Query 006927
Match_columns 625
No_of_seqs 183 out of 292
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 16:29:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06045 Rhamnogal_lyase: Rham 100.0 2.9E-50 6.3E-55 394.3 19.4 176 1-179 4-203 (203)
2 PF09284 RhgB_N: Rhamnogalactu 100.0 1.9E-48 4.1E-53 386.9 24.3 230 7-287 2-244 (249)
3 PF14683 CBM-like: Polysacchar 100.0 3.4E-46 7.5E-51 360.0 12.3 165 421-610 1-167 (167)
4 PF14686 fn3_3: Polysaccharide 99.9 7.9E-22 1.7E-26 174.0 8.5 93 313-412 1-95 (95)
5 PF13620 CarboxypepD_reg: Carb 98.7 7.3E-08 1.6E-12 81.4 8.6 81 316-415 1-82 (82)
6 PF13715 DUF4480: Domain of un 98.3 6E-06 1.3E-10 70.9 10.4 88 316-428 1-88 (88)
7 cd03863 M14_CPD_II The second 97.8 7.4E-05 1.6E-09 81.5 9.2 79 314-415 296-374 (375)
8 cd03865 M14_CPE_H Peptidase M1 97.8 5.3E-05 1.1E-09 83.2 7.6 96 280-414 306-401 (402)
9 cd03864 M14_CPN Peptidase M14 97.7 9E-05 1.9E-09 81.3 8.8 76 315-414 316-391 (392)
10 cd06245 M14_CPD_III The third 97.5 0.00034 7.5E-09 76.1 9.1 76 315-415 287-362 (363)
11 cd03868 M14_CPD_I The first ca 97.4 0.00046 1E-08 75.2 7.9 74 314-409 295-368 (372)
12 cd03858 M14_CP_N-E_like Carbox 97.3 0.00068 1.5E-08 73.9 9.1 72 315-409 298-370 (374)
13 cd03867 M14_CPZ Peptidase M14- 97.0 0.0023 5E-08 70.5 8.6 71 316-409 319-391 (395)
14 cd03866 M14_CPM Peptidase M14 96.1 0.019 4E-07 63.0 8.6 70 314-404 294-363 (376)
15 PF08400 phage_tail_N: Prophag 95.3 0.097 2.1E-06 49.5 8.7 78 316-405 4-81 (134)
16 PRK15036 hydroxyisourate hydro 94.8 0.071 1.5E-06 50.6 6.4 65 312-387 24-92 (137)
17 PF08308 PEGA: PEGA domain; I 94.6 0.2 4.3E-06 41.4 8.1 45 368-416 25-69 (71)
18 PF03422 CBM_6: Carbohydrate b 93.8 0.42 9.2E-06 43.3 9.2 80 519-611 44-124 (125)
19 PF09430 DUF2012: Protein of u 92.8 0.56 1.2E-05 43.4 8.4 40 360-402 22-61 (123)
20 KOG1948 Metalloproteinase-rela 92.4 1.7 3.8E-05 51.7 13.3 52 315-385 316-368 (1165)
21 cd00421 intradiol_dioxygenase 92.1 0.45 9.7E-06 45.4 7.0 64 313-382 10-80 (146)
22 cd03869 M14_CPX_like Peptidase 91.3 0.47 1E-05 52.7 7.0 68 313-404 328-395 (405)
23 PF05738 Cna_B: Cna protein B- 90.8 1 2.2E-05 36.7 7.0 45 362-407 21-67 (70)
24 PF07210 DUF1416: Protein of u 89.6 1.9 4.1E-05 37.7 7.6 62 313-391 6-67 (85)
25 PF07495 Y_Y_Y: Y_Y_Y domain; 88.6 0.67 1.5E-05 37.3 4.1 28 361-388 21-49 (66)
26 cd03463 3,4-PCD_alpha Protocat 87.3 1.2 2.6E-05 44.4 5.8 63 313-381 35-106 (185)
27 PF03170 BcsB: Bacterial cellu 86.8 1.6 3.4E-05 50.8 7.3 77 506-596 30-111 (605)
28 cd03459 3,4-PCD Protocatechuat 86.4 1.5 3.2E-05 42.7 5.7 64 313-382 14-87 (158)
29 cd03462 1,2-CCD chlorocatechol 84.8 2.5 5.5E-05 44.0 6.9 64 312-381 97-165 (247)
30 cd03464 3,4-PCD_beta Protocate 83.9 4.2 9.2E-05 41.7 8.0 64 312-381 63-136 (220)
31 TIGR02465 chlorocat_1_2 chloro 83.7 2.2 4.8E-05 44.4 5.9 64 313-382 97-165 (246)
32 PF00775 Dioxygenase_C: Dioxyg 83.4 2.9 6.4E-05 41.5 6.5 64 313-382 28-98 (183)
33 TIGR02423 protocat_alph protoc 82.0 2.7 5.9E-05 42.2 5.7 64 313-382 38-111 (193)
34 TIGR02422 protocat_beta protoc 81.7 5 0.00011 41.2 7.5 65 311-381 57-131 (220)
35 PRK10340 ebgA cryptic beta-D-g 81.4 36 0.00077 42.5 16.1 42 4-45 715-756 (1021)
36 TIGR02962 hdxy_isourate hydrox 81.1 3.4 7.3E-05 38.0 5.5 55 331-395 12-71 (112)
37 COG3485 PcaH Protocatechuate 3 80.6 3 6.6E-05 42.9 5.5 64 313-382 71-143 (226)
38 PF10670 DUF4198: Domain of un 80.4 5 0.00011 39.5 6.9 62 314-386 150-211 (215)
39 PF02837 Glyco_hydro_2_N: Glyc 79.6 4.6 0.0001 38.3 6.2 70 505-596 70-140 (167)
40 KOG1948 Metalloproteinase-rela 78.1 5.9 0.00013 47.5 7.4 56 316-387 120-175 (1165)
41 TIGR02438 catachol_actin catec 78.0 3.4 7.5E-05 43.8 5.1 65 312-382 130-199 (281)
42 PRK11114 cellulose synthase re 77.8 3.7 8E-05 49.3 5.9 75 508-595 84-163 (756)
43 PF13364 BetaGal_dom4_5: Beta- 77.6 7.4 0.00016 35.4 6.6 65 507-592 39-104 (111)
44 smart00606 CBD_IV Cellulose Bi 77.2 26 0.00056 31.9 10.2 86 509-610 42-129 (129)
45 cd03458 Catechol_intradiol_dio 75.7 16 0.00035 38.4 9.2 65 312-382 102-171 (256)
46 cd03460 1,2-CTD Catechol 1,2 d 75.2 5.2 0.00011 42.5 5.6 65 312-382 122-191 (282)
47 TIGR02439 catechol_proteo cate 74.5 6 0.00013 42.1 5.8 65 312-382 126-195 (285)
48 PF00576 Transthyretin: HIUase 74.2 2.5 5.4E-05 38.9 2.5 55 331-394 12-71 (112)
49 cd05469 Transthyretin_like Tra 73.7 4.9 0.00011 37.1 4.3 56 331-395 12-71 (113)
50 cd05821 TLP_Transthyretin Tran 73.6 7.3 0.00016 36.4 5.5 68 314-395 6-77 (121)
51 cd03461 1,2-HQD Hydroxyquinol 71.5 7.9 0.00017 41.1 5.8 65 312-382 118-187 (277)
52 PF01060 DUF290: Transthyretin 69.9 8.9 0.00019 32.8 4.8 56 318-385 1-56 (80)
53 KOG2649 Zinc carboxypeptidase 68.4 19 0.00041 40.8 8.2 78 315-416 378-455 (500)
54 PF03170 BcsB: Bacterial cellu 67.7 11 0.00024 43.9 6.5 78 505-595 324-409 (605)
55 cd05822 TLP_HIUase HIUase (5-h 66.6 12 0.00027 34.4 5.3 55 331-395 12-71 (112)
56 COG2351 Transthyretin-like pro 66.2 21 0.00046 33.3 6.7 67 315-396 9-80 (124)
57 PF02929 Bgal_small_N: Beta ga 63.9 1.5E+02 0.0033 31.1 13.6 29 16-44 1-29 (276)
58 KOG4342 Alpha-mannosidase [Car 63.5 12 0.00026 43.6 5.6 49 5-55 706-756 (1078)
59 PF02369 Big_1: Bacterial Ig-l 62.4 61 0.0013 28.8 8.9 67 314-388 22-90 (100)
60 PF14315 DUF4380: Domain of un 61.1 1.6E+02 0.0035 30.9 13.2 33 13-45 5-38 (274)
61 smart00095 TR_THY Transthyreti 59.9 14 0.0003 34.6 4.3 67 315-395 4-74 (121)
62 PLN03059 beta-galactosidase; P 59.9 9.4 0.0002 46.2 4.1 86 504-596 620-715 (840)
63 PRK09525 lacZ beta-D-galactosi 58.5 18 0.00039 45.1 6.4 42 5-46 741-782 (1027)
64 PF14900 DUF4493: Domain of un 54.3 2.1E+02 0.0046 29.1 12.4 41 374-416 61-108 (235)
65 PF08531 Bac_rhamnosid_N: Alph 51.1 12 0.00026 36.5 2.6 59 522-596 6-66 (172)
66 PF07748 Glyco_hydro_38C: Glyc 50.7 1.8E+02 0.0039 32.0 12.1 125 15-152 89-225 (457)
67 PRK01318 membrane protein inse 49.8 4.6E+02 0.01 30.5 15.4 28 14-41 40-67 (521)
68 PF13754 Big_3_4: Bacterial Ig 44.9 50 0.0011 26.1 4.8 28 359-386 3-32 (54)
69 PRK10340 ebgA cryptic beta-D-g 44.3 32 0.0007 42.9 5.4 68 506-595 112-179 (1021)
70 cd03457 intradiol_dioxygenase_ 44.2 56 0.0012 32.7 6.2 62 315-381 27-100 (188)
71 PF01690 PLRV_ORF5: Potato lea 42.7 79 0.0017 35.9 7.6 68 354-431 74-145 (465)
72 PF03944 Endotoxin_C: delta en 41.8 95 0.0021 29.3 7.1 97 508-611 41-140 (143)
73 PF11008 DUF2846: Protein of u 39.8 35 0.00076 31.1 3.7 44 366-409 56-99 (117)
74 PF01263 Aldose_epim: Aldose 1 37.8 2.9E+02 0.0062 28.5 10.6 34 13-46 1-37 (300)
75 PF14849 YidC_periplas: YidC p 37.6 33 0.00072 35.2 3.6 27 14-40 1-27 (270)
76 PF07550 DUF1533: Protein of u 33.1 37 0.00081 27.9 2.5 19 575-593 36-55 (65)
77 PF11797 DUF3324: Protein of u 31.2 56 0.0012 30.9 3.7 30 374-403 102-131 (140)
78 PF12866 DUF3823: Protein of u 30.8 1.5E+02 0.0032 30.6 6.9 63 314-385 21-84 (222)
79 smart00634 BID_1 Bacterial Ig- 27.9 2.2E+02 0.0047 24.6 6.6 66 314-390 19-86 (92)
80 KOG0496 Beta-galactosidase [Ca 27.5 1.2E+02 0.0026 35.9 6.1 71 503-596 556-626 (649)
81 PF09912 DUF2141: Uncharacteri 27.4 1.3E+02 0.0029 27.4 5.3 20 367-386 42-61 (112)
82 PRK09525 lacZ beta-D-galactosi 26.3 91 0.002 39.1 5.3 68 506-595 123-191 (1027)
83 PF10794 DUF2606: Protein of u 24.2 4E+02 0.0087 25.1 7.6 61 319-385 44-105 (131)
84 PRK15172 putative aldose-1-epi 22.7 1.4E+02 0.003 31.6 5.2 36 11-46 9-44 (300)
85 PF14200 RicinB_lectin_2: Rici 22.4 1.2E+02 0.0027 26.4 4.0 38 333-378 34-72 (105)
86 PRK10150 beta-D-glucuronidase; 22.3 1.6E+02 0.0034 34.4 6.0 66 507-594 69-135 (604)
87 PF01190 Pollen_Ole_e_I: Polle 22.3 97 0.0021 27.1 3.3 37 332-373 18-54 (97)
88 PF15043 CNRIP1: CB1 cannabino 20.5 6.3E+02 0.014 25.0 8.6 62 3-65 20-90 (161)
No 1
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=100.00 E-value=2.9e-50 Score=394.31 Aligned_cols=176 Identities=64% Similarity=1.066 Sum_probs=170.5
Q ss_pred CCCCceEEEEeCcEEEEECCeEEEEEeCCCeeEEEEEEcCeecccccccCCCceeeEEEeecCCCCCCCCCceeeecCce
Q 006927 1 MSDSSVQLQIQDHHVVMDNGLLQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLVWSETGSTGTTGTDELIKGSD 80 (625)
Q Consensus 1 ~~~~~v~l~~~g~~vvldNg~l~vtv~k~~G~vtsl~y~G~enll~~~~~~~~~gY~d~~w~~~G~~~~~~~~~~~~gt~ 80 (625)
++.++|+|++++.+|+||||+|+|||+||+|+||+|+|+|++|||+..+++.++||||++|+.+| ...+|+++.||+
T Consensus 4 ~~~~~V~L~~~~~~VvldNGiVqVtls~p~G~VtgIkYnGi~NLle~~n~e~nrGYwD~~W~~~G---~~~~~~~~~gt~ 80 (203)
T PF06045_consen 4 SSSSGVTLTVQGRQVVLDNGIVQVTLSKPGGIVTGIKYNGIDNLLEVANKENNRGYWDLVWNEPG---SKGKFDRIKGTE 80 (203)
T ss_pred ccCCCeEEEEcCCEEEEECCEEEEEEcCCCceEEEEEECCEehhhcccCcccCCceEEEecccCC---ccccccccCCcE
Confidence 36789999999999999999999999999999999999999999999999999999999999999 567999999999
Q ss_pred EEEEEecCCEEEEEEEEeecccccCCccccceeEEEEEeCCcceeEEEEEeeccCCCCCCCCCcceEEEEecccc-----
Q 006927 81 FRVIVENEEQVEISFTRMWDISLQDKLAPLNIDKRYIMLGNTSGFYSYAIYEHMGEWPAFNLPQTRMVFKLRKDK----- 155 (625)
Q Consensus 81 ~~vi~~~~~~i~vs~~~~~~~s~~g~~~~l~l~~~~v~r~g~sgiY~y~i~~~~~~~p~~~lge~R~v~Rl~~~~----- 155 (625)
|+||++++++|||||+++|+||++++.+||+||+||||++|+||||+|+|++|+++||+++|+|+|+||||++++
T Consensus 81 f~Vi~~te~qVevSF~r~w~~s~~~~~~plnIDkryVm~rG~SGfY~YAI~e~~~~~Pa~~l~q~R~vfKl~~d~F~yma 160 (203)
T PF06045_consen 81 FSVIEQTEEQVEVSFSRTWDPSLDGKSVPLNIDKRYVMLRGSSGFYSYAIFEHPAGWPAFDLGQTRIVFKLNKDKFHYMA 160 (203)
T ss_pred EEEEEcCCCeEEEEEEcccCcCCCCCcceeEeeEEEEEecCCceEEEEEEEecCCCCCCcccceeEEEEECCccccceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -------------------cccccccceeEeeCCCCCCCCcee
Q 006927 156 -------------------CKELAFPEAVLLVNPIEPEFNGEV 179 (625)
Q Consensus 156 -------------------~~~l~~~eav~~~~~~d~~~~G~~ 179 (625)
+++|+|||||+|++|+||+++|||
T Consensus 161 i~d~rqr~mP~~~D~~~~~~~~l~y~eav~l~~p~~~~~~gev 203 (203)
T PF06045_consen 161 ISDDRQRIMPSPDDRDPARGQPLAYPEAVLLVNPINPQFRGEV 203 (203)
T ss_pred ecccccccCCChHHccccCCCcccCchhhhcCCCCCccccccC
Confidence 578999999999999999999986
No 2
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding []. ; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=100.00 E-value=1.9e-48 Score=386.92 Aligned_cols=230 Identities=20% Similarity=0.295 Sum_probs=149.6
Q ss_pred EEEEeCcEEEEECCe-EEEEEeCCCeeEEEEEEcCeecccccccCCCceeeEEEeecCCCCCCCCCceeeecCceEEEEE
Q 006927 7 QLQIQDHHVVMDNGL-LQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLVWSETGSTGTTGTDELIKGSDFRVIV 85 (625)
Q Consensus 7 ~l~~~g~~vvldNg~-l~vtv~k~~G~vtsl~y~G~enll~~~~~~~~~gY~d~~w~~~G~~~~~~~~~~~~gt~~~vi~ 85 (625)
+++++|+++|||.|. |+|+|++++|||+||+|+|+| |+ +.++.+|++ ||+| ++.+.++
T Consensus 2 G~t~sg~~~viDtga~Lvf~V~~s~gDitSi~y~g~E-lQ-~~~k~ShI~------SGLG-------------satVs~~ 60 (249)
T PF09284_consen 2 GYTDSGSNYVIDTGAGLVFKVSKSNGDITSIKYNGTE-LQ-YSSKNSHIN------SGLG-------------SATVSIT 60 (249)
T ss_dssp EEEE-SSEEEEE---TEEEEEETTT--EEEEEETTEE--B--SSS-BEET------T--S-------------S-EEEEE
T ss_pred ceEecCCcEEEECCCCEEEEEecCCCCeEEEEECCEe-ee-cCCccceec------cCCC-------------ccEEEEE
Confidence 689999999999764 999999999999999999998 55 778999999 8887 3555566
Q ss_pred ecCCEEEEEEEEeecccccCCccccceeEEEEEeCCcceeEEEEEeeccCCCCCCCCCcceEEEEecccc-cccccccce
Q 006927 86 ENEEQVEISFTRMWDISLQDKLAPLNIDKRYIMLGNTSGFYSYAIYEHMGEWPAFNLPQTRMVFKLRKDK-CKELAFPEA 164 (625)
Q Consensus 86 ~~~~~i~vs~~~~~~~s~~g~~~~l~l~~~~v~r~g~sgiY~y~i~~~~~~~p~~~lge~R~v~Rl~~~~-~~~l~~~ea 164 (625)
+..++|.|+|... +|+||||+|+|++.|||++ + .+ .+++|||+|+|+||++++ ..+.++.++
T Consensus 61 ~~~~~IkVt~~~~------------tLthyyv~r~g~~~IYmaT-~--~~--~e~~igelRfIaRL~~~~lpn~~~~~~~ 123 (249)
T PF09284_consen 61 TSGDYIKVTCKTG------------TLTHYYVARPGENNIYMAT-Y--IT--AEPSIGELRFIARLNRSILPNEYPYGDV 123 (249)
T ss_dssp EETTEEEEEEE-S------------SEEEEEEEETT--EEEEEE-E--ES--S--TTS-EEEEEEE-TTTS-EEETTGGG
T ss_pred eeCCEEEEEEEcC------------CeEEEEEEecCCceEEEEe-c--cC--CCCCccceEEEEEcccccCCCCCCcccc
Confidence 6677999999974 7899999999999999999 4 24 578999999999999988 221111111
Q ss_pred e-----EeeCCCCC--CCCceeeeceeeccccccccEEEEEeCCCceEEEEEcCCCccccCCcceeccccccCcc---EE
Q 006927 165 V-----LLVNPIEP--EFNGEVDDKYQYSCENRNLKVHGWICSDPAVGFWQITPSNEFRSGGPLKQNLTSHVGPI---TL 234 (625)
Q Consensus 165 v-----~~~~~~d~--~~~G~~~sKY~~s~~~~D~~vhG~~~~g~~vG~W~I~~s~E~~sGGP~kqdL~~h~g~~---~l 234 (625)
. ..+...|= ..+|+++||||++.+++|+++|||+ |+++|+|||++++|.+|||||+|||++|.++. ||
T Consensus 124 ~~~~g~taIEgsDVf~~~~G~TrSKfYSs~r~IDd~~hgv~--g~~vgv~mi~~~~E~SSGGPFfRDI~~~~~~~~~~Ly 201 (249)
T PF09284_consen 124 STTDGGTAIEGSDVFLVSDGQTRSKFYSSQRFIDDDVHGVS--GSAVGVYMIMSNYEKSSGGPFFRDINTNNGGDGNELY 201 (249)
T ss_dssp G--TT-EEEETTTEEEE-TTEEEEGGGG--BGGG-SEEEEE---SS-EEEEE----TT-SS-TT-B---EEE-SS-EEEE
T ss_pred cccCCceEEeeccEEEecCceEeeeeccccceeccceEEEe--cCCeEEEEEeCCccccCCCCchhhhhhccCCccceee
Confidence 1 11222221 1279999999999999999999998 89999999999999999999999999998765 89
Q ss_pred EEEecccccCccceecccCCCCcc-eeeceEEEEEeCCCCCCCCCccchhHHHH
Q 006927 235 AMFLSAHYGGEDLVLKLKQDEPWK-KVLGPVFFYINSFLDSDSDDPKAWLWEDA 287 (625)
Q Consensus 235 ~~~~s~H~~g~~~~~~~~~ge~w~-kv~GP~~~y~N~g~~~~~~~~~~~lw~Da 287 (625)
+||+|+|.+ +|+|| +|||||+|+|++|+++++++++ ..|+|.
T Consensus 202 ~ymnSgH~q----------TE~~R~GLhGPYaL~FT~g~~Ps~~~~D-~sff~~ 244 (249)
T PF09284_consen 202 NYMNSGHTQ----------TEPYRMGLHGPYALAFTDGGAPSASDLD-TSFFDD 244 (249)
T ss_dssp EEEE-STT------------S----EEEEEEEEEEESS----S------GGGGG
T ss_pred eeEecCccc----------CchhccccCCceEEEEcCCCCCCCcccc-ccchhh
Confidence 999999998 89999 9999999999999875444566 899886
No 3
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=100.00 E-value=3.4e-46 Score=360.00 Aligned_cols=165 Identities=56% Similarity=0.895 Sum_probs=116.3
Q ss_pred CceEEEeccCCCccceecCCCCCccccceeccCCchhhcccchhhccccCCCCCeEEEeeecCCCCCeeeeeecccCCCC
Q 006927 421 PTLWEIGIPSRSAAEFYIPDPDPTYVNKLYVNHPDRFRQYGLWERYSDLYPEGDLVYTVGVSDYKNDWFYAQVPRKKDDN 500 (625)
Q Consensus 421 ~~LweIG~pDrta~eF~~~d~~~~~~n~~~~~~~d~~r~yglW~r~~~~~P~~dl~ytVG~S~~~~Dw~ya~~~~~~~~~ 500 (625)
++|||||+|||+|.||+++| +++||||+ |+||+++||++|++|+||+| +++||||||+.+..
T Consensus 1 ~~iW~IG~~Drta~eF~~~~-------------~~~~r~~~-~~d~~~~~p~~~~~ytVG~S-~~~Dw~y~~~~~~~--- 62 (167)
T PF14683_consen 1 PTIWQIGTPDRTAAEFRNGD-------------PDKYRQYG-WSDYSRDFPWEDLTYTVGSS-PAKDWPYAQWGRVN--- 62 (167)
T ss_dssp SEEEEEE-SSSS-TTSBTHH--------------HHTTS---TT--TTS----S-EEETTTS--GGGSBSEEETTTS---
T ss_pred CcceEeCCCCCCchhhccCC-------------hhhhhhcC-cccchhhCCCCCCEEEEccC-cccCCcEEEEeccC---
Confidence 58999999999999999984 27899999 99999999998899999999 88899999997543
Q ss_pred CCcceeEEEEEEecCCCCCCcEEEEEEEecc-cCceEEEEEcCCCCCCCCcccccccCCCceeceeee-eeeEEEEEEee
Q 006927 501 SYEATTWQIKFKLDSVDQNATYKLRIALATA-NVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIH-GLYRLYSMDVP 578 (625)
Q Consensus 501 ~~~~~~w~I~F~L~~~~~~~~~tLriala~a-~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~-G~~~~~~~~ip 578 (625)
++|+|+|+|++++..+.+||||+||+| ++++++|+|||+....|. ..+++|+|++|+++| |+|++++|+||
T Consensus 63 ----~~w~I~F~l~~~~~~~~~tL~i~la~a~~~~~~~V~vNg~~~~~~~---~~~~~d~~~~r~g~~~G~~~~~~~~ip 135 (167)
T PF14683_consen 63 ----GTWTIKFDLDAVQLAGTYTLRIALAGASAGGRLQVSVNGWSGPFPS---APFGNDNAIYRSGIHRGNYRLYEFDIP 135 (167)
T ss_dssp ------EEEEEEE-GGG-S--EEEEEEEEEEETT-EEEEEETTEE--------------S--GGGT---S---EEEEEE-
T ss_pred ----CCEEEEEECCCCccCCcEEEEEEeccccCCCCEEEEEcCccCCccc---cccCCCCceeeCceecccEEEEEEEEc
Confidence 679999999999976799999999999 999999999997665432 357899999999998 99999999999
Q ss_pred cCCeeeeecEEEEEEecCCCCCceEEEEEEEE
Q 006927 579 AANLAAGENTIFLKQATSSSAVAGVMYDYIRF 610 (625)
Q Consensus 579 a~~L~~G~NtI~l~~~~g~s~~~~vmyD~IrL 610 (625)
+++|++|+|+|+|++++|++.++|||||||||
T Consensus 136 a~~L~~G~Nti~lt~~~gs~~~~gvmyD~I~L 167 (167)
T PF14683_consen 136 ASLLKAGENTITLTVPSGSGLSPGVMYDYIRL 167 (167)
T ss_dssp TTSS-SEEEEEEEEEE-S-GGSSEEEEEEEEE
T ss_pred HHHEEeccEEEEEEEccCCCccCeEEEEEEEC
Confidence 99999999999999999987889999999998
No 4
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=99.86 E-value=7.9e-22 Score=174.02 Aligned_cols=93 Identities=45% Similarity=0.846 Sum_probs=54.2
Q ss_pred CceEEEEEEEEeccccccCCccc-CceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEEcceee
Q 006927 313 QRGNISGRLQVQDRYVSDDYITV-DGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIG 391 (625)
Q Consensus 313 qRGtVsG~v~~~d~~~~~~~~pa-~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~~G~~G 391 (625)
+||+|+|+|+++|++.+ .++ ..++|+|+.+++.+ |+++||||+++|++|+|+|+|||||+|+|++|.+|++|
T Consensus 1 ~RG~VsG~l~l~dg~~~---~~~~~~~~Vgl~~~~d~~----q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g~~g 73 (95)
T PF14686_consen 1 QRGSVSGRLTLSDGVTN---PPAGANAVVGLAPPGDFQ----QNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADGIFG 73 (95)
T ss_dssp G-BEEEEEEE---SS-----TT--S-EEEEEE------------SS-EEEEE--TTSEEE---B-SEEEEEEEEE----T
T ss_pred CCCEEEEEEEEccCccc---CccceeEEEEeeeccccc----cCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEecccC
Confidence 59999999999985431 344 67899999998653 49999999999999999999999999999999999999
Q ss_pred eeee-eeEEEEeCCCceeccce
Q 006927 392 DYRN-DVVLTITEDSDIDMGDL 412 (625)
Q Consensus 392 ~~~~-~~~VtV~aG~t~~l~~l 412 (625)
||.. +.+|+|++|++++|++|
T Consensus 74 ~~~~~~~~ItV~~g~~~~lg~~ 95 (95)
T PF14686_consen 74 DYKVASDSITVSGGTTTDLGDL 95 (95)
T ss_dssp TEEEEEEEEEE-T-EEE-----
T ss_pred ceEEecceEEEcCCcEeccccC
Confidence 9995 78899999999988754
No 5
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.69 E-value=7.3e-08 Score=81.36 Aligned_cols=81 Identities=32% Similarity=0.448 Sum_probs=58.0
Q ss_pred EEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEEcceeeeeee
Q 006927 316 NISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRN 395 (625)
Q Consensus 316 tVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~~G~~G~~~~ 395 (625)
+|+|+|.-.+ +.|..+|.|.|.... .+..+-+.||++|+|.|.+++||+|+|.+..+|+. ..
T Consensus 1 tI~G~V~d~~------g~pv~~a~V~l~~~~---------~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~---~~ 62 (82)
T PF13620_consen 1 TISGTVTDAT------GQPVPGATVTLTDQD---------GGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQ---PQ 62 (82)
T ss_dssp -EEEEEEETT------SCBHTT-EEEET--T---------TTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE----E
T ss_pred CEEEEEEcCC------CCCcCCEEEEEEEee---------CCCEEEEEECCCceEEEEccCCEeEEEEEEECCcc---eE
Confidence 6899986554 799999999996432 33468899999999999999999999999987765 33
Q ss_pred e-eEEEEeCCCceeccceEEe
Q 006927 396 D-VVLTITEDSDIDMGDLVFE 415 (625)
Q Consensus 396 ~-~~VtV~aG~t~~l~~l~~~ 415 (625)
. ..|+|.+|++..+ ++.++
T Consensus 63 ~~~~v~v~~~~~~~~-~i~L~ 82 (82)
T PF13620_consen 63 TQENVTVTAGQTTTV-DITLE 82 (82)
T ss_dssp EEEEEEESSSSEEE---EEEE
T ss_pred EEEEEEEeCCCEEEE-EEEEC
Confidence 3 3599999998887 56653
No 6
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=98.30 E-value=6e-06 Score=70.87 Aligned_cols=88 Identities=27% Similarity=0.412 Sum_probs=66.6
Q ss_pred EEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEEcceeeeeee
Q 006927 316 NISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRN 395 (625)
Q Consensus 316 tVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~~G~~G~~~~ 395 (625)
+|+|+|+-.+ .+.|..+|.|.+.... ..+.||++|.|+|. +++|+|+|.+...|+. ..
T Consensus 1 ti~G~V~d~~-----t~~pl~~a~V~~~~~~-------------~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy~---~~ 58 (88)
T PF13715_consen 1 TISGKVVDSD-----TGEPLPGATVYLKNTK-------------KGTVTDENGRFSIK-LPEGDYTLKISYIGYE---TK 58 (88)
T ss_pred CEEEEEEECC-----CCCCccCeEEEEeCCc-------------ceEEECCCeEEEEE-EcCCCeEEEEEEeCEE---EE
Confidence 5899986443 3799999999985332 66889999999999 9999999999986665 56
Q ss_pred eeEEEEeCCCceeccceEEeeCCCCCceEEEec
Q 006927 396 DVVLTITEDSDIDMGDLVFEPIRDGPTLWEIGI 428 (625)
Q Consensus 396 ~~~VtV~aG~t~~l~~l~~~~p~~g~~LweIG~ 428 (625)
...|.+..++...+ .+.+.+ ...+|-||.+
T Consensus 59 ~~~i~~~~~~~~~~-~i~L~~--~~~~L~eVvV 88 (88)
T PF13715_consen 59 TITISVNSNKNTNL-NIYLEP--KSNQLDEVVV 88 (88)
T ss_pred EEEEEecCCCEEEE-EEEEee--CcccCCeEEC
Confidence 55677766655556 577774 5667877753
No 7
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=97.79 E-value=7.4e-05 Score=81.53 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=62.4
Q ss_pred ceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEEcceeeee
Q 006927 314 RGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDY 393 (625)
Q Consensus 314 RGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~~G~~G~~ 393 (625)
...|+|+|+-. ..+.|..+|.|.+... ...+.||.+|.|.+ .|+||+|+|+|++.|+.
T Consensus 296 ~~gI~G~V~D~-----~~g~pl~~AtV~V~g~-------------~~~~~Td~~G~f~~-~l~pG~ytl~vs~~GY~--- 353 (375)
T cd03863 296 HRGVRGFVLDA-----TDGRGILNATISVADI-------------NHPVTTYKDGDYWR-LLVPGTYKVTASARGYD--- 353 (375)
T ss_pred cCeEEEEEEeC-----CCCCCCCCeEEEEecC-------------cCceEECCCccEEE-ccCCeeEEEEEEEcCcc---
Confidence 47999998533 1368999999998532 25678999999999 69999999999997776
Q ss_pred eeeeEEEEeCCCceeccceEEe
Q 006927 394 RNDVVLTITEDSDIDMGDLVFE 415 (625)
Q Consensus 394 ~~~~~VtV~aG~t~~l~~l~~~ 415 (625)
..+.+|+|.+|+++.+ ++.++
T Consensus 354 ~~~~~v~V~~~~~~~~-~~~L~ 374 (375)
T cd03863 354 PVTKTVEVDSKGAVQV-NFTLS 374 (375)
T ss_pred cEEEEEEEcCCCcEEE-EEEec
Confidence 5555799999999887 46654
No 8
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=97.76 E-value=5.3e-05 Score=83.20 Aligned_cols=96 Identities=19% Similarity=0.305 Sum_probs=70.8
Q ss_pred cchhHHHHHHhhhhcccCCCCCCCCCCCCCCCCCceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccce
Q 006927 280 KAWLWEDAKQQTLNESESWPYSFPASEDFPKWNQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQ 359 (625)
Q Consensus 280 ~~~lw~Da~~~~~~E~~~WPy~f~~~~~y~~~~qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yq 359 (625)
+...|.+-|.-+. .|.....|| |+|+|+-. .+.|..+|.|.+... .
T Consensus 306 L~~~W~~n~~all--------------~~~~q~~~g-I~G~V~D~------~g~pI~~AtV~V~g~-------------~ 351 (402)
T cd03865 306 LKQYWEDNKNSLV--------------NYIEQVHRG-VKGFVKDL------QGNPIANATISVEGI-------------D 351 (402)
T ss_pred HHHHHHHHHHHHH--------------HHHHHhccc-eEEEEECC------CCCcCCCeEEEEEcC-------------c
Confidence 3378988875443 222233477 99998532 268888999998532 2
Q ss_pred EEEEeCCCcceEeCcccCCeeEEEEEEcceeeeeeeeeEEEEeCCCceeccceEE
Q 006927 360 FWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRNDVVLTITEDSDIDMGDLVF 414 (625)
Q Consensus 360 ywt~td~~G~F~I~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~ 414 (625)
..+.||.+|.|.+ .++||+|+|+|.+.|+. .....|+|.+++++.+ ++++
T Consensus 352 ~~~~T~~~G~Y~~-~L~pG~Ytv~vsa~Gy~---~~~~~V~V~~~~~~~v-df~L 401 (402)
T cd03865 352 HDITSAKDGDYWR-LLAPGNYKLTASAPGYL---AVVKKVAVPYSPAVRV-DFEL 401 (402)
T ss_pred cccEECCCeeEEE-CCCCEEEEEEEEecCcc---cEEEEEEEcCCCcEEE-eEEe
Confidence 4567999999998 89999999999998877 4456799999988777 3554
No 9
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=97.74 E-value=9e-05 Score=81.32 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=60.7
Q ss_pred eEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEEcceeeeee
Q 006927 315 GNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYR 394 (625)
Q Consensus 315 GtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~~G~~G~~~ 394 (625)
..|+|+|+..+ +.|..+|.|.+... ..-+.||++|.| +..++||+|+|++++.|+. .
T Consensus 316 ~gI~G~V~D~~------g~pi~~A~V~v~g~-------------~~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~---~ 372 (392)
T cd03864 316 QGIKGMVTDEN------NNGIANAVISVSGI-------------SHDVTSGTLGDY-FRLLLPGTYTVTASAPGYQ---P 372 (392)
T ss_pred CeEEEEEECCC------CCccCCeEEEEECC-------------ccceEECCCCcE-EecCCCeeEEEEEEEcCce---e
Confidence 48999986443 68999999998533 356789999999 9999999999999997776 6
Q ss_pred eeeEEEEeCCCceeccceEE
Q 006927 395 NDVVLTITEDSDIDMGDLVF 414 (625)
Q Consensus 395 ~~~~VtV~aG~t~~l~~l~~ 414 (625)
.+.+|+|.+++++.+ ++++
T Consensus 373 ~t~~v~V~~~~~~~~-df~L 391 (392)
T cd03864 373 STVTVTVGPAEATLV-NFQL 391 (392)
T ss_pred EEEEEEEcCCCcEEE-eeEe
Confidence 666799999887666 3544
No 10
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=97.50 E-value=0.00034 Score=76.08 Aligned_cols=76 Identities=16% Similarity=0.337 Sum_probs=60.2
Q ss_pred eEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEEcceeeeee
Q 006927 315 GNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYR 394 (625)
Q Consensus 315 GtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~~G~~G~~~ 394 (625)
-.|+|+|+-.+ +.|..+|.|.+.. .. .+.||.+|.|.+. ++||+|+|++.+.|+. .
T Consensus 287 ~gI~G~V~d~~------g~pi~~A~V~v~g-------------~~-~~~T~~~G~y~~~-L~pG~y~v~vs~~Gy~---~ 342 (363)
T cd06245 287 KGVHGVVTDKA------GKPISGATIVLNG-------------GH-RVYTKEGGYFHVL-LAPGQHNINVIAEGYQ---Q 342 (363)
T ss_pred cEEEEEEEcCC------CCCccceEEEEeC-------------CC-ceEeCCCcEEEEe-cCCceEEEEEEEeCce---e
Confidence 57999985432 6899999999842 12 5679999999997 9999999999997766 5
Q ss_pred eeeEEEEeCCCceeccceEEe
Q 006927 395 NDVVLTITEDSDIDMGDLVFE 415 (625)
Q Consensus 395 ~~~~VtV~aG~t~~l~~l~~~ 415 (625)
.+.+|+|.+++++.+ ++++.
T Consensus 343 ~~~~V~v~~~~~~~~-~f~L~ 362 (363)
T cd06245 343 EHLPVVVSHDEASSV-KIVLD 362 (363)
T ss_pred EEEEEEEcCCCeEEE-EEEec
Confidence 666799999888777 46653
No 11
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=97.35 E-value=0.00046 Score=75.23 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=57.4
Q ss_pred ceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEEcceeeee
Q 006927 314 RGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDY 393 (625)
Q Consensus 314 RGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~~G~~G~~ 393 (625)
.+.|+|+|+-.. +.|..+|.|.|... ...+.||++|.|.+ +++||+|+|++.+.|+.-
T Consensus 295 ~~~i~G~V~d~~------g~pv~~A~V~v~~~-------------~~~~~td~~G~y~~-~l~~G~Y~l~vs~~Gf~~-- 352 (372)
T cd03868 295 HIGVKGFVRDAS------GNPIEDATIMVAGI-------------DHNVTTAKFGDYWR-LLLPGTYTITAVAPGYEP-- 352 (372)
T ss_pred CCceEEEEEcCC------CCcCCCcEEEEEec-------------ccceEeCCCceEEe-cCCCEEEEEEEEecCCCc--
Confidence 478999985443 68999999998532 25688999999985 799999999999988762
Q ss_pred eeeeEEEEeCCCceec
Q 006927 394 RNDVVLTITEDSDIDM 409 (625)
Q Consensus 394 ~~~~~VtV~aG~t~~l 409 (625)
.....|+|.+|+++.+
T Consensus 353 ~~~~~v~v~~g~~~~~ 368 (372)
T cd03868 353 STVTDVVVKEGEATSV 368 (372)
T ss_pred eEEeeEEEcCCCeEEE
Confidence 1333477888988776
No 12
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=97.35 E-value=0.00068 Score=73.88 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=57.2
Q ss_pred eEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEEcceeeeee
Q 006927 315 GNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYR 394 (625)
Q Consensus 315 GtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~~G~~G~~~ 394 (625)
.+|+|+|+-.+ +.|..+|.|.|. +....+.||.+|.|.+. ++||+|+|.+...|+. .
T Consensus 298 ~~i~G~V~d~~------g~pl~~A~V~i~-------------~~~~~~~Td~~G~f~~~-l~~G~y~l~vs~~Gy~---~ 354 (374)
T cd03858 298 RGIKGFVRDAN------GNPIANATISVE-------------GINHDVTTAEDGDYWRL-LLPGTYNVTASAPGYE---P 354 (374)
T ss_pred CceEEEEECCC------CCccCCeEEEEe-------------cceeeeEECCCceEEEe-cCCEeEEEEEEEcCcc---e
Confidence 48999975432 689999999983 34478899999999986 7999999999997765 5
Q ss_pred eeeEEEEeC-CCceec
Q 006927 395 NDVVLTITE-DSDIDM 409 (625)
Q Consensus 395 ~~~~VtV~a-G~t~~l 409 (625)
++.+|.|.. |+++.+
T Consensus 355 ~~~~v~v~~~g~~~~~ 370 (374)
T cd03858 355 QTKSVVVPNDNSAVVV 370 (374)
T ss_pred EEEEEEEecCCceEEE
Confidence 555677777 887666
No 13
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=96.98 E-value=0.0023 Score=70.47 Aligned_cols=71 Identities=21% Similarity=0.221 Sum_probs=54.9
Q ss_pred EEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEEcceeeeeee
Q 006927 316 NISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRN 395 (625)
Q Consensus 316 tVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~~G~~G~~~~ 395 (625)
.|+|+|+-.+ +.|..+|.|.|. +....+.||++|.|. .+++||+|+|++.+.|+. ..
T Consensus 319 ~i~G~V~D~~------g~pi~~A~V~v~-------------g~~~~~~Td~~G~y~-~~l~~G~y~l~vs~~Gy~---~~ 375 (395)
T cd03867 319 GIKGFVKDKD------GNPIKGARISVR-------------GIRHDITTAEDGDYW-RLLPPGIHIVSAQAPGYT---KV 375 (395)
T ss_pred eeEEEEEcCC------CCccCCeEEEEe-------------ccccceEECCCceEE-EecCCCcEEEEEEecCee---eE
Confidence 6999986443 689999999984 334678899999997 579999999999997776 55
Q ss_pred eeEEEEeC--CCceec
Q 006927 396 DVVLTITE--DSDIDM 409 (625)
Q Consensus 396 ~~~VtV~a--G~t~~l 409 (625)
..+|+|.. ++...+
T Consensus 376 ~~~v~v~~~~~~~~~~ 391 (395)
T cd03867 376 MKRVTLPARMKRAGRV 391 (395)
T ss_pred EEEEEeCCcCCCceEe
Confidence 56688865 444444
No 14
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=96.11 E-value=0.019 Score=63.04 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=52.2
Q ss_pred ceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEEcceeeee
Q 006927 314 RGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDY 393 (625)
Q Consensus 314 RGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~~G~~G~~ 393 (625)
.+.|+|+|+ | ..+.|..+|.|.|...+ ...-+.||++|.|.+. ++||+|+|++.++|+.
T Consensus 294 ~~gI~G~V~--D----~~g~pi~~A~V~v~g~~-----------~~~~~~T~~~G~y~~~-l~pG~Y~v~vsa~Gy~--- 352 (376)
T cd03866 294 HLGVKGQVF--D----SNGNPIPNAIVEVKGRK-----------HICPYRTNVNGEYFLL-LLPGKYMINVTAPGFK--- 352 (376)
T ss_pred cCceEEEEE--C----CCCCccCCeEEEEEcCC-----------ceeEEEECCCceEEEe-cCCeeEEEEEEeCCcc---
Confidence 467999985 4 23689999999985322 1223469999999775 9999999999998876
Q ss_pred eeeeEEEEeCC
Q 006927 394 RNDVVLTITED 404 (625)
Q Consensus 394 ~~~~~VtV~aG 404 (625)
....+|.|.+.
T Consensus 353 ~~~~~v~v~~~ 363 (376)
T cd03866 353 TVITNVIIPYN 363 (376)
T ss_pred eEEEEEEeCCC
Confidence 45556777754
No 15
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=95.30 E-value=0.097 Score=49.49 Aligned_cols=78 Identities=27% Similarity=0.218 Sum_probs=54.7
Q ss_pred EEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEEcceeeeeee
Q 006927 316 NISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRN 395 (625)
Q Consensus 316 tVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~~G~~G~~~~ 395 (625)
.|||.|+ | +.|+|..++.+.|..-... .+==.+.-=+..|+++|.|.|. +.||.|.++++..|.. ..+
T Consensus 4 ~ISGvL~--d----g~G~pv~g~~I~L~A~~tS---~~Vv~~t~as~~t~~~G~Ys~~-~epG~Y~V~l~~~g~~--~~~ 71 (134)
T PF08400_consen 4 KISGVLK--D----GAGKPVPGCTITLKARRTS---STVVVGTVASVVTGEAGEYSFD-VEPGVYRVTLKVEGRP--PVY 71 (134)
T ss_pred EEEEEEe--C----CCCCcCCCCEEEEEEccCc---hheEEEEEEEEEcCCCceEEEE-ecCCeEEEEEEECCCC--cee
Confidence 5788864 4 4589999999999854321 0001244456789999999995 9999999999987764 234
Q ss_pred eeEEEEeCCC
Q 006927 396 DVVLTITEDS 405 (625)
Q Consensus 396 ~~~VtV~aG~ 405 (625)
-..|+|.+.+
T Consensus 72 vG~I~V~~dS 81 (134)
T PF08400_consen 72 VGDITVYEDS 81 (134)
T ss_pred EEEEEEecCC
Confidence 3457776543
No 16
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=94.78 E-value=0.071 Score=50.59 Aligned_cols=65 Identities=22% Similarity=0.211 Sum_probs=47.8
Q ss_pred CCceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEe---Cc-ccCCeeEEEEEEc
Q 006927 312 NQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSI---SD-ILVGDYNLYAFVP 387 (625)
Q Consensus 312 ~qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I---~n-VrpGtY~L~a~~~ 387 (625)
++.+.|+++|+-.. .++||.++.|-|....+ ++|+ --.-+.||++|+|.. .+ +.||.|.|.....
T Consensus 24 a~~~~Is~HVLDt~-----~G~PA~gV~V~L~~~~~-~~w~-----~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~ 92 (137)
T PRK15036 24 AQQNILSVHILNQQ-----TGKPAADVTVTLEKKAD-NGWL-----QLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTG 92 (137)
T ss_pred ccCCCeEEEEEeCC-----CCcCCCCCEEEEEEccC-CceE-----EEEEEEECCCCCCccccCcccCCCeeEEEEEEcc
Confidence 34467999997543 48999999999975432 2444 125578999999986 34 8899999999843
No 17
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=94.65 E-value=0.2 Score=41.38 Aligned_cols=45 Identities=16% Similarity=0.335 Sum_probs=36.8
Q ss_pred cceEeCcccCCeeEEEEEEcceeeeeeeeeEEEEeCCCceeccceEEee
Q 006927 368 GFFSISDILVGDYNLYAFVPGFIGDYRNDVVLTITEDSDIDMGDLVFEP 416 (625)
Q Consensus 368 G~F~I~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~~~ 416 (625)
...++..+++|.|+|.+..+|+. ..+..|.|.+|++..+ .+.+++
T Consensus 25 tp~~~~~l~~G~~~v~v~~~Gy~---~~~~~v~v~~~~~~~v-~~~L~~ 69 (71)
T PF08308_consen 25 TPLTLKDLPPGEHTVTVEKPGYE---PYTKTVTVKPGETTTV-NVTLEP 69 (71)
T ss_pred CcceeeecCCccEEEEEEECCCe---eEEEEEEECCCCEEEE-EEEEEE
Confidence 34578789999999999988766 5667799999999888 477764
No 18
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=93.82 E-value=0.42 Score=43.26 Aligned_cols=80 Identities=24% Similarity=0.372 Sum_probs=49.2
Q ss_pred CCcEEEEEEEecccC-ceEEEEEcCCCCCCCCcccccccCCCceeceeeeeeeEEEEEEeecCCeeeeecEEEEEEecCC
Q 006927 519 NATYKLRIALATANV-AELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAAGENTIFLKQATSS 597 (625)
Q Consensus 519 ~~~~tLriala~a~~-~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~g~ 597 (625)
.+.|+|++..|.... ++++|+||+.... ...+..++... -.-.|...+..| .|.+|.|+|+|....+.
T Consensus 44 ~g~y~~~~~~a~~~~~~~~~l~id~~~g~--~~~~~~~~~tg------~w~~~~~~~~~v---~l~~G~h~i~l~~~~~~ 112 (125)
T PF03422_consen 44 AGTYTLTIRYANGGGGGTIELRIDGPDGT--LIGTVSLPPTG------GWDTWQTVSVSV---KLPAGKHTIYLVFNGGD 112 (125)
T ss_dssp SEEEEEEEEEEESSSSEEEEEEETTTTSE--EEEEEEEE-ES------STTEEEEEEEEE---EEESEEEEEEEEESSSS
T ss_pred CceEEEEEEEECCCCCcEEEEEECCCCCc--EEEEEEEcCCC------CccccEEEEEEE---eeCCCeeEEEEEEECCC
Confidence 478889888887644 7999999993221 11121222111 011234444444 45569999999987764
Q ss_pred CCCceEEEEEEEEe
Q 006927 598 SAVAGVMYDYIRFE 611 (625)
Q Consensus 598 s~~~~vmyD~IrLe 611 (625)
+ ..+-.|+|+|+
T Consensus 113 ~--~~~niD~~~f~ 124 (125)
T PF03422_consen 113 G--WAFNIDYFQFT 124 (125)
T ss_dssp S--B-EEEEEEEEE
T ss_pred C--ceEEeEEEEEE
Confidence 3 45889999886
No 19
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=92.82 E-value=0.56 Score=43.44 Aligned_cols=40 Identities=18% Similarity=0.402 Sum_probs=31.0
Q ss_pred EEEEeCCCcceEeCcccCCeeEEEEEEcceeeeeeeeeEEEEe
Q 006927 360 FWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYRNDVVLTIT 402 (625)
Q Consensus 360 ywt~td~~G~F~I~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~ 402 (625)
+-+...++|+|.|.||++|+|.|.+-...+. |.. -.|.|.
T Consensus 22 ~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~--F~~-~RVdV~ 61 (123)
T PF09430_consen 22 ISAFVRSDGSFVFHNVPPGSYLLEVHSPDYV--FPP-YRVDVS 61 (123)
T ss_pred eEEEecCCCEEEeCCCCCceEEEEEECCCcc--ccC-EEEEEe
Confidence 3678899999999999999999999865433 222 346776
No 20
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=1.7 Score=51.72 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=42.8
Q ss_pred eEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCc-ccCCeeEEEEE
Q 006927 315 GNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISD-ILVGDYNLYAF 385 (625)
Q Consensus 315 GtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~n-VrpGtY~L~a~ 385 (625)
-+|+|||++.- .+.|..++.|.+. -+--.+||++|+|++.| +..|+|++.|-
T Consensus 316 fSvtGRVl~g~-----~g~~l~gvvvlvn--------------gk~~~kTdaqGyykLen~~t~gtytI~a~ 368 (1165)
T KOG1948|consen 316 FSVTGRVLVGS-----KGLPLSGVVVLVN--------------GKSGGKTDAQGYYKLENLKTDGTYTITAK 368 (1165)
T ss_pred EEeeeeEEeCC-----CCCCccceEEEEc--------------CcccceEcccceEEeeeeeccCcEEEEEe
Confidence 48999997652 3688889988873 23556899999999999 99999999996
No 21
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=92.12 E-value=0.45 Score=45.39 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=45.5
Q ss_pred CceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCccccc-------ccceEEEEeCCCcceEeCcccCCeeEE
Q 006927 313 QRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTEC-------KGYQFWTTTDADGFFSISDILVGDYNL 382 (625)
Q Consensus 313 qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~-------~~yqywt~td~~G~F~I~nVrpGtY~L 382 (625)
..=.+.|+|+-.+ +.|..+|.|-|-.....|....+. -..--...||++|.|.+.-|+||.|.+
T Consensus 10 ~~l~l~G~V~D~~------g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~ 80 (146)
T cd00421 10 EPLTLTGTVLDGD------GCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPYPI 80 (146)
T ss_pred CEEEEEEEEECCC------CCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCCCC
Confidence 3458999986444 788888999986555544333211 122335789999999999999999994
No 22
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=91.30 E-value=0.47 Score=52.65 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=48.2
Q ss_pred CceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEEcceeee
Q 006927 313 QRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGD 392 (625)
Q Consensus 313 qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~~G~~G~ 392 (625)
.|| |+|.|+ | ..+.|..+|.|.+..- .....|.++|.|-- =+.||+|+++|.++|+.
T Consensus 328 h~G-ikG~V~--d----~~g~~i~~a~i~v~g~-------------~~~v~t~~~GdywR-ll~pG~y~v~~~a~gy~-- 384 (405)
T cd03869 328 HRG-IKGVVR--D----KTGKGIPNAIISVEGI-------------NHDIRTASDGDYWR-LLNPGEYRVTAHAEGYT-- 384 (405)
T ss_pred hcC-ceEEEE--C----CCCCcCCCcEEEEecC-------------ccceeeCCCCceEE-ecCCceEEEEEEecCCC--
Confidence 354 899874 4 2367888899887432 24456778887654 38999999999998775
Q ss_pred eeeeeEEEEeCC
Q 006927 393 YRNDVVLTITED 404 (625)
Q Consensus 393 ~~~~~~VtV~aG 404 (625)
....+|+|..+
T Consensus 385 -~~~~~~~v~~~ 395 (405)
T cd03869 385 -SSTKNCEVGYE 395 (405)
T ss_pred -cccEEEEEcCC
Confidence 55566777754
No 23
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=90.84 E-value=1 Score=36.71 Aligned_cols=45 Identities=33% Similarity=0.520 Sum_probs=31.3
Q ss_pred EEeCCCcceEeCcccCCeeEEEEEE--cceeeeeeeeeEEEEeCCCce
Q 006927 362 TTTDADGFFSISDILVGDYNLYAFV--PGFIGDYRNDVVLTITEDSDI 407 (625)
Q Consensus 362 t~td~~G~F~I~nVrpGtY~L~a~~--~G~~G~~~~~~~VtV~aG~t~ 407 (625)
..+|++|.|.+.+++||+|.|.--. .|+.-. .....++|..++..
T Consensus 21 ~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~-~~~~~~~i~~~~~~ 67 (70)
T PF05738_consen 21 VTTDENGKYTFKNLPPGTYTLKETKAPDGYQLD-DTPYEFTITEDGDV 67 (70)
T ss_dssp EEGGTTSEEEEEEEESEEEEEEEEETTTTEEEE-ECEEEEEECTTSCE
T ss_pred EEECCCCEEEEeecCCeEEEEEEEECCCCCEEC-CCceEEEEecCCEE
Confidence 5689999999999999999999875 343311 12233666665543
No 24
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=89.61 E-value=1.9 Score=37.68 Aligned_cols=62 Identities=31% Similarity=0.374 Sum_probs=47.2
Q ss_pred CceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEEcceee
Q 006927 313 QRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIG 391 (625)
Q Consensus 313 qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~~G~~G 391 (625)
....|+|+|+ .+ +.|..+++|-|-.+... |- =-..++++|.|.+- ..||+.+|.+-+++-.|
T Consensus 6 ke~VItG~V~-~~------G~Pv~gAyVRLLD~sgE--Ft-------aEvvts~~G~FRFf-aapG~WtvRal~~~g~~ 67 (85)
T PF07210_consen 6 KETVITGRVT-RD------GEPVGGAYVRLLDSSGE--FT-------AEVVTSATGDFRFF-AAPGSWTVRALSRGGNG 67 (85)
T ss_pred ceEEEEEEEe-cC------CcCCCCeEEEEEcCCCC--eE-------EEEEecCCccEEEE-eCCCceEEEEEccCCCC
Confidence 3578999997 55 69999999998654422 21 22457899999995 89999999999876554
No 25
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=88.59 E-value=0.67 Score=37.32 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=21.9
Q ss_pred EEEeCCCc-ceEeCcccCCeeEEEEEEcc
Q 006927 361 WTTTDADG-FFSISDILVGDYNLYAFVPG 388 (625)
Q Consensus 361 wt~td~~G-~F~I~nVrpGtY~L~a~~~G 388 (625)
|....... .+++.+.+||+|+|.|.+..
T Consensus 21 W~~~~~~~~~~~~~~L~~G~Y~l~V~a~~ 49 (66)
T PF07495_consen 21 WITLGSYSNSISYTNLPPGKYTLEVRAKD 49 (66)
T ss_dssp EEEESSTS-EEEEES--SEEEEEEEEEEE
T ss_pred EEECCCCcEEEEEEeCCCEEEEEEEEEEC
Confidence 66777777 99999999999999999743
No 26
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=87.31 E-value=1.2 Score=44.42 Aligned_cols=63 Identities=27% Similarity=0.402 Sum_probs=46.7
Q ss_pred CceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCccccc-------ccceEE--EEeCCCcceEeCcccCCeeE
Q 006927 313 QRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTEC-------KGYQFW--TTTDADGFFSISDILVGDYN 381 (625)
Q Consensus 313 qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~-------~~yqyw--t~td~~G~F~I~nVrpGtY~ 381 (625)
..=.|+|+|+-.+ ++|..+|.|=+-.....|....+. .+++.| ..||++|.|++.-|+||-|.
T Consensus 35 ~~l~l~G~V~D~~------g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~ 106 (185)
T cd03463 35 ERITLEGRVYDGD------GAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVP 106 (185)
T ss_pred CEEEEEEEEECCC------CCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcC
Confidence 4568999986433 899999999997766665333211 345455 56899999999999999886
No 27
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=86.78 E-value=1.6 Score=50.82 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=54.2
Q ss_pred eEEEEEEecCCCCCCcEEEEEEEecc-----cCceEEEEEcCCCCCCCCcccccccCCCceeceeeeeeeEEEEEEeecC
Q 006927 506 TWQIKFKLDSVDQNATYKLRIALATA-----NVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAA 580 (625)
Q Consensus 506 ~w~I~F~L~~~~~~~~~tLriala~a-----~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~ 580 (625)
.-.|.|.+...+....++|+|.+.-+ ..+.++|.|||..... ..+...+. .....+|+||..
T Consensus 30 ~~~~~f~v~~~~~v~~a~L~L~~~~S~~l~~~~S~L~V~lNg~~v~s-----~~l~~~~~--------~~~~~~i~Ip~~ 96 (605)
T PF03170_consen 30 SRTIYFPVPADWVVTKATLNLSYTYSPSLLPERSQLTVSLNGQPVGS-----IPLDAESA--------QPQTVTIPIPPA 96 (605)
T ss_pred ceEEEEEcCCCccccceEEEEEEEECcccCCCcceEEEEECCEEeEE-----EecCcCCC--------CceEEEEecChh
Confidence 35677888776654567777777765 2368999999986541 11222221 357789999999
Q ss_pred CeeeeecEEEEEEecC
Q 006927 581 NLAAGENTIFLKQATS 596 (625)
Q Consensus 581 ~L~~G~NtI~l~~~~g 596 (625)
|..|.|.|.|+...-
T Consensus 97 -l~~g~N~l~~~~~~~ 111 (605)
T PF03170_consen 97 -LIKGFNRLTFEFIGH 111 (605)
T ss_pred -hcCCceEEEEEEEec
Confidence 999999999987543
No 28
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=86.37 E-value=1.5 Score=42.69 Aligned_cols=64 Identities=27% Similarity=0.341 Sum_probs=46.8
Q ss_pred CceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCccccc--------ccceEE--EEeCCCcceEeCcccCCeeEE
Q 006927 313 QRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTEC--------KGYQFW--TTTDADGFFSISDILVGDYNL 382 (625)
Q Consensus 313 qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~--------~~yqyw--t~td~~G~F~I~nVrpGtY~L 382 (625)
++=.|+|+|+-. ++.|..+|.|=+-+....|....+. .++..| ..||++|.|++.-|+||-|.+
T Consensus 14 ~~l~l~g~V~D~------~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~ 87 (158)
T cd03459 14 ERIILEGRVLDG------DGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPW 87 (158)
T ss_pred cEEEEEEEEECC------CCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCC
Confidence 345788998643 4899999999997666665333221 345545 568999999999999999983
No 29
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=84.83 E-value=2.5 Score=44.00 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=44.5
Q ss_pred CCceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCccccc---ccceE--EEEeCCCcceEeCcccCCeeE
Q 006927 312 NQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTEC---KGYQF--WTTTDADGFFSISDILVGDYN 381 (625)
Q Consensus 312 ~qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~---~~yqy--wt~td~~G~F~I~nVrpGtY~ 381 (625)
.++=.|+|+|+-.+ +.|..+|.|=+-+....|....+. ....+ ...||++|.|.+.-|+||.|-
T Consensus 97 G~~l~l~G~V~D~~------G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~Yp 165 (247)
T cd03462 97 HKPLLFRGTVKDLA------GAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVPYQ 165 (247)
T ss_pred CCEEEEEEEEEcCC------CCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCcC
Confidence 34568999986443 899999999986655554322111 11111 457899999999999999994
No 30
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=83.92 E-value=4.2 Score=41.68 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=46.1
Q ss_pred CCceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccc--------cccceEE--EEeCCCcceEeCcccCCeeE
Q 006927 312 NQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTE--------CKGYQFW--TTTDADGFFSISDILVGDYN 381 (625)
Q Consensus 312 ~qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~--------~~~yqyw--t~td~~G~F~I~nVrpGtY~ 381 (625)
.++=.|+|+|+-. ++.|..+|.|=+-+....|-...+ ..+++.+ ..||++|.|.|.-|+||.|.
T Consensus 63 G~~i~l~G~V~D~------~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp 136 (220)
T cd03464 63 GERIIVHGRVLDE------DGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYP 136 (220)
T ss_pred CCEEEEEEEEECC------CCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCcc
Confidence 4567889998643 389999999999766555533321 1234433 56899999999999999994
No 31
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=83.70 E-value=2.2 Score=44.40 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=45.9
Q ss_pred CceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccc---cccceE--EEEeCCCcceEeCcccCCeeEE
Q 006927 313 QRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTE---CKGYQF--WTTTDADGFFSISDILVGDYNL 382 (625)
Q Consensus 313 qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~---~~~yqy--wt~td~~G~F~I~nVrpGtY~L 382 (625)
+.=.|+|+|+-. ++.|..+|.|=+-....+|....+ .....+ +..||++|.|.+.-|+||-|-+
T Consensus 97 ~~l~v~G~V~D~------~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~Ypi 165 (246)
T TIGR02465 97 KPLLIRGTVRDL------SGTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQI 165 (246)
T ss_pred cEEEEEEEEEcC------CCCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCCC
Confidence 457899998643 389999999999666655533321 122233 5778999999999999998853
No 32
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=83.37 E-value=2.9 Score=41.54 Aligned_cols=64 Identities=27% Similarity=0.297 Sum_probs=39.5
Q ss_pred CceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccc-------cccceEEEEeCCCcceEeCcccCCeeEE
Q 006927 313 QRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTE-------CKGYQFWTTTDADGFFSISDILVGDYNL 382 (625)
Q Consensus 313 qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~-------~~~yqywt~td~~G~F~I~nVrpGtY~L 382 (625)
+.=.|.|+|+-.+ +.|..+|.|=+-.....|....+ .....=+..||++|.|++.-|+||.|.+
T Consensus 28 ~~l~l~G~V~D~~------g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~ 98 (183)
T PF00775_consen 28 EPLVLHGRVIDTD------GKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFRTIKPGPYPI 98 (183)
T ss_dssp -EEEEEEEEEETT------SSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEEEE----EEE
T ss_pred CEEEEEEEEECCC------CCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEEeeCCCCCCC
Confidence 3558999986544 89999999999766555533221 1123334778999999999999999964
No 33
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=81.96 E-value=2.7 Score=42.17 Aligned_cols=64 Identities=27% Similarity=0.445 Sum_probs=46.2
Q ss_pred CceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCccccc--------ccceEE--EEeCCCcceEeCcccCCeeEE
Q 006927 313 QRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTEC--------KGYQFW--TTTDADGFFSISDILVGDYNL 382 (625)
Q Consensus 313 qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~--------~~yqyw--t~td~~G~F~I~nVrpGtY~L 382 (625)
++=.++|+|+ | .++.|..+|.|=+-+...+|-...+. .+++-| ..||++|.|.+.-|+||.|-.
T Consensus 38 ~~l~l~G~V~--D----~~g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~ 111 (193)
T TIGR02423 38 ERIRLEGRVL--D----GDGHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPD 111 (193)
T ss_pred CEEEEEEEEE--C----CCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCC
Confidence 4568999986 4 23899999999997666665333211 244444 468999999999999998853
No 34
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=81.74 E-value=5 Score=41.16 Aligned_cols=65 Identities=25% Similarity=0.348 Sum_probs=46.0
Q ss_pred CCCceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccc--------cccceEE--EEeCCCcceEeCcccCCee
Q 006927 311 WNQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTE--------CKGYQFW--TTTDADGFFSISDILVGDY 380 (625)
Q Consensus 311 ~~qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~--------~~~yqyw--t~td~~G~F~I~nVrpGtY 380 (625)
..++=.|+|+|+-. ++.|..+|.|=+-+...+|....+ ..++.-+ ..||++|.|.+.-|+||-|
T Consensus 57 ~G~~i~l~G~V~D~------~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y 130 (220)
T TIGR02422 57 IGERIIVHGRVLDE------DGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPY 130 (220)
T ss_pred CCCEEEEEEEEECC------CCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCc
Confidence 34677899998643 389999999999666555533321 1223323 4589999999999999998
Q ss_pred E
Q 006927 381 N 381 (625)
Q Consensus 381 ~ 381 (625)
.
T Consensus 131 ~ 131 (220)
T TIGR02422 131 P 131 (220)
T ss_pred c
Confidence 4
No 35
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=81.44 E-value=36 Score=42.50 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=37.2
Q ss_pred CceEEEEeCcEEEEECCeEEEEEeCCCeeEEEEEEcCeeccc
Q 006927 4 SSVQLQIQDHHVVMDNGLLQVTISKPDGHVTRIQGYGIDNML 45 (625)
Q Consensus 4 ~~v~l~~~g~~vvldNg~l~vtv~k~~G~vtsl~y~G~enll 45 (625)
.++.+.+++..++|.++.++++|+|.+|.++|++++|++.|.
T Consensus 715 ~~~~~~~~~~~~~i~~~~~~~~fdk~tG~l~s~~~~g~~ll~ 756 (1021)
T PRK10340 715 RPLTLEEDRLSCTVRGYNFAITFSKVSGKLTSWQVNGESLLT 756 (1021)
T ss_pred CCeeEEecCCEEEEEeCCEEEEEECCcceEEEEEeCCeeeec
Confidence 346788899999999999999999999999999999997443
No 36
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=81.14 E-value=3.4 Score=38.04 Aligned_cols=55 Identities=25% Similarity=0.219 Sum_probs=39.2
Q ss_pred CCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceE-----eCcccCCeeEEEEEEcceeeeeee
Q 006927 331 DYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFS-----ISDILVGDYNLYAFVPGFIGDYRN 395 (625)
Q Consensus 331 ~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~-----I~nVrpGtY~L~a~~~G~~G~~~~ 395 (625)
.|+||.++.|-|..... +.|+ .-.-+.||+||+.. ...+.||.|+|..- .|+|-.
T Consensus 12 ~G~PAagv~V~L~~~~~-~~~~-----~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~----~g~Yf~ 71 (112)
T TIGR02962 12 SGKPAAGVPVTLYRLDG-SGWT-----PLAEGVTNADGRCPDLLPEGETLAAGIYKLRFD----TGDYFA 71 (112)
T ss_pred CCccCCCCEEEEEEecC-CCeE-----EEEEEEECCCCCCcCcccCcccCCCeeEEEEEE----hhhhhh
Confidence 38999999999964321 1243 12346799999987 45678999999997 566554
No 37
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.56 E-value=3 Score=42.86 Aligned_cols=64 Identities=23% Similarity=0.236 Sum_probs=46.3
Q ss_pred CceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccce-------EE--EEeCCCcceEeCcccCCeeEE
Q 006927 313 QRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQ-------FW--TTTDADGFFSISDILVGDYNL 382 (625)
Q Consensus 313 qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yq-------yw--t~td~~G~F~I~nVrpGtY~L 382 (625)
+|=.|+|+|+-.+ ++|..+|.|=+-+-+.+|-.....+.+. =| +.||++|.|.+.-|+||.|--
T Consensus 71 e~i~l~G~VlD~~------G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~ 143 (226)
T COG3485 71 ERILLEGRVLDGN------GRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPW 143 (226)
T ss_pred ceEEEEEEEECCC------CCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccC
Confidence 7889999986544 8999999999966555553331122222 23 668999999999999998843
No 38
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=80.36 E-value=5 Score=39.52 Aligned_cols=62 Identities=18% Similarity=0.110 Sum_probs=47.4
Q ss_pred ceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEE
Q 006927 314 RGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFV 386 (625)
Q Consensus 314 RGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~ 386 (625)
-..++.+|+.. |+|..++.|.+...+. |. +........+||++|.|+|+=-+||.|-|.+..
T Consensus 150 g~~~~~~vl~~-------GkPl~~a~V~~~~~~~---~~-~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~ 211 (215)
T PF10670_consen 150 GDPLPFQVLFD-------GKPLAGAEVEAFSPGG---WY-DVEHEAKTLKTDANGRATFTLPRPGLWLIRASH 211 (215)
T ss_pred CCEEEEEEEEC-------CeEcccEEEEEEECCC---cc-ccccceEEEEECCCCEEEEecCCCEEEEEEEEE
Confidence 46789999754 5999999999865542 22 112227889999999999998899999998863
No 39
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=79.56 E-value=4.6 Score=38.31 Aligned_cols=70 Identities=21% Similarity=0.234 Sum_probs=46.8
Q ss_pred eeEEEEEEecCCCCCCcEEEEEEEecccCceEEEEEcCCCCCCCCcccccccCCCceeceeeeeeeEEEEEEeecCCeee
Q 006927 505 TTWQIKFKLDSVDQNATYKLRIALATANVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAA 584 (625)
Q Consensus 505 ~~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~ 584 (625)
...+=+|.|++......+.|++... .....|.|||..+. ...+.+..++++|+. .|+.
T Consensus 70 ~wYr~~f~lp~~~~~~~~~L~f~gv---~~~a~v~vNG~~vg------------------~~~~~~~~~~~dIt~-~l~~ 127 (167)
T PF02837_consen 70 AWYRRTFTLPADWKGKRVFLRFEGV---DYAAEVYVNGKLVG------------------SHEGGYTPFEFDITD-YLKP 127 (167)
T ss_dssp EEEEEEEEESGGGTTSEEEEEESEE---ESEEEEEETTEEEE------------------EEESTTS-EEEECGG-GSSS
T ss_pred EEEEEEEEeCchhcCceEEEEeccc---eEeeEEEeCCeEEe------------------eeCCCcCCeEEeChh-hccC
Confidence 3456678887765333444555433 36779999997432 123456789999975 7889
Q ss_pred ee-cEEEEEEecC
Q 006927 585 GE-NTIFLKQATS 596 (625)
Q Consensus 585 G~-NtI~l~~~~g 596 (625)
|. |+|.+.+.+-
T Consensus 128 g~~N~l~V~v~~~ 140 (167)
T PF02837_consen 128 GEENTLAVRVDNW 140 (167)
T ss_dssp EEEEEEEEEEESS
T ss_pred CCCEEEEEEEeec
Confidence 98 9999999753
No 40
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=78.06 E-value=5.9 Score=47.52 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=38.9
Q ss_pred EEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEEc
Q 006927 316 NISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVP 387 (625)
Q Consensus 316 tVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~~ 387 (625)
+|+|+|+... +-.+.++-|-|... .+----|.|+++|.|.+.+|.||+|.+.+..+
T Consensus 120 sv~GkVlgaa------ggGpagV~velrs~----------e~~iast~T~~~Gky~f~~iiPG~Yev~ashp 175 (1165)
T KOG1948|consen 120 SVRGKVLGAA------GGGPAGVLVELRSQ----------EDPIASTKTEDGGKYEFRNIIPGKYEVSASHP 175 (1165)
T ss_pred eEeeEEeecc------CCCcccceeecccc----------cCcceeeEecCCCeEEEEecCCCceEEeccCc
Confidence 6777775443 23444556655322 22234578999999999999999999999854
No 41
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=78.03 E-value=3.4 Score=43.80 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=44.2
Q ss_pred CCceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccc---cccceEE--EEeCCCcceEeCcccCCeeEE
Q 006927 312 NQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTE---CKGYQFW--TTTDADGFFSISDILVGDYNL 382 (625)
Q Consensus 312 ~qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~---~~~yqyw--t~td~~G~F~I~nVrpGtY~L 382 (625)
.++=.|+|+|+-.+ ++|..+|.|-+-.....|....+ .....+. ..||++|.|.+.-|+||-|-+
T Consensus 130 G~pl~v~G~V~D~~------G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~Ypi 199 (281)
T TIGR02438 130 GTPLVFSGQVTDLD------GNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAPYQI 199 (281)
T ss_pred CCEEEEEEEEEcCC------CCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 34578999986333 79999999999554444432211 1122223 568999999999999999864
No 42
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=77.77 E-value=3.7 Score=49.27 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=49.1
Q ss_pred EEEEEecCCCCCCcEEEEEEEecc-----cCceEEEEEcCCCCCCCCcccccccCCCceeceeeeeeeEEEEEEeecCCe
Q 006927 508 QIKFKLDSVDQNATYKLRIALATA-----NVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANL 582 (625)
Q Consensus 508 ~I~F~L~~~~~~~~~tLriala~a-----~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L 582 (625)
.|.|.+...+....++|+|...-+ ..++++|.|||+.+.. ..+...+ .|.....+|+||+ .|
T Consensus 84 ~i~f~vp~d~~v~~A~L~L~y~~Sp~l~~~~S~L~V~lNg~~v~s-----~pL~~~~-------~~~~~~~~i~IP~-~l 150 (756)
T PRK11114 84 GIEFGVRSDEVVTKARLNLEYTYSPALLPDLSHLKVYLNGELMGT-----LPLDKEQ-------LGKKVLAQLPIDP-RF 150 (756)
T ss_pred eeEeecCccccccCcEEEEEEEECCCCCCCCCeEEEEECCEEeEE-----EecCccc-------CCCcceeEEecCH-HH
Confidence 677777666544456666665543 3478999999986531 1121111 2445788999999 56
Q ss_pred eeeecEEEEEEec
Q 006927 583 AAGENTIFLKQAT 595 (625)
Q Consensus 583 ~~G~NtI~l~~~~ 595 (625)
..|.|.|.|....
T Consensus 151 ~~g~N~L~~~~~~ 163 (756)
T PRK11114 151 ITDFNRLRLEFIG 163 (756)
T ss_pred cCCCceEEEEEec
Confidence 6899999998643
No 43
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=77.61 E-value=7.4 Score=35.36 Aligned_cols=65 Identities=23% Similarity=0.255 Sum_probs=39.0
Q ss_pred EEEEEEecCCCCCCcEEEE-EEEecccCceEEEEEcCCCCCCCCcccccccCCCceeceeeeeeeEEEEEEeecCCeeee
Q 006927 507 WQIKFKLDSVDQNATYKLR-IALATANVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAAG 585 (625)
Q Consensus 507 w~I~F~L~~~~~~~~~tLr-iala~a~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G 585 (625)
|+=+|..+. ....|+ |........+.+|.|||+.+.. +.+++ | -..+|.||++.|+.+
T Consensus 39 Yrg~F~~~~----~~~~~~~l~~~~g~~~~~~vwVNG~~~G~--------------~~~~~-g--~q~tf~~p~~il~~~ 97 (111)
T PF13364_consen 39 YRGTFTGTG----QDTSLTPLNIQGGNAFRASVWVNGWFLGS--------------YWPGI-G--PQTTFSVPAGILKYG 97 (111)
T ss_dssp EEEEEETTT----EEEEEE-EEECSSTTEEEEEEETTEEEEE--------------EETTT-E--CCEEEEE-BTTBTTC
T ss_pred EEEEEeCCC----cceeEEEEeccCCCceEEEEEECCEEeee--------------ecCCC-C--ccEEEEeCceeecCC
Confidence 555674211 124455 5565567789999999986531 00111 1 118999999999998
Q ss_pred ecEEEEE
Q 006927 586 ENTIFLK 592 (625)
Q Consensus 586 ~NtI~l~ 592 (625)
+|.|++-
T Consensus 98 n~v~~vl 104 (111)
T PF13364_consen 98 NNVLVVL 104 (111)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 5555443
No 44
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=77.18 E-value=26 Score=31.87 Aligned_cols=86 Identities=21% Similarity=0.355 Sum_probs=48.1
Q ss_pred EEEE-ecCCCCCCcEEEEEEEecc-cCceEEEEEcCCCCCCCCcccccccCCCceeceeeeeeeEEEEEEeecCCeeeee
Q 006927 509 IKFK-LDSVDQNATYKLRIALATA-NVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAAGE 586 (625)
Q Consensus 509 I~F~-L~~~~~~~~~tLriala~a-~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 586 (625)
|.|+ ++-. ..+.+++.|-.+.. ..+.++|++++.+.. ...+..++.... . -.++..+.+|+ |.+|.
T Consensus 42 ~~y~~vd~~-~~g~~~i~~~~as~~~~~~i~v~~d~~~G~--~~~~~~~p~tg~-----~-~~~~~~~~~v~---~~~G~ 109 (129)
T smart00606 42 IAYKDVDFG-SSGAYTFTARVASGNAGGSIELRLDSPTGT--LVGTVDVPSTGG-----W-QTYQTVSATVT---LPAGV 109 (129)
T ss_pred EEEEeEecC-CCCceEEEEEEeCCCCCceEEEEECCCCCc--EEEEEEeCCCCC-----C-ccCEEEEEEEc---cCCce
Confidence 4555 4322 23677777777765 446899999975432 111222332211 0 12344444443 44899
Q ss_pred cEEEEEEecCCCCCceEEEEEEEE
Q 006927 587 NTIFLKQATSSSAVAGVMYDYIRF 610 (625)
Q Consensus 587 NtI~l~~~~g~s~~~~vmyD~IrL 610 (625)
++|+|....++ .+..|.+++
T Consensus 110 ~~l~~~~~~~~----~~~ld~~~F 129 (129)
T smart00606 110 HDVYLVFKGGN----YFNIDWFRF 129 (129)
T ss_pred EEEEEEEECCC----cEEEEEEEC
Confidence 99999876653 277777754
No 45
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=75.72 E-value=16 Score=38.39 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=46.1
Q ss_pred CCceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccc---cccceEE--EEeCCCcceEeCcccCCeeEE
Q 006927 312 NQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTE---CKGYQFW--TTTDADGFFSISDILVGDYNL 382 (625)
Q Consensus 312 ~qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~---~~~yqyw--t~td~~G~F~I~nVrpGtY~L 382 (625)
.++=.++|+|+-.+ +.|..+|.|=+-.....|....+ ......+ ..||++|.|.+.-|+||-|-+
T Consensus 102 G~~l~l~G~V~D~~------G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypi 171 (256)
T cd03458 102 GEPLFVHGTVTDTD------GKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPI 171 (256)
T ss_pred CcEEEEEEEEEcCC------CCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccC
Confidence 34568999986443 79999999998666555533321 1233333 668999999999999999954
No 46
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=75.24 E-value=5.2 Score=42.50 Aligned_cols=65 Identities=22% Similarity=0.313 Sum_probs=46.7
Q ss_pred CCceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCccc---ccccceEE--EEeCCCcceEeCcccCCeeEE
Q 006927 312 NQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQT---ECKGYQFW--TTTDADGFFSISDILVGDYNL 382 (625)
Q Consensus 312 ~qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~---~~~~yqyw--t~td~~G~F~I~nVrpGtY~L 382 (625)
.++=.|+|+|+-.+ +.|..+|.|=+-.....|.... ...+++.+ ..||++|.|.+.-|+||-|-+
T Consensus 122 Gepl~l~G~V~D~~------G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~Ypi 191 (282)
T cd03460 122 GETLVMHGTVTDTD------GKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYGV 191 (282)
T ss_pred CCEEEEEEEEECCC------CCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCcC
Confidence 45678999986443 8999999999976666554321 12233333 668999999999999999853
No 47
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=74.49 E-value=6 Score=42.09 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=46.3
Q ss_pred CCceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCccc---ccccceEE--EEeCCCcceEeCcccCCeeEE
Q 006927 312 NQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQT---ECKGYQFW--TTTDADGFFSISDILVGDYNL 382 (625)
Q Consensus 312 ~qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~---~~~~yqyw--t~td~~G~F~I~nVrpGtY~L 382 (625)
.++=.|+|+|+-.+ ++|..+|.|=+-.....|.... ...+++.+ ..||++|.|.+.-|+||-|-+
T Consensus 126 G~pl~v~G~V~D~~------G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~Ypi 195 (285)
T TIGR02439 126 GETLFLHGQVTDAD------GKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGC 195 (285)
T ss_pred CcEEEEEEEEECCC------CCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcC
Confidence 34568999986433 8999999999976666653321 12233343 568999999999999998853
No 48
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=74.16 E-value=2.5 Score=38.89 Aligned_cols=55 Identities=31% Similarity=0.296 Sum_probs=37.1
Q ss_pred CCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcce-----EeCcccCCeeEEEEEEcceeeeee
Q 006927 331 DYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFF-----SISDILVGDYNLYAFVPGFIGDYR 394 (625)
Q Consensus 331 ~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F-----~I~nVrpGtY~L~a~~~G~~G~~~ 394 (625)
.|+||.++.|-|....++++|+ --.-+.||+||+. .-..+.+|.|+|..- .|+|-
T Consensus 12 ~G~PA~gv~V~L~~~~~~~~~~-----~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~----~~~Yf 71 (112)
T PF00576_consen 12 TGKPAAGVPVTLYRLDSDGSWT-----LLAEGVTDADGRIKQPLLEGESLEPGIYKLVFD----TGDYF 71 (112)
T ss_dssp TTEE-TT-EEEEEEEETTSCEE-----EEEEEEBETTSEESSTSSETTTS-SEEEEEEEE----HHHHH
T ss_pred CCCCccCCEEEEEEecCCCCcE-----EEEEEEECCCCcccccccccccccceEEEEEEE----HHHhH
Confidence 4899999999997554344555 2234679999988 345788999999987 55544
No 49
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=73.72 E-value=4.9 Score=37.10 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=38.8
Q ss_pred CCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEe----CcccCCeeEEEEEEcceeeeeee
Q 006927 331 DYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSI----SDILVGDYNLYAFVPGFIGDYRN 395 (625)
Q Consensus 331 ~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I----~nVrpGtY~L~a~~~G~~G~~~~ 395 (625)
.|+||.++.|-|.....+++|+ .---++||+||+..- ..+.+|.|+|..- .|+|-.
T Consensus 12 ~G~PAagv~V~L~~~~~~~~w~-----~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~----t~~Yf~ 71 (113)
T cd05469 12 RGSPAANVAIKVFRKTADGSWE-----IFATGKTNEDGELHGLITEEEFXAGVYRVEFD----TKSYWK 71 (113)
T ss_pred CCccCCCCEEEEEEecCCCceE-----EEEEEEECCCCCccCccccccccceEEEEEEe----hHHhHh
Confidence 3899999999996532222344 223467999999852 3568999999997 565543
No 50
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=73.60 E-value=7.3 Score=36.39 Aligned_cols=68 Identities=13% Similarity=0.049 Sum_probs=45.7
Q ss_pred ceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceE----eCcccCCeeEEEEEEcce
Q 006927 314 RGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFS----ISDILVGDYNLYAFVPGF 389 (625)
Q Consensus 314 RGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~----I~nVrpGtY~L~a~~~G~ 389 (625)
|-.++=+|+-.- .|+||.++.|-|......+.|+ ..--++||+||+.. -..+.+|.|+|..-
T Consensus 6 ~~~ittHVLDt~-----~G~PAaGV~V~L~~~~~~~~w~-----~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~---- 71 (121)
T cd05821 6 KCPLMVKVLDAV-----RGSPAANVAVKVFKKTADGSWE-----PFASGKTTETGEIHGLTTDEQFTEGVYKVEFD---- 71 (121)
T ss_pred CCCcEEEEEECC-----CCccCCCCEEEEEEecCCCceE-----EEEEEEECCCCCCCCccCccccCCeeEEEEEe----
Confidence 566777776443 3899999999995422112344 23347799999875 23467899999997
Q ss_pred eeeeee
Q 006927 390 IGDYRN 395 (625)
Q Consensus 390 ~G~~~~ 395 (625)
.|+|-.
T Consensus 72 tg~Yf~ 77 (121)
T cd05821 72 TKAYWK 77 (121)
T ss_pred hhHhhh
Confidence 565543
No 51
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=71.50 E-value=7.9 Score=41.07 Aligned_cols=65 Identities=18% Similarity=0.299 Sum_probs=45.6
Q ss_pred CCceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccc---cccceEE--EEeCCCcceEeCcccCCeeEE
Q 006927 312 NQRGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTE---CKGYQFW--TTTDADGFFSISDILVGDYNL 382 (625)
Q Consensus 312 ~qRGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~---~~~yqyw--t~td~~G~F~I~nVrpGtY~L 382 (625)
.++=.|+|+|+-.+ +.|..+|.|=+-.....|....+ ..+...+ ..||++|.|.+.-|+||-|-+
T Consensus 118 G~~l~v~G~V~D~~------G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Ypi 187 (277)
T cd03461 118 GEPCFVHGRVTDTD------GKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYPI 187 (277)
T ss_pred CCEEEEEEEEEcCC------CCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 35678999986443 79999999998665555533221 1222222 568999999999999999875
No 52
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=69.85 E-value=8.9 Score=32.75 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=33.6
Q ss_pred EEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEE
Q 006927 318 SGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAF 385 (625)
Q Consensus 318 sG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~ 385 (625)
+|+|.=. +.|+.++.|-|-+... . ...+.-=-+.||++|+|+|..-......+.-|
T Consensus 1 ~G~L~C~-------~~P~~~~~V~L~e~d~---~--~~Ddll~~~~Td~~G~F~l~G~~~e~~~i~P~ 56 (80)
T PF01060_consen 1 KGQLMCG-------GKPAKNVKVKLWEDDY---F--DPDDLLDETKTDSDGNFELSGSTNEFTTIEPY 56 (80)
T ss_pred CeEEEeC-------CccCCCCEEEEEECCC---C--CCCceeEEEEECCCceEEEEEEccCCccccEE
Confidence 4777544 4999999999943321 0 01222222778999999997654444444333
No 53
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=68.37 E-value=19 Score=40.84 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=52.3
Q ss_pred eEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEEEcceeeeee
Q 006927 315 GNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAFVPGFIGDYR 394 (625)
Q Consensus 315 GtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~~~G~~G~~~ 394 (625)
--|+|-|. | ..+.|..+|+|-+..-..+ .+|..+|.|=- =..||.|.|+|.++|+. .
T Consensus 378 ~GIkG~V~--D----~~G~~I~NA~IsV~ginHd-------------v~T~~~GDYWR-LL~PG~y~vta~A~Gy~---~ 434 (500)
T KOG2649|consen 378 RGIKGLVF--D----DTGNPIANATISVDGINHD-------------VTTAKEGDYWR-LLPPGKYIITASAEGYD---P 434 (500)
T ss_pred hccceeEE--c----CCCCccCceEEEEecCcCc-------------eeecCCCceEE-eeCCcceEEEEecCCCc---c
Confidence 35899875 4 2389999999998654422 23555664432 27899999999997765 5
Q ss_pred eeeEEEEeCCCceeccceEEee
Q 006927 395 NDVVLTITEDSDIDMGDLVFEP 416 (625)
Q Consensus 395 ~~~~VtV~aG~t~~l~~l~~~~ 416 (625)
...+|+|..-..+.. ++++.+
T Consensus 435 ~tk~v~V~~~~a~~~-df~L~~ 455 (500)
T KOG2649|consen 435 VTKTVTVPPDRAARV-NFTLQR 455 (500)
T ss_pred eeeEEEeCCCCccce-eEEEec
Confidence 566788886333333 577763
No 54
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=67.67 E-value=11 Score=43.92 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=51.4
Q ss_pred eeEEEEEEecCCC---CCCcEEEEEEEecc-----cCceEEEEEcCCCCCCCCcccccccCCCceeceeeeeeeEEEEEE
Q 006927 505 TTWQIKFKLDSVD---QNATYKLRIALATA-----NVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMD 576 (625)
Q Consensus 505 ~~w~I~F~L~~~~---~~~~~tLriala~a-----~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ 576 (625)
.+..+.|.|+..- ......|.+..+.+ ..+++.|.|||.-+.. ..+.+ +-.+....+++.
T Consensus 324 ~~~~~~f~lP~dl~~~~~~~i~l~L~y~y~~~~~~~~S~l~V~vNg~~i~s-----~~L~~-------~~~~~~~~~~v~ 391 (605)
T PF03170_consen 324 QPISFNFRLPPDLFAWDGSGIPLHLRYRYTPGLDFDGSRLTVYVNGQFIGS-----LPLTP-------ADGAGFDRYTVS 391 (605)
T ss_pred CcceeEeeCCccccccCCCceEEEEEEecCCCCCCCCcEEEEEECCEEEEe-----EECCC-------CCCCccceeEEe
Confidence 4477888886632 22345555555554 3578999999985431 11211 223456789999
Q ss_pred eecCCeeeeecEEEEEEec
Q 006927 577 VPAANLAAGENTIFLKQAT 595 (625)
Q Consensus 577 ipa~~L~~G~NtI~l~~~~ 595 (625)
|| ..++.|.|+|.|...-
T Consensus 392 iP-~~~~~~~N~l~~~f~l 409 (605)
T PF03170_consen 392 IP-RLLLPGRNQLQFEFDL 409 (605)
T ss_pred cC-chhcCCCcEEEEEEEe
Confidence 99 9999999999887543
No 55
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=66.60 E-value=12 Score=34.39 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=38.8
Q ss_pred CCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEe-----CcccCCeeEEEEEEcceeeeeee
Q 006927 331 DYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSI-----SDILVGDYNLYAFVPGFIGDYRN 395 (625)
Q Consensus 331 ~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I-----~nVrpGtY~L~a~~~G~~G~~~~ 395 (625)
.|+||.++-|-|...... +|+ .-.-+.||+||+..- ..+.+|+|+|..- .|+|-.
T Consensus 12 ~G~PAagv~V~L~~~~~~-~~~-----~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~----~~~Yf~ 71 (112)
T cd05822 12 TGKPAAGVAVTLYRLDGN-GWT-----LLATGVTNADGRCDDLLPPGAQLAAGTYKLTFD----TGAYFA 71 (112)
T ss_pred CCcccCCCEEEEEEecCC-CeE-----EEEEEEECCCCCccCcccccccCCCeeEEEEEE----hhhhhh
Confidence 379999999999654321 233 223377999998753 4588999999997 555543
No 56
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=66.24 E-value=21 Score=33.31 Aligned_cols=67 Identities=22% Similarity=0.305 Sum_probs=46.1
Q ss_pred eEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEe-----CcccCCeeEEEEEEcce
Q 006927 315 GNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSI-----SDILVGDYNLYAFVPGF 389 (625)
Q Consensus 315 GtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I-----~nVrpGtY~L~a~~~G~ 389 (625)
|.++=.|+-.- .++||.++.|.|..-..+ .|+ ----+.||+||+-.- ..+++|.|+|..-
T Consensus 9 G~LTTHVLDta-----~GkPAagv~V~L~rl~~~-~~~-----~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~---- 73 (124)
T COG2351 9 GRLTTHVLDTA-----SGKPAAGVKVELYRLEGN-QWE-----LLKTVVTNADGRIDAPLLAGETLATGIYELVFH---- 73 (124)
T ss_pred ceeeeeeeecc-----cCCcCCCCEEEEEEecCC-cce-----eeeEEEecCCCcccccccCccccccceEEEEEE----
Confidence 56666665432 489999999999654432 233 123467899998763 4678999999987
Q ss_pred eeeeeee
Q 006927 390 IGDYRND 396 (625)
Q Consensus 390 ~G~~~~~ 396 (625)
.|||-..
T Consensus 74 ~gdYf~~ 80 (124)
T COG2351 74 TGDYFKS 80 (124)
T ss_pred cchhhhc
Confidence 7777643
No 57
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=63.88 E-value=1.5e+02 Score=31.11 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=25.1
Q ss_pred EEECCeEEEEEeCCCeeEEEEEEcCeecc
Q 006927 16 VMDNGLLQVTISKPDGHVTRIQGYGIDNM 44 (625)
Q Consensus 16 vldNg~l~vtv~k~~G~vtsl~y~G~enl 44 (625)
+|.++-.+++|+|.+|.++|++++|++.|
T Consensus 1 tV~g~~f~~~Fdk~~G~l~s~~~~g~~ll 29 (276)
T PF02929_consen 1 TVSGKDFSYVFDKKTGTLTSYKYNGKELL 29 (276)
T ss_dssp -EEETTEEEEEETTTTCEEEEEETTEEEE
T ss_pred CCccCCEEEEEECCCCeEEEEEECCEEee
Confidence 46778899999999999999999999744
No 58
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=63.52 E-value=12 Score=43.62 Aligned_cols=49 Identities=29% Similarity=0.482 Sum_probs=33.6
Q ss_pred ceEEEEeCcEEEEECCeEEEEEeCCCeeEEEEEE--cCeecccccccCCCcee
Q 006927 5 SVQLQIQDHHVVMDNGLLQVTISKPDGHVTRIQG--YGIDNMLEVRNKETNRG 55 (625)
Q Consensus 5 ~v~l~~~g~~vvldNg~l~vtv~k~~G~vtsl~y--~G~enll~~~~~~~~~g 55 (625)
+|-.-..+++++++||+|.|+|++ +|.||||.- .|.| .|+...+..+.|
T Consensus 706 p~~~yq~Dd~~~L~Ng~lrV~i~p-~G~itSl~d~~~grE-~ld~~~Grn~~G 756 (1078)
T KOG4342|consen 706 PVFVYQTDDSVTLDNGILRVKIDP-TGRITSLVDVASGRE-ALDTAEGRNAVG 756 (1078)
T ss_pred ceeEEecCCeEEEECCEEEEEECC-CCceeeeeehhcccc-hhcccccccccC
Confidence 444555788999999999999986 699999954 3443 443333433333
No 59
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=62.37 E-value=61 Score=28.75 Aligned_cols=67 Identities=24% Similarity=0.305 Sum_probs=34.7
Q ss_pred ceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcc--eEeCcccCCeeEEEEEEcc
Q 006927 314 RGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGF--FSISDILVGDYNLYAFVPG 388 (625)
Q Consensus 314 RGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~--F~I~nVrpGtY~L~a~~~G 388 (625)
...+.=++++.| ..+.|..+..|-+......+... .... -+.||++|. +++..-++|+|+++|.+.|
T Consensus 22 ~~~~tltatV~D----~~gnpv~g~~V~f~~~~~~~~l~--~~~~--~~~Td~~G~a~~tltst~aG~~~VtA~~~~ 90 (100)
T PF02369_consen 22 SDTNTLTATVTD----ANGNPVPGQPVTFSSSSSGGTLS--PTNT--SATTDSNGIATVTLTSTKAGTYTVTATVDG 90 (100)
T ss_dssp SS-EEEEEEEEE----TTSEB-TS-EEEE--EESSSEES---CEE---EEE-TTSEEEEEEE-SS-EEEEEEEEETT
T ss_pred cCcEEEEEEEEc----CCCCCCCCCEEEEEEcCCCcEEe--cCcc--ccEECCCEEEEEEEEecCceEEEEEEEECC
Confidence 334444444567 33788888888862111111111 0100 357899996 5666779999999999864
No 60
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=61.07 E-value=1.6e+02 Score=30.85 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=29.2
Q ss_pred cEEEEECCeEEEEEeCCCe-eEEEEEEcCeeccc
Q 006927 13 HHVVMDNGLLQVTISKPDG-HVTRIQGYGIDNML 45 (625)
Q Consensus 13 ~~vvldNg~l~vtv~k~~G-~vtsl~y~G~enll 45 (625)
+.+.|+|+.++++|+-.-| .|.++.++|.+|++
T Consensus 5 ~~~~l~N~~i~l~Vtp~~GgRIl~~~~~g~~N~~ 38 (274)
T PF14315_consen 5 NCLRLSNGDIELIVTPDVGGRILSFGLNGGENLF 38 (274)
T ss_pred eEEEEECCCEEEEEecCCCCEEEEEEeCCCceEE
Confidence 5689999999999987666 99999999988888
No 61
>smart00095 TR_THY Transthyretin.
Probab=59.86 E-value=14 Score=34.63 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=43.3
Q ss_pred eEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceE--e--CcccCCeeEEEEEEccee
Q 006927 315 GNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFS--I--SDILVGDYNLYAFVPGFI 390 (625)
Q Consensus 315 GtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~--I--~nVrpGtY~L~a~~~G~~ 390 (625)
-.++=+|+-.. .|+||.++.|-|......+.|+. ---..||+||+.. + ..+.+|.|+|..- .
T Consensus 4 ~plTtHVLDt~-----~G~PAagv~V~L~~~~~~~~w~~-----la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~----t 69 (121)
T smart00095 4 CPLMVKVLDAV-----RGSPAVNVAVKVFKKTEEGTWEP-----FASGKTNESGEIHELTTDEKFVEGLYKVEFD----T 69 (121)
T ss_pred CCeEEEEEECC-----CCccCCCCEEEEEEeCCCCceEE-----EEEEecCCCccccCccCcccccceEEEEEEe----h
Confidence 34566665433 38999999999954221123431 1236789999874 1 3567999999997 6
Q ss_pred eeeee
Q 006927 391 GDYRN 395 (625)
Q Consensus 391 G~~~~ 395 (625)
|+|-.
T Consensus 70 g~Yf~ 74 (121)
T smart00095 70 KSYWK 74 (121)
T ss_pred hHhHh
Confidence 66554
No 62
>PLN03059 beta-galactosidase; Provisional
Probab=59.86 E-value=9.4 Score=46.17 Aligned_cols=86 Identities=13% Similarity=0.107 Sum_probs=54.0
Q ss_pred ceeEEEEEEecCCCCCCcEEEEEEEecccCceEEEEEcCCCCCCCCccc--ccccCCCceeceee--------eeeeEEE
Q 006927 504 ATTWQIKFKLDSVDQNATYKLRIALATANVAELQVRVNDEKAEPPLFAT--GQIGHDNAIARHGI--------HGLYRLY 573 (625)
Q Consensus 504 ~~~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~t--~~~~~~~~i~R~~~--------~G~~~~~ 573 (625)
++=.+-.|+++... ... +|-....+.=+|.|||+.+.. -+.. ..-+=+.|-+|+++ .|.-...
T Consensus 620 ~twYK~~Fd~p~g~--Dpv----~LDm~gmGKG~aWVNG~nIGR-YW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~ 692 (840)
T PLN03059 620 LTWYKTTFDAPGGN--DPL----ALDMSSMGKGQIWINGQSIGR-HWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQR 692 (840)
T ss_pred ceEEEEEEeCCCCC--CCE----EEecccCCCeeEEECCccccc-ccccccccCCCccccccccccchhhhccCCCceeE
Confidence 34456788874421 112 233345667789999998875 2211 01112456777777 2456667
Q ss_pred EEEeecCCeeeeecEEEEEEecC
Q 006927 574 SMDVPAANLAAGENTIFLKQATS 596 (625)
Q Consensus 574 ~~~ipa~~L~~G~NtI~l~~~~g 596 (625)
-+.||+++|++|.|+|.|==..|
T Consensus 693 lYHVPr~~Lk~g~N~lViFEe~g 715 (840)
T PLN03059 693 WYHVPRSWLKPSGNLLIVFEEWG 715 (840)
T ss_pred EEeCcHHHhccCCceEEEEEecC
Confidence 78899999999999987754444
No 63
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=58.54 E-value=18 Score=45.08 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=37.0
Q ss_pred ceEEEEeCcEEEEECCeEEEEEeCCCeeEEEEEEcCeecccc
Q 006927 5 SVQLQIQDHHVVMDNGLLQVTISKPDGHVTRIQGYGIDNMLE 46 (625)
Q Consensus 5 ~v~l~~~g~~vvldNg~l~vtv~k~~G~vtsl~y~G~enll~ 46 (625)
.+.+.+.+..++|.++.++++|+|.+|.++|++++|.+.|.+
T Consensus 741 ~~~~~~~~~~~~i~~~~~~~~f~~~~G~l~s~~~~g~~~l~~ 782 (1027)
T PRK09525 741 APQLTQDEQDFCIELGNQRWQFNRQSGLLSQWWVGGKEQLLT 782 (1027)
T ss_pred CceEEEcCCeEEEEECCEEEEEECCCceEEEEEECCEEeecc
Confidence 346788899999999999999999999999999999975543
No 64
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=54.25 E-value=2.1e+02 Score=29.10 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=29.4
Q ss_pred cccCCeeEEEEEEcce---ee----eeeeeeEEEEeCCCceeccceEEee
Q 006927 374 DILVGDYNLYAFVPGF---IG----DYRNDVVLTITEDSDIDMGDLVFEP 416 (625)
Q Consensus 374 nVrpGtY~L~a~~~G~---~G----~~~~~~~VtV~aG~t~~l~~l~~~~ 416 (625)
-.++|+|+|.|+ .|- .| .|.-+..++|.+|+++.+. ++...
T Consensus 61 ~L~~G~Ytv~A~-~g~~~~~~~d~pyy~G~~~f~I~~g~~t~v~-v~C~l 108 (235)
T PF14900_consen 61 ELPVGSYTVKAS-YGDNVAAGFDKPYYEGSTTFTIEKGETTTVS-VTCKL 108 (235)
T ss_pred eecCCcEEEEEE-cCCCccccccCceeecceeEEEecCCcEEEE-EEEEe
Confidence 367899999999 541 12 2445668999999998874 66553
No 65
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=51.14 E-value=12 Score=36.50 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=31.4
Q ss_pred EEEEEEEecccCceEEEEEcCCCCCCCCcccccccCCCceeceee--eeeeEEEEEEeecCCeeeeecEEEEEEecC
Q 006927 522 YKLRIALATANVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGI--HGLYRLYSMDVPAANLAAGENTIFLKQATS 596 (625)
Q Consensus 522 ~tLriala~a~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~--~G~~~~~~~~ipa~~L~~G~NtI~l~~~~g 596 (625)
++|.| ++.+.+++.|||+.+..-.+.+ + ++.+ +-+|.. ++| +.+|++|+|+|-+.+..|
T Consensus 6 A~l~i----sa~g~Y~l~vNG~~V~~~~l~P-------~--~t~y~~~~~Y~t--yDV-t~~L~~G~N~iav~lg~g 66 (172)
T PF08531_consen 6 ARLYI----SALGRYELYVNGERVGDGPLAP-------G--WTDYDKRVYYQT--YDV-TPYLRPGENVIAVWLGNG 66 (172)
T ss_dssp -EEEE----EEESEEEEEETTEEEEEE-----------------BTTEEEEEE--EE--TTT--TTEEEEEEEEEE-
T ss_pred EEEEE----EeCeeEEEEECCEEeeCCcccc-------c--cccCCCceEEEE--EeC-hHHhCCCCCEEEEEEeCC
Confidence 44554 3667999999998654200000 0 1111 123444 444 678999999999998654
No 66
>PF07748 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-terminal domain; InterPro: IPR011682 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). This domain is found at the C terminus of glycosyl hydrolases from family 38.; GO: 0015923 mannosidase activity, 0006013 mannose metabolic process; PDB: 2WYI_A 2WYH_A 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=50.70 E-value=1.8e+02 Score=31.97 Aligned_cols=125 Identities=10% Similarity=0.181 Sum_probs=66.5
Q ss_pred EEEECCeEEEEEeCCCeeEEEE--EEcCeecccccccCCCceeeEEEeecCCCCCCCCCc---eeeecCceEEEEEecCC
Q 006927 15 VVMDNGLLQVTISKPDGHVTRI--QGYGIDNMLEVRNKETNRGYWDLVWSETGSTGTTGT---DELIKGSDFRVIVENEE 89 (625)
Q Consensus 15 vvldNg~l~vtv~k~~G~vtsl--~y~G~enll~~~~~~~~~gY~d~~w~~~G~~~~~~~---~~~~~gt~~~vi~~~~~ 89 (625)
.+|+|+.+.|+|+..+|.|++| +-+|.+ +... ....+..+ ...+ .... +..-......++.+++-
T Consensus 89 ~~leN~~~~v~~~~~tG~i~sl~dk~~g~~-~~~~----~~~~~~~y--~~~~---~~~~~~~~~~~~~~~~~~~~~g~~ 158 (457)
T PF07748_consen 89 NVLENEFYKVTFDPNTGGIKSLYDKKTGRE-YVDQ----DGNDFYIY--EDID---GDYDISPLELQRSGAYLFVEDGPL 158 (457)
T ss_dssp TEEETSSEEEEE-TTTSSEEEEEETTTS-E-EEEE----ECEEEEEE--EBTT---SCTTE-SCCCGSEECCEEEEESSS
T ss_pred EEEEccEEEEEEeCCCCeEEEEEEccCCeE-EEee----cCCceeEe--cccc---ccccccccccccCceEEEEecCCc
Confidence 6799999999999877999999 555554 3211 01111111 1111 0111 00101224444566776
Q ss_pred EEEEEEEEeec-cc------ccCCccccceeEEEEEeCCcceeEEEEEeeccCCCCCCCCCcceEEEEec
Q 006927 90 QVEISFTRMWD-IS------LQDKLAPLNIDKRYIMLGNTSGFYSYAIYEHMGEWPAFNLPQTRMVFKLR 152 (625)
Q Consensus 90 ~i~vs~~~~~~-~s------~~g~~~~l~l~~~~v~r~g~sgiY~y~i~~~~~~~p~~~lge~R~v~Rl~ 152 (625)
...|.....+. |. .........+.+.+.|.+|++-|..=+...+... +.. -++|+.|..+
T Consensus 159 ~~~i~~~~~~~~p~~~~~~~~~~~~~~~~i~~~i~L~~~~~~ie~~~~vdn~~~--~~~-~~l~~~f~t~ 225 (457)
T PF07748_consen 159 RSSIRVEYKFELPKNLSLVKRSEQTGSSRITQTIRLYKGSPRIEFETEVDNWAE--DHR-KELRVRFPTN 225 (457)
T ss_dssp EEEEEEEEEEEEESCBECEEEESCEEEEEEEEEEEEETTESSEEEEEEEEE-TT--SCE-EEEEEEEEES
T ss_pred eEEEEEEEEEeccCCcEEEEEEEeccceEEEEEEEEecCceEEEEEEEeccccc--CCc-eeEEEEeecC
Confidence 66666666551 00 0011133478999999999999988776653221 111 2567776665
No 67
>PRK01318 membrane protein insertase; Provisional
Probab=49.76 E-value=4.6e+02 Score=30.47 Aligned_cols=28 Identities=11% Similarity=0.313 Sum_probs=25.8
Q ss_pred EEEEECCeEEEEEeCCCeeEEEEEEcCe
Q 006927 14 HVVMDNGLLQVTISKPDGHVTRIQGYGI 41 (625)
Q Consensus 14 ~vvldNg~l~vtv~k~~G~vtsl~y~G~ 41 (625)
.++|+|+.++++|+..+|+|.++..+.-
T Consensus 40 ~i~v~td~~~~~is~~Gg~i~~~~Lk~y 67 (521)
T PRK01318 40 RITVETDVLRLSIDTKGGRIDDLLLKKY 67 (521)
T ss_pred EEEEEcCcEEEEEECCCCeeeeeeccCC
Confidence 7999999999999999999999988754
No 68
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=44.87 E-value=50 Score=26.08 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=20.8
Q ss_pred eEEEEeCCCcceEe--CcccCCeeEEEEEE
Q 006927 359 QFWTTTDADGFFSI--SDILVGDYNLYAFV 386 (625)
Q Consensus 359 qywt~td~~G~F~I--~nVrpGtY~L~a~~ 386 (625)
.|.+.+|++|.+++ +....|+|++++.+
T Consensus 3 ~~~~t~~~~G~Ws~t~~~~~dG~y~itv~a 32 (54)
T PF13754_consen 3 TYTTTVDSDGNWSFTVPALADGTYTITVTA 32 (54)
T ss_pred EEEEEECCCCcEEEeCCCCCCccEEEEEEE
Confidence 46777888997766 55556888888875
No 69
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=44.27 E-value=32 Score=42.88 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=46.7
Q ss_pred eEEEEEEecCCCCCCcEEEEEEEecccCceEEEEEcCCCCCCCCcccccccCCCceeceeeeeeeEEEEEEeecCCeeee
Q 006927 506 TWQIKFKLDSVDQNATYKLRIALATANVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAAG 585 (625)
Q Consensus 506 ~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G 585 (625)
..+=.|.+++........|++.. ......|.|||+.+.. . .|-+..++|+|.. .|+.|
T Consensus 112 ~Yrr~F~lp~~~~gkrv~L~FeG---V~s~a~VwvNG~~VG~----------~--------~g~~~pfefDIT~-~l~~G 169 (1021)
T PRK10340 112 AYQRTFTLSDGWQGKQTIIKFDG---VETYFEVYVNGQYVGF----------S--------KGSRLTAEFDISA-MVKTG 169 (1021)
T ss_pred EEEEEEEeCcccccCcEEEEECc---cceEEEEEECCEEecc----------c--------cCCCccEEEEcch-hhCCC
Confidence 45556998765433334455543 3567899999985531 1 1446778899986 67899
Q ss_pred ecEEEEEEec
Q 006927 586 ENTIFLKQAT 595 (625)
Q Consensus 586 ~NtI~l~~~~ 595 (625)
+|+|.+.+.+
T Consensus 170 ~N~LaV~V~~ 179 (1021)
T PRK10340 170 DNLLCVRVMQ 179 (1021)
T ss_pred ccEEEEEEEe
Confidence 9999999854
No 70
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=44.21 E-value=56 Score=32.71 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=41.8
Q ss_pred eEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccc---c--------ccceE-EEEeCCCcceEeCcccCCeeE
Q 006927 315 GNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTE---C--------KGYQF-WTTTDADGFFSISDILVGDYN 381 (625)
Q Consensus 315 GtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~---~--------~~yqy-wt~td~~G~F~I~nVrpGtY~ 381 (625)
=.+.|+|+-.+ .+.|..+|.|=|-.....|..... . ..+-. +..||++|.|++.-|.||-|.
T Consensus 27 l~l~g~V~D~~-----~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y~ 100 (188)
T cd03457 27 LTLDLQVVDVA-----TCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWYP 100 (188)
T ss_pred EEEEEEEEeCC-----CCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCCC
Confidence 47888875322 268999999999765555533221 1 11111 366899999999999999885
No 71
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=42.73 E-value=79 Score=35.93 Aligned_cols=68 Identities=10% Similarity=0.206 Sum_probs=44.8
Q ss_pred ccccceEEEEeC--CCcceEeCcccCCeeEEEEEEcceeeeeeeeeEEEEeCCC--ceeccceEEeeCCCCCceEEEecc
Q 006927 354 ECKGYQFWTTTD--ADGFFSISDILVGDYNLYAFVPGFIGDYRNDVVLTITEDS--DIDMGDLVFEPIRDGPTLWEIGIP 429 (625)
Q Consensus 354 ~~~~yqywt~td--~~G~F~I~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~--t~~l~~l~~~~p~~g~~LweIG~p 429 (625)
-+-.++|+...+ +.=.|.|+ |..|+|.+++...|++ . |.=..|. ---+|.|.+.. +....|.||..
T Consensus 74 ~~i~a~w~snn~~~A~p~f~~P-vp~G~~sV~isceG~q---~----v~~~gg~~dg~~~GlIAY~~--~~~~~WnvG~y 143 (465)
T PF01690_consen 74 VNIDAGWYSNNSVKAIPMFVFP-VPKGKWSVEISCEGYQ---A----VSSIGGPNDGKWDGLIAYDN--SSSDGWNVGNY 143 (465)
T ss_pred EEecceeEecCcceeeeEEEEe-cCCceEEEEEEeccee---c----ccccCCCCCCceeeeEEecC--ccccccccccc
Confidence 466777776655 44578887 9999999999987765 1 2212121 11356677763 44489999986
Q ss_pred CC
Q 006927 430 SR 431 (625)
Q Consensus 430 Dr 431 (625)
.+
T Consensus 144 ~g 145 (465)
T PF01690_consen 144 NG 145 (465)
T ss_pred cC
Confidence 54
No 72
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=41.84 E-value=95 Score=29.33 Aligned_cols=97 Identities=18% Similarity=0.286 Sum_probs=48.1
Q ss_pred EEEEEecCCCCCCcEEEEEEEecccCceEEEEEcCCCCC--CCCcccccccCCCceeceeeeeeeEEEEEEeecCCeeee
Q 006927 508 QIKFKLDSVDQNATYKLRIALATANVAELQVRVNDEKAE--PPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAAG 585 (625)
Q Consensus 508 ~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~--~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G 585 (625)
++++..+ ......|.+||-.|+.+.+.+.|.+++.... .+.-.| ..+... .+ .-.+.+...++.-+-. +..+
T Consensus 41 ~~~v~~~-~~~~~~YrIRiRYAs~~~~~~~i~~~~~~~~~~~~~~~T--~~~~~~-~~-~~y~~F~y~~~~~~~~-~~~~ 114 (143)
T PF03944_consen 41 KIRVTIN-NSSSQKYRIRIRYASNSNGTLSISINNSSGNLSFNFPST--MSNGDN-LT-LNYESFQYVEFPTPFT-FSSN 114 (143)
T ss_dssp EEEEEES-SSSTEEEEEEEEEEESS-EEEEEEETTEEEECEEEE--S--SSTTGG-CC-ETGGG-EEEEESSEEE-ESTS
T ss_pred EEEEEec-CCCCceEEEEEEEEECCCcEEEEEECCccceeeeecccc--ccCCCc-cc-cccceeEeeecCceEE-ecCC
Confidence 4444433 2334579999999998889999999987542 111112 111111 11 0112233333322111 1222
Q ss_pred e-cEEEEEEecCCCCCceEEEEEEEEe
Q 006927 586 E-NTIFLKQATSSSAVAGVMYDYIRFE 611 (625)
Q Consensus 586 ~-NtI~l~~~~g~s~~~~vmyD~IrLe 611 (625)
. .+|.|.+...++. ..|.-|=|++.
T Consensus 115 ~~~~~~i~i~~~~~~-~~v~IDkIEFI 140 (143)
T PF03944_consen 115 QSITITISIQNISSN-GNVYIDKIEFI 140 (143)
T ss_dssp EEEEEEEEEESSTTT-S-EEEEEEEEE
T ss_pred CceEEEEEEEecCCC-CeEEEEeEEEE
Confidence 2 5677765443222 58999999885
No 73
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=39.75 E-value=35 Score=31.06 Aligned_cols=44 Identities=11% Similarity=0.029 Sum_probs=29.4
Q ss_pred CCcceEeCcccCCeeEEEEEEcceeeeeeeeeEEEEeCCCceec
Q 006927 366 ADGFFSISDILVGDYNLYAFVPGFIGDYRNDVVLTITEDSDIDM 409 (625)
Q Consensus 366 ~~G~F~I~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l 409 (625)
..|.|.--.|+||+|++.+-.....+.-..+.+|+|.+|++--+
T Consensus 56 ~~g~y~~~~v~pG~h~i~~~~~~~~~~~~~~l~~~~~~G~~yy~ 99 (117)
T PF11008_consen 56 KNGGYFYVEVPPGKHTISAKSEFSSSPGANSLDVTVEAGKTYYV 99 (117)
T ss_pred CCCeEEEEEECCCcEEEEEecCccCCCCccEEEEEEcCCCEEEE
Confidence 45667777899999999995321111112566799999998543
No 74
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=37.84 E-value=2.9e+02 Score=28.50 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=28.8
Q ss_pred cEEEEECC-eEEEEEeCCCeeEEEEEEcC--eecccc
Q 006927 13 HHVVMDNG-LLQVTISKPDGHVTRIQGYG--IDNMLE 46 (625)
Q Consensus 13 ~~vvldNg-~l~vtv~k~~G~vtsl~y~G--~enll~ 46 (625)
+.|+|.|+ .+++.|+.-+|.|+|++.++ .|.|..
T Consensus 1 ~~itL~n~~~~~~~i~~~Ga~l~s~~~~~~~~~~l~~ 37 (300)
T PF01263_consen 1 DLITLENGNGLSAVIPEYGAELTSLQVKGNGREVLWQ 37 (300)
T ss_dssp EEEEEEETTSEEEEEETBTTEEEEEEETTTTEESB-B
T ss_pred CEEEEECCCceEEEEeccCcEEEEEEECCCCeEEecC
Confidence 36899998 89999999999999999999 764443
No 75
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=37.62 E-value=33 Score=35.22 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=22.1
Q ss_pred EEEEECCeEEEEEeCCCeeEEEEEEcC
Q 006927 14 HVVMDNGLLQVTISKPDGHVTRIQGYG 40 (625)
Q Consensus 14 ~vvldNg~l~vtv~k~~G~vtsl~y~G 40 (625)
+|+|+|+.+.++|+..+|.|.++.++.
T Consensus 1 ~v~ven~~~~~~~s~~GG~i~~~~Lk~ 27 (270)
T PF14849_consen 1 RVTVENDLFKVTFSSKGGRIKSVELKK 27 (270)
T ss_dssp -EEEE-SS-EEEEETBTTEEEEEEEEE
T ss_pred CEEEECCCEEEEEECCCCeEEEEEcCC
Confidence 589999999999999999999998763
No 76
>PF07550 DUF1533: Protein of unknown function (DUF1533); InterPro: IPR011432 This domain is found duplicated in proteins of unknown function. The proteins typically also contain leucine-rich repeats.
Probab=33.15 E-value=37 Score=27.90 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=16.8
Q ss_pred EEeecCCe-eeeecEEEEEE
Q 006927 575 MDVPAANL-AAGENTIFLKQ 593 (625)
Q Consensus 575 ~~ipa~~L-~~G~NtI~l~~ 593 (625)
+.|.+++| ++|+|+|+|.-
T Consensus 36 l~i~~~~f~~~G~~~I~I~A 55 (65)
T PF07550_consen 36 LKIKASAFNKDGENTIVIKA 55 (65)
T ss_pred EEEcHHHcCcCCceEEEEEe
Confidence 88889999 78999999983
No 77
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=31.24 E-value=56 Score=30.85 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=22.0
Q ss_pred cccCCeeEEEEEEcceeeeeeeeeEEEEeC
Q 006927 374 DILVGDYNLYAFVPGFIGDYRNDVVLTITE 403 (625)
Q Consensus 374 nVrpGtY~L~a~~~G~~G~~~~~~~VtV~a 403 (625)
.++||+|+|.+-+..-.+.-..+..++|++
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F~It~ 131 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDFTITA 131 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEEEECH
Confidence 799999999988755444445566688774
No 78
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=30.81 E-value=1.5e+02 Score=30.56 Aligned_cols=63 Identities=22% Similarity=0.371 Sum_probs=36.3
Q ss_pred ceEEEEEEEEecccccc-CCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeCcccCCeeEEEEE
Q 006927 314 RGNISGRLQVQDRYVSD-DYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSISDILVGDYNLYAF 385 (625)
Q Consensus 314 RGtVsG~v~~~d~~~~~-~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~nVrpGtY~L~a~ 385 (625)
-++++|+|. |.+... =.....++-+-|-+.+ |.. .+-|.+ ....||.|.-..+=+|+|.|..-
T Consensus 21 ~s~l~G~ii--D~~tgE~i~~~~~gv~i~l~e~g----y~~--~~~~~~-~v~qDGtf~n~~lF~G~Yki~~~ 84 (222)
T PF12866_consen 21 DSTLTGRII--DVYTGEPIQTDIGGVRIQLYELG----YGD--NTPQDV-YVKQDGTFRNTKLFDGDYKIVPK 84 (222)
T ss_dssp -EEEEEEEE--ECCTTEE----STSSEEEEECS-----CCG----SEEE-EB-TTSEEEEEEE-SEEEEEEE-
T ss_pred CceEEEEEE--EeecCCeeeecCCceEEEEEecc----ccc--CCCcce-EEccCCceeeeeEeccceEEEEc
Confidence 489999983 322111 0122246777776554 652 244444 36789999888899999999983
No 79
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=27.87 E-value=2.2e+02 Score=24.55 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=38.6
Q ss_pred ceEEEEEEEEeccccccCCcccCceEEEecCCCCCCCcccccccceEEEEeCCCcc--eEeCcccCCeeEEEEEEccee
Q 006927 314 RGNISGRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGF--FSISDILVGDYNLYAFVPGFI 390 (625)
Q Consensus 314 RGtVsG~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~--F~I~nVrpGtY~L~a~~~G~~ 390 (625)
...|+-+| .| ..+.|..+..|.+.-.+.. .....+ . ...+|++|. +.+..-.+|++++++.+.|..
T Consensus 19 ~~~i~v~v--~D----~~Gnpv~~~~V~f~~~~~~-~~~~~~--~--~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~~ 86 (92)
T smart00634 19 AITLTATV--TD----ANGNPVAGQEVTFTTPSGG-ALTLSK--G--TATTDANGIATVTLTSTTAGVYTVTASLENGS 86 (92)
T ss_pred cEEEEEEE--EC----CCCCCcCCCEEEEEECCCc-eeeccC--C--eeeeCCCCEEEEEEECCCCcEEEEEEEECCCc
Confidence 35565554 56 2367777777766544321 111111 1 236888996 445566789999999876543
No 80
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=27.53 E-value=1.2e+02 Score=35.95 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=47.7
Q ss_pred cceeEEEEEEecCCCCCCcEEEEEEEecccCceEEEEEcCCCCCCCCcccccccCCCceeceeeeeeeEEEEEEeecCCe
Q 006927 503 EATTWQIKFKLDSVDQNATYKLRIALATANVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANL 582 (625)
Q Consensus 503 ~~~~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L 582 (625)
+|-+|-=.|+.++... . ++|-....+.=+|.|||+++.. -+++ + |. ..++-||+++|
T Consensus 556 ~P~~w~k~f~~p~g~~--~----t~Ldm~g~GKG~vwVNG~niGR-YW~~--~------------G~--Q~~yhvPr~~L 612 (649)
T KOG0496|consen 556 QPLTWYKTFDIPSGSE--P----TALDMNGWGKGQVWVNGQNIGR-YWPS--F------------GP--QRTYHVPRSWL 612 (649)
T ss_pred CCeEEEEEecCCCCCC--C----eEEecCCCcceEEEECCccccc-ccCC--C------------CC--ceEEECcHHHh
Confidence 5677777787755432 1 1222235677899999998864 2322 1 44 66788999999
Q ss_pred eeeecEEEEEEecC
Q 006927 583 AAGENTIFLKQATS 596 (625)
Q Consensus 583 ~~G~NtI~l~~~~g 596 (625)
+.+.|.|.+---.+
T Consensus 613 k~~~N~lvvfEee~ 626 (649)
T KOG0496|consen 613 KPSGNLLVVFEEEG 626 (649)
T ss_pred CcCCceEEEEEecc
Confidence 99999988765444
No 81
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=27.43 E-value=1.3e+02 Score=27.37 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.8
Q ss_pred CcceEeCcccCCeeEEEEEE
Q 006927 367 DGFFSISDILVGDYNLYAFV 386 (625)
Q Consensus 367 ~G~F~I~nVrpGtY~L~a~~ 386 (625)
.-.++|++++||+|.+.++.
T Consensus 42 ~~~~~f~~lp~G~YAi~v~h 61 (112)
T PF09912_consen 42 TVTITFEDLPPGTYAIAVFH 61 (112)
T ss_pred cEEEEECCCCCccEEEEEEE
Confidence 44899999999999999984
No 82
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=26.29 E-value=91 Score=39.05 Aligned_cols=68 Identities=13% Similarity=0.132 Sum_probs=45.8
Q ss_pred eEEEEEEecCCCCCC-cEEEEEEEecccCceEEEEEcCCCCCCCCcccccccCCCceeceeeeeeeEEEEEEeecCCeee
Q 006927 506 TWQIKFKLDSVDQNA-TYKLRIALATANVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAA 584 (625)
Q Consensus 506 ~w~I~F~L~~~~~~~-~~tLriala~a~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~ 584 (625)
..+=.|.+++..... ...|++. +......|.|||+.+.. -.|-+.-++|+|. ..|+.
T Consensus 123 wYrr~F~vp~~w~~~~rv~L~Fe---GV~~~a~VwvNG~~VG~------------------~~g~~~pfefDIT-~~l~~ 180 (1027)
T PRK09525 123 CYSLTFTVDESWLQSGQTRIIFD---GVNSAFHLWCNGRWVGY------------------SQDSRLPAEFDLS-PFLRA 180 (1027)
T ss_pred EEEEEEEeChhhcCCCeEEEEEC---eeccEEEEEECCEEEEe------------------ecCCCceEEEECh-hhhcC
Confidence 345568887653322 3445544 35678899999985421 1244677899995 67789
Q ss_pred eecEEEEEEec
Q 006927 585 GENTIFLKQAT 595 (625)
Q Consensus 585 G~NtI~l~~~~ 595 (625)
|+|+|.+.+.+
T Consensus 181 G~N~L~V~V~~ 191 (1027)
T PRK09525 181 GENRLAVMVLR 191 (1027)
T ss_pred CccEEEEEEEe
Confidence 99999999854
No 83
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=24.17 E-value=4e+02 Score=25.13 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=39.1
Q ss_pred EEEEEeccccccCCcccCceEEEecCCCCCCCcccccccc-eEEEEeCCCcceEeCcccCCeeEEEEE
Q 006927 319 GRLQVQDRYVSDDYITVDGAYVGLAPSGDAGSWQTECKGY-QFWTTTDADGFFSISDILVGDYNLYAF 385 (625)
Q Consensus 319 G~v~~~d~~~~~~~~pa~~a~V~La~~g~~g~~q~~~~~y-qywt~td~~G~F~I~nVrpGtY~L~a~ 385 (625)
=++.+.| .++.|+..+.|.|-...+ +-+..++.- .-=.+||.+|.+.=+++|-|+|.+.+-
T Consensus 44 VT~hVen----~e~~pi~~~ev~lmKa~d--s~~qPs~eig~~IGKTD~~Gki~Wk~~~kG~Y~v~l~ 105 (131)
T PF10794_consen 44 VTFHVEN----AEGQPIKDFEVTLMKAAD--SDPQPSKEIGISIGKTDEEGKIIWKNGRKGKYIVFLP 105 (131)
T ss_pred EEEEEec----CCCCcccceEEEEEeccc--cCCCCchhhceeecccCCCCcEEEecCCcceEEEEEc
Confidence 3444555 568999999887753111 111111111 112469999999999999999998875
No 84
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=22.69 E-value=1.4e+02 Score=31.63 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=31.3
Q ss_pred eCcEEEEECCeEEEEEeCCCeeEEEEEEcCeecccc
Q 006927 11 QDHHVVMDNGLLQVTISKPDGHVTRIQGYGIDNMLE 46 (625)
Q Consensus 11 ~g~~vvldNg~l~vtv~k~~G~vtsl~y~G~enll~ 46 (625)
.+..++|.||.++++|..=+|.|++|+++|.+.++.
T Consensus 9 ~~~~~~l~~~~~~v~i~~~Ga~i~~l~~~~~~vv~~ 44 (300)
T PRK15172 9 SGQTISLAAGDYQATIVTVGAGLAELTFQGRHLVIP 44 (300)
T ss_pred CcCEEEEeCCCEEEEEecCCcEEEEEEECCEEEEec
Confidence 667899999999999999999999999998764553
No 85
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=22.39 E-value=1.2e+02 Score=26.41 Aligned_cols=38 Identities=26% Similarity=0.553 Sum_probs=25.4
Q ss_pred cccCceEEEecCCCCCCCcccccccceEEEEeC-CCcceEeCcccCC
Q 006927 333 ITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTD-ADGFFSISDILVG 378 (625)
Q Consensus 333 ~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td-~~G~F~I~nVrpG 378 (625)
..+.++.|.+ |.......|.|.... .+|.|.|.++..|
T Consensus 34 ~~~~g~~v~~--------~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~ 72 (105)
T PF14200_consen 34 STANGTNVQQ--------WTCNGNDNQQWKIEPVGDGYYRIRNKNSG 72 (105)
T ss_dssp TCSTTEBEEE--------EESSSSGGGEEEEEESTTSEEEEEETSTT
T ss_pred CcCCCcEEEE--------ecCCCCcCcEEEEEEecCCeEEEEECCCC
Confidence 3445666775 333357788886554 6788999888665
No 86
>PRK10150 beta-D-glucuronidase; Provisional
Probab=22.34 E-value=1.6e+02 Score=34.44 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=42.5
Q ss_pred EEEEEEecCCCCCCcEEEEEEEecccCceEEEEEcCCCCCCCCcccccccCCCceeceeeeeeeEEEEEEeecCCeeeee
Q 006927 507 WQIKFKLDSVDQNATYKLRIALATANVAELQVRVNDEKAEPPLFATGQIGHDNAIARHGIHGLYRLYSMDVPAANLAAGE 586 (625)
Q Consensus 507 w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 586 (625)
.+=.|.+++........|++.. ......|.|||+.+.. -.|-+..++|+|.. .|+.|+
T Consensus 69 Yrr~f~lp~~~~gk~v~L~Feg---v~~~a~V~lNG~~vg~------------------~~~~~~~f~~DIT~-~l~~G~ 126 (604)
T PRK10150 69 YQREVFIPKGWAGQRIVLRFGS---VTHYAKVWVNGQEVME------------------HKGGYTPFEADITP-YVYAGK 126 (604)
T ss_pred EEEEEECCcccCCCEEEEEECc---ccceEEEEECCEEeee------------------EcCCccceEEeCch-hccCCC
Confidence 3446888764432334455542 4456799999985431 12456778999975 677886
Q ss_pred c-EEEEEEe
Q 006927 587 N-TIFLKQA 594 (625)
Q Consensus 587 N-tI~l~~~ 594 (625)
| +|.+.+.
T Consensus 127 ~n~L~V~v~ 135 (604)
T PRK10150 127 SVRITVCVN 135 (604)
T ss_pred ceEEEEEEe
Confidence 5 9999984
No 87
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=22.28 E-value=97 Score=27.10 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=24.8
Q ss_pred CcccCceEEEecCCCCCCCcccccccceEEEEeCCCcceEeC
Q 006927 332 YITVDGAYVGLAPSGDAGSWQTECKGYQFWTTTDADGFFSIS 373 (625)
Q Consensus 332 ~~pa~~a~V~La~~g~~g~~q~~~~~yqywt~td~~G~F~I~ 373 (625)
..|..+|.|.|.=.+.++ .......+.||++|.|.|.
T Consensus 18 ~~~l~GA~V~v~C~~~~~-----~~~~~~~~~Td~~G~F~i~ 54 (97)
T PF01190_consen 18 AKPLPGAKVSVECKDGNG-----GVVFSAEAKTDENGYFSIE 54 (97)
T ss_pred CccCCCCEEEEECCCCCC-----CcEEEEEEEeCCCCEEEEE
Confidence 367788888886333110 0234566889999999996
No 88
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=20.49 E-value=6.3e+02 Score=24.97 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=41.9
Q ss_pred CCceEEEEeC------cEEEEECCe---EEEEEeCCCeeEEEEEEcCeecccccccCCCceeeEEEeecCCC
Q 006927 3 DSSVQLQIQD------HHVVMDNGL---LQVTISKPDGHVTRIQGYGIDNMLEVRNKETNRGYWDLVWSETG 65 (625)
Q Consensus 3 ~~~v~l~~~g------~~vvldNg~---l~vtv~k~~G~vtsl~y~G~enll~~~~~~~~~gY~d~~w~~~G 65 (625)
..+|-+..+| .+|.+--|. |.|++ ||....++|..+|.+.-++-.++..+..=+-..|+-.|
T Consensus 20 ~~PVffKvDG~RF~q~RTiKl~tdskYkv~V~~-kP~~~~~~~~igg~~~~l~~ks~d~~~~vYs~~~~T~G 90 (161)
T PF15043_consen 20 DGPVFFKVDGQRFGQNRTIKLLTDSKYKVDVTI-KPPTVETSLSIGGVSLPLEEKSRDEQSVVYSGQYDTEG 90 (161)
T ss_pred CCcEEEEecccccCCceEEEEecCCEEEEEEEE-cCCcceeeeEecceeeceeecccCCCeeEEEEEeecCC
Confidence 3455555555 457777663 88888 88999999999999755666566555553344456555
Done!