAGVILAGGLSRRMN-GRDKALILL---GGKPLIERVVDRLR 43 (366)
T ss_pred CCceEEEEcCCcccCCC-CCCCceeEE---CCeeHHHHHHHHHH
Confidence 47889999999999996 479999998 49999999999885
No 85
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.24 E-value=0.014 Score=63.53 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=34.4
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
+++.|+||||+|+||| .+|.++|+ .|+++++..++.+..
T Consensus 174 ~i~~iILAGG~SsRmG--~~K~ll~~---~Gk~ll~~~l~~l~~ 212 (369)
T PRK14490 174 PLSGLVLAGGRSSRMG--SDKALLSY---HESNQLVHTAALLRP 212 (369)
T ss_pred CceEEEEcCCccccCC--CCcEEEEE---CCccHHHHHHHHHHh
Confidence 5689999999999998 59999998 499999999888853
No 86
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=95.22 E-value=0.029 Score=57.75 Aligned_cols=61 Identities=23% Similarity=0.195 Sum_probs=46.5
Q ss_pred EEEEcCCccccCCc---cCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
+|+||||.||||.- ..||.++|+. |++++++.++.+.+. + --.++|.|.. ..+.+.++|..
T Consensus 3 aiIlAaG~gtRl~plt~~~pK~llpv~---gkpli~~~l~~l~~~----g--------i~~i~iv~~~-~~~~i~~~~~~ 66 (267)
T cd02541 3 AVIPAAGLGTRFLPATKAIPKEMLPIV---DKPVIQYIVEEAVAA----G--------IEDIIIVTGR-GKRAIEDHFDR 66 (267)
T ss_pred EEEEcCCCCccCCCcccCCCceeeEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEeCC-chHHHHHHhCC
Confidence 68999999999973 7899999995 899999999988642 2 1135566664 56778888854
No 87
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=95.10 E-value=0.28 Score=53.62 Aligned_cols=200 Identities=16% Similarity=0.204 Sum_probs=121.8
Q ss_pred cceEEEEEcCCccccCC---ccCCcccCCCcCCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHH
Q 006923 139 KNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQ 214 (625)
Q Consensus 139 ~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~~~-s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~ 214 (625)
+++-.++||||+|+||+ ...+|..+|++ || -+.|+.+-. ..+ +| ---+.+.|-...| ...
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFg---GkYRiIDF~LSN------~vN---SG---i~~I~VltQy~~~-SL~ 67 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFG---GKYRIIDFALSN------CVN---SG---IRRIGVLTQYKSH-SLN 67 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCccccccccC---ceeEEEeEEccc------ccc---cC---CCeEEEEeccchh-HHH
Confidence 46778899999999997 36788888874 33 223322211 111 11 3457888988888 677
Q ss_pred HHHHhCCCCCCCC--CcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEE
Q 006923 215 ELLESNSYFGMKP--TQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFF 292 (625)
Q Consensus 215 ~~l~~~~~FGl~~--~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~ 292 (625)
+++..-..|++++ +.|+++ |.-...+ .-.|+-.+-=.+|.. +..+.+-+-+|+.+.
T Consensus 68 ~Hi~~G~~w~l~~~~~~v~il-----p~~~~~~-----------~~~wy~Gtadai~Qn------l~~i~~~~~eyvlIl 125 (393)
T COG0448 68 DHIGRGWPWDLDRKNGGVFIL-----PAQQREG-----------GERWYEGTADAIYQN------LLIIRRSDPEYVLIL 125 (393)
T ss_pred HHhhCCCccccccccCcEEEe-----CchhccC-----------CCcceeccHHHHHHh------HHHHHhcCCCEEEEe
Confidence 7777766676653 233332 2211011 112333222234433 334556799999999
Q ss_pred eCCCccccccchHHHHHHhhcCCceeeeecc--CCccCccceEEEEecCCCceeEEEEeccCccHHHHhcCCCCCCCCCC
Q 006923 293 QDTNGLLFKAIPASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (625)
Q Consensus 293 ~vDN~L~~~~DP~~lG~~~~~~~~~~~kvv~--r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~ 370 (625)
+-|= +.+.==-.+|-+|.+.++++..-|.+ +..+..-|++ .+ .++|+ + +|+.|-|.. +...
T Consensus 126 sgDh-IYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim-~~-D~~~~--i--~~F~eKp~~--------~~~~-- 188 (393)
T COG0448 126 SGDH-IYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVM-NV-DENGR--I--IEFVEKPAD--------GPPS-- 188 (393)
T ss_pred cCCE-EEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCce-EE-CCCCC--E--EeeeeccCc--------CCcc--
Confidence 9886 44443346799999999999887775 5555566733 33 45565 3 677666543 1111
Q ss_pred CCCCCCccceeeEEEehhhhHHHHhhc
Q 006923 371 TGYSPFPGNINQLILELGPYMEELKKT 397 (625)
Q Consensus 371 ~gf~~f~gNinn~~~~l~~l~~~l~~~ 397 (625)
.+ .+...+..|+-+.|.+.|.+.
T Consensus 189 --~~--laSMgiYIf~~~~L~~~L~~~ 211 (393)
T COG0448 189 --NS--LASMGIYIFNTDLLKELLEED 211 (393)
T ss_pred --cc--eeeeeeEEEcHHHHHHHHHHH
Confidence 11 346889999999999999763
No 88
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=95.07 E-value=0.031 Score=62.36 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=47.5
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (625)
++.+|+||||.||||+...||.++|+. |+++++..++++.+. + .-.+++.++. ..+.+.+++.
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l~~i~---gkpli~~~i~~l~~~----g--------i~~i~vv~~~-~~~~i~~~~~ 67 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVLHTLA---GKPMVQHVIDAANEL----G--------AQHVHLVYGH-GGDLLKQTLA 67 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhcceeC---ChhHHHHHHHHHHhc----C--------CCcEEEEECC-CHHHHHHhhc
Confidence 578899999999999988899999984 899999999887432 1 2245666664 3455666654
No 89
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=95.01 E-value=0.022 Score=61.75 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=34.3
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
.+..|+||||+|+||| .+|.++|+ .|+++++..++.+..
T Consensus 160 ~i~~IILAGGkSsRMG--~dKaLL~~---~GkpLl~~~ie~l~~ 198 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG--KDKALLNY---QGQPHAQYLYDLLAK 198 (346)
T ss_pred CceEEEEeccccccCC--CCccccee---CCccHHHHHHHHHHh
Confidence 6788999999999998 69999998 499999998877754
No 90
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=94.95 E-value=0.018 Score=63.13 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=37.3
Q ss_pred cceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 139 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 139 ~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
.++++|+||||.|+|||...||..+|+ .|++++++.++.+.+
T Consensus 4 m~v~aIILAAG~GsRmg~~~pKqll~l---~GkPll~~tl~~l~~ 45 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSAEVKKQWLRI---GGKPLWLHVLENLSS 45 (378)
T ss_pred CcceEEEECCCCCccCCCCCCeeEEEE---CCeeHHHHHHHHHhc
Confidence 367899999999999998899999998 499999999888764
No 91
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.83 E-value=0.038 Score=58.69 Aligned_cols=198 Identities=22% Similarity=0.255 Sum_probs=106.1
Q ss_pred eEEEEEcCCccccC----CccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 006923 141 AAFVLVAGGLGERL----GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (625)
Q Consensus 141 vavvlLaGGlGTRL----G~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (625)
+.-|+||||.|||| --..||..|.. ..++|+||..++|+..+.. .-.+++.|+..-...+++=
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L--~~~~Sllq~T~~R~~~l~~-----------~~~~~vVtne~~~f~v~eq 68 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKL--FGDLSLLQQTVKRLAFLGD-----------IEEPLVVTNEKYRFIVKEQ 68 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceee--CCCCcHHHHHHHHHhhcCC-----------ccCeEEEeCHHHHHHHHHH
Confidence 45689999999999 34789998887 5699999999999977632 2356677776666666665
Q ss_pred HHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCC
Q 006923 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (625)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN 296 (625)
|.+-+. ....+ ++++|..++ ++|- |..+ .+.-....|=--+.|..-|-
T Consensus 69 l~e~~~-------------------~~~~~-illEP~gRn---TApA----IA~a-----a~~~~~~~~d~~~lVlpsDH 116 (333)
T COG0836 69 LPEIDI-------------------ENAAG-IILEPEGRN---TAPA----IALA-----ALSATAEGGDALVLVLPSDH 116 (333)
T ss_pred Hhhhhh-------------------ccccc-eEeccCCCC---cHHH----HHHH-----HHHHHHhCCCcEEEEecCcc
Confidence 554211 01112 444433332 2221 1111 12222333433455555554
Q ss_pred ccccccch-HHHHH------HhhcCCceeeeeccCCccCccceEEEEec-CC-CceeEEEEeccCccHHHHhcCCCCCCC
Q 006923 297 GLLFKAIP-ASLGV------SATKQYHVNSLAVPRKAKEAIGGITRLTH-AD-GRSMVINVEYNQLDPLLRATGFPDGDV 367 (625)
Q Consensus 297 ~L~~~~DP-~~lG~------~~~~~~~~~~kvv~r~~~E~vG~i~~~~~-~d-G~~~v~nVEYsel~~~l~~~~~~~g~l 367 (625)
+. .|. .|.-. .++++.=+.+=.+|..|.---|=|-.-.. .+ |-+.| -++-|.|.+..++. .
T Consensus 117 -~I--~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~G~~~~~~~~~~V--~~FvEKPd~etA~~-----y 186 (333)
T COG0836 117 -VI--ADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIETGESIAENGVYKV--DRFVEKPDLETAKK-----Y 186 (333)
T ss_pred -ee--ccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeecCcccccCCceEe--eeeeeCCCHHHHHH-----H
Confidence 21 222 22111 12234444444555555554554432100 01 23333 45566666543321 1
Q ss_pred CCCCC-CCCCccceeeEEEehhhhHHHHhhc
Q 006923 368 NCETG-YSPFPGNINQLILELGPYMEELKKT 397 (625)
Q Consensus 368 ~~~~g-f~~f~gNinn~~~~l~~l~~~l~~~ 397 (625)
. ..| | +| |...+.|+.+.+.+.+++.
T Consensus 187 v-~sG~y-~W--NSGmF~Fra~~~l~e~~~~ 213 (333)
T COG0836 187 V-ESGEY-LW--NSGMFLFRASVFLEELKKH 213 (333)
T ss_pred H-HcCce-Ee--eccceEEEHHHHHHHHHhh
Confidence 1 123 4 56 9999999999988888764
No 92
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=5 Score=42.61 Aligned_cols=161 Identities=13% Similarity=0.140 Sum_probs=104.3
Q ss_pred EEEEEcCC--ccccC---CccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 006923 142 AFVLVAGG--LGERL---GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (625)
Q Consensus 142 avvlLaGG--lGTRL---G~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (625)
..|+|.|| -|||. .++.||-++|+. |....+..+....++..+. =+++-.+...+.-..|
T Consensus 4 ~AVIlVGGP~kGTRFRPLSf~vPKPLfpia---G~pmI~Hhi~ac~qi~~l~------------eI~LvGFy~e~~f~~f 68 (407)
T KOG1460|consen 4 KAVILVGGPQKGTRFRPLSFNVPKPLFPIA---GVPMIHHHISACKQISGLA------------EILLVGFYEERVFTDF 68 (407)
T ss_pred EEEEEecCCCCCccccccccCCCCCccccC---CcchhhhhHHHHhcccchh------------heeEEecccchHHHHH
Confidence 34444566 48995 689999999995 8999998888776664443 2355566667777777
Q ss_pred HHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeCCC
Q 006923 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (625)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~vDN 296 (625)
+.+-. ..++... + +--..+|.|.||-...+. |..++---..+|+.|.|=
T Consensus 69 is~~~--------------~e~~~pv----r--------YL~E~~plGtaGgLyhFr-----dqIl~g~ps~vFvlnaDV 117 (407)
T KOG1460|consen 69 ISAIQ--------------QEFKVPV----R--------YLREDNPLGTAGGLYHFR-----DQILAGSPSAVFVLNADV 117 (407)
T ss_pred HHHHH--------------hhcccch----h--------hhccCCCCCcccceeehh-----hHHhcCCCceEEEEecce
Confidence 77632 1111111 1 222357888876544443 345556678999999885
Q ss_pred ccccccchHHHHHHhhcCCceeeeeccCC--ccCccceEEEEecC-CCceeEEEEeccCccH
Q 006923 297 GLLFKAIPASLGVSATKQYHVNSLAVPRK--AKEAIGGITRLTHA-DGRSMVINVEYNQLDP 355 (625)
Q Consensus 297 ~L~~~~DP~~lG~~~~~~~~~~~kvv~r~--~~E~vG~i~~~~~~-dG~~~v~nVEYsel~~ 355 (625)
-+....+.++..+...+..+.+.++.-+ .+-.-|-++ +.+ .|+ + +-|.|.+.
T Consensus 118 -CcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV--~dP~t~e--v--lHYveKPs 172 (407)
T KOG1460|consen 118 -CCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLV--EDPSTGE--V--LHYVEKPS 172 (407)
T ss_pred -ecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeee--ecCCcCc--e--EEeecCcc
Confidence 5556668889999999999998888744 444456544 332 243 2 66777654
No 93
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=94.47 E-value=0.023 Score=56.93 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=32.7
Q ss_pred EEEEcCCccccCC---ccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
+|+||||.||||+ .+.||.++|+. |+++++..++.+..
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~---g~pli~~~l~~l~~ 41 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVD---GKPMIEWVIESLAK 41 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEEC---CEEHHHHHHHhhhc
Confidence 5899999999995 47899999984 89999999888764
No 94
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=94.16 E-value=0.09 Score=59.39 Aligned_cols=197 Identities=21% Similarity=0.188 Sum_probs=106.1
Q ss_pred eEEEEEcCCccccCC----ccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 006923 141 AAFVLVAGGLGERLG----YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (625)
Q Consensus 141 vavvlLaGGlGTRLG----~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (625)
+-.|+||||.||||- ...||.++|+ ..++|+||..++++..+ + ..-++ |.|+..-.+.+++-
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l--~~~~sllq~t~~r~~~~----~-------~~~~i-ivt~~~~~~~v~~q 71 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCL--KGDLTMLQTTICRLNGV----E-------CESPV-VICNEQHRFIVAEQ 71 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeEC--CCCCCHHHHHHHHHHhC----C-------CCCcE-EEeCHHHHHHHHHH
Confidence 567999999999994 2369999998 45689999999987653 1 12244 55887666666666
Q ss_pred HHhCCCCCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHHc--C-ceEEEEEe
Q 006923 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDA--G-LKWVLFFQ 293 (625)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~--G-~~yi~v~~ 293 (625)
+.+.+. ...+++++|..+ -++|.- .+.+++ +.++ + -.-+.|..
T Consensus 72 l~~~~~---------------------~~~~ii~EP~~r---nTApai---alaa~~-------~~~~~~~~~~~v~vlP 117 (478)
T PRK15460 72 LRQLNK---------------------LTENIILEPAGR---NTAPAI---ALAALA-------AKRHSPESDPLMLVLA 117 (478)
T ss_pred HHhcCC---------------------ccccEEecCCCC---ChHHHH---HHHHHH-------HHHhcCCCCCeEEEec
Confidence 654321 012455533222 223321 122221 1122 2 24566777
Q ss_pred CCCccccccc----hHHHHHH-hhcCCceeeeeccCCccCccceEEEEecCC-----CceeEEEEeccCccHHHHhc-CC
Q 006923 294 DTNGLLFKAI----PASLGVS-ATKQYHVNSLAVPRKAKEAIGGITRLTHAD-----GRSMVINVEYNQLDPLLRAT-GF 362 (625)
Q Consensus 294 vDN~L~~~~D----P~~lG~~-~~~~~~~~~kvv~r~~~E~vG~i~~~~~~d-----G~~~v~nVEYsel~~~l~~~-~~ 362 (625)
.|. +....+ -.--+.. ++.+.=+.+=+.|..|.---|=|-.-...+ +-+.| ..+-|.|+...++ -.
T Consensus 118 aDH-~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V--~~F~EKPd~~tA~~yl 194 (478)
T PRK15460 118 ADH-VIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEV--AQFVEKPNLETAQAYV 194 (478)
T ss_pred ccc-ccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeEEeCCccccccccCceEe--eEEEeCCCHHHHHHHH
Confidence 776 322211 1111221 223444444445566776666654211101 11223 4455665553322 11
Q ss_pred CCCCCCCCCCCCCCccceeeEEEehhhhHHHHhhc
Q 006923 363 PDGDVNCETGYSPFPGNINQLILELGPYMEELKKT 397 (625)
Q Consensus 363 ~~g~l~~~~gf~~f~gNinn~~~~l~~l~~~l~~~ 397 (625)
.+|+ | +| |...+.|+.+.+.+.+++.
T Consensus 195 ~~G~------y-~W--NsGiF~~~a~~~l~~~~~~ 220 (478)
T PRK15460 195 ASGE------Y-YW--NSGMFLFRAGRYLEELKKY 220 (478)
T ss_pred HcCC------E-EE--ecceeheeHHHHHHHHHHH
Confidence 1121 3 56 9999999999998888764
No 95
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=94.07 E-value=0.069 Score=56.73 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=47.1
Q ss_pred EEEEEcCCccccCCc---cCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006923 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (625)
Q Consensus 142 avvlLaGGlGTRLG~---~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~ 218 (625)
-+|++|||.||||.- ..||.++|+. |++++++.++.+... + .--++|.+. ...+.+.++|.
T Consensus 10 ~aiIlaaG~g~Rl~~~t~~~pK~l~pv~---g~pii~~~l~~l~~~----g--------i~~i~vv~~-~~~~~i~~~~~ 73 (302)
T PRK13389 10 KAVIPVAGLGTRMLPATKAIPKEMLPLV---DKPLIQYVVNECIAA----G--------ITEIVLVTH-SSKNSIENHFD 73 (302)
T ss_pred EEEEECCcCCccCCCccCCCCceeeEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEeC-CCHHHHHHHHc
Confidence 468889999999964 6999999984 899999999988653 1 112445555 45788999996
Q ss_pred h
Q 006923 219 S 219 (625)
Q Consensus 219 ~ 219 (625)
.
T Consensus 74 ~ 74 (302)
T PRK13389 74 T 74 (302)
T ss_pred c
Confidence 4
No 96
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=93.91 E-value=0.12 Score=51.73 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=45.1
Q ss_pred EEEEcCCccccCC---ccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006923 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (625)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~ 219 (625)
+|+||||.|+||+ ...||.++|+. |++++++.++.+.+. + .--.+|+++..- +...+++.+
T Consensus 3 avIlagg~g~rl~plt~~~pK~llpv~---g~pli~~~l~~l~~~----g--------i~~i~vv~~~~~-~~~~~~~~~ 66 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKALLPVA---NVPLIDYTLEWLEKA----G--------VEEVFVVCCEHS-QAIIEHLLK 66 (216)
T ss_pred EEEEeCCCccccCccccCCCcccceEC---CEEHHHHHHHHHHHC----C--------CCeEEEEeCCcH-HHHHHHHHh
Confidence 4679999999996 47899999985 899999988877641 1 113667777554 455666665
Q ss_pred C
Q 006923 220 N 220 (625)
Q Consensus 220 ~ 220 (625)
.
T Consensus 67 ~ 67 (216)
T cd02507 67 S 67 (216)
T ss_pred c
Confidence 4
No 97
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=93.70 E-value=0.19 Score=51.34 Aligned_cols=35 Identities=17% Similarity=0.009 Sum_probs=30.9
Q ss_pred EEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
+|++|+|.||||+ +|.++++ .|++++++.++++++
T Consensus 2 ~iIpA~g~s~R~~---~K~L~~l---~GkPli~~~le~~~~ 36 (238)
T TIGR00466 2 VIIPARLASSRLP---GKPLEDI---FGKPMIVHVAENANE 36 (238)
T ss_pred EEEecCCCCCCCC---CCeeccc---CCcCHHHHHHHHHHh
Confidence 5889999999994 7999998 499999999998754
No 98
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=91.37 E-value=0.47 Score=47.82 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=41.9
Q ss_pred EEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccc-hHHHHHHHHh
Q 006923 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDT-HSRTQELLES 219 (625)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T-~~~T~~~l~~ 219 (625)
+|+||||.++||| +|.++|+ .|++++++.++.+.... ..-.++|-|+..- ++...+++..
T Consensus 2 aiIlA~G~S~R~~---~K~ll~l---~Gkpli~~~i~~l~~~~-----------~~~~ivVv~~~~~~~~~i~~~~~~ 62 (233)
T cd02518 2 AIIQARMGSTRLP---GKVLKPL---GGKPLLEHLLDRLKRSK-----------LIDEIVIATSTNEEDDPLEALAKK 62 (233)
T ss_pred EEEeeCCCCCCCC---CCccccc---CCccHHHHHHHHHHhCC-----------CCCeEEEECCCCcccHHHHHHHHH
Confidence 4789999999996 5999998 49999999998886421 0113555565443 2566666653
No 99
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=88.02 E-value=0.39 Score=47.70 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=32.7
Q ss_pred EEEEcCCccccC---CccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 143 FVLVAGGLGERL---GYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 143 vvlLaGGlGTRL---G~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
.|+||.|+|||+ -++-||+++.| .|+.+++.++++++.
T Consensus 3 AIIlAAG~gsR~~plT~~tpK~LlkV---~g~plIErqI~~L~e 43 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTPKSLLKV---NGEPLIERQIEQLRE 43 (231)
T ss_pred eEEEecccccccccccccCChHHHHh---cCcccHHHHHHHHHH
Confidence 588999999997 46899999998 599999998888864
No 100
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=85.48 E-value=1 Score=45.11 Aligned_cols=39 Identities=28% Similarity=0.415 Sum_probs=35.5
Q ss_pred ceEEEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
+++.|+||-|.|+||| .+|.++|+ .|++++...+++.+.
T Consensus 5 ~v~~VvLAAGrssRmG--~~KlLap~---~g~plv~~~~~~a~~ 43 (199)
T COG2068 5 TVAAVVLAAGRSSRMG--QPKLLAPL---DGKPLVRASAETALS 43 (199)
T ss_pred ceEEEEEcccccccCC--Ccceeccc---CCCcHHHHHHHHHHh
Confidence 7899999999999999 89999998 599999999998764
No 101
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=84.71 E-value=1.3 Score=46.42 Aligned_cols=38 Identities=32% Similarity=0.329 Sum_probs=31.3
Q ss_pred EEEEcCCccccC---CccCCcccCCCcCCCCcchHHHHHHHHHH
Q 006923 143 FVLVAGGLGERL---GYNGIKVALPAETTTGTCFLQNYIECILA 183 (625)
Q Consensus 143 vvlLaGGlGTRL---G~~~pK~~lpv~~~~~~s~lql~~~~i~~ 183 (625)
.|+.|.|+|||+ --.-||-|||+- +|...|+.++...+
T Consensus 7 AViPaAGlGTRfLPATKaiPKEMLPIv---dKP~IqYiVeEa~~ 47 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKEMLPIV---DKPLIQYIVEEAVA 47 (291)
T ss_pred EEEEccCcccccccccccCchhhcccc---CchhHHHHHHHHHH
Confidence 577889999998 236789999993 79999999987654
No 102
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=75.43 E-value=48 Score=33.51 Aligned_cols=131 Identities=17% Similarity=0.139 Sum_probs=75.6
Q ss_pred EEEEcCCccccCCccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCC
Q 006923 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSY 222 (625)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~l~~~~~ 222 (625)
+|++|.|.++||+ .|-..|+ .|++++++.+++.++.. .+--++..++ ++++.++.+++
T Consensus 2 aiIpArG~Skr~~---~Knl~~l---~GkpLi~~ti~~a~~s~------------~~d~IvVstd--~~~i~~~a~~~-- 59 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKNIKPF---CGKPMIAYSIEAALNSG------------LFDKVVVSTD--DEEIAEVAKSY-- 59 (222)
T ss_pred EEEccCCCCCCCC---Cccchhc---CCcCHHHHHHHHHHhCC------------CCCEEEEeCC--CHHHHHHHHHc--
Confidence 4778889999995 5888887 49999999999876521 1222333444 35677777753
Q ss_pred CCCCCCcEEEEEecceeEEecCCCceecCCCCCCccccccCCCchhhHHHhhcChHHHHHH-cCceEEEEEeCCCccccc
Q 006923 223 FGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHD-AGLKWVLFFQDTNGLLFK 301 (625)
Q Consensus 223 FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~-~G~~yi~v~~vDN~L~~~ 301 (625)
|. .+|..... . ++.---|..++... .++.+.. ...+++.+.+.|.+|...
T Consensus 60 -g~-----------~v~~~r~~--~----------l~~d~~~~~~si~~-----~l~~l~~~~~~d~v~~l~~tsPl~~~ 110 (222)
T TIGR03584 60 -GA-----------SVPFLRPK--E----------LADDFTGTAPVVKH-----AIEELKLQKQYDHACCIYATAPFLQA 110 (222)
T ss_pred -CC-----------EeEEeChH--H----------HcCCCCCchHHHHH-----HHHHHhhcCCCCEEEEecCCCCcCCH
Confidence 32 12221100 0 00000112222221 1333322 346889999999998775
Q ss_pred cchH-HHHHHhhcCCceeeeeccC
Q 006923 302 AIPA-SLGVSATKQYHVNSLAVPR 324 (625)
Q Consensus 302 ~DP~-~lG~~~~~~~~~~~kvv~r 324 (625)
-|-. .+..+.+++++..+-|++.
T Consensus 111 ~~I~~~i~~~~~~~~ds~~sv~~~ 134 (222)
T TIGR03584 111 KILKEAFELLKQPNAHFVFSVTSF 134 (222)
T ss_pred HHHHHHHHHHHhCCCCEEEEeecc
Confidence 4432 3344445678998888883
No 103
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=57.60 E-value=20 Score=36.74 Aligned_cols=64 Identities=22% Similarity=0.357 Sum_probs=47.5
Q ss_pred ceEEEEEcCCccccCCccCC--cccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCc-cchHHHHHH
Q 006923 140 NAAFVLVAGGLGERLGYNGI--KVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSD-DTHSRTQEL 216 (625)
Q Consensus 140 kvavvlLaGGlGTRLG~~~p--K~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~-~T~~~T~~~ 216 (625)
++++|+=| |||++.= |.++|+. +.+++++++++++....+ =-++|-||+ .+++....+
T Consensus 3 ~I~~IiQA-----RmgStRLpgKvLlpL~---~~pmI~~~lervrks~~~-----------d~ivvATS~~~~d~~l~~~ 63 (241)
T COG1861 3 MILVIIQA-----RMGSTRLPGKVLLPLG---GEPMIEYQLERVRKSKDL-----------DKIVVATSDKEEDDALEEV 63 (241)
T ss_pred cEEEEeee-----cccCccCCcchhhhcC---CCchHHHHHHHHhccccc-----------cceEEEecCCcchhHHHHH
Confidence 56677766 7777644 6789985 899999999999765433 247889998 567777788
Q ss_pred HHhCCC
Q 006923 217 LESNSY 222 (625)
Q Consensus 217 l~~~~~ 222 (625)
+.++.+
T Consensus 64 ~~~~G~ 69 (241)
T COG1861 64 CRSHGF 69 (241)
T ss_pred HHHcCe
Confidence 887764
No 104
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=38.48 E-value=33 Score=37.85 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=48.0
Q ss_pred ceEEEEEcCCccccC---CccCCcccCCCcCCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 006923 140 NAAFVLVAGGLGERL---GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (625)
Q Consensus 140 kvavvlLaGGlGTRL---G~~~pK~~lpv~~~~~~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~T~~~T~~~ 216 (625)
+.-.|++|||-|||| +-.-||.+||++ ++..+.+-+..+.+. + -.-+++.+-..-.+++++.
T Consensus 9 efqavV~a~~ggt~~p~~~~~~pKaLLPIg---n~PMi~YpL~~L~~~----g--------fteiiVv~~e~e~~~i~~a 73 (433)
T KOG1462|consen 9 EFQAVVLAGGGGTRMPEVTSRLPKALLPIG---NKPMILYPLNSLEQA----G--------FTEIIVVVNEDEKLDIESA 73 (433)
T ss_pred HhhhheeecCCceechhhhhhcchhhcccC---CcceeeeehhHHHhc----C--------CeEEEEEecHHHHHHHHHH
Confidence 445688999999998 458899999995 788888877776543 1 2234555556667788888
Q ss_pred HHhC
Q 006923 217 LESN 220 (625)
Q Consensus 217 l~~~ 220 (625)
|.++
T Consensus 74 l~~~ 77 (433)
T KOG1462|consen 74 LGSN 77 (433)
T ss_pred HhcC
Confidence 8765
No 105
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=32.17 E-value=1.3e+02 Score=27.76 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=41.2
Q ss_pred CccCCCceEEEEeceEEecCeEEEeEEEEEcCCCCeeEeCC-eeEccceeEeeCCCCCC-CCcccceecc
Q 006923 535 CSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRVGG-KVQNKGWTLEPVDHKDT-SVPEEIRIRG 602 (625)
Q Consensus 535 ~~i~~~s~L~v~G~~~~~~~v~l~G~liI~a~~g~~~~i~~-~v~N~g~~~~~~~~~~~-~~~~~~~~rg 602 (625)
+.|....++.++.+....+.+.+.|+|++.-..+-.+.... +|++.| .++.=++... ...-.++++|
T Consensus 15 V~I~~g~~v~lD~~~~~l~~l~I~G~L~f~~~~~~~L~a~~I~V~~Gg-~l~iGs~~~P~~~~~~I~L~G 83 (125)
T PF10162_consen 15 VVIPAGQTVLLDVSTPKLGSLIIGGTLIFDDDRDITLRAEYILVEGGG-RLIIGSEDCPFQGKATITLYG 83 (125)
T ss_pred EEECCCCEEEEcCCChheeEEEEEEEEEEccCCCCEEEEEEEEECCCC-eEEecCCCCCcCceEEEEEEc
Confidence 44667777777777667777777888888777666666666 666665 4443222221 2334455555
No 106
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.97 E-value=2.9e+02 Score=27.66 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=63.5
Q ss_pred cchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCcc-chHHHHHHHHhCCCCCCCCCcEEEEEecceeEEecCCCcee
Q 006923 171 TCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDD-THSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLA 249 (625)
Q Consensus 171 ~s~lql~~~~i~~l~~~~~~~~~g~~~~iPl~IMTS~~-T~~~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~ 249 (625)
-...+-.++.|.+|..-+.+ ..||++----.. -..+-+.+|++--.=|++... -+|..+-.+.-....++
T Consensus 50 ~~~~~~li~Ni~~Lr~~~~~------~giPVvyTaqp~~qs~~draLL~d~WGpgl~~~p---~~~~vv~~l~P~~~D~v 120 (218)
T COG1535 50 CPLMEQLIANIAKLRIWCKQ------AGIPVVYTAQPGEQSPEDRALLKDFWGPGLTASP---EQQKVVDELAPGADDTV 120 (218)
T ss_pred CccHHHHHHHHHHHHHHHHH------cCCcEEEEecCCcCCHHHHHHHHHhcCCCCCCCh---hhhhhHHhcCCCCCceE
Confidence 34677888999999888764 389987776665 455667777764444555331 12222211211112222
Q ss_pred cCCCCCCccccccCCCchhhHHHhhcChHHHHHHcCceEEEEEeC
Q 006923 250 MDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (625)
Q Consensus 250 l~~~~~~~i~~~P~GhGdi~~aL~~sGlL~~l~~~G~~yi~v~~v 294 (625)
| ..| -|.|+++|.+++.|++.|+..+.+-.|
T Consensus 121 L-------~kw-------rYsAF~~s~Llq~lr~~grdQLIItGV 151 (218)
T COG1535 121 L-------TKW-------RYSAFHRSPLLQMLREKGRDQLIITGV 151 (218)
T ss_pred E-------eee-------ehhhhhcChHHHHHHHcCCCcEEEeeh
Confidence 2 111 389999999999999999998876543
No 107
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=23.84 E-value=63 Score=28.91 Aligned_cols=30 Identities=23% Similarity=0.625 Sum_probs=23.2
Q ss_pred CcccccccccCCCCHHHHHHHHHHHhhcCCC
Q 006923 51 QSHLFEKWAAPGVDDNEKRAFFDQVAKLNSS 81 (625)
Q Consensus 51 Q~HL~~~~~~~~~~~~ek~~Ll~qL~~id~~ 81 (625)
|-.||+-|-. +=++++|..|+++|+.+|..
T Consensus 59 qlkLf~qWf~-~W~~~ern~fl~~Lee~D~~ 88 (98)
T PF14969_consen 59 QLKLFRQWFP-KWSEEERNKFLEQLEEIDPD 88 (98)
T ss_pred hHHHHHHHHh-hccHHHHHHHHHHHHHhChH
Confidence 5567776654 23579999999999999953
Done!