BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006928
(625 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 492 bits (1266), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/330 (71%), Positives = 281/330 (85%), Gaps = 5/330 (1%)
Query: 4 MTSLIGLINKIQRACTVLGDHGGEGM--SLWEALPXXXXXXXXXXXXXXXLESVVGRDFL 61
M +LI L+NKIQRACT LGDHG +LW++LP LES+VG+DFL
Sbjct: 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFL 60
Query: 62 PRGSGIVTRRPLVLQLHQTEGGT-DYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQ 120
PRGSGIVTRRPLVLQL + + GT +YAEFLH PRKKFTDFAAVRKEI DETDR TG+SK
Sbjct: 61 PRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKA 120
Query: 121 ISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAI 180
IS++PI LSIYSPNVVNLTLIDLPGLTKVAV+GQ +SIV+DIENMVRSY+EKP+CIILAI
Sbjct: 121 ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180
Query: 181 SPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGI 240
SPANQD+ATSDAIK++REVDP+G+RTFGVLTK+DLMDKGT+A+E+LEGRS++L++PWVG+
Sbjct: 181 SPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240
Query: 241 VNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIP 300
VNRSQADINKNVDMIAAR++EREYF + EY HLA+KMGSE+LAK+LS+HLERVI+ RIP
Sbjct: 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIP 300
Query: 301 SIIALINKNIDEINAELDRIGRPI--GVDS 328
I +LINK + E+ EL R+G+PI G DS
Sbjct: 301 GIQSLINKTVLELETELSRLGKPIAHGTDS 330
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 7/59 (11%)
Query: 570 RSLLNQFYAHVGRQEKERLGKMLDE------DPQLMDRRATLAKRLELYKSARDEIDAV 622
+SL+N+ + E RLGK + DP +M+RR+ ++KRLELY++A+ EIDAV
Sbjct: 303 QSLINKTVLEL-ETELSRLGKPIAHGTDSRVDPAIMERRSAISKRLELYRAAQSEIDAV 360
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 347 bits (890), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 194/494 (39%), Positives = 283/494 (57%), Gaps = 19/494 (3%)
Query: 4 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPR 63
M LI L+N++Q A + +G + LP LE+ VGRDFLPR
Sbjct: 26 MEDLIPLVNRLQDAFSAIGQNADLD------LPQIAVVGGQSAGKSSVLENFVGRDFLPR 79
Query: 64 GSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISN 123
GSGIVTRRPLVLQL T+YAEFLH KKFTDF VR EI ETDR+TG +K IS
Sbjct: 80 GSGIVTRRPLVLQL--VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISP 137
Query: 124 IPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPA 183
+PI L +YSP+V+NLTL+DLPG+TKV V QP I I +M+ +V K +C+ILA+SPA
Sbjct: 138 VPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPA 197
Query: 184 NQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNR 243
N D+A SDA+K+A+EVDP G+RT GV+TKLDLMD+GT+A +VLE + L+ ++G+VNR
Sbjct: 198 NSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNR 257
Query: 244 SQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSII 303
SQ DI+ D+ AA ER++F + P Y HLA +MG+ YL K+L+Q L IR +P +
Sbjct: 258 SQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR 317
Query: 304 ALINKNIDEINAELDRIGRPIGVDSGAQLYTILEMCRAFERVFKEHLDGG--------RA 355
+ + I E+D D + +L+M + F F++ ++G +
Sbjct: 318 NKLQSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELS 377
Query: 356 GGDRIYGVFDHQLPAALKKLPFDRHLSTRNVQKVVSEADGYQPHLIAPEQGYRRLIDGSI 415
GG RI +F + P L K+ FD R + + + L P+ + + +
Sbjct: 378 GGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDLAFEATVKKQV 437
Query: 416 SYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTLQSDIAAAATEALEKFRDESRKT 475
K P+ VD V L +RK +E+L+++P L+ ++ T + + +++
Sbjct: 438 QKLKEPSIKCVDMVVSELTSTIRKC---SEKLQQYPRLREEMERIVTTHIREREGRTKEQ 494
Query: 476 VLRLVDMESSYLTV 489
V+ L+D+E +Y+
Sbjct: 495 VMLLIDIELAYMNT 508
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 344 bits (883), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 192/494 (38%), Positives = 283/494 (57%), Gaps = 19/494 (3%)
Query: 4 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPR 63
M LI L+N++Q A + +G + LP LE+ VGRDFLPR
Sbjct: 3 MEDLIPLVNRLQDAFSAIGQNADLD------LPQIAVVGGQSAGKSSVLENFVGRDFLPR 56
Query: 64 GSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISN 123
GSGIVTRRPLVLQL T+YAEFLH KKFTDF VR EI ETDR+TG +K IS
Sbjct: 57 GSGIVTRRPLVLQL--VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISP 114
Query: 124 IPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPA 183
+PI L +YSP+V+NLTL+DLPG+TKV V QP I I +M+ +V K +C+ILA+SPA
Sbjct: 115 VPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPA 174
Query: 184 NQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNR 243
N D+A SDA+K+A+EVDP G+RT GV+TKLDLMD+GT+A +VLE + L+ ++G+VNR
Sbjct: 175 NSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNR 234
Query: 244 SQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSII 303
SQ DI+ D+ AA ER++F + P Y HLA +MG+ YL K+L+Q L IR +P +
Sbjct: 235 SQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR 294
Query: 304 ALINKNIDEINAELDRIGRPIGVDSGAQLYTILEMCRAFERVFKEHLDGG--------RA 355
+ + I E++ D + +L+M + F F++ ++G +
Sbjct: 295 NKLQSQLLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELS 354
Query: 356 GGDRIYGVFDHQLPAALKKLPFDRHLSTRNVQKVVSEADGYQPHLIAPEQGYRRLIDGSI 415
GG RI +F + P L K+ FD R + + A L P+ + ++ +
Sbjct: 355 GGARINRIFHERFPFELVKMEFDEKELRREISYAIKNAAAAATGLFTPDMAFETIVKKQV 414
Query: 416 SYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTLQSDIAAAATEALEKFRDESRKT 475
+ P VD V+ EL+ T++L+++P L+ ++ T + + +++
Sbjct: 415 KKIREPCLKCVD---MVISELISTVRQCTKKLQQYPRLREEMERIVTTHIREREGRTKEQ 471
Query: 476 VLRLVDMESSYLTV 489
V+ L+D+E +Y+
Sbjct: 472 VMLLIDIELAYMNT 485
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 300 bits (767), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/343 (47%), Positives = 219/343 (63%), Gaps = 16/343 (4%)
Query: 3 TMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLP 62
+M LI L+N++Q A + +G + LP LE+ VGRDFLP
Sbjct: 5 SMEDLIPLVNRLQDAFSAIGQNADLD------LPQIAVVGGQSAGKSSVLENFVGRDFLP 58
Query: 63 RGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQIS 122
RGSGIVTRRPLVLQL T+YAEFLH KKFTDF VR EI ETDR+TG +K IS
Sbjct: 59 RGSGIVTRRPLVLQL--VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGIS 116
Query: 123 NIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISP 182
+PI L +YSP+V+NLTL+DLPG+TKV V QP I I +M+ +V K +C+ILA+SP
Sbjct: 117 PVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSP 176
Query: 183 ANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVN 242
AN D+A SDA+K+A+EVDP G+RT GV+TKLDLMD+GT+A +VLE + L+ ++G+VN
Sbjct: 177 ANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVN 236
Query: 243 RSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSI 302
RSQ DI+ D+ AA ER++F + P Y HLA +MG+ YL K+L+Q L IR +P +
Sbjct: 237 RSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGL 296
Query: 303 -------IALINKNIDEI-NAELDRIGRPIGVDSGAQLYTILE 337
+ I K ++E N D+ G VD ++Y L+
Sbjct: 297 RNKLQSQLLSIEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALK 339
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 298 bits (764), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 154/299 (51%), Positives = 201/299 (67%), Gaps = 8/299 (2%)
Query: 4 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPR 63
M LI L+N++Q A + +G + LP LE+ VGRDFLPR
Sbjct: 1 MEDLIPLVNRLQDAFSAIGQNADLD------LPQIAVVGGQSAGKSSVLENFVGRDFLPR 54
Query: 64 GSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISN 123
GSGIVTRRPLVLQL T+YAEFLH KKFTDF VR EI ETDR+TG +K IS
Sbjct: 55 GSGIVTRRPLVLQL--VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISP 112
Query: 124 IPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPA 183
+PI L +YSP+V+NLTL+DLPG+TKV V QP I I +M+ +V K +C+ILA+SPA
Sbjct: 113 VPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPA 172
Query: 184 NQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNR 243
N D+A SDA+K+A+EVDP G+RT GV+TKLDLMD+GT+A +VLE + L+ ++G+VNR
Sbjct: 173 NSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNR 232
Query: 244 SQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSI 302
SQ DI+ D+ AA ER++F + P Y HLA +MG+ YL K+L+Q L IR +P +
Sbjct: 233 SQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGL 291
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|B Chain B, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|C Chain C, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|D Chain D, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
Length = 319
Score = 293 bits (751), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 154/299 (51%), Positives = 201/299 (67%), Gaps = 8/299 (2%)
Query: 4 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPR 63
M LI L+N++Q A + LG S LP LE+ VGRDFLPR
Sbjct: 19 MEELIPLVNRLQDAFSALGQ------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPR 72
Query: 64 GSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISN 123
GSGIVTRRPLVLQL ++ +YAEFLH KKFTDF VR EI ETDR+TG +K IS+
Sbjct: 73 GSGIVTRRPLVLQLITSKA--EYAEFLHCKGKKFTDFDEVRLEIEAETDRVTGMNKGISS 130
Query: 124 IPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPA 183
IPI L +YSP+V+NLTLIDLPG+TKV V QP I I M+ ++ + +C+ILA++PA
Sbjct: 131 IPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTPA 190
Query: 184 NQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNR 243
N D+A SDA+KLA+EVDP G RT GV+TKLDLMD+GT+A +VLE + L+ +VG+VNR
Sbjct: 191 NTDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGVVNR 250
Query: 244 SQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSI 302
SQ DI+ D+ AA ER++F + P Y H+A +MG+ +L K+L+Q L IR +P+
Sbjct: 251 SQKDIDGKKDIKAAMLAERKFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNF 309
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 287 bits (734), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 150/296 (50%), Positives = 196/296 (66%), Gaps = 8/296 (2%)
Query: 7 LIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSG 66
LI L+N++Q A + +G + LP LE+ VGRDFLPRGSG
Sbjct: 9 LIPLVNRLQDAFSAIGQNADLD------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG 62
Query: 67 IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPI 126
IVTRRPLVLQL T+YAEFLH KKFTDF VR EI ETDR+TG +K IS +PI
Sbjct: 63 IVTRRPLVLQL--VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPI 120
Query: 127 QLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD 186
L +YSP+V+NLTL+DLPG TKV V QP I I + + +V K +C+ILA+SPAN D
Sbjct: 121 NLRVYSPHVLNLTLVDLPGXTKVPVGDQPPDIEFQIRDXLXQFVTKENCLILAVSPANSD 180
Query: 187 IATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQA 246
+A SDA+K+A+EVDP G+RT GV+TKLDL D+GT+A +VLE + L+ ++G+VNRSQ
Sbjct: 181 LANSDALKVAKEVDPQGQRTIGVITKLDLXDEGTDARDVLENKLLPLRRGYIGVVNRSQK 240
Query: 247 DINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSI 302
DI+ D+ AA ER++F + P Y HLA + G+ YL K+L+Q L IR +P +
Sbjct: 241 DIDGKKDITAALAAERKFFLSHPSYRHLADRXGTPYLQKVLNQQLTNHIRDTLPGL 296
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 273 bits (699), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 147/317 (46%), Positives = 201/317 (63%), Gaps = 13/317 (4%)
Query: 7 LIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSG 66
LI +INK+Q LG + LP LE++VGRDFLPRGSG
Sbjct: 3 LIPVINKLQDVFNTLGSDPLD-------LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSG 55
Query: 67 IVTRRPLVLQLHQTEGGTD------YAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQ 120
IVTRRPL+LQL D + EFLH P F DF+ +R+EI +TDR+TGK+K
Sbjct: 56 IVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKG 115
Query: 121 ISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAI 180
IS PI L IYSP+VVNLTL+DLPG+TKV V QP I + I MV +Y++K + II+A+
Sbjct: 116 ISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAV 175
Query: 181 SPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGI 240
+PAN D+A SDA++LA+EVDP G+RT GV+TKLDLMDKGT+A+EVL GR L ++G+
Sbjct: 176 TPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGV 235
Query: 241 VNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIP 300
+NRSQ DI + + + E YF+ P Y +A++ G+ YL+K L++ L IR +P
Sbjct: 236 INRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLP 295
Query: 301 SIIALINKNIDEINAEL 317
+ ++K + ++ EL
Sbjct: 296 DLKVKVSKMLSDVQGEL 312
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 133/464 (28%), Positives = 227/464 (48%), Gaps = 28/464 (6%)
Query: 34 ALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQT------EGGTDYA 87
ALP LE++ G LPRGSGIVTR PLVL+L + G Y
Sbjct: 44 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQ 102
Query: 88 EFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLT 147
++ + +D + V KEI+ + I G+ IS+ I L I S +V +LTLIDLPG+T
Sbjct: 103 DY----EIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGIT 158
Query: 148 KVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTF 207
+VAV QP I I+ +++ Y+++ I L + P+N DIAT++A+ +A+EVDP G+RT
Sbjct: 159 RVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218
Query: 208 GVLTKLDLMDKGT--NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKEREYF 265
G+LTK DL+DKGT ++V+ + L+ ++ + R Q +I + + A ++E+ +F
Sbjct: 219 GILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFF 278
Query: 266 ETSPEYGHL--ASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRP 323
E P + L K LA+ L+ L I + +P + I + I EL + G
Sbjct: 279 ENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVD 338
Query: 324 IGVDSGAQLYTILEMCRAFERVFKEHLDGGRAGGDRIYGVFD------HQLPAALKKLPF 377
I D +++ +++ AF + + G G+ +F H+ ++
Sbjct: 339 IPEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQ 398
Query: 378 DRH-LSTRNVQKVVSEADGYQPHLIAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKEL 436
+ H + +R +QK ++A + + + ++ I + PA VD +H V ++
Sbjct: 399 EGHKILSRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKALEEPA---VDMLHTV-TDM 454
Query: 437 VRKSIAETEELKRFPTLQSDIAAAATEALEKFRDESRKTVLRLV 480
VR + + +K F ++ A +E R E + +L+
Sbjct: 455 VRLAFTDV-SIKNFEEF-FNLHRTAKSKIEDIRAEQEREGEKLI 496
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 165 bits (417), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 133/464 (28%), Positives = 227/464 (48%), Gaps = 28/464 (6%)
Query: 34 ALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQT------EGGTDYA 87
ALP LE++ G LPRGSGIVTR PLVL+L + G Y
Sbjct: 69 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQ 127
Query: 88 EFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLT 147
++ + +D + V KEI+ + I G+ IS+ I L I S +V +LTLIDLPG+T
Sbjct: 128 DY----EIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGIT 183
Query: 148 KVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTF 207
+VAV QP I I+ +++ Y+++ I L + P+N DIAT++A+ +A+EVDP G+RT
Sbjct: 184 RVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 243
Query: 208 GVLTKLDLMDKGT--NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKEREYF 265
G+LTK DL+DKGT ++V+ + L+ ++ + R Q +I + + A ++E+ +F
Sbjct: 244 GILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFF 303
Query: 266 ETSPEYGHL--ASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRP 323
E P + L K LA+ L+ L I + +P + I + I EL + G
Sbjct: 304 ENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVD 363
Query: 324 IGVDSGAQLYTILEMCRAFERVFKEHLDGGRAGGDRIYGVFD------HQLPAALKKLPF 377
I D +++ +++ AF + + G G+ +F H+ ++
Sbjct: 364 IPEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQ 423
Query: 378 DRH-LSTRNVQKVVSEADGYQPHLIAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKEL 436
+ H + +R +QK ++ G + + + ++ I + PA VD +H V ++
Sbjct: 424 EGHKILSRKIQKFENQYRGRELPGFVNYRTFETIVKQQIKALEEPA---VDMLHTV-TDM 479
Query: 437 VRKSIAETEELKRFPTLQSDIAAAATEALEKFRDESRKTVLRLV 480
VR + + +K F ++ A +E R E + +L+
Sbjct: 480 VRLAFTDV-SIKNFEEF-FNLHRTAKSKIEDIRAEQEREGEKLI 521
>pdb|1WDZ|A Chain A, Crystal Structure Of Rcb Domain Of Irsp53
pdb|1WDZ|B Chain B, Crystal Structure Of Rcb Domain Of Irsp53
Length = 242
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 17/187 (9%)
Query: 380 HLSTRNVQKVVSEADGYQPHL---IAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKEL 436
H T NV K + E + P L IA + Y + + G KG +A V +
Sbjct: 13 HRLTENVYKTIMEQ--FNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQ 70
Query: 437 VRKSIAETEELKRFPTLQSDIAAAATEALEKFRDESRKTVLRLVDMESSYLTVEFFRKLS 496
K + + L + + I E L+ F +E + + V+++S YL+ + +
Sbjct: 71 GSKELGDV--LFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQT 128
Query: 497 EQPERSASDKNASDKNAPDRN---APPPGPQNPERFSDYHFRRIG--SNVSGYI-GMVCD 550
EQ RS D A DK + G +NP+++SD + I SN G + V D
Sbjct: 129 EQ--RSKGD--ALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSD 184
Query: 551 TLKNSIP 557
K ++
Sbjct: 185 GYKTALT 191
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 40/87 (45%), Gaps = 20/87 (22%)
Query: 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERT------FGVLTKLDLM 216
E ++ YVEK II AI+P + A KLARE TGE +GVLT+ L
Sbjct: 395 EERMKEYVEKSIGIITAINP---HVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLN 451
Query: 217 DKGTNALEVLEGRSYRLQHPWVGIVNR 243
E+L Y + HP GI R
Sbjct: 452 -------EIL--NPYEMIHP--GIAGR 467
>pdb|1Y2O|A Chain A, Structure Of N-Terminal Domain Irsp53BAIAP2
pdb|1Y2O|B Chain B, Structure Of N-Terminal Domain Irsp53BAIAP2
Length = 250
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 17/188 (9%)
Query: 378 DRHLSTRNVQKVVSEADGYQPHL---IAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLK 434
+ H T NV K + E + P L IA + Y + + G KG +A V +
Sbjct: 8 EXHRLTENVYKTIXEQ--FNPSLRNFIAXGKNYEKALAGVTYAAKGYFDALVKXGELASE 65
Query: 435 ELVRKSIAETEELKRFPTLQSDIAAAATEALEKFRDESRKTVLRLVDMESSYLTVEFFRK 494
K + + L + + I E L+ F +E + + V+++S YL+ +
Sbjct: 66 SQGSKELGDV--LFQXAEVHRQIQNQLEEXLKSFHNELLTQLEQKVELDSRYLSAALKKY 123
Query: 495 LSEQPERSASDKNASDKNAPDRN---APPPGPQNPERFSDYHFRRIG--SNVSGYI-GMV 548
+EQ RS D A DK + G +NP+++SD + I SN G + V
Sbjct: 124 QTEQ--RSKGD--ALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYV 179
Query: 549 CDTLKNSI 556
D K ++
Sbjct: 180 SDGYKTAL 187
>pdb|2YKT|A Chain A, Crystal Structure Of The I-Bar Domain Of Irsp53 (Baiap2)
In Complex With An Ehec Derived Tir Peptide
Length = 253
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 17/186 (9%)
Query: 380 HLSTRNVQKVVSEADGYQPHL---IAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKEL 436
H T NV K + E + P L IA + Y + + G KG +A V +
Sbjct: 13 HRLTENVYKTIMEQ--FNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQ 70
Query: 437 VRKSIAETEELKRFPTLQSDIAAAATEALEKFRDESRKTVLRLVDMESSYLTVEFFRKLS 496
K + + L + + I E L+ F +E + + V+++S YL+ + +
Sbjct: 71 GSKELGDV--LFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQT 128
Query: 497 EQPERSASDKNASDKNAPDRN---APPPGPQNPERFSDYHFRRIG--SNVSGYI-GMVCD 550
EQ RS D A DK + G +NP+++SD + I SN G + V D
Sbjct: 129 EQ--RSKGD--ALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSD 184
Query: 551 TLKNSI 556
K ++
Sbjct: 185 GYKTAL 190
>pdb|2H85|A Chain A, Crystal Structure Of Nsp 15 From Sars
Length = 347
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 235 HPWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERV 294
H +G+ RSQ K D I + YF T + G +SK G + LL +E +
Sbjct: 251 HLMIGLAKRSQDSPLKLEDFIPMDSTVKNYFITDAQTG--SSKCGCSVIDLLLGDFVEII 308
Query: 295 IRQRIPSIIALINKNID 311
Q + I ++ ID
Sbjct: 309 KSQDLSVISKVVKVTID 325
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 75 LQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISD---ETDRITGKSKQISNIPIQLSIY 131
L LH T G D+ F H ++ A+ +I+ E DR ++ +S P+ L +
Sbjct: 111 LLLHHTLGNGDFTVF-HRMSSNISETTAMITDINTAPAEIDRCI-RTTYVSQRPVYLGL- 167
Query: 132 SPNVVNLT----LIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI 187
N+V+LT L+D P + PE+ E IEN+++ E + +ILA + ++
Sbjct: 168 PANLVDLTVPASLLDTP-IDLSLKPNDPEAEEEVIENVLQLIKEAKNPVILADACCSRHD 226
Query: 188 ATSDAIKL 195
A ++ KL
Sbjct: 227 AKAETKKL 234
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 380 HLSTRNVQKVVSEADGYQPHLIAPEQGYRRLID 412
HLST+ ++KVV E+ +LI E Y+R +D
Sbjct: 104 HLSTQIIKKVVFESRASDIYLIVEEGFYKRTLD 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,752,221
Number of Sequences: 62578
Number of extensions: 732966
Number of successful extensions: 1963
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1930
Number of HSP's gapped (non-prelim): 26
length of query: 625
length of database: 14,973,337
effective HSP length: 105
effective length of query: 520
effective length of database: 8,402,647
effective search space: 4369376440
effective search space used: 4369376440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)