Query 006928
Match_columns 625
No_of_seqs 346 out of 2938
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 16:29:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 1.2E-96 3E-101 815.6 48.0 615 1-625 1-656 (657)
2 smart00053 DYNc Dynamin, GTPas 100.0 7.9E-47 1.7E-51 372.2 25.8 239 4-250 1-239 (240)
3 PF01031 Dynamin_M: Dynamin ce 100.0 1.1E-44 2.3E-49 373.8 25.0 270 223-494 2-283 (295)
4 KOG0447 Dynamin-like GTP bindi 100.0 5.3E-30 1.2E-34 264.1 33.1 293 6-307 283-588 (980)
5 smart00302 GED Dynamin GTPase 99.9 6.2E-24 1.3E-28 178.4 12.3 89 532-622 4-92 (92)
6 COG1159 Era GTPase [General fu 99.9 2.1E-23 4.6E-28 205.7 12.2 234 34-333 5-242 (298)
7 PF00350 Dynamin_N: Dynamin fa 99.9 4.5E-22 9.7E-27 188.3 16.8 166 38-213 1-168 (168)
8 PF02212 GED: Dynamin GTPase e 99.9 8.1E-22 1.8E-26 166.2 11.5 89 532-622 4-92 (92)
9 TIGR00436 era GTP-binding prot 99.8 1.3E-18 2.8E-23 177.6 12.3 231 37-333 2-234 (270)
10 PRK00089 era GTPase Era; Revie 99.7 9.6E-18 2.1E-22 173.4 12.5 233 34-333 4-239 (292)
11 PRK15494 era GTPase Era; Provi 99.7 4.4E-17 9.6E-22 171.0 12.7 232 36-333 53-286 (339)
12 PRK09866 hypothetical protein; 99.7 1.3E-12 2.8E-17 141.7 43.3 198 36-245 70-335 (741)
13 PF02421 FeoB_N: Ferrous iron 99.7 1.2E-16 2.5E-21 147.3 7.8 146 37-250 2-151 (156)
14 COG1160 Predicted GTPases [Gen 99.7 6.4E-16 1.4E-20 161.2 13.3 157 36-258 4-163 (444)
15 KOG1423 Ras-like GTPase ERA [C 99.6 4.2E-16 9.1E-21 152.8 9.7 217 34-312 71-320 (379)
16 COG0486 ThdF Predicted GTPase 99.6 4.2E-14 9.2E-19 148.1 20.5 156 35-256 217-372 (454)
17 PRK12298 obgE GTPase CgtA; Rev 99.6 5.7E-14 1.2E-18 149.4 15.9 176 35-271 159-344 (390)
18 TIGR03156 GTP_HflX GTP-binding 99.5 2E-13 4.3E-18 143.7 17.7 126 34-218 188-316 (351)
19 COG0218 Predicted GTPase [Gene 99.5 1.7E-13 3.7E-18 128.9 13.5 128 34-220 23-152 (200)
20 PRK12299 obgE GTPase CgtA; Rev 99.5 1.5E-13 3.2E-18 143.5 14.4 126 34-219 157-287 (335)
21 PRK11058 GTPase HflX; Provisio 99.5 4.1E-13 8.8E-18 144.6 17.0 126 34-218 196-324 (426)
22 COG1084 Predicted GTPase [Gene 99.5 2.4E-13 5.3E-18 135.8 12.8 155 6-219 136-296 (346)
23 COG1160 Predicted GTPases [Gen 99.5 3.3E-13 7.1E-18 141.1 11.6 157 34-247 177-335 (444)
24 PRK05291 trmE tRNA modificatio 99.5 6.8E-12 1.5E-16 136.7 22.4 155 34-259 214-369 (449)
25 TIGR00450 mnmE_trmE_thdF tRNA 99.5 1.3E-11 2.7E-16 133.8 24.2 158 34-259 202-359 (442)
26 cd04163 Era Era subfamily. Er 99.4 1E-12 2.2E-17 122.9 13.0 123 35-218 3-126 (168)
27 cd01878 HflX HflX subfamily. 99.4 1.5E-12 3.3E-17 127.2 14.5 127 34-219 40-169 (204)
28 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 2.4E-12 5.3E-17 125.0 15.1 166 37-261 2-185 (196)
29 cd01887 IF2_eIF5B IF2/eIF5B (i 99.4 1.8E-12 3.9E-17 122.0 12.5 117 36-218 1-117 (168)
30 COG0370 FeoB Fe2+ transport sy 99.4 2.1E-12 4.5E-17 141.0 14.5 155 36-256 4-160 (653)
31 PRK00454 engB GTP-binding prot 99.4 1.7E-12 3.7E-17 125.7 12.5 125 34-219 23-151 (196)
32 cd01898 Obg Obg subfamily. Th 99.4 1.6E-12 3.5E-17 122.7 12.0 125 37-220 2-131 (170)
33 PF01926 MMR_HSR1: 50S ribosom 99.4 2.6E-12 5.6E-17 113.7 11.7 115 37-212 1-116 (116)
34 TIGR03598 GTPase_YsxC ribosome 99.4 2.2E-12 4.7E-17 123.4 12.1 123 34-218 17-144 (179)
35 PRK12296 obgE GTPase CgtA; Rev 99.4 1.8E-12 4E-17 140.3 12.4 125 34-218 158-299 (500)
36 PRK12297 obgE GTPase CgtA; Rev 99.4 4.4E-12 9.5E-17 135.8 15.0 123 35-216 158-287 (424)
37 TIGR02729 Obg_CgtA Obg family 99.4 3E-12 6.5E-17 133.6 12.9 126 34-218 156-288 (329)
38 cd01897 NOG NOG1 is a nucleola 99.4 5E-12 1.1E-16 119.2 13.4 25 36-60 1-25 (168)
39 PRK03003 GTP-binding protein D 99.4 3.8E-12 8.1E-17 140.1 14.3 158 34-256 37-195 (472)
40 TIGR03594 GTPase_EngA ribosome 99.4 1.1E-11 2.4E-16 135.3 17.0 125 34-216 171-296 (429)
41 cd01895 EngA2 EngA2 subfamily. 99.4 1.2E-11 2.5E-16 116.7 13.9 127 35-219 2-129 (174)
42 TIGR03594 GTPase_EngA ribosome 99.3 7.8E-12 1.7E-16 136.5 14.4 152 37-254 1-154 (429)
43 PRK00093 GTP-binding protein D 99.3 1.2E-11 2.5E-16 135.4 15.6 154 35-254 1-156 (435)
44 KOG1191 Mitochondrial GTPase [ 99.3 4E-11 8.6E-16 125.5 18.4 155 6-220 241-406 (531)
45 PRK03003 GTP-binding protein D 99.3 6.6E-12 1.4E-16 138.1 13.5 126 34-218 210-337 (472)
46 cd04112 Rab26 Rab26 subfamily. 99.3 1.1E-11 2.4E-16 119.9 13.4 111 136-264 50-167 (191)
47 cd01868 Rab11_like Rab11-like. 99.3 1.2E-11 2.6E-16 116.3 13.0 148 35-252 3-157 (165)
48 cd01866 Rab2 Rab2 subfamily. 99.3 1.1E-11 2.5E-16 117.1 12.5 152 35-252 4-158 (168)
49 PRK09518 bifunctional cytidyla 99.3 1.6E-11 3.4E-16 141.6 16.1 160 34-258 274-434 (712)
50 cd01867 Rab8_Rab10_Rab13_like 99.3 1.3E-11 2.7E-16 116.6 12.7 153 35-253 3-158 (167)
51 PRK00093 GTP-binding protein D 99.3 2.6E-11 5.7E-16 132.6 16.4 127 34-218 172-299 (435)
52 COG2262 HflX GTPases [General 99.3 2.4E-11 5.3E-16 125.3 14.8 130 33-220 190-321 (411)
53 cd01861 Rab6 Rab6 subfamily. 99.3 1.5E-11 3.3E-16 115.0 12.3 116 37-218 2-120 (161)
54 cd04171 SelB SelB subfamily. 99.3 1.4E-11 3.1E-16 115.3 12.1 68 135-218 50-119 (164)
55 cd01894 EngA1 EngA1 subfamily. 99.3 7.2E-12 1.6E-16 116.3 9.9 77 136-219 45-121 (157)
56 cd01865 Rab3 Rab3 subfamily. 99.3 1.8E-11 4E-16 115.2 12.8 103 136-253 50-156 (165)
57 cd04164 trmE TrmE (MnmE, ThdF, 99.3 3.9E-11 8.4E-16 111.3 14.6 120 37-219 3-123 (157)
58 cd00880 Era_like Era (E. coli 99.3 3E-11 6.6E-16 111.5 13.7 78 135-220 44-121 (163)
59 PRK04213 GTP-binding protein; 99.3 2.1E-11 4.5E-16 118.8 12.4 124 34-219 8-146 (201)
60 cd01881 Obg_like The Obg-like 99.3 8.5E-12 1.8E-16 118.3 9.4 80 135-220 43-137 (176)
61 smart00175 RAB Rab subfamily o 99.3 2.6E-11 5.7E-16 113.5 12.3 69 136-218 49-120 (164)
62 cd04142 RRP22 RRP22 subfamily. 99.3 2.9E-11 6.3E-16 117.6 12.9 157 37-251 2-165 (198)
63 PRK09554 feoB ferrous iron tra 99.3 2.2E-11 4.8E-16 139.8 13.7 160 35-256 3-164 (772)
64 KOG0448 Mitofusin 1 GTPase, in 99.3 9.7E-10 2.1E-14 119.0 25.1 171 34-226 108-284 (749)
65 cd04113 Rab4 Rab4 subfamily. 99.3 3.4E-11 7.4E-16 112.7 12.4 149 37-251 2-153 (161)
66 PRK09518 bifunctional cytidyla 99.3 7.4E-11 1.6E-15 136.0 17.6 126 34-218 449-576 (712)
67 cd04122 Rab14 Rab14 subfamily. 99.3 4.4E-11 9.6E-16 112.7 13.1 149 37-251 4-155 (166)
68 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.3 4.7E-11 1E-15 112.4 13.2 104 136-253 51-157 (166)
69 COG3596 Predicted GTPase [Gene 99.3 6.1E-11 1.3E-15 116.1 14.1 123 34-219 37-164 (296)
70 cd04136 Rap_like Rap-like subf 99.3 2.5E-11 5.4E-16 113.7 10.7 69 136-218 49-121 (163)
71 cd04157 Arl6 Arl6 subfamily. 99.3 5.3E-11 1.1E-15 111.3 12.9 70 135-218 44-119 (162)
72 cd01879 FeoB Ferrous iron tran 99.3 3E-11 6.6E-16 112.4 11.2 73 136-219 43-117 (158)
73 cd04145 M_R_Ras_like M-Ras/R-R 99.3 2.9E-11 6.4E-16 113.3 11.1 69 136-218 50-122 (164)
74 cd04119 RJL RJL (RabJ-Like) su 99.3 4.8E-11 1E-15 112.0 12.6 115 37-217 2-124 (168)
75 cd00154 Rab Rab family. Rab G 99.3 3.4E-11 7.3E-16 111.5 11.4 114 37-216 2-118 (159)
76 cd01862 Rab7 Rab7 subfamily. 99.3 4.4E-11 9.6E-16 113.0 12.2 115 37-217 2-123 (172)
77 cd04104 p47_IIGP_like p47 (47- 99.3 5.2E-11 1.1E-15 115.7 12.8 121 36-218 2-122 (197)
78 cd01853 Toc34_like Toc34-like 99.3 1E-10 2.2E-15 117.2 15.1 128 34-219 30-165 (249)
79 smart00173 RAS Ras subfamily o 99.2 2.7E-11 5.8E-16 113.7 10.0 103 136-252 48-154 (164)
80 cd01860 Rab5_related Rab5-rela 99.2 7.4E-11 1.6E-15 110.5 13.0 116 37-218 3-121 (163)
81 cd04101 RabL4 RabL4 (Rab-like4 99.2 9.8E-11 2.1E-15 109.9 13.8 69 136-219 52-123 (164)
82 cd04106 Rab23_lke Rab23-like s 99.2 5.8E-11 1.2E-15 111.1 12.0 70 136-219 51-122 (162)
83 cd01890 LepA LepA subfamily. 99.2 5.3E-11 1.1E-15 113.5 11.7 68 135-217 66-133 (179)
84 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.2 9.6E-11 2.1E-15 112.5 13.5 115 37-217 5-123 (183)
85 cd01864 Rab19 Rab19 subfamily. 99.2 9.5E-11 2.1E-15 110.3 13.1 70 136-219 52-124 (165)
86 cd04139 RalA_RalB RalA/RalB su 99.2 7.8E-11 1.7E-15 110.2 12.4 150 37-252 2-154 (164)
87 KOG1954 Endocytosis/signaling 99.2 4.9E-12 1.1E-16 127.0 4.3 169 33-219 56-227 (532)
88 cd04127 Rab27A Rab27a subfamil 99.2 7E-11 1.5E-15 112.8 12.1 69 136-218 63-135 (180)
89 cd04138 H_N_K_Ras_like H-Ras/N 99.2 6.7E-11 1.5E-15 110.3 11.8 102 136-251 49-153 (162)
90 COG0699 Predicted GTPases (dyn 99.2 2.7E-09 5.9E-14 120.1 27.0 486 85-617 2-542 (546)
91 cd01876 YihA_EngB The YihA (En 99.2 6E-11 1.3E-15 111.1 11.2 121 37-219 1-126 (170)
92 cd04175 Rap1 Rap1 subgroup. T 99.2 6.2E-11 1.3E-15 111.3 11.3 69 136-218 49-121 (164)
93 cd00881 GTP_translation_factor 99.2 9.3E-11 2E-15 112.5 12.6 69 135-218 61-129 (189)
94 TIGR00991 3a0901s02IAP34 GTP-b 99.2 1.5E-10 3.4E-15 117.5 14.2 139 12-218 22-168 (313)
95 cd04109 Rab28 Rab28 subfamily. 99.2 8.3E-11 1.8E-15 116.0 11.7 155 37-256 2-162 (215)
96 cd04107 Rab32_Rab38 Rab38/Rab3 99.2 8.5E-11 1.8E-15 114.6 11.3 68 136-217 50-124 (201)
97 cd04123 Rab21 Rab21 subfamily. 99.2 1.7E-10 3.6E-15 107.6 12.8 69 136-218 49-120 (162)
98 PRK15467 ethanolamine utilizat 99.2 1.2E-10 2.7E-15 108.9 11.6 104 140-258 41-145 (158)
99 cd04114 Rab30 Rab30 subfamily. 99.2 1.6E-10 3.4E-15 109.0 12.5 119 34-218 6-127 (169)
100 PF04548 AIG1: AIG1 family; I 99.2 5.6E-11 1.2E-15 116.8 9.5 126 37-220 2-133 (212)
101 cd04144 Ras2 Ras2 subfamily. 99.2 1.4E-10 3.1E-15 112.0 12.1 109 136-258 47-161 (190)
102 cd04156 ARLTS1 ARLTS1 subfamil 99.2 1.4E-10 3E-15 108.4 11.6 112 37-218 1-116 (160)
103 cd04124 RabL2 RabL2 subfamily. 99.2 1.4E-10 3.1E-15 108.8 11.3 114 37-217 2-118 (161)
104 cd04111 Rab39 Rab39 subfamily. 99.2 1.7E-10 3.7E-15 113.3 12.1 157 36-257 3-163 (211)
105 cd04120 Rab12 Rab12 subfamily. 99.2 2.4E-10 5.2E-15 111.3 12.9 117 37-218 2-120 (202)
106 cd04176 Rap2 Rap2 subgroup. T 99.2 9.2E-11 2E-15 110.0 9.6 69 137-218 50-121 (163)
107 cd04154 Arl2 Arl2 subfamily. 99.2 2.1E-10 4.5E-15 109.0 12.0 114 34-218 13-130 (173)
108 cd04110 Rab35 Rab35 subfamily. 99.2 1.4E-10 3E-15 112.9 11.0 158 35-258 6-165 (199)
109 PLN03118 Rab family protein; P 99.2 2.2E-10 4.8E-15 112.6 12.5 158 35-259 14-176 (211)
110 PF10662 PduV-EutP: Ethanolami 99.2 1.5E-10 3.2E-15 104.4 10.1 24 37-60 3-26 (143)
111 cd04160 Arfrp1 Arfrp1 subfamil 99.2 2.3E-10 4.9E-15 107.7 11.6 70 135-218 49-122 (167)
112 cd04125 RabA_like RabA-like su 99.2 4.1E-10 8.8E-15 108.5 13.6 109 136-258 49-160 (188)
113 cd00876 Ras Ras family. The R 99.2 2.8E-10 6.1E-15 105.9 12.0 115 37-218 1-119 (160)
114 cd04140 ARHI_like ARHI subfami 99.2 1.6E-10 3.6E-15 108.7 10.3 102 136-252 49-157 (165)
115 cd04161 Arl2l1_Arl13_like Arl2 99.2 3.9E-10 8.5E-15 106.5 12.8 70 136-219 43-116 (167)
116 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.2 4.2E-10 9.2E-15 106.9 13.0 147 37-254 4-158 (172)
117 cd01863 Rab18 Rab18 subfamily. 99.1 4.3E-10 9.3E-15 105.1 12.8 70 136-219 49-122 (161)
118 smart00178 SAR Sar1p-like memb 99.1 5.6E-10 1.2E-14 107.2 13.8 114 34-217 16-132 (184)
119 cd04116 Rab9 Rab9 subfamily. 99.1 4.8E-10 1E-14 105.9 13.0 118 35-217 5-128 (170)
120 cd04115 Rab33B_Rab33A Rab33B/R 99.1 3.3E-10 7.2E-15 107.2 11.9 144 36-244 3-150 (170)
121 cd04108 Rab36_Rab34 Rab34/Rab3 99.1 3.8E-10 8.3E-15 107.0 12.2 117 37-218 2-121 (170)
122 PLN03110 Rab GTPase; Provision 99.1 4.7E-10 1E-14 110.7 13.1 119 35-218 12-132 (216)
123 cd04159 Arl10_like Arl10-like 99.1 5.5E-10 1.2E-14 103.4 12.8 113 37-219 1-117 (159)
124 cd01893 Miro1 Miro1 subfamily. 99.1 4.9E-10 1.1E-14 105.6 12.1 114 37-219 2-119 (166)
125 cd04177 RSR1 RSR1 subgroup. R 99.1 3.4E-10 7.4E-15 106.9 10.8 71 136-219 49-122 (168)
126 cd04137 RheB Rheb (Ras Homolog 99.1 6E-10 1.3E-14 106.3 12.5 155 37-258 3-161 (180)
127 TIGR02528 EutP ethanolamine ut 99.1 3.6E-10 7.7E-15 103.5 10.5 24 37-60 2-25 (142)
128 cd04151 Arl1 Arl1 subfamily. 99.1 4E-10 8.7E-15 105.2 11.0 70 136-218 43-115 (158)
129 PTZ00369 Ras-like protein; Pro 99.1 3.9E-10 8.6E-15 108.8 11.2 69 136-217 53-124 (189)
130 cd01891 TypA_BipA TypA (tyrosi 99.1 7.7E-10 1.7E-14 107.2 13.2 69 135-218 64-132 (194)
131 PF05049 IIGP: Interferon-indu 99.1 2.6E-10 5.7E-15 118.9 10.5 133 6-215 16-153 (376)
132 cd00879 Sar1 Sar1 subfamily. 99.1 9.2E-10 2E-14 106.1 13.6 113 34-217 18-134 (190)
133 PRK09602 translation-associate 99.1 2.3E-09 5.1E-14 114.4 17.7 39 36-74 2-40 (396)
134 cd01850 CDC_Septin CDC/Septin. 99.1 7.6E-10 1.7E-14 113.0 13.4 136 37-218 6-158 (276)
135 cd04118 Rab24 Rab24 subfamily. 99.1 4E-10 8.7E-15 109.0 10.9 68 136-218 50-120 (193)
136 cd00878 Arf_Arl Arf (ADP-ribos 99.1 5.4E-10 1.2E-14 104.2 11.4 70 136-219 43-116 (158)
137 cd01896 DRG The developmentall 99.1 4.3E-10 9.3E-15 112.1 11.3 24 37-60 2-25 (233)
138 PLN03108 Rab family protein; P 99.1 9.4E-10 2E-14 108.0 13.4 118 35-218 6-126 (210)
139 cd04147 Ras_dva Ras-dva subfam 99.1 6E-10 1.3E-14 108.4 11.7 69 136-218 47-119 (198)
140 cd04162 Arl9_Arfrp2_like Arl9/ 99.1 8.3E-10 1.8E-14 104.0 12.3 112 37-218 1-114 (164)
141 cd04117 Rab15 Rab15 subfamily. 99.1 9.2E-10 2E-14 103.3 12.2 144 37-250 2-152 (161)
142 PF00009 GTP_EFTU: Elongation 99.1 1.6E-10 3.4E-15 111.5 7.0 131 35-216 3-135 (188)
143 cd04166 CysN_ATPS CysN_ATPS su 99.1 5.5E-10 1.2E-14 109.5 10.9 82 119-218 61-145 (208)
144 cd04158 ARD1 ARD1 subfamily. 99.1 5.7E-10 1.2E-14 105.6 10.6 69 136-218 43-115 (169)
145 cd04149 Arf6 Arf6 subfamily. 99.1 5.5E-10 1.2E-14 105.7 10.4 113 35-218 9-125 (168)
146 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.1 6.7E-10 1.5E-14 105.6 11.0 69 136-218 59-131 (174)
147 cd00157 Rho Rho (Ras homology) 99.1 3.5E-10 7.6E-15 106.7 8.7 116 37-219 2-120 (171)
148 cd04165 GTPBP1_like GTPBP1-lik 99.1 5.8E-10 1.2E-14 110.3 10.4 75 130-218 78-153 (224)
149 cd04121 Rab40 Rab40 subfamily. 99.1 1.2E-09 2.7E-14 105.2 12.1 103 136-257 55-164 (189)
150 KOG1489 Predicted GTP-binding 99.1 4E-10 8.8E-15 111.9 8.7 152 34-248 195-355 (366)
151 cd01886 EF-G Elongation factor 99.1 9.3E-10 2E-14 111.9 11.4 83 120-218 49-131 (270)
152 cd04146 RERG_RasL11_like RERG/ 99.1 6.7E-10 1.5E-14 104.4 9.6 70 136-218 47-121 (165)
153 TIGR00475 selB selenocysteine- 99.1 1.3E-09 2.8E-14 122.4 13.4 107 136-259 50-165 (581)
154 cd04132 Rho4_like Rho4-like su 99.1 1.5E-09 3.3E-14 104.3 12.2 115 37-218 2-120 (187)
155 cd01884 EF_Tu EF-Tu subfamily. 99.0 7.1E-10 1.5E-14 107.3 9.8 128 37-218 4-133 (195)
156 TIGR00491 aIF-2 translation in 99.0 2E-09 4.3E-14 120.1 14.7 134 33-217 2-135 (590)
157 CHL00189 infB translation init 99.0 1.3E-09 2.7E-14 123.7 13.2 122 32-218 241-362 (742)
158 smart00174 RHO Rho (Ras homolo 99.0 6.4E-10 1.4E-14 105.5 9.1 69 136-218 46-117 (174)
159 cd04148 RGK RGK subfamily. Th 99.0 2.7E-09 5.9E-14 105.6 13.8 109 136-260 50-163 (221)
160 PLN03071 GTP-binding nuclear p 99.0 9E-10 2E-14 108.9 10.2 106 136-258 62-170 (219)
161 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.0 1E-09 2.3E-14 101.6 9.4 121 34-219 21-144 (221)
162 cd01899 Ygr210 Ygr210 subfamil 99.0 5.1E-09 1.1E-13 108.5 15.8 109 38-182 1-109 (318)
163 cd01889 SelB_euk SelB subfamil 99.0 1.9E-09 4.1E-14 104.3 11.9 67 135-218 67-135 (192)
164 TIGR00487 IF-2 translation ini 99.0 2.1E-09 4.5E-14 120.2 13.4 118 32-217 84-201 (587)
165 PLN00223 ADP-ribosylation fact 99.0 4.1E-09 8.9E-14 101.0 13.4 69 136-218 61-133 (181)
166 TIGR00437 feoB ferrous iron tr 99.0 1.5E-09 3.3E-14 121.9 12.0 108 136-257 41-152 (591)
167 cd04155 Arl3 Arl3 subfamily. 99.0 3.3E-09 7.2E-14 100.4 12.6 114 34-218 13-130 (173)
168 PTZ00133 ADP-ribosylation fact 99.0 4.8E-09 1E-13 100.6 13.8 68 136-217 61-132 (182)
169 smart00177 ARF ARF-like small 99.0 2.6E-09 5.6E-14 101.7 11.8 69 136-218 57-129 (175)
170 PRK05306 infB translation init 99.0 1.8E-09 3.8E-14 123.6 12.2 117 32-217 287-403 (787)
171 cd04128 Spg1 Spg1p. Spg1p (se 99.0 3.1E-09 6.7E-14 101.9 12.0 67 136-217 49-118 (182)
172 cd04143 Rhes_like Rhes_like su 99.0 3.3E-09 7.2E-14 106.6 12.7 103 136-255 48-166 (247)
173 cd01892 Miro2 Miro2 subfamily. 99.0 1.7E-09 3.7E-14 102.4 10.0 119 35-218 4-123 (169)
174 cd04150 Arf1_5_like Arf1-Arf5- 99.0 2.7E-09 5.9E-14 99.9 11.0 70 135-218 43-116 (159)
175 cd00877 Ran Ran (Ras-related n 99.0 2.4E-09 5.2E-14 101.0 10.7 104 136-256 49-155 (166)
176 TIGR00231 small_GTP small GTP- 99.0 4.9E-09 1.1E-13 96.5 12.2 29 36-65 2-30 (161)
177 cd01874 Cdc42 Cdc42 subfamily. 99.0 2E-09 4.3E-14 102.5 9.5 115 37-218 3-120 (175)
178 TIGR00993 3a0901s04IAP86 chlor 99.0 5.1E-09 1.1E-13 114.5 13.6 125 36-218 119-251 (763)
179 cd00882 Ras_like_GTPase Ras-li 99.0 2.7E-09 5.8E-14 97.1 9.8 71 136-220 45-119 (157)
180 cd04169 RF3 RF3 subfamily. Pe 99.0 4.5E-09 9.7E-14 106.8 12.1 135 37-218 4-138 (267)
181 cd04168 TetM_like Tet(M)-like 99.0 2.5E-09 5.4E-14 106.8 9.7 69 135-218 63-131 (237)
182 cd04105 SR_beta Signal recogni 98.9 9.1E-09 2E-13 100.4 12.9 117 36-219 1-125 (203)
183 cd01888 eIF2_gamma eIF2-gamma 98.9 6.5E-09 1.4E-13 101.5 11.4 68 136-218 83-152 (203)
184 cd04126 Rab20 Rab20 subfamily. 98.9 5.7E-09 1.2E-13 102.9 11.0 69 136-217 44-114 (220)
185 cd01870 RhoA_like RhoA-like su 98.9 6.1E-09 1.3E-13 98.8 10.9 25 36-60 2-26 (175)
186 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.9 1E-08 2.2E-13 101.8 12.7 118 33-217 11-131 (232)
187 cd04130 Wrch_1 Wrch-1 subfamil 98.9 3.9E-09 8.4E-14 100.2 9.2 69 136-218 48-119 (173)
188 smart00176 RAN Ran (Ras-relate 98.9 5.6E-09 1.2E-13 101.5 10.3 107 136-259 44-153 (200)
189 cd04134 Rho3 Rho3 subfamily. 98.9 3.6E-09 7.7E-14 102.1 8.7 69 136-218 48-119 (189)
190 cd01885 EF2 EF2 (for archaea a 98.9 8.7E-09 1.9E-13 101.6 11.5 67 135-216 72-138 (222)
191 cd04135 Tc10 TC10 subfamily. 98.9 6.6E-09 1.4E-13 98.5 10.1 69 136-218 48-119 (174)
192 PRK10512 selenocysteinyl-tRNA- 98.9 7.7E-09 1.7E-13 116.5 12.2 108 133-257 48-163 (614)
193 cd04167 Snu114p Snu114p subfam 98.9 1E-08 2.2E-13 100.9 11.6 133 37-216 2-136 (213)
194 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.9 8.9E-09 1.9E-13 98.7 10.8 115 36-217 6-123 (182)
195 cd01871 Rac1_like Rac1-like su 98.9 1.6E-08 3.4E-13 96.3 12.2 69 136-218 49-120 (174)
196 cd01900 YchF YchF subfamily. 98.9 5.6E-09 1.2E-13 105.6 9.5 99 38-183 1-102 (274)
197 TIGR01393 lepA GTP-binding pro 98.9 9.3E-09 2E-13 115.6 12.0 132 35-217 3-136 (595)
198 cd04102 RabL3 RabL3 (Rab-like3 98.9 4E-08 8.6E-13 95.6 14.9 70 136-218 54-144 (202)
199 cd04170 EF-G_bact Elongation f 98.9 1.3E-08 2.9E-13 103.8 12.1 69 135-218 63-131 (268)
200 cd04133 Rop_like Rop subfamily 98.9 6.6E-09 1.4E-13 99.0 9.2 115 37-218 3-120 (176)
201 cd01875 RhoG RhoG subfamily. 98.9 2E-08 4.3E-13 97.1 12.5 116 36-218 4-122 (191)
202 PTZ00258 GTP-binding protein; 98.9 9.7E-09 2.1E-13 108.5 11.0 102 34-181 20-124 (390)
203 KOG0084 GTPase Rab1/YPT1, smal 98.9 1.9E-08 4.1E-13 93.8 10.7 120 34-219 8-130 (205)
204 CHL00071 tufA elongation facto 98.8 1.2E-08 2.6E-13 110.3 10.7 131 36-219 13-144 (409)
205 KOG0078 GTP-binding protein SE 98.8 1.8E-08 3.8E-13 95.3 10.0 153 33-250 10-164 (207)
206 PRK09601 GTP-binding protein Y 98.8 1.8E-08 3.9E-13 105.3 11.1 100 36-181 3-105 (364)
207 PRK04004 translation initiatio 98.8 2.5E-08 5.4E-13 111.8 12.9 67 136-217 71-137 (586)
208 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.8 3E-08 6.6E-13 97.9 11.9 114 37-218 3-120 (222)
209 cd04131 Rnd Rnd subfamily. Th 98.8 2.3E-08 4.9E-13 95.6 10.4 114 37-217 3-119 (178)
210 COG1163 DRG Predicted GTPase [ 98.8 7.8E-09 1.7E-13 103.4 7.1 92 35-187 63-154 (365)
211 COG0536 Obg Predicted GTPase [ 98.8 1.5E-08 3.3E-13 102.2 9.1 125 37-220 161-292 (369)
212 PRK05433 GTP-binding protein L 98.8 4E-08 8.6E-13 110.7 13.1 134 34-218 6-141 (600)
213 COG1100 GTPase SAR1 and relate 98.8 6.2E-08 1.3E-12 95.5 12.8 119 36-221 6-129 (219)
214 PF00071 Ras: Ras family; Int 98.8 2.2E-08 4.8E-13 93.6 9.1 144 37-250 1-151 (162)
215 PRK12317 elongation factor 1-a 98.8 4.9E-08 1.1E-12 106.3 12.6 80 120-217 69-153 (425)
216 KOG0092 GTPase Rab5/YPT51 and 98.8 1.2E-08 2.7E-13 94.6 6.3 155 37-258 7-165 (200)
217 PF00025 Arf: ADP-ribosylation 98.8 2.4E-08 5.3E-13 95.1 8.3 115 34-219 13-131 (175)
218 PF00735 Septin: Septin; Inte 98.7 3.1E-08 6.7E-13 101.1 9.2 139 37-220 6-159 (281)
219 KOG1490 GTP-binding protein CR 98.7 2.6E-08 5.7E-13 104.4 8.7 134 27-219 160-297 (620)
220 PLN03127 Elongation factor Tu; 98.7 4.6E-08 9.9E-13 106.4 10.7 131 35-218 61-192 (447)
221 TIGR00484 EF-G translation elo 98.7 6.2E-08 1.3E-12 111.7 12.3 134 34-218 9-142 (689)
222 KOG0095 GTPase Rab30, small G 98.7 4.8E-08 1E-12 86.2 8.1 120 35-219 7-128 (213)
223 PRK12736 elongation factor Tu; 98.7 4.9E-08 1.1E-12 105.1 10.1 130 36-218 13-143 (394)
224 TIGR02034 CysN sulfate adenyly 98.7 5.3E-08 1.2E-12 105.1 10.3 83 120-219 65-149 (406)
225 KOG2486 Predicted GTPase [Gene 98.7 5.6E-08 1.2E-12 95.3 9.1 128 34-219 135-264 (320)
226 TIGR03680 eif2g_arch translati 98.7 5.8E-08 1.3E-12 104.9 10.3 67 136-218 80-149 (406)
227 cd01883 EF1_alpha Eukaryotic e 98.7 1E-07 2.2E-12 94.2 11.2 82 119-217 61-151 (219)
228 COG4917 EutP Ethanolamine util 98.7 4.1E-08 8.8E-13 84.6 7.0 102 37-217 3-104 (148)
229 PRK12735 elongation factor Tu; 98.7 8.1E-08 1.8E-12 103.4 11.1 70 134-218 73-143 (396)
230 PRK05506 bifunctional sulfate 98.7 6.3E-08 1.4E-12 110.6 10.8 68 134-217 102-171 (632)
231 TIGR01394 TypA_BipA GTP-bindin 98.7 8.1E-08 1.7E-12 107.9 11.1 69 135-218 63-131 (594)
232 TIGR00485 EF-Tu translation el 98.7 7.8E-08 1.7E-12 103.6 10.5 130 36-218 13-143 (394)
233 PRK00741 prfC peptide chain re 98.7 1.3E-07 2.8E-12 104.8 12.4 138 34-218 9-146 (526)
234 PRK12739 elongation factor G; 98.7 8.6E-08 1.9E-12 110.4 11.3 134 34-218 7-140 (691)
235 PRK00007 elongation factor G; 98.7 5.3E-08 1.1E-12 112.1 9.3 135 34-219 9-143 (693)
236 PRK05124 cysN sulfate adenylyl 98.7 1.2E-07 2.7E-12 104.0 11.8 142 34-218 26-175 (474)
237 KOG0073 GTP-binding ADP-ribosy 98.7 3.3E-07 7.2E-12 82.7 11.9 155 36-261 17-179 (185)
238 PRK00049 elongation factor Tu; 98.7 8.5E-08 1.8E-12 103.2 9.8 130 36-218 13-143 (396)
239 PLN00023 GTP-binding protein; 98.7 1E-07 2.3E-12 97.7 9.8 69 136-218 83-166 (334)
240 KOG0075 GTP-binding ADP-ribosy 98.6 3.5E-07 7.5E-12 80.9 11.7 115 36-219 21-138 (186)
241 PLN03126 Elongation factor Tu; 98.6 1.3E-07 2.9E-12 103.4 11.2 130 36-218 82-212 (478)
242 PF08477 Miro: Miro-like prote 98.6 2.7E-08 5.8E-13 88.0 4.7 24 37-60 1-24 (119)
243 cd01882 BMS1 Bms1. Bms1 is an 98.6 6.8E-08 1.5E-12 95.8 7.9 70 132-219 79-149 (225)
244 cd01873 RhoBTB RhoBTB subfamil 98.6 1.3E-07 2.8E-12 91.7 9.7 66 136-217 66-134 (195)
245 cd04129 Rho2 Rho2 subfamily. 98.6 1.3E-07 2.9E-12 91.0 9.4 24 37-60 3-26 (187)
246 PRK10218 GTP-binding protein; 98.6 1.6E-07 3.5E-12 105.4 11.3 131 34-218 4-135 (607)
247 PRK09435 membrane ATPase/prote 98.6 5.4E-07 1.2E-11 93.7 14.4 24 35-58 56-79 (332)
248 TIGR02836 spore_IV_A stage IV 98.6 6.1E-07 1.3E-11 93.5 13.6 142 37-216 19-193 (492)
249 KOG0093 GTPase Rab3, small G p 98.6 2.2E-07 4.7E-12 82.1 8.4 118 37-219 23-142 (193)
250 COG2229 Predicted GTPase [Gene 98.6 1.1E-06 2.3E-11 81.5 13.1 131 33-227 8-147 (187)
251 TIGR00503 prfC peptide chain r 98.6 3.3E-07 7.2E-12 101.6 11.5 137 34-217 10-146 (527)
252 COG0532 InfB Translation initi 98.6 6.4E-07 1.4E-11 96.0 13.1 119 33-219 3-123 (509)
253 PTZ00132 GTP-binding nuclear p 98.6 8.4E-07 1.8E-11 87.4 13.2 97 136-251 58-159 (215)
254 TIGR00483 EF-1_alpha translati 98.6 3.4E-07 7.4E-12 99.8 11.4 82 120-217 70-155 (426)
255 cd04103 Centaurin_gamma Centau 98.6 3.4E-07 7.3E-12 85.7 9.8 24 37-60 2-25 (158)
256 TIGR00490 aEF-2 translation el 98.5 4E-07 8.7E-12 105.2 12.1 69 134-217 84-152 (720)
257 PF09439 SRPRB: Signal recogni 98.5 2.9E-07 6.2E-12 87.0 8.3 119 34-219 2-128 (181)
258 PRK04000 translation initiatio 98.5 4.3E-07 9.4E-12 98.1 10.7 22 37-58 11-32 (411)
259 KOG0410 Predicted GTP binding 98.5 2.5E-07 5.3E-12 92.5 7.4 128 33-218 176-309 (410)
260 cd01858 NGP_1 NGP-1. Autoanti 98.5 3E-07 6.6E-12 85.8 7.7 28 36-63 103-130 (157)
261 PRK13351 elongation factor G; 98.5 6.8E-07 1.5E-11 103.3 12.0 134 34-218 7-140 (687)
262 KOG1145 Mitochondrial translat 98.5 1.8E-06 3.9E-11 91.8 13.5 144 33-246 151-299 (683)
263 PLN00116 translation elongatio 98.5 1.2E-06 2.6E-11 102.8 13.5 67 135-216 97-163 (843)
264 PRK07560 elongation factor EF- 98.5 8.3E-07 1.8E-11 102.9 12.0 133 34-216 19-152 (731)
265 cd04178 Nucleostemin_like Nucl 98.4 6E-07 1.3E-11 85.0 8.2 30 35-64 117-146 (172)
266 PTZ00416 elongation factor 2; 98.4 1.1E-06 2.5E-11 102.8 12.1 66 136-216 92-157 (836)
267 PTZ00327 eukaryotic translatio 98.4 1.6E-06 3.4E-11 94.4 11.6 67 136-218 117-186 (460)
268 cd01849 YlqF_related_GTPase Yl 98.4 4.4E-07 9.4E-12 84.6 6.3 39 34-72 99-138 (155)
269 KOG2655 Septin family protein 98.4 1.6E-06 3.5E-11 89.6 10.5 83 136-220 79-175 (366)
270 COG5019 CDC3 Septin family pro 98.4 3.3E-06 7.2E-11 86.5 12.1 83 136-220 82-179 (373)
271 TIGR00750 lao LAO/AO transport 98.4 3E-05 6.6E-10 80.4 19.6 25 34-58 33-57 (300)
272 KOG0091 GTPase Rab39, small G 98.3 1.3E-06 2.8E-11 78.7 7.5 149 37-253 10-166 (213)
273 cd01855 YqeH YqeH. YqeH is an 98.3 1.1E-06 2.4E-11 84.7 7.8 25 36-60 128-152 (190)
274 KOG0080 GTPase Rab18, small G 98.3 1E-06 2.3E-11 79.1 6.8 115 35-216 11-130 (209)
275 COG0012 Predicted GTPase, prob 98.3 9.3E-07 2E-11 91.2 7.0 104 36-181 3-106 (372)
276 KOG0079 GTP-binding protein H- 98.3 9.7E-07 2.1E-11 78.1 6.0 120 34-219 7-128 (198)
277 TIGR01425 SRP54_euk signal rec 98.3 3.1E-06 6.8E-11 90.6 10.9 80 136-227 183-263 (429)
278 KOG1547 Septin CDC10 and relat 98.3 7.7E-06 1.7E-10 78.5 12.1 150 8-218 30-199 (336)
279 PRK11889 flhF flagellar biosyn 98.3 1.2E-05 2.6E-10 84.4 14.0 150 36-227 242-401 (436)
280 KOG0098 GTPase Rab2, small G p 98.3 6E-06 1.3E-10 76.4 10.3 120 35-219 6-127 (216)
281 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.6E-06 3.5E-11 79.4 6.4 24 37-60 85-108 (141)
282 KOG0070 GTP-binding ADP-ribosy 98.3 1.6E-06 3.4E-11 80.5 6.2 151 36-257 18-175 (181)
283 KOG0394 Ras-related GTPase [Ge 98.2 1.5E-06 3.3E-11 80.1 5.6 119 34-218 8-133 (210)
284 TIGR03596 GTPase_YlqF ribosome 98.2 3.6E-06 7.9E-11 86.2 9.0 30 35-64 118-147 (276)
285 PRK12740 elongation factor G; 98.2 4.7E-06 1E-10 96.2 10.7 69 135-218 59-127 (668)
286 PTZ00141 elongation factor 1- 98.2 6.9E-06 1.5E-10 89.6 11.4 65 134-215 83-157 (446)
287 PLN00043 elongation factor 1-a 98.2 6.6E-06 1.4E-10 89.7 11.1 70 134-216 83-158 (447)
288 PF00448 SRP54: SRP54-type pro 98.2 1.6E-06 3.4E-11 83.9 5.1 81 136-227 84-164 (196)
289 TIGR00092 GTP-binding protein 98.2 4.6E-06 1E-10 87.4 8.0 103 36-181 3-106 (368)
290 PRK13768 GTPase; Provisional 98.1 1.4E-05 3E-10 80.7 10.8 76 136-220 97-179 (253)
291 PRK09563 rbgA GTPase YlqF; Rev 98.1 5.4E-06 1.2E-10 85.4 7.9 29 35-63 121-149 (287)
292 cd01856 YlqF YlqF. Proteins o 98.1 9.8E-06 2.1E-10 76.8 8.9 26 35-60 115-140 (171)
293 KOG1707 Predicted Ras related/ 98.1 9E-06 1.9E-10 87.5 9.4 119 35-221 9-133 (625)
294 cd01851 GBP Guanylate-binding 98.1 9.2E-06 2E-10 80.4 8.7 32 34-66 6-39 (224)
295 KOG0087 GTPase Rab11/YPT3, sma 98.1 1.2E-05 2.6E-10 76.0 8.8 118 34-217 13-133 (222)
296 COG1161 Predicted GTPases [Gen 98.1 4.9E-06 1.1E-10 86.9 6.8 31 37-72 134-164 (322)
297 KOG1491 Predicted GTP-binding 98.1 4.7E-06 1E-10 84.1 6.3 101 34-180 19-122 (391)
298 PRK06731 flhF flagellar biosyn 98.1 2.9E-05 6.3E-10 78.6 12.1 151 35-227 75-235 (270)
299 PRK12726 flagellar biosynthesi 98.1 3.6E-05 7.8E-10 80.5 12.9 150 36-227 207-366 (407)
300 KOG1486 GTP-binding protein DR 98.1 4.1E-06 8.9E-11 80.9 5.4 24 36-59 63-86 (364)
301 KOG0395 Ras-related GTPase [Ge 98.1 9.9E-06 2.1E-10 78.3 8.2 140 35-245 3-150 (196)
302 PRK12289 GTPase RsgA; Reviewed 98.1 6.4E-06 1.4E-10 86.7 7.2 24 37-60 174-197 (352)
303 KOG1532 GTPase XAB1, interacts 98.1 2.5E-05 5.4E-10 76.6 10.5 152 34-219 18-197 (366)
304 TIGR00157 ribosome small subun 98.1 9.8E-06 2.1E-10 81.4 8.1 25 36-60 121-145 (245)
305 PRK14723 flhF flagellar biosyn 98.1 2.7E-05 5.8E-10 88.6 12.4 151 37-227 187-347 (767)
306 PRK14974 cell division protein 98.1 7.8E-06 1.7E-10 85.3 7.2 81 136-227 223-303 (336)
307 PRK14722 flhF flagellar biosyn 98.0 1.9E-05 4.1E-10 83.3 9.8 22 37-58 139-160 (374)
308 KOG0090 Signal recognition par 98.0 2E-05 4.3E-10 74.7 8.7 71 137-220 83-162 (238)
309 PRK12288 GTPase RsgA; Reviewed 98.0 1.6E-05 3.4E-10 83.7 8.7 24 37-60 207-230 (347)
310 PRK10416 signal recognition pa 98.0 4.2E-05 9.1E-10 79.6 11.5 84 135-227 196-283 (318)
311 cd03112 CobW_like The function 98.0 2.6E-05 5.6E-10 72.9 9.0 23 36-58 1-23 (158)
312 COG0480 FusA Translation elong 98.0 1.8E-05 3.8E-10 89.8 9.2 136 34-219 9-144 (697)
313 PRK14721 flhF flagellar biosyn 98.0 7.6E-05 1.7E-09 80.0 13.5 151 36-227 192-350 (420)
314 PRK12724 flagellar biosynthesi 98.0 3.5E-05 7.7E-10 81.9 10.6 83 135-227 299-383 (432)
315 COG5256 TEF1 Translation elong 98.0 7.2E-05 1.6E-09 78.0 12.3 83 120-219 70-161 (428)
316 PF03308 ArgK: ArgK protein; 98.0 2.5E-05 5.5E-10 77.1 8.5 25 34-58 28-52 (266)
317 PRK12727 flagellar biosynthesi 98.0 7.2E-05 1.6E-09 81.5 12.6 80 136-227 429-508 (559)
318 PRK05703 flhF flagellar biosyn 98.0 6.5E-05 1.4E-09 81.3 12.2 82 136-227 300-381 (424)
319 PF03193 DUF258: Protein of un 98.0 8E-06 1.7E-10 75.7 4.4 25 36-60 36-60 (161)
320 PRK12723 flagellar biosynthesi 97.9 9.1E-05 2E-09 78.8 12.5 152 36-227 175-336 (388)
321 PF04670 Gtr1_RagA: Gtr1/RagA 97.9 4E-05 8.8E-10 75.7 9.1 120 37-219 1-127 (232)
322 COG1419 FlhF Flagellar GTP-bin 97.9 9.7E-05 2.1E-09 77.5 12.2 159 36-238 204-371 (407)
323 PRK00771 signal recognition pa 97.9 0.00014 3.1E-09 78.6 13.4 80 136-227 176-256 (437)
324 cd03114 ArgK-like The function 97.9 0.00013 2.9E-09 67.2 11.3 21 38-58 2-22 (148)
325 TIGR03597 GTPase_YqeH ribosome 97.9 1.8E-05 3.9E-10 84.1 6.0 23 37-59 156-178 (360)
326 KOG3883 Ras family small GTPas 97.9 0.00016 3.5E-09 64.7 10.8 72 136-220 60-135 (198)
327 KOG0076 GTP-binding ADP-ribosy 97.9 2.1E-05 4.5E-10 72.1 5.3 112 135-259 68-186 (197)
328 PRK13796 GTPase YqeH; Provisio 97.9 1.4E-05 3.1E-10 84.9 5.1 23 37-59 162-184 (365)
329 cd01859 MJ1464 MJ1464. This f 97.9 6.3E-05 1.4E-09 70.0 8.7 26 35-60 101-126 (156)
330 KOG0086 GTPase Rab4, small G p 97.8 0.0001 2.2E-09 65.8 9.1 120 34-218 8-129 (214)
331 TIGR00064 ftsY signal recognit 97.8 0.00013 2.8E-09 74.4 10.7 82 136-227 155-241 (272)
332 KOG0081 GTPase Rab27, small G 97.8 2.8E-05 6.1E-10 69.8 5.0 100 136-250 67-171 (219)
333 PTZ00099 rab6; Provisional 97.8 6.1E-05 1.3E-09 71.7 7.6 115 135-263 28-145 (176)
334 cd03115 SRP The signal recogni 97.8 0.00015 3.2E-09 68.8 10.2 79 136-225 83-161 (173)
335 COG1162 Predicted GTPases [Gen 97.8 6.1E-05 1.3E-09 76.2 7.6 22 37-58 166-187 (301)
336 PF03029 ATP_bind_1: Conserved 97.8 2.5E-05 5.4E-10 77.9 4.9 35 40-80 1-35 (238)
337 KOG0097 GTPase Rab14, small G 97.8 0.00016 3.5E-09 63.5 9.0 119 35-219 11-132 (215)
338 KOG3859 Septins (P-loop GTPase 97.8 6.4E-05 1.4E-09 73.7 7.2 133 37-219 44-192 (406)
339 COG1703 ArgK Putative periplas 97.8 0.0015 3.2E-08 65.7 16.8 25 34-58 50-74 (323)
340 PRK10867 signal recognition pa 97.7 0.00018 4E-09 77.6 11.0 81 136-227 184-264 (433)
341 COG0050 TufB GTPases - transla 97.7 0.00027 5.9E-09 70.2 10.9 131 36-219 13-144 (394)
342 KOG1424 Predicted GTP-binding 97.7 2.7E-05 5.7E-10 82.8 4.1 33 35-72 314-346 (562)
343 KOG0074 GTP-binding ADP-ribosy 97.7 0.00014 3.1E-09 64.2 7.8 114 36-218 18-134 (185)
344 cd01854 YjeQ_engC YjeQ/EngC. 97.7 0.00013 2.8E-09 75.1 8.9 25 36-60 162-186 (287)
345 PRK00098 GTPase RsgA; Reviewed 97.7 0.00013 2.8E-09 75.6 8.8 23 37-59 166-188 (298)
346 KOG4252 GTP-binding protein [S 97.7 9.2E-05 2E-09 67.9 6.6 69 137-219 70-140 (246)
347 PRK14845 translation initiatio 97.7 0.00022 4.7E-09 84.3 11.5 68 135-217 525-592 (1049)
348 TIGR00959 ffh signal recogniti 97.6 0.00028 6E-09 76.2 10.5 81 136-227 183-263 (428)
349 KOG1144 Translation initiation 97.6 0.00036 7.8E-09 76.9 10.7 131 33-216 473-605 (1064)
350 TIGR00073 hypB hydrogenase acc 97.5 0.00029 6.2E-09 69.0 8.5 25 34-58 21-45 (207)
351 PRK06995 flhF flagellar biosyn 97.5 0.00053 1.2E-08 74.8 11.0 91 136-239 335-425 (484)
352 KOG0071 GTP-binding ADP-ribosy 97.5 0.0006 1.3E-08 60.3 8.7 126 35-230 17-147 (180)
353 KOG0462 Elongation factor-type 97.4 0.00037 8.1E-09 74.7 8.0 134 34-218 59-192 (650)
354 KOG0468 U5 snRNP-specific prot 97.4 0.00063 1.4E-08 74.2 9.6 133 35-216 128-262 (971)
355 COG3276 SelB Selenocysteine-sp 97.4 0.0007 1.5E-08 71.3 9.5 69 136-219 50-119 (447)
356 COG5257 GCD11 Translation init 97.4 0.00045 9.6E-09 69.6 7.1 42 37-80 12-53 (415)
357 TIGR00101 ureG urease accessor 97.3 0.0015 3.3E-08 63.4 10.3 22 37-58 3-24 (199)
358 KOG1487 GTP-binding protein DR 97.3 0.00026 5.7E-09 69.0 4.7 101 36-202 60-163 (358)
359 KOG2485 Conserved ATP/GTP bind 97.3 0.00032 7E-09 70.6 5.4 26 34-59 142-167 (335)
360 TIGR03348 VI_IcmF type VI secr 97.3 0.002 4.3E-08 78.8 13.3 57 6-64 82-138 (1169)
361 COG0541 Ffh Signal recognition 97.3 0.0037 8.1E-08 66.0 13.2 78 136-225 183-261 (451)
362 KOG0072 GTP-binding ADP-ribosy 97.2 0.00051 1.1E-08 61.0 5.4 108 134-256 60-175 (182)
363 COG4108 PrfC Peptide chain rel 97.2 0.0012 2.7E-08 69.1 8.9 137 36-219 13-149 (528)
364 COG3640 CooC CO dehydrogenase 97.2 0.004 8.6E-08 60.6 11.5 86 137-246 135-222 (255)
365 COG0481 LepA Membrane GTPase L 97.2 0.0008 1.7E-08 71.1 6.9 134 35-219 9-144 (603)
366 COG1217 TypA Predicted membran 97.1 0.0012 2.6E-08 69.7 7.6 71 135-220 67-137 (603)
367 COG5192 BMS1 GTP-binding prote 97.1 0.0017 3.6E-08 69.6 8.7 112 34-220 67-180 (1077)
368 KOG0077 Vesicle coat complex C 97.1 0.0045 9.8E-08 56.6 10.2 127 15-219 8-137 (193)
369 KOG0458 Elongation factor 1 al 97.1 0.0026 5.6E-08 69.1 10.1 150 34-221 176-333 (603)
370 KOG1143 Predicted translation 97.1 0.0014 3E-08 67.1 7.4 143 37-220 169-320 (591)
371 PF05879 RHD3: Root hair defec 97.1 0.62 1.4E-05 54.3 29.8 22 41-63 1-22 (742)
372 KOG2484 GTPase [General functi 97.1 0.00049 1.1E-08 71.3 3.9 31 35-65 252-282 (435)
373 KOG2203 GTP-binding protein [G 97.0 0.002 4.4E-08 69.0 7.6 28 33-60 35-62 (772)
374 KOG0088 GTPase Rab21, small G 96.9 0.0024 5.3E-08 57.6 6.8 70 135-218 61-133 (218)
375 PRK10463 hydrogenase nickel in 96.9 0.0065 1.4E-07 61.9 10.2 25 34-58 103-127 (290)
376 KOG0083 GTPase Rab26/Rab37, sm 96.8 0.00067 1.4E-08 59.2 1.7 70 136-218 47-118 (192)
377 KOG0393 Ras-related small GTPa 96.6 0.0014 3E-08 62.6 3.1 116 37-218 6-124 (198)
378 COG1136 SalX ABC-type antimicr 96.6 0.026 5.6E-07 55.4 11.8 55 159-214 147-203 (226)
379 COG2895 CysN GTPases - Sulfate 96.4 0.027 5.9E-07 57.8 11.0 149 34-221 5-157 (431)
380 KOG2423 Nucleolar GTPase [Gene 96.4 0.0033 7E-08 65.0 4.3 24 37-60 309-332 (572)
381 KOG0780 Signal recognition par 96.3 0.007 1.5E-07 62.7 6.1 77 134-223 182-260 (483)
382 PRK01889 GTPase RsgA; Reviewed 96.3 0.0077 1.7E-07 64.0 6.4 24 37-60 197-220 (356)
383 KOG2749 mRNA cleavage and poly 96.2 0.093 2E-06 54.1 13.6 41 34-80 102-142 (415)
384 KOG4181 Uncharacterized conser 96.2 0.025 5.3E-07 57.8 8.9 26 34-59 187-212 (491)
385 KOG0461 Selenocysteine-specifi 96.0 0.034 7.4E-07 56.7 9.3 65 136-220 70-139 (522)
386 PRK11537 putative GTP-binding 95.9 0.032 7E-07 58.2 8.8 25 34-58 3-27 (318)
387 KOG0467 Translation elongation 95.9 0.011 2.4E-07 66.0 5.5 129 34-215 8-136 (887)
388 COG1341 Predicted GTPase or GT 95.9 0.068 1.5E-06 56.3 11.0 25 34-58 72-96 (398)
389 COG1101 PhnK ABC-type uncharac 95.8 0.0081 1.8E-07 57.7 3.5 27 37-64 34-60 (263)
390 COG5258 GTPBP1 GTPase [General 95.8 0.012 2.7E-07 60.7 5.0 67 137-219 202-271 (527)
391 COG3840 ThiQ ABC-type thiamine 95.8 0.0082 1.8E-07 56.2 3.3 28 37-65 27-54 (231)
392 KOG0463 GTP-binding protein GP 95.7 0.013 2.7E-07 60.3 4.5 77 127-219 210-289 (641)
393 PF13555 AAA_29: P-loop contai 95.6 0.011 2.4E-07 45.4 3.1 22 37-58 25-46 (62)
394 TIGR03499 FlhF flagellar biosy 95.6 0.011 2.4E-07 60.7 3.8 22 37-58 196-217 (282)
395 cd00071 GMPK Guanosine monopho 95.5 0.012 2.6E-07 53.5 3.4 33 38-72 2-38 (137)
396 COG4988 CydD ABC-type transpor 95.4 0.079 1.7E-06 58.2 9.9 28 37-66 349-376 (559)
397 PRK13695 putative NTPase; Prov 95.4 0.054 1.2E-06 51.2 7.8 22 37-58 2-23 (174)
398 COG0552 FtsY Signal recognitio 95.4 0.077 1.7E-06 54.6 9.1 81 136-225 222-306 (340)
399 cd01859 MJ1464 MJ1464. This f 95.4 0.033 7.1E-07 51.6 6.0 55 162-218 2-56 (156)
400 COG3523 IcmF Type VI protein s 95.3 0.1 2.2E-06 62.7 11.1 27 33-60 123-149 (1188)
401 COG1121 ZnuC ABC-type Mn/Zn tr 95.3 0.13 2.8E-06 51.3 10.3 31 37-69 32-62 (254)
402 KOG0460 Mitochondrial translat 95.3 0.1 2.2E-06 53.4 9.5 130 37-219 56-186 (449)
403 KOG1534 Putative transcription 95.2 0.038 8.1E-07 52.8 5.7 22 37-58 5-26 (273)
404 KOG1533 Predicted GTPase [Gene 95.2 0.041 9E-07 53.4 5.9 20 38-57 5-24 (290)
405 TIGR02868 CydC thiol reductant 95.1 0.14 3.1E-06 57.6 11.2 22 37-58 363-384 (529)
406 TIGR03263 guanyl_kin guanylate 95.1 0.02 4.4E-07 54.3 3.7 22 37-58 3-24 (180)
407 PF00005 ABC_tran: ABC transpo 95.0 0.017 3.7E-07 52.1 2.9 23 37-59 13-35 (137)
408 cd03280 ABC_MutS2 MutS2 homolo 95.0 0.17 3.7E-06 49.0 9.9 24 33-56 24-49 (200)
409 COG1116 TauB ABC-type nitrate/ 95.0 0.021 4.5E-07 56.4 3.4 27 37-64 31-57 (248)
410 PF03205 MobB: Molybdopterin g 95.0 0.019 4E-07 52.4 2.9 23 36-58 1-23 (140)
411 cd01130 VirB11-like_ATPase Typ 94.9 0.02 4.3E-07 54.9 3.2 22 37-58 27-48 (186)
412 COG4107 PhnK ABC-type phosphon 94.9 0.022 4.8E-07 52.8 3.1 31 37-69 34-64 (258)
413 PF13521 AAA_28: AAA domain; P 94.8 0.015 3.3E-07 54.3 2.1 22 37-58 1-22 (163)
414 cd03243 ABC_MutS_homologs The 94.8 0.33 7.3E-06 47.1 11.4 24 37-60 31-54 (202)
415 PRK00300 gmk guanylate kinase; 94.8 0.024 5.2E-07 55.1 3.3 36 37-72 7-43 (205)
416 TIGR01360 aden_kin_iso1 adenyl 94.8 0.021 4.5E-07 54.5 2.9 26 34-59 2-30 (188)
417 cd01855 YqeH YqeH. YqeH is an 94.7 0.18 4E-06 48.3 9.4 56 160-219 22-77 (190)
418 COG0194 Gmk Guanylate kinase [ 94.7 0.022 4.8E-07 53.7 2.7 36 37-72 6-41 (191)
419 COG4559 ABC-type hemin transpo 94.7 0.03 6.5E-07 53.8 3.5 27 37-64 29-55 (259)
420 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.6 0.031 6.7E-07 51.2 3.3 23 37-59 28-50 (144)
421 COG4604 CeuD ABC-type enteroch 94.5 0.11 2.4E-06 49.4 6.7 33 38-72 30-62 (252)
422 cd03225 ABC_cobalt_CbiO_domain 94.5 0.035 7.7E-07 54.2 3.7 28 37-66 29-56 (211)
423 PRK11174 cysteine/glutathione 94.4 0.32 7E-06 55.5 12.0 25 37-63 378-402 (588)
424 cd03261 ABC_Org_Solvent_Resist 94.4 0.036 7.7E-07 55.2 3.6 22 37-58 28-49 (235)
425 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.4 0.033 7.2E-07 54.7 3.4 22 37-58 32-53 (218)
426 PRK01889 GTPase RsgA; Reviewed 94.4 0.042 9.1E-07 58.4 4.3 48 170-218 110-157 (356)
427 TIGR01166 cbiO cobalt transpor 94.4 0.035 7.6E-07 53.3 3.4 23 37-59 20-42 (190)
428 KOG3886 GTP-binding protein [S 94.4 0.074 1.6E-06 51.6 5.4 50 171-221 80-134 (295)
429 cd03264 ABC_drug_resistance_li 94.3 0.035 7.7E-07 54.2 3.4 29 36-66 26-54 (211)
430 PRK14737 gmk guanylate kinase; 94.3 0.042 9E-07 52.7 3.8 37 36-72 5-42 (186)
431 COG0488 Uup ATPase components 94.3 0.29 6.4E-06 54.5 10.9 35 36-72 30-64 (530)
432 COG0410 LivF ABC-type branched 94.3 0.038 8.3E-07 53.8 3.4 22 37-58 31-52 (237)
433 TIGR02475 CobW cobalamin biosy 94.3 0.65 1.4E-05 49.0 12.9 25 34-58 3-27 (341)
434 KOG0464 Elongation factor G [T 94.3 0.02 4.3E-07 59.5 1.5 135 34-219 36-170 (753)
435 cd03222 ABC_RNaseL_inhibitor T 94.3 0.039 8.5E-07 52.4 3.4 23 37-59 27-49 (177)
436 TIGR03796 NHPM_micro_ABC1 NHPM 94.3 0.26 5.7E-06 57.6 11.0 51 159-212 620-670 (710)
437 PRK13851 type IV secretion sys 94.2 0.035 7.7E-07 58.4 3.3 32 36-69 163-194 (344)
438 cd03265 ABC_DrrA DrrA is the A 94.2 0.039 8.4E-07 54.4 3.4 22 37-58 28-49 (220)
439 cd03224 ABC_TM1139_LivF_branch 94.2 0.043 9.4E-07 54.0 3.7 23 37-59 28-50 (222)
440 cd03263 ABC_subfamily_A The AB 94.2 0.041 8.9E-07 54.1 3.5 23 37-59 30-52 (220)
441 PRK13541 cytochrome c biogenes 94.2 0.044 9.6E-07 52.9 3.6 23 37-59 28-50 (195)
442 cd03215 ABC_Carb_Monos_II This 94.1 0.046 1E-06 52.2 3.7 23 37-59 28-50 (182)
443 TIGR02673 FtsE cell division A 94.1 0.042 9.1E-07 53.8 3.5 23 37-59 30-52 (214)
444 cd03218 ABC_YhbG The ABC trans 94.1 0.044 9.6E-07 54.4 3.7 23 37-59 28-50 (232)
445 cd03226 ABC_cobalt_CbiO_domain 94.1 0.045 9.7E-07 53.3 3.6 23 37-59 28-50 (205)
446 cd03269 ABC_putative_ATPase Th 94.1 0.042 9.2E-07 53.7 3.4 22 37-58 28-49 (210)
447 TIGR00960 3a0501s02 Type II (G 94.1 0.042 9.1E-07 53.9 3.4 23 37-59 31-53 (216)
448 cd03259 ABC_Carb_Solutes_like 94.1 0.046 9.9E-07 53.5 3.6 22 37-58 28-49 (213)
449 KOG0061 Transporter, ABC super 94.1 0.41 8.8E-06 54.7 11.7 23 37-59 58-80 (613)
450 cd03229 ABC_Class3 This class 94.1 0.048 1E-06 51.8 3.6 22 37-58 28-49 (178)
451 cd03258 ABC_MetN_methionine_tr 94.0 0.048 1E-06 54.2 3.7 28 37-66 33-60 (233)
452 cd00267 ABC_ATPase ABC (ATP-bi 94.0 0.051 1.1E-06 50.4 3.6 31 36-68 26-56 (157)
453 KOG0057 Mitochondrial Fe/S clu 94.0 0.18 3.9E-06 55.0 8.1 58 159-218 492-551 (591)
454 PRK11629 lolD lipoprotein tran 94.0 0.044 9.6E-07 54.5 3.4 22 37-58 37-58 (233)
455 cd02019 NK Nucleoside/nucleoti 94.0 0.048 1E-06 43.1 2.9 21 38-58 2-22 (69)
456 PRK13657 cyclic beta-1,2-gluca 94.0 0.21 4.6E-06 56.9 9.3 23 37-59 363-385 (588)
457 COG0411 LivG ABC-type branched 94.0 0.016 3.4E-07 56.9 0.1 26 37-63 32-57 (250)
458 PF13207 AAA_17: AAA domain; P 94.0 0.04 8.7E-07 48.4 2.7 22 37-58 1-22 (121)
459 cd03293 ABC_NrtD_SsuB_transpor 94.0 0.047 1E-06 53.8 3.4 23 37-59 32-54 (220)
460 cd01858 NGP_1 NGP-1. Autoanti 94.0 0.076 1.6E-06 49.3 4.6 52 166-219 2-55 (157)
461 cd03254 ABCC_Glucan_exporter_l 93.9 0.051 1.1E-06 53.8 3.7 23 37-59 31-53 (229)
462 PRK13651 cobalt transporter AT 93.9 0.048 1E-06 56.7 3.6 29 37-67 35-63 (305)
463 TIGR02315 ABC_phnC phosphonate 93.9 0.046 1E-06 54.7 3.4 23 37-59 30-52 (243)
464 PF13191 AAA_16: AAA ATPase do 93.9 0.052 1.1E-06 51.4 3.6 25 34-58 23-47 (185)
465 TIGR03596 GTPase_YlqF ribosome 93.9 0.17 3.7E-06 51.7 7.6 52 163-218 12-63 (276)
466 cd03266 ABC_NatA_sodium_export 93.9 0.048 1E-06 53.6 3.4 22 37-58 33-54 (218)
467 cd03262 ABC_HisP_GlnQ_permease 93.9 0.05 1.1E-06 53.2 3.5 22 37-58 28-49 (213)
468 cd03292 ABC_FtsE_transporter F 93.9 0.051 1.1E-06 53.2 3.6 22 37-58 29-50 (214)
469 COG1120 FepC ABC-type cobalami 93.9 0.05 1.1E-06 54.5 3.4 22 37-58 30-51 (258)
470 cd03216 ABC_Carb_Monos_I This 93.9 0.053 1.1E-06 50.8 3.5 23 37-59 28-50 (163)
471 TIGR00157 ribosome small subun 93.9 0.038 8.2E-07 55.5 2.6 60 160-219 24-83 (245)
472 PRK11160 cysteine/glutathione 93.9 0.25 5.4E-06 56.2 9.5 22 37-58 368-389 (574)
473 TIGR03608 L_ocin_972_ABC putat 93.8 0.055 1.2E-06 52.6 3.6 23 37-59 26-48 (206)
474 cd03369 ABCC_NFT1 Domain 2 of 93.8 0.054 1.2E-06 52.8 3.6 30 37-68 36-65 (207)
475 PRK13540 cytochrome c biogenes 93.8 0.056 1.2E-06 52.4 3.6 23 37-59 29-51 (200)
476 cd03236 ABC_RNaseL_inhibitor_d 93.8 0.055 1.2E-06 54.7 3.7 30 37-68 28-57 (255)
477 PRK15177 Vi polysaccharide exp 93.8 0.053 1.2E-06 53.2 3.5 30 37-68 15-44 (213)
478 cd03231 ABC_CcmA_heme_exporter 93.8 0.058 1.3E-06 52.4 3.7 28 37-66 28-55 (201)
479 PRK13543 cytochrome c biogenes 93.8 0.055 1.2E-06 53.1 3.6 28 37-66 39-66 (214)
480 cd03219 ABC_Mj1267_LivG_branch 93.8 0.055 1.2E-06 53.9 3.6 22 37-58 28-49 (236)
481 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.8 0.054 1.2E-06 54.0 3.5 28 37-66 31-58 (238)
482 cd03256 ABC_PhnC_transporter A 93.8 0.053 1.2E-06 54.1 3.4 23 37-59 29-51 (241)
483 PHA02518 ParA-like protein; Pr 93.7 0.54 1.2E-05 45.6 10.5 38 135-187 76-113 (211)
484 cd03230 ABC_DR_subfamily_A Thi 93.7 0.062 1.3E-06 50.8 3.7 23 37-59 28-50 (173)
485 PRK10751 molybdopterin-guanine 93.7 0.046 9.9E-07 51.6 2.7 25 34-58 5-29 (173)
486 cd03268 ABC_BcrA_bacitracin_re 93.7 0.055 1.2E-06 52.8 3.4 23 37-59 28-50 (208)
487 PRK14250 phosphate ABC transpo 93.7 0.059 1.3E-06 53.9 3.7 22 37-58 31-52 (241)
488 cd03235 ABC_Metallic_Cations A 93.7 0.056 1.2E-06 52.9 3.4 23 37-59 27-49 (213)
489 cd03301 ABC_MalK_N The N-termi 93.7 0.06 1.3E-06 52.7 3.6 22 37-58 28-49 (213)
490 COG1129 MglA ABC-type sugar tr 93.7 0.32 7E-06 53.2 9.4 148 37-216 36-208 (500)
491 COG4619 ABC-type uncharacteriz 93.7 0.24 5.2E-06 46.0 7.1 23 37-59 31-53 (223)
492 PRK10895 lipopolysaccharide AB 93.7 0.061 1.3E-06 53.8 3.7 22 37-58 31-52 (241)
493 cd03260 ABC_PstB_phosphate_tra 93.7 0.05 1.1E-06 53.8 3.0 23 37-59 28-50 (227)
494 cd03257 ABC_NikE_OppD_transpor 93.7 0.062 1.3E-06 53.1 3.7 23 37-59 33-55 (228)
495 TIGR03797 NHPM_micro_ABC2 NHPM 93.6 0.42 9.1E-06 55.6 11.1 22 37-58 481-502 (686)
496 TIGR02211 LolD_lipo_ex lipopro 93.6 0.063 1.4E-06 52.8 3.7 23 37-59 33-55 (221)
497 cd03253 ABCC_ATM1_transporter 93.6 0.061 1.3E-06 53.5 3.6 28 37-66 29-56 (236)
498 PRK11124 artP arginine transpo 93.6 0.061 1.3E-06 53.8 3.6 23 37-59 30-52 (242)
499 cd03223 ABCD_peroxisomal_ALDP 93.6 0.068 1.5E-06 50.2 3.7 22 37-58 29-50 (166)
500 cd01857 HSR1_MMR1 HSR1/MMR1. 93.6 0.09 1.9E-06 47.9 4.4 52 165-218 4-57 (141)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=1.2e-96 Score=815.56 Aligned_cols=615 Identities=42% Similarity=0.598 Sum_probs=547.8
Q ss_pred CchhhhhHHHHHHHHHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeec
Q 006928 1 MATMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQT 80 (625)
Q Consensus 1 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~ 80 (625)
|..|+.+++++|++||+|..+|.. .++.||+|+|||+||+||||++|+|+|.+|+|||.|+|||+|++++|.+.
T Consensus 1 ~~~~~~li~~vn~lqd~~~~l~~~------~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~ 74 (657)
T KOG0446|consen 1 RGLMRLLIPLSNPLQDKLEILGSS------SFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIV 74 (657)
T ss_pred CchhhhccccchHHHHHHHHhcCC------CcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccc
Confidence 567999999999999999999932 34799999999999999999999999999999999999999999999998
Q ss_pred CCC-Ccceeec-cCCCCccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccH
Q 006928 81 EGG-TDYAEFL-HAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESI 158 (625)
Q Consensus 81 ~~~-~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~ 158 (625)
..+ .+|++|. |.++..++||.+++++|+.+++++.|.++++|+.+|.+++++|+++++|+||+||+++++.++||+++
T Consensus 75 ~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di 154 (657)
T KOG0446|consen 75 AGGDEEEASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDI 154 (657)
T ss_pred cCCcccchhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccH
Confidence 766 8999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeE
Q 006928 159 VEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWV 238 (625)
Q Consensus 159 ~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~ 238 (625)
..++++|++.|++.+++|||+|++||.|+++++++++++++||.|.|||||+||+|++++|++..+++.|..++++.||+
T Consensus 155 ~~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g~v 234 (657)
T KOG0446|consen 155 EEEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVGYV 234 (657)
T ss_pred HHHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCcccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCChhhhhccCCHHHHHHHHHhhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 006928 239 GIVNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELD 318 (625)
Q Consensus 239 ~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~eL~ 318 (625)
+|+||++++++...+...+...|..||..++.|..+.+++|+++|+..|...|..||++++|.+...|+..+.+.+.++.
T Consensus 235 ~vvnR~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~ 314 (657)
T KOG0446|consen 235 GVVNRSQSIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDELN 314 (657)
T ss_pred eeeccchhhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCchhHHHHHHHHHHHHHHHHHHhhcCC---C-----CCCchhHhHHhhhhHHHhccCCccccCchhhHHHHH
Q 006928 319 RIGRPIGVDSGAQLYTILEMCRAFERVFKEHLDGG---R-----AGGDRIYGVFDHQLPAALKKLPFDRHLSTRNVQKVV 390 (625)
Q Consensus 319 ~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~---~-----~~g~~i~~~f~~~f~~~~~~~~~~~~~~~~~i~~~i 390 (625)
++|. ..+.......++.++..|+..+...+.|. + .||+|++++|++.|...+.++++.+.++..+|++++
T Consensus 315 ~~g~--~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i 392 (657)
T KOG0446|consen 315 RIGA--VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLV 392 (657)
T ss_pred Hhcc--cCCccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHH
Confidence 9996 22222334457777788888887788776 2 588999999999999999999999999999999999
Q ss_pred HhhccCCCCCCCchhHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 006928 391 SEADGYQPHLIAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTLQSDIAAAATEALEKFRD 470 (625)
Q Consensus 391 ~~~~G~~p~~~~pe~af~~li~~~i~~l~~Ps~~~v~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~~~~~l~~~~~ 470 (625)
+|++|++|++|.|+.+|+.++++||+.+++|+++||+.|++++.+++++++..+ ++.|||.|+.++..++.+.++++++
T Consensus 393 ~~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~-~l~rfp~l~~~~~~~~~~~~~~~~~ 471 (657)
T KOG0446|consen 393 SEASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRAT-ELKRFPVLYSELVEIASSLIAEGLD 471 (657)
T ss_pred HhccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999998753 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccH---HHhhhhh---ccccc--------------ccc--CC-CC----CCCCCCCCCC-CCCC
Q 006928 471 ESRKTVLRLVDMESSYLTV---EFFRKLS---EQPER--------------SAS--DK-NA----SDKNAPDRNA-PPPG 522 (625)
Q Consensus 471 ~a~~~i~~li~~E~~yint---~~~~~~~---~~~~~--------------~~~--~~-~~----~~~~~~~~~~-~~~~ 522 (625)
+++++|.++++||.+|+|| ||++... +.... ... .. .. .......... +++.
T Consensus 472 ~t~~~v~~~i~~e~~yinT~h~df~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (657)
T KOG0446|consen 472 ETKKAVKNLIDLEQSYLNTDHPDFRSLTDSALSSVTSPSIAAMKLISAQLLKEELGECNSALKAIKNAVGSIRLDPSDIV 551 (657)
T ss_pred HHHHHHHHHHHHHHHHhcCcChhhhhhHHHHHHHhhcccccccccccccccccccccccchhhhhcchhhhhhhcccchh
Confidence 9999999999999999987 4544221 11110 000 00 00 0000000000 0000
Q ss_pred CC---CCCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCCChHHH
Q 006928 523 PQ---NPERFSDYHFRRIGSNVSGYIGMVCDTLKNSIPKAVVYCQVLAAKRSLLNQFYAHVGRQEKERLGKMLDEDPQLM 599 (625)
Q Consensus 523 ~~---~~~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lV~~~~~~l~~~L~~~L~~~~~~~~~~ll~E~~~i~ 599 (625)
.. ........+...|..++.+||+||+++++|+|||+|||+||+.+++.|+.+|+..||.. .+.+++||+|+|.++
T Consensus 552 ~~~~~~~~~~~~~~~~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~~-~~~~~~ll~E~~~i~ 630 (657)
T KOG0446|consen 552 LSRALVLKKRECKETEEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYAG-DEQLESLLKEDPRIK 630 (657)
T ss_pred hhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHccCHHHH
Confidence 00 01111223677899999999999999999999999999999999999999999999992 346999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC
Q 006928 600 DRRATLAKRLELYKSARDEIDAVAWK 625 (625)
Q Consensus 600 ~~R~~l~~~l~~L~~A~~~l~~~~~~ 625 (625)
.+|+.|++++++|++|+.++..+.|+
T Consensus 631 ~~R~~~~~~l~~L~~a~~ii~~~~~~ 656 (657)
T KOG0446|consen 631 RRRELQQKRLLALQKALSILATVAQA 656 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998874
No 2
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=7.9e-47 Score=372.19 Aligned_cols=239 Identities=62% Similarity=0.976 Sum_probs=224.5
Q ss_pred hhhhHHHHHHHHHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCC
Q 006928 4 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG 83 (625)
Q Consensus 4 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~ 83 (625)
||.|++++|+++++++.+|... ++++|+|+|||+||+||||+||+|+|..++|++.|.|||||+++++++. .
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~------~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~--~ 72 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEK------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINS--S 72 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCC------CCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCC--C
Confidence 7899999999999999999643 2699999999999999999999999999899999999999999999874 5
Q ss_pred CcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHH
Q 006928 84 TDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIE 163 (625)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~ 163 (625)
++|+++.+.+++.+.+++++.+.|+++++.+.|.+++||+++|.++|++|++++++||||||+...+..+|+.++.+.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~ 152 (240)
T smart00053 73 TEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIK 152 (240)
T ss_pred CcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHH
Confidence 78999999999999999999999999999999989999999999999999999999999999998777777788899999
Q ss_pred HHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeC
Q 006928 164 NMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNR 243 (625)
Q Consensus 164 ~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~ 243 (625)
+++..|++++++|||+|++++.|+.+++++++++.+++.+.|||+|+||+|..++++++.++++|+.+++++||++|+||
T Consensus 153 ~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~v~nr 232 (240)
T smart00053 153 DMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGVVNR 232 (240)
T ss_pred HHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Chhhhhc
Q 006928 244 SQADINK 250 (625)
Q Consensus 244 s~~~~~~ 250 (625)
|++|++.
T Consensus 233 ~~~d~~~ 239 (240)
T smart00053 233 SQKDIEG 239 (240)
T ss_pred ChHHhhc
Confidence 9998753
No 3
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=1.1e-44 Score=373.83 Aligned_cols=270 Identities=31% Similarity=0.536 Sum_probs=241.9
Q ss_pred HHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHHHHHHhhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHH
Q 006928 223 LEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSI 302 (625)
Q Consensus 223 ~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~ 302 (625)
.+++.|+.++|++||++|+|||++|++...+..+++..|..||.++++|+...+++|+++|+.+|+++|.+||+++||.+
T Consensus 2 ~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l 81 (295)
T PF01031_consen 2 MDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSL 81 (295)
T ss_dssp HHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHH
Confidence 68899999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCC---------CCchhHhHHhhhhHHHhc
Q 006928 303 IALINKNIDEINAELDRIGRPIGVDSGAQLYTILEMCRAFERVFKEHLDGGRA---------GGDRIYGVFDHQLPAALK 373 (625)
Q Consensus 303 ~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~---------~g~~i~~~f~~~f~~~~~ 373 (625)
+..|+..+.+++.+|..||++++.+.+++..+|++++++|++.+.++++|.|. +|+++.++|++.|...+.
T Consensus 82 ~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~ 161 (295)
T PF01031_consen 82 KSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLE 161 (295)
T ss_dssp HHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhh
Confidence 99999999999999999999988677788889999999999999999999986 479999999999999999
Q ss_pred cCCccccCchhhHHHHHHhhccCCCCCCCchhHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhhH
Q 006928 374 KLPFDRHLSTRNVQKVVSEADGYQPHLIAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTL 453 (625)
Q Consensus 374 ~~~~~~~~~~~~i~~~i~~~~G~~p~~~~pe~af~~li~~~i~~l~~Ps~~~v~~V~~~l~~~v~~~~~~~~~~~rfp~L 453 (625)
+.++...+++++|+++|++++|+++++|+|+.+|+.||+++|+.|++||.+|++.|++++.+++.+++. .+|.+||+|
T Consensus 162 ~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~--~~~~~fp~L 239 (295)
T PF01031_consen 162 KIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLE--KEFERFPNL 239 (295)
T ss_dssp HTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHTTSHHH
T ss_pred hhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcc--hhcCCchHH
Confidence 888888889999999999999999999999999999999999999999999999999999999999876 489999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH---HHhhh
Q 006928 454 QSDIAAAATEALEKFRDESRKTVLRLVDMESSYLTV---EFFRK 494 (625)
Q Consensus 454 ~~~i~~~~~~~l~~~~~~a~~~i~~li~~E~~yint---~~~~~ 494 (625)
++++.+++.++++++..+|+++|+++|+||++|+|| +|...
T Consensus 240 ~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T~~~~f~~~ 283 (295)
T PF01031_consen 240 KEAIKEAVQQLLEECREPAKEMIENLIDMELSYINTQHPDFLGE 283 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTSTT--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHH
Confidence 999999999999999999999999999999999988 45554
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.98 E-value=5.3e-30 Score=264.10 Aligned_cols=293 Identities=28% Similarity=0.445 Sum_probs=230.0
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEeecCCCC
Q 006928 6 SLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGT 84 (625)
Q Consensus 6 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~ 84 (625)
+||.+....-|+++.-... . +..-.||+|||||+|||||+|+||.+....+||||+| +.||.|..+.|..+ +-
T Consensus 283 SLIDMYSEVLD~Ls~YD~s---Y-nt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEG--Py 356 (980)
T KOG0447|consen 283 SLIDMYSEVLDVLSDYDAS---Y-NTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEG--PH 356 (980)
T ss_pred HHHHHHHHHHHHHhccccc---c-cccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccC--cc
Confidence 5666666666665544321 1 2225899999999999999999999999999999998 69999998887543 22
Q ss_pred cceeeccCCC----CccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHH
Q 006928 85 DYAEFLHAPR----KKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVE 160 (625)
Q Consensus 85 ~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~ 160 (625)
..+.|..... .+..|+.+++.+++-.+......++.+|+.+|.+.+.||+.+.+++||+||++...+.+...+..+
T Consensus 357 HVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd 436 (980)
T KOG0447|consen 357 HVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKE 436 (980)
T ss_pred hhhhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchH
Confidence 3344433322 234688999999988777666678999999999999999999999999999999888888788888
Q ss_pred HHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc----ccHHHHHhCcccccC-C
Q 006928 161 DIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG----TNALEVLEGRSYRLQ-H 235 (625)
Q Consensus 161 ~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~----~~~~~~l~~~~~~l~-~ 235 (625)
.|-.|.+.|+++|++||||+-+.+.|...+-.-.+..+.||.|.|||+|+||.|+..+. ..+..+++|+.+|.+ +
T Consensus 437 ~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKAL 516 (980)
T KOG0447|consen 437 TIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKAL 516 (980)
T ss_pred HHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhc
Confidence 99999999999999999999999999988888889999999999999999999998764 246889999888765 7
Q ss_pred CeEEEEeCChhhhhccCCHHHHHHHHHhhhccCCCCCc---cccccChHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006928 236 PWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYGH---LASKMGSEYLAKLLSQHLERVIRQRIPSIIALIN 307 (625)
Q Consensus 236 g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~---~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~ 307 (625)
||++|+.-.+. ..-++..-+.-|++||.+...+.. .+..+.+.+|.-.++.-++..+++.+........
T Consensus 517 GYfaVVTGrGn---ssdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaDaFk 588 (980)
T KOG0447|consen 517 GYFAVVTGKGN---SSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQADSFK 588 (980)
T ss_pred ceeEEEecCCC---cchhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998754321 111233345667889988655543 1367788888888888888888887765544433
No 5
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.91 E-value=6.2e-24 Score=178.35 Aligned_cols=89 Identities=40% Similarity=0.597 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCCChHHHHHHHHHHHHHHH
Q 006928 532 YHFRRIGSNVSGYIGMVCDTLKNSIPKAVVYCQVLAAKRSLLNQFYAHVGRQEKERLGKMLDEDPQLMDRRATLAKRLEL 611 (625)
Q Consensus 532 ~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lV~~~~~~l~~~L~~~L~~~~~~~~~~ll~E~~~i~~~R~~l~~~l~~ 611 (625)
.++++|+.++.|||+||+|+++|+|||+||||||+.+++.||.+|++.||+++ .+++||+|||+|++||+.|++++++
T Consensus 4 ~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~~--~~~~LL~E~~~i~~kR~~~~~~l~~ 81 (92)
T smart00302 4 SELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKEE--LLDELLEEDPEIASKRKELKKRLEL 81 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCcc--cHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999975 4999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q 006928 612 YKSARDEIDAV 622 (625)
Q Consensus 612 L~~A~~~l~~~ 622 (625)
|++|+++|++|
T Consensus 82 L~~A~~~l~~v 92 (92)
T smart00302 82 LKKARQIIAAV 92 (92)
T ss_pred HHHHHHHHhcC
Confidence 99999999876
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.90 E-value=2.1e-23 Score=205.71 Aligned_cols=234 Identities=23% Similarity=0.359 Sum_probs=174.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|++||.||+|||||+|+|+|.++ .++|+.| | +| +.+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki-----sIvS~k~---Q--TT------------------------------R~~ 44 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKI-----SIVSPKP---Q--TT------------------------------RNR 44 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCce-----EeecCCc---c--hh------------------------------hhh
Confidence 566899999999999999999999998 9999999 3 33 456
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
+.| |...+..+++||||||+...... +.+.+.+.+.+.++++|. ||+|++++..+...+..
T Consensus 45 I~G-------------I~t~~~~QiIfvDTPGih~pk~~-----l~~~m~~~a~~sl~dvDl-ilfvvd~~~~~~~~d~~ 105 (298)
T COG1159 45 IRG-------------IVTTDNAQIIFVDTPGIHKPKHA-----LGELMNKAARSALKDVDL-ILFVVDADEGWGPGDEF 105 (298)
T ss_pred eeE-------------EEEcCCceEEEEeCCCCCCcchH-----HHHHHHHHHHHHhccCcE-EEEEEeccccCCccHHH
Confidence 777 77778899999999999987444 788888999999999996 55577787777776655
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChh---hhhccCCHHHHHHHHHhhhccCCC
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQA---DINKNVDMIAARRKEREYFETSPE 270 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~---~~~~~~~~~~~~~~e~~~f~~~~~ 270 (625)
++..+.....|.|+++||+|...+......+.. ......+|..+++.|+. ++..+.......+.|.++|+....
T Consensus 106 -il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~--~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~ 182 (298)
T COG1159 106 -ILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIA--FLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQ 182 (298)
T ss_pred -HHHHHhhcCCCeEEEEEccccCCcHHHHHHHHH--HHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhh
Confidence 556666566899999999999988664444444 34556777788888874 344444545555555555544433
Q ss_pred CCccccccChHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHH
Q 006928 271 YGHLASKMGSEYLA-KLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPIGVDSGAQLY 333 (625)
Q Consensus 271 ~~~~~~~~g~~~L~-~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~ 333 (625)
.++ ....++. +.++|.++...+++||+......+++...+..+-.+...+.+++++|..
T Consensus 183 itD----~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~Ver~sQK~ 242 (298)
T COG1159 183 ITD----RPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIYVERESQKG 242 (298)
T ss_pred ccC----ChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEEEecCCccc
Confidence 333 3334444 9999999999999999998877766666556666777667777666654
No 7
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.88 E-value=4.5e-22 Score=188.33 Aligned_cols=166 Identities=36% Similarity=0.504 Sum_probs=133.6
Q ss_pred EEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCC--cceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 38 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGT--DYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
|+|+|.+|||||||||+|+|.+++|.+.++||++|+.+.....+... .+..........+.++.++.+.+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 78999999999999999999999999999999999999976654432 1112222235667889999999988877777
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
+....++...+.+....+...+++||||||+......+ .+++.+|+.++|. +++|.+++.++...+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~---------~~~~~~~~~~~d~-vi~V~~~~~~~~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH---------TEITEEYLPKADV-VIFVVDANQDLTESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT---------SHHHHHHHSTTEE-EEEEEETTSTGGGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhh---------HHHHHHhhccCCE-EEEEeccCcccchHHHHHH
Confidence 66778888899999999999999999999998743331 3789999988885 5557788888988888889
Q ss_pred HHHhCCCCCceEEEeccC
Q 006928 196 AREVDPTGERTFGVLTKL 213 (625)
Q Consensus 196 ~~~~d~~~~rti~VltK~ 213 (625)
.+..++...++|+|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 999999999999999995
No 8
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.87 E-value=8.1e-22 Score=166.20 Aligned_cols=89 Identities=26% Similarity=0.436 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCCChHHHHHHHHHHHHHHH
Q 006928 532 YHFRRIGSNVSGYIGMVCDTLKNSIPKAVVYCQVLAAKRSLLNQFYAHVGRQEKERLGKMLDEDPQLMDRRATLAKRLEL 611 (625)
Q Consensus 532 ~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lV~~~~~~l~~~L~~~L~~~~~~~~~~ll~E~~~i~~~R~~l~~~l~~ 611 (625)
.++++|++++.|||+||+|||+|+|||+|+||||+++.+.|+.+|+..||.++. +++||+|||+|+++|+.|++++++
T Consensus 4 ~~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~~--~~~Ll~Ed~~i~~kR~~l~~~~~~ 81 (92)
T PF02212_consen 4 REVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEED--LEELLQEDPEIAEKREELKKKLER 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG--CCCCT--GHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchHH--HHHHHCCCHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999864 999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q 006928 612 YKSARDEIDAV 622 (625)
Q Consensus 612 L~~A~~~l~~~ 622 (625)
|++|+++|++|
T Consensus 82 L~~A~~~L~~~ 92 (92)
T PF02212_consen 82 LKKAQQILSEV 92 (92)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 99999999876
No 9
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.77 E-value=1.3e-18 Score=177.56 Aligned_cols=231 Identities=17% Similarity=0.187 Sum_probs=135.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+++|.+|||||||+|+|+|.++ .+++..|...+ ..+.|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~-----~~vs~~~~TTr-----------------------------------~~i~~ 41 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI-----SITSPKAQTTR-----------------------------------NRISG 41 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE-----eecCCCCCccc-----------------------------------CcEEE
Confidence 699999999999999999999986 44555551111 00111
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~ 196 (625)
+...+..++.|+||||+..... .+.+.+.+.+.++++++|.+++++ +++...... ..+.
T Consensus 42 -------------i~~~~~~qii~vDTPG~~~~~~-----~l~~~~~~~~~~~l~~aDvvl~Vv-D~~~~~~~~--~~i~ 100 (270)
T TIGR00436 42 -------------IHTTGASQIIFIDTPGFHEKKH-----SLNRLMMKEARSAIGGVDLILFVV-DSDQWNGDG--EFVL 100 (270)
T ss_pred -------------EEEcCCcEEEEEECcCCCCCcc-----hHHHHHHHHHHHHHhhCCEEEEEE-ECCCCCchH--HHHH
Confidence 2223345689999999876422 244555666778899999877755 444332221 2244
Q ss_pred HHhCCCCCceEEEeccCcccCccccHHHHHhCcccccC-CCeEEEEeCChhhhhccCCHHHHHHHHHhhhccCCCCCccc
Q 006928 197 REVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQ-HPWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYGHLA 275 (625)
Q Consensus 197 ~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~ 275 (625)
..+...+.|+++|+||+|+..+.. ..+.+........ ..++.+......+++.+.+.+.....+.++++......+
T Consensus 101 ~~l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~-- 177 (270)
T TIGR00436 101 TKLQNLKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTD-- 177 (270)
T ss_pred HHHHhcCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCC--
Confidence 445556789999999999975422 2222111000111 134555555555665555555444444333332222222
Q ss_pred cccCh-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHH
Q 006928 276 SKMGS-EYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPIGVDSGAQLY 333 (625)
Q Consensus 276 ~~~g~-~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~ 333 (625)
... ...++.+++.++.++++++||......+.+...+...-.+...+.+.+++|..
T Consensus 178 --~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~v~~~s~k~ 234 (270)
T TIGR00436 178 --QPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVERESQKK 234 (270)
T ss_pred --CCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEEECcCCcee
Confidence 223 34559999999999999999998877766654332222344444444444443
No 10
>PRK00089 era GTPase Era; Reviewed
Probab=99.74 E-value=9.6e-18 Score=173.36 Aligned_cols=233 Identities=22% Similarity=0.334 Sum_probs=137.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|.+|||||||+|+|+|.++ .+++..|...+ ..
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~-----~~vs~~~~tt~-----------------------------------~~ 43 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKI-----SIVSPKPQTTR-----------------------------------HR 43 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCce-----eecCCCCCccc-----------------------------------cc
Confidence 456799999999999999999999987 44555551111 11
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
+.| +...+..+++|+||||+...... +.+.+...+..++.++|++++++ +++..+...+ .
T Consensus 44 i~~-------------i~~~~~~qi~~iDTPG~~~~~~~-----l~~~~~~~~~~~~~~~D~il~vv-d~~~~~~~~~-~ 103 (292)
T PRK00089 44 IRG-------------IVTEDDAQIIFVDTPGIHKPKRA-----LNRAMNKAAWSSLKDVDLVLFVV-DADEKIGPGD-E 103 (292)
T ss_pred EEE-------------EEEcCCceEEEEECCCCCCchhH-----HHHHHHHHHHHHHhcCCEEEEEE-eCCCCCChhH-H
Confidence 112 33333468999999998764422 45556667778889999877755 5554444333 3
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCCh---hhhhccCCHHHHHHHHHhhhccCCC
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQ---ADINKNVDMIAARRKEREYFETSPE 270 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~---~~~~~~~~~~~~~~~e~~~f~~~~~ 270 (625)
.++..+...+.|+++|+||+|+..........+. .+....++..+++.|+ .++..+.+.+.....+.++++....
T Consensus 104 ~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~--~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~ 181 (292)
T PRK00089 104 FILEKLKKVKTPVILVLNKIDLVKDKEELLPLLE--ELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQ 181 (292)
T ss_pred HHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHH--HHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCC
Confidence 3555555557899999999999844332222222 1111223444455554 4444444444333333222222221
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHH
Q 006928 271 YGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPIGVDSGAQLY 333 (625)
Q Consensus 271 ~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~ 333 (625)
.++ .-......+.+++.++.++++++||......+.+.+. ....+...+.+..++|..
T Consensus 182 ~td---~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~--~~~~i~~~i~v~~~~~k~ 239 (292)
T PRK00089 182 ITD---RPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEER--GLVRIEATIYVERDSQKG 239 (292)
T ss_pred CCC---CCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC--CeEEEEEEEEEccCCcee
Confidence 222 2222344588999999999999999987766666542 222344444455444433
No 11
>PRK15494 era GTPase Era; Provisional
Probab=99.71 E-value=4.4e-17 Score=171.01 Aligned_cols=232 Identities=17% Similarity=0.256 Sum_probs=143.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
..|++||.+|+|||||+|+|+|..+ .+++..|...+ +...
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~-----~ivs~k~~tTr-----------------------------------~~~~ 92 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKL-----SIVTPKVQTTR-----------------------------------SIIT 92 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCce-----eeccCCCCCcc-----------------------------------CcEE
Confidence 3899999999999999999999876 33444441000 0011
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
| +...+..++.||||||+...... +...+.+.+..++..+|++++++ ++...+...+. .+
T Consensus 93 ~-------------~~~~~~~qi~~~DTpG~~~~~~~-----l~~~~~r~~~~~l~~aDvil~Vv-D~~~s~~~~~~-~i 152 (339)
T PRK15494 93 G-------------IITLKDTQVILYDTPGIFEPKGS-----LEKAMVRCAWSSLHSADLVLLII-DSLKSFDDITH-NI 152 (339)
T ss_pred E-------------EEEeCCeEEEEEECCCcCCCccc-----HHHHHHHHHHHHhhhCCEEEEEE-ECCCCCCHHHH-HH
Confidence 1 11122357899999998643221 44445555667789999877765 45444444332 24
Q ss_pred HHHhCCCCCceEEEeccCcccCccc-cHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHHHHHHhhhccCCCCCcc
Q 006928 196 AREVDPTGERTFGVLTKLDLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYGHL 274 (625)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~ 274 (625)
+..+...+.+.|+|+||+|+.+... +..+.+.. ......++.+...+..+++++++.+...+.|.++++....+++.
T Consensus 153 l~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~--~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~ 230 (339)
T PRK15494 153 LDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTE--NHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDL 230 (339)
T ss_pred HHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHh--cCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4444445678899999999865421 12222211 11112355666666677777777777777776666655544443
Q ss_pred ccccChHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHH
Q 006928 275 ASKMGSEYL-AKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPIGVDSGAQLY 333 (625)
Q Consensus 275 ~~~~g~~~L-~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~ 333 (625)
...++ .+.+++.++.++++++||......+.+.+.+.....+...+.+++++|..
T Consensus 231 ----~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~v~~~sqk~ 286 (339)
T PRK15494 231 ----PMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSRESYKT 286 (339)
T ss_pred ----CHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEEECCCCcee
Confidence 33444 59999999999999999999887777765432233354555555555543
No 12
>PRK09866 hypothetical protein; Provisional
Probab=99.69 E-value=1.3e-12 Score=141.73 Aligned_cols=198 Identities=19% Similarity=0.285 Sum_probs=111.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceee------cc-----CCC----------
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEF------LH-----APR---------- 94 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~------~~-----~~~---------- 94 (625)
|.++|+|..|+|||||+|+|+|..++|.+...+|.+|+.++ .+++.....-. .. .|.
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~--~~pg~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl 147 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIR--HTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHL 147 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEE--ecCCcCceeeecCCccchHHHHHHhhHHHHHhhhhHH
Confidence 89999999999999999999999999999999999999766 34332222111 00 000
Q ss_pred ----CccCChHHHHHHHHHHH----------------------hhhh---CCCCcccc-------ccEEEEEecCC----
Q 006928 95 ----KKFTDFAAVRKEISDET----------------------DRIT---GKSKQISN-------IPIQLSIYSPN---- 134 (625)
Q Consensus 95 ----~~~~~~~~~~~~i~~~~----------------------~~~~---g~~~~~s~-------~~i~l~i~~~~---- 134 (625)
....|..++...|+... .++. +-.-.|.. .+|.++.....
T Consensus 148 ~e~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~l~ 227 (741)
T PRK09866 148 TDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLES 227 (741)
T ss_pred HHHHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHHHHhhhhcCceeeeeeeecccccc
Confidence 00112222222221110 0000 00001110 23444444433
Q ss_pred -CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCC--CceEEEec
Q 006928 135 -VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTG--ERTFGVLT 211 (625)
Q Consensus 135 -~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~--~rti~Vlt 211 (625)
..+++||||||+...... .+.++..+.+.++|.|++ |++++......+. .+++.+...+ .|+++|+|
T Consensus 228 ~~~QIIFVDTPGIhk~~~~--------~L~k~M~eqL~eADvVLF-VVDat~~~s~~De-eIlk~Lkk~~K~~PVILVVN 297 (741)
T PRK09866 228 YPGQLTLLDTPGPNEAGQP--------HLQKMLNQQLARASAVLA-VLDYTQLKSISDE-EVREAILAVGQSVPLYVLVN 297 (741)
T ss_pred ccCCEEEEECCCCCCccch--------HHHHHHHHHHhhCCEEEE-EEeCCCCCChhHH-HHHHHHHhcCCCCCEEEEEE
Confidence 369999999999854211 123333457999996555 6666654444443 3556565555 49999999
Q ss_pred cCcccCcccc----HHHHHhCcccccCCCeEEEEeCCh
Q 006928 212 KLDLMDKGTN----ALEVLEGRSYRLQHPWVGIVNRSQ 245 (625)
Q Consensus 212 K~D~~~~~~~----~~~~l~~~~~~l~~g~~~v~~~s~ 245 (625)
|+|+.+...+ ..+.+..........|..|++.|+
T Consensus 298 KIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSA 335 (741)
T PRK09866 298 KFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSS 335 (741)
T ss_pred cccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 9999864432 223222110122334556676665
No 13
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.67 E-value=1.2e-16 Score=147.25 Aligned_cols=146 Identities=26% Similarity=0.389 Sum_probs=89.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
+|+++|.||+|||||+|+|+|... . ++..| |
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~-----v~n~p-------------------------------------------G 32 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-K-----VGNWP-------------------------------------------G 32 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-E-----EEEST-------------------------------------------T
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-e-----ecCCC-------------------------------------------C
Confidence 699999999999999999999974 2 22222 0
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCCCccccHHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi--~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
.+-+...-.+.. +...+.||||||+++..... .+ +.++.+|+ .++|.+|+++ +++. ....+.
T Consensus 33 ----~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s-----~e--e~v~~~~l~~~~~D~ii~Vv-Da~~---l~r~l~ 96 (156)
T PF02421_consen 33 ----TTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKS-----EE--ERVARDYLLSEKPDLIIVVV-DATN---LERNLY 96 (156)
T ss_dssp ----SSSEEEEEEEEE-TTEEEEEEE----SSSSSSS-----HH--HHHHHHHHHHTSSSEEEEEE-EGGG---HHHHHH
T ss_pred ----CCeeeeeEEEEe-cCceEEEEECCCcccCCCCC-----cH--HHHHHHHHhhcCCCEEEEEC-CCCC---HHHHHH
Confidence 000000001111 23679999999998864431 11 45667777 5899776655 4443 345567
Q ss_pred HHHHhCCCCCceEEEeccCcccCccccH--HHHHhCcccccCCCeEEEEeCChhhhhc
Q 006928 195 LAREVDPTGERTFGVLTKLDLMDKGTNA--LEVLEGRSYRLQHPWVGIVNRSQADINK 250 (625)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~~~~--~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (625)
++.++...|.|+++|+||+|.+.+.... .+.+. ..++.+.+.+..++.+++++
T Consensus 97 l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls---~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 97 LTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLS---ERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp HHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHH---HHHTS-EEEEBTTTTBTHHH
T ss_pred HHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHH---HHhCCCEEEEEeCCCcCHHH
Confidence 8888888899999999999998775421 22222 23455666666666665544
No 14
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.66 E-value=6.4e-16 Score=161.20 Aligned_cols=157 Identities=25% Similarity=0.344 Sum_probs=110.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
|.|++||.||+|||||+|+|+|.+. .+|...|-+.+ ++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-----AIV~D~pGvTR-----------------------------------Dr~y 43 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-----AIVSDTPGVTR-----------------------------------DRIY 43 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-----eEeecCCCCcc-----------------------------------CCcc
Confidence 8999999999999999999999987 66666663332 2222
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
+ .....+ ..+.+|||+|+.... ++.+.+++...+...+..+|+||+ |+++...++..|.. +
T Consensus 44 ~------------~~~~~~-~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eADvilf-vVD~~~Git~~D~~-i 104 (444)
T COG1160 44 G------------DAEWLG-REFILIDTGGLDDGD----EDELQELIREQALIAIEEADVILF-VVDGREGITPADEE-I 104 (444)
T ss_pred c------------eeEEcC-ceEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCCEEEE-EEeCCCCCCHHHHH-H
Confidence 2 111111 349999999998643 234888999999999999997666 66777777776654 7
Q ss_pred HHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCCh---hhhhccCCHHHHH
Q 006928 196 AREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQ---ADINKNVDMIAAR 258 (625)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~---~~~~~~~~~~~~~ 258 (625)
++.+.+.++|+|+|+||+|..+......++ +. +|+-..++.|+ .++.++.+.....
T Consensus 105 a~~Lr~~~kpviLvvNK~D~~~~e~~~~ef-----ys--lG~g~~~~ISA~Hg~Gi~dLld~v~~~ 163 (444)
T COG1160 105 AKILRRSKKPVILVVNKIDNLKAEELAYEF-----YS--LGFGEPVPISAEHGRGIGDLLDAVLEL 163 (444)
T ss_pred HHHHHhcCCCEEEEEEcccCchhhhhHHHH-----Hh--cCCCCceEeehhhccCHHHHHHHHHhh
Confidence 777777789999999999988544333333 33 45545555565 5555555554444
No 15
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.65 E-value=4.2e-16 Score=152.82 Aligned_cols=217 Identities=16% Similarity=0.261 Sum_probs=136.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..-+|+|||.||+|||||.|.++|.++ .++||++-.. +.+
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv-----~~vS~K~~TT-----------------------------------r~~ 110 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKV-----SAVSRKVHTT-----------------------------------RHR 110 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCcc-----ccccccccce-----------------------------------eee
Confidence 455899999999999999999999999 5566776221 233
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATSDA 192 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~~~~ 192 (625)
+.| |...+..++.|+||||++......+.. +...+..-.+..++++|+++++++.++. ..-....
T Consensus 111 ilg-------------i~ts~eTQlvf~DTPGlvs~~~~r~~~-l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~v 176 (379)
T KOG1423|consen 111 ILG-------------IITSGETQLVFYDTPGLVSKKMHRRHH-LMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRV 176 (379)
T ss_pred eeE-------------EEecCceEEEEecCCcccccchhhhHH-HHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHH
Confidence 455 777778999999999999765442222 1222233456778899987776655432 2333445
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccccH---HHHHhCcc--------------------cccCCCe---EEEEeCCh-
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNA---LEVLEGRS--------------------YRLQHPW---VGIVNRSQ- 245 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~~~~---~~~l~~~~--------------------~~l~~g~---~~v~~~s~- 245 (625)
+..++.+. ..|.|.|+||+|.......+ .+.+.+.. .+-..|| ..|+..|+
T Consensus 177 l~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL 254 (379)
T KOG1423|consen 177 LHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSAL 254 (379)
T ss_pred HHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecc
Confidence 66666665 47899999999998765432 22222111 1222345 34555555
Q ss_pred --hhhhccCCHHHHHHHHHhhhccCCCCCc--c-ccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006928 246 --ADINKNVDMIAARRKEREYFETSPEYGH--L-ASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDE 312 (625)
Q Consensus 246 --~~~~~~~~~~~~~~~e~~~f~~~~~~~~--~-~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~ 312 (625)
.|+.+..+++...+.. ++|+.. + .+........+.+++.|++|+.+++||-.+.-...|++
T Consensus 255 ~G~GikdlkqyLmsqa~~------gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqEVPY~lq~~i~~w~e 320 (379)
T KOG1423|consen 255 YGEGIKDLKQYLMSQAPP------GPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVPYNLQVRILSWKE 320 (379)
T ss_pred cccCHHHHHHHHHhcCCC------CCCCCCcccccccCHHHHHHHHHHHHHHhhCccccCcceEEEEEEeee
Confidence 5555554444433322 333322 1 23334445559999999999999999987655444443
No 16
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.61 E-value=4.2e-14 Score=148.07 Aligned_cols=156 Identities=22% Similarity=0.248 Sum_probs=102.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
=-.+|++|.||+|||||||+|+|.+. .+||..|-..+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~-----AIVTdI~GTTR-------------------------------------- 253 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDR-----AIVTDIAGTTR-------------------------------------- 253 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCc-----eEecCCCCCcc--------------------------------------
Confidence 34799999999999999999999998 88998882222
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
|.|...+.- +..++.++||.|+-..... +++.--+-.++.++++|. ||+|.+++..+...+..
T Consensus 254 ---------Dviee~i~i-~G~pv~l~DTAGiRet~d~-----VE~iGIeRs~~~i~~ADl-vL~v~D~~~~~~~~d~~- 316 (454)
T COG0486 254 ---------DVIEEDINL-NGIPVRLVDTAGIRETDDV-----VERIGIERAKKAIEEADL-VLFVLDASQPLDKEDLA- 316 (454)
T ss_pred ---------ceEEEEEEE-CCEEEEEEecCCcccCccH-----HHHHHHHHHHHHHHhCCE-EEEEEeCCCCCchhhHH-
Confidence 222222222 2367999999998754322 333333556788899996 55567777655554443
Q ss_pred HHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHH
Q 006928 195 LAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (625)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (625)
+.. .-+.++++++|+||.|+..+...... ....+..+..+...+..+++.+.+.+.
T Consensus 317 ~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i~ 372 (454)
T COG0486 317 LIE-LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLDALREAIK 372 (454)
T ss_pred HHH-hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCHHHHHHHHH
Confidence 333 45668999999999999986531100 122334467777777666655544443
No 17
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=5.7e-14 Score=149.44 Aligned_cols=176 Identities=20% Similarity=0.164 Sum_probs=98.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
+..|++||.+|||||||||+|++...-......+|+.|+.-.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Gi-------------------------------------- 200 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGV-------------------------------------- 200 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEE--------------------------------------
Confidence 458999999999999999999998631122233555553222
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC---CccccHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN---QDIATSD 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~---~d~~~~~ 191 (625)
+..++...++|+||||+...+..+ . ..... ..+++++++++++++.... .+.. .+
T Consensus 201 ---------------v~~~~~~~i~~vDtPGi~~~a~~~--~---~Lg~~-~l~~i~radvlL~VVD~s~~~~~d~~-e~ 258 (390)
T PRK12298 201 ---------------VRVDDERSFVVADIPGLIEGASEG--A---GLGIR-FLKHLERCRVLLHLIDIAPIDGSDPV-EN 258 (390)
T ss_pred ---------------EEeCCCcEEEEEeCCCccccccch--h---hHHHH-HHHHHHhCCEEEEEeccCcccccChH-HH
Confidence 222223458999999998754331 1 11122 2357889998777654331 1111 11
Q ss_pred HHHHHHHhCC-----CCCceEEEeccCcccCccccHHHHHhCcccccC--CCeEEEEeCChhhhhccCCHHHHHHHHHhh
Q 006928 192 AIKLAREVDP-----TGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQ--HPWVGIVNRSQADINKNVDMIAARRKEREY 264 (625)
Q Consensus 192 ~l~l~~~~d~-----~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~--~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~ 264 (625)
...+.+++.. ...|.++|+||+|+..... ..+.+......+. ..++.+...+..++..++..+.....+.++
T Consensus 259 ~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-l~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 259 ARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-AEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPR 337 (390)
T ss_pred HHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-HHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCcc
Confidence 1223333332 3589999999999975432 2222221001111 234555555556666666666666655544
Q ss_pred hccCCCC
Q 006928 265 FETSPEY 271 (625)
Q Consensus 265 f~~~~~~ 271 (625)
++....+
T Consensus 338 ~~~~~~~ 344 (390)
T PRK12298 338 EEAEEAE 344 (390)
T ss_pred cCCcccc
Confidence 4433333
No 18
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.53 E-value=2e-13 Score=143.70 Aligned_cols=126 Identities=21% Similarity=0.328 Sum_probs=84.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..|.|++||.+|+|||||+|+|+|.++...+...+|+-|++-.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~------------------------------------- 230 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRR------------------------------------- 230 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEE-------------------------------------
Confidence 6799999999999999999999998754444444555553222
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~-- 191 (625)
+..++...+.|+||||+++. -|++..+.++.. ..++.++|++++++ +++.......
T Consensus 231 ----------------i~~~~~~~i~l~DT~G~~~~----l~~~lie~f~~t-le~~~~ADlil~Vv-D~s~~~~~~~~~ 288 (351)
T TIGR03156 231 ----------------LDLPDGGEVLLTDTVGFIRD----LPHELVAAFRAT-LEEVREADLLLHVV-DASDPDREEQIE 288 (351)
T ss_pred ----------------EEeCCCceEEEEecCccccc----CCHHHHHHHHHH-HHHHHhCCEEEEEE-ECCCCchHHHHH
Confidence 22333457999999998653 233455555553 45788999876655 4443322221
Q ss_pred -HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
+..+.+.+...+.|+++|+||+|+.+.
T Consensus 289 ~~~~~L~~l~~~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 289 AVEKVLEELGAEDIPQLLVYNKIDLLDE 316 (351)
T ss_pred HHHHHHHHhccCCCCEEEEEEeecCCCh
Confidence 234556665557899999999999754
No 19
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=1.7e-13 Score=128.85 Aligned_cols=128 Identities=27% Similarity=0.397 Sum_probs=89.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
++|.|+++|..|+||||+||+|+|..-|-|- +..|-..++.+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArt----SktPGrTq~iN---------------------------------- 64 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLART----SKTPGRTQLIN---------------------------------- 64 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeec----CCCCCccceeE----------------------------------
Confidence 7999999999999999999999997633322 22231111100
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcC-CCE-EEEEEecCCCccccHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK-PSC-IILAISPANQDIATSD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~-~~~-iIl~v~~a~~d~~~~~ 191 (625)
.+.. ...+-|||+||+.-... +....+.+..++..|++. ++. .++.++++.......|
T Consensus 65 ----------------ff~~-~~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D 124 (200)
T COG0218 65 ----------------FFEV-DDELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLD 124 (200)
T ss_pred ----------------EEEe-cCcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHH
Confidence 1111 12388999999886543 346788999999999975 341 2233567776666655
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCccc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDKGT 220 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~~ 220 (625)
. ++...+...+.++++|+||+|.+..+.
T Consensus 125 ~-em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 125 R-EMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred H-HHHHHHHHcCCCeEEEEEccccCChhH
Confidence 4 477777788999999999999998764
No 20
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.51 E-value=1.5e-13 Score=143.53 Aligned_cols=126 Identities=21% Similarity=0.304 Sum_probs=79.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
-++.|++||.+|||||||||+|++...-..+...+|+.|..-.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~------------------------------------- 199 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGV------------------------------------- 199 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEE-------------------------------------
Confidence 3678999999999999999999987532112233566663222
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~-- 191 (625)
+..++...++++||||++..+..+ ..+.....+++++++++|++++..+.+ ...+
T Consensus 200 ----------------v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~vlI~ViD~s~~~-s~e~~~ 256 (335)
T PRK12299 200 ----------------VRVDDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRLLLHLVDIEAVD-PVEDYK 256 (335)
T ss_pred ----------------EEeCCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcCEEEEEEcCCCCC-CHHHHH
Confidence 122234568999999998754431 122344566778899877755543322 1222
Q ss_pred -HHHHHHHhCC--CCCceEEEeccCcccCcc
Q 006928 192 -AIKLAREVDP--TGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 192 -~l~l~~~~d~--~~~rti~VltK~D~~~~~ 219 (625)
+...+..+++ ...|.++|+||+|+.+..
T Consensus 257 ~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~ 287 (335)
T PRK12299 257 TIRNELEKYSPELADKPRILVLNKIDLLDEE 287 (335)
T ss_pred HHHHHHHHhhhhcccCCeEEEEECcccCCch
Confidence 2222333333 368999999999997643
No 21
>PRK11058 GTPase HflX; Provisional
Probab=99.50 E-value=4.1e-13 Score=144.59 Aligned_cols=126 Identities=19% Similarity=0.312 Sum_probs=82.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.+|.|++||.+|||||||+|+|+|.++...+.-.+|+-|+.-.
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~------------------------------------- 238 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRR------------------------------------- 238 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEE-------------------------------------
Confidence 6799999999999999999999998764222223444442211
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~-- 191 (625)
+..++...+.|+||||+++. .|.+..+.+... ..+++++|.+|++++ ++.......
T Consensus 239 ----------------i~l~~~~~~~l~DTaG~~r~----lp~~lve~f~~t-l~~~~~ADlIL~VvD-aS~~~~~e~l~ 296 (426)
T PRK11058 239 ----------------IDVADVGETVLADTVGFIRH----LPHDLVAAFKAT-LQETRQATLLLHVVD-AADVRVQENIE 296 (426)
T ss_pred ----------------EEeCCCCeEEEEecCccccc----CCHHHHHHHHHH-HHHhhcCCEEEEEEe-CCCccHHHHHH
Confidence 21222336789999998653 233455555553 567789998777554 443322121
Q ss_pred -HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
+..++.++...+.|+++|+||+|+.+.
T Consensus 297 ~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 297 AVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred HHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 234566666567899999999999753
No 22
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.49 E-value=2.4e-13 Score=135.76 Aligned_cols=155 Identities=21% Similarity=0.297 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHHHHHhccCC---CCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCC
Q 006928 6 SLIGLINKIQRACTVLGDHG---GEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEG 82 (625)
Q Consensus 6 ~l~~~~~~l~~~~~~~~~~~---~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~ 82 (625)
.+.++++++.+-+.-++..- .++|+...++|+|+|.|.||+|||||+++|++.+.- +-..|
T Consensus 136 R~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpE------vA~YP---------- 199 (346)
T COG1084 136 RVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPE------VAPYP---------- 199 (346)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCc------cCCCC----------
Confidence 44555555555444444211 167788889999999999999999999999998741 11122
Q ss_pred CCcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHH
Q 006928 83 GTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDI 162 (625)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i 162 (625)
|+.+-|.+-....+...+.+|||||+-+.+.. --..|
T Consensus 200 --------------------------------------FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~-----ErN~I 236 (346)
T COG1084 200 --------------------------------------FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLE-----ERNEI 236 (346)
T ss_pred --------------------------------------ccccceeEeeeecCCceEEEecCCcccCCChH-----HhcHH
Confidence 22223333344445568999999999876544 22334
Q ss_pred HHHHHHhhcCCCEEEEEEecCCCc--cccHHHHHHHHHhCCC-CCceEEEeccCcccCcc
Q 006928 163 ENMVRSYVEKPSCIILAISPANQD--IATSDAIKLAREVDPT-GERTFGVLTKLDLMDKG 219 (625)
Q Consensus 163 ~~~v~~yi~~~~~iIl~v~~a~~d--~~~~~~l~l~~~~d~~-~~rti~VltK~D~~~~~ 219 (625)
+..+-..+++-+.+||++.+.+.. ++-.+=..+.+++.+. ..|++.|+||+|..+.+
T Consensus 237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 555555556544456666665542 2222223355555543 36899999999998654
No 23
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.46 E-value=3.3e-13 Score=141.10 Aligned_cols=157 Identities=18% Similarity=0.251 Sum_probs=105.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+..+|++||.||+|||||+|+|+|.+. .++...|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR-----~Iv~~~a----------------------------------------- 210 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEER-----VIVSDIA----------------------------------------- 210 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCce-----EEecCCC-----------------------------------------
Confidence 567999999999999999999999985 2222222
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
|-+.+.|...+.. +...+.||||.|+-+...-... .+..--.-+...|..+|.+ ++|.+|..++..+|..
T Consensus 211 ------GTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~--~E~~Sv~rt~~aI~~a~vv-llviDa~~~~~~qD~~ 280 (444)
T COG1160 211 ------GTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITES--VEKYSVARTLKAIERADVV-LLVIDATEGISEQDLR 280 (444)
T ss_pred ------CccccceeeeEEE-CCeEEEEEECCCCCcccccccc--eEEEeehhhHhHHhhcCEE-EEEEECCCCchHHHHH
Confidence 2333444444442 3467999999999875543211 1111112245677889965 4577899889888875
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCc--ccccCCCeEEEEeCChhh
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGR--SYRLQHPWVGIVNRSQAD 247 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~--~~~l~~g~~~v~~~s~~~ 247 (625)
++..+...|...++|+||||+++..+...+....+ ..-..++|..++..|+..
T Consensus 281 -ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~ 335 (444)
T COG1160 281 -IAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALT 335 (444)
T ss_pred -HHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecC
Confidence 88888889999999999999998743222222110 123346788888888753
No 24
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.45 E-value=6.8e-12 Score=136.67 Aligned_cols=155 Identities=23% Similarity=0.281 Sum_probs=91.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+-+.|+++|.+|+|||||+|+|+|.++ .+++..|...
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~-----a~v~~~~gtT-------------------------------------- 250 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER-----AIVTDIAGTT-------------------------------------- 250 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCCCcc--------------------------------------
Confidence 346899999999999999999999875 2333333100
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHH-HHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDI-ENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i-~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
.+.+...+.. +...+.|+||||+... .+..+.. -..+..++.++|++++++ +++......+
T Consensus 251 ---------~d~~~~~i~~-~g~~i~l~DT~G~~~~------~~~ie~~gi~~~~~~~~~aD~il~Vv-D~s~~~s~~~- 312 (449)
T PRK05291 251 ---------RDVIEEHINL-DGIPLRLIDTAGIRET------DDEVEKIGIERSREAIEEADLVLLVL-DASEPLTEED- 312 (449)
T ss_pred ---------cccEEEEEEE-CCeEEEEEeCCCCCCC------ccHHHHHHHHHHHHHHHhCCEEEEEe-cCCCCCChhH-
Confidence 0111111111 2356899999998532 1122221 223567889999876654 5544333332
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHHH
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (625)
..+... ..+.|+++|+||+|+.+..... ......++.+...+..+++.+...+....
T Consensus 313 ~~~l~~--~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 313 DEILEE--LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred HHHHHh--cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 233333 3468999999999997543211 11223566777777777766666555443
No 25
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.45 E-value=1.3e-11 Score=133.83 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=90.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.-++|+++|.+|+|||||+|+|+|.++ .+++..|...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~-----aivs~~pgtTr------------------------------------- 239 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDR-----AIVSDIKGTTR------------------------------------- 239 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCCCcEE-------------------------------------
Confidence 456899999999999999999999764 33444442111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
+.+...+.. +...+.+|||||+...... +...--.....|++++|++++++ +++......+.
T Consensus 240 ----------d~~~~~i~~-~g~~v~l~DTaG~~~~~~~-----ie~~gi~~~~~~~~~aD~il~V~-D~s~~~s~~~~- 301 (442)
T TIGR00450 240 ----------DVVEGDFEL-NGILIKLLDTAGIREHADF-----VERLGIEKSFKAIKQADLVIYVL-DASQPLTKDDF- 301 (442)
T ss_pred ----------EEEEEEEEE-CCEEEEEeeCCCcccchhH-----HHHHHHHHHHHHHhhCCEEEEEE-ECCCCCChhHH-
Confidence 001111111 1245789999998643211 11111234567899999877755 44443332322
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHHH
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (625)
+...+...+.|+|+|+||+|+... +...+. ..++..++.+...+ .++.++++.+....
T Consensus 302 -~l~~~~~~~~piIlV~NK~Dl~~~--~~~~~~----~~~~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 302 -LIIDLNKSKKPFILVLNKIDLKIN--SLEFFV----SSKVLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred -HHHHHhhCCCCEEEEEECccCCCc--chhhhh----hhcCCceEEEEEec-CCHHHHHHHHHHHH
Confidence 444455457899999999999654 221111 12234455555554 34444444444433
No 26
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.44 E-value=1e-12 Score=122.85 Aligned_cols=123 Identities=23% Similarity=0.362 Sum_probs=77.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccc-cccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
-..|+++|.+||||||++|+|+|.++.+.+... +|+.+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 41 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR----------------------------------------- 41 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece-----------------------------------------
Confidence 457999999999999999999998752222111 11100
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
+. .+......++.++||||+...... ....+......++..+|.+++++... ....... .
T Consensus 42 ------------~~-~~~~~~~~~~~liDtpG~~~~~~~-----~~~~~~~~~~~~~~~~d~i~~v~d~~-~~~~~~~-~ 101 (168)
T cd04163 42 ------------IR-GIYTDDDAQIIFVDTPGIHKPKKK-----LGERMVKAAWSALKDVDLVLFVVDAS-EPIGEGD-E 101 (168)
T ss_pred ------------EE-EEEEcCCeEEEEEECCCCCcchHH-----HHHHHHHHHHHHHHhCCEEEEEEECC-CccCchH-H
Confidence 00 012222357899999998764332 23334556677889999877765544 3333332 2
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+.+.+...+.+.++|+||+|+...
T Consensus 102 ~~~~~~~~~~~~~iiv~nK~Dl~~~ 126 (168)
T cd04163 102 FILELLKKSKTPVILVLNKIDLVKD 126 (168)
T ss_pred HHHHHHHHhCCCEEEEEEchhcccc
Confidence 2445555457899999999999853
No 27
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.44 E-value=1.5e-12 Score=127.16 Aligned_cols=127 Identities=23% Similarity=0.359 Sum_probs=79.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..|.|+|+|.+|||||||+|+|+|..+.+.+....|..|...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~-------------------------------------- 81 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTR-------------------------------------- 81 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeE--------------------------------------
Confidence 578999999999999999999999875433332233322111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--- 190 (625)
.+..++...++||||||+.... +....+.+.... .++.++|.+++++ +++......
T Consensus 82 ---------------~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~~-~~~~~~d~ii~v~-D~~~~~~~~~~~ 140 (204)
T cd01878 82 ---------------RLRLPDGREVLLTDTVGFIRDL----PHQLVEAFRSTL-EEVAEADLLLHVV-DASDPDYEEQIE 140 (204)
T ss_pred ---------------EEEecCCceEEEeCCCccccCC----CHHHHHHHHHHH-HHHhcCCeEEEEE-ECCCCChhhHHH
Confidence 1222233379999999986532 122333334333 4567899877755 444322222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.+..+.+.+...+.++++|+||+|+.+..
T Consensus 141 ~~~~~l~~~~~~~~~viiV~NK~Dl~~~~ 169 (204)
T cd01878 141 TVEKVLKELGAEDIPMILVLNKIDLLDDE 169 (204)
T ss_pred HHHHHHHHcCcCCCCEEEEEEccccCChH
Confidence 23345566655578999999999997653
No 28
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.43 E-value=2.4e-12 Score=124.99 Aligned_cols=166 Identities=20% Similarity=0.328 Sum_probs=94.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc--ccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
+|++||.+|+|||||+|+|+|.+.+.++.. .+|+.+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~-------------------------------------- 43 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKES-------------------------------------- 43 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceee--------------------------------------
Confidence 699999999999999999999987655532 2444331111
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--H
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--A 192 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~--~ 192 (625)
.++ +...+++|||||+...... .+++...+...+......+|++++ |+++.. +...+ .
T Consensus 44 -------------~~~---~~~~i~viDTPG~~d~~~~--~~~~~~~i~~~~~~~~~g~~~ill-Vi~~~~-~t~~d~~~ 103 (196)
T cd01852 44 -------------AVW---DGRRVNVIDTPGLFDTSVS--PEQLSKEIVRCLSLSAPGPHAFLL-VVPLGR-FTEEEEQA 103 (196)
T ss_pred -------------EEE---CCeEEEEEECcCCCCccCC--hHHHHHHHHHHHHhcCCCCEEEEE-EEECCC-cCHHHHHH
Confidence 001 2357999999999875431 223333344444444567886555 556665 54443 2
Q ss_pred HHHHHHh-CC-CCCceEEEeccCcccCccccHHHHHhCc-------ccccCCCeEEEEeCC-----hhhhhccCCHHHHH
Q 006928 193 IKLAREV-DP-TGERTFGVLTKLDLMDKGTNALEVLEGR-------SYRLQHPWVGIVNRS-----QADINKNVDMIAAR 258 (625)
Q Consensus 193 l~l~~~~-d~-~~~rti~VltK~D~~~~~~~~~~~l~~~-------~~~l~~g~~~v~~~s-----~~~~~~~~~~~~~~ 258 (625)
++.++++ .+ ...++++|+|+.|.+... ...+.+... ....+.-|+...++. ......+++.++..
T Consensus 104 l~~l~~~fg~~~~~~~ivv~T~~d~l~~~-~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~ 182 (196)
T cd01852 104 VETLQELFGEKVLDHTIVLFTRGDDLEGG-TLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESM 182 (196)
T ss_pred HHHHHHHhChHhHhcEEEEEECccccCCC-cHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHH
Confidence 3333333 11 126899999999988654 223332221 112233455555553 13344555555555
Q ss_pred HHH
Q 006928 259 RKE 261 (625)
Q Consensus 259 ~~e 261 (625)
..|
T Consensus 183 ~~~ 185 (196)
T cd01852 183 VKE 185 (196)
T ss_pred HHh
Confidence 555
No 29
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.41 E-value=1.8e-12 Score=122.05 Aligned_cols=117 Identities=19% Similarity=0.292 Sum_probs=71.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
|.|+|+|.+|+|||||+|+|++..+.......+|.-....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~---------------------------------------- 40 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAF---------------------------------------- 40 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccE----------------------------------------
Confidence 7899999999999999999998875222111111111000
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
.+....+...++++|||||... ...+...++..+|++++++.. +... .......
T Consensus 41 -----------~~~~~~~~~~~~~iiDtpG~~~-------------~~~~~~~~~~~~d~il~v~d~-~~~~-~~~~~~~ 94 (168)
T cd01887 41 -----------EVPAEVLKIPGITFIDTPGHEA-------------FTNMRARGASLTDIAILVVAA-DDGV-MPQTIEA 94 (168)
T ss_pred -----------EEecccCCcceEEEEeCCCcHH-------------HHHHHHHHHhhcCEEEEEEEC-CCCc-cHHHHHH
Confidence 0001102346899999999432 244556677889987775544 3322 2222223
Q ss_pred HHHhCCCCCceEEEeccCcccCc
Q 006928 196 AREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~ 218 (625)
...+...+.|.++|+||+|+...
T Consensus 95 ~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 95 IKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHHHHHcCCCEEEEEEceecccc
Confidence 33333457899999999998754
No 30
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.41 E-value=2.1e-12 Score=141.00 Aligned_cols=155 Identities=21% Similarity=0.286 Sum_probs=102.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
.+|+++|+||+||||++|+|+|.+. .+.+.|-+.. ++..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q------~VgNwpGvTV-----------------------------------Ekke 42 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ------KVGNWPGVTV-----------------------------------EKKE 42 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc------eecCCCCeeE-----------------------------------EEEE
Confidence 4699999999999999999999873 3444443222 1111
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~--~~~~iIl~v~~a~~d~~~~~~l 193 (625)
| ........+++|||||+++......+ +..+++|+. ++|.||-+|+++| -...+
T Consensus 43 g-------------~~~~~~~~i~ivDLPG~YSL~~~S~D-------E~Var~~ll~~~~D~ivnVvDAtn----LeRnL 98 (653)
T COG0370 43 G-------------KLKYKGHEIEIVDLPGTYSLTAYSED-------EKVARDFLLEGKPDLIVNVVDATN----LERNL 98 (653)
T ss_pred E-------------EEEecCceEEEEeCCCcCCCCCCCch-------HHHHHHHHhcCCCCEEEEEcccch----HHHHH
Confidence 2 11122345899999999987655211 566788884 5897776665555 35556
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHH
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (625)
.+.-++-..|.|+++++|++|...+..-..|.-+- ...++.+.+.+..+..+++++.+....
T Consensus 99 yltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L-~~~LGvPVv~tvA~~g~G~~~l~~~i~ 160 (653)
T COG0370 99 YLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKL-SKLLGVPVVPTVAKRGEGLEELKRAII 160 (653)
T ss_pred HHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHH-HHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence 66667777899999999999998875422222111 246677777777777777665554443
No 31
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.41 E-value=1.7e-12 Score=125.74 Aligned_cols=125 Identities=23% Similarity=0.343 Sum_probs=78.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccc--cccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (625)
.+|.|+++|.+|+|||||+|+|+|.++.+..+.. +|+.+ +
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~----------------------------------- 64 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI---N----------------------------------- 64 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE---E-----------------------------------
Confidence 7899999999999999999999997643322111 11111 0
Q ss_pred hhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCE--EEEEEecCCCcccc
Q 006928 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSC--IILAISPANQDIAT 189 (625)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~--iIl~v~~a~~d~~~ 189 (625)
.... ..++.||||||+.... .+....+.+..++..|++..+. ++++|.+++.....
T Consensus 65 ------------------~~~~-~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~ 122 (196)
T PRK00454 65 ------------------FFEV-NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKE 122 (196)
T ss_pred ------------------EEec-CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCH
Confidence 0110 2579999999976432 2333455667788888876542 23334455443333
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.+ ..+.+.+...+.++++|+||+|+.+.+
T Consensus 123 ~~-~~i~~~l~~~~~~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 123 LD-LQMIEWLKEYGIPVLIVLTKADKLKKG 151 (196)
T ss_pred HH-HHHHHHHHHcCCcEEEEEECcccCCHH
Confidence 32 223344455678899999999998654
No 32
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.41 E-value=1.6e-12 Score=122.70 Aligned_cols=125 Identities=22% Similarity=0.318 Sum_probs=70.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|++||.+|||||||+|+|+|....+......|+.|.. |
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~-----------------------------------------~ 40 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNL-----------------------------------------G 40 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcc-----------------------------------------e
Confidence 48999999999999999999876421111112232210 0
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-c-ccc-HHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-D-IAT-SDAI 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d-~~~-~~~l 193 (625)
. +...+...+.|+||||+....... ..+ .....+.+..+|++++++...+. + +.. ..+.
T Consensus 41 ----------~--~~~~~~~~~~l~DtpG~~~~~~~~--~~~----~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~ 102 (170)
T cd01898 41 ----------V--VRVDDGRSFVVADIPGLIEGASEG--KGL----GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIR 102 (170)
T ss_pred ----------E--EEcCCCCeEEEEecCcccCccccc--CCc----hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHH
Confidence 0 111122479999999986432211 111 22233445679987776654432 1 111 1222
Q ss_pred HHHHHhCC--CCCceEEEeccCcccCccc
Q 006928 194 KLAREVDP--TGERTFGVLTKLDLMDKGT 220 (625)
Q Consensus 194 ~l~~~~d~--~~~rti~VltK~D~~~~~~ 220 (625)
+.+....+ .+.|.++|+||+|+.+...
T Consensus 103 ~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~ 131 (170)
T cd01898 103 NELELYNPELLEKPRIVVLNKIDLLDEEE 131 (170)
T ss_pred HHHHHhCccccccccEEEEEchhcCCchh
Confidence 22333332 3689999999999976543
No 33
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.40 E-value=2.6e-12 Score=113.67 Aligned_cols=115 Identities=23% Similarity=0.340 Sum_probs=73.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
+|+|+|.+|+|||||+|+|+|.+..+.+.. .+|+.+.. ..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~-~~-------------------------------------- 41 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVY-GQ-------------------------------------- 41 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEE-EE--------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeee-ee--------------------------------------
Confidence 589999999999999999999754344332 35555511 10
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
..-+...+.|+||||+......+ ...+ ....+.+.+..+|.+|+++. ++... .....++
T Consensus 42 ---------------~~~~~~~~~~vDtpG~~~~~~~~---~~~~-~~~~~~~~~~~~d~ii~vv~-~~~~~-~~~~~~~ 100 (116)
T PF01926_consen 42 ---------------FEYNNKKFILVDTPGINDGESQD---NDGK-EIRKFLEQISKSDLIIYVVD-ASNPI-TEDDKNI 100 (116)
T ss_dssp ---------------EEETTEEEEEEESSSCSSSSHHH---HHHH-HHHHHHHHHCTESEEEEEEE-TTSHS-HHHHHHH
T ss_pred ---------------eeeceeeEEEEeCCCCcccchhh---HHHH-HHHHHHHHHHHCCEEEEEEE-CCCCC-CHHHHHH
Confidence 00023456899999988643221 0011 22334555588998777665 55422 3334456
Q ss_pred HHHhCCCCCceEEEecc
Q 006928 196 AREVDPTGERTFGVLTK 212 (625)
Q Consensus 196 ~~~~d~~~~rti~VltK 212 (625)
.+++. .+.|+++|+||
T Consensus 101 ~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 101 LRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHH-TTSEEEEEEES
T ss_pred HHHHh-cCCCEEEEEcC
Confidence 67776 78999999998
No 34
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.40 E-value=2.2e-12 Score=123.43 Aligned_cols=123 Identities=25% Similarity=0.353 Sum_probs=80.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccc--cccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (625)
+.|.|+++|.+|+||||++|+|+|..+.+.-+.. +|+.+
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~--------------------------------------- 57 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLI--------------------------------------- 57 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEE---------------------------------------
Confidence 6889999999999999999999998642211110 11111
Q ss_pred hhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcC---CCEEEEEEecCCCccc
Q 006928 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK---PSCIILAISPANQDIA 188 (625)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~---~~~iIl~v~~a~~d~~ 188 (625)
....+ + .++.+|||||+..... +......+..+...|++. .+++++ |++++.++.
T Consensus 58 --------------~~~~~--~--~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ii~-vvd~~~~~~ 115 (179)
T TIGR03598 58 --------------NFFEV--N--DGFRLVDLPGYGYAKV---SKEEKEKWQKLIEEYLEKRENLKGVVL-LMDIRHPLK 115 (179)
T ss_pred --------------EEEEe--C--CcEEEEeCCCCccccC---ChhHHHHHHHHHHHHHHhChhhcEEEE-EecCCCCCC
Confidence 00111 1 3689999999765422 233345567777788865 456555 556666555
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 189 TSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 189 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
..+. .+.+.+...+.|+++|+||+|+++.
T Consensus 116 ~~~~-~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 116 ELDL-EMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHH-HHHHHHHHcCCCEEEEEECcccCCH
Confidence 5544 3556666678999999999999864
No 35
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.39 E-value=1.8e-12 Score=140.31 Aligned_cols=125 Identities=21% Similarity=0.207 Sum_probs=75.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
-+..|++||.+|||||||||+|++.+.-..+...+|+.|..-.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGv------------------------------------- 200 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGV------------------------------------- 200 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEE-------------------------------------
Confidence 4678999999999999999999997532222233555552211
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-----ccc
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-----DIA 188 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-----d~~ 188 (625)
+.. +...++|+||||++..+.. .+.+.....++++++++||++|+.++. .+.
T Consensus 201 ----------------v~~-~~~~f~laDtPGliegas~------g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~ 257 (500)
T PRK12296 201 ----------------VQA-GDTRFTVADVPGLIPGASE------GKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLS 257 (500)
T ss_pred ----------------EEE-CCeEEEEEECCCCccccch------hhHHHHHHHHHHHhcCEEEEEECCcccccccCchh
Confidence 111 1246899999999864432 112223345677889987776554321 111
Q ss_pred cHHH-HHHHHHhC-----------CCCCceEEEeccCcccCc
Q 006928 189 TSDA-IKLAREVD-----------PTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 189 ~~~~-l~l~~~~d-----------~~~~rti~VltK~D~~~~ 218 (625)
..+. ...+..+. ..+.|.|+|+||+|+.+.
T Consensus 258 d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da 299 (500)
T PRK12296 258 DIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA 299 (500)
T ss_pred hHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence 1111 11112222 246899999999998654
No 36
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.39 E-value=4.4e-12 Score=135.77 Aligned_cols=123 Identities=23% Similarity=0.254 Sum_probs=74.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
++.|++||.+|||||||||+|++.+.-..+...+|..|..-.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~-------------------------------------- 199 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGV-------------------------------------- 199 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEE--------------------------------------
Confidence 459999999999999999999987621111223455552111
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC---cc-cc-
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ---DI-AT- 189 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~---d~-~~- 189 (625)
+..++...++|+||||++..+..+ ..+.....+++++++.+|++++.++. +. ..
T Consensus 200 ---------------v~~~~~~~~~laD~PGliega~~~------~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~ 258 (424)
T PRK12297 200 ---------------VETDDGRSFVMADIPGLIEGASEG------VGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDY 258 (424)
T ss_pred ---------------EEEeCCceEEEEECCCCccccccc------chHHHHHHHHHhhCCEEEEEEeCCccccCChHHHH
Confidence 111223569999999998644321 11223334556779988776655432 11 11
Q ss_pred HHHHHHHHHhCC--CCCceEEEeccCccc
Q 006928 190 SDAIKLAREVDP--TGERTFGVLTKLDLM 216 (625)
Q Consensus 190 ~~~l~l~~~~d~--~~~rti~VltK~D~~ 216 (625)
..+.+.+..+.+ .+.|.++|+||+|+.
T Consensus 259 ~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 259 EKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred HHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 112223333333 468999999999974
No 37
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.38 E-value=3e-12 Score=133.63 Aligned_cols=126 Identities=22% Similarity=0.292 Sum_probs=77.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
-++.|++||.+|||||||||+|++..........+|+.|+.-.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~------------------------------------- 198 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGV------------------------------------- 198 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEE-------------------------------------
Confidence 3578999999999999999999987532222234566663222
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc-c-HH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA-T-SD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~-~-~~ 191 (625)
+...+...++|+||||+......+ ..+.....+++++++.++++++..+.+.. . .+
T Consensus 199 ----------------v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~ 256 (329)
T TIGR02729 199 ----------------VRVDDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRVLLHLIDISPLDGRDPIED 256 (329)
T ss_pred ----------------EEeCCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhCEEEEEEcCccccccCHHHH
Confidence 111223568999999998654321 12234455667789977776544332111 1 11
Q ss_pred ---HHHHHHHhCC--CCCceEEEeccCcccCc
Q 006928 192 ---AIKLAREVDP--TGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ---~l~l~~~~d~--~~~rti~VltK~D~~~~ 218 (625)
+.+.+..+.+ ...|.++|+||+|+.+.
T Consensus 257 l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 257 YEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred HHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 1222223332 36899999999999765
No 38
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.38 E-value=5e-12 Score=119.17 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=23.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
|.|+++|.+|+|||||+|+|++..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999999864
No 39
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=3.8e-12 Score=140.09 Aligned_cols=158 Identities=18% Similarity=0.258 Sum_probs=95.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..|.|++||.+|+|||||+|+|+|..+ ..+...|.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~-----~~v~~~~g---------------------------------------- 71 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRRE-----AVVEDVPG---------------------------------------- 71 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCc-----ccccCCCC----------------------------------------
Confidence 579999999999999999999999764 11222221
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
++.+.+...+.. +...+.||||||+.... ..+.+.+...+..|++.+|++|+++ +++......+ .
T Consensus 72 -------vT~d~~~~~~~~-~~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~aD~il~Vv-D~~~~~s~~~-~ 136 (472)
T PRK03003 72 -------VTRDRVSYDAEW-NGRRFTVVDTGGWEPDA-----KGLQASVAEQAEVAMRTADAVLFVV-DATVGATATD-E 136 (472)
T ss_pred -------CCEeeEEEEEEE-CCcEEEEEeCCCcCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEE-ECCCCCCHHH-H
Confidence 111111111211 22458999999976322 2256677788888999999877755 4544333332 2
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCC-eEEEEeCChhhhhccCCHHH
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHP-WVGIVNRSQADINKNVDMIA 256 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~~ 256 (625)
.++..+...+.|+++|+||+|+.....+..+. +.++.+ .+.+.+.+..+++++.+.+.
T Consensus 137 ~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~-----~~~g~~~~~~iSA~~g~gi~eL~~~i~ 195 (472)
T PRK03003 137 AVARVLRRSGKPVILAANKVDDERGEADAAAL-----WSLGLGEPHPVSALHGRGVGDLLDAVL 195 (472)
T ss_pred HHHHHHHHcCCCEEEEEECccCCccchhhHHH-----HhcCCCCeEEEEcCCCCCcHHHHHHHH
Confidence 35555555689999999999986543222222 122222 23455555555555544443
No 40
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.37 E-value=1.1e-11 Score=135.30 Aligned_cols=125 Identities=20% Similarity=0.295 Sum_probs=79.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
..+.|+++|.+|+|||||+|+|+|.+..+.+.. .+|+.+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~--------------------------------------- 211 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSI--------------------------------------- 211 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcE---------------------------------------
Confidence 456899999999999999999999864222211 1222221
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
...+.. +...+++|||||+.+.... .+..+.........+++.+|++|+++ ++......++.
T Consensus 212 --------------~~~~~~-~~~~~~liDT~G~~~~~~~--~~~~e~~~~~~~~~~~~~ad~~ilV~-D~~~~~~~~~~ 273 (429)
T TIGR03594 212 --------------DIPFER-NGKKYLLIDTAGIRRKGKV--TEGVEKYSVLRTLKAIERADVVLLVL-DATEGITEQDL 273 (429)
T ss_pred --------------eEEEEE-CCcEEEEEECCCccccccc--hhhHHHHHHHHHHHHHHhCCEEEEEE-ECCCCccHHHH
Confidence 111111 2246899999998764432 11122222233457889999877755 55555555544
Q ss_pred HHHHHHhCCCCCceEEEeccCccc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLM 216 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~ 216 (625)
++++.+...+.+.|+|+||+|+.
T Consensus 274 -~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 274 -RIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred -HHHHHHHHcCCcEEEEEECcccC
Confidence 46666666789999999999998
No 41
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.35 E-value=1.2e-11 Score=116.67 Aligned_cols=127 Identities=22% Similarity=0.293 Sum_probs=76.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccc-cccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT-RRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~T-r~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.++|+++|.+|+|||||+|+|+|..+.+.+....| +.+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------- 42 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSID--------------------------------------- 42 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCcee---------------------------------------
Confidence 56899999999999999999999864332221111 11100
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
.. +. .+..++++|||||+...... ..............++..+|++++++ +++...... ..
T Consensus 43 ------------~~--~~-~~~~~~~iiDtpG~~~~~~~--~~~~e~~~~~~~~~~~~~~d~vi~v~-d~~~~~~~~-~~ 103 (174)
T cd01895 43 ------------VP--FE-YDGKKYTLIDTAGIRRKGKV--EEGIEKYSVLRTLKAIERADVVLLVI-DATEGITEQ-DL 103 (174)
T ss_pred ------------eE--EE-ECCeeEEEEECCCCccccch--hccHHHHHHHHHHHHHhhcCeEEEEE-eCCCCcchh-HH
Confidence 00 11 12245899999998765321 11111111122345677899877755 555544433 33
Q ss_pred HHHHHhCCCCCceEEEeccCcccCcc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.+.+.+...+.+.++|+||+|+.+..
T Consensus 104 ~~~~~~~~~~~~~iiv~nK~Dl~~~~ 129 (174)
T cd01895 104 RIAGLILEEGKALVIVVNKWDLVEKD 129 (174)
T ss_pred HHHHHHHhcCCCEEEEEeccccCCcc
Confidence 45555555678999999999998763
No 42
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.35 E-value=7.8e-12 Score=136.50 Aligned_cols=152 Identities=20% Similarity=0.246 Sum_probs=93.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccc-cccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
.|++||.+|+|||||+|+|+|...-..+. ..+||-+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~----------------------------------------- 39 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKY----------------------------------------- 39 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceE-----------------------------------------
Confidence 38999999999999999999976411111 112322211
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
..+.. +...+.+|||||+... ...+.+.+...+..+++.+|.++++ +++...+...+. .+
T Consensus 40 ------------~~~~~-~~~~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~~~ad~vl~v-vD~~~~~~~~d~-~i 99 (429)
T TIGR03594 40 ------------GDAEW-GGREFILIDTGGIEED-----DDGLDKQIREQAEIAIEEADVILFV-VDGREGLTPEDE-EI 99 (429)
T ss_pred ------------EEEEE-CCeEEEEEECCCCCCc-----chhHHHHHHHHHHHHHhhCCEEEEE-EeCCCCCCHHHH-HH
Confidence 11111 1245899999998632 2336677888899999999976665 455555544442 35
Q ss_pred HHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCC-CeEEEEeCChhhhhccCCH
Q 006928 196 AREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQH-PWVGIVNRSQADINKNVDM 254 (625)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~ 254 (625)
++.+...+.++++|+||+|+........++ ..++. .++.+......++.+..+.
T Consensus 100 ~~~l~~~~~piilVvNK~D~~~~~~~~~~~-----~~lg~~~~~~vSa~~g~gv~~ll~~ 154 (429)
T TIGR03594 100 AKWLRKSGKPVILVANKIDGKKEDAVAAEF-----YSLGFGEPIPISAEHGRGIGDLLDA 154 (429)
T ss_pred HHHHHHhCCCEEEEEECccCCcccccHHHH-----HhcCCCCeEEEeCCcCCChHHHHHH
Confidence 555555689999999999998654333222 22333 2445554444444444433
No 43
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.35 E-value=1.2e-11 Score=135.37 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=92.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccc-cccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.|.|++||.+|+|||||+|+|+|...-..+. ..+|+-.
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~----------------------------------------- 39 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDR----------------------------------------- 39 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccc-----------------------------------------
Confidence 3789999999999999999999986411111 1111111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
..-.+.. +...+.+|||||+.... .+....+...+..++..+|++|++| ++.......+.
T Consensus 40 ------------~~~~~~~-~~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~vv-d~~~~~~~~~~- 99 (435)
T PRK00093 40 ------------IYGEAEW-LGREFILIDTGGIEPDD-----DGFEKQIREQAELAIEEADVILFVV-DGRAGLTPADE- 99 (435)
T ss_pred ------------eEEEEEE-CCcEEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEE-ECCCCCCHHHH-
Confidence 1001111 12578999999987521 1255667777888999999877755 45444443332
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCC-eEEEEeCChhhhhccCCH
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHP-WVGIVNRSQADINKNVDM 254 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~ 254 (625)
.++..+...+.|+++|+||+|..+......++ +.++.+ ++.+......++.+..+.
T Consensus 100 ~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~-----~~lg~~~~~~iSa~~g~gv~~l~~~ 156 (435)
T PRK00093 100 EIAKILRKSNKPVILVVNKVDGPDEEADAYEF-----YSLGLGEPYPISAEHGRGIGDLLDA 156 (435)
T ss_pred HHHHHHHHcCCcEEEEEECccCccchhhHHHH-----HhcCCCCCEEEEeeCCCCHHHHHHH
Confidence 24444444589999999999976532222232 223333 455655555555544443
No 44
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=4e-11 Score=125.45 Aligned_cols=155 Identities=22% Similarity=0.234 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCc
Q 006928 6 SLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTD 85 (625)
Q Consensus 6 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~ 85 (625)
.++....-++++.+.+...+. + .+--.-++|+++|.||+|||||||+|+..+. .+|+..|-
T Consensus 241 ~~~~~~~l~d~v~s~l~~~~~-~-e~lq~gl~iaIvGrPNvGKSSLlNaL~~~dr-----sIVSpv~G------------ 301 (531)
T KOG1191|consen 241 IFIESLSLLDDVLSHLNKADE-I-ERLQSGLQIAIVGRPNVGKSSLLNALSREDR-----SIVSPVPG------------ 301 (531)
T ss_pred hhhHHHHHHHHHHHHHHhhhh-H-HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCc-----eEeCCCCC------------
Confidence 344444434456666654321 1 1112458999999999999999999999987 77777772
Q ss_pred ceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHH
Q 006928 86 YAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENM 165 (625)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~ 165 (625)
-+.|.|...+. ++...+.|+||.|+-+.... .++..--+-
T Consensus 302 -----------------------------------TTRDaiea~v~-~~G~~v~L~DTAGiRe~~~~----~iE~~gI~r 341 (531)
T KOG1191|consen 302 -----------------------------------TTRDAIEAQVT-VNGVPVRLSDTAGIREESND----GIEALGIER 341 (531)
T ss_pred -----------------------------------cchhhheeEee-cCCeEEEEEeccccccccCC----hhHHHhHHH
Confidence 12333444444 66688999999999872221 123322345
Q ss_pred HHHhhcCCCEEEEEEecCCCccccHHH--HHHHHHhC---------CCCCceEEEeccCcccCccc
Q 006928 166 VRSYVEKPSCIILAISPANQDIATSDA--IKLAREVD---------PTGERTFGVLTKLDLMDKGT 220 (625)
Q Consensus 166 v~~yi~~~~~iIl~v~~a~~d~~~~~~--l~l~~~~d---------~~~~rti~VltK~D~~~~~~ 220 (625)
.++-++.+|.|++ |++++..+..++. .+.+.... ....|.|.|.||.|+..+..
T Consensus 342 A~k~~~~advi~~-vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~ 406 (531)
T KOG1191|consen 342 ARKRIERADVILL-VVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP 406 (531)
T ss_pred HHHHHhhcCEEEE-EecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccc
Confidence 6778889996655 5555432333322 12222211 12378899999999988754
No 45
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.34 E-value=6.6e-12 Score=138.14 Aligned_cols=126 Identities=23% Similarity=0.271 Sum_probs=79.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccc-ccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~-~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
..+.|++||.+|+|||||+|+|+|.++...+ ...+|+-+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~--------------------------------------- 250 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPV--------------------------------------- 250 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcc---------------------------------------
Confidence 5689999999999999999999998752211 111222221
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHH-HHHhhcCCCEEEEEEecCCCccccHH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENM-VRSYVEKPSCIILAISPANQDIATSD 191 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~-v~~yi~~~~~iIl~v~~a~~d~~~~~ 191 (625)
...+.. +...+.||||||+.+..... ...+.+..+ ...+++++|++|+++ +++.....++
T Consensus 251 --------------~~~~~~-~~~~~~l~DTaG~~~~~~~~---~~~e~~~~~~~~~~i~~ad~vilV~-Da~~~~s~~~ 311 (472)
T PRK03003 251 --------------DSLIEL-GGKTWRFVDTAGLRRRVKQA---SGHEYYASLRTHAAIEAAEVAVVLI-DASEPISEQD 311 (472)
T ss_pred --------------eEEEEE-CCEEEEEEECCCcccccccc---chHHHHHHHHHHHHHhcCCEEEEEE-eCCCCCCHHH
Confidence 111111 22457899999986532221 112333333 345789999877755 5555554444
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
. .++..+...+.++|+|+||+|+.+.
T Consensus 312 ~-~~~~~~~~~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 312 Q-RVLSMVIEAGRALVLAFNKWDLVDE 337 (472)
T ss_pred H-HHHHHHHHcCCCEEEEEECcccCCh
Confidence 3 4566666678999999999999753
No 46
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.34 E-value=1.1e-11 Score=119.86 Aligned_cols=111 Identities=14% Similarity=0.229 Sum_probs=70.9
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~---~~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.||||||- +....+...|++.+|++|++++..+. .+- ..++..+....+.+.|+++|+||
T Consensus 50 ~~~~i~Dt~G~-------------~~~~~~~~~~~~~ad~~i~v~D~~~~-~s~~~~~~~~~~i~~~~~~~~piiiv~NK 115 (191)
T cd04112 50 VKLQIWDTAGQ-------------ERFRSVTHAYYRDAHALLLLYDITNK-ASFDNIRAWLTEIKEYAQEDVVIMLLGNK 115 (191)
T ss_pred EEEEEEeCCCc-------------HHHHHhhHHHccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCcEEEEEEc
Confidence 45889999992 22355667889999988776644332 111 22334455556667899999999
Q ss_pred CcccCccc----cHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHHHHHHhh
Q 006928 213 LDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKEREY 264 (625)
Q Consensus 213 ~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~ 264 (625)
+|+..... +...+. ...+.+|+.+...+..++.+....+.....+...
T Consensus 116 ~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~ 167 (191)
T cd04112 116 ADMSGERVVKREDGERLA----KEYGVPFMETSAKTGLNVELAFTAVAKELKHRKY 167 (191)
T ss_pred ccchhccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 99974322 112221 2234578888888877887777777766666543
No 47
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.34 E-value=1.2e-11 Score=116.26 Aligned_cols=148 Identities=14% Similarity=0.153 Sum_probs=87.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
...|+|+|.+|+|||||++++++.++.+.....++....
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~----------------------------------------- 41 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFA----------------------------------------- 41 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEE-----------------------------------------
Confidence 358999999999999999999998763222111111000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--- 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~--- 191 (625)
...+.+.+ ....+.++|+||.. ....+...|++.++++|+++...+ ...-..
T Consensus 42 ----------~~~~~~~~-~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~ 96 (165)
T cd01868 42 ----------TRSIQIDG-KTIKAQIWDTAGQE-------------RYRAITSAYYRGAVGALLVYDITK-KQTFENVER 96 (165)
T ss_pred ----------EEEEEECC-EEEEEEEEeCCChH-------------HHHHHHHHHHCCCCEEEEEEECcC-HHHHHHHHH
Confidence 00111111 12458899999942 235567788899998877665443 122222
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCcccc----HHHHHhCcccccCCCeEEEEeCChhhhhccC
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTN----ALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~----~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (625)
++..+++..+.+.|+++|.||+|+...... ...+.. ..+.+|+.+.+.+..++....
T Consensus 97 ~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 97 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE----KNGLSFIETSALDGTNVEEAF 157 (165)
T ss_pred HHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHH----HcCCEEEEEECCCCCCHHHHH
Confidence 333344445556899999999998754321 122221 234567777776665554433
No 48
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.33 E-value=1.1e-11 Score=117.06 Aligned_cols=152 Identities=14% Similarity=0.177 Sum_probs=85.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
...|+|||.+|+|||||++++++..+-+......+....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~----------------------------------------- 42 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG----------------------------------------- 42 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE-----------------------------------------
Confidence 458999999999999999999998763322211111110
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
...+.+.+ ....+.|+||||- +.+..+...|++.+|++++++. ++..-+..+..+
T Consensus 43 ----------~~~~~~~~-~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~il~v~d-~~~~~s~~~~~~ 97 (168)
T cd01866 43 ----------ARMITIDG-KQIKLQIWDTAGQ-------------ESFRSITRSYYRGAAGALLVYD-ITRRETFNHLTS 97 (168)
T ss_pred ----------EEEEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhccCCEEEEEEE-CCCHHHHHHHHH
Confidence 00111111 1235889999992 2346677889999999877655 443222233333
Q ss_pred HHHHh---CCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccC
Q 006928 195 LAREV---DPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (625)
Q Consensus 195 l~~~~---d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (625)
+..++ ...+.|.++|.||+|+........+.........+..|+.+...+..++.+..
T Consensus 98 ~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 98 WLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAF 158 (168)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 43333 23468899999999997533211111111011234456666655555554433
No 49
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.33 E-value=1.6e-11 Score=141.55 Aligned_cols=160 Identities=19% Similarity=0.248 Sum_probs=98.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.+|.|+++|.+|+|||||+|+|+|..+ .++...|.+.+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~-----~iv~~~pGvT~------------------------------------- 311 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE-----AVVEDTPGVTR------------------------------------- 311 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCCCeeE-------------------------------------
Confidence 578999999999999999999999764 23333332111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
+.+...... +...+.+|||||+.... +.+...+.+.+..+++.+|++|+++ +++..+...+.
T Consensus 312 ----------d~~~~~~~~-~~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~aD~iL~Vv-Da~~~~~~~d~- 373 (712)
T PRK09518 312 ----------DRVSYDAEW-AGTDFKLVDTGGWEADV-----EGIDSAIASQAQIAVSLADAVVFVV-DGQVGLTSTDE- 373 (712)
T ss_pred ----------EEEEEEEEE-CCEEEEEEeCCCcCCCC-----ccHHHHHHHHHHHHHHhCCEEEEEE-ECCCCCCHHHH-
Confidence 111111111 22468999999976422 2366677788888999999877655 55554544443
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCC-eEEEEeCChhhhhccCCHHHHH
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHP-WVGIVNRSQADINKNVDMIAAR 258 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~~~~ 258 (625)
.+++.+...+.|+|+|+||+|+........+.. .++.+ .+.+......++.++++.+...
T Consensus 374 ~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~-----~lg~~~~~~iSA~~g~GI~eLl~~i~~~ 434 (712)
T PRK09518 374 RIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFW-----KLGLGEPYPISAMHGRGVGDLLDEALDS 434 (712)
T ss_pred HHHHHHHhcCCCEEEEEECcccccchhhHHHHH-----HcCCCCeEEEECCCCCCchHHHHHHHHh
Confidence 356666667899999999999875432222221 12222 2344444445555555444433
No 50
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.33 E-value=1.3e-11 Score=116.59 Aligned_cols=153 Identities=14% Similarity=0.142 Sum_probs=86.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
..+|+++|++|+|||||++++++.+|-+ ...+.+..+.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~~----------------------------------------- 40 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDF----------------------------------------- 40 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccceE-----------------------------------------
Confidence 4689999999999999999999987622 1111111000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--- 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~--- 191 (625)
....+.+. .....+.++||||.. ....+...+++++|++|+++.. +...+-..
T Consensus 41 ---------~~~~~~~~-~~~~~l~l~D~~g~~-------------~~~~~~~~~~~~ad~~i~v~d~-~~~~s~~~~~~ 96 (167)
T cd01867 41 ---------KIRTIELD-GKKIKLQIWDTAGQE-------------RFRTITTAYYRGAMGIILVYDI-TDEKSFENIRN 96 (167)
T ss_pred ---------EEEEEEEC-CEEEEEEEEeCCchH-------------HHHHHHHHHhCCCCEEEEEEEC-cCHHHHHhHHH
Confidence 00011111 112468899999932 2355667889999988876654 32222222
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCC
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (625)
++..+....+.+.++++|.||+|+.+......+.........+.+|+.+...+..++++...
T Consensus 97 ~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 158 (167)
T cd01867 97 WMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFF 158 (167)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 23233334455789999999999985432111111111123345667666666555544433
No 51
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.32 E-value=2.6e-11 Score=132.57 Aligned_cols=127 Identities=22% Similarity=0.298 Sum_probs=81.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccc-cccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
+.+.|+|+|.+|+|||||+|+|+|.+..+.+... +|+.+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~---------------------------------------- 211 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDS---------------------------------------- 211 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEE----------------------------------------
Confidence 4679999999999999999999998743322211 12211
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
+...+. .+...+.+|||||+.+..... +..+.....-..++++.+|++|+ |+++..+...++.
T Consensus 212 -------------~~~~~~-~~~~~~~lvDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~il-ViD~~~~~~~~~~ 274 (435)
T PRK00093 212 -------------IDTPFE-RDGQKYTLIDTAGIRRKGKVT--EGVEKYSVIRTLKAIERADVVLL-VIDATEGITEQDL 274 (435)
T ss_pred -------------EEEEEE-ECCeeEEEEECCCCCCCcchh--hHHHHHHHHHHHHHHHHCCEEEE-EEeCCCCCCHHHH
Confidence 111111 133568999999987643321 11222112234568889998766 5566666665554
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+++.+...+.+.++|+||+|+.+.
T Consensus 275 -~i~~~~~~~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 275 -RIAGLALEAGRALVIVVNKWDLVDE 299 (435)
T ss_pred -HHHHHHHHcCCcEEEEEECccCCCH
Confidence 4666666678999999999999843
No 52
>COG2262 HflX GTPases [General function prediction only]
Probab=99.32 E-value=2.4e-11 Score=125.27 Aligned_cols=130 Identities=21% Similarity=0.340 Sum_probs=94.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
...|.|++||..|||||||+|+|+|...+-.+.-+.|--|+.=+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~------------------------------------ 233 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRR------------------------------------ 233 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeE------------------------------------
Confidence 58999999999999999999999999864455445565552221
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc--H
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--S 190 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~--~ 190 (625)
+.-++...+.+-||-|+++ +-|..+.+.++... .-+.++|.++++|+.++.++.. .
T Consensus 234 -----------------~~l~~g~~vlLtDTVGFI~----~LP~~LV~AFksTL-EE~~~aDlllhVVDaSdp~~~~~~~ 291 (411)
T COG2262 234 -----------------IELGDGRKVLLTDTVGFIR----DLPHPLVEAFKSTL-EEVKEADLLLHVVDASDPEILEKLE 291 (411)
T ss_pred -----------------EEeCCCceEEEecCccCcc----cCChHHHHHHHHHH-HHhhcCCEEEEEeecCChhHHHHHH
Confidence 3333456799999999997 45666777776653 3456899777765544433332 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGT 220 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 220 (625)
....++.++.-...|+|.|+||+|++....
T Consensus 292 ~v~~vL~el~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 292 AVEDVLAEIGADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred HHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence 345577888777899999999999987643
No 53
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.32 E-value=1.5e-11 Score=114.95 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=69.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+++|++|+|||||+++|+|.++.+......|..+...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSK----------------------------------------- 40 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEE-----------------------------------------
Confidence 589999999999999999999886332111111111000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AI 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~l 193 (625)
.+.+.+ ....+.++||||- .....++..+++.+|++|+++. .+..-.-.. ++
T Consensus 41 ----------~~~~~~-~~~~l~~~D~~G~-------------~~~~~~~~~~~~~~~~ii~v~d-~~~~~s~~~~~~~~ 95 (161)
T cd01861 41 ----------TMYLED-KTVRLQLWDTAGQ-------------ERFRSLIPSYIRDSSVAVVVYD-ITNRQSFDNTDKWI 95 (161)
T ss_pred ----------EEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhccCCEEEEEEE-CcCHHHHHHHHHHH
Confidence 001111 1135889999992 2235678889999998777654 432211122 22
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.......+.+.|+++|+||+|+...
T Consensus 96 ~~~~~~~~~~~~iilv~nK~D~~~~ 120 (161)
T cd01861 96 DDVRDERGNDVIIVLVGNKTDLSDK 120 (161)
T ss_pred HHHHHhCCCCCEEEEEEEChhcccc
Confidence 2222222335899999999999644
No 54
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.32 E-value=1.4e-11 Score=115.29 Aligned_cols=68 Identities=24% Similarity=0.339 Sum_probs=42.3
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH--HHHHHHHHhCCCCCceEEEecc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--~~l~l~~~~d~~~~rti~VltK 212 (625)
...+.+|||||.. .+......++..+|++++++ +++.++..+ +.+.+++... ..+.++|+||
T Consensus 50 ~~~~~~~DtpG~~-------------~~~~~~~~~~~~ad~ii~V~-d~~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK 113 (164)
T cd04171 50 GKRLGFIDVPGHE-------------KFIKNMLAGAGGIDLVLLVV-AADEGIMPQTREHLEILELLG--IKRGLVVLTK 113 (164)
T ss_pred CcEEEEEECCChH-------------HHHHHHHhhhhcCCEEEEEE-ECCCCccHhHHHHHHHHHHhC--CCcEEEEEEC
Confidence 3579999999942 12344556788999877755 454433222 2223333221 2489999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+...
T Consensus 114 ~Dl~~~ 119 (164)
T cd04171 114 ADLVDE 119 (164)
T ss_pred ccccCH
Confidence 999764
No 55
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.31 E-value=7.2e-12 Score=116.30 Aligned_cols=77 Identities=17% Similarity=0.326 Sum_probs=50.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
..+.+|||||+..... .....+...+..++..+|.+++++. +.......+. .+.+.+...+.|+++|+||+|+
T Consensus 45 ~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~d~ii~v~d-~~~~~~~~~~-~~~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 45 REFILIDTGGIEPDDE-----GISKEIREQAELAIEEADVILFVVD-GREGLTPADE-EIAKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred eEEEEEECCCCCCchh-----HHHHHHHHHHHHHHHhCCEEEEEEe-ccccCCccHH-HHHHHHHhcCCCEEEEEECccc
Confidence 5689999999876432 2344455566778889998777554 4433332222 2444444457999999999999
Q ss_pred cCcc
Q 006928 216 MDKG 219 (625)
Q Consensus 216 ~~~~ 219 (625)
....
T Consensus 118 ~~~~ 121 (157)
T cd01894 118 IKEE 121 (157)
T ss_pred CChH
Confidence 8653
No 56
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.31 E-value=1.8e-11 Score=115.22 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=58.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~---~~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.++||||.. ....+...|++++|+++++++..+. -+. .+++..++...+...|.++|.||
T Consensus 50 ~~~~l~Dt~g~~-------------~~~~~~~~~~~~~~~~l~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK 115 (165)
T cd01865 50 VKLQIWDTAGQE-------------RYRTITTAYYRGAMGFILMYDITNE-ESFNAVQDWSTQIKTYSWDNAQVILVGNK 115 (165)
T ss_pred EEEEEEECCChH-------------HHHHHHHHHccCCcEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCCEEEEEEC
Confidence 458899999932 2355677889999988776654332 111 22333334444456789999999
Q ss_pred CcccCcccc-HHHHHhCcccccCCCeEEEEeCChhhhhccCC
Q 006928 213 LDLMDKGTN-ALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (625)
Q Consensus 213 ~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (625)
+|+.+.... ..+..+ -...++.+|+.+.+.+..++.+..+
T Consensus 116 ~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 116 CDMEDERVVSSERGRQ-LADQLGFEFFEASAKENINVKQVFE 156 (165)
T ss_pred cccCcccccCHHHHHH-HHHHcCCEEEEEECCCCCCHHHHHH
Confidence 999765321 111110 0112334566666555555544433
No 57
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.31 E-value=3.9e-11 Score=111.25 Aligned_cols=120 Identities=28% Similarity=0.348 Sum_probs=72.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccc-cccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
.|+++|++|+||||++|+|.|..+...+... +|..+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~------------------------------------------- 39 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDV------------------------------------------- 39 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccce-------------------------------------------
Confidence 6999999999999999999998642211111 11111
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
....+. .....++++||||+...... ........+..++.++|++++++ +++......+. ++
T Consensus 40 ----------~~~~~~-~~~~~~~i~DtpG~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~v~-d~~~~~~~~~~-~~ 101 (157)
T cd04164 40 ----------IEESID-IGGIPVRLIDTAGIRETEDE-----IEKIGIERAREAIEEADLVLFVI-DASRGLDEEDL-EI 101 (157)
T ss_pred ----------EEEEEE-eCCEEEEEEECCCcCCCcch-----HHHHHHHHHHHHHhhCCEEEEEE-ECCCCCCHHHH-HH
Confidence 000111 12346899999998654321 22222234556678899776654 55543333333 23
Q ss_pred HHHhCCCCCceEEEeccCcccCcc
Q 006928 196 AREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
... ..+.++++|+||+|+.+..
T Consensus 102 ~~~--~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 102 LEL--PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred HHh--hcCCCEEEEEEchhcCCcc
Confidence 333 3478999999999998654
No 58
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.31 E-value=3e-11 Score=111.49 Aligned_cols=78 Identities=22% Similarity=0.363 Sum_probs=51.2
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
..+++++||||+...... ..........++..+|.+++++. +.......... +.......+.+.++|+||+|
T Consensus 44 ~~~~~~~Dt~g~~~~~~~------~~~~~~~~~~~~~~~d~il~v~~-~~~~~~~~~~~-~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGL------GREREELARRVLERADLILFVVD-ADLRADEEEEK-LLELLRERGKPVLLVLNKID 115 (163)
T ss_pred CCcEEEEECCCCCccccc------hhhHHHHHHHHHHhCCEEEEEEe-CCCCCCHHHHH-HHHHHHhcCCeEEEEEEccc
Confidence 478999999998865433 11113456778889998777554 44333333222 34444456899999999999
Q ss_pred ccCccc
Q 006928 215 LMDKGT 220 (625)
Q Consensus 215 ~~~~~~ 220 (625)
+.....
T Consensus 116 ~~~~~~ 121 (163)
T cd00880 116 LLPEEE 121 (163)
T ss_pred cCChhh
Confidence 987643
No 59
>PRK04213 GTP-binding protein; Provisional
Probab=99.30 E-value=2.1e-11 Score=118.85 Aligned_cols=124 Identities=22% Similarity=0.371 Sum_probs=73.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
..+.|+++|.+|+|||||+|+|+|..+ +.+.. .+|+.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~---------------------------------------- 46 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKP---------------------------------------- 46 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCc----------------------------------------
Confidence 568999999999999999999999864 32211 111111
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc-C---CCEEEEEEecCCCccc
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE-K---PSCIILAISPANQDIA 188 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~-~---~~~iIl~v~~a~~d~~ 188 (625)
..+.+ .++++|||||+...... ++...+.++.++..|+. . ++.+++++ ++.....
T Consensus 47 -------------~~~~~-----~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~-d~~~~~~ 105 (201)
T PRK04213 47 -------------NHYDW-----GDFILTDLPGFGFMSGV--PKEVQEKIKDEIVRYIEDNADRILAAVLVV-DGKSFIE 105 (201)
T ss_pred -------------eEEee-----cceEEEeCCcccccccc--CHHHHHHHHHHHHHHHHhhhhhheEEEEEE-eCccccc
Confidence 11111 15899999997433221 22235566777777764 3 45555544 4432111
Q ss_pred ----------cHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 189 ----------TSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 189 ----------~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
......+...+...+.|.++|+||+|+.+..
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 106 IIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR 146 (201)
T ss_pred cccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH
Confidence 0111223333334578999999999987543
No 60
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.30 E-value=8.5e-12 Score=118.33 Aligned_cols=80 Identities=24% Similarity=0.327 Sum_probs=44.8
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-----cccHH---HHHHHHHhCC-----
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-----IATSD---AIKLAREVDP----- 201 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-----~~~~~---~l~l~~~~d~----- 201 (625)
...+.|+||||+....... +.+ ......+++.+|++++++...+.+ ....+ ..........
T Consensus 43 ~~~~~i~DtpG~~~~~~~~--~~~----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (176)
T cd01881 43 GARIQVADIPGLIEGASEG--RGL----GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILG 116 (176)
T ss_pred CCeEEEEeccccchhhhcC--CCc----cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHH
Confidence 4678999999986432221 111 112355677899877766544331 11111 1111121121
Q ss_pred --CCCceEEEeccCcccCccc
Q 006928 202 --TGERTFGVLTKLDLMDKGT 220 (625)
Q Consensus 202 --~~~rti~VltK~D~~~~~~ 220 (625)
.+.|.++|+||+|+.....
T Consensus 117 ~~~~~p~ivv~NK~Dl~~~~~ 137 (176)
T cd01881 117 LLTAKPVIYVLNKIDLDDAEE 137 (176)
T ss_pred HHhhCCeEEEEEchhcCchhH
Confidence 3689999999999986543
No 61
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.29 E-value=2.6e-11 Score=113.53 Aligned_cols=69 Identities=22% Similarity=0.213 Sum_probs=45.1
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHH---hCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLARE---VDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~---~d~~~~rti~VltK 212 (625)
..+.++|+||. .....+...+++.+|++|+++...+ ..+.....++... ....+.|+++|+||
T Consensus 49 ~~~~l~D~~G~-------------~~~~~~~~~~~~~~d~~ilv~d~~~-~~s~~~~~~~l~~~~~~~~~~~pivvv~nK 114 (164)
T smart00175 49 VKLQIWDTAGQ-------------ERFRSITSSYYRGAVGALLVYDITN-RESFENLKNWLKELREYADPNVVIMLVGNK 114 (164)
T ss_pred EEEEEEECCCh-------------HHHHHHHHHHhCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence 36789999993 2234667888999998888765443 2222222223322 22247899999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+...
T Consensus 115 ~D~~~~ 120 (164)
T smart00175 115 SDLEDQ 120 (164)
T ss_pred hhcccc
Confidence 998753
No 62
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.29 E-value=2.9e-11 Score=117.56 Aligned_cols=157 Identities=16% Similarity=0.133 Sum_probs=84.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
+|+|+|++|+|||||++++++.+| |....+.+.......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~~---------------------------------------- 40 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYRP---------------------------------------- 40 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCcccccccee----------------------------------------
Confidence 689999999999999999999876 322221111110000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~ 196 (625)
.+.+ ......+.|+||||....+.. ...........+++.+|++|++++..+ ..+...+..+.
T Consensus 41 ----------~i~~-~~~~~~l~i~Dt~G~~~~~~~-----~~~e~~~~~~~~~~~ad~iilv~D~~~-~~S~~~~~~~~ 103 (198)
T cd04142 41 ----------AVVL-SGRVYDLHILDVPNMQRYPGT-----AGQEWMDPRFRGLRNSRAFILVYDICS-PDSFHYVKLLR 103 (198)
T ss_pred ----------EEEE-CCEEEEEEEEeCCCcccCCcc-----chhHHHHHHHhhhccCCEEEEEEECCC-HHHHHHHHHHH
Confidence 0001 111245789999997543211 122223345567899998887665443 22111122222
Q ss_pred ---HHh---CCCCCceEEEeccCcccCccccHHHHHhCc-ccccCCCeEEEEeCChhhhhcc
Q 006928 197 ---REV---DPTGERTFGVLTKLDLMDKGTNALEVLEGR-SYRLQHPWVGIVNRSQADINKN 251 (625)
Q Consensus 197 ---~~~---d~~~~rti~VltK~D~~~~~~~~~~~l~~~-~~~l~~g~~~v~~~s~~~~~~~ 251 (625)
... ...+.|+++|.||+|+........+.+... ....+.+|+.+...+..++...
T Consensus 104 ~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~l 165 (198)
T cd04142 104 QQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLL 165 (198)
T ss_pred HHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHH
Confidence 222 245789999999999965422111111100 1123456777766665555443
No 63
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.28 E-value=2.2e-11 Score=139.78 Aligned_cols=160 Identities=20% Similarity=0.282 Sum_probs=94.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
..+|+++|.+|+|||||+|+|+|.+. .++ +.|-.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vg-----n~pGv---------------------------------------- 36 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVG-----NWAGV---------------------------------------- 36 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccC-----CCCCc----------------------------------------
Confidence 35799999999999999999999864 221 11210
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCCCccccHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi--~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
+-+...-.+ ..+...+.+|||||+++......+....+ .+...|+ .++|.+|+++ +++. . ...
T Consensus 37 -------Tve~k~g~~-~~~~~~i~lvDtPG~ysl~~~~~~~s~~E---~i~~~~l~~~~aD~vI~Vv-Dat~-l--er~ 101 (772)
T PRK09554 37 -------TVERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLDE---QIACHYILSGDADLLINVV-DASN-L--ERN 101 (772)
T ss_pred -------eEeeEEEEE-EcCceEEEEEECCCccccccccccccHHH---HHHHHHHhccCCCEEEEEe-cCCc-c--hhh
Confidence 000011111 12335789999999987543222222232 3445565 4799877655 4443 1 223
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHH
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (625)
+.+..++...+.|+++|+||+|+.++.....+. +.-...++.+++.+..+..+++++..+...
T Consensus 102 l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~-~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~ 164 (772)
T PRK09554 102 LYLTLQLLELGIPCIVALNMLDIAEKQNIRIDI-DALSARLGCPVIPLVSTRGRGIEALKLAID 164 (772)
T ss_pred HHHHHHHHHcCCCEEEEEEchhhhhccCcHHHH-HHHHHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence 345556666789999999999997543321221 111234556677777776666655554443
No 64
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=9.7e-10 Score=119.01 Aligned_cols=171 Identities=19% Similarity=0.284 Sum_probs=109.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+-..|++.|+.|+||||++||++..++||.|.|+||.|-+++. .+++...+...-+.+ .-.|...+...+..
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Ve--gadG~e~vl~~~~s~--ek~d~~ti~~~~ha---- 179 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVE--GADGAEAVLATEGSE--EKIDMKTINQLAHA---- 179 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeec--ccCCcceeeccCCCc--ccccHHHHhHHHHh----
Confidence 3457999999999999999999999999999999999998886 333333333222211 11222222211111
Q ss_pred hhCCCCccccccEEEEEecCCC------CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc
Q 006928 114 ITGKSKQISNIPIQLSIYSPNV------VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI 187 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~------~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~ 187 (625)
+... +. ....--+.|+.|+. -++.++|.||+...+.. ...+.++..++|..|+++.+.+ -+
T Consensus 180 L~~~-~~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~----------tswid~~cldaDVfVlV~NaEn-tl 246 (749)
T KOG0448|consen 180 LKPD-KD-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSEL----------TSWIDSFCLDADVFVLVVNAEN-TL 246 (749)
T ss_pred cCcc-cc-cCcceEEEEEecCccchhhhccceeccCCCCCCchhh----------hHHHHHHhhcCCeEEEEecCcc-Hh
Confidence 1000 00 12234456777665 38999999999865433 6678899999998777554443 34
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHH
Q 006928 188 ATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVL 226 (625)
Q Consensus 188 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l 226 (625)
+. .+.++...+......++++.||+|......++.+.+
T Consensus 247 t~-sek~Ff~~vs~~KpniFIlnnkwDasase~ec~e~V 284 (749)
T KOG0448|consen 247 TL-SEKQFFHKVSEEKPNIFILNNKWDASASEPECKEDV 284 (749)
T ss_pred HH-HHHHHHHHhhccCCcEEEEechhhhhcccHHHHHHH
Confidence 33 344566766665555667778999987766654433
No 65
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.28 E-value=3.4e-11 Score=112.69 Aligned_cols=149 Identities=15% Similarity=0.150 Sum_probs=84.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+|+|++++|||||+++|++..+-+......+...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~-------------------------------------------- 37 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEF-------------------------------------------- 37 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeE--------------------------------------------
Confidence 689999999999999999998876332211111000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AI 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~l 193 (625)
....+.+. .....+.|+|+||.. ....+...+++++|++|+++...+ ..+... ++
T Consensus 38 -------~~~~~~~~-~~~~~l~l~D~~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~ 95 (161)
T cd04113 38 -------GSKIIRVG-GKRVKLQIWDTAGQE-------------RFRSVTRSYYRGAAGALLVYDITN-RTSFEALPTWL 95 (161)
T ss_pred -------EEEEEEEC-CEEEEEEEEECcchH-------------HHHHhHHHHhcCCCEEEEEEECCC-HHHHHHHHHHH
Confidence 00011111 122468899999932 235567788999998888665443 222222 22
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhcc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKN 251 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (625)
...+.....+.+.++|.||+|+........+.........+..|+.+...+..++.+.
T Consensus 96 ~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 96 SDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEA 153 (161)
T ss_pred HHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 2333344457899999999999764321111111111122355666666655555443
No 66
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.28 E-value=7.4e-11 Score=136.02 Aligned_cols=126 Identities=25% Similarity=0.295 Sum_probs=80.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcc-cccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFL-PRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~l-P~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
+.|.|+++|.+|+|||||+|+|+|.++. +.....+|+-+...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~------------------------------------- 491 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDE------------------------------------- 491 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCccee-------------------------------------
Confidence 5689999999999999999999998751 11111122222110
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHH-HHHhhcCCCEEEEEEecCCCccccHH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENM-VRSYVEKPSCIILAISPANQDIATSD 191 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~-v~~yi~~~~~iIl~v~~a~~d~~~~~ 191 (625)
.+.+ +..+++||||||+.+.... ....+....+ ...+++.+|+++++ .+++.....++
T Consensus 492 --------------~~~~---~~~~~~liDTaG~~~~~~~---~~~~e~~~~~r~~~~i~~advvilV-iDat~~~s~~~ 550 (712)
T PRK09518 492 --------------IVEI---DGEDWLFIDTAGIKRRQHK---LTGAEYYSSLRTQAAIERSELALFL-FDASQPISEQD 550 (712)
T ss_pred --------------EEEE---CCCEEEEEECCCcccCccc---chhHHHHHHHHHHHHhhcCCEEEEE-EECCCCCCHHH
Confidence 1111 2346889999998754322 1112222222 35678899987764 56665555554
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
. .++..+...+.++|+|+||+|+.+.
T Consensus 551 ~-~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 551 L-KVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred H-HHHHHHHHcCCCEEEEEEchhcCCh
Confidence 3 3566666678999999999999864
No 67
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.28 E-value=4.4e-11 Score=112.69 Aligned_cols=149 Identities=13% Similarity=0.182 Sum_probs=84.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+++|++++|||||++++.+..|.+... ..+.....
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~~~~~~-~t~~~~~~------------------------------------------ 40 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKFMADCP-HTIGVEFG------------------------------------------ 40 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCC-cccceeEE------------------------------------------
Confidence 69999999999999999999887632211 11111000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAI 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~~l 193 (625)
...+.+.+ ....+.++||||. +....+...|++++|++|+++...+. .+-. .++
T Consensus 41 --------~~~~~~~~-~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~~~~ilv~d~~~~-~s~~~~~~~~ 97 (166)
T cd04122 41 --------TRIIEVNG-QKIKLQIWDTAGQ-------------ERFRAVTRSYYRGAAGALMVYDITRR-STYNHLSSWL 97 (166)
T ss_pred --------EEEEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhcCCCEEEEEEECCCH-HHHHHHHHHH
Confidence 00111111 1246889999993 23356678899999998887655432 2112 233
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhcc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKN 251 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (625)
...+.....+.+.++|.||+|+........+.........+..|+.+...+..++.+.
T Consensus 98 ~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 98 TDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred HHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 3333344446789999999999754321111111001122345666666655555443
No 68
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.28 E-value=4.7e-11 Score=112.42 Aligned_cols=104 Identities=15% Similarity=0.197 Sum_probs=59.1
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK 212 (625)
..+.++||||.. ....+...|++++|++|++++..+. -+... ++...+.....+.+.++|.||
T Consensus 51 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~ii~v~d~~~~-~s~~~l~~~~~~~~~~~~~~~~~iiv~nK 116 (166)
T cd01869 51 IKLQIWDTAGQE-------------RFRTITSSYYRGAHGIIIVYDVTDQ-ESFNNVKQWLQEIDRYASENVNKLLVGNK 116 (166)
T ss_pred EEEEEEECCCcH-------------hHHHHHHHHhCcCCEEEEEEECcCH-HHHHhHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 357899999932 2356677889999998887654432 11122 222333333346899999999
Q ss_pred CcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCC
Q 006928 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (625)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (625)
+|+........+.........+.+|+.+......++.+...
T Consensus 117 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 157 (166)
T cd01869 117 CDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFM 157 (166)
T ss_pred hhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHH
Confidence 99865432111111111122344566666666555554433
No 69
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.27 E-value=6.1e-11 Score=116.11 Aligned_cols=123 Identities=24% Similarity=0.342 Sum_probs=83.6
Q ss_pred CCCeEE-EECCCCCCHHHHHHHhhCCCccccc-ccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006928 34 ALPSVA-VVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (625)
Q Consensus 34 ~lP~Iv-vvG~~saGKSSllnaL~g~~~lP~~-~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (625)
.-|..+ ++|..|+|||||+|||++.+.-|+. -+.||+-++...
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~----------------------------------- 81 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR----------------------------------- 81 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH-----------------------------------
Confidence 355554 9999999999999999976665655 344555552221
Q ss_pred hhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccH
Q 006928 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATS 190 (625)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~~ 190 (625)
.+.+...|+|+||||+.+...+ ....+..+..|+.+.| ++|++.++.. ++.+.
T Consensus 82 -------------------~~~~~~~l~lwDtPG~gdg~~~------D~~~r~~~~d~l~~~D-LvL~l~~~~draL~~d 135 (296)
T COG3596 82 -------------------LSYDGENLVLWDTPGLGDGKDK------DAEHRQLYRDYLPKLD-LVLWLIKADDRALGTD 135 (296)
T ss_pred -------------------hhccccceEEecCCCcccchhh------hHHHHHHHHHHhhhcc-EEEEeccCCCccccCC
Confidence 1112367999999999875433 3445788899999999 4566666654 33333
Q ss_pred HHHHHHHHhC--CCCCceEEEeccCcccCcc
Q 006928 191 DAIKLAREVD--PTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 191 ~~l~l~~~~d--~~~~rti~VltK~D~~~~~ 219 (625)
. .+++.+- ..+.|+++|+|.+|...++
T Consensus 136 ~--~f~~dVi~~~~~~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 136 E--DFLRDVIILGLDKRVLFVVTQADRAEPG 164 (296)
T ss_pred H--HHHHHHHHhccCceeEEEEehhhhhccc
Confidence 2 2444432 2238999999999998776
No 70
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.27 E-value=2.5e-11 Score=113.65 Aligned_cols=69 Identities=25% Similarity=0.268 Sum_probs=43.5
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH---HHHh-CCCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL---AREV-DPTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l---~~~~-d~~~~rti~Vlt 211 (625)
..+.|+||||..+ ...+...|++++|+++++++..+. -+-.....+ +... ...+.|.++|.|
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~n 114 (163)
T cd04136 49 CMLEILDTAGTEQ-------------FTAMRDLYIKNGQGFVLVYSITSQ-SSFNDLQDLREQILRVKDTENVPMVLVGN 114 (163)
T ss_pred EEEEEEECCCccc-------------cchHHHHHhhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 4578999999432 245567788999988876654331 111222222 2222 334689999999
Q ss_pred cCcccCc
Q 006928 212 KLDLMDK 218 (625)
Q Consensus 212 K~D~~~~ 218 (625)
|+|+.+.
T Consensus 115 K~Dl~~~ 121 (163)
T cd04136 115 KCDLEDE 121 (163)
T ss_pred Ccccccc
Confidence 9998754
No 71
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.27 E-value=5.3e-11 Score=111.32 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=44.6
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHHHHHHH---hCCCCCceEE
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLARE---VDPTGERTFG 208 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~~l~l~~~---~d~~~~rti~ 208 (625)
...+.++||||..+ ...+...|++++|++|++++..+ ..... ..+..+.. +...+.|+++
T Consensus 44 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ii 109 (162)
T cd04157 44 NLSFTAFDMSGQGK-------------YRGLWEHYYKNIQGIIFVIDSSD-RLRLVVVKDELELLLNHPDIKHRRVPILF 109 (162)
T ss_pred CEEEEEEECCCCHh-------------hHHHHHHHHccCCEEEEEEeCCc-HHHHHHHHHHHHHHHcCcccccCCCCEEE
Confidence 35689999999432 35667789999998887665433 22111 12222211 1234789999
Q ss_pred EeccCcccCc
Q 006928 209 VLTKLDLMDK 218 (625)
Q Consensus 209 VltK~D~~~~ 218 (625)
|+||+|+.+.
T Consensus 110 v~NK~Dl~~~ 119 (162)
T cd04157 110 FANKMDLPDA 119 (162)
T ss_pred EEeCccccCC
Confidence 9999999754
No 72
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.26 E-value=3e-11 Score=112.37 Aligned_cols=73 Identities=22% Similarity=0.360 Sum_probs=45.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~--~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 213 (625)
.++.||||||....... +. . ..+...|+. .+|++|+++. ++. ... ...+..++...+.+.++|+||+
T Consensus 43 ~~~~liDtpG~~~~~~~--~~--~---~~~~~~~~~~~~~d~vi~v~d-~~~-~~~--~~~~~~~~~~~~~~~iiv~NK~ 111 (158)
T cd01879 43 KEIEIVDLPGTYSLSPY--SE--D---EKVARDFLLGEKPDLIVNVVD-ATN-LER--NLYLTLQLLELGLPVVVALNMI 111 (158)
T ss_pred eEEEEEECCCccccCCC--Ch--h---HHHHHHHhcCCCCcEEEEEee-CCc-chh--HHHHHHHHHHcCCCEEEEEehh
Confidence 47899999998654322 11 1 244556664 8998777554 443 111 1223444444578999999999
Q ss_pred cccCcc
Q 006928 214 DLMDKG 219 (625)
Q Consensus 214 D~~~~~ 219 (625)
|+.+..
T Consensus 112 Dl~~~~ 117 (158)
T cd01879 112 DEAEKR 117 (158)
T ss_pred hhcccc
Confidence 997653
No 73
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.26 E-value=2.9e-11 Score=113.28 Aligned_cols=69 Identities=20% Similarity=0.208 Sum_probs=44.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH----HHHHhCCCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK----LAREVDPTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~----l~~~~d~~~~rti~Vlt 211 (625)
..+.++||||..+ ...+...|++.+|++++++...+ ..+...... +.+.....+.|+++|+|
T Consensus 50 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~~piiiv~N 115 (164)
T cd04145 50 AILDILDTAGQEE-------------FSAMREQYMRTGEGFLLVFSVTD-RGSFEEVDKFHTQILRVKDRDEFPMILVGN 115 (164)
T ss_pred EEEEEEECCCCcc-------------hhHHHHHHHhhCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCCCEEEEee
Confidence 4588999999432 24567788999998888665443 211112211 22323445789999999
Q ss_pred cCcccCc
Q 006928 212 KLDLMDK 218 (625)
Q Consensus 212 K~D~~~~ 218 (625)
|+|+.+.
T Consensus 116 K~Dl~~~ 122 (164)
T cd04145 116 KADLEHQ 122 (164)
T ss_pred Ccccccc
Confidence 9998754
No 74
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.26 E-value=4.8e-11 Score=112.05 Aligned_cols=115 Identities=17% Similarity=0.275 Sum_probs=69.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+|+|++++|||||++++.+..+.+. ..|+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~------~~~t~------------------------------------------ 33 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSK------YLPTI------------------------------------------ 33 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC------CCCcc------------------------------------------
Confidence 699999999999999999999886221 11110
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAI 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~~l 193 (625)
+++.....+.+.+ ....+.|+||||.. ....+...|++.+|++|+++...+. -+.. .++
T Consensus 34 ---~~~~~~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~D~~~~-~s~~~~~~~~ 95 (168)
T cd04119 34 ---GIDYGVKKVSVRN-KEVRVNFFDLSGHP-------------EYLEVRNEFYKDTQGVLLVYDVTDR-QSFEALDSWL 95 (168)
T ss_pred ---ceeEEEEEEEECC-eEEEEEEEECCccH-------------HHHHHHHHHhccCCEEEEEEECCCH-HHHHhHHHHH
Confidence 0000001111111 22568999999942 2245667788999998886654332 1112 222
Q ss_pred HHHHH-hCC----CCCceEEEeccCcccC
Q 006928 194 KLARE-VDP----TGERTFGVLTKLDLMD 217 (625)
Q Consensus 194 ~l~~~-~d~----~~~rti~VltK~D~~~ 217 (625)
..... ..+ .+.|.++|.||+|+.+
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 96 KEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred HHHHHhccccccCCCceEEEEEEchhccc
Confidence 22222 222 4688999999999974
No 75
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.26 E-value=3.4e-11 Score=111.49 Aligned_cols=114 Identities=22% Similarity=0.232 Sum_probs=69.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
+|+++|.+++||||++++|.+..+.+.... |..+ .
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~--t~~~---~---------------------------------------- 36 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKS--TIGV---D---------------------------------------- 36 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCC--ceee---e----------------------------------------
Confidence 699999999999999999999876332111 1000 0
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AI 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~l 193 (625)
.....+.+. ....++.++|+||.. ....+...+++++|++|+++.... .-.... ++
T Consensus 37 ------~~~~~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~~ 95 (159)
T cd00154 37 ------FKSKTIEID-GKTVKLQIWDTAGQE-------------RFRSITPSYYRGAHGAILVYDITN-RESFENLDKWL 95 (159)
T ss_pred ------eEEEEEEEC-CEEEEEEEEecCChH-------------HHHHHHHHHhcCCCEEEEEEECCC-HHHHHHHHHHH
Confidence 000111111 112468899999942 235577888999998877665433 212222 22
Q ss_pred HHHHHhCCCCCceEEEeccCccc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLM 216 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~ 216 (625)
.........+.++++|+||+|+.
T Consensus 96 ~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 96 KELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHhCCCCCcEEEEEEccccc
Confidence 22333333468999999999997
No 76
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.26 E-value=4.4e-11 Score=113.00 Aligned_cols=115 Identities=17% Similarity=0.285 Sum_probs=69.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+|+|.+++|||||+++|++..+.+.....++..+..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~------------------------------------------ 39 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT------------------------------------------ 39 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEE------------------------------------------
Confidence 68999999999999999999987532211111110000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH---H
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA---I 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~---l 193 (625)
..+.+.+ ....+.++|+||.. ....+...|++++|++|+++...+ .-..... .
T Consensus 40 ---------~~~~~~~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~~~ 95 (172)
T cd01862 40 ---------KEVTVDD-KLVTLQIWDTAGQE-------------RFQSLGVAFYRGADCCVLVYDVTN-PKSFESLDSWR 95 (172)
T ss_pred ---------EEEEECC-EEEEEEEEeCCChH-------------HHHhHHHHHhcCCCEEEEEEECCC-HHHHHHHHHHH
Confidence 0011111 12357899999932 235567789999998887665432 2111111 1
Q ss_pred -HHHHHhC---CCCCceEEEeccCcccC
Q 006928 194 -KLAREVD---PTGERTFGVLTKLDLMD 217 (625)
Q Consensus 194 -~l~~~~d---~~~~rti~VltK~D~~~ 217 (625)
.+..... +.+.|+++|+||+|+..
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 96 DEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHHHHhcCccCCCCceEEEEEECccccc
Confidence 1233333 34789999999999985
No 77
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.26 E-value=5.2e-11 Score=115.74 Aligned_cols=121 Identities=27% Similarity=0.335 Sum_probs=70.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
..|+++|..|+|||||+|+|+|..+ |....+.+... . .+ .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~-~~~~~~~~~~~---~--~t-------------------------------~--- 41 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH-EEEGAAPTGVV---E--TT-------------------------------M--- 41 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC-CCCCccccCcc---c--cc-------------------------------c---
Confidence 3699999999999999999999764 32111111100 0 00 0
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
.. ..+..+..+++++|||||+...... ..+.++.+ .+.+.|.+++ +.+ .++...+. .+
T Consensus 42 --------~~--~~~~~~~~~~l~l~DtpG~~~~~~~-----~~~~l~~~---~~~~~d~~l~-v~~--~~~~~~d~-~~ 99 (197)
T cd04104 42 --------KR--TPYPHPKFPNVTLWDLPGIGSTAFP-----PDDYLEEM---KFSEYDFFII-ISS--TRFSSNDV-KL 99 (197)
T ss_pred --------Cc--eeeecCCCCCceEEeCCCCCcccCC-----HHHHHHHh---CccCcCEEEE-EeC--CCCCHHHH-HH
Confidence 00 0012233468999999998754221 12212211 2456786655 433 34544443 35
Q ss_pred HHHhCCCCCceEEEeccCcccCc
Q 006928 196 AREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++.+...+.++++|+||+|+..+
T Consensus 100 ~~~l~~~~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 100 AKAIQCMGKKFYFVRTKVDRDLS 122 (197)
T ss_pred HHHHHHhCCCEEEEEecccchhh
Confidence 55555568899999999999643
No 78
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.26 E-value=1e-10 Score=117.18 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=78.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
.-.+|+|+|.+|+|||||+|+|+|....+++.. .+|+.+....
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~------------------------------------ 73 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVS------------------------------------ 73 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEE------------------------------------
Confidence 566999999999999999999999876554422 2333332211
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCC-cccc
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQ-DIAT 189 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~--~~~~iIl~v~~a~~-d~~~ 189 (625)
. ..+...+++|||||+...... ....+.+.+.+..|++ ..++ ||+|...+. .+..
T Consensus 74 -----------------~-~~~g~~i~vIDTPGl~~~~~~---~~~~~~~~~~I~~~l~~~~idv-IL~V~rlD~~r~~~ 131 (249)
T cd01853 74 -----------------G-TVDGFKLNIIDTPGLLESVMD---QRVNRKILSSIKRYLKKKTPDV-VLYVDRLDMYRRDY 131 (249)
T ss_pred -----------------E-EECCeEEEEEECCCcCcchhh---HHHHHHHHHHHHHHHhccCCCE-EEEEEcCCCCCCCH
Confidence 0 012356899999999865321 1133445566777886 4665 555654432 2223
Q ss_pred H--HHHHHHHHhCC--CCCceEEEeccCcccCcc
Q 006928 190 S--DAIKLAREVDP--TGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 190 ~--~~l~l~~~~d~--~~~rti~VltK~D~~~~~ 219 (625)
. ..++..++.-. .-.++++|+||+|...+.
T Consensus 132 ~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 132 LDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 3 23333333211 125799999999998664
No 79
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.25 E-value=2.7e-11 Score=113.72 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=55.4
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH---HH-HHHHhCCCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA---IK-LAREVDPTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~---l~-l~~~~d~~~~rti~Vlt 211 (625)
..+.++||||..+ +..+...|++.+|++++++...+ .-+-... .. +.+.......|+++|.|
T Consensus 48 ~~l~i~Dt~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~pii~v~n 113 (164)
T smart00173 48 CLLDILDTAGQEE-------------FSAMRDQYMRTGEGFLLVYSITD-RQSFEEIKKFREQILRVKDRDDVPIVLVGN 113 (164)
T ss_pred EEEEEEECCCccc-------------chHHHHHHHhhCCEEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 4678999999433 24556778889998777654332 2111111 11 22223334679999999
Q ss_pred cCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccC
Q 006928 212 KLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (625)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (625)
|+|+.+......+.........+.+|+.+.+.+..++++..
T Consensus 114 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 114 KCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAF 154 (164)
T ss_pred CccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHH
Confidence 99987643211111110011223456666666555554433
No 80
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.25 E-value=7.4e-11 Score=110.50 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=69.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+|+|++++|||||+|+|++.++.+.. ...+.......
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~---------------------------------------- 41 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQ-ESTIGAAFLTQ---------------------------------------- 41 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceeEEEE----------------------------------------
Confidence 6899999999999999999999863311 11111000000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH---H
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA---I 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~---l 193 (625)
.+.+. .....+.++|+||- +....+...|++++|++|+++...+. -+...+ +
T Consensus 42 ----------~v~~~-~~~~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~ 96 (163)
T cd01860 42 ----------TVNLD-DTTVKFEIWDTAGQ-------------ERYRSLAPMYYRGAAAAIVVYDITSE-ESFEKAKSWV 96 (163)
T ss_pred ----------EEEEC-CEEEEEEEEeCCch-------------HHHHHHHHHHhccCCEEEEEEECcCH-HHHHHHHHHH
Confidence 00111 11235789999993 22355567788999998887655432 112222 2
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
..+......+.+.++|+||+|+.+.
T Consensus 97 ~~~~~~~~~~~~iivv~nK~D~~~~ 121 (163)
T cd01860 97 KELQRNASPNIIIALVGNKADLESK 121 (163)
T ss_pred HHHHHhCCCCCeEEEEEECcccccc
Confidence 2233333345789999999998743
No 81
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.25 E-value=9.8e-11 Score=109.86 Aligned_cols=69 Identities=29% Similarity=0.345 Sum_probs=45.1
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.++||||. +....+...+++++|++++++. .+....-. .++....... .+.+.++|+||
T Consensus 52 ~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK 116 (164)
T cd04101 52 VELFIFDSAGQ-------------ELYSDMVSNYWESPSVFILVYD-VSNKASFENCSRWVNKVRTAS-KHMPGVLVGNK 116 (164)
T ss_pred EEEEEEECCCH-------------HHHHHHHHHHhCCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 56899999992 3346678889999998877664 43321111 2222233333 35899999999
Q ss_pred CcccCcc
Q 006928 213 LDLMDKG 219 (625)
Q Consensus 213 ~D~~~~~ 219 (625)
+|+.+..
T Consensus 117 ~Dl~~~~ 123 (164)
T cd04101 117 MDLADKA 123 (164)
T ss_pred ccccccc
Confidence 9986543
No 82
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.25 E-value=5.8e-11 Score=111.12 Aligned_cols=70 Identities=24% Similarity=0.339 Sum_probs=44.7
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhC--CCCCceEEEeccC
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVD--PTGERTFGVLTKL 213 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d--~~~~rti~VltK~ 213 (625)
..+.|+||||- +....+...|++.+|+++++....+. -.......+...+. ..+.|.++|+||+
T Consensus 51 ~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~~v~v~d~~~~-~s~~~l~~~~~~~~~~~~~~p~iiv~nK~ 116 (162)
T cd04106 51 VRLMLWDTAGQ-------------EEFDAITKAYYRGAQACILVFSTTDR-ESFEAIESWKEKVEAECGDIPMVLVQTKI 116 (162)
T ss_pred EEEEEeeCCch-------------HHHHHhHHHHhcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 46899999992 23456778899999987776544332 11122222222221 2368999999999
Q ss_pred cccCcc
Q 006928 214 DLMDKG 219 (625)
Q Consensus 214 D~~~~~ 219 (625)
|+....
T Consensus 117 Dl~~~~ 122 (162)
T cd04106 117 DLLDQA 122 (162)
T ss_pred hccccc
Confidence 997643
No 83
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.24 E-value=5.3e-11 Score=113.47 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=44.7
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
...+.||||||..+ +..++..|++.+|++|+++. ++.....+.. .....+...+.+.++|+||+|
T Consensus 66 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~D-~~~~~~~~~~-~~~~~~~~~~~~iiiv~NK~D 130 (179)
T cd01890 66 EYLLNLIDTPGHVD-------------FSYEVSRSLAACEGALLLVD-ATQGVEAQTL-ANFYLALENNLEIIPVINKID 130 (179)
T ss_pred cEEEEEEECCCChh-------------hHHHHHHHHHhcCeEEEEEE-CCCCccHhhH-HHHHHHHHcCCCEEEEEECCC
Confidence 35688999999643 24566788899998888665 4433322221 122223335789999999999
Q ss_pred ccC
Q 006928 215 LMD 217 (625)
Q Consensus 215 ~~~ 217 (625)
+.+
T Consensus 131 l~~ 133 (179)
T cd01890 131 LPS 133 (179)
T ss_pred CCc
Confidence 864
No 84
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.24 E-value=9.6e-11 Score=112.47 Aligned_cols=115 Identities=18% Similarity=0.299 Sum_probs=70.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+++|.+|||||||++++.+..+.. ..|+.
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~~-------~~~t~------------------------------------------ 35 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFVN-------TVPTK------------------------------------------ 35 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCC-------cCCcc------------------------------------------
Confidence 69999999999999999999876521 12210
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH--
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK-- 194 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~-- 194 (625)
++....+.+.+.......+.++||||.. .+..+...|++++|++|+++...+. -....+..
T Consensus 36 ---~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~D~~~~-~~~~~~~~~~ 98 (183)
T cd04152 36 ---GFNTEKIKVSLGNSKGITFHFWDVGGQE-------------KLRPLWKSYTRCTDGIVFVVDSVDV-ERMEEAKTEL 98 (183)
T ss_pred ---ccceeEEEeeccCCCceEEEEEECCCcH-------------hHHHHHHHHhccCCEEEEEEECCCH-HHHHHHHHHH
Confidence 0111111121212233568999999932 2356778889999988776654332 11112211
Q ss_pred --HHHHhCCCCCceEEEeccCcccC
Q 006928 195 --LAREVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 195 --l~~~~d~~~~rti~VltK~D~~~ 217 (625)
+.+.....+.|+++|+||+|+..
T Consensus 99 ~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 99 HKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHhhhhcCCCcEEEEEECcCccc
Confidence 22222335789999999999864
No 85
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.24 E-value=9.5e-11 Score=110.25 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=47.3
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~---~~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.|+||||- +....+...+++.+|++++++...+ ..+. ..++..+....+.+.|.++|.||
T Consensus 52 ~~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~llv~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 117 (165)
T cd01864 52 VKLQIWDTAGQ-------------ERFRTITQSYYRSANGAIIAYDITR-RSSFESVPHWIEEVEKYGASNVVLLLIGNK 117 (165)
T ss_pred EEEEEEECCCh-------------HHHHHHHHHHhccCCEEEEEEECcC-HHHHHhHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 46899999992 2345677888999998887665443 2221 22343344444557889999999
Q ss_pred CcccCcc
Q 006928 213 LDLMDKG 219 (625)
Q Consensus 213 ~D~~~~~ 219 (625)
+|+....
T Consensus 118 ~Dl~~~~ 124 (165)
T cd01864 118 CDLEEQR 124 (165)
T ss_pred ccccccc
Confidence 9997653
No 86
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.24 E-value=7.8e-11 Score=110.23 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=82.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+++|.+|+|||||++++++..+ +.+....+.... ..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~-~~---------------------------------------- 39 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSY-RK---------------------------------------- 39 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhE-EE----------------------------------------
Confidence 589999999999999999998875 322221111100 00
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cc-cHHHH-
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IA-TSDAI- 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~-~~~~l- 193 (625)
..........+.++||||... ...+...+++.++++++++...+.+ +. ...+.
T Consensus 40 -----------~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 95 (164)
T cd04139 40 -----------KVVLDGEDVQLNILDTAGQED-------------YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFRE 95 (164)
T ss_pred -----------EEEECCEEEEEEEEECCChhh-------------hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHH
Confidence 001111224588999999432 2455667889999888766533211 11 11222
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccC
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (625)
.+.+.....+.|.++|+||+|+.................++.+|+.+......++.+..
T Consensus 96 ~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 96 QILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAF 154 (164)
T ss_pred HHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHH
Confidence 23333234579999999999997632211111111111233456666666555554443
No 87
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=4.9e-12 Score=126.99 Aligned_cols=169 Identities=19% Similarity=0.235 Sum_probs=106.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccc---cccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHH
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPR---GSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISD 109 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~~~lP~---~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 109 (625)
.+-|.|.++|..|.||||+|+.|++.++ |. |..++|.+- ...++.+.+...+-+.+...-..
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~F--------------i~vM~G~~e~~ipGnal~vd~~~ 120 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRF--------------IAVMHGDEEGSIPGNALVVDAKK 120 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCccee--------------EEEEecCcccccCCceeeecCCC
Confidence 4789999999999999999999999985 61 111223222 22233332222111111100000
Q ss_pred HHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc
Q 006928 110 ETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT 189 (625)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~ 189 (625)
....+...+.+|-+...+.++.++-...++||||||+.+.... .-+-.-.+...+.-|+.++|.|||+.+++.-|++.
T Consensus 121 pF~gL~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQ--risR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsd 198 (532)
T KOG1954|consen 121 PFRGLNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQ--RISRGYDFTGVLEWFAERVDRIILLFDAHKLDISD 198 (532)
T ss_pred chhhhhhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchh--cccccCChHHHHHHHHHhccEEEEEechhhccccH
Confidence 0011112223333334444566666789999999999886543 11112234677788999999999998888877766
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.-.. .+..+......+-+|+||.|.++..
T Consensus 199 Ef~~-vi~aLkG~EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 199 EFKR-VIDALKGHEDKIRVVLNKADQVDTQ 227 (532)
T ss_pred HHHH-HHHHhhCCcceeEEEeccccccCHH
Confidence 5443 6677777788999999999999864
No 88
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.23 E-value=7e-11 Score=112.79 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=44.4
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHh----CCCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV----DPTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~----d~~~~rti~Vlt 211 (625)
..+.|+|||| .+....+...|++++|++|++++. +..-+-.....+...+ ...+.++++|.|
T Consensus 63 ~~~~i~Dt~G-------------~~~~~~~~~~~~~~~~~~i~v~d~-~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 128 (180)
T cd04127 63 IHLQLWDTAG-------------QERFRSLTTAFFRDAMGFLLIFDL-TNEQSFLNVRNWMSQLQTHAYCENPDIVLCGN 128 (180)
T ss_pred EEEEEEeCCC-------------hHHHHHHHHHHhCCCCEEEEEEEC-CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEe
Confidence 3578999999 234567788899999988776554 3222222222232222 123568999999
Q ss_pred cCcccCc
Q 006928 212 KLDLMDK 218 (625)
Q Consensus 212 K~D~~~~ 218 (625)
|+|+.+.
T Consensus 129 K~Dl~~~ 135 (180)
T cd04127 129 KADLEDQ 135 (180)
T ss_pred Cccchhc
Confidence 9999754
No 89
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.23 E-value=6.7e-11 Score=110.35 Aligned_cols=102 Identities=12% Similarity=0.176 Sum_probs=56.0
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccH-HHH-HHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATS-DAI-KLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~~-~~l-~l~~~~d~~~~rti~VltK 212 (625)
..+.++||||-. .+..+...|++.++++++++...+. .+... .+. .+.+.....+.|+++|.||
T Consensus 49 ~~~~i~Dt~G~~-------------~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK 115 (162)
T cd04138 49 CLLDILDTAGQE-------------EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNK 115 (162)
T ss_pred EEEEEEECCCCc-------------chHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 347789999942 2356777899999987776543321 11111 111 2233334457899999999
Q ss_pred CcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhcc
Q 006928 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKN 251 (625)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (625)
+|+........+... .....+..|+.+.+.+..++++.
T Consensus 116 ~Dl~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 116 CDLAARTVSSRQGQD-LAKSYGIPYIETSAKTRQGVEEA 153 (162)
T ss_pred cccccceecHHHHHH-HHHHhCCeEEEecCCCCCCHHHH
Confidence 999764321111111 01122344566655555555443
No 90
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=99.23 E-value=2.7e-09 Score=120.11 Aligned_cols=486 Identities=23% Similarity=0.249 Sum_probs=337.0
Q ss_pred cceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHH
Q 006928 85 DYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIEN 164 (625)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~ 164 (625)
+|..+.+.+...+.++..+..+....+....+...++...++.+.+..+....++.+|.||+...+...+++.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (546)
T COG0699 2 EEFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDEL 81 (546)
T ss_pred CcchhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHH
Confidence 34556667777788899999999888888888888999999999999999999999999999999988888887777667
Q ss_pred HHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCC
Q 006928 165 MVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRS 244 (625)
Q Consensus 165 ~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 244 (625)
+-..++...+++|.....++.+..+......++..++ +.++.+.++.+.+.... .+.|+..+.+..
T Consensus 82 ~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 147 (546)
T COG0699 82 LDLGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDAL 147 (546)
T ss_pred HHhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCch
Confidence 7788888888889888888888888877777776655 77888777766532111 567777777777
Q ss_pred hhhhhccCCHHHHHHHHHhhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 006928 245 QADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPI 324 (625)
Q Consensus 245 ~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~eL~~lg~~~ 324 (625)
..++........+...+..+|..++.+.+....++...+...++..+..++....|+........... .++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~- 220 (546)
T COG0699 148 ETDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN- 220 (546)
T ss_pred hHHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch-
Confidence 78888888888888888889999998888777889999999999999999988887665544433321 12111
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCCCCCchhHhHHhhhhHHHhccCCccccCchhhHHHHHHhhccCCCCCCCch
Q 006928 325 GVDSGAQLYTILEMCRAFERVFKEHLDGGRAGGDRIYGVFDHQLPAALKKLPFDRHLSTRNVQKVVSEADGYQPHLIAPE 404 (625)
Q Consensus 325 ~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~g~~i~~~f~~~f~~~~~~~~~~~~~~~~~i~~~i~~~~G~~p~~~~pe 404 (625)
.+......|...+....+| +++... ...+.....+...++.....++.|..|..+...
T Consensus 221 ---------~~~~~~~~~~~~~~~~~~~-----~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (546)
T COG0699 221 ---------EVLAVIQTLLKRLSELVRG-----ARIRLN--------IILFSDLEEVSDSPVLLKELASKGERPSLLSGL 278 (546)
T ss_pred ---------HHHHHHHHHHHHHHHHhcc-----chhhhh--------hcccchHHHhhhhhhHHHHHcccCCCccccccc
Confidence 2444455555555533333 333322 011111112344556666677777777677777
Q ss_pred hHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006928 405 QGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTLQSDIAAAATEALEKFRDESRKTVLRLVDMES 484 (625)
Q Consensus 405 ~af~~li~~~i~~l~~Ps~~~v~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~~~~~l~~~~~~a~~~i~~li~~E~ 484 (625)
.++...+..++..+..+..+|+..+...+.++....+. ......||.+...+...+.....+........+...++.+.
T Consensus 279 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (546)
T COG0699 279 TLLDTLVETPIGQFDTQINQLLRKLISELVRILLKELE-SASSSPFPKLSEALEEVVNQLKNKVDSGLESGLLAIIDIEE 357 (546)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccchhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 78888899888888888888888777777666333222 24578999999999999988878888888888988899888
Q ss_pred ccccH---HHhh--hhhcccccc-----------c-cC-CCCCCCCC-----------------------------CCC-
Q 006928 485 SYLTV---EFFR--KLSEQPERS-----------A-SD-KNASDKNA-----------------------------PDR- 516 (625)
Q Consensus 485 ~yint---~~~~--~~~~~~~~~-----------~-~~-~~~~~~~~-----------------------------~~~- 516 (625)
.|+++ ++.. .+.....+. . .. ........ ...
T Consensus 358 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (546)
T COG0699 358 RYINTKHPLFLSLRQAAAILSKVLDNLEALLRSLDDSRLRELSDMGLNSLLSNNLEEHLLGSDFSLYKFLNEFLELKKLD 437 (546)
T ss_pred HHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhcccchhHHHHHHHHhhcchhhHHHHHHHHhhhccch
Confidence 88873 1111 000000000 0 00 00000000 000
Q ss_pred --CCCCC-----CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHh
Q 006928 517 --NAPPP-----GPQNPERFSDYHFRRIGSNVSGYIGMVCDTLKNSIPKAVVYCQVLAAKRSLLNQFYAHVGRQEKERLG 589 (625)
Q Consensus 517 --~~~~~-----~~~~~~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lV~~~~~~l~~~L~~~L~~~~~~~~~ 589 (625)
..... ......+......+.+..++++| .++...+.|.|+++++..+.+..+..........++... ..+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 514 (546)
T COG0699 438 ALLATLGEALRRLTGLLPERKTLEKQLIKSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLEQ--LED 514 (546)
T ss_pred hhhccchHHHHHhhcccchhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 00000 00000011112234568889999 999999999999999999977777666666666666554 367
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 006928 590 KMLDEDPQLMDRRATLAKRLELYKSARD 617 (625)
Q Consensus 590 ~ll~E~~~i~~~R~~l~~~l~~L~~A~~ 617 (625)
.+..+.+.+.+.|..+.+.+..+.++..
T Consensus 515 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (546)
T COG0699 515 ELLRTAEEILELRLLLEQFLEALKLAAR 542 (546)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999888765
No 91
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.23 E-value=6e-11 Score=111.12 Aligned_cols=121 Identities=23% Similarity=0.352 Sum_probs=76.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccccc--ccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV--TRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~--Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
.|+++|..|||||||+|+|++..+.|..++.. |+.+
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~------------------------------------------ 38 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLI------------------------------------------ 38 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeE------------------------------------------
Confidence 48999999999999999999655544443321 1111
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCC---CEEEEEEecCCCccccHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKP---SCIILAISPANQDIATSD 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~---~~iIl~v~~a~~d~~~~~ 191 (625)
....+ ...++++||||+..... +.+..+.+..++..|+... +.+++ +.+........
T Consensus 39 -----------~~~~~----~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~d~~~~~~~~- 98 (170)
T cd01876 39 -----------NFFNV----NDKFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVL-LIDSRHGPTEI- 98 (170)
T ss_pred -----------EEEEc----cCeEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEE-EEEcCcCCCHh-
Confidence 00011 12799999999876433 3334566677778888654 44444 54554333222
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
...+.+.+...+.++++|+||+|++..+
T Consensus 99 ~~~~~~~l~~~~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 99 DLEMLDWLEELGIPFLVVLTKADKLKKS 126 (170)
T ss_pred HHHHHHHHHHcCCCEEEEEEchhcCChH
Confidence 2235555555678999999999997654
No 92
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.23 E-value=6.2e-11 Score=111.33 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=44.3
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HHH-HHHHhCCCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIK-LAREVDPTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~l~-l~~~~d~~~~rti~Vlt 211 (625)
..+.|+||||... ...+...|++.+|++|++++..+ ..+... +.. +.+.....+.|.++|.|
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piilv~n 114 (164)
T cd04175 49 CMLEILDTAGTEQ-------------FTAMRDLYMKNGQGFVLVYSITA-QSTFNDLQDLREQILRVKDTEDVPMILVGN 114 (164)
T ss_pred EEEEEEECCCccc-------------chhHHHHHHhhCCEEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 5678999999432 25566778999999888665432 121122 222 22222345689999999
Q ss_pred cCcccCc
Q 006928 212 KLDLMDK 218 (625)
Q Consensus 212 K~D~~~~ 218 (625)
|+|+...
T Consensus 115 K~Dl~~~ 121 (164)
T cd04175 115 KCDLEDE 121 (164)
T ss_pred CCcchhc
Confidence 9999754
No 93
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.23 E-value=9.3e-11 Score=112.45 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=46.2
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
...++||||||..+ .......+++.+|++++++. +....... ...+...+...+.+.++|+||+|
T Consensus 61 ~~~~~liDtpG~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~~~~-~~~~~~~~~~~~~~i~iv~nK~D 125 (189)
T cd00881 61 DRRVNFIDTPGHED-------------FSSEVIRGLSVSDGAILVVD-ANEGVQPQ-TREHLRIAREGGLPIIVAINKID 125 (189)
T ss_pred CEEEEEEeCCCcHH-------------HHHHHHHHHHhcCEEEEEEE-CCCCCcHH-HHHHHHHHHHCCCCeEEEEECCC
Confidence 46799999999542 24456778889998877554 44333222 22233334346799999999999
Q ss_pred ccCc
Q 006928 215 LMDK 218 (625)
Q Consensus 215 ~~~~ 218 (625)
+...
T Consensus 126 ~~~~ 129 (189)
T cd00881 126 RVGE 129 (189)
T ss_pred Ccch
Confidence 9863
No 94
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.22 E-value=1.5e-10 Score=117.52 Aligned_cols=139 Identities=18% Similarity=0.291 Sum_probs=82.9
Q ss_pred HHHHHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccc-cccccccEEEEEeecCCCCcceeec
Q 006928 12 NKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEFL 90 (625)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~ 90 (625)
.+|.+.+..+...+ .+..+|+|+|.+|+||||++|+|+|.+....+. ..+|..|+...
T Consensus 22 ~~l~~~l~~l~~~~-------~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~-------------- 80 (313)
T TIGR00991 22 TKLLELLGKLKEED-------VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS-------------- 80 (313)
T ss_pred HHHHHHHHhccccc-------ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE--------------
Confidence 34445554444433 467899999999999999999999987532221 11222221111
Q ss_pred cCCCCccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhh
Q 006928 91 HAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV 170 (625)
Q Consensus 91 ~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi 170 (625)
. ..+...+++|||||+.+.. ...+.+.+.+..|+
T Consensus 81 ---------------------------------------~-~~~G~~l~VIDTPGL~d~~------~~~e~~~~~ik~~l 114 (313)
T TIGR00991 81 ---------------------------------------R-TRAGFTLNIIDTPGLIEGG------YINDQAVNIIKRFL 114 (313)
T ss_pred ---------------------------------------E-EECCeEEEEEECCCCCchH------HHHHHHHHHHHHHh
Confidence 0 0123579999999998642 23444556666666
Q ss_pred c--CCCEEEEEEecCCC-cccc--HHHHHHHHHhC--CCCCceEEEeccCcccCc
Q 006928 171 E--KPSCIILAISPANQ-DIAT--SDAIKLAREVD--PTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 171 ~--~~~~iIl~v~~a~~-d~~~--~~~l~l~~~~d--~~~~rti~VltK~D~~~~ 218 (625)
. .+|++++ |...+. .+.. ...++....+- ..-.++|+|+|+.|..++
T Consensus 115 ~~~g~DvVLy-V~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 115 LGKTIDVLLY-VDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred hcCCCCEEEE-EeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 4 5786555 543321 2222 23344444432 223689999999998854
No 95
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.21 E-value=8.3e-11 Score=115.97 Aligned_cols=155 Identities=16% Similarity=0.138 Sum_probs=84.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|++||++|+|||||++++++..| +... .|+.-
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~-----~~T~~----------------------------------------- 34 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSY-----KQTIG----------------------------------------- 34 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCC-----CCcee-----------------------------------------
Confidence 589999999999999999998875 2211 12110
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAI 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~~l 193 (625)
+......+.+.+.....+.|+||||- +....+...|++++|++|++++..+. -+.. .+.
T Consensus 35 ----~d~~~~~i~~~~~~~~~~~i~Dt~G~-------------~~~~~l~~~~~~~ad~iilV~D~t~~-~s~~~~~~w~ 96 (215)
T cd04109 35 ----LDFFSKRVTLPGNLNVTLQVWDIGGQ-------------SIGGKMLDKYIYGAHAVFLVYDVTNS-QSFENLEDWY 96 (215)
T ss_pred ----EEEEEEEEEeCCCCEEEEEEEECCCc-------------HHHHHHHHHHhhcCCEEEEEEECCCH-HHHHHHHHHH
Confidence 00000111121212346889999993 22356778899999998886654432 1111 223
Q ss_pred HHHHHhCC---CCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHH
Q 006928 194 KLAREVDP---TGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (625)
Q Consensus 194 ~l~~~~d~---~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (625)
..+....+ .+.+.++|.||+|+........+....-....+.+++.+.+.+..++.+....+.
T Consensus 97 ~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~ 162 (215)
T cd04109 97 SMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLA 162 (215)
T ss_pred HHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 33333322 2346889999999974332111111100112234566666665555555444433
No 96
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.20 E-value=8.5e-11 Score=114.60 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=43.5
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHh-------CCCCCceEE
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV-------DPTGERTFG 208 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~-------d~~~~rti~ 208 (625)
..+.|+||||- +....+...|+++++++|+++...+ ..+-..+..+...+ .....|+++
T Consensus 50 ~~l~l~Dt~G~-------------~~~~~~~~~~~~~a~~~ilv~D~t~-~~s~~~~~~~~~~i~~~~~~~~~~~~piil 115 (201)
T cd04107 50 VRLQLWDIAGQ-------------ERFGGMTRVYYRGAVGAIIVFDVTR-PSTFEAVLKWKADLDSKVTLPNGEPIPCLL 115 (201)
T ss_pred EEEEEEECCCc-------------hhhhhhHHHHhCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhhcccCCCCCcEEE
Confidence 46889999994 2235677889999999888665433 22212221122211 124678999
Q ss_pred EeccCcccC
Q 006928 209 VLTKLDLMD 217 (625)
Q Consensus 209 VltK~D~~~ 217 (625)
|.||.|+.+
T Consensus 116 v~NK~Dl~~ 124 (201)
T cd04107 116 LANKCDLKK 124 (201)
T ss_pred EEECCCccc
Confidence 999999974
No 97
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.20 E-value=1.7e-10 Score=107.65 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=44.0
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK 212 (625)
..+.++|+||-. ....+...|++++|+++++++..+. -.... +++.++...+.+.++++|+||
T Consensus 49 ~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piiiv~nK 114 (162)
T cd04123 49 IDLAIWDTAGQE-------------RYHALGPIYYRDADGAILVYDITDA-DSFQKVKKWIKELKQMRGNNISLVIVGNK 114 (162)
T ss_pred EEEEEEECCchH-------------HHHHhhHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 358899999932 2345666788899987776654332 22122 222233344446899999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+...
T Consensus 115 ~D~~~~ 120 (162)
T cd04123 115 IDLERQ 120 (162)
T ss_pred cccccc
Confidence 998754
No 98
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.20 E-value=1.2e-10 Score=108.89 Aligned_cols=104 Identities=15% Similarity=0.228 Sum_probs=57.7
Q ss_pred EEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 140 LIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 140 lvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+|||||...... +....+ ..+++.+|++++++...+.+...... +. .+. .+.+.++|+||+|+.+..
T Consensus 41 ~iDtpG~~~~~~--------~~~~~~-~~~~~~ad~il~v~d~~~~~s~~~~~--~~-~~~-~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 41 DIDTPGEYFSHP--------RWYHAL-ITTLQDVDMLIYVHGANDPESRLPAG--LL-DIG-VSKRQIAVISKTDMPDAD 107 (158)
T ss_pred cccCCccccCCH--------HHHHHH-HHHHhcCCEEEEEEeCCCcccccCHH--HH-hcc-CCCCeEEEEEccccCccc
Confidence 699999764321 122333 34578999887765543322111111 22 222 357899999999986432
Q ss_pred cc-HHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 006928 220 TN-ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (625)
Q Consensus 220 ~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (625)
.+ ..+.+. ......+++.+..++++++.+....+...
T Consensus 108 ~~~~~~~~~--~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~ 145 (158)
T PRK15467 108 VAATRKLLL--ETGFEEPIFELNSHDPQSVQQLVDYLASL 145 (158)
T ss_pred HHHHHHHHH--HcCCCCCEEEEECCCccCHHHHHHHHHHh
Confidence 11 122222 11222467778888877776666555443
No 99
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.20 E-value=1.6e-10 Score=109.00 Aligned_cols=119 Identities=16% Similarity=0.247 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.++.|+++|.+|+|||||++++++..+.|......+......
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------- 47 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIK-------------------------------------- 47 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEE--------------------------------------
Confidence 468999999999999999999997665322111010000000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~---~ 190 (625)
.+.+. .....+.++|+||.. ....+...|+..+|++++++...+. .+. .
T Consensus 48 -------------~~~~~-~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~ 99 (169)
T cd04114 48 -------------TVEIK-GEKIKLQIWDTAGQE-------------RFRSITQSYYRSANALILTYDITCE-ESFRCLP 99 (169)
T ss_pred -------------EEEEC-CEEEEEEEEECCCcH-------------HHHHHHHHHhcCCCEEEEEEECcCH-HHHHHHH
Confidence 00111 111357899999942 2245557789999988776654321 111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++..++.+...+.+.++|.||+|+.+.
T Consensus 100 ~~~~~l~~~~~~~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 100 EWLREIEQYANNKVITILVGNKIDLAER 127 (169)
T ss_pred HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 3333345555557889999999998654
No 100
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.19 E-value=5.6e-11 Score=116.83 Aligned_cols=126 Identities=25% Similarity=0.405 Sum_probs=73.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccc--cccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGS--GIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~--~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
+|+++|..||||||+.|+|+|.+.++.+. ..||..+.... . ..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~---~--------------------------------~~ 46 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYS---G--------------------------------EV 46 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEE---E--------------------------------EE
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceee---e--------------------------------ee
Confidence 69999999999999999999999888763 24565552221 0 01
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--H
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--A 192 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~--~ 192 (625)
+...+++|||||+...... ++.+.+.+.+.+......+|+++| |++.. .++..+ .
T Consensus 47 -------------------~g~~v~VIDTPGl~d~~~~--~~~~~~~i~~~l~~~~~g~ha~ll-Vi~~~-r~t~~~~~~ 103 (212)
T PF04548_consen 47 -------------------DGRQVTVIDTPGLFDSDGS--DEEIIREIKRCLSLCSPGPHAFLL-VIPLG-RFTEEDREV 103 (212)
T ss_dssp -------------------TTEEEEEEE--SSEETTEE--HHHHHHHHHHHHHHTTT-ESEEEE-EEETT-B-SHHHHHH
T ss_pred -------------------cceEEEEEeCCCCCCCccc--HHHHHHHHHHHHHhccCCCeEEEE-EEecC-cchHHHHHH
Confidence 1257899999999765432 222223333332233356887665 56666 565443 3
Q ss_pred HHHHHHh-CC-CCCceEEEeccCcccCccc
Q 006928 193 IKLAREV-DP-TGERTFGVLTKLDLMDKGT 220 (625)
Q Consensus 193 l~l~~~~-d~-~~~rti~VltK~D~~~~~~ 220 (625)
++....+ .+ .-+.+|+|+|..|......
T Consensus 104 l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 104 LELLQEIFGEEIWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp HHHHHHHHCGGGGGGEEEEEEEGGGGTTTT
T ss_pred HHHHHHHccHHHHhHhhHHhhhcccccccc
Confidence 4444433 22 2468999999999887654
No 101
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.19 E-value=1.4e-10 Score=111.97 Aligned_cols=109 Identities=12% Similarity=0.124 Sum_probs=59.2
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHHHHHHHhC---CCCCceEEE
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVD---PTGERTFGV 209 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~~l~l~~~~d---~~~~rti~V 209 (625)
..+.|+||||.. ....+...|++.+|++|++++..+ ..+.. .++..+.... +.+.|+|+|
T Consensus 47 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~piilv 112 (190)
T cd04144 47 CMLEVLDTAGQE-------------EYTALRDQWIREGEGFILVYSITS-RSTFERVERFREQIQRVKDESAADVPIMIV 112 (190)
T ss_pred EEEEEEECCCch-------------hhHHHHHHHHHhCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 358899999932 224566789999998887664433 21111 2222233332 246799999
Q ss_pred eccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 006928 210 LTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (625)
Q Consensus 210 ltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (625)
.||+|+..................+..|+.+.+.+..++++....+...
T Consensus 113 gNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~ 161 (190)
T cd04144 113 GNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRA 161 (190)
T ss_pred EEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 9999996532211111110011223346666655555555555544443
No 102
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.19 E-value=1.4e-10 Score=108.38 Aligned_cols=112 Identities=19% Similarity=0.297 Sum_probs=68.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
+|+++|.+++|||||++++++..+ +. ..|+. |
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~-~~------~~~t~-----------------------------------------~ 32 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL-VT------TIPTV-----------------------------------------G 32 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc-cc------ccCcc-----------------------------------------C
Confidence 489999999999999999999875 11 12210 0
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~ 196 (625)
+.... +..+....+.++||||.. .+..+...|+..+|++|++++ +........+....
T Consensus 33 ----~~~~~----~~~~~~~~l~i~D~~G~~-------------~~~~~~~~~~~~~~~iv~v~D-~~~~~~~~~~~~~~ 90 (160)
T cd04156 33 ----FNVEM----LQLEKHLSLTVWDVGGQE-------------KMRTVWKCYLENTDGLVYVVD-SSDEARLDESQKEL 90 (160)
T ss_pred ----cceEE----EEeCCceEEEEEECCCCH-------------hHHHHHHHHhccCCEEEEEEE-CCcHHHHHHHHHHH
Confidence 00000 111233578999999943 234566778899998877654 43322222222222
Q ss_pred HHh----CCCCCceEEEeccCcccCc
Q 006928 197 REV----DPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 197 ~~~----d~~~~rti~VltK~D~~~~ 218 (625)
.++ ...+.|+++|+||+|+.+.
T Consensus 91 ~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (160)
T cd04156 91 KHILKNEHIKGVPVVLLANKQDLPGA 116 (160)
T ss_pred HHHHhchhhcCCCEEEEEECcccccC
Confidence 221 1247899999999998643
No 103
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.18 E-value=1.4e-10 Score=108.77 Aligned_cols=114 Identities=20% Similarity=0.270 Sum_probs=69.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|++||++++|||||++++++..|-|... .|..+....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~---------------------------------------- 39 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQL--STYALTLYK---------------------------------------- 39 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcC--CceeeEEEE----------------------------------------
Confidence 68999999999999999999887633211 111110000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AI 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~l 193 (625)
..+.+ ......+.++||||-. ....+...|++++|++|+++.. +....... ++
T Consensus 40 ---------~~~~~-~~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~~~~ 95 (161)
T cd04124 40 ---------HNAKF-EGKTILVDFWDTAGQE-------------RFQTMHASYYHKAHACILVFDV-TRKITYKNLSKWY 95 (161)
T ss_pred ---------EEEEE-CCEEEEEEEEeCCCch-------------hhhhhhHHHhCCCCEEEEEEEC-CCHHHHHHHHHHH
Confidence 00001 1112467899999932 3356778899999988876654 33222222 23
Q ss_pred HHHHHhCCCCCceEEEeccCcccC
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~ 217 (625)
..++...+ +.|.++|+||+|+..
T Consensus 96 ~~i~~~~~-~~p~ivv~nK~Dl~~ 118 (161)
T cd04124 96 EELREYRP-EIPCIVVANKIDLDP 118 (161)
T ss_pred HHHHHhCC-CCcEEEEEECccCch
Confidence 33333322 589999999999853
No 104
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.18 E-value=1.7e-10 Score=113.34 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=86.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
..|+|+|++|+|||||++++++..+-+.. . |+.-.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~-----~ti~~--------------------------------------- 37 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS-D-----PTVGV--------------------------------------- 37 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-C-----ceece---------------------------------------
Confidence 47999999999999999999998752221 1 11000
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
.+.. -.+.+.......+.++||||-. ....+...|++++|++|++++..+ .-+......+
T Consensus 38 ----d~~~--~~i~~~~~~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~iilv~D~~~-~~Sf~~l~~~ 97 (211)
T cd04111 38 ----DFFS--RLIEIEPGVRIKLQLWDTAGQE-------------RFRSITRSYYRNSVGVLLVFDITN-RESFEHVHDW 97 (211)
T ss_pred ----EEEE--EEEEECCCCEEEEEEEeCCcch-------------hHHHHHHHHhcCCcEEEEEEECCC-HHHHHHHHHH
Confidence 0000 0011111112468899999932 235667789999998877665433 2111222222
Q ss_pred HH----HhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHH
Q 006928 196 AR----EVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (625)
Q Consensus 196 ~~----~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (625)
.. ...+...+.++|.||.|+.+......+....-....+.+|+.+...+..++.+....+..
T Consensus 98 ~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~ 163 (211)
T cd04111 98 LEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQ 163 (211)
T ss_pred HHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 22 233445667889999999764321111111001223356777666666666555554443
No 105
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.18 E-value=2.4e-10 Score=111.31 Aligned_cols=117 Identities=17% Similarity=0.251 Sum_probs=73.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
||+|+|+.++|||||+.++.+..| +.... |+.-
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~~-----~Ti~----------------------------------------- 34 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-CEACK-----SGVG----------------------------------------- 34 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-CCcCC-----Ccce-----------------------------------------
Confidence 799999999999999999998776 21111 1000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SDAIK 194 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~-~~~l~ 194 (625)
.+|... .+.+. .....+.|+||||- +....+...|++++|++|++++..+.+ +.. ..++.
T Consensus 35 --~~~~~~--~i~~~-~~~v~l~iwDtaGq-------------e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~ 96 (202)
T cd04120 35 --VDFKIK--TVELR-GKKIRLQIWDTAGQ-------------ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMK 96 (202)
T ss_pred --eEEEEE--EEEEC-CEEEEEEEEeCCCc-------------hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHH
Confidence 001000 11111 12356899999993 334677889999999988866544321 111 12334
Q ss_pred HHHHhCCCCCceEEEeccCcccCc
Q 006928 195 LAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++.....+.++++|.||+|+.+.
T Consensus 97 ~i~~~~~~~~piilVgNK~DL~~~ 120 (202)
T cd04120 97 MIDKYASEDAELLLVGNKLDCETD 120 (202)
T ss_pred HHHHhCCCCCcEEEEEECcccccc
Confidence 445555567899999999998653
No 106
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.18 E-value=9.2e-11 Score=109.98 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=42.8
Q ss_pred CcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HHHHHHHHHh-CCCCCceEEEeccC
Q 006928 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SDAIKLAREV-DPTGERTFGVLTKL 213 (625)
Q Consensus 137 ~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~-~~~l~l~~~~-d~~~~rti~VltK~ 213 (625)
.+.|+||||..+ +..+...|++++|++|+++...+.. +.. ..+....... ...+.|+++|.||+
T Consensus 50 ~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~ 116 (163)
T cd04176 50 VLEILDTAGTEQ-------------FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKV 116 (163)
T ss_pred EEEEEECCCccc-------------ccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 578999999432 2445667889999988766543321 111 1222222222 33578999999999
Q ss_pred cccCc
Q 006928 214 DLMDK 218 (625)
Q Consensus 214 D~~~~ 218 (625)
|+...
T Consensus 117 Dl~~~ 121 (163)
T cd04176 117 DLESE 121 (163)
T ss_pred cchhc
Confidence 98653
No 107
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.17 E-value=2.1e-10 Score=108.95 Aligned_cols=114 Identities=18% Similarity=0.314 Sum_probs=70.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.-+.|+++|.++||||||+++|+|..+ + +..|+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~------~~~~t---------------------------------------- 45 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-D------TISPT---------------------------------------- 45 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-C------CcCCc----------------------------------------
Confidence 457899999999999999999998743 1 11120
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
.++....+ .+ +...+.++||||.. .+..+...|++.+|+++++++..+. -......
T Consensus 46 -----~g~~~~~~--~~---~~~~l~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~ 101 (173)
T cd04154 46 -----LGFQIKTL--EY---EGYKLNIWDVGGQK-------------TLRPYWRNYFESTDALIWVVDSSDR-LRLDDCK 101 (173)
T ss_pred -----cccceEEE--EE---CCEEEEEEECCCCH-------------HHHHHHHHHhCCCCEEEEEEECCCH-HHHHHHH
Confidence 00111111 11 13568999999942 2355678899999998886654432 1111111
Q ss_pred HHHHH----hCCCCCceEEEeccCcccCc
Q 006928 194 KLARE----VDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~----~d~~~~rti~VltK~D~~~~ 218 (625)
..... ....+.|.++|+||+|+...
T Consensus 102 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 102 RELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 11221 12246899999999999754
No 108
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.17 E-value=1.4e-10 Score=112.91 Aligned_cols=158 Identities=14% Similarity=0.132 Sum_probs=87.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
...|+|||++|+|||||++++.+..| +.. ..|+.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~-~~~-----~~~t~---------------------------------------- 39 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF-SGS-----YITTI---------------------------------------- 39 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCC-----cCccc----------------------------------------
Confidence 56899999999999999999998875 211 01100
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
+++-....+.+. .....+.|+||||-. ....+...|+.+++++|++++..+. .+......
T Consensus 40 -----~~~~~~~~~~~~-~~~~~l~l~D~~G~~-------------~~~~~~~~~~~~a~~iilv~D~~~~-~s~~~~~~ 99 (199)
T cd04110 40 -----GVDFKIRTVEIN-GERVKLQIWDTAGQE-------------RFRTITSTYYRGTHGVIVVYDVTNG-ESFVNVKR 99 (199)
T ss_pred -----cceeEEEEEEEC-CEEEEEEEEeCCCch-------------hHHHHHHHHhCCCcEEEEEEECCCH-HHHHHHHH
Confidence 000000111111 122468899999932 2356678899999988876654432 22222222
Q ss_pred HHHHhC--CCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 006928 195 LAREVD--PTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (625)
Q Consensus 195 l~~~~d--~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (625)
+...+. ....+.++|.||+|+.+................+..|+.+......++.+....+...
T Consensus 100 ~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~ 165 (199)
T cd04110 100 WLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITEL 165 (199)
T ss_pred HHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHH
Confidence 322221 2357889999999987543211111110011223456666666666655555544433
No 109
>PLN03118 Rab family protein; Provisional
Probab=99.17 E-value=2.2e-10 Score=112.60 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=86.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
-.+|+|||++|+|||||+++|++..+ +. ..+.+...
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~-~~-~~~t~~~~------------------------------------------ 49 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV-ED-LAPTIGVD------------------------------------------ 49 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CC-cCCCceeE------------------------------------------
Confidence 34899999999999999999998764 21 11110000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccH-H-
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATS-D- 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~~-~- 191 (625)
.....+.+ ......+.|+||||... +..+...|++++|++|+++...+.+ +..- +
T Consensus 50 --------~~~~~~~~-~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~ 107 (211)
T PLN03118 50 --------FKIKQLTV-GGKRLKLTIWDTAGQER-------------FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDV 107 (211)
T ss_pred --------EEEEEEEE-CCEEEEEEEEECCCchh-------------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHH
Confidence 00011111 11124688999999432 2556778999999988876544321 1111 1
Q ss_pred HHHHHHHhC-CCCCceEEEeccCcccCcccc-HHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHHH
Q 006928 192 AIKLAREVD-PTGERTFGVLTKLDLMDKGTN-ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (625)
Q Consensus 192 ~l~l~~~~d-~~~~rti~VltK~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (625)
+........ ..+.+.++|.||+|+...... ..+... .....+..|+.+...+..++++....+....
T Consensus 108 ~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~-~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 108 WGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA-LAKEHGCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112222222 245688999999998754321 111110 0112234466666666666665555554443
No 110
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.17 E-value=1.5e-10 Score=104.44 Aligned_cols=24 Identities=21% Similarity=0.576 Sum_probs=22.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
+|++||+.+||||||+++|.|.+.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~ 26 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI 26 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC
Confidence 699999999999999999999874
No 111
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.16 E-value=2.3e-10 Score=107.70 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=45.2
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHH----hCCCCCceEEEe
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLARE----VDPTGERTFGVL 210 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~----~d~~~~rti~Vl 210 (625)
...+.++||||... +..+...+++.+|++++++...+.+ .......+... ....+.|+++|+
T Consensus 49 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~v~vvd~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~ 114 (167)
T cd04160 49 NARLKFWDLGGQES-------------LRSLWDKYYAECHAIIYVIDSTDRE-RFEESKSALEKVLRNEALEGVPLLILA 114 (167)
T ss_pred CEEEEEEECCCChh-------------hHHHHHHHhCCCCEEEEEEECchHH-HHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 46789999999532 2456778899999888766543321 11222222222 223478999999
Q ss_pred ccCcccCc
Q 006928 211 TKLDLMDK 218 (625)
Q Consensus 211 tK~D~~~~ 218 (625)
||+|+...
T Consensus 115 NK~D~~~~ 122 (167)
T cd04160 115 NKQDLPDA 122 (167)
T ss_pred EccccccC
Confidence 99998654
No 112
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.16 E-value=4.1e-10 Score=108.51 Aligned_cols=109 Identities=13% Similarity=0.158 Sum_probs=61.2
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK 212 (625)
..+.++||||.. ....+...+++++|++|+++...+. -+-.. ++...+...+...+.++|.||
T Consensus 49 ~~~~i~Dt~g~~-------------~~~~~~~~~~~~~d~iilv~d~~~~-~s~~~i~~~~~~i~~~~~~~~~~ivv~nK 114 (188)
T cd04125 49 IKLQIWDTNGQE-------------RFRSLNNSYYRGAHGYLLVYDVTDQ-ESFENLKFWINEINRYARENVIKVIVANK 114 (188)
T ss_pred EEEEEEECCCcH-------------HHHhhHHHHccCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 457899999932 2245678889999998886654332 22122 223333344455789999999
Q ss_pred CcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 006928 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (625)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (625)
.|+.+................+..|+.+......++++....+...
T Consensus 115 ~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 115 SDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred CCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9987543210111000011223456777666666665554444433
No 113
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.16 E-value=2.8e-10 Score=105.85 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=70.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+|+|+++||||||+++|++..+ +......+..+...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~~~----------------------------------------- 38 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSYRK----------------------------------------- 38 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeEEE-----------------------------------------
Confidence 489999999999999999998863 33322222211000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH---H
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA---I 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~---l 193 (625)
...+ ......+.++|+||... ...+...+++.+|++|+++...+.+ ..... .
T Consensus 39 ----------~~~~-~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~ 93 (160)
T cd00876 39 ----------TIVV-DGETYTLDILDTAGQEE-------------FSAMRDLYIRQGDGFILVYSITDRE-SFEEIKGYR 93 (160)
T ss_pred ----------EEEE-CCEEEEEEEEECCChHH-------------HHHHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHH
Confidence 0001 11124678999999432 3556667888999888766544322 11122 1
Q ss_pred HHHHHhCC-CCCceEEEeccCcccCc
Q 006928 194 KLAREVDP-TGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d~-~~~rti~VltK~D~~~~ 218 (625)
.......+ .+.|+++|+||+|+...
T Consensus 94 ~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 94 EQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred HHHHHhcCCCCCcEEEEEECCccccc
Confidence 22222222 57899999999999863
No 114
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.15 E-value=1.6e-10 Score=108.70 Aligned_cols=102 Identities=16% Similarity=0.129 Sum_probs=55.7
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHHHHHHHhC---CCCCceEEE
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVD---PTGERTFGV 209 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~~l~l~~~~d---~~~~rti~V 209 (625)
..+.++||||..+. ..+...+++.++++|++.+..+ ..+.. .+....++.. ..+.|.++|
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~piilv 114 (165)
T cd04140 49 CTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSVTS-KQSLEELKPIYELICEIKGNNIEKIPIMLV 114 (165)
T ss_pred EEEEEEECCCCCcc-------------hHHHHHHhhcCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 46889999995431 3455677889998777654333 22211 2223333332 246899999
Q ss_pred eccCcccCccc-cHHHHHhCcccccCCCeEEEEeCChhhhhccC
Q 006928 210 LTKLDLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (625)
Q Consensus 210 ltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (625)
.||+|+..... ...+... .....+.+|+.+......++++..
T Consensus 115 ~nK~Dl~~~~~v~~~~~~~-~~~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 115 GNKCDESHKREVSSNEGAA-CATEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred EECccccccCeecHHHHHH-HHHHhCCcEEEeecCCCCCHHHHH
Confidence 99999965322 1111110 011223456666666555544433
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.15 E-value=3.9e-10 Score=106.51 Aligned_cols=70 Identities=14% Similarity=0.303 Sum_probs=46.7
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHh----CCCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV----DPTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~----d~~~~rti~Vlt 211 (625)
..+.++|+||-. ..+.+...|++++|++|++++..+.+ ....+..+...+ ...+.|.++|+|
T Consensus 43 ~~~~i~D~~G~~-------------~~~~~~~~~~~~a~~ii~V~D~s~~~-s~~~~~~~l~~l~~~~~~~~~piliv~N 108 (167)
T cd04161 43 YEVCIFDLGGGA-------------NFRGIWVNYYAEAHGLVFVVDSSDDD-RVQEVKEILRELLQHPRVSGKPILVLAN 108 (167)
T ss_pred EEEEEEECCCcH-------------HHHHHHHHHHcCCCEEEEEEECCchh-HHHHHHHHHHHHHcCccccCCcEEEEEe
Confidence 568999999932 23667789999999988876554432 222222233322 224789999999
Q ss_pred cCcccCcc
Q 006928 212 KLDLMDKG 219 (625)
Q Consensus 212 K~D~~~~~ 219 (625)
|.|+.+..
T Consensus 109 K~Dl~~~~ 116 (167)
T cd04161 109 KQDKKNAL 116 (167)
T ss_pred CCCCcCCC
Confidence 99987654
No 116
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.15 E-value=4.2e-10 Score=106.86 Aligned_cols=147 Identities=17% Similarity=0.197 Sum_probs=84.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+|+|++|+|||||++++.+..| |....+++. . .
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f-~~~~~~t~~-~---~---------------------------------------- 38 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSF-PDYHDPTIE-D---A---------------------------------------- 38 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCcCCccc-c---e----------------------------------------
Confidence 699999999999999999998875 321111110 0 0
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AI 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~l 193 (625)
+ ...+.+. .....+.|+||||-. ....+...|+..+|++|+++...+. .+-.. +.
T Consensus 39 ----~---~~~~~~~-~~~~~l~i~Dt~G~~-------------~~~~l~~~~~~~~d~~ilv~d~~~~-~Sf~~~~~~~ 96 (172)
T cd04141 39 ----Y---KQQARID-NEPALLDILDTAGQA-------------EFTAMRDQYMRCGEGFIICYSVTDR-HSFQEASEFK 96 (172)
T ss_pred ----E---EEEEEEC-CEEEEEEEEeCCCch-------------hhHHHhHHHhhcCCEEEEEEECCch-hHHHHHHHHH
Confidence 0 0011111 122468899999943 2366778899999998887654332 22122 22
Q ss_pred HHHHHh-CCCCCceEEEeccCcccCccc----cHHHHHhCcccccCCCeEEEEeCChhhhhccCCH
Q 006928 194 KLAREV-DPTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDM 254 (625)
Q Consensus 194 ~l~~~~-d~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (625)
....+. ...+.|+++|.||+|+.+... +...+.+ ..+.+|+.+......++++....
T Consensus 97 ~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~----~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 97 KLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAR----EFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred HHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHH----HhCCEEEEEecCCCCCHHHHHHH
Confidence 334443 234689999999999865321 1111111 22345666665555555444433
No 117
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.15 E-value=4.3e-10 Score=105.13 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=44.0
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH---HHHH-HHhCCCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA---IKLA-REVDPTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~---l~l~-~~~d~~~~rti~Vlt 211 (625)
..+.++|+||... ...+...+++.+|++++++...+ .-+.... +..+ +.....+.+.++|+|
T Consensus 49 ~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~iv~n 114 (161)
T cd01863 49 VKLAIWDTAGQER-------------FRTLTSSYYRGAQGVILVYDVTR-RDTFTNLETWLNELETYSTNNDIVKMLVGN 114 (161)
T ss_pred EEEEEEECCCchh-------------hhhhhHHHhCCCCEEEEEEECCC-HHHHHhHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 4689999999422 24556778899998777665432 2222222 2222 223455788999999
Q ss_pred cCcccCcc
Q 006928 212 KLDLMDKG 219 (625)
Q Consensus 212 K~D~~~~~ 219 (625)
|+|+....
T Consensus 115 K~D~~~~~ 122 (161)
T cd01863 115 KIDKENRE 122 (161)
T ss_pred CCcccccc
Confidence 99997443
No 118
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.15 E-value=5.6e-10 Score=107.23 Aligned_cols=114 Identities=17% Similarity=0.237 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.-+.|+++|.+||||||++++++|..+-. ..+|..|+...
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~~~------------------------------------- 55 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTSEE------------------------------------- 55 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccceEE-------------------------------------
Confidence 45789999999999999999999976411 11232221110
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccHH-
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATSD- 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~~~- 191 (625)
+.+ +...+.++||||... .+.+...|+.++|++|++++.++.+ +....
T Consensus 56 --------------~~~---~~~~~~~~D~~G~~~-------------~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~ 105 (184)
T smart00178 56 --------------LAI---GNIKFTTFDLGGHQQ-------------ARRLWKDYFPEVNGIVYLVDAYDKERFAESKR 105 (184)
T ss_pred --------------EEE---CCEEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECCcHHHHHHHHH
Confidence 011 235689999999532 2556778999999988876554321 11111
Q ss_pred H-HHHHHHhCCCCCceEEEeccCcccC
Q 006928 192 A-IKLAREVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 192 ~-l~l~~~~d~~~~rti~VltK~D~~~ 217 (625)
. .++.+...-.+.|+++|+||+|+..
T Consensus 106 ~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 106 ELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHcChhhcCCCEEEEEeCccccC
Confidence 1 1122111224789999999999854
No 119
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.14 E-value=4.8e-10 Score=105.92 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=69.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
.-+|+|+|++++|||||++++++..|-+......+... .
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~---~-------------------------------------- 43 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEF---L-------------------------------------- 43 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEE---E--------------------------------------
Confidence 46899999999999999999998876321111000000 0
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SDA 192 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~-~~~ 192 (625)
...+.+ ......+.|+||||- +....+...|++.+|++|++.+..+.+ +.. ..+
T Consensus 44 ----------~~~~~~-~~~~~~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 99 (170)
T cd04116 44 ----------NKDLEV-DGHFVTLQIWDTAGQ-------------ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNW 99 (170)
T ss_pred ----------EEEEEE-CCeEEEEEEEeCCCh-------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHH
Confidence 000111 112246789999992 334667788999999877755433221 111 111
Q ss_pred HH-HHHHhC---CCCCceEEEeccCcccC
Q 006928 193 IK-LAREVD---PTGERTFGVLTKLDLMD 217 (625)
Q Consensus 193 l~-l~~~~d---~~~~rti~VltK~D~~~ 217 (625)
.. +.+... +.+.|.++|.||.|+..
T Consensus 100 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (170)
T cd04116 100 KKEFIYYADVKEPESFPFVVLGNKNDIPE 128 (170)
T ss_pred HHHHHHhcccccCCCCcEEEEEECccccc
Confidence 11 122111 34679999999999874
No 120
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.14 E-value=3.3e-10 Score=107.21 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=79.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
..|++||++|+|||||++++++..+ |....+ |-. ..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~-t~~---~~--------------------------------------- 38 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PERTEA-TIG---VD--------------------------------------- 38 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCcccc-cee---EE---------------------------------------
Confidence 4799999999999999999998765 322110 000 00
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
.....+.+. .....+.++||||-.. .-..+...|++++|++|++++..+ .-.......+
T Consensus 39 -------~~~~~~~~~-~~~~~~~i~Dt~G~~~------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~ 97 (170)
T cd04115 39 -------FRERTVEID-GERIKVQLWDTAGQER------------FRKSMVQHYYRNVHAVVFVYDVTN-MASFHSLPSW 97 (170)
T ss_pred -------EEEEEEEEC-CeEEEEEEEeCCChHH------------HHHhhHHHhhcCCCEEEEEEECCC-HHHHHhHHHH
Confidence 000011111 1224688999999321 112466788899999888665543 2222222223
Q ss_pred HHHh----CCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCC
Q 006928 196 AREV----DPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRS 244 (625)
Q Consensus 196 ~~~~----d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 244 (625)
...+ .....|+++|.||+|+........+...........+|+.+.+.+
T Consensus 98 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (170)
T cd04115 98 IEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred HHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccC
Confidence 2222 234689999999999875432111111100112335677666554
No 121
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.14 E-value=3.8e-10 Score=106.95 Aligned_cols=117 Identities=22% Similarity=0.271 Sum_probs=69.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|++||++++|||||++++++..| +... .|+.-.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~---------------------------------------- 35 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNY-----KATIGV---------------------------------------- 35 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCC-----CCceee----------------------------------------
Confidence 589999999999999999999875 3221 121000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc-HHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT-SDAIK 194 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~-~~~l~ 194 (625)
+.....+.+.+ ....+.|+||||.. ....+...|++++|++++++...+. .+.. ..++.
T Consensus 36 -----~~~~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~ 96 (170)
T cd04108 36 -----DFEMERFEILG-VPFSLQLWDTAGQE-------------RFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLE 96 (170)
T ss_pred -----EEEEEEEEECC-EEEEEEEEeCCChH-------------HHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHH
Confidence 00001111111 12468999999942 3356778889999987776544331 1211 11222
Q ss_pred HH-HHhCCCCCceEEEeccCcccCc
Q 006928 195 LA-REVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 195 l~-~~~d~~~~rti~VltK~D~~~~ 218 (625)
.. +...+...++++|.||.|+.+.
T Consensus 97 ~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 97 DALKENDPSSVLLFLVGTKKDLSSP 121 (170)
T ss_pred HHHHhcCCCCCeEEEEEEChhcCcc
Confidence 22 2233444568999999998654
No 122
>PLN03110 Rab GTPase; Provisional
Probab=99.14 E-value=4.7e-10 Score=110.70 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=73.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
.-.|++||++++|||||+++|++..+ +... .|+.-
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~-----~~t~g--------------------------------------- 46 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEF-CLES-----KSTIG--------------------------------------- 46 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCC-----CCcee---------------------------------------
Confidence 34899999999999999999999875 2111 11000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SDA 192 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~-~~~ 192 (625)
+......+.+. .....+.|+||||- +.+..+...|++.++++|+++...+.. +.. ..+
T Consensus 47 ------~~~~~~~v~~~-~~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~ 106 (216)
T PLN03110 47 ------VEFATRTLQVE-GKTVKAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRW 106 (216)
T ss_pred ------EEEEEEEEEEC-CEEEEEEEEECCCc-------------HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHH
Confidence 00000011111 12246889999992 234667788999999877765543221 111 234
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
+..++...+.+.+.++|.||+|+...
T Consensus 107 ~~~~~~~~~~~~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 107 LRELRDHADSNIVIMMAGNKSDLNHL 132 (216)
T ss_pred HHHHHHhCCCCCeEEEEEEChhcccc
Confidence 44445555567899999999998543
No 123
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.14 E-value=5.5e-10 Score=103.39 Aligned_cols=113 Identities=22% Similarity=0.275 Sum_probs=68.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+++|.+|||||||+++|.|..+ +... .+|-..
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~-~~~~-~~t~~~-------------------------------------------- 34 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQF-SEDT-IPTVGF-------------------------------------------- 34 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCC-CcCc-cCCCCc--------------------------------------------
Confidence 489999999999999999999875 2211 111111
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~ 196 (625)
. ... +.. +...+.++||||.. ....+...|++.+|++++++. ++............
T Consensus 35 -----~--~~~--~~~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~ii~v~d-~~~~~~~~~~~~~~ 90 (159)
T cd04159 35 -----N--MRK--VTK-GNVTLKVWDLGGQP-------------RFRSMWERYCRGVNAIVYVVD-AADRTALEAAKNEL 90 (159)
T ss_pred -----c--eEE--EEE-CCEEEEEEECCCCH-------------hHHHHHHHHHhcCCEEEEEEE-CCCHHHHHHHHHHH
Confidence 0 000 111 12568999999942 235667788999998777554 44321111111111
Q ss_pred HHh----CCCCCceEEEeccCcccCcc
Q 006928 197 REV----DPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 197 ~~~----d~~~~rti~VltK~D~~~~~ 219 (625)
..+ ...+.|.++|+||+|+.+..
T Consensus 91 ~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 91 HDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred HHHHcChhhcCCCEEEEEeCccccCCc
Confidence 111 12467999999999987653
No 124
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.13 E-value=4.9e-10 Score=105.63 Aligned_cols=114 Identities=21% Similarity=0.290 Sum_probs=70.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+++|+.|+|||||++++.+..| |.... .|.....
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~~~~~-~~~~~~~------------------------------------------ 37 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-PENVP-RVLPEIT------------------------------------------ 37 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CccCC-CcccceE------------------------------------------
Confidence 689999999999999999999875 32211 1100000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH----HH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS----DA 192 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~----~~ 192 (625)
+...+. .....+.++||||.... ......++..+|++++++ +++..-+.. .+
T Consensus 38 ---------~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~-d~~~~~s~~~~~~~~ 93 (166)
T cd01893 38 ---------IPADVT-PERVPTTIVDTSSRPQD-------------RANLAAEIRKANVICLVY-SVDRPSTLERIRTKW 93 (166)
T ss_pred ---------eeeeec-CCeEEEEEEeCCCchhh-------------hHHHhhhcccCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 001111 12246889999995421 334566788999877765 444322222 23
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
...++...+ +.|+++|+||+|+.+..
T Consensus 94 ~~~i~~~~~-~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 94 LPLIRRLGV-KVPIILVGNKSDLRDGS 119 (166)
T ss_pred HHHHHHhCC-CCCEEEEEEchhccccc
Confidence 334454444 78999999999997653
No 125
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.12 E-value=3.4e-10 Score=106.88 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=43.9
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HHHHHHHHH-hCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SDAIKLARE-VDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~-~~~l~l~~~-~d~~~~rti~VltK 212 (625)
..+.++||||..+ ...+...|++.++.+++++...+.. +.. ..+...... ....+.|.++|.||
T Consensus 49 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 115 (168)
T cd04177 49 CDLEILDTAGTEQ-------------FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNK 115 (168)
T ss_pred EEEEEEeCCCccc-------------chhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEC
Confidence 4678999999432 2456777888899887765433311 111 112222222 33457899999999
Q ss_pred CcccCcc
Q 006928 213 LDLMDKG 219 (625)
Q Consensus 213 ~D~~~~~ 219 (625)
.|+....
T Consensus 116 ~D~~~~~ 122 (168)
T cd04177 116 ADLEDDR 122 (168)
T ss_pred hhccccC
Confidence 9987543
No 126
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.12 E-value=6e-10 Score=106.35 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=84.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+++|.+|+|||||++++++..+ +....+.+..... .
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~-~---------------------------------------- 40 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFS-K---------------------------------------- 40 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEE-E----------------------------------------
Confidence 689999999999999999998864 3222111111100 0
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH----
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA---- 192 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~---- 192 (625)
.+.+ ......+.+|||||..+ +..+...+...+++++++++..+. ...+.+
T Consensus 41 ----------~~~~-~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~ 95 (180)
T cd04137 41 ----------IIRY-KGQDYHLEIVDTAGQDE-------------YSILPQKYSIGIHGYILVYSVTSR-KSFEVVKVIY 95 (180)
T ss_pred ----------EEEE-CCEEEEEEEEECCChHh-------------hHHHHHHHHhhCCEEEEEEECCCH-HHHHHHHHHH
Confidence 0001 11124578999999432 234455677889987776654432 111122
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (625)
..+++.....+.|.|+|+||+|+..................+..++.+...+..++.+....+...
T Consensus 96 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (180)
T cd04137 96 DKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEE 161 (180)
T ss_pred HHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 223343444578999999999986533211111110011223445666666555555554444433
No 127
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.12 E-value=3.6e-10 Score=103.51 Aligned_cols=24 Identities=17% Similarity=0.536 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
.|++||++|+|||||+|+|+|..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 589999999999999999998764
No 128
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.12 E-value=4e-10 Score=105.20 Aligned_cols=70 Identities=21% Similarity=0.342 Sum_probs=44.4
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--HHHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--SDAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~--~~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.|+||||... +..+...|++.+|++|+++...+.. +.. .....+.+.....+.|+++|+||
T Consensus 43 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd04151 43 LKFQVWDLGGQTS-------------IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANK 109 (158)
T ss_pred EEEEEEECCCCHH-------------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeC
Confidence 4689999999532 2567788999999888766543311 110 11111222222246899999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+.+.
T Consensus 110 ~Dl~~~ 115 (158)
T cd04151 110 QDMPGA 115 (158)
T ss_pred CCCCCC
Confidence 998754
No 129
>PTZ00369 Ras-like protein; Provisional
Probab=99.12 E-value=3.9e-10 Score=108.78 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=42.9
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc-c-cHHHHHHHHHh-CCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI-A-TSDAIKLAREV-DPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~-~-~~~~l~l~~~~-d~~~~rti~VltK 212 (625)
..+.|+||||... ...+...|++.+|++|++++..+.+- . ...+....... ...+.|.++|.||
T Consensus 53 ~~l~i~Dt~G~~~-------------~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 119 (189)
T PTZ00369 53 CLLDILDTAGQEE-------------YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNK 119 (189)
T ss_pred EEEEEEeCCCCcc-------------chhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 3578999999432 24566779999998887665444221 1 11122222222 2346789999999
Q ss_pred CcccC
Q 006928 213 LDLMD 217 (625)
Q Consensus 213 ~D~~~ 217 (625)
+|+..
T Consensus 120 ~Dl~~ 124 (189)
T PTZ00369 120 CDLDS 124 (189)
T ss_pred ccccc
Confidence 99854
No 130
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.12 E-value=7.7e-10 Score=107.23 Aligned_cols=69 Identities=14% Similarity=0.239 Sum_probs=46.7
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
...+.||||||..+ +..++..|++.+|++++++.. ..+..... ..+.+.+...+.|.++|+||+|
T Consensus 64 ~~~~~l~DtpG~~~-------------~~~~~~~~~~~~d~~ilV~d~-~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~D 128 (194)
T cd01891 64 DTKINIVDTPGHAD-------------FGGEVERVLSMVDGVLLLVDA-SEGPMPQT-RFVLKKALELGLKPIVVINKID 128 (194)
T ss_pred CEEEEEEECCCcHH-------------HHHHHHHHHHhcCEEEEEEEC-CCCccHHH-HHHHHHHHHcCCCEEEEEECCC
Confidence 46789999999532 355678899999988776554 43322221 2233444445789999999999
Q ss_pred ccCc
Q 006928 215 LMDK 218 (625)
Q Consensus 215 ~~~~ 218 (625)
+...
T Consensus 129 l~~~ 132 (194)
T cd01891 129 RPDA 132 (194)
T ss_pred CCCC
Confidence 9754
No 131
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.11 E-value=2.6e-10 Score=118.89 Aligned_cols=133 Identities=30% Similarity=0.426 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCc-----ccccccccccccEEEEEeec
Q 006928 6 SLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDF-----LPRGSGIVTRRPLVLQLHQT 80 (625)
Q Consensus 6 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~-----lP~~~~~~Tr~p~~~~l~~~ 80 (625)
++-..++++++.+..+... .+ .|+|+|..|+||||+||||-|..- -|+|..-+|..|
T Consensus 16 ~~~~~~s~i~~~l~~~~~~---------~l-~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~-------- 77 (376)
T PF05049_consen 16 NLQEVVSKIREALKDIDNA---------PL-NIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP-------- 77 (376)
T ss_dssp -HHHHHHHHHHHHHHHHH-----------E-EEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS---------
T ss_pred CHHHHHHHHHHHHHHhhcC---------ce-EEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC--------
Confidence 4556777888877777642 23 899999999999999999988632 111111112222
Q ss_pred CCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHH
Q 006928 81 EGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVE 160 (625)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~ 160 (625)
. ....|+.|+++|||+||+...... ..+
T Consensus 78 ----------------------------------~-------------~Y~~p~~pnv~lWDlPG~gt~~f~-----~~~ 105 (376)
T PF05049_consen 78 ----------------------------------T-------------PYPHPKFPNVTLWDLPGIGTPNFP-----PEE 105 (376)
T ss_dssp ----------------------------------E-------------EEE-SS-TTEEEEEE--GGGSS-------HHH
T ss_pred ----------------------------------e-------------eCCCCCCCCCeEEeCCCCCCCCCC-----HHH
Confidence 1 145678899999999998764332 111
Q ss_pred HHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 161 DIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 161 ~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
.++++ -+..-|.+|+ +.+. .+...++. +++++...|++..+|-||+|.
T Consensus 106 Yl~~~---~~~~yD~fii-i~s~--rf~~ndv~-La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 106 YLKEV---KFYRYDFFII-ISSE--RFTENDVQ-LAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp HHHHT---TGGG-SEEEE-EESS--S--HHHHH-HHHHHHHTT-EEEEEE--HHH
T ss_pred HHHHc---cccccCEEEE-EeCC--CCchhhHH-HHHHHHHcCCcEEEEEecccc
Confidence 11111 1346786555 4332 35555554 889998899999999999995
No 132
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.11 E-value=9.2e-10 Score=106.10 Aligned_cols=113 Identities=15% Similarity=0.248 Sum_probs=70.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.-+.|+++|++|||||||+++|++..+.+ ..+|..|...
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~---~~~T~~~~~~-------------------------------------- 56 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ---HVPTLHPTSE-------------------------------------- 56 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccCcceE--------------------------------------
Confidence 56799999999999999999999876411 1223222110
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
.+.+ +...+.++|+||-. ..+.+...|++.+|.+|++++..+.. .-....
T Consensus 57 -------------~i~~---~~~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~iilV~D~~~~~-s~~~~~ 106 (190)
T cd00879 57 -------------ELTI---GNIKFKTFDLGGHE-------------QARRLWKDYFPEVDGIVFLVDAADPE-RFQESK 106 (190)
T ss_pred -------------EEEE---CCEEEEEEECCCCH-------------HHHHHHHHHhccCCEEEEEEECCcHH-HHHHHH
Confidence 1111 12467899999932 12456778999999888766544321 111111
Q ss_pred HH----HHHhCCCCCceEEEeccCcccC
Q 006928 194 KL----AREVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 194 ~l----~~~~d~~~~rti~VltK~D~~~ 217 (625)
.. .+.....+.|+++|+||+|+..
T Consensus 107 ~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 107 EELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 12 2222234689999999999864
No 133
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.11 E-value=2.3e-09 Score=114.40 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=32.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEE
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 74 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~ 74 (625)
.+|++||.+|+|||||+|+|++.++...+...||..|+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999998644455668888854
No 134
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.11 E-value=7.6e-10 Score=112.96 Aligned_cols=136 Identities=20% Similarity=0.330 Sum_probs=78.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccccc-ccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV-TRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~-Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
.|+|||..|+|||||+|+|++..+.+.+.... +..+ .
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~-----------------------------------------~- 43 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEH-----------------------------------------I- 43 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccc-----------------------------------------c-
Confidence 79999999999999999999998755432111 0000 0
Q ss_pred CCCCccccccEEEEEecCC-CCCcEEEeCCCCcccCCCC-CCccHHHHHHHHHHHhh------------c--CCCEEEEE
Q 006928 116 GKSKQISNIPIQLSIYSPN-VVNLTLIDLPGLTKVAVEG-QPESIVEDIENMVRSYV------------E--KPSCIILA 179 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~-~~~ltlvDlPGi~~~~~~~-q~~~~~~~i~~~v~~yi------------~--~~~~iIl~ 179 (625)
....+-......+...+ ...+++|||||+....... .-+.+.+.+.+....|+ . ++|+++++
T Consensus 44 --~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~ 121 (276)
T cd01850 44 --DKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYF 121 (276)
T ss_pred --CCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEE
Confidence 00000011111122111 1469999999997654321 11223333333333333 2 35666666
Q ss_pred EecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 180 ISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 180 v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
+.+....+...+ +++++.+.. +.++|.|+||+|++..
T Consensus 122 i~~~~~~l~~~D-~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 122 IEPTGHGLKPLD-IEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred EeCCCCCCCHHH-HHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 666555555554 447777764 7899999999999864
No 135
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.11 E-value=4e-10 Score=108.98 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=42.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.|+||||..+ ...+...|++++|++++++. .+..-+-. .++..++...+ +.|+++|.||
T Consensus 50 ~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~iilv~d-~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK 114 (193)
T cd04118 50 VTLGIWDTAGSER-------------YEAMSRIYYRGAKAAIVCYD-LTDSSSFERAKFWVKELQNLEE-HCKIYLCGTK 114 (193)
T ss_pred EEEEEEECCCchh-------------hhhhhHhhcCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEc
Confidence 3478999999432 24456678889998877654 33221111 22333333332 6899999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+.+.
T Consensus 115 ~Dl~~~ 120 (193)
T cd04118 115 SDLIEQ 120 (193)
T ss_pred cccccc
Confidence 998654
No 136
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.11 E-value=5.4e-10 Score=104.16 Aligned_cols=70 Identities=26% Similarity=0.348 Sum_probs=45.3
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH----HHHHHhCCCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI----KLAREVDPTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l----~l~~~~d~~~~rti~Vlt 211 (625)
..+.++||||... ...+...++..+|+++++++..+.+ .-..+. .+.+.....+.|+++|+|
T Consensus 43 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~D~~~~~-~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd00878 43 VSFTVWDVGGQDK-------------IRPLWKHYYENTNGIIFVVDSSDRE-RIEEAKEELHKLLNEEELKGVPLLIFAN 108 (158)
T ss_pred EEEEEEECCCChh-------------hHHHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhCcccCCCcEEEEee
Confidence 5789999999432 2456678889999888766554421 111121 222323345789999999
Q ss_pred cCcccCcc
Q 006928 212 KLDLMDKG 219 (625)
Q Consensus 212 K~D~~~~~ 219 (625)
|+|+....
T Consensus 109 K~D~~~~~ 116 (158)
T cd00878 109 KQDLPGAL 116 (158)
T ss_pred ccCCcccc
Confidence 99987643
No 137
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.11 E-value=4.3e-10 Score=112.08 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
+|+++|.+|+|||||+|+|+|...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~ 25 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS 25 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999863
No 138
>PLN03108 Rab family protein; Provisional
Probab=99.10 E-value=9.4e-10 Score=108.05 Aligned_cols=118 Identities=18% Similarity=0.244 Sum_probs=71.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
.-.|+|+|++++|||||+++|++..|-|......+ . .
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~--~---~-------------------------------------- 42 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--V---E-------------------------------------- 42 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--c---e--------------------------------------
Confidence 35799999999999999999999876332111000 0 0
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---H
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---D 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~ 191 (625)
+ ....+.+.+. ...+.++||||.. ....+...|+..+|++|+++...+.. ... .
T Consensus 43 ------~--~~~~i~~~~~-~i~l~l~Dt~G~~-------------~~~~~~~~~~~~ad~~vlv~D~~~~~-s~~~l~~ 99 (210)
T PLN03108 43 ------F--GARMITIDNK-PIKLQIWDTAGQE-------------SFRSITRSYYRGAAGALLVYDITRRE-TFNHLAS 99 (210)
T ss_pred ------E--EEEEEEECCE-EEEEEEEeCCCcH-------------HHHHHHHHHhccCCEEEEEEECCcHH-HHHHHHH
Confidence 0 0001111111 1357899999932 23456678889999888766544321 111 2
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++..+........|+++|.||+|+...
T Consensus 100 ~~~~~~~~~~~~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 100 WLEDARQHANANMTIMLIGNKCDLAHR 126 (210)
T ss_pred HHHHHHHhcCCCCcEEEEEECccCccc
Confidence 222233333446889999999998754
No 139
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.10 E-value=6e-10 Score=108.36 Aligned_cols=69 Identities=12% Similarity=0.155 Sum_probs=43.7
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH----HHHHhCCCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK----LAREVDPTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~----l~~~~d~~~~rti~Vlt 211 (625)
..+.|+||||.... ..+...|+..+|++|++++ ++.......... +.+.....+.|+|+|+|
T Consensus 47 ~~l~i~D~~G~~~~-------------~~~~~~~~~~ad~vilv~d-~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~N 112 (198)
T cd04147 47 LTLDILDTSGSYSF-------------PAMRKLSIQNSDAFALVYA-VDDPESFEEVERLREEILEVKEDKFVPIVVVGN 112 (198)
T ss_pred EEEEEEECCCchhh-------------hHHHHHHhhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 46889999995431 3455678899998887664 433222222211 22222335789999999
Q ss_pred cCcccCc
Q 006928 212 KLDLMDK 218 (625)
Q Consensus 212 K~D~~~~ 218 (625)
|+|+...
T Consensus 113 K~Dl~~~ 119 (198)
T cd04147 113 KADSLEE 119 (198)
T ss_pred ccccccc
Confidence 9998753
No 140
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.10 E-value=8.3e-10 Score=103.99 Aligned_cols=112 Identities=18% Similarity=0.274 Sum_probs=70.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
||+++|++++|||||++++++..+ +.. ..|+. |
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~-----~~pt~-----------------------------------------g 33 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LES-----VVPTT-----------------------------------------G 33 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-ccc-----ccccC-----------------------------------------C
Confidence 689999999999999999998764 211 11200 0
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~ 196 (625)
+. . +.+.. ....+.++||||-.. .+.+...|++++|++|++++..+. .....+..+.
T Consensus 34 ----~~--~--~~i~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~ii~V~D~t~~-~s~~~~~~~l 90 (164)
T cd04162 34 ----FN--S--VAIPT-QDAIMELLEIGGSQN-------------LRKYWKRYLSGSQGLIFVVDSADS-ERLPLARQEL 90 (164)
T ss_pred ----cc--e--EEEee-CCeEEEEEECCCCcc-------------hhHHHHHHHhhCCEEEEEEECCCH-HHHHHHHHHH
Confidence 00 0 11222 235689999999432 245667899999998876654432 2112222222
Q ss_pred HHh--CCCCCceEEEeccCcccCc
Q 006928 197 REV--DPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 197 ~~~--d~~~~rti~VltK~D~~~~ 218 (625)
..+ ...+.|.++|.||.|+...
T Consensus 91 ~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 91 HQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHhCCCCCcEEEEEeCcCCcCC
Confidence 222 1247899999999998654
No 141
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.09 E-value=9.2e-10 Score=103.26 Aligned_cols=144 Identities=14% Similarity=0.193 Sum_probs=81.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+|+|++++|||||++.+++..|.|... .|..+ .
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~t~~~---~---------------------------------------- 36 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHI--STIGV---D---------------------------------------- 36 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCC--Cceee---E----------------------------------------
Confidence 58999999999999999999987633211 11111 0
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH-
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL- 195 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l- 195 (625)
.....+.+.+ ....+.++||||-. ....+...|+.++|+++++++..+. -+-.....+
T Consensus 37 ------~~~~~~~~~~-~~~~l~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~-~sf~~~~~~~ 95 (161)
T cd04117 37 ------FKMKTIEVDG-IKVRIQIWDTAGQE-------------RYQTITKQYYRRAQGIFLVYDISSE-RSYQHIMKWV 95 (161)
T ss_pred ------EEEEEEEECC-EEEEEEEEeCCCcH-------------hHHhhHHHHhcCCcEEEEEEECCCH-HHHHHHHHHH
Confidence 0000111111 12457899999932 2255677889999988776653332 122222222
Q ss_pred --HHHhCCCCCceEEEeccCcccCccc---c-HHHHHhCcccccCCCeEEEEeCChhhhhc
Q 006928 196 --AREVDPTGERTFGVLTKLDLMDKGT---N-ALEVLEGRSYRLQHPWVGIVNRSQADINK 250 (625)
Q Consensus 196 --~~~~d~~~~rti~VltK~D~~~~~~---~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (625)
++...+...+.++|.||.|+..... + ...+. ...+.+|+.+......++.+
T Consensus 96 ~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 96 SDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLA----KEYGMDFFETSACTNSNIKE 152 (161)
T ss_pred HHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 2234445678999999999865432 1 11111 12335666666555444433
No 142
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.09 E-value=1.6e-10 Score=111.51 Aligned_cols=131 Identities=22% Similarity=0.310 Sum_probs=75.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
...|+|+|..++|||||+++|++..- ..++.- ..+.-....+..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~------~~~~~~------------------------------~~~~~~~~~~~~ 46 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAG------AIDKRG------------------------------IEETKNAFLDKH 46 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHT------SSSSHH------------------------------HHHHHHCHHHSS
T ss_pred EEEEEEECCCCCCcEeechhhhhhcc------cccccc------------------------------cccccccccccc
Confidence 45799999999999999999997642 111100 000000000000
Q ss_pred -hCCCCccccccEEEEEe-cCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 115 -TGKSKQISNIPIQLSIY-SPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 115 -~g~~~~~s~~~i~l~i~-~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
.....+++-+.-..... ......++|+||||-. +. ...+...+..+|++|++| ++..+...+.
T Consensus 47 ~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~------------~f-~~~~~~~~~~~D~ailvV-da~~g~~~~~- 111 (188)
T PF00009_consen 47 PEERERGITIDLSFISFEKNENNRKITLIDTPGHE------------DF-IKEMIRGLRQADIAILVV-DANDGIQPQT- 111 (188)
T ss_dssp HHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH------------HH-HHHHHHHHTTSSEEEEEE-ETTTBSTHHH-
T ss_pred chhhhcccccccccccccccccccceeeccccccc------------ce-eecccceecccccceeee-eccccccccc-
Confidence 00012233333333333 3456789999999932 22 333445588999877754 5655554443
Q ss_pred HHHHHHhCCCCCceEEEeccCccc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLM 216 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~ 216 (625)
.+.++.+...+.|.|+|+||+|+.
T Consensus 112 ~~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 112 EEHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHHHHHHTT-SEEEEEETCTSS
T ss_pred ccccccccccccceEEeeeeccch
Confidence 234555555678899999999998
No 143
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.09 E-value=5.5e-10 Score=109.50 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=48.3
Q ss_pred CccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--HHHHH
Q 006928 119 KQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--AIKLA 196 (625)
Q Consensus 119 ~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~--~l~l~ 196 (625)
.+++.+.....+.. +...+.|+||||... . ...+..++..+|++|+++ ++...+..+. ...++
T Consensus 61 rg~T~~~~~~~~~~-~~~~~~liDTpG~~~------------~-~~~~~~~~~~ad~~llVv-D~~~~~~~~~~~~~~~~ 125 (208)
T cd04166 61 QGITIDVAYRYFST-PKRKFIIADTPGHEQ------------Y-TRNMVTGASTADLAILLV-DARKGVLEQTRRHSYIL 125 (208)
T ss_pred CCcCeecceeEEec-CCceEEEEECCcHHH------------H-HHHHHHhhhhCCEEEEEE-ECCCCccHhHHHHHHHH
Confidence 34555554444433 456899999999521 1 222345778999877755 4554443322 22233
Q ss_pred HHhCCCC-CceEEEeccCcccCc
Q 006928 197 REVDPTG-ERTFGVLTKLDLMDK 218 (625)
Q Consensus 197 ~~~d~~~-~rti~VltK~D~~~~ 218 (625)
+. .+ .+.|+|+||+|+...
T Consensus 126 ~~---~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 126 SL---LGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred HH---cCCCcEEEEEEchhcccC
Confidence 33 23 357789999999753
No 144
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.09 E-value=5.7e-10 Score=105.59 Aligned_cols=69 Identities=13% Similarity=0.229 Sum_probs=43.5
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHh----CCCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV----DPTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~----d~~~~rti~Vlt 211 (625)
..+.++||||... ...+...|++.+|++|+++...+. -.-.++..+...+ ...+.|+++|.|
T Consensus 43 ~~i~l~Dt~G~~~-------------~~~~~~~~~~~ad~ii~V~D~s~~-~s~~~~~~~~~~~~~~~~~~~~piilv~N 108 (169)
T cd04158 43 LKFTIWDVGGKHK-------------LRPLWKHYYLNTQAVVFVVDSSHR-DRVSEAHSELAKLLTEKELRDALLLIFAN 108 (169)
T ss_pred EEEEEEECCCChh-------------cchHHHHHhccCCEEEEEEeCCcH-HHHHHHHHHHHHHhcChhhCCCCEEEEEe
Confidence 5689999999542 145667888999998886654432 1112222222222 123478999999
Q ss_pred cCcccCc
Q 006928 212 KLDLMDK 218 (625)
Q Consensus 212 K~D~~~~ 218 (625)
|.|+.+.
T Consensus 109 K~Dl~~~ 115 (169)
T cd04158 109 KQDVAGA 115 (169)
T ss_pred CcCcccC
Confidence 9998654
No 145
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.08 E-value=5.5e-10 Score=105.66 Aligned_cols=113 Identities=18% Similarity=0.238 Sum_probs=70.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
...|+++|.+|+|||||+++|.+..+.. ..|+.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-------~~~t~---------------------------------------- 41 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTV---------------------------------------- 41 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-------ccCCc----------------------------------------
Confidence 4689999999999999999998765411 11210
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
| +... . +.. ....+.++||||.. ....+...|++++|++|++++..+. ..-..+.+
T Consensus 42 -g----~~~~--~--~~~-~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~a~~ii~v~D~t~~-~s~~~~~~ 97 (168)
T cd04149 42 -G----FNVE--T--VTY-KNVKFNVWDVGGQD-------------KIRPLWRHYYTGTQGLIFVVDSADR-DRIDEARQ 97 (168)
T ss_pred -c----cceE--E--EEE-CCEEEEEEECCCCH-------------HHHHHHHHHhccCCEEEEEEeCCch-hhHHHHHH
Confidence 0 0000 0 111 23568999999943 2355667899999998887664432 22222222
Q ss_pred HHHHh-C---CCCCceEEEeccCcccCc
Q 006928 195 LAREV-D---PTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 195 l~~~~-d---~~~~rti~VltK~D~~~~ 218 (625)
...++ . ..+.|.++|.||+|+.+.
T Consensus 98 ~~~~~~~~~~~~~~piilv~NK~Dl~~~ 125 (168)
T cd04149 98 ELHRIINDREMRDALLLVFANKQDLPDA 125 (168)
T ss_pred HHHHHhcCHhhcCCcEEEEEECcCCccC
Confidence 22222 1 235799999999998653
No 146
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.08 E-value=6.7e-10 Score=105.64 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=43.3
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH----HHHHhCCCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK----LAREVDPTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~----l~~~~d~~~~rti~Vlt 211 (625)
..+.++||||... +..+...|++.+|++|++++..+.+ .-..+.. +.+.....+.|.++|+|
T Consensus 59 ~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~vi~V~D~s~~~-~~~~~~~~l~~~~~~~~~~~~p~viv~N 124 (174)
T cd04153 59 IRFLMWDIGGQES-------------LRSSWNTYYTNTDAVILVIDSTDRE-RLPLTKEELYKMLAHEDLRKAVLLVLAN 124 (174)
T ss_pred eEEEEEECCCCHH-------------HHHHHHHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHhchhhcCCCEEEEEE
Confidence 5689999999532 2455677889999888866544321 1111111 22211223589999999
Q ss_pred cCcccCc
Q 006928 212 KLDLMDK 218 (625)
Q Consensus 212 K~D~~~~ 218 (625)
|+|+...
T Consensus 125 K~Dl~~~ 131 (174)
T cd04153 125 KQDLKGA 131 (174)
T ss_pred CCCCCCC
Confidence 9998653
No 147
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.07 E-value=3.5e-10 Score=106.70 Aligned_cols=116 Identities=23% Similarity=0.295 Sum_probs=67.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+++|.+|+|||||+++|++..+ +.. ..|+.......
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~-~~~-----~~~~~~~~~~~------------------------------------ 39 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF-PTE-----YVPTVFDNYSA------------------------------------ 39 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCC-----CCCceeeeeEE------------------------------------
Confidence 589999999999999999999876 211 11211110000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--HHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--SDAI 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~--~~~l 193 (625)
.+.+ ......+.++|+||.... ..+...+++.+|++++++...+.. +.. ..++
T Consensus 40 ----------~~~~-~~~~~~l~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 95 (171)
T cd00157 40 ----------TVTV-DGKQVNLGLWDTAGQEEY-------------DRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWI 95 (171)
T ss_pred ----------EEEE-CCEEEEEEEEeCCCcccc-------------cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 0000 011235889999996532 122334668899877766544311 111 1122
Q ss_pred HHHHHhCCCCCceEEEeccCcccCcc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.......+ +.|+++|+||+|+.+..
T Consensus 96 ~~~~~~~~-~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 96 PEIRHYCP-NVPIILVGTKIDLRDDE 120 (171)
T ss_pred HHHHhhCC-CCCEEEEEccHHhhhch
Confidence 22222223 69999999999998654
No 148
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.07 E-value=5.8e-10 Score=110.33 Aligned_cols=75 Identities=23% Similarity=0.234 Sum_probs=49.0
Q ss_pred EecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhh-cCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEE
Q 006928 130 IYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV-EKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFG 208 (625)
Q Consensus 130 i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi-~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~ 208 (625)
++......++||||||.. +....+..... ..+|.+++ |+++..+...++. .++..+...+.|.++
T Consensus 78 ~~~~~~~~i~liDtpG~~------------~~~~~~~~~~~~~~~D~~ll-Vvda~~g~~~~d~-~~l~~l~~~~ip~iv 143 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHE------------RYLKTTLFGLTGYAPDYAML-VVAANAGIIGMTK-EHLGLALALNIPVFV 143 (224)
T ss_pred eeeeCCcEEEEEECCCcH------------HHHHHHHHhhcccCCCEEEE-EEECCCCCcHHHH-HHHHHHHHcCCCEEE
Confidence 344455789999999942 22334433322 36887666 5566665554443 366666667899999
Q ss_pred EeccCcccCc
Q 006928 209 VLTKLDLMDK 218 (625)
Q Consensus 209 VltK~D~~~~ 218 (625)
|+||+|+++.
T Consensus 144 vvNK~D~~~~ 153 (224)
T cd04165 144 VVTKIDLAPA 153 (224)
T ss_pred EEECccccCH
Confidence 9999999764
No 149
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.06 E-value=1.2e-09 Score=105.24 Aligned_cols=103 Identities=24% Similarity=0.217 Sum_probs=63.0
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK 212 (625)
..+.|+||||- +....+...|++.+|++||+++..+ ..+-.. ++..+....+ +.+.|+|.||
T Consensus 55 ~~l~iwDt~G~-------------~~~~~l~~~~~~~ad~illVfD~t~-~~Sf~~~~~w~~~i~~~~~-~~piilVGNK 119 (189)
T cd04121 55 VKLQLWDTSGQ-------------GRFCTIFRSYSRGAQGIILVYDITN-RWSFDGIDRWIKEIDEHAP-GVPKILVGNR 119 (189)
T ss_pred EEEEEEeCCCc-------------HHHHHHHHHHhcCCCEEEEEEECcC-HHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 56889999993 2346677889999998887665433 222222 2333333333 6899999999
Q ss_pred CcccCccc----cHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHH
Q 006928 213 LDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (625)
Q Consensus 213 ~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (625)
.|+..... +...+. ...+..|+.+.+....++++....+..
T Consensus 120 ~DL~~~~~v~~~~~~~~a----~~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 120 LHLAFKRQVATEQAQAYA----ERNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred ccchhccCCCHHHHHHHH----HHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99965322 122222 123456777777776666665555543
No 150
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.06 E-value=4e-10 Score=111.92 Aligned_cols=152 Identities=21% Similarity=0.314 Sum_probs=86.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+-|.+||-||||||||||||+..+-=-.....+|-.| ++
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P---~i------------------------------------ 235 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRP---HI------------------------------------ 235 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeecc---cc------------------------------------
Confidence 356788999999999999999998762111223455555 11
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--cccHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IATSD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d--~~~~~ 191 (625)
| .+...+..++++-|+|||+..+..+..- ---..+.|++++.+++ |++.+.. ....+
T Consensus 236 --G------------~v~yddf~q~tVADiPGiI~GAh~nkGl------G~~FLrHiER~~~l~f-VvD~s~~~~~~p~~ 294 (366)
T KOG1489|consen 236 --G------------TVNYDDFSQITVADIPGIIEGAHMNKGL------GYKFLRHIERCKGLLF-VVDLSGKQLRNPWQ 294 (366)
T ss_pred --c------------eeeccccceeEeccCccccccccccCcc------cHHHHHHHHhhceEEE-EEECCCcccCCHHH
Confidence 1 0333344569999999999987653211 1223456678886544 5555543 11111
Q ss_pred HHH-HHHHhCC-----CCCceEEEeccCcccCccccHHHHHhCcccccCCC-eEEEEeCChhhh
Q 006928 192 AIK-LAREVDP-----TGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHP-WVGIVNRSQADI 248 (625)
Q Consensus 192 ~l~-l~~~~d~-----~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~ 248 (625)
.++ +..++.. ...+.++|+||+|+.+...+.+.-+ ...+..+ .++|...+++++
T Consensus 295 ~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L---~~~lq~~~V~pvsA~~~egl 355 (366)
T KOG1489|consen 295 QLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSL---AKRLQNPHVVPVSAKSGEGL 355 (366)
T ss_pred HHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHH---HHHcCCCcEEEeeeccccch
Confidence 121 3333321 2467999999999974433332222 2234444 455555555443
No 151
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.06 E-value=9.3e-10 Score=111.88 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=53.8
Q ss_pred ccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHh
Q 006928 120 QISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV 199 (625)
Q Consensus 120 ~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~ 199 (625)
++|-+.....+... ...++||||||..+ +...+.++++.+|++|++| ++......+. ..+++.+
T Consensus 49 giti~~~~~~~~~~-~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~ailVV-Da~~g~~~~t-~~~~~~~ 112 (270)
T cd01886 49 GITIQSAATTCFWK-DHRINIIDTPGHVD-------------FTIEVERSLRVLDGAVAVF-DAVAGVEPQT-ETVWRQA 112 (270)
T ss_pred CcCeeccEEEEEEC-CEEEEEEECCCcHH-------------HHHHHHHHHHHcCEEEEEE-ECCCCCCHHH-HHHHHHH
Confidence 34444333333333 46799999999543 1234678889999877755 5555554433 2355555
Q ss_pred CCCCCceEEEeccCcccCc
Q 006928 200 DPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 200 d~~~~rti~VltK~D~~~~ 218 (625)
...+.|.++++||+|+...
T Consensus 113 ~~~~~p~ivviNK~D~~~a 131 (270)
T cd01886 113 DRYNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHcCCCEEEEEECCCCCCC
Confidence 5668899999999998753
No 152
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.05 E-value=6.7e-10 Score=104.43 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=42.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HHHHHHHhC--CCCCceEEEe
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIKLAREVD--PTGERTFGVL 210 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~l~l~~~~d--~~~~rti~Vl 210 (625)
..+.|+||||..... ......+++.+|++|++++. +..-+-.. +...+.... ..+.|.++|.
T Consensus 47 ~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~ 113 (165)
T cd04146 47 VSLEILDTAGQQQAD------------TEQLERSIRWADGFVLVYSI-TDRSSFDEISQLKQLIREIKKRDREIPVILVG 113 (165)
T ss_pred EEEEEEECCCCcccc------------cchHHHHHHhCCEEEEEEEC-CCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 357899999965311 12345678889988776544 33222121 223334333 3468899999
Q ss_pred ccCcccCc
Q 006928 211 TKLDLMDK 218 (625)
Q Consensus 211 tK~D~~~~ 218 (625)
||+|+...
T Consensus 114 nK~Dl~~~ 121 (165)
T cd04146 114 NKADLLHY 121 (165)
T ss_pred ECCchHHh
Confidence 99998643
No 153
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.05 E-value=1.3e-09 Score=122.42 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=61.4
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH--HHHHHHHHhCCCCCc-eEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGER-TFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--~~l~l~~~~d~~~~r-ti~VltK 212 (625)
..++|||+||. ... ......++.++|+++++| +++.++..+ +.+.+++ ..+.+ .|+|+||
T Consensus 50 ~~v~~iDtPGh------------e~f-~~~~~~g~~~aD~aILVV-Da~~G~~~qT~ehl~il~---~lgi~~iIVVlNK 112 (581)
T TIGR00475 50 YRLGFIDVPGH------------EKF-ISNAIAGGGGIDAALLVV-DADEGVMTQTGEHLAVLD---LLGIPHTIVVITK 112 (581)
T ss_pred EEEEEEECCCH------------HHH-HHHHHhhhccCCEEEEEE-ECCCCCcHHHHHHHHHHH---HcCCCeEEEEEEC
Confidence 67899999992 222 333456778899877754 555443322 3333333 34667 9999999
Q ss_pred CcccCccc------cHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHHH
Q 006928 213 LDLMDKGT------NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (625)
Q Consensus 213 ~D~~~~~~------~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (625)
+|+.+... +..+++.+........++.+...+..++.+....+....
T Consensus 113 ~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 113 ADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence 99986532 112223221111134566666666666666555544433
No 154
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.05 E-value=1.5e-09 Score=104.28 Aligned_cols=115 Identities=18% Similarity=0.260 Sum_probs=68.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+|+|++++|||||++++.+..| +.. ..|+... . |.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~~~-----~~~t~~~--~------~~----------------------------- 38 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-PEE-----YVPTVFE--N------YV----------------------------- 38 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-CCC-----CCCeeee--e------eE-----------------------------
Confidence 699999999999999999999875 322 1221111 0 00
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH----H
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD----A 192 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~----~ 192 (625)
..+.........+.|+||||.. ....+...|++.+|++|+++...+ ..+-.. +
T Consensus 39 ---------~~i~~~~~~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~ii~v~d~~~-~~s~~~~~~~~ 95 (187)
T cd04132 39 ---------TNIQGPNGKIIELALWDTAGQE-------------EYDRLRPLSYPDVDVLLICYAVDN-PTSLDNVEDKW 95 (187)
T ss_pred ---------EEEEecCCcEEEEEEEECCCch-------------hHHHHHHHhCCCCCEEEEEEECCC-HHHHHHHHHHH
Confidence 0001111122468899999932 224556668899998877655433 211111 2
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
+...+... .+.|.|+|.||.|+.+.
T Consensus 96 ~~~~~~~~-~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 96 FPEVNHFC-PGTPIMLVGLKTDLRKD 120 (187)
T ss_pred HHHHHHhC-CCCCEEEEEeChhhhhC
Confidence 22222222 36899999999998754
No 155
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.05 E-value=7.1e-10 Score=107.31 Aligned_cols=128 Identities=17% Similarity=0.185 Sum_probs=73.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccc-cccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
.|+++|..++|||||+++|++..- ..|..- .+.. ..|... .
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~-~~g~~~~~~~~-------------------------~~d~~~------------~ 45 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLA-KKGGAKFKKYD-------------------------EIDKAP------------E 45 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-hcccccccccc-------------------------cccCCh------------h
Confidence 699999999999999999997520 111000 0000 000000 0
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
....++|-+...+... .+...++||||||.. +.+.. +...+..+|+++++| ++..+...++. .+
T Consensus 46 E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~------------~~~~~-~~~~~~~~D~~ilVv-da~~g~~~~~~-~~ 109 (195)
T cd01884 46 EKARGITINTAHVEYE-TANRHYAHVDCPGHA------------DYIKN-MITGAAQMDGAILVV-SATDGPMPQTR-EH 109 (195)
T ss_pred hhhcCccEEeeeeEec-CCCeEEEEEECcCHH------------HHHHH-HHHHhhhCCEEEEEE-ECCCCCcHHHH-HH
Confidence 0112333333333332 345689999999953 22232 355667899877754 56555544432 34
Q ss_pred HHHhCCCCCc-eEEEeccCcccCc
Q 006928 196 AREVDPTGER-TFGVLTKLDLMDK 218 (625)
Q Consensus 196 ~~~~d~~~~r-ti~VltK~D~~~~ 218 (625)
++.+...+.+ .|+|+||+|++..
T Consensus 110 ~~~~~~~~~~~iIvviNK~D~~~~ 133 (195)
T cd01884 110 LLLARQVGVPYIVVFLNKADMVDD 133 (195)
T ss_pred HHHHHHcCCCcEEEEEeCCCCCCc
Confidence 5555556776 7799999999753
No 156
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.05 E-value=2e-09 Score=120.13 Aligned_cols=134 Identities=19% Similarity=0.247 Sum_probs=76.6
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
+..|.|+++|++++|||||||+|.|..+.....|..|+-...... .. .
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v-~~-------------------------------~ 49 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEI-PM-------------------------------D 49 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEe-ee-------------------------------c
Confidence 368999999999999999999999987643333333332100000 00 0
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
...+. .....-..++. ...+.++||||||.. .+..+...+++.+|+++|++ +++.+...+.
T Consensus 50 ~~~~~---~~~~~~~~~v~-~~~~~l~~iDTpG~e-------------~f~~l~~~~~~~aD~~IlVv-D~~~g~~~qt- 110 (590)
T TIGR00491 50 VIEGI---CGDLLKKFKIR-LKIPGLLFIDTPGHE-------------AFTNLRKRGGALADLAILIV-DINEGFKPQT- 110 (590)
T ss_pred ccccc---ccccccccccc-cccCcEEEEECCCcH-------------hHHHHHHHHHhhCCEEEEEE-ECCcCCCHhH-
Confidence 00000 00000000011 112469999999932 23455667888999877755 5544333322
Q ss_pred HHHHHHhCCCCCceEEEeccCcccC
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~ 217 (625)
...+..+...+.|.++|+||+|+.+
T Consensus 111 ~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 111 QEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHHcCCCEEEEEECCCccc
Confidence 2233334445789999999999974
No 157
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.05 E-value=1.3e-09 Score=123.72 Aligned_cols=122 Identities=17% Similarity=0.321 Sum_probs=77.3
Q ss_pred cCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006928 32 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (625)
Q Consensus 32 ~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (625)
....|.|+|+|..++|||||+++|.+..+.....+..|.-
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~---------------------------------------- 280 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQK---------------------------------------- 280 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccc----------------------------------------
Confidence 3578999999999999999999999876511111101100
Q ss_pred hhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006928 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (625)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~ 191 (625)
+....+.+.. ......++||||||. +.+..+...++..+|++||+| ++......+
T Consensus 281 ---------i~~~~v~~~~-~~~~~kItfiDTPGh-------------e~F~~mr~rg~~~aDiaILVV-DA~dGv~~Q- 335 (742)
T CHL00189 281 ---------IGAYEVEFEY-KDENQKIVFLDTPGH-------------EAFSSMRSRGANVTDIAILII-AADDGVKPQ- 335 (742)
T ss_pred ---------cceEEEEEEe-cCCceEEEEEECCcH-------------HHHHHHHHHHHHHCCEEEEEE-ECcCCCChh-
Confidence 0000111111 112367999999993 334667778889999888866 554433322
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
..+.++.+...+.|+|+|+||+|+...
T Consensus 336 T~E~I~~~k~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 336 TIEAINYIQAANVPIIVAINKIDKANA 362 (742)
T ss_pred hHHHHHHHHhcCceEEEEEECCCcccc
Confidence 223344455568899999999999753
No 158
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.04 E-value=6.4e-10 Score=105.47 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=42.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccH--HHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATS--DAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~~--~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.++||||.... ..+...+++.+|++|+++...+. .+... .++.......+ +.|+++|.||
T Consensus 46 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK 111 (174)
T smart00174 46 VELGLWDTAGQEDY-------------DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NTPIILVGTK 111 (174)
T ss_pred EEEEEEECCCCccc-------------chhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecC
Confidence 46899999994321 33455678899988876654331 11111 12222333333 6899999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+...
T Consensus 112 ~Dl~~~ 117 (174)
T smart00174 112 LDLRED 117 (174)
T ss_pred hhhhhC
Confidence 999764
No 159
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.04 E-value=2.7e-09 Score=105.60 Aligned_cols=109 Identities=12% Similarity=0.056 Sum_probs=59.1
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc-CCCEEEEEEecCCCccccH---HHHHHHHHhC-CCCCceEEEe
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE-KPSCIILAISPANQDIATS---DAIKLAREVD-PTGERTFGVL 210 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~-~~~~iIl~v~~a~~d~~~~---~~l~l~~~~d-~~~~rti~Vl 210 (625)
..+.|+||||.. ..+. ..++. ++|++|+++...+ .-+-. .++..+.... ..+.|+|+|.
T Consensus 50 ~~l~i~Dt~G~~------------~~~~---~~~~~~~ad~iilV~d~td-~~S~~~~~~~~~~l~~~~~~~~~piilV~ 113 (221)
T cd04148 50 STLVVIDHWEQE------------MWTE---DSCMQYQGDAFVVVYSVTD-RSSFERASELRIQLRRNRQLEDRPIILVG 113 (221)
T ss_pred EEEEEEeCCCcc------------hHHH---hHHhhcCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 568999999953 1112 23444 8998777654433 22222 2222233332 2468999999
Q ss_pred ccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHHHH
Q 006928 211 TKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRK 260 (625)
Q Consensus 211 tK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (625)
||+|+........+.........+.+|+.+......++++....+.....
T Consensus 114 NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 114 NKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred EChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 99998764321111111001123446777777666677666665554443
No 160
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.04 E-value=9e-10 Score=108.87 Aligned_cols=106 Identities=14% Similarity=0.142 Sum_probs=60.5
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.|+||||-.+ ...+...|++.++++|++++..+. .+-. .++..++... .+.++++|.||
T Consensus 62 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilvfD~~~~-~s~~~i~~w~~~i~~~~-~~~piilvgNK 126 (219)
T PLN03071 62 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126 (219)
T ss_pred EEEEEEECCCchh-------------hhhhhHHHcccccEEEEEEeCCCH-HHHHHHHHHHHHHHHhC-CCCcEEEEEEc
Confidence 5789999999432 245667789999988876654432 2222 2333333333 36899999999
Q ss_pred CcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 006928 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (625)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (625)
+|+.+.......+ .. ....+..|+.+...+..++.+...++...
T Consensus 127 ~Dl~~~~v~~~~~-~~-~~~~~~~~~e~SAk~~~~i~~~f~~l~~~ 170 (219)
T PLN03071 127 VDVKNRQVKAKQV-TF-HRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (219)
T ss_pred hhhhhccCCHHHH-HH-HHhcCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 9986432111111 10 11223456666666666665555544433
No 161
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1e-09 Score=101.58 Aligned_cols=121 Identities=24% Similarity=0.277 Sum_probs=75.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..-.||++|+||+|||||+++..--.| -+ |-.|
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~f-d~-----~YqA----------------------------------------- 53 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKF-DN-----TYQA----------------------------------------- 53 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhh-cc-----cccc-----------------------------------------
Confidence 456899999999999999999987665 11 1111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC--ccccHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ--DIATSD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~--d~~~~~ 191 (625)
+-|++...-...+.+. ...|.+|||.| ++.++.++-+|++++.++|++.+-++. -..+..
T Consensus 54 ----TIGiDFlskt~~l~d~-~vrLQlWDTAG-------------QERFrslipsY~Rds~vaviVyDit~~~Sfe~t~k 115 (221)
T KOG0094|consen 54 ----TIGIDFLSKTMYLEDR-TVRLQLWDTAG-------------QERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSK 115 (221)
T ss_pred ----eeeeEEEEEEEEEcCc-EEEEEEEeccc-------------HHHHhhhhhhhccCCeEEEEEEeccccchHHHHHH
Confidence 0111111111122222 35789999999 788999999999999987665432221 122233
Q ss_pred HHHHHHHhC-CCCCceEEEeccCcccCcc
Q 006928 192 AIKLAREVD-PTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 192 ~l~l~~~~d-~~~~rti~VltK~D~~~~~ 219 (625)
|+.=++.-. ..+..+++|-||.||.++.
T Consensus 116 Wi~dv~~e~gs~~viI~LVGnKtDL~dkr 144 (221)
T KOG0094|consen 116 WIEDVRRERGSDDVIIFLVGNKTDLSDKR 144 (221)
T ss_pred HHHHHHhccCCCceEEEEEcccccccchh
Confidence 443333222 2235677888999999874
No 162
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.03 E-value=5.1e-09 Score=108.52 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=63.0
Q ss_pred EEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhCC
Q 006928 38 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGK 117 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~ 117 (625)
|++||.+|+|||||+|+|++.++-+.....||..|+.-...-.. ..|..++ +.....
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~---------~~~~~r~--------------~~~~~~ 57 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRV---------ECPCKEL--------------GVSCNP 57 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEec---------CCCchhh--------------hhhhcc
Confidence 58999999999999999999986444445688888543211100 0000000 000000
Q ss_pred CCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEec
Q 006928 118 SKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISP 182 (625)
Q Consensus 118 ~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~ 182 (625)
..+ ..+.+....++.|+||||++..+.. ...+.+...++++++|+++++|..
T Consensus 58 ~~~-------~~~~~~~~v~i~l~D~aGlv~ga~~------~~glg~~fL~~ir~aD~ii~Vvd~ 109 (318)
T cd01899 58 RYG-------KCIDGKRYVPVELIDVAGLVPGAHE------GKGLGNKFLDDLRDADALIHVVDA 109 (318)
T ss_pred ccc-------ccccCcCcceEEEEECCCCCCCccc------hhhHHHHHHHHHHHCCEEEEEEeC
Confidence 000 0011112346999999999865433 223445566789999998886654
No 163
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.03 E-value=1.9e-09 Score=104.29 Aligned_cols=67 Identities=22% Similarity=0.374 Sum_probs=40.8
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH--HHHHHHHHhCCCCCceEEEecc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--~~l~l~~~~d~~~~rti~VltK 212 (625)
...++||||||... .+.. ....+..+|++++++. +......+ +.+.++.. .+.+.++|+||
T Consensus 67 ~~~~~i~DtpG~~~------------~~~~-~~~~~~~~d~vi~VvD-~~~~~~~~~~~~~~~~~~---~~~~~iiv~NK 129 (192)
T cd01889 67 NLQITLVDCPGHAS------------LIRT-IIGGAQIIDLMLLVVD-ATKGIQTQTAECLVIGEI---LCKKLIVVLNK 129 (192)
T ss_pred CceEEEEECCCcHH------------HHHH-HHHHHhhCCEEEEEEE-CCCCccHHHHHHHHHHHH---cCCCEEEEEEC
Confidence 46799999999521 1122 2344567888777554 44433222 22323322 36799999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+...
T Consensus 130 ~Dl~~~ 135 (192)
T cd01889 130 IDLIPE 135 (192)
T ss_pred cccCCH
Confidence 999754
No 164
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.02 E-value=2.1e-09 Score=120.25 Aligned_cols=118 Identities=19% Similarity=0.305 Sum_probs=75.0
Q ss_pred cCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006928 32 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (625)
Q Consensus 32 ~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (625)
....|.|+++|+.++|||||+++|.+..+.....+..|.-.
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~i--------------------------------------- 124 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHI--------------------------------------- 124 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecc---------------------------------------
Confidence 35789999999999999999999998775221111111000
Q ss_pred hhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006928 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (625)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~ 191 (625)
| ...+..++...++||||||-.. +..+..++...+|.+||++ +++.....+
T Consensus 125 ----g----------~~~v~~~~~~~i~~iDTPGhe~-------------F~~~r~rga~~aDiaILVV-da~dgv~~q- 175 (587)
T TIGR00487 125 ----G----------AYHVENEDGKMITFLDTPGHEA-------------FTSMRARGAKVTDIVVLVV-AADDGVMPQ- 175 (587)
T ss_pred ----e----------EEEEEECCCcEEEEEECCCCcc-------------hhhHHHhhhccCCEEEEEE-ECCCCCCHh-
Confidence 0 0112222223799999999432 2445567788899888766 555433222
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccC
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~ 217 (625)
....++.....+.|+|+++||+|+..
T Consensus 176 T~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 176 TIEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred HHHHHHHHHHcCCCEEEEEECccccc
Confidence 22344445556789999999999864
No 165
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.01 E-value=4.1e-09 Score=100.96 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=45.3
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHh-C---CCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV-D---PTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~-d---~~~~rti~Vlt 211 (625)
..+.++|+||- +..+.+...|++++|++|++++..+. -.-..+......+ . ..+.|.++|.|
T Consensus 61 ~~~~i~D~~Gq-------------~~~~~~~~~~~~~a~~iI~V~D~s~~-~s~~~~~~~l~~~l~~~~~~~~piilv~N 126 (181)
T PLN00223 61 ISFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
T ss_pred EEEEEEECCCC-------------HHHHHHHHHHhccCCEEEEEEeCCcH-HHHHHHHHHHHHHhcCHhhCCCCEEEEEE
Confidence 56899999992 23467788899999998886654432 1222222222222 2 13678999999
Q ss_pred cCcccCc
Q 006928 212 KLDLMDK 218 (625)
Q Consensus 212 K~D~~~~ 218 (625)
|.|+.+.
T Consensus 127 K~Dl~~~ 133 (181)
T PLN00223 127 KQDLPNA 133 (181)
T ss_pred CCCCCCC
Confidence 9998654
No 166
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.01 E-value=1.5e-09 Score=121.95 Aligned_cols=108 Identities=22% Similarity=0.295 Sum_probs=66.3
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~--~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 213 (625)
..+.++||||..+..... .. +.+...|+. .+|.++++++ ++. .+..+.+..++...+.|+++|+||+
T Consensus 41 ~~i~lvDtPG~~~~~~~s----~~---e~v~~~~l~~~~aDvvI~VvD-at~---ler~l~l~~ql~~~~~PiIIVlNK~ 109 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTTFS----LE---EEVARDYLLNEKPDLVVNVVD-ASN---LERNLYLTLQLLELGIPMILALNLV 109 (591)
T ss_pred eEEEEEECCCccccCccc----hH---HHHHHHHHhhcCCCEEEEEec-CCc---chhhHHHHHHHHhcCCCEEEEEehh
Confidence 458999999987643321 11 234455653 6887766554 432 2233445556666789999999999
Q ss_pred cccCccccH--HHHHhCcccccCCCeEEEEeCChhhhhccCCHHHH
Q 006928 214 DLMDKGTNA--LEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (625)
Q Consensus 214 D~~~~~~~~--~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (625)
|+.++.... .+.+ ...++..++.+..++..++++..+....
T Consensus 110 Dl~~~~~i~~d~~~L---~~~lg~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 110 DEAEKKGIRIDEEKL---EERLGVPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred HHHHhCCChhhHHHH---HHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 997543211 1222 2234567788888887777766655543
No 167
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.01 E-value=3.3e-09 Score=100.42 Aligned_cols=114 Identities=24% Similarity=0.392 Sum_probs=69.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.-.+|+++|.+|||||||+++|.|..+ + +..| +
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~-~------~~~~-------t--------------------------------- 45 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI-S------HITP-------T--------------------------------- 45 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC-c------ccCC-------C---------------------------------
Confidence 356899999999999999999999754 1 0111 0
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
.++.-. . +.. ....+.++|+||.. .+..++..+++.+|+++++++..+.. .-....
T Consensus 46 -----~g~~~~--~--i~~-~~~~~~~~D~~G~~-------------~~~~~~~~~~~~~~~ii~v~D~~~~~-~~~~~~ 101 (173)
T cd04155 46 -----QGFNIK--T--VQS-DGFKLNVWDIGGQR-------------AIRPYWRNYFENTDCLIYVIDSADKK-RLEEAG 101 (173)
T ss_pred -----CCcceE--E--EEE-CCEEEEEEECCCCH-------------HHHHHHHHHhcCCCEEEEEEeCCCHH-HHHHHH
Confidence 000000 0 111 13568999999943 23456778889999877766543311 111111
Q ss_pred ----HHHHHhCCCCCceEEEeccCcccCc
Q 006928 194 ----KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ----~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+.+.....+.|+++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 102 AELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 1222222346899999999998754
No 168
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.01 E-value=4.8e-09 Score=100.59 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=43.9
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHh-CC---CCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV-DP---TGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~-d~---~~~rti~Vlt 211 (625)
..+.++||||.. ..+.+...|++.+|++|++++..+.+ ....+......+ .. ...|.++|.|
T Consensus 61 ~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~iI~v~D~t~~~-s~~~~~~~l~~~~~~~~~~~~piilv~N 126 (182)
T PTZ00133 61 LKFTMWDVGGQD-------------KLRPLWRHYYQNTNGLIFVVDSNDRE-RIGDAREELERMLSEDELRDAVLLVFAN 126 (182)
T ss_pred EEEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhCHhhcCCCEEEEEe
Confidence 568999999942 23567788999999988876544321 111222222222 21 3578999999
Q ss_pred cCcccC
Q 006928 212 KLDLMD 217 (625)
Q Consensus 212 K~D~~~ 217 (625)
|.|+.+
T Consensus 127 K~Dl~~ 132 (182)
T PTZ00133 127 KQDLPN 132 (182)
T ss_pred CCCCCC
Confidence 999864
No 169
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.01 E-value=2.6e-09 Score=101.74 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=44.8
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHh----CCCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV----DPTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~----d~~~~rti~Vlt 211 (625)
..+.|+||||..+ ...+...|++++|++|++++.++.+ .-..+.+....+ ...+.|.++|.|
T Consensus 57 ~~l~l~D~~G~~~-------------~~~~~~~~~~~ad~ii~v~D~t~~~-s~~~~~~~l~~~~~~~~~~~~piilv~N 122 (175)
T smart00177 57 ISFTVWDVGGQDK-------------IRPLWRHYYTNTQGLIFVVDSNDRD-RIDEAREELHRMLNEDELRDAVILVFAN 122 (175)
T ss_pred EEEEEEECCCChh-------------hHHHHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHhhCHhhcCCcEEEEEe
Confidence 5689999999432 2567788999999988866654322 122222222222 123578999999
Q ss_pred cCcccCc
Q 006928 212 KLDLMDK 218 (625)
Q Consensus 212 K~D~~~~ 218 (625)
|.|+.+.
T Consensus 123 K~Dl~~~ 129 (175)
T smart00177 123 KQDLPDA 129 (175)
T ss_pred CcCcccC
Confidence 9998653
No 170
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.00 E-value=1.8e-09 Score=123.64 Aligned_cols=117 Identities=17% Similarity=0.269 Sum_probs=74.3
Q ss_pred cCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006928 32 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (625)
Q Consensus 32 ~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (625)
....|.|+|+|..++|||||+++|.+.++. .+. .+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e-----~~--------------------------------------- 321 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGE-----AG--------------------------------------- 321 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccc-----cC---------------------------------------
Confidence 357899999999999999999999887651 110 01
Q ss_pred hhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006928 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (625)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~ 191 (625)
+++.+.-...+..+ ...++||||||... +..+...++..+|++||+| +++.....+
T Consensus 322 --------GIT~~iga~~v~~~-~~~ItfiDTPGhe~-------------F~~m~~rga~~aDiaILVV-dAddGv~~q- 377 (787)
T PRK05306 322 --------GITQHIGAYQVETN-GGKITFLDTPGHEA-------------FTAMRARGAQVTDIVVLVV-AADDGVMPQ- 377 (787)
T ss_pred --------ceeeeccEEEEEEC-CEEEEEEECCCCcc-------------chhHHHhhhhhCCEEEEEE-ECCCCCCHh-
Confidence 00000000112222 25689999999432 2445567788899887765 555433322
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccC
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~ 217 (625)
....++.+...+.|+|+|+||+|+..
T Consensus 378 T~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 378 TIEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred HHHHHHHHHhcCCcEEEEEECccccc
Confidence 22234445556789999999999964
No 171
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.00 E-value=3.1e-09 Score=101.91 Aligned_cols=67 Identities=21% Similarity=0.272 Sum_probs=43.1
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.++||+|-. ....+...|++++|+++++++..+. .+-. .++..++...+...+ |+|.||
T Consensus 49 ~~l~iwDt~G~~-------------~~~~~~~~~~~~a~~iilv~D~t~~-~s~~~i~~~~~~~~~~~~~~~p-ilVgnK 113 (182)
T cd04128 49 ITFSIWDLGGQR-------------EFINMLPLVCNDAVAILFMFDLTRK-STLNSIKEWYRQARGFNKTAIP-ILVGTK 113 (182)
T ss_pred EEEEEEeCCCch-------------hHHHhhHHHCcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhCCCCCE-EEEEEc
Confidence 468999999932 2355677899999988876654332 2222 233344444444445 789999
Q ss_pred CcccC
Q 006928 213 LDLMD 217 (625)
Q Consensus 213 ~D~~~ 217 (625)
+|+..
T Consensus 114 ~Dl~~ 118 (182)
T cd04128 114 YDLFA 118 (182)
T ss_pred hhccc
Confidence 99964
No 172
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.00 E-value=3.3e-09 Score=106.58 Aligned_cols=103 Identities=13% Similarity=0.157 Sum_probs=56.2
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHh------------CCCC
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV------------DPTG 203 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~------------d~~~ 203 (625)
..+.|+||||... ...+...|+..+|++|++++..+ .-+-.....+..++ ...+
T Consensus 48 ~~l~I~Dt~G~~~-------------~~~~~~~~~~~ad~iIlVfdv~~-~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~ 113 (247)
T cd04143 48 YQLDILDTSGNHP-------------FPAMRRLSILTGDVFILVFSLDN-RESFEEVCRLREQILETKSCLKNKTKENVK 113 (247)
T ss_pred EEEEEEECCCChh-------------hhHHHHHHhccCCEEEEEEeCCC-HHHHHHHHHHHHHHHHhhcccccccccCCC
Confidence 4688999999432 13445567889998877654333 22222222222222 1236
Q ss_pred CceEEEeccCcccCccc-c---HHHHHhCcccccCCCeEEEEeCChhhhhccCCHH
Q 006928 204 ERTFGVLTKLDLMDKGT-N---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (625)
Q Consensus 204 ~rti~VltK~D~~~~~~-~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (625)
.|+|+|.||+|+..... . ..+.+.. .....|+.+...+..++++....+
T Consensus 114 ~piIivgNK~Dl~~~~~v~~~ei~~~~~~---~~~~~~~evSAktg~gI~elf~~L 166 (247)
T cd04143 114 IPMVICGNKADRDFPREVQRDEVEQLVGG---DENCAYFEVSAKKNSNLDEMFRAL 166 (247)
T ss_pred CcEEEEEECccchhccccCHHHHHHHHHh---cCCCEEEEEeCCCCCCHHHHHHHH
Confidence 89999999999975322 1 1222211 113346666666655555444433
No 173
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.00 E-value=1.7e-09 Score=102.38 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=70.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
.-.|+++|++|+|||||++++++..|-|....+ |-.+
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~-T~~~------------------------------------------ 40 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSP-TIKP------------------------------------------ 40 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCC-ccCc------------------------------------------
Confidence 457999999999999999999998762122111 1100
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
.+.... +.+.+ ....+.++|++|-... ..+...|++++|++++++. ++..-.-.....
T Consensus 41 -----~~~~~~--~~~~~-~~~~l~~~d~~g~~~~-------------~~~~~~~~~~~d~~llv~d-~~~~~s~~~~~~ 98 (169)
T cd01892 41 -----RYAVNT--VEVYG-QEKYLILREVGEDEVA-------------ILLNDAELAACDVACLVYD-SSDPKSFSYCAE 98 (169)
T ss_pred -----ceEEEE--EEECC-eEEEEEEEecCCcccc-------------cccchhhhhcCCEEEEEEe-CCCHHHHHHHHH
Confidence 000000 11111 1245789999994321 3345667899998877654 433222222233
Q ss_pred HHHHhC-CCCCceEEEeccCcccCc
Q 006928 195 LAREVD-PTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 195 l~~~~d-~~~~rti~VltK~D~~~~ 218 (625)
+.+.+. ..+.|+++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 99 VYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred HHHHhccCCCCeEEEEEEccccccc
Confidence 444442 336899999999998654
No 174
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.99 E-value=2.7e-09 Score=99.91 Aligned_cols=70 Identities=16% Similarity=0.285 Sum_probs=45.0
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHh-C---CCCCceEEEe
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV-D---PTGERTFGVL 210 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~-d---~~~~rti~Vl 210 (625)
...+.|+||||.. ....+...|++++|++|++++..+.+ +-..+.+....+ . ....|.++|.
T Consensus 43 ~~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~~i~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~ 108 (159)
T cd04150 43 NISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLIFVVDSNDRE-RIGEAREELQRMLNEDELRDAVLLVFA 108 (159)
T ss_pred CEEEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhcHHhcCCCEEEEE
Confidence 3568999999943 23566778999999988866554321 122222222222 1 1347899999
Q ss_pred ccCcccCc
Q 006928 211 TKLDLMDK 218 (625)
Q Consensus 211 tK~D~~~~ 218 (625)
||.|+.+.
T Consensus 109 NK~Dl~~~ 116 (159)
T cd04150 109 NKQDLPNA 116 (159)
T ss_pred ECCCCCCC
Confidence 99998654
No 175
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.99 E-value=2.4e-09 Score=101.01 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=56.8
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK 212 (625)
..+.++||||.... ..+...|+..+|++|+++. .+...+-.. ++..++...+ +.|.++|.||
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK 113 (166)
T cd00877 49 IRFNVWDTAGQEKF-------------GGLRDGYYIGGQCAIIMFD-VTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNK 113 (166)
T ss_pred EEEEEEECCCChhh-------------ccccHHHhcCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEc
Confidence 46889999995321 2334567789998887665 443222222 2223333333 6899999999
Q ss_pred CcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHH
Q 006928 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (625)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (625)
+|+....... ....- .......|+.+.+.+..++.+....+.
T Consensus 114 ~Dl~~~~~~~-~~~~~-~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 114 VDIKDRKVKA-KQITF-HRKKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred hhcccccCCH-HHHHH-HHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence 9997432211 11110 011234466666666555554444443
No 176
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.98 E-value=4.9e-09 Score=96.50 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=24.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS 65 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~ 65 (625)
++|+++|.++||||||+|+|++.. +|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~ 30 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEY 30 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcC
Confidence 479999999999999999999987 45443
No 177
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.97 E-value=2e-09 Score=102.54 Aligned_cols=115 Identities=20% Similarity=0.263 Sum_probs=69.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+|||+.++|||||++++.+..| |... .|+.-.
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f-~~~~-----~pt~~~---------------------------------------- 36 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF-PSEY-----VPTVFD---------------------------------------- 36 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCC-----CCceee----------------------------------------
Confidence 699999999999999999998775 3221 121100
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccH--HHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATS--DAI 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~~--~~l 193 (625)
.+ ...+.+ +.....+.|+||||-.+ ...+...|++++|++|++++..+. .+..- .+.
T Consensus 37 ---~~---~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~ 96 (175)
T cd01874 37 ---NY---AVTVMI-GGEPYTLGLFDTAGQED-------------YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWV 96 (175)
T ss_pred ---ee---EEEEEE-CCEEEEEEEEECCCccc-------------hhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00 001111 11224688999999532 234556688999998887654332 12211 133
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
...+...+ +.|+|+|.||+|+.+.
T Consensus 97 ~~i~~~~~-~~piilvgnK~Dl~~~ 120 (175)
T cd01874 97 PEITHHCP-KTPFLLVGTQIDLRDD 120 (175)
T ss_pred HHHHHhCC-CCCEEEEEECHhhhhC
Confidence 33333333 5899999999998654
No 178
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.97 E-value=5.1e-09 Score=114.55 Aligned_cols=125 Identities=21% Similarity=0.263 Sum_probs=78.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
.+|+|||.+|+||||++|+|+|...+..+.. .+|..+..+.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~-------------------------------------- 160 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIE-------------------------------------- 160 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEE--------------------------------------
Confidence 3799999999999999999999986555431 2333321111
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCC---cccc
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQ---DIAT 189 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~--~~~~iIl~v~~a~~---d~~~ 189 (625)
+ ..+...+.+|||||+...... +...+.+...+..++. .+|. +|+|...+. +...
T Consensus 161 -~---------------~idG~~L~VIDTPGL~dt~~d---q~~neeILk~Ik~~Lsk~gpDV-VLlV~RLd~~~~D~eD 220 (763)
T TIGR00993 161 -G---------------LVQGVKIRVIDTPGLKSSASD---QSKNEKILSSVKKFIKKNPPDI-VLYVDRLDMQTRDSND 220 (763)
T ss_pred -E---------------EECCceEEEEECCCCCccccc---hHHHHHHHHHHHHHHhcCCCCE-EEEEEeCCCccccHHH
Confidence 0 012356999999999975332 2234455566667776 4775 455655432 2222
Q ss_pred HHHHHHHHHhCC--CCCceEEEeccCcccCc
Q 006928 190 SDAIKLAREVDP--TGERTFGVLTKLDLMDK 218 (625)
Q Consensus 190 ~~~l~l~~~~d~--~~~rti~VltK~D~~~~ 218 (625)
..+++.+..+-. .-.++|+|+|+.|.+++
T Consensus 221 ~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 221 LPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 234444444432 24789999999999964
No 179
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.97 E-value=2.7e-09 Score=97.14 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=46.2
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH----HHHHHhCCCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI----KLAREVDPTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l----~l~~~~d~~~~rti~Vlt 211 (625)
..++++|+||.... ......+++.+|++++++ +++.+....... .........+.++++|+|
T Consensus 45 ~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~n 110 (157)
T cd00882 45 VKLQIWDTAGQERF-------------RSLRRLYYRGADGIILVY-DVTDRESFENVKEWLLLILINKEGENIPIILVGN 110 (157)
T ss_pred EEEEEEecCChHHH-------------HhHHHHHhcCCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEe
Confidence 56899999996542 222366788999877755 444433333222 123334556899999999
Q ss_pred cCcccCccc
Q 006928 212 KLDLMDKGT 220 (625)
Q Consensus 212 K~D~~~~~~ 220 (625)
|+|+.....
T Consensus 111 k~D~~~~~~ 119 (157)
T cd00882 111 KIDLPEERV 119 (157)
T ss_pred ccccccccc
Confidence 999986543
No 180
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.97 E-value=4.5e-09 Score=106.80 Aligned_cols=135 Identities=14% Similarity=0.257 Sum_probs=76.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+++|.+++|||||+|+|+... |...+... +.-.. ..+....|+.... ..
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~------g~i~~~g~-v~~~~------------~~~~t~~D~~~~e------~~---- 54 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFG------GAIREAGA-VKARK------------SRKHATSDWMEIE------KQ---- 54 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhc------CCcccCce-ecccc------------cCCCccCCCcHHH------Hh----
Confidence 59999999999999999998653 22222220 00000 0011112222111 11
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~ 196 (625)
++..++.....++ . +...+.||||||..+ +...+..+++.+|++|+++ ++......+. ..+.
T Consensus 55 rg~si~~~~~~~~--~-~~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~IlVv-da~~g~~~~~-~~i~ 116 (267)
T cd04169 55 RGISVTSSVMQFE--Y-RDCVINLLDTPGHED-------------FSEDTYRTLTAVDSAVMVI-DAAKGVEPQT-RKLF 116 (267)
T ss_pred CCCCeEEEEEEEe--e-CCEEEEEEECCCchH-------------HHHHHHHHHHHCCEEEEEE-ECCCCccHHH-HHHH
Confidence 1122223333332 2 346799999999542 1234567788999887755 4444443332 2344
Q ss_pred HHhCCCCCceEEEeccCcccCc
Q 006928 197 REVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 197 ~~~d~~~~rti~VltK~D~~~~ 218 (625)
+.....+.|.++++||+|+...
T Consensus 117 ~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 117 EVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHhcCCCEEEEEECCccCCC
Confidence 4455567899999999998654
No 181
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.96 E-value=2.5e-09 Score=106.79 Aligned_cols=69 Identities=22% Similarity=0.186 Sum_probs=47.2
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
...+.||||||.... ...+..+++.+|++|+++ ++..+...+ ...+.+.+...+.|.++|+||+|
T Consensus 63 ~~~i~liDTPG~~~f-------------~~~~~~~l~~aD~~IlVv-d~~~g~~~~-~~~~~~~~~~~~~P~iivvNK~D 127 (237)
T cd04168 63 DTKVNLIDTPGHMDF-------------IAEVERSLSVLDGAILVI-SAVEGVQAQ-TRILWRLLRKLNIPTIIFVNKID 127 (237)
T ss_pred CEEEEEEeCCCccch-------------HHHHHHHHHHhCeEEEEE-eCCCCCCHH-HHHHHHHHHHcCCCEEEEEECcc
Confidence 367999999997531 334677889999888755 444444332 22344444456889999999999
Q ss_pred ccCc
Q 006928 215 LMDK 218 (625)
Q Consensus 215 ~~~~ 218 (625)
+...
T Consensus 128 ~~~a 131 (237)
T cd04168 128 RAGA 131 (237)
T ss_pred ccCC
Confidence 8753
No 182
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.94 E-value=9.1e-09 Score=100.43 Aligned_cols=117 Identities=18% Similarity=0.278 Sum_probs=71.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
|.|+++|..+||||||++.|.+..+-+.- .+-.|....
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~---~s~~~~~~~--------------------------------------- 38 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV---TSIEPNVAT--------------------------------------- 38 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc---CcEeecceE---------------------------------------
Confidence 78999999999999999999988652111 111110000
Q ss_pred CCCCccccccEEEEEec-CCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCC-CEEEEEEecCCCccccHHHH
Q 006928 116 GKSKQISNIPIQLSIYS-PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKP-SCIILAISPANQDIATSDAI 193 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~-~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~-~~iIl~v~~a~~d~~~~~~l 193 (625)
..... .....+.+||+||-.+ ++.+...|++.+ +++|+++.+....-...++.
T Consensus 39 ------------~~~~~~~~~~~~~l~D~pG~~~-------------~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~ 93 (203)
T cd04105 39 ------------FILNSEGKGKKFRLVDVPGHPK-------------LRDKLLETLKNSAKGIVFVVDSATFQKNLKDVA 93 (203)
T ss_pred ------------EEeecCCCCceEEEEECCCCHH-------------HHHHHHHHHhccCCEEEEEEECccchhHHHHHH
Confidence 00000 1234689999999432 356667888888 98888776655311111221
Q ss_pred HH----HH--HhCCCCCceEEEeccCcccCcc
Q 006928 194 KL----AR--EVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 194 ~l----~~--~~d~~~~rti~VltK~D~~~~~ 219 (625)
.+ .. .....+.|+++|.||.|+....
T Consensus 94 ~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 94 EFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 11 11 1123578999999999987643
No 183
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.93 E-value=6.5e-09 Score=101.53 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=40.7
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc--cHHHHHHHHHhCCCCCceEEEeccC
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA--TSDAIKLAREVDPTGERTFGVLTKL 213 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~--~~~~l~l~~~~d~~~~rti~VltK~ 213 (625)
..++||||||. +.+...+...+..+|.+++++........ +.+.+..+... ...+.++|+||+
T Consensus 83 ~~i~~iDtPG~-------------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~ 147 (203)
T cd01888 83 RHVSFVDCPGH-------------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKI 147 (203)
T ss_pred cEEEEEECCCh-------------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEch
Confidence 57899999992 12233445666788987776554321222 22333333322 124689999999
Q ss_pred cccCc
Q 006928 214 DLMDK 218 (625)
Q Consensus 214 D~~~~ 218 (625)
|+.+.
T Consensus 148 Dl~~~ 152 (203)
T cd01888 148 DLVKE 152 (203)
T ss_pred hccCH
Confidence 99754
No 184
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.93 E-value=5.7e-09 Score=102.91 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=43.0
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccH-HHHHHHHHhCCCCCceEEEeccC
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATS-DAIKLAREVDPTGERTFGVLTKL 213 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~~-~~l~l~~~~d~~~~rti~VltK~ 213 (625)
.++.||||||-.. ...+...|++++|++|+++...+. .+... .++....+....+.++|+|.||+
T Consensus 44 ~~l~iwDt~G~e~-------------~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~ 110 (220)
T cd04126 44 YNISIWDTAGREQ-------------FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKL 110 (220)
T ss_pred EEEEEEeCCCccc-------------chhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 4589999999432 245667789999988776543321 11111 11212222334467899999999
Q ss_pred cccC
Q 006928 214 DLMD 217 (625)
Q Consensus 214 D~~~ 217 (625)
|+.+
T Consensus 111 DL~~ 114 (220)
T cd04126 111 DLTE 114 (220)
T ss_pred cccc
Confidence 9975
No 185
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.93 E-value=6.1e-09 Score=98.77 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
..|+|+|++++|||||++++.+..|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~ 26 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF 26 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999998765
No 186
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.92 E-value=1e-08 Score=101.76 Aligned_cols=118 Identities=18% Similarity=0.236 Sum_probs=73.2
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
+..-.|++||+.++|||||++.+++..| +.. -.|+...
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~-----y~pTi~~------------------------------------ 48 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCY-PET-----YVPTVFE------------------------------------ 48 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCC-CCC-----cCCceee------------------------------------
Confidence 3445899999999999999999998875 322 1221110
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-- 189 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~-- 189 (625)
.+. ..+.+. .....|.||||||- +.+..+...|++++|++||+.+-.+.+ +..
T Consensus 49 -------~~~---~~i~~~-~~~v~l~iwDTaG~-------------e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~ 104 (232)
T cd04174 49 -------NYT---AGLETE-EQRVELSLWDTSGS-------------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSAL 104 (232)
T ss_pred -------eeE---EEEEEC-CEEEEEEEEeCCCc-------------hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHH
Confidence 000 011111 12246899999992 233566678999999888766543321 111
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccC
Q 006928 190 SDAIKLAREVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~ 217 (625)
..|...++...+ +.++|+|.||+|+.+
T Consensus 105 ~~w~~~i~~~~~-~~piilVgNK~DL~~ 131 (232)
T cd04174 105 KKWKAEIMDYCP-STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHHHHhCC-CCCEEEEEECccccc
Confidence 233444444444 578999999999854
No 187
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.92 E-value=3.9e-09 Score=100.20 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=42.2
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccH--HHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATS--DAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~~--~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.+|||||.... ..+...|++++|++|+++...+.. +... .++...+... .+.++++|.||
T Consensus 48 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK 113 (173)
T cd04130 48 VRLQLCDTAGQDEF-------------DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQ 113 (173)
T ss_pred EEEEEEECCCChhh-------------ccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeC
Confidence 45789999995321 333445889999888766443321 2111 2232333322 35899999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+...
T Consensus 114 ~Dl~~~ 119 (173)
T cd04130 114 ADLRTD 119 (173)
T ss_pred hhhccC
Confidence 998754
No 188
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.92 E-value=5.6e-09 Score=101.54 Aligned_cols=107 Identities=14% Similarity=0.175 Sum_probs=64.0
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.|+||||- +.+..+...|++++|++|+|+...+ ..+.. .+...++... .+.+.++|.||
T Consensus 44 ~~l~iwDt~G~-------------e~~~~l~~~~~~~ad~~ilV~D~t~-~~S~~~i~~w~~~i~~~~-~~~piilvgNK 108 (200)
T smart00176 44 IRFNVWDTAGQ-------------EKFGGLRDGYYIQGQCAIIMFDVTA-RVTYKNVPNWHRDLVRVC-ENIPIVLCGNK 108 (200)
T ss_pred EEEEEEECCCc-------------hhhhhhhHHHhcCCCEEEEEEECCC-hHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 56899999993 2346677889999998877654433 22222 2333333333 36899999999
Q ss_pred CcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHHH
Q 006928 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (625)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (625)
+|+....... +.+. .....+..|+.+...+..++.+....+....
T Consensus 109 ~Dl~~~~v~~-~~~~-~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 109 VDVKDRKVKA-KSIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred cccccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9986432111 1111 0112345677777777777666666555443
No 189
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.91 E-value=3.6e-09 Score=102.11 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=43.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccH--HHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATS--DAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~~--~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.|+||||-.. ...+...|++.+|++|++.+-.+. .+.+. .++..++...+ +.|+++|.||
T Consensus 48 ~~l~i~Dt~G~~~-------------~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK 113 (189)
T cd04134 48 IELSLWDTAGQEE-------------FDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVLVALK 113 (189)
T ss_pred EEEEEEECCCChh-------------ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 4689999999432 133445678899998876543332 22222 23333443333 6899999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+.+.
T Consensus 114 ~Dl~~~ 119 (189)
T cd04134 114 CDLREA 119 (189)
T ss_pred hhhccC
Confidence 999764
No 190
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.91 E-value=8.7e-09 Score=101.57 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=47.7
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
...+.||||||... +...+..+++.+|+++++| ++......+. ..+++.....+.|.|+|+||+|
T Consensus 72 ~~~i~iiDTPG~~~-------------f~~~~~~~l~~aD~~ilVv-D~~~g~~~~t-~~~l~~~~~~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVD-------------FSSEVTAALRLCDGALVVV-DAVEGVCVQT-ETVLRQALKERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCccc-------------cHHHHHHHHHhcCeeEEEE-ECCCCCCHHH-HHHHHHHHHcCCCEEEEEECCC
Confidence 45789999999653 2445778889999887755 5554443332 3355555556789999999999
Q ss_pred cc
Q 006928 215 LM 216 (625)
Q Consensus 215 ~~ 216 (625)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 86
No 191
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.90 E-value=6.6e-09 Score=98.46 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=41.5
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccH--HHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATS--DAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~~--~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.++||||-... ..+...+++.+|++|+++...+.. +... .+....+.. ..+.|.++|.||
T Consensus 48 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK 113 (174)
T cd04135 48 YLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQ 113 (174)
T ss_pred EEEEEEeCCCcccc-------------cccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEc
Confidence 34789999994331 223335678899877766433321 1111 123333333 457899999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+.+.
T Consensus 114 ~Dl~~~ 119 (174)
T cd04135 114 IDLRDD 119 (174)
T ss_pred hhhhcC
Confidence 998654
No 192
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.90 E-value=7.7e-09 Score=116.54 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=59.5
Q ss_pred CCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEec
Q 006928 133 PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLT 211 (625)
Q Consensus 133 ~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~r-ti~Vlt 211 (625)
++...++||||||. .+.+..| ...+..+|.++|+| +++.++..+.. +.+..+...+.+ .|+|+|
T Consensus 48 ~~g~~i~~IDtPGh------------e~fi~~m-~~g~~~~D~~lLVV-da~eg~~~qT~-ehl~il~~lgi~~iIVVlN 112 (614)
T PRK10512 48 PDGRVLGFIDVPGH------------EKFLSNM-LAGVGGIDHALLVV-ACDDGVMAQTR-EHLAILQLTGNPMLTVALT 112 (614)
T ss_pred CCCcEEEEEECCCH------------HHHHHHH-HHHhhcCCEEEEEE-ECCCCCcHHHH-HHHHHHHHcCCCeEEEEEE
Confidence 34456899999993 2333444 45578899877754 66655544322 122223333555 579999
Q ss_pred cCcccCccc------cHHHHHhCccccc-CCCeEEEEeCChhhhhccCCHHHH
Q 006928 212 KLDLMDKGT------NALEVLEGRSYRL-QHPWVGIVNRSQADINKNVDMIAA 257 (625)
Q Consensus 212 K~D~~~~~~------~~~~~l~~~~~~l-~~g~~~v~~~s~~~~~~~~~~~~~ 257 (625)
|+|+.++.. ++.+.+.+ ..+ ...++.|...+..+++.+.+.+..
T Consensus 113 KiDlv~~~~~~~v~~ei~~~l~~--~~~~~~~ii~VSA~tG~gI~~L~~~L~~ 163 (614)
T PRK10512 113 KADRVDEARIAEVRRQVKAVLRE--YGFAEAKLFVTAATEGRGIDALREHLLQ 163 (614)
T ss_pred CCccCCHHHHHHHHHHHHHHHHh--cCCCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 999986421 11122211 111 134566666666666655555543
No 193
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.90 E-value=1e-08 Score=100.91 Aligned_cols=133 Identities=20% Similarity=0.309 Sum_probs=74.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+|+|..++|||||+++|++.... .++.. .... ....+ .+... . .. .
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~------~~~~~-----~~~~---~~~~~--------~d~~~--~------e~--~ 49 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHD------LTPSG-----KDGW---KPLRY--------TDIRK--D------EQ--E 49 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCC------Ccccc-----cccC---CceeE--------CCCCH--H------HH--H
Confidence 4899999999999999999986531 11100 0000 00000 00000 0 00 0
Q ss_pred CCCccccccEEEEEec--CCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006928 117 KSKQISNIPIQLSIYS--PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~--~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
.+..+....+.+.... .....+.+|||||.... ...+..++..+|++++++. +....... ...
T Consensus 50 ~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f-------------~~~~~~~~~~aD~~llVvD-~~~~~~~~-~~~ 114 (213)
T cd04167 50 RGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNF-------------MDEVAAALRLSDGVVLVVD-VVEGVTSN-TER 114 (213)
T ss_pred cCccccccceeEEEEcCCCCEEEEEEEECCCCcch-------------HHHHHHHHHhCCEEEEEEE-CCCCCCHH-HHH
Confidence 1122333344443332 22357899999995431 3456788889998887665 43333222 223
Q ss_pred HHHHhCCCCCceEEEeccCccc
Q 006928 195 LAREVDPTGERTFGVLTKLDLM 216 (625)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~ 216 (625)
+.+.....+.+.++|+||+|++
T Consensus 115 ~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 115 LIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHHHcCCCEEEEEECcccC
Confidence 4444444568999999999986
No 194
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.90 E-value=8.9e-09 Score=98.68 Aligned_cols=115 Identities=19% Similarity=0.280 Sum_probs=71.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
..|+++|+.++|||||++++.+..| +... .|+...
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f-~~~~-----~pT~~~--------------------------------------- 40 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF-PENY-----VPTVFE--------------------------------------- 40 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCcc-----CCceee---------------------------------------
Confidence 3799999999999999999998875 3221 121100
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc--HHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT--SDA 192 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~--~~~ 192 (625)
.+. ..+.+ ......+.|+||+|- +....+...|++++|++|++.+-.+. .+.+ ..+
T Consensus 41 ----~~~---~~~~~-~~~~~~l~iwDtaG~-------------e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w 99 (182)
T cd04172 41 ----NYT---ASFEI-DTQRIELSLWDTSGS-------------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 99 (182)
T ss_pred ----eeE---EEEEE-CCEEEEEEEEECCCc-------------hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 000 01111 112246899999993 23355667789999998886654332 1221 233
Q ss_pred HHHHHHhCCCCCceEEEeccCcccC
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~ 217 (625)
...++...+ ..+.|+|.||.|+.+
T Consensus 100 ~~~i~~~~~-~~piilVgNK~DL~~ 123 (182)
T cd04172 100 KGEIQEFCP-NTKMLLVGCKSDLRT 123 (182)
T ss_pred HHHHHHHCC-CCCEEEEeEChhhhc
Confidence 334445444 589999999999864
No 195
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.89 E-value=1.6e-08 Score=96.29 Aligned_cols=69 Identities=23% Similarity=0.227 Sum_probs=44.0
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccH--HHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATS--DAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~~--~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.|+||||-.. ...+...|++++|++|+++...+. .+..- .+....+...+ ..|.++|.||
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK 114 (174)
T cd01871 49 VNLGLWDTAGQED-------------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTK 114 (174)
T ss_pred EEEEEEECCCchh-------------hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeC
Confidence 4678999999322 244556788999998886655432 11111 13333343333 6899999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+.+.
T Consensus 115 ~Dl~~~ 120 (174)
T cd01871 115 LDLRDD 120 (174)
T ss_pred hhhccC
Confidence 998653
No 196
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.89 E-value=5.6e-09 Score=105.64 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=61.0
Q ss_pred EEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhCC
Q 006928 38 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGK 117 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~ 117 (625)
|++||.||||||||+|+|+|.+.-+.+...||+-|..-...-. +.. +.. +..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~-------------d~r---~~~-----------l~~- 52 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVP-------------DER---LDK-----------LAE- 52 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEec-------------cch---hhh-----------HHH-
Confidence 5799999999999999999998744455668888844332110 000 000 000
Q ss_pred CCccccccEEEEEecCC---CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecC
Q 006928 118 SKQISNIPIQLSIYSPN---VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPA 183 (625)
Q Consensus 118 ~~~~s~~~i~l~i~~~~---~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a 183 (625)
++.|. ...+.|||+||++..... .+.+.+...+.++++|+++++| ++
T Consensus 53 ------------~~~~~k~~~~~i~lvD~pGl~~~a~~------~~glg~~fL~~i~~~D~li~VV-~~ 102 (274)
T cd01900 53 ------------IVKPKKIVPATIEFVDIAGLVKGASK------GEGLGNKFLSHIREVDAIAHVV-RC 102 (274)
T ss_pred ------------HhCCceeeeeEEEEEECCCcCCCCch------hhHHHHHHHHHHHhCCEEEEEE-eC
Confidence 11110 135899999999975443 2233344566778999877755 44
No 197
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.88 E-value=9.3e-09 Score=115.62 Aligned_cols=132 Identities=18% Similarity=0.292 Sum_probs=76.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
.-.|++||+.++|||||+++|+... +..++... . ..+.|.... ++.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~~--~------------------~~~~D~~~~--------Ere 48 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYT------GAISEREM--R------------------EQVLDSMDL--------ERE 48 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHc------CCCccccc--c------------------ccccCCChH--------HHh
Confidence 3469999999999999999998753 22222210 0 000010000 011
Q ss_pred hCCCCccccccEEEEEe--cCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 115 TGKSKQISNIPIQLSIY--SPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~--~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
.+.++....+.+... ......+.||||||..+ +...+..|++.+|++||++ +++.....+..
T Consensus 49 --rGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d-------------F~~~v~~~l~~aD~aILVv-Dat~g~~~qt~ 112 (595)
T TIGR01393 49 --RGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD-------------FSYEVSRSLAACEGALLLV-DAAQGIEAQTL 112 (595)
T ss_pred --cCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH-------------HHHHHHHHHHhCCEEEEEe-cCCCCCCHhHH
Confidence 122333444444433 22235789999999543 2455678899999887755 55554443332
Q ss_pred HHHHHHhCCCCCceEEEeccCcccC
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~ 217 (625)
..+.... ..+.+.|+|+||+|+.+
T Consensus 113 ~~~~~~~-~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 113 ANVYLAL-ENDLEIIPVINKIDLPS 136 (595)
T ss_pred HHHHHHH-HcCCCEEEEEECcCCCc
Confidence 2121112 24678999999999864
No 198
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.88 E-value=4e-08 Score=95.61 Aligned_cols=70 Identities=19% Similarity=0.132 Sum_probs=44.9
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HHHHHHHHHh--------------
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SDAIKLAREV-------------- 199 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~-~~~l~l~~~~-------------- 199 (625)
..+.|+||+|- +....+...|++++|++|++.+-.+.+ +.+ ..|+..+...
T Consensus 54 ~~l~IwDtaG~-------------e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~ 120 (202)
T cd04102 54 FFVELWDVGGS-------------ESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDY 120 (202)
T ss_pred EEEEEEecCCc-------------hhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 35789999993 233667778999999988866543321 111 2233333222
Q ss_pred -----CCCCCceEEEeccCcccCc
Q 006928 200 -----DPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 200 -----d~~~~rti~VltK~D~~~~ 218 (625)
.+...|+|+|.||.|+.+.
T Consensus 121 ~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 121 DSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred cccccCCCCceEEEEEECccchhh
Confidence 1235789999999999765
No 199
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.88 E-value=1.3e-08 Score=103.82 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=46.5
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
...++||||||... +...+..++..+|++++++ +++.....+ ...+.+.+...+.|.++|+||+|
T Consensus 63 ~~~i~liDtPG~~~-------------f~~~~~~~l~~aD~~i~Vv-d~~~g~~~~-~~~~~~~~~~~~~p~iivvNK~D 127 (268)
T cd04170 63 GHKINLIDTPGYAD-------------FVGETRAALRAADAALVVV-SAQSGVEVG-TEKLWEFADEAGIPRIIFINKMD 127 (268)
T ss_pred CEEEEEEECcCHHH-------------HHHHHHHHHHHCCEEEEEE-eCCCCCCHH-HHHHHHHHHHcCCCEEEEEECCc
Confidence 36799999999542 1344667888999877755 444433322 22344455556889999999999
Q ss_pred ccCc
Q 006928 215 LMDK 218 (625)
Q Consensus 215 ~~~~ 218 (625)
+...
T Consensus 128 ~~~~ 131 (268)
T cd04170 128 RERA 131 (268)
T ss_pred cCCC
Confidence 8754
No 200
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.88 E-value=6.6e-09 Score=98.97 Aligned_cols=115 Identities=25% Similarity=0.253 Sum_probs=71.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+++|+.++|||||+.+++...| +....+ |-..
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~~-Ti~~-------------------------------------------- 36 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIP-TVFD-------------------------------------------- 36 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCC-ccee--------------------------------------------
Confidence 589999999999999999998775 322111 1100
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc--HHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT--SDAI 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~--~~~l 193 (625)
.+. ..+.+. .....+.|+||+|-.+ ...+...|++++|++||+.+-.+. .+.+ ..+.
T Consensus 37 ---~~~---~~~~~~-~~~v~l~i~Dt~G~~~-------------~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~ 96 (176)
T cd04133 37 ---NFS---ANVSVD-GNTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFVLAFSLISRASYENVLKKWV 96 (176)
T ss_pred ---eeE---EEEEEC-CEEEEEEEEECCCCcc-------------ccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHH
Confidence 000 011121 1235789999999432 244566799999998886643322 1222 1233
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
..++...+ +.+.++|.||+|+.+.
T Consensus 97 ~~i~~~~~-~~piilvgnK~Dl~~~ 120 (176)
T cd04133 97 PELRHYAP-NVPIVLVGTKLDLRDD 120 (176)
T ss_pred HHHHHhCC-CCCEEEEEeChhhccC
Confidence 33444443 6899999999999654
No 201
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.87 E-value=2e-08 Score=97.09 Aligned_cols=116 Identities=23% Similarity=0.259 Sum_probs=70.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
-.|+++|+.++|||||+.++++..| |... .|+.-.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~--------------------------------------- 38 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEY-----IPTVFD--------------------------------------- 38 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcCC-----CCceEe---------------------------------------
Confidence 3799999999999999999998775 3221 221100
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccH--HH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATS--DA 192 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~~--~~ 192 (625)
.+. ..+.+ ......+.|+||||- +..+.+...|++++|++|++.+-.+.+ +.+- .+
T Consensus 39 ----~~~---~~~~~-~~~~~~l~i~Dt~G~-------------e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w 97 (191)
T cd01875 39 ----NYS---AQTAV-DGRTVSLNLWDTAGQ-------------EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKW 97 (191)
T ss_pred ----eeE---EEEEE-CCEEEEEEEEECCCc-------------hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 000 00112 112356899999993 334567778999999888866543321 1111 12
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
...++...+ +.|+++|.||.|+.+.
T Consensus 98 ~~~i~~~~~-~~piilvgNK~DL~~~ 122 (191)
T cd01875 98 HPEVCHHCP-NVPILLVGTKKDLRND 122 (191)
T ss_pred HHHHHhhCC-CCCEEEEEeChhhhcC
Confidence 222232223 6899999999999654
No 202
>PTZ00258 GTP-binding protein; Provisional
Probab=98.87 E-value=9.7e-09 Score=108.53 Aligned_cols=102 Identities=21% Similarity=0.285 Sum_probs=65.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+-.+|++||.||+|||||+|+|+|.+.-......||+.|..-.+.-. +..+ ..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~-------------d~r~--------------~~ 72 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVP-------------DERF--------------DW 72 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecc-------------cchh--------------hH
Confidence 55689999999999999999999987644455668888855442111 0000 00
Q ss_pred hhCCCCccccccEEEEEecC---CCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEe
Q 006928 114 ITGKSKQISNIPIQLSIYSP---NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAIS 181 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~---~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~ 181 (625)
+.. +..| ...++.||||||+...... .+.+.+.+...++++|+++++|.
T Consensus 73 l~~-------------~~~~~~~~~aqi~lvDtpGLv~ga~~------g~gLg~~fL~~Ir~aD~il~VVd 124 (390)
T PTZ00258 73 LCK-------------HFKPKSIVPAQLDITDIAGLVKGASE------GEGLGNAFLSHIRAVDGIYHVVR 124 (390)
T ss_pred HHH-------------HcCCcccCCCCeEEEECCCcCcCCcc------hhHHHHHHHHHHHHCCEEEEEEe
Confidence 000 1111 1246899999999975543 22334455667889998777554
No 203
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.9e-08 Score=93.75 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=83.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
-|-.|+|+|+.|+|||-|+-++.+..| |-..
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~------------------------------------------------ 38 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTF-TESY------------------------------------------------ 38 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCc-chhh------------------------------------------------
Confidence 466899999999999999999999876 2111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--- 190 (625)
..+-|+......+++.+.. ..|.+|||.| ++.++.++.+|.+++|.||++. +.+...+-.
T Consensus 39 --~sTIGVDf~~rt~e~~gk~-iKlQIWDTAG-------------QERFrtit~syYR~ahGii~vy-DiT~~~SF~~v~ 101 (205)
T KOG0084|consen 39 --ISTIGVDFKIRTVELDGKT-IKLQIWDTAG-------------QERFRTITSSYYRGAHGIIFVY-DITKQESFNNVK 101 (205)
T ss_pred --cceeeeEEEEEEeeecceE-EEEEeeeccc-------------cHHHhhhhHhhccCCCeEEEEE-EcccHHHhhhHH
Confidence 1122344444455555544 3799999999 5778899999999999988865 333222222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.|++-.+.......+.+.|-||+|+.+..
T Consensus 102 ~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~ 130 (205)
T KOG0084|consen 102 RWIQEIDRYASENVPKLLVGNKCDLTEKR 130 (205)
T ss_pred HHHHHhhhhccCCCCeEEEeeccccHhhe
Confidence 33333444445567899999999998764
No 204
>CHL00071 tufA elongation factor Tu
Probab=98.84 E-value=1.2e-08 Score=110.30 Aligned_cols=131 Identities=17% Similarity=0.188 Sum_probs=74.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
-.|+++|..++|||||+++|++..- . +..+.- .. |+. .|.. . .
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~-~----~~~~~~-----~~------~~~---------~d~~--~----------~ 55 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLA-A----KGGAKA-----KK------YDE---------IDSA--P----------E 55 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC-c----cccccc-----cc------ccc---------ccCC--h----------h
Confidence 3699999999999999999997531 0 000000 00 000 0000 0 0
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
....+++-+....... .+...++||||||.. +.+..+ ...+..+|+++++| ++...+..++. ..
T Consensus 56 e~~rg~T~~~~~~~~~-~~~~~~~~iDtPGh~------------~~~~~~-~~~~~~~D~~ilVv-da~~g~~~qt~-~~ 119 (409)
T CHL00071 56 EKARGITINTAHVEYE-TENRHYAHVDCPGHA------------DYVKNM-ITGAAQMDGAILVV-SAADGPMPQTK-EH 119 (409)
T ss_pred hhcCCEeEEccEEEEc-cCCeEEEEEECCChH------------HHHHHH-HHHHHhCCEEEEEE-ECCCCCcHHHH-HH
Confidence 1122333333333322 244678999999932 333444 44567899877754 56555544433 24
Q ss_pred HHHhCCCCCc-eEEEeccCcccCcc
Q 006928 196 AREVDPTGER-TFGVLTKLDLMDKG 219 (625)
Q Consensus 196 ~~~~d~~~~r-ti~VltK~D~~~~~ 219 (625)
+..+...+.+ .|+|+||+|+++..
T Consensus 120 ~~~~~~~g~~~iIvvvNK~D~~~~~ 144 (409)
T CHL00071 120 ILLAKQVGVPNIVVFLNKEDQVDDE 144 (409)
T ss_pred HHHHHHcCCCEEEEEEEccCCCCHH
Confidence 4555556777 67899999998643
No 205
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.8e-08 Score=95.27 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=95.2
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
..+-.|++||+.++|||+++..+....|- |-+...+
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~-------~~~~sTi------------------------------------- 45 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFN-------TSFISTI------------------------------------- 45 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCc-------CCccceE-------------------------------------
Confidence 45778999999999999999999988761 1111111
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc-H
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT-S 190 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~-~ 190 (625)
++....-.+++.+ ....|.+|||.| ++..+.++.+|++.++.++|+++-.+. .+.+ .
T Consensus 46 -------GIDFk~kti~l~g-~~i~lQiWDtaG-------------Qerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~ 104 (207)
T KOG0078|consen 46 -------GIDFKIKTIELDG-KKIKLQIWDTAG-------------QERFRTITTAYYRGAMGILLVYDITNEKSFENIR 104 (207)
T ss_pred -------EEEEEEEEEEeCC-eEEEEEEEEccc-------------chhHHHHHHHHHhhcCeeEEEEEccchHHHHHHH
Confidence 1111111111212 234689999999 567799999999999998887654432 2222 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINK 250 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (625)
.|++.+++..+.+.+.++|-||+|+.++..--.+.-+.-...++..|+.+.+.+..++.+
T Consensus 105 ~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 105 NWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred HHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 355566666677889999999999987543111111100223455566666655544433
No 206
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.83 E-value=1.8e-08 Score=105.26 Aligned_cols=100 Identities=19% Similarity=0.296 Sum_probs=61.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
++|++||.||+|||||+|+|+|.+........||+-|..-.+.-. +.. + +.+.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~-------------d~r---~-----------~~l~ 55 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVP-------------DPR---L-----------DKLA 55 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEec-------------ccc---c-----------hhhH
Confidence 589999999999999999999988433344568888843322111 000 0 0000
Q ss_pred CCCCccccccEEEEEecCC---CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEe
Q 006928 116 GKSKQISNIPIQLSIYSPN---VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAIS 181 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~---~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~ 181 (625)
. ++.|. ...+.|+|+||++..... .+.+.+-..+.++++|+++++|.
T Consensus 56 ~-------------~~~p~~~~~a~i~lvD~pGL~~~a~~------g~glg~~fL~~i~~aD~li~VVd 105 (364)
T PRK09601 56 E-------------IVKPKKIVPATIEFVDIAGLVKGASK------GEGLGNQFLANIREVDAIVHVVR 105 (364)
T ss_pred H-------------hcCCccccCceEEEEECCCCCCCCCh------HHHHHHHHHHHHHhCCEEEEEEe
Confidence 0 11111 135899999999975433 23334455667889998777554
No 207
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.83 E-value=2.5e-08 Score=111.85 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=43.9
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
+.++|+||||.. .+..+...++..+|++||++ +++.++..+. ...+..+...+.|+++|+||+|+
T Consensus 71 ~~i~~iDTPG~e-------------~f~~~~~~~~~~aD~~IlVv-Da~~g~~~qt-~e~i~~~~~~~vpiIvviNK~D~ 135 (586)
T PRK04004 71 PGLLFIDTPGHE-------------AFTNLRKRGGALADIAILVV-DINEGFQPQT-IEAINILKRRKTPFVVAANKIDR 135 (586)
T ss_pred CCEEEEECCChH-------------HHHHHHHHhHhhCCEEEEEE-ECCCCCCHhH-HHHHHHHHHcCCCEEEEEECcCC
Confidence 458999999943 23445566778899877755 5554433332 22333344457899999999998
Q ss_pred cC
Q 006928 216 MD 217 (625)
Q Consensus 216 ~~ 217 (625)
.+
T Consensus 136 ~~ 137 (586)
T PRK04004 136 IP 137 (586)
T ss_pred ch
Confidence 63
No 208
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.82 E-value=3e-08 Score=97.86 Aligned_cols=114 Identities=18% Similarity=0.267 Sum_probs=69.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+|||+.++|||||++++++..| |... .|+...
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y-----~pTi~~---------------------------------------- 36 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSY-----VPTVFE---------------------------------------- 36 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCcc-----CCcccc----------------------------------------
Confidence 689999999999999999998875 4322 121000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH----H
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD----A 192 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~----~ 192 (625)
.+ ...+.+. .....|.||||||- +....+...|+.++|++|+++...+. -+-.. +
T Consensus 37 ---~~---~~~~~~~-~~~v~L~iwDt~G~-------------e~~~~l~~~~~~~~d~illvfdis~~-~Sf~~i~~~w 95 (222)
T cd04173 37 ---NY---TASFEID-KRRIELNMWDTSGS-------------SYYDNVRPLAYPDSDAVLICFDISRP-ETLDSVLKKW 95 (222)
T ss_pred ---ce---EEEEEEC-CEEEEEEEEeCCCc-------------HHHHHHhHHhccCCCEEEEEEECCCH-HHHHHHHHHH
Confidence 00 0111121 12356899999993 22345566788999988876654432 11111 2
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
....+...+ +.|+|+|.||+|+.+.
T Consensus 96 ~~~~~~~~~-~~piiLVgnK~DL~~~ 120 (222)
T cd04173 96 QGETQEFCP-NAKVVLVGCKLDMRTD 120 (222)
T ss_pred HHHHHhhCC-CCCEEEEEECcccccc
Confidence 222333333 5899999999999753
No 209
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.82 E-value=2.3e-08 Score=95.56 Aligned_cols=114 Identities=18% Similarity=0.280 Sum_probs=70.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+++|+.++|||||++++.+..| |... .|+...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~---------------------------------------- 36 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETY-----VPTVFE---------------------------------------- 36 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCc-----CCceEE----------------------------------------
Confidence 699999999999999999998875 4321 221110
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc--HHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT--SDAI 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~--~~~l 193 (625)
.++ ..+.+.+ ....+.|+||||-. ....+...|++++|++|++.+-.+. .+.. ..+.
T Consensus 37 ---~~~---~~~~~~~-~~~~l~iwDt~G~~-------------~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~ 96 (178)
T cd04131 37 ---NYT---ASFEIDE-QRIELSLWDTSGSP-------------YYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWR 96 (178)
T ss_pred ---EEE---EEEEECC-EEEEEEEEECCCch-------------hhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHH
Confidence 000 0111211 23568999999932 2244556788999988776654332 1221 2333
Q ss_pred HHHHHhCCCCCceEEEeccCcccC
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~ 217 (625)
..+++..+ ..+.++|.||+|+.+
T Consensus 97 ~~i~~~~~-~~~iilVgnK~DL~~ 119 (178)
T cd04131 97 GEIQEFCP-NTKVLLVGCKTDLRT 119 (178)
T ss_pred HHHHHHCC-CCCEEEEEEChhhhc
Confidence 34445444 578999999999864
No 210
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.81 E-value=7.8e-09 Score=103.38 Aligned_cols=92 Identities=26% Similarity=0.342 Sum_probs=63.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
--++++||.||+||||||++|+|.+--+.+...+|..| +
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~-----------------------------------------V 101 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEP-----------------------------------------V 101 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceeccc-----------------------------------------c
Confidence 34999999999999999999999874333333444433 2
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI 187 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~ 187 (625)
.| +...+...+.++|+||++..+..+... -..+.+.++++|.||+ |.++..+.
T Consensus 102 PG-------------~l~Y~ga~IQild~Pgii~gas~g~gr------G~~vlsv~R~ADlIii-Vld~~~~~ 154 (365)
T COG1163 102 PG-------------MLEYKGAQIQLLDLPGIIEGASSGRGR------GRQVLSVARNADLIII-VLDVFEDP 154 (365)
T ss_pred cc-------------eEeecCceEEEEcCcccccCcccCCCC------cceeeeeeccCCEEEE-EEecCCCh
Confidence 23 333345789999999999887664221 1335677889998776 45555444
No 211
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.80 E-value=1.5e-08 Score=102.22 Aligned_cols=125 Identities=24% Similarity=0.301 Sum_probs=76.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
-|.+||-|||||||||++++..+-=-.+.-.+|-.| .| |
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~P---nL--------------------------------------G 199 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVP---NL--------------------------------------G 199 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccC---cc--------------------------------------c
Confidence 477899999999999999998763222233455555 11 2
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc--ccHHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI--ATSDAIK 194 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~--~~~~~l~ 194 (625)
.+.+ .....+++-|.||++..+..+-. + -.-..+.|+++..++.+++-+..+- ..++...
T Consensus 200 ----------vV~~--~~~~sfv~ADIPGLIEGAs~G~G--L----G~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~ 261 (369)
T COG0536 200 ----------VVRV--DGGESFVVADIPGLIEGASEGVG--L----GLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQT 261 (369)
T ss_pred ----------EEEe--cCCCcEEEecCcccccccccCCC--c----cHHHHHHHHhhheeEEEEecCcccCCCHHHHHHH
Confidence 1122 34467999999999998866422 1 1223456678887776665443332 1122222
Q ss_pred HHHHh---CC--CCCceEEEeccCcccCccc
Q 006928 195 LAREV---DP--TGERTFGVLTKLDLMDKGT 220 (625)
Q Consensus 195 l~~~~---d~--~~~rti~VltK~D~~~~~~ 220 (625)
+..++ .+ ..++.++|+||+|+....+
T Consensus 262 i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e 292 (369)
T COG0536 262 IRNELEKYSPKLAEKPRIVVLNKIDLPLDEE 292 (369)
T ss_pred HHHHHHHhhHHhccCceEEEEeccCCCcCHH
Confidence 33332 22 3688999999999665543
No 212
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.79 E-value=4e-08 Score=110.67 Aligned_cols=134 Identities=18% Similarity=0.274 Sum_probs=76.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..-.|++||+.++|||||+++|+... |..++.-. +..+.|.... ++
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~t------g~i~~~~~--------------------~~~~lD~~~~--------Er 51 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELT------GTLSEREM--------------------KAQVLDSMDL--------ER 51 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhc------CCCccccc--------------------ccccccCchH--------Hh
Confidence 34579999999999999999998642 22221110 0001111110 01
Q ss_pred hhCCCCccccccEEEEEec--CCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006928 114 ITGKSKQISNIPIQLSIYS--PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~--~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~ 191 (625)
. .+..+....+.+.... .....++||||||..+ +...+.++++.+|++||+| +++.+...+.
T Consensus 52 e--rGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d-------------F~~~v~~sl~~aD~aILVV-Das~gv~~qt 115 (600)
T PRK05433 52 E--RGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD-------------FSYEVSRSLAACEGALLVV-DASQGVEAQT 115 (600)
T ss_pred h--cCCcccccEEEEEEEccCCCcEEEEEEECCCcHH-------------HHHHHHHHHHHCCEEEEEE-ECCCCCCHHH
Confidence 1 1223333444444332 1235689999999643 2445678889999877755 5554444333
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
...+ ..+...+.+.|+|+||+|+...
T Consensus 116 ~~~~-~~~~~~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 116 LANV-YLALENDLEIIPVLNKIDLPAA 141 (600)
T ss_pred HHHH-HHHHHCCCCEEEEEECCCCCcc
Confidence 2212 2222347899999999998643
No 213
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.79 E-value=6.2e-08 Score=95.52 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=80.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccccccc--ccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
-+|+|+|+.|||||||+++|.+..+ +.+.. +.+..|....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~------------------------------------- 47 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTI------------------------------------- 47 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEE-------------------------------------
Confidence 4799999999999999999999875 33222 1222221111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC---ccccH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ---DIATS 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~---d~~~~ 190 (625)
........+.++||+| .+.++.+...|...++.+++++..... +....
T Consensus 48 ----------------~~~~~~~~~~~~Dt~g-------------q~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~ 98 (219)
T COG1100 48 ----------------EPYRRNIKLQLWDTAG-------------QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTE 98 (219)
T ss_pred ----------------EeCCCEEEEEeecCCC-------------HHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHH
Confidence 0011134589999999 445577888999999998887765542 12223
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCcccc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGTN 221 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~ 221 (625)
.+...++...+...+.+.|.||+|+......
T Consensus 99 ~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~ 129 (219)
T COG1100 99 EWLEELRELAPDDVPILLVGNKIDLFDEQSS 129 (219)
T ss_pred HHHHHHHHhCCCCceEEEEecccccccchhH
Confidence 3444555555567899999999999877543
No 214
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.78 E-value=2.2e-08 Score=93.61 Aligned_cols=144 Identities=19% Similarity=0.292 Sum_probs=85.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+|+|+.++|||||++++.+..| |.... .|-.. ...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~-~t~~~-~~~---------------------------------------- 37 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYI-PTIGI-DSY---------------------------------------- 37 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSE-TTSSE-EEE----------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccc-ccccc-ccc----------------------------------------
Confidence 489999999999999999999875 42221 11100 000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAI 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~---~~~l 193 (625)
...+.+. .....+.|+|+||-.. ...+...+++++|++|++... +..-+- ..++
T Consensus 38 --------~~~~~~~-~~~~~l~i~D~~g~~~-------------~~~~~~~~~~~~~~~ii~fd~-~~~~S~~~~~~~~ 94 (162)
T PF00071_consen 38 --------SKEVSID-GKPVNLEIWDTSGQER-------------FDSLRDIFYRNSDAIIIVFDV-TDEESFENLKKWL 94 (162)
T ss_dssp --------EEEEEET-TEEEEEEEEEETTSGG-------------GHHHHHHHHTTESEEEEEEET-TBHHHHHTHHHHH
T ss_pred --------ccccccc-cccccccccccccccc-------------ccccccccccccccccccccc-ccccccccccccc
Confidence 0011111 1224689999999432 144556788999988876643 321111 2344
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccc-c---HHHHHhCcccccCCCeEEEEeCChhhhhc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKGT-N---ALEVLEGRSYRLQHPWVGIVNRSQADINK 250 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~-~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (625)
.......+...+.++|.||.|+.+... . ..++. ...+.+|+.+......++.+
T Consensus 95 ~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~ 151 (162)
T PF00071_consen 95 EEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFA----KELGVPYFEVSAKNGENVKE 151 (162)
T ss_dssp HHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHH----HHTTSEEEEEBTTTTTTHHH
T ss_pred ccccccccccccceeeeccccccccccchhhHHHHHH----HHhCCEEEEEECCCCCCHHH
Confidence 455555665689999999999987332 1 12222 23447777777665555443
No 215
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.77 E-value=4.9e-08 Score=106.32 Aligned_cols=80 Identities=18% Similarity=0.298 Sum_probs=46.9
Q ss_pred ccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC--ccccH--HHHHH
Q 006928 120 QISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ--DIATS--DAIKL 195 (625)
Q Consensus 120 ~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~--d~~~~--~~l~l 195 (625)
+++-+.....+.. +...++||||||..+ .+..+ ...+..+|++|+++ +++. ++..+ ..+.+
T Consensus 69 G~T~d~~~~~~~~-~~~~i~liDtpG~~~------------~~~~~-~~~~~~aD~~ilVv-Da~~~~~~~~~~~~~~~~ 133 (425)
T PRK12317 69 GVTIDLAHKKFET-DKYYFTIVDCPGHRD------------FVKNM-ITGASQADAAVLVV-AADDAGGVMPQTREHVFL 133 (425)
T ss_pred CccceeeeEEEec-CCeEEEEEECCCccc------------chhhH-hhchhcCCEEEEEE-EcccCCCCCcchHHHHHH
Confidence 4454544444443 346899999999421 11222 34467899877755 4554 33332 23334
Q ss_pred HHHhCCCCC-ceEEEeccCcccC
Q 006928 196 AREVDPTGE-RTFGVLTKLDLMD 217 (625)
Q Consensus 196 ~~~~d~~~~-rti~VltK~D~~~ 217 (625)
++. .+. +.++|+||+|+.+
T Consensus 134 ~~~---~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 134 ART---LGINQLIVAINKMDAVN 153 (425)
T ss_pred HHH---cCCCeEEEEEEcccccc
Confidence 433 343 6889999999976
No 216
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=1.2e-08 Score=94.59 Aligned_cols=155 Identities=15% Similarity=0.200 Sum_probs=90.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|+++|+.|+|||||+.+.+-.+| +.....+....
T Consensus 7 KvvLLG~~~VGKSSlV~Rfvk~~F-~e~~e~TIGaa-------------------------------------------- 41 (200)
T KOG0092|consen 7 KVVLLGDSGVGKSSLVLRFVKDQF-HENIEPTIGAA-------------------------------------------- 41 (200)
T ss_pred EEEEECCCCCCchhhhhhhhhCcc-ccccccccccE--------------------------------------------
Confidence 689999999999999999998887 22111111111
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~ 196 (625)
|-...+ .+ ......+.||||.|-- ....++.-|.+++++.|++. +.+..-+-..+..+.
T Consensus 42 ----F~tktv--~~-~~~~ikfeIWDTAGQE-------------Ry~slapMYyRgA~AAivvY-Dit~~~SF~~aK~Wv 100 (200)
T KOG0092|consen 42 ----FLTKTV--TV-DDNTIKFEIWDTAGQE-------------RYHSLAPMYYRGANAAIVVY-DITDEESFEKAKNWV 100 (200)
T ss_pred ----EEEEEE--Ee-CCcEEEEEEEEcCCcc-------------cccccccceecCCcEEEEEE-ecccHHHHHHHHHHH
Confidence 111111 11 1123457899999933 34667788999999877754 444323333444455
Q ss_pred HHhCCCCCc---eEEEeccCcccCccc-cHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 006928 197 REVDPTGER---TFGVLTKLDLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (625)
Q Consensus 197 ~~~d~~~~r---ti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (625)
+++.....| +-+|-||+|+.+... .+.+.-.. ...-++-|+.+....+.+++.....+...
T Consensus 101 keL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~y-Ae~~gll~~ETSAKTg~Nv~~if~~Ia~~ 165 (200)
T KOG0092|consen 101 KELQRQASPNIVIALVGNKADLLERREVEFEEAQAY-AESQGLLFFETSAKTGENVNEIFQAIAEK 165 (200)
T ss_pred HHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHH-HHhcCCEEEEEecccccCHHHHHHHHHHh
Confidence 555433333 345889999998543 22221110 12356778888877776665544444333
No 217
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.75 E-value=2.4e-08 Score=95.06 Aligned_cols=115 Identities=20% Similarity=0.269 Sum_probs=72.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.--+|+++|.++|||||+++.|.+..+ .+-.| |
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~-------~~~~p-------T--------------------------------- 45 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEI-------SETIP-------T--------------------------------- 45 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSE-------EEEEE-------E---------------------------------
T ss_pred cEEEEEEECCCccchHHHHHHhhhccc-------cccCc-------c---------------------------------
Confidence 345899999999999999999997654 11122 1
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
.++.-. . +.. +...++++|++|-.. ++.+...|++++|.+|++|++++.+ .-.++.
T Consensus 46 -----~g~~~~--~--i~~-~~~~~~~~d~gG~~~-------------~~~~w~~y~~~~~~iIfVvDssd~~-~l~e~~ 101 (175)
T PF00025_consen 46 -----IGFNIE--E--IKY-KGYSLTIWDLGGQES-------------FRPLWKSYFQNADGIIFVVDSSDPE-RLQEAK 101 (175)
T ss_dssp -----SSEEEE--E--EEE-TTEEEEEEEESSSGG-------------GGGGGGGGHTTESEEEEEEETTGGG-GHHHHH
T ss_pred -----cccccc--e--eee-CcEEEEEEecccccc-------------ccccceeeccccceeEEEEecccce-eecccc
Confidence 001111 1 111 235689999999332 2456778999999988877666432 223333
Q ss_pred HHHHH-hC---CCCCceEEEeccCcccCcc
Q 006928 194 KLARE-VD---PTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 194 ~l~~~-~d---~~~~rti~VltK~D~~~~~ 219 (625)
+.+.. +. -.+.|.++++||.|+.+..
T Consensus 102 ~~L~~ll~~~~~~~~piLIl~NK~D~~~~~ 131 (175)
T PF00025_consen 102 EELKELLNDPELKDIPILILANKQDLPDAM 131 (175)
T ss_dssp HHHHHHHTSGGGTTSEEEEEEESTTSTTSS
T ss_pred cchhhhcchhhcccceEEEEeccccccCcc
Confidence 22222 22 2468999999999987643
No 218
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.74 E-value=3.1e-08 Score=101.11 Aligned_cols=139 Identities=22% Similarity=0.347 Sum_probs=76.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|.|||..|+||||++|+|.+..+.+......+... ...
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~-----------------------------------------~~~ 44 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSA-----------------------------------------SIS 44 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S-----------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccccccccccc-----------------------------------------ccc
Confidence 689999999999999999999887554311110000 000
Q ss_pred CCCccccccEEEEEecC-CCCCcEEEeCCCCcccCCCC-CCccHHHHHHHHHHHhhc-------------CCCEEEEEEe
Q 006928 117 KSKQISNIPIQLSIYSP-NVVNLTLIDLPGLTKVAVEG-QPESIVEDIENMVRSYVE-------------KPSCIILAIS 181 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~-~~~~ltlvDlPGi~~~~~~~-q~~~~~~~i~~~v~~yi~-------------~~~~iIl~v~ 181 (625)
....+..... .+... -..+|+||||||+...-... ..+.+...+.+....|+. +.||++.++.
T Consensus 45 ~~~~i~~~~~--~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~ 122 (281)
T PF00735_consen 45 RTLEIEERTV--ELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIP 122 (281)
T ss_dssp SCEEEEEEEE--EEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-
T ss_pred cccceeeEEE--EeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEc
Confidence 0001111111 11111 12479999999997643321 112344445555555552 3467777666
Q ss_pred cCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccc
Q 006928 182 PANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGT 220 (625)
Q Consensus 182 ~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 220 (625)
|....+...|.. ..+++.. ..++|-||.|.|.+...+
T Consensus 123 pt~~~L~~~Di~-~mk~Ls~-~vNvIPvIaKaD~lt~~e 159 (281)
T PF00735_consen 123 PTGHGLKPLDIE-FMKRLSK-RVNVIPVIAKADTLTPEE 159 (281)
T ss_dssp TTSSSS-HHHHH-HHHHHTT-TSEEEEEESTGGGS-HHH
T ss_pred CCCccchHHHHH-HHHHhcc-cccEEeEEecccccCHHH
Confidence 666667766664 7777876 488999999999997643
No 219
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.74 E-value=2.6e-08 Score=104.40 Aligned_cols=134 Identities=21% Similarity=0.188 Sum_probs=84.0
Q ss_pred CCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHH
Q 006928 27 EGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKE 106 (625)
Q Consensus 27 ~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (625)
++|+...+-++++|||-||+||||++|-++..+. .+| .+|. +|
T Consensus 160 rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-----evq-pYaF-----TT-------------------------- 202 (620)
T KOG1490|consen 160 RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-----EVQ-PYAF-----TT-------------------------- 202 (620)
T ss_pred cCCCCCCCcCeEEEecCCCCCcHhhccccccccc-----ccC-Cccc-----cc--------------------------
Confidence 6677667889999999999999999998887764 211 1110 00
Q ss_pred HHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc
Q 006928 107 ISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD 186 (625)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d 186 (625)
.....| -.......+.++|||||.+.+.. ....|+-.....+.+-.+.+|++.+-+.-
T Consensus 203 ----ksL~vG-------------H~dykYlrwQViDTPGILD~plE-----drN~IEmqsITALAHLraaVLYfmDLSe~ 260 (620)
T KOG1490|consen 203 ----KLLLVG-------------HLDYKYLRWQVIDTPGILDRPEE-----DRNIIEMQIITALAHLRSAVLYFMDLSEM 260 (620)
T ss_pred ----chhhhh-------------hhhhheeeeeecCCccccCcchh-----hhhHHHHHHHHHHHHhhhhheeeeechhh
Confidence 001112 12223356899999999976544 23333333334455555567777765543
Q ss_pred cccH--HHHHHHHHhCC--CCCceEEEeccCcccCcc
Q 006928 187 IATS--DAIKLAREVDP--TGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 187 ~~~~--~~l~l~~~~d~--~~~rti~VltK~D~~~~~ 219 (625)
...+ +=.++...+.| ..+++|+|+||+|.+...
T Consensus 261 CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 261 CGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE 297 (620)
T ss_pred hCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc
Confidence 3332 33345566666 368899999999998764
No 220
>PLN03127 Elongation factor Tu; Provisional
Probab=98.73 E-value=4.6e-08 Score=106.44 Aligned_cols=131 Identities=17% Similarity=0.213 Sum_probs=75.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
-..|+++|..++|||||+++|+|.. -..|.. +.. . |.. .|. ..
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~-~~~g~~---~~~---~---------~~~---------~D~--~~---------- 103 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVL-AEEGKA---KAV---A---------FDE---------IDK--AP---------- 103 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHH-HHhhcc---cce---e---------ecc---------ccC--Ch----------
Confidence 3469999999999999999998642 111110 000 0 000 000 00
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
.....+++-+.....+.. +..+++||||||.. +.+.+++. -+..+|+++|+ ++++..+..++ .+
T Consensus 104 ~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~------------~f~~~~~~-g~~~aD~allV-Vda~~g~~~qt-~e 167 (447)
T PLN03127 104 EEKARGITIATAHVEYET-AKRHYAHVDCPGHA------------DYVKNMIT-GAAQMDGGILV-VSAPDGPMPQT-KE 167 (447)
T ss_pred hHhhcCceeeeeEEEEcC-CCeEEEEEECCCcc------------chHHHHHH-HHhhCCEEEEE-EECCCCCchhH-HH
Confidence 011234555555555444 34689999999953 23344444 33469987774 55665554443 33
Q ss_pred HHHHhCCCCCce-EEEeccCcccCc
Q 006928 195 LAREVDPTGERT-FGVLTKLDLMDK 218 (625)
Q Consensus 195 l~~~~d~~~~rt-i~VltK~D~~~~ 218 (625)
.+..+...+.+. |+|+||+|+++.
T Consensus 168 ~l~~~~~~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 168 HILLARQVGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred HHHHHHHcCCCeEEEEEEeeccCCH
Confidence 555555567884 788999999863
No 221
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.73 E-value=6.2e-08 Score=111.66 Aligned_cols=134 Identities=11% Similarity=0.189 Sum_probs=79.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
++..|+|+|..++|||||+|+|++.. +...+ + ....+ +....|+... .+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~------g~~~~-~-----~~~~~-----------g~~~~D~~~~--------e~ 57 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYT------GRIHK-I-----GEVHD-----------GAATMDWMEQ--------EK 57 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhC------CCccc-c-----ccccC-----------CccccCCCHH--------HH
Confidence 56789999999999999999998643 11111 1 01100 0111111111 11
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
..+++-+.....+... ...++||||||..+. ...+..+++.+|++|+++ ++..+...++.
T Consensus 58 ----~rgiti~~~~~~~~~~-~~~i~liDTPG~~~~-------------~~~~~~~l~~~D~~ilVv-da~~g~~~~~~- 117 (689)
T TIGR00484 58 ----ERGITITSAATTVFWK-GHRINIIDTPGHVDF-------------TVEVERSLRVLDGAVAVL-DAVGGVQPQSE- 117 (689)
T ss_pred ----hcCCCEecceEEEEEC-CeEEEEEECCCCcch-------------hHHHHHHHHHhCEEEEEE-eCCCCCChhHH-
Confidence 1223333333333333 468999999997542 223678888999877755 55554444432
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+.+.+...+.|.++|+||+|+...
T Consensus 118 ~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 118 TVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCC
Confidence 3555566668999999999999854
No 222
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=4.8e-08 Score=86.23 Aligned_cols=120 Identities=18% Similarity=0.339 Sum_probs=86.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
|-.||+||..++||+.|+...+.. +||-|.|.+-..--.+.
T Consensus 7 lfkivlvgnagvgktclvrrftqg-lfppgqgatigvdfmik-------------------------------------- 47 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIK-------------------------------------- 47 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEEE--------------------------------------
Confidence 567999999999999999999977 56877764332221111
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEe-cCCCcccc-HHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAIS-PANQDIAT-SDA 192 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~-~a~~d~~~-~~~ 192 (625)
.+++.+ +...|.||||.| .+.++.++.+|.+.++++||+.+ ++...+.. .+|
T Consensus 48 ------------tvev~g-ekiklqiwdtag-------------qerfrsitqsyyrsahalilvydiscqpsfdclpew 101 (213)
T KOG0095|consen 48 ------------TVEVNG-EKIKLQIWDTAG-------------QERFRSITQSYYRSAHALILVYDISCQPSFDCLPEW 101 (213)
T ss_pred ------------EEEECC-eEEEEEEeeccc-------------hHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHH
Confidence 112222 235689999999 67789999999999999998754 33333332 467
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+.-+.++.....-.|.|-||+|+.+..
T Consensus 102 lreie~yan~kvlkilvgnk~d~~drr 128 (213)
T KOG0095|consen 102 LREIEQYANNKVLKILVGNKIDLADRR 128 (213)
T ss_pred HHHHHHHhhcceEEEeeccccchhhhh
Confidence 766666766677789999999998764
No 223
>PRK12736 elongation factor Tu; Reviewed
Probab=98.71 E-value=4.9e-08 Score=105.06 Aligned_cols=130 Identities=18% Similarity=0.243 Sum_probs=71.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
-.|+++|..++|||||+++|+|..- ..|.+-. ..|. ..|. ... +
T Consensus 13 ~ni~i~Ghvd~GKSTL~~~L~~~~~-~~g~~~~---------------~~~~---------~~d~--~~~------E--- 56 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKVLA-ERGLNQA---------------KDYD---------SIDA--APE------E--- 56 (394)
T ss_pred eEEEEEccCCCcHHHHHHHHHhhhh-hhccccc---------------cchh---------hhcC--CHH------H---
Confidence 3699999999999999999997521 1110000 0000 0000 000 0
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
...+++-+........ +...++||||||. .+.+..+. .-+..+|+++++ +++..++..+. .+.
T Consensus 57 -~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh------------~~f~~~~~-~~~~~~d~~llV-vd~~~g~~~~t-~~~ 119 (394)
T PRK12736 57 -KERGITINTAHVEYET-EKRHYAHVDCPGH------------ADYVKNMI-TGAAQMDGAILV-VAATDGPMPQT-REH 119 (394)
T ss_pred -HhcCccEEEEeeEecC-CCcEEEEEECCCH------------HHHHHHHH-HHHhhCCEEEEE-EECCCCCchhH-HHH
Confidence 1123343433333322 4467899999992 23344443 334678987775 45655544333 224
Q ss_pred HHHhCCCCCc-eEEEeccCcccCc
Q 006928 196 AREVDPTGER-TFGVLTKLDLMDK 218 (625)
Q Consensus 196 ~~~~d~~~~r-ti~VltK~D~~~~ 218 (625)
+..+...|.+ .|+|+||+|+.+.
T Consensus 120 ~~~~~~~g~~~~IvviNK~D~~~~ 143 (394)
T PRK12736 120 ILLARQVGVPYLVVFLNKVDLVDD 143 (394)
T ss_pred HHHHHHcCCCEEEEEEEecCCcch
Confidence 4444445777 5788999999753
No 224
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.71 E-value=5.3e-08 Score=105.14 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=50.5
Q ss_pred ccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH--HHHHHHH
Q 006928 120 QISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAR 197 (625)
Q Consensus 120 ~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--~~l~l~~ 197 (625)
++|-+.....+.. +...++||||||. .+.+..+. .-+..+|+++|+| ++..++..+ +.+.+++
T Consensus 65 giTid~~~~~~~~-~~~~~~liDtPGh------------~~f~~~~~-~~~~~aD~allVV-da~~G~~~qt~~~~~~~~ 129 (406)
T TIGR02034 65 GITIDVAYRYFST-DKRKFIVADTPGH------------EQYTRNMA-TGASTADLAVLLV-DARKGVLEQTRRHSYIAS 129 (406)
T ss_pred CcCeEeeeEEEcc-CCeEEEEEeCCCH------------HHHHHHHH-HHHhhCCEEEEEE-ECCCCCccccHHHHHHHH
Confidence 4554444444434 3458999999993 23334443 3567899877755 565555433 3344555
Q ss_pred HhCCCCCceEEEeccCcccCcc
Q 006928 198 EVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 198 ~~d~~~~rti~VltK~D~~~~~ 219 (625)
.+. ..+.|+|+||+|+.+..
T Consensus 130 ~~~--~~~iivviNK~D~~~~~ 149 (406)
T TIGR02034 130 LLG--IRHVVLAVNKMDLVDYD 149 (406)
T ss_pred HcC--CCcEEEEEEecccccch
Confidence 443 24578899999998643
No 225
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.70 E-value=5.6e-08 Score=95.28 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=81.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+.|++++.|..|+|||||||.++.... -+..+ ...|-..+
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~-~~~t~--k~K~g~Tq------------------------------------- 174 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKN-IADTS--KSKNGKTQ------------------------------------- 174 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhh-hhhhc--CCCCccce-------------------------------------
Confidence 568999999999999999999998753 11111 11110000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEE--EEEEecCCCccccHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCI--ILAISPANQDIATSD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~i--Il~v~~a~~d~~~~~ 191 (625)
.+. +..-...+.+||+||+.....+ .+..+.+.++++.|+-+-+.+ +++.+++...+..-|
T Consensus 175 ------~in--------~f~v~~~~~~vDlPG~~~a~y~---~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D 237 (320)
T KOG2486|consen 175 ------AIN--------HFHVGKSWYEVDLPGYGRAGYG---FELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTD 237 (320)
T ss_pred ------eee--------eeeccceEEEEecCCcccccCC---ccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCC
Confidence 000 0111257899999997665443 223445578888888543221 233456666676666
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.. .+..+...+.|...|+||||.....
T Consensus 238 ~~-~i~~~ge~~VP~t~vfTK~DK~k~~ 264 (320)
T KOG2486|consen 238 NP-EIAWLGENNVPMTSVFTKCDKQKKV 264 (320)
T ss_pred hH-HHHHHhhcCCCeEEeeehhhhhhhc
Confidence 55 5566777899999999999987653
No 226
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.70 E-value=5.8e-08 Score=104.89 Aligned_cols=67 Identities=21% Similarity=0.232 Sum_probs=41.0
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc-c--cHHHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI-A--TSDAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~-~--~~~~l~l~~~~d~~~~rti~VltK 212 (625)
..++|+||||- .+.+.. ...++..+|+++|+| +++... . +.+.+.++.... ..+.++|+||
T Consensus 80 ~~i~liDtPGh------------~~f~~~-~~~g~~~aD~aIlVV-Da~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK 143 (406)
T TIGR03680 80 RRVSFVDAPGH------------ETLMAT-MLSGAALMDGALLVI-AANEPCPQPQTKEHLMALEIIG--IKNIVIVQNK 143 (406)
T ss_pred cEEEEEECCCH------------HHHHHH-HHHHHHHCCEEEEEE-ECCCCccccchHHHHHHHHHcC--CCeEEEEEEc
Confidence 56899999993 222233 455567889877755 555433 2 223333333222 2468999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+.+.
T Consensus 144 ~Dl~~~ 149 (406)
T TIGR03680 144 IDLVSK 149 (406)
T ss_pred cccCCH
Confidence 999864
No 227
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.70 E-value=1e-07 Score=94.22 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=47.8
Q ss_pred CccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC------ccc--cH
Q 006928 119 KQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ------DIA--TS 190 (625)
Q Consensus 119 ~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~------d~~--~~ 190 (625)
.+++.+.....+.. ....++||||||... . ...+..++..+|++|++|..... +.. ..
T Consensus 61 rg~T~d~~~~~~~~-~~~~i~liDtpG~~~------------~-~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~ 126 (219)
T cd01883 61 RGVTIDVGLAKFET-EKYRFTILDAPGHRD------------F-VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR 126 (219)
T ss_pred CccCeecceEEEee-CCeEEEEEECCChHH------------H-HHHHHHHhhhCCEEEEEEECCCCccccccccccchH
Confidence 34555555544443 347899999999432 1 22334567789988776554432 121 11
Q ss_pred HHHHHHHHhCCCC-CceEEEeccCcccC
Q 006928 191 DAIKLAREVDPTG-ERTFGVLTKLDLMD 217 (625)
Q Consensus 191 ~~l~l~~~~d~~~-~rti~VltK~D~~~ 217 (625)
....++. ..+ .|.|+|+||+|+..
T Consensus 127 ~~~~~~~---~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 127 EHALLAR---TLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred HHHHHHH---HcCCCeEEEEEEcccccc
Confidence 2222333 233 57889999999984
No 228
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.69 E-value=4.1e-08 Score=84.56 Aligned_cols=102 Identities=24% Similarity=0.277 Sum_probs=66.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
+|++||..|+||+||.++|-|.+.+++....
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQA------------------------------------------------- 33 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQA------------------------------------------------- 33 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccce-------------------------------------------------
Confidence 6999999999999999999999876544211
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~ 196 (625)
+.. .+=-.|||||-+-. ...+.....-..+++|.|++ |.+++...+.-..
T Consensus 34 -------------ve~---~d~~~IDTPGEy~~---------~~~~Y~aL~tt~~dadvi~~-v~~and~~s~f~p---- 83 (148)
T COG4917 34 -------------VEF---NDKGDIDTPGEYFE---------HPRWYHALITTLQDADVIIY-VHAANDPESRFPP---- 83 (148)
T ss_pred -------------eec---cCccccCCchhhhh---------hhHHHHHHHHHhhccceeee-eecccCccccCCc----
Confidence 111 01136899996642 11222223334578887665 6677765443221
Q ss_pred HHhCCCCCceEEEeccCcccC
Q 006928 197 REVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 197 ~~~d~~~~rti~VltK~D~~~ 217 (625)
...++..+++|||+||.|+..
T Consensus 84 ~f~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 84 GFLDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred ccccccccceEEEEecccccc
Confidence 124555577999999999985
No 229
>PRK12735 elongation factor Tu; Reviewed
Probab=98.69 E-value=8.1e-08 Score=103.44 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=44.3
Q ss_pred CCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceE-EEecc
Q 006928 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTF-GVLTK 212 (625)
Q Consensus 134 ~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti-~VltK 212 (625)
+...++||||||. .+.+..+ ..-+..+|.++|++ ++......+.. +.+..+...+.+.+ +|+||
T Consensus 73 ~~~~i~~iDtPGh------------~~f~~~~-~~~~~~aD~~llVv-da~~g~~~qt~-e~l~~~~~~gi~~iivvvNK 137 (396)
T PRK12735 73 ANRHYAHVDCPGH------------ADYVKNM-ITGAAQMDGAILVV-SAADGPMPQTR-EHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred CCcEEEEEECCCH------------HHHHHHH-HhhhccCCEEEEEE-ECCCCCchhHH-HHHHHHHHcCCCeEEEEEEe
Confidence 4467899999994 2333444 34567899877755 55554444432 34444555677866 57999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+.+.
T Consensus 138 ~Dl~~~ 143 (396)
T PRK12735 138 CDMVDD 143 (396)
T ss_pred cCCcch
Confidence 999853
No 230
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.69 E-value=6.3e-08 Score=110.59 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=42.9
Q ss_pred CCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH--HHHHHHHHhCCCCCceEEEec
Q 006928 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGERTFGVLT 211 (625)
Q Consensus 134 ~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--~~l~l~~~~d~~~~rti~Vlt 211 (625)
+...++||||||.. +.+..+.. .+..+|+++|+ ++++..+..+ +.+.++..+. -.+.|+|+|
T Consensus 102 ~~~~~~liDtPG~~------------~f~~~~~~-~~~~aD~~llV-vda~~g~~~~t~e~~~~~~~~~--~~~iivvvN 165 (632)
T PRK05506 102 PKRKFIVADTPGHE------------QYTRNMVT-GASTADLAIIL-VDARKGVLTQTRRHSFIASLLG--IRHVVLAVN 165 (632)
T ss_pred CCceEEEEECCChH------------HHHHHHHH-HHHhCCEEEEE-EECCCCccccCHHHHHHHHHhC--CCeEEEEEE
Confidence 45689999999932 22344433 46789987775 4565544332 3344554442 146788999
Q ss_pred cCcccC
Q 006928 212 KLDLMD 217 (625)
Q Consensus 212 K~D~~~ 217 (625)
|+|+.+
T Consensus 166 K~D~~~ 171 (632)
T PRK05506 166 KMDLVD 171 (632)
T ss_pred eccccc
Confidence 999985
No 231
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.68 E-value=8.1e-08 Score=107.85 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=47.0
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
...++||||||..+ +...+..+++.+|+++|+|. +..+...+.. .+++.+...+.|.|+|+||+|
T Consensus 63 ~~kinlIDTPGh~D-------------F~~ev~~~l~~aD~alLVVD-a~~G~~~qT~-~~l~~a~~~~ip~IVviNKiD 127 (594)
T TIGR01394 63 GTKINIVDTPGHAD-------------FGGEVERVLGMVDGVLLLVD-ASEGPMPQTR-FVLKKALELGLKPIVVINKID 127 (594)
T ss_pred CEEEEEEECCCHHH-------------HHHHHHHHHHhCCEEEEEEe-CCCCCcHHHH-HHHHHHHHCCCCEEEEEECCC
Confidence 46799999999432 24456788899999887664 5444433322 233444446789999999999
Q ss_pred ccCc
Q 006928 215 LMDK 218 (625)
Q Consensus 215 ~~~~ 218 (625)
+...
T Consensus 128 ~~~a 131 (594)
T TIGR01394 128 RPSA 131 (594)
T ss_pred CCCc
Confidence 8653
No 232
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.68 E-value=7.8e-08 Score=103.61 Aligned_cols=130 Identities=16% Similarity=0.216 Sum_probs=72.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
-.|+++|..++|||||+++|++.- ...|.+ ..+. +. ..| ....
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~-~~~g~~---------~~~~------~~---------~~d--~~~~---------- 55 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVL-AKEGGA---------AARA------YD---------QID--NAPE---------- 55 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhH-HHhhcc---------cccc------cc---------ccc--CCHH----------
Confidence 369999999999999999999752 111111 0000 00 000 0000
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
....+++-+...+.+.. +...++||||||.. +.+..+ ...+..+|+++|++ ++......+. .+.
T Consensus 56 E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~------------~f~~~~-~~~~~~~D~~ilVv-da~~g~~~qt-~e~ 119 (394)
T TIGR00485 56 EKARGITINTAHVEYET-ENRHYAHVDCPGHA------------DYVKNM-ITGAAQMDGAILVV-SATDGPMPQT-REH 119 (394)
T ss_pred HHhcCcceeeEEEEEcC-CCEEEEEEECCchH------------HHHHHH-HHHHhhCCEEEEEE-ECCCCCcHHH-HHH
Confidence 01123444444444433 34578999999942 233334 33456789877754 5655443332 234
Q ss_pred HHHhCCCCCceE-EEeccCcccCc
Q 006928 196 AREVDPTGERTF-GVLTKLDLMDK 218 (625)
Q Consensus 196 ~~~~d~~~~rti-~VltK~D~~~~ 218 (625)
+..+...+.+.+ +|+||+|+++.
T Consensus 120 l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 120 ILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHcCCCEEEEEEEecccCCH
Confidence 444444577765 68999999864
No 233
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.68 E-value=1.3e-07 Score=104.81 Aligned_cols=138 Identities=14% Similarity=0.244 Sum_probs=78.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+.-.|+++|..+||||||+|+|+... |..++... +. .+.. ......|+.... .
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~------g~i~~~g~-v~--~~~~----------~~~~~~D~~~~E----~---- 61 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFG------GAIQEAGT-VK--GRKS----------GRHATSDWMEME----K---- 61 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC------CCccccce-ee--cccc----------CccccCCCcHHH----H----
Confidence 45589999999999999999997421 11122110 00 0000 000112222211 0
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
.++-+++...+.+. . +...++||||||..+ +...+..++..+|++|+++. +..+...+ ..
T Consensus 62 --~rgiSi~~~~~~~~--~-~~~~inliDTPG~~d-------------f~~~~~~~l~~aD~aIlVvD-a~~gv~~~-t~ 121 (526)
T PRK00741 62 --QRGISVTSSVMQFP--Y-RDCLINLLDTPGHED-------------FSEDTYRTLTAVDSALMVID-AAKGVEPQ-TR 121 (526)
T ss_pred --hhCCceeeeeEEEE--E-CCEEEEEEECCCchh-------------hHHHHHHHHHHCCEEEEEEe-cCCCCCHH-HH
Confidence 11122333333333 2 336799999999532 13446778889999887654 44444433 22
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+.+.....+.|+++++||+|+...
T Consensus 122 ~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 122 KLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred HHHHHHHhcCCCEEEEEECCccccc
Confidence 3445555568999999999998754
No 234
>PRK12739 elongation factor G; Reviewed
Probab=98.67 E-value=8.6e-08 Score=110.40 Aligned_cols=134 Identities=13% Similarity=0.179 Sum_probs=80.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
++..|+|||..++|||||+|+|+... +...+ . ....+ +..+.|+....
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~------g~~~~-~-----~~v~~-----------~~~~~D~~~~E--------- 54 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYT------GKSHK-I-----GEVHD-----------GAATMDWMEQE--------- 54 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhC------CCccc-c-----ccccC-----------CccccCCChhH---------
Confidence 46689999999999999999997532 10000 0 00000 01111211110
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
...+++-+.....+.. +...++||||||..+ +...+..++..+|++|++ +++..+...++.
T Consensus 55 ---~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~-------------f~~e~~~al~~~D~~ilV-vDa~~g~~~qt~- 115 (691)
T PRK12739 55 ---QERGITITSAATTCFW-KGHRINIIDTPGHVD-------------FTIEVERSLRVLDGAVAV-FDAVSGVEPQSE- 115 (691)
T ss_pred ---hhcCCCccceeEEEEE-CCEEEEEEcCCCHHH-------------HHHHHHHHHHHhCeEEEE-EeCCCCCCHHHH-
Confidence 1123343333333333 346899999999542 123477888899987775 456666655543
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+++.+...+.|.|+++||+|+...
T Consensus 116 ~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 116 TVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCC
Confidence 3666666678999999999999854
No 235
>PRK00007 elongation factor G; Reviewed
Probab=98.67 E-value=5.3e-08 Score=112.10 Aligned_cols=135 Identities=12% Similarity=0.160 Sum_probs=81.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+...|+++|..++|||||+|+|+... |...+ . ....+ +..+.|+....
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~------g~~~~-~-----g~v~~-----------~~~~~D~~~~E--------- 56 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYT------GVNHK-I-----GEVHD-----------GAATMDWMEQE--------- 56 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhc------CCccc-c-----ccccC-----------CcccCCCCHHH---------
Confidence 46689999999999999999997421 10000 0 00000 01112221111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
...+++-+.....+... ...++||||||..+ ... -+.+.+..+|+++++| ++..++..++.
T Consensus 57 ---~~rg~ti~~~~~~~~~~-~~~~~liDTPG~~~------------f~~-ev~~al~~~D~~vlVv-da~~g~~~qt~- 117 (693)
T PRK00007 57 ---QERGITITSAATTCFWK-DHRINIIDTPGHVD------------FTI-EVERSLRVLDGAVAVF-DAVGGVEPQSE- 117 (693)
T ss_pred ---HhCCCCEeccEEEEEEC-CeEEEEEeCCCcHH------------HHH-HHHHHHHHcCEEEEEE-ECCCCcchhhH-
Confidence 11234443333334333 46899999999543 112 2567778899877755 56666655553
Q ss_pred HHHHHhCCCCCceEEEeccCcccCcc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.+++.+...+.+.|+++||+|+....
T Consensus 118 ~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 118 TVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 36666777789999999999998643
No 236
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.67 E-value=1.2e-07 Score=104.02 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=75.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccc-cEEEE-----EeecCCCCcceeeccCCCCccCChHHHHHHH
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRR-PLVLQ-----LHQTEGGTDYAEFLHAPRKKFTDFAAVRKEI 107 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~-p~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 107 (625)
....|+|||..++|||||+++|+... +..++. .-.+. ..++.+.-.|+. +.+..
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~------g~i~~~~~~~~~~~~~~~g~~~~~~~~a~--------------~~D~~ 85 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDT------KQIYEDQLASLHNDSKRHGTQGEKLDLAL--------------LVDGL 85 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhc------CCCcHHHHHHHHHHHHhcCCCccccchhh--------------hccCC
Confidence 56799999999999999999999653 222210 00000 000000000110 11111
Q ss_pred HHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc
Q 006928 108 SDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI 187 (625)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~ 187 (625)
.++ ...++|-+.-.... ..+...++||||||. .+....++.. +..+|+++|+| +++..+
T Consensus 86 ~eE------r~rgiTid~~~~~~-~~~~~~i~~iDTPGh------------~~f~~~~~~~-l~~aD~allVV-Da~~G~ 144 (474)
T PRK05124 86 QAE------REQGITIDVAYRYF-STEKRKFIIADTPGH------------EQYTRNMATG-ASTCDLAILLI-DARKGV 144 (474)
T ss_pred hHH------hhcCCCeEeeEEEe-ccCCcEEEEEECCCc------------HHHHHHHHHH-HhhCCEEEEEE-ECCCCc
Confidence 111 12334444332222 334568999999992 1233445444 58899877754 565544
Q ss_pred ccH--HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 188 ATS--DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 188 ~~~--~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
..+ +.+.++..+.. .+.|+|+||+|+.+.
T Consensus 145 ~~qt~~~~~l~~~lg~--~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 145 LDQTRRHSFIATLLGI--KHLVVAVNKMDLVDY 175 (474)
T ss_pred cccchHHHHHHHHhCC--CceEEEEEeeccccc
Confidence 332 33335554431 468899999999853
No 237
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.65 E-value=3.3e-07 Score=82.72 Aligned_cols=155 Identities=15% Similarity=0.225 Sum_probs=98.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
-+|.++|.-||||||+++.|.|.+. +...+|..- ++.+
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf---~Ikt------------------------------------ 54 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDT---DTISPTLGF---QIKT------------------------------------ 54 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCc---cccCCccce---eeEE------------------------------------
Confidence 3899999999999999999999762 222222222 1111
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
+++ ....|+++|.-| +..+++...+|.+..|.+|+||+++ ....-++..+.
T Consensus 55 ------------l~~---~~~~L~iwDvGG-------------q~~lr~~W~nYfestdglIwvvDss-D~~r~~e~~~~ 105 (185)
T KOG0073|consen 55 ------------LEY---KGYTLNIWDVGG-------------QKTLRSYWKNYFESTDGLIWVVDSS-DRMRMQECKQE 105 (185)
T ss_pred ------------EEe---cceEEEEEEcCC-------------cchhHHHHHHhhhccCeEEEEEECc-hHHHHHHHHHH
Confidence 111 126799999998 3445889999999999999988764 33444444433
Q ss_pred HHHh----CCCCCceEEEeccCcccCccc--cHHHHHhCccc--ccCCCeEEEEeCChhhhhccCCHHHHHHHH
Q 006928 196 AREV----DPTGERTFGVLTKLDLMDKGT--NALEVLEGRSY--RLQHPWVGIVNRSQADINKNVDMIAARRKE 261 (625)
Q Consensus 196 ~~~~----d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~--~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e 261 (625)
++.+ .-.|.+.+++.||.|+...-. ++..++.-+.. ......+.+...+.+++.++++++.....+
T Consensus 106 L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 106 LTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 3332 235789999999999873311 22222222222 222344556666777777777777766655
No 238
>PRK00049 elongation factor Tu; Reviewed
Probab=98.65 E-value=8.5e-08 Score=103.21 Aligned_cols=130 Identities=17% Similarity=0.224 Sum_probs=72.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
-.|+++|..++|||||+++|++.. ...+.+ .. ..|. . .|. ..+ +
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~-~~~g~~----~~-----------~~~~-~--------~d~--~~~------E--- 56 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVL-AKKGGA----EA-----------KAYD-Q--------IDK--APE------E--- 56 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhh-hhccCC----cc-----------cchh-h--------ccC--ChH------H---
Confidence 369999999999999999999742 011100 00 0000 0 000 000 0
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
...+++-+.....+. .+...++||||||.. +.+..+ ...+..+|+++++| ++......++ ..+
T Consensus 57 -~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~------------~f~~~~-~~~~~~aD~~llVV-Da~~g~~~qt-~~~ 119 (396)
T PRK00049 57 -KARGITINTAHVEYE-TEKRHYAHVDCPGHA------------DYVKNM-ITGAAQMDGAILVV-SAADGPMPQT-REH 119 (396)
T ss_pred -HhcCeEEeeeEEEEc-CCCeEEEEEECCCHH------------HHHHHH-HhhhccCCEEEEEE-ECCCCCchHH-HHH
Confidence 112333333333332 344678999999942 233444 34467899877754 5555444332 224
Q ss_pred HHHhCCCCCceE-EEeccCcccCc
Q 006928 196 AREVDPTGERTF-GVLTKLDLMDK 218 (625)
Q Consensus 196 ~~~~d~~~~rti-~VltK~D~~~~ 218 (625)
+..+...+.|.+ +++||+|+++.
T Consensus 120 ~~~~~~~g~p~iiVvvNK~D~~~~ 143 (396)
T PRK00049 120 ILLARQVGVPYIVVFLNKCDMVDD 143 (396)
T ss_pred HHHHHHcCCCEEEEEEeecCCcch
Confidence 444455577876 68999999853
No 239
>PLN00023 GTP-binding protein; Provisional
Probab=98.65 E-value=1e-07 Score=97.66 Aligned_cols=69 Identities=12% Similarity=0.086 Sum_probs=44.0
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HHHHHHHHhCC-----------
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVDP----------- 201 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~~l~l~~~~d~----------- 201 (625)
..+.|+||+|- +..+.+...|+++++++|+|.+-.+. -+.. .+++.+.....
T Consensus 83 v~LqIWDTAGq-------------ErfrsL~~~yyr~AdgiILVyDITdr-~SFenL~kWl~eI~~~~~~s~p~~s~~~~ 148 (334)
T PLN00023 83 FFVELWDVSGH-------------ERYKDCRSLFYSQINGVIFVHDLSQR-RTKTSLQKWASEVAATGTFSAPLGSGGPG 148 (334)
T ss_pred EEEEEEECCCC-------------hhhhhhhHHhccCCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhccccccccccccc
Confidence 34789999992 33467788899999998886654332 1111 22322332210
Q ss_pred -CCCceEEEeccCcccCc
Q 006928 202 -TGERTFGVLTKLDLMDK 218 (625)
Q Consensus 202 -~~~rti~VltK~D~~~~ 218 (625)
...++++|.||+|+...
T Consensus 149 ~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 149 GLPVPYIVIGNKADIAPK 166 (334)
T ss_pred CCCCcEEEEEECcccccc
Confidence 13689999999999654
No 240
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.65 E-value=3.5e-07 Score=80.91 Aligned_cols=115 Identities=23% Similarity=0.262 Sum_probs=77.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
..+++||-|+|||||++|.+...++ -++ -++|+-. +|+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~-~ed-miptvGf---nmr------------------------------------- 58 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQY-LED-MIPTVGF---NMR------------------------------------- 58 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccc-hhh-hcccccc---eeE-------------------------------------
Confidence 3789999999999999999986554 111 1222222 111
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc---cHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA---TSDA 192 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~---~~~~ 192 (625)
-...++..+.++|+|| +..++.|...|.+..++|+.+|++|..+-- .++.
T Consensus 59 --------------k~tkgnvtiklwD~gG-------------q~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL 111 (186)
T KOG0075|consen 59 --------------KVTKGNVTIKLWDLGG-------------QPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSEL 111 (186)
T ss_pred --------------EeccCceEEEEEecCC-------------CccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHH
Confidence 2233456688999999 233488999999999998888887764322 2233
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
..++....-.|.|.++.-||.|+-+.-
T Consensus 112 ~~LL~k~~l~gip~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 112 HDLLDKPSLTGIPLLVLGNKIDLPGAL 138 (186)
T ss_pred HHHhcchhhcCCcEEEecccccCcccc
Confidence 334433344689999999999987653
No 241
>PLN03126 Elongation factor Tu; Provisional
Probab=98.65 E-value=1.3e-07 Score=103.43 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=74.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
-.|+++|..++|||||+++|++..- .+..+.+-.. .+.|... + ++
T Consensus 82 ~ni~iiGhvd~GKSTLi~~Ll~~~~-----~i~~~~~~~~--------------------~~~D~~~------~--Er-- 126 (478)
T PLN03126 82 VNIGTIGHVDHGKTTLTAALTMALA-----SMGGSAPKKY--------------------DEIDAAP------E--ER-- 126 (478)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhh-----hhcccccccc--------------------ccccCCh------h--HH--
Confidence 3589999999999999999997532 1112222000 0001100 0 11
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
..+++-+.....+.. +...++|||+||. .+.+.++ ..-+..+|+++|+| ++..+...+. .+.
T Consensus 127 --~rGiTi~~~~~~~~~-~~~~i~liDtPGh------------~~f~~~~-~~g~~~aD~ailVV-da~~G~~~qt-~e~ 188 (478)
T PLN03126 127 --ARGITINTATVEYET-ENRHYAHVDCPGH------------ADYVKNM-ITGAAQMDGAILVV-SGADGPMPQT-KEH 188 (478)
T ss_pred --hCCeeEEEEEEEEec-CCcEEEEEECCCH------------HHHHHHH-HHHHhhCCEEEEEE-ECCCCCcHHH-HHH
Confidence 123443333333333 3468999999993 3344455 44456899877754 5555554443 223
Q ss_pred HHHhCCCCCc-eEEEeccCcccCc
Q 006928 196 AREVDPTGER-TFGVLTKLDLMDK 218 (625)
Q Consensus 196 ~~~~d~~~~r-ti~VltK~D~~~~ 218 (625)
+..+...|.+ .|+++||+|+.+.
T Consensus 189 ~~~~~~~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 189 ILLAKQVGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHHcCCCeEEEEEecccccCH
Confidence 4444455777 6789999999864
No 242
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.64 E-value=2.7e-08 Score=88.01 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
+|+|+|+.++|||||+++|.+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999875
No 243
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.64 E-value=6.8e-08 Score=95.82 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=44.0
Q ss_pred cCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEe
Q 006928 132 SPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVL 210 (625)
Q Consensus 132 ~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~r-ti~Vl 210 (625)
.+....++++||||.. .. +...++.+|++++ |++++.++..++. .+...+...|.+ +|+|+
T Consensus 79 ~~~~~~i~~vDtPg~~---------------~~-~l~~ak~aDvVll-viDa~~~~~~~~~-~i~~~l~~~g~p~vi~Vv 140 (225)
T cd01882 79 TGKKRRLTFIECPNDI---------------NA-MIDIAKVADLVLL-LIDASFGFEMETF-EFLNILQVHGFPRVMGVL 140 (225)
T ss_pred ecCCceEEEEeCCchH---------------HH-HHHHHHhcCEEEE-EEecCcCCCHHHH-HHHHHHHHcCCCeEEEEE
Confidence 3456789999999832 11 2234577897666 5556655554443 244545445667 45699
Q ss_pred ccCcccCcc
Q 006928 211 TKLDLMDKG 219 (625)
Q Consensus 211 tK~D~~~~~ 219 (625)
||+|++...
T Consensus 141 nK~D~~~~~ 149 (225)
T cd01882 141 THLDLFKKN 149 (225)
T ss_pred eccccCCcH
Confidence 999998543
No 244
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.64 E-value=1.3e-07 Score=91.66 Aligned_cols=66 Identities=24% Similarity=0.138 Sum_probs=41.4
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccH--HHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATS--DAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~~--~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.|+||||... .+...|++++|++|++..-.+. .+.+. .+...++...+ +.|.|+|.||
T Consensus 66 v~l~iwDTaG~~~---------------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK 129 (195)
T cd01873 66 VSLRLWDTFGDHD---------------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCK 129 (195)
T ss_pred EEEEEEeCCCChh---------------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence 5689999999532 1223488999988876554332 12221 13333443333 5789999999
Q ss_pred CcccC
Q 006928 213 LDLMD 217 (625)
Q Consensus 213 ~D~~~ 217 (625)
+|+.+
T Consensus 130 ~DL~~ 134 (195)
T cd01873 130 LDLRY 134 (195)
T ss_pred hhccc
Confidence 99864
No 245
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.62 E-value=1.3e-07 Score=90.95 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
.|+|+|+.++|||||+++|.+..+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~ 26 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF 26 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999986554
No 246
>PRK10218 GTP-binding protein; Provisional
Probab=98.62 E-value=1.6e-07 Score=105.35 Aligned_cols=131 Identities=15% Similarity=0.239 Sum_probs=76.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC-cccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~-~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
++-.|+++|..++|||||+++|++.. .++.... +. ...+ |...
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~-~~----~~v~---------------------D~~~---------- 47 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE-TQ----ERVM---------------------DSND---------- 47 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccc-cc----eeee---------------------cccc----------
Confidence 46689999999999999999999632 1111100 00 0000 0000
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
.....+++-..-...+.+ +...+.||||||..+ +...+..+++.+|++|+++. +..+...+..
T Consensus 48 --~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~d-------------f~~~v~~~l~~aDg~ILVVD-a~~G~~~qt~ 110 (607)
T PRK10218 48 --LEKERGITILAKNTAIKW-NDYRINIVDTPGHAD-------------FGGEVERVMSMVDSVLLVVD-AFDGPMPQTR 110 (607)
T ss_pred --ccccCceEEEEEEEEEec-CCEEEEEEECCCcch-------------hHHHHHHHHHhCCEEEEEEe-cccCccHHHH
Confidence 011223333222233333 346799999999543 13456788999999887654 4444433332
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
. .++.+...+.|.|+|+||+|+...
T Consensus 111 ~-~l~~a~~~gip~IVviNKiD~~~a 135 (607)
T PRK10218 111 F-VTKKAFAYGLKPIVVINKVDRPGA 135 (607)
T ss_pred H-HHHHHHHcCCCEEEEEECcCCCCC
Confidence 2 333344467899999999998643
No 247
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.62 E-value=5.4e-07 Score=93.65 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
...|.|.|.+|||||||+++|...
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998764
No 248
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.59 E-value=6.1e-07 Score=93.52 Aligned_cols=142 Identities=18% Similarity=0.228 Sum_probs=83.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|.|||+-++|||||+|+++|.-++|.-++.--| +++.+.+..
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k-------------------------------------~Ra~DELpq 61 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDK-------------------------------------ERAQDELPQ 61 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHH-------------------------------------hHHHhccCc
Confidence 7999999999999999999999666633210000 000111111
Q ss_pred CC----------CccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHH----------------HHHHHHHHHhh
Q 006928 117 KS----------KQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIV----------------EDIENMVRSYV 170 (625)
Q Consensus 117 ~~----------~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~----------------~~i~~~v~~yi 170 (625)
+. +-+-++.+.+.....-..++.|||++|+.....-|.-+... +..+--+++-|
T Consensus 62 s~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI 141 (492)
T TIGR02836 62 SAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVI 141 (492)
T ss_pred CCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHH
Confidence 11 11222334444433333578999999998755443322111 11122256677
Q ss_pred c-CCCEEEEEEecCC------CccccHHHHHHHHHhCCCCCceEEEeccCccc
Q 006928 171 E-KPSCIILAISPAN------QDIATSDAIKLAREVDPTGERTFGVLTKLDLM 216 (625)
Q Consensus 171 ~-~~~~iIl~v~~a~------~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 216 (625)
. +++..|+++++++ .++...+ .++..++...++|.++|+||.|-.
T Consensus 142 ~dhstIgivVtTDgsi~dI~Re~y~~aE-e~~i~eLk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 142 QEHSTIGVVVTTDGTITDIPREDYVEAE-ERVIEELKELNKPFIILLNSTHPY 193 (492)
T ss_pred HhcCcEEEEEEcCCCccccccccchHHH-HHHHHHHHhcCCCEEEEEECcCCC
Confidence 7 7886666554664 2233332 347788888999999999999944
No 249
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=2.2e-07 Score=82.10 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=80.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|.|+|+.|+||+|++-+-.|-.|-| ..++-.-+...
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~---afvsTvGidFK---------------------------------------- 59 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTS---AFVSTVGIDFK---------------------------------------- 59 (193)
T ss_pred eEEEEccCCccchhhhHHhhcccccc---ceeeeeeeeEE----------------------------------------
Confidence 79999999999999999999998833 11111110000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc--cHHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA--TSDAIK 194 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~--~~~~l~ 194 (625)
-+ .+ ..+.....|.++||.| .+..+.++-.|++.++.+||+...+|..-- -+++..
T Consensus 60 ------vK--Tv-yr~~kRiklQiwDTag-------------qEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~t 117 (193)
T KOG0093|consen 60 ------VK--TV-YRSDKRIKLQIWDTAG-------------QERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWIT 117 (193)
T ss_pred ------Ee--Ee-eecccEEEEEEEeccc-------------chhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHH
Confidence 00 00 1111225689999999 344678889999999999999877764322 234544
Q ss_pred HHHHhCCCCCceEEEeccCcccCcc
Q 006928 195 LAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.++.+.....++|+|-||||+-++.
T Consensus 118 qIktysw~naqvilvgnKCDmd~eR 142 (193)
T KOG0093|consen 118 QIKTYSWDNAQVILVGNKCDMDSER 142 (193)
T ss_pred HheeeeccCceEEEEecccCCccce
Confidence 5555666788999999999987654
No 250
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.57 E-value=1.1e-06 Score=81.50 Aligned_cols=131 Identities=16% Similarity=0.200 Sum_probs=84.6
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccc------cccEEEEEeecCCCCcceeeccCCCCccCChHHHHHH
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT------RRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKE 106 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~T------r~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (625)
..-+.|+|+|.+++||+|++.+++... ++.-.+..+ .+|+.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~-~v~t~~~~~~~s~k~kr~tT-------------------------------- 54 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKP-LVITEADASSVSGKGKRPTT-------------------------------- 54 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccc-cceeecccccccccccccee--------------------------------
Confidence 456799999999999999999999874 221111111 11111
Q ss_pred HHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc
Q 006928 107 ISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD 186 (625)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d 186 (625)
+..+.-.+++ .+...+.|+|||| ++.++-|+.-+.+.+..+|++|+++ .+
T Consensus 55 --------------va~D~g~~~~--~~~~~v~LfgtPG-------------q~RF~fm~~~l~~ga~gaivlVDss-~~ 104 (187)
T COG2229 55 --------------VAMDFGSIEL--DEDTGVHLFGTPG-------------QERFKFMWEILSRGAVGAIVLVDSS-RP 104 (187)
T ss_pred --------------EeecccceEE--cCcceEEEecCCC-------------cHHHHHHHHHHhCCcceEEEEEecC-CC
Confidence 1122222222 2335789999999 4556778888889999888866544 33
Q ss_pred cccHHHHHHHHHhCCCC-CceEEEeccCcccCccc--cHHHHHh
Q 006928 187 IATSDAIKLAREVDPTG-ERTFGVLTKLDLMDKGT--NALEVLE 227 (625)
Q Consensus 187 ~~~~~~l~l~~~~d~~~-~rti~VltK~D~~~~~~--~~~~~l~ 227 (625)
... .+..+...+.... .|.++.+||.|+.+... .+.+++.
T Consensus 105 ~~~-~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~ 147 (187)
T COG2229 105 ITF-HAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALK 147 (187)
T ss_pred cch-HHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHH
Confidence 333 4555666555554 89999999999987643 3455554
No 251
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.56 E-value=3.3e-07 Score=101.61 Aligned_cols=137 Identities=17% Similarity=0.234 Sum_probs=75.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+.-.|+|||..+||||||+|+|+-.. |...+.+. +. ..+ .......|+.... +
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~------g~i~~~g~-v~---~~g---------~~~~t~~D~~~~E--------~ 62 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYG------GAIQTAGA-VK---GRG---------SQRHAKSDWMEME--------K 62 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhC------CCccccce-ec---ccc---------ccccccCCCCHHH--------H
Confidence 46689999999999999999996321 11112210 00 000 0000112222111 0
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
..++|-..-...+.. +...+.|+||||... +...+.+++..+|++|++|.+ ...+..+. .
T Consensus 63 ----~rgisi~~~~~~~~~-~~~~inliDTPG~~d-------------f~~~~~~~l~~aD~aIlVvDa-~~gv~~~t-~ 122 (527)
T TIGR00503 63 ----QRGISITTSVMQFPY-RDCLVNLLDTPGHED-------------FSEDTYRTLTAVDNCLMVIDA-AKGVETRT-R 122 (527)
T ss_pred ----hcCCcEEEEEEEEee-CCeEEEEEECCChhh-------------HHHHHHHHHHhCCEEEEEEEC-CCCCCHHH-H
Confidence 122332222222322 346899999999532 234467788899998876654 43443332 2
Q ss_pred HHHHHhCCCCCceEEEeccCcccC
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~ 217 (625)
.+.+.....+.|+++++||+|+..
T Consensus 123 ~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 123 KLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred HHHHHHHhcCCCEEEEEECccccC
Confidence 233444446789999999999864
No 252
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=6.4e-07 Score=95.97 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=80.4
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
...|-|+|+|.--.||||||.+|=+.++-+...|
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaG---------------------------------------------- 36 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAG---------------------------------------------- 36 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCC----------------------------------------------
Confidence 4689999999999999999999988776333333
Q ss_pred hhhCCCCccccccEEEEEecC--CCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH
Q 006928 113 RITGKSKQISNIPIQLSIYSP--NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS 190 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~--~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~ 190 (625)
+++.+.=-.++..+ +.+.++|+|||| .+.+..|=.+=.+=+|++|| |++++..+-.|
T Consensus 37 -------GITQhIGA~~v~~~~~~~~~itFiDTPG-------------HeAFt~mRaRGa~vtDIaIL-VVa~dDGv~pQ 95 (509)
T COG0532 37 -------GITQHIGAYQVPLDVIKIPGITFIDTPG-------------HEAFTAMRARGASVTDIAIL-VVAADDGVMPQ 95 (509)
T ss_pred -------ceeeEeeeEEEEeccCCCceEEEEcCCc-------------HHHHHHHHhcCCccccEEEE-EEEccCCcchh
Confidence 22222222233333 458899999999 34445553333456887777 55777766655
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
... -...+...+.|+++.+||+|+.+..
T Consensus 96 TiE-AI~hak~a~vP~iVAiNKiDk~~~n 123 (509)
T COG0532 96 TIE-AINHAKAAGVPIVVAINKIDKPEAN 123 (509)
T ss_pred HHH-HHHHHHHCCCCEEEEEecccCCCCC
Confidence 432 3333445689999999999998554
No 253
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.56 E-value=8.4e-07 Score=87.39 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=52.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH---HHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL---AREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l---~~~~d~~~~rti~VltK 212 (625)
..+.++||||-.. ...+...|+..++++|+++ +.+...+-.....+ ..... ...+.++|.||
T Consensus 58 i~i~~~Dt~g~~~-------------~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK 122 (215)
T PTZ00132 58 ICFNVWDTAGQEK-------------FGGLRDGYYIKGQCAIIMF-DVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNK 122 (215)
T ss_pred EEEEEEECCCchh-------------hhhhhHHHhccCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 4678999999321 2445567888899877755 44432222222222 22222 34788889999
Q ss_pred CcccCccc--cHHHHHhCcccccCCCeEEEEeCChhhhhcc
Q 006928 213 LDLMDKGT--NALEVLEGRSYRLQHPWVGIVNRSQADINKN 251 (625)
Q Consensus 213 ~D~~~~~~--~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (625)
+|+.+... ....+.. ..+..|+.+...+..+++..
T Consensus 123 ~Dl~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 123 VDVKDRQVKARQITFHR----KKNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred ccCccccCCHHHHHHHH----HcCCEEEEEeCCCCCCHHHH
Confidence 99865321 1122211 22345666666665554443
No 254
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.56 E-value=3.4e-07 Score=99.77 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=46.8
Q ss_pred ccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--cccH--HHHHH
Q 006928 120 QISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IATS--DAIKL 195 (625)
Q Consensus 120 ~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d--~~~~--~~l~l 195 (625)
+++-+.....+... ...++||||||. .+.+..+ ..++..+|++||++...+.. ...+ ..+.+
T Consensus 70 g~Tid~~~~~~~~~-~~~i~iiDtpGh------------~~f~~~~-~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~ 135 (426)
T TIGR00483 70 GVTIDVAHWKFETD-KYEVTIVDCPGH------------RDFIKNM-ITGASQADAAVLVVAVGDGEFEVQPQTREHAFL 135 (426)
T ss_pred CceEEEEEEEEccC-CeEEEEEECCCH------------HHHHHHH-HhhhhhCCEEEEEEECCCCCcccCCchHHHHHH
Confidence 34444444444333 468999999992 1222333 44568899888866544321 2111 22234
Q ss_pred HHHhCCCCCceEEEeccCcccC
Q 006928 196 AREVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~ 217 (625)
++.+. ..+.|+|+||+|+.+
T Consensus 136 ~~~~~--~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 136 ARTLG--INQLIVAINKMDSVN 155 (426)
T ss_pred HHHcC--CCeEEEEEEChhccC
Confidence 44432 246889999999975
No 255
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.56 E-value=3.4e-07 Score=85.65 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
+|+|+|+.++|||||+.++++..|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f 25 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY 25 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 589999999999999999887765
No 256
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.54 E-value=4e-07 Score=105.23 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=47.3
Q ss_pred CCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 006928 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (625)
Q Consensus 134 ~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 213 (625)
....+.||||||..+. ...+..++..+|++|+++ ++..++..+. ..+.+.+...+.+.++|+||+
T Consensus 84 ~~~~i~liDTPG~~~f-------------~~~~~~al~~aD~~llVv-da~~g~~~~t-~~~~~~~~~~~~p~ivviNKi 148 (720)
T TIGR00490 84 NEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVV-CAVEGVMPQT-ETVLRQALKENVKPVLFINKV 148 (720)
T ss_pred CceEEEEEeCCCcccc-------------HHHHHHHHHhcCEEEEEE-ecCCCCCccH-HHHHHHHHHcCCCEEEEEECh
Confidence 3467999999997642 234677889999887755 5554443332 224444445567889999999
Q ss_pred cccC
Q 006928 214 DLMD 217 (625)
Q Consensus 214 D~~~ 217 (625)
|...
T Consensus 149 D~~~ 152 (720)
T TIGR00490 149 DRLI 152 (720)
T ss_pred hccc
Confidence 9864
No 257
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.52 E-value=2.9e-07 Score=87.04 Aligned_cols=119 Identities=20% Similarity=0.342 Sum_probs=64.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+-|.|+++|+.+||||+|+..|+...+. .++|........
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~----~T~tS~e~n~~~------------------------------------ 41 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTV----PTVTSMENNIAY------------------------------------ 41 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEEC------------------------------------
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcC----CeeccccCCceE------------------------------------
Confidence 4589999999999999999999987542 222222211110
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHH--hhcCCCEEEEEEecCCCccccHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRS--YVEKPSCIILAISPANQDIATSD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~--yi~~~~~iIl~v~~a~~d~~~~~ 191 (625)
.+..+....+.+||+||-.+.. ..+... |+..+.+||++|+++...-.-.+
T Consensus 42 ---------------~~~~~~~~~~~lvD~PGH~rlr------------~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~ 94 (181)
T PF09439_consen 42 ---------------NVNNSKGKKLRLVDIPGHPRLR------------SKLLDELKYLSNAKGIIFVVDSSTDQKELRD 94 (181)
T ss_dssp ---------------CGSSTCGTCECEEEETT-HCCC------------HHHHHHHHHHGGEEEEEEEEETTTHHHHHHH
T ss_pred ---------------EeecCCCCEEEEEECCCcHHHH------------HHHHHhhhchhhCCEEEEEEeCccchhhHHH
Confidence 0112334678999999965532 223333 68889998887776542111122
Q ss_pred HHHH------HHHhCCCCCceEEEeccCcccCcc
Q 006928 192 AIKL------AREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 192 ~l~l------~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+.++ .....+.+.|++++.||.|+....
T Consensus 95 ~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 95 VAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred HHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 2111 122346788999999999997643
No 258
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.52 E-value=4.3e-07 Score=98.13 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|.-++|||||+++|+|.
T Consensus 11 ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 11 NIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred EEEEEccCCCCHHHHHHHhhCe
Confidence 6999999999999999999875
No 259
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.50 E-value=2.5e-07 Score=92.46 Aligned_cols=128 Identities=17% Similarity=0.257 Sum_probs=87.3
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
.+.|.|+|||..|||||||+++|++..+.|.+.-..|--||.=
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h------------------------------------- 218 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLH------------------------------------- 218 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhh-------------------------------------
Confidence 5899999999999999999999999999998877777666110
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH--
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS-- 190 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~-- 190 (625)
. ..-|......+.||=|+++. -|..+.+.++.. ..-+..+|.|+.+++..+-++..+
T Consensus 219 -~---------------a~Lpsg~~vlltDTvGFisd----LP~~LvaAF~AT-LeeVaeadlllHvvDiShP~ae~q~e 277 (410)
T KOG0410|consen 219 -S---------------AHLPSGNFVLLTDTVGFISD----LPIQLVAAFQAT-LEEVAEADLLLHVVDISHPNAEEQRE 277 (410)
T ss_pred -h---------------ccCCCCcEEEEeechhhhhh----CcHHHHHHHHHH-HHHHhhcceEEEEeecCCccHHHHHH
Confidence 0 12234456789999999873 344455555544 445678998777665555455444
Q ss_pred HHHHHHHHhCCC----CCceEEEeccCcccCc
Q 006928 191 DAIKLAREVDPT----GERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~~~~d~~----~~rti~VltK~D~~~~ 218 (625)
..+..+++++-. -.+.|-|=||+|....
T Consensus 278 ~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~ 309 (410)
T KOG0410|consen 278 TVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED 309 (410)
T ss_pred HHHHHHHhcCCCcHHHHhHHHhhccccccccc
Confidence 345555666532 3456677777776543
No 260
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.50 E-value=3e-07 Score=85.84 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPR 63 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~ 63 (625)
..|+++|.+|+|||||+|+|.|....++
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~ 130 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKV 130 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceee
Confidence 3688999999999999999999876443
No 261
>PRK13351 elongation factor G; Reviewed
Probab=98.49 E-value=6.8e-07 Score=103.29 Aligned_cols=134 Identities=15% Similarity=0.229 Sum_probs=77.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|..++|||||+++|+... +...+ .. .... +....|+.... +
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~------g~~~~-~~-----~v~~-----------~~~~~d~~~~e--------~ 55 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYT------GKIHK-MG-----EVED-----------GTTVTDWMPQE--------Q 55 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhc------CCccc-cc-----cccC-----------CcccCCCCHHH--------H
Confidence 45689999999999999999998542 11000 00 0000 01111221110 0
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
. .+..+......++. +...+.||||||..+ +...+..+++.+|++|+++ +++.+...+. .
T Consensus 56 ~--r~~ti~~~~~~~~~---~~~~i~liDtPG~~d-------------f~~~~~~~l~~aD~~ilVv-d~~~~~~~~~-~ 115 (687)
T PRK13351 56 E--RGITIESAATSCDW---DNHRINLIDTPGHID-------------FTGEVERSLRVLDGAVVVF-DAVTGVQPQT-E 115 (687)
T ss_pred h--cCCCcccceEEEEE---CCEEEEEEECCCcHH-------------HHHHHHHHHHhCCEEEEEE-eCCCCCCHHH-H
Confidence 0 11122223333332 246899999999542 2455778899999887755 4544443332 2
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+.+.+...+.|.++|+||+|+...
T Consensus 116 ~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 116 TVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHhcCCCEEEEEECCCCCCC
Confidence 3445555568899999999998754
No 262
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.8e-06 Score=91.84 Aligned_cols=144 Identities=16% Similarity=0.220 Sum_probs=91.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
...|-|.|+|.--.||||||.+|-+.++-..
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~------------------------------------------------- 181 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAG------------------------------------------------- 181 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehh-------------------------------------------------
Confidence 4789999999999999999999987765111
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
...|++...=-..+.-|....+||.|||| ...+..|-.+-..-.|.++| |+++.+..-.+..
T Consensus 182 ----E~GGITQhIGAF~V~~p~G~~iTFLDTPG-------------HaAF~aMRaRGA~vtDIvVL-VVAadDGVmpQT~ 243 (683)
T KOG1145|consen 182 ----EAGGITQHIGAFTVTLPSGKSITFLDTPG-------------HAAFSAMRARGANVTDIVVL-VVAADDGVMPQTL 243 (683)
T ss_pred ----hcCCccceeceEEEecCCCCEEEEecCCc-------------HHHHHHHHhccCccccEEEE-EEEccCCccHhHH
Confidence 11233333333345566778999999999 33345554444455775555 6677766655533
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccccH----HHHHhCccccc-CCCeEEEEeCChh
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNA----LEVLEGRSYRL-QHPWVGIVNRSQA 246 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~~~~----~~~l~~~~~~l-~~g~~~v~~~s~~ 246 (625)
+.++.....+.|+|+.+||+|.. +.+. .+++....... -.|-+.+.+.|+.
T Consensus 244 -EaIkhAk~A~VpiVvAinKiDkp--~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl 299 (683)
T KOG1145|consen 244 -EAIKHAKSANVPIVVAINKIDKP--GANPEKVKRELLSQGIVVEDLGGDVQVIPISAL 299 (683)
T ss_pred -HHHHHHHhcCCCEEEEEeccCCC--CCCHHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence 23444455679999999999954 4433 33433322222 2356777888774
No 263
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.47 E-value=1.2e-06 Score=102.82 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=47.4
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
...++||||||.. +.+.+ +...++.+|+.|++| ++..++..+.. .+.+.+...+.+.|+++||+|
T Consensus 97 ~~~inliDtPGh~------------dF~~e-~~~al~~~D~ailVv-da~~Gv~~~t~-~~~~~~~~~~~p~i~~iNK~D 161 (843)
T PLN00116 97 EYLINLIDSPGHV------------DFSSE-VTAALRITDGALVVV-DCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 161 (843)
T ss_pred ceEEEEECCCCHH------------HHHHH-HHHHHhhcCEEEEEE-ECCCCCcccHH-HHHHHHHHCCCCEEEEEECCc
Confidence 3457899999943 22333 356668899887755 56666655543 356666777899999999999
Q ss_pred cc
Q 006928 215 LM 216 (625)
Q Consensus 215 ~~ 216 (625)
..
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 97
No 264
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.47 E-value=8.3e-07 Score=102.91 Aligned_cols=133 Identities=14% Similarity=0.239 Sum_probs=76.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+.-.|+|+|..++|||||+++|+... |..++.- . .+..+.|+... +.++
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~~--------~-----------g~~~~~D~~~~--E~~r---- 67 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEEL--------A-----------GEQLALDFDEE--EQAR---- 67 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchhh--------c-----------CcceecCccHH--HHHh----
Confidence 46689999999999999999998543 2222210 0 00111222211 1111
Q ss_pred hhCCCCccccccEEEEEe-cCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 114 ITGKSKQISNIPIQLSIY-SPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~-~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
| -++....+.+... ......++||||||..+. ...+...+..+|++|++| ++..+...+..
T Consensus 68 --g--iTi~~~~~~~~~~~~~~~~~i~liDtPG~~df-------------~~~~~~~l~~~D~avlVv-da~~g~~~~t~ 129 (731)
T PRK07560 68 --G--ITIKAANVSMVHEYEGKEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVV-DAVEGVMPQTE 129 (731)
T ss_pred --h--hhhhccceEEEEEecCCcEEEEEEcCCCccCh-------------HHHHHHHHHhcCEEEEEE-ECCCCCCccHH
Confidence 1 1122223333221 123456899999997542 234567788899887755 45555444332
Q ss_pred HHHHHHhCCCCCceEEEeccCccc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLM 216 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~ 216 (625)
.+.+.+...+.+.|+++||+|..
T Consensus 130 -~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 130 -TVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred -HHHHHHHHcCCCeEEEEECchhh
Confidence 24444444467889999999986
No 265
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.44 E-value=6e-07 Score=84.99 Aligned_cols=30 Identities=33% Similarity=0.324 Sum_probs=25.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCccccc
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~ 64 (625)
..+++|+|.+|+|||||+|+|+|....+++
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~ 146 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVG 146 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceec
Confidence 458999999999999999999998764443
No 266
>PTZ00416 elongation factor 2; Provisional
Probab=98.43 E-value=1.1e-06 Score=102.84 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=48.1
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
..++|+||||... . ..-+...++.+|++|+ |+++..++..+.. .+.+.+...+.|.|+++||+|+
T Consensus 92 ~~i~liDtPG~~~------------f-~~~~~~al~~~D~ail-Vvda~~g~~~~t~-~~~~~~~~~~~p~iv~iNK~D~ 156 (836)
T PTZ00416 92 FLINLIDSPGHVD------------F-SSEVTAALRVTDGALV-VVDCVEGVCVQTE-TVLRQALQERIRPVLFINKVDR 156 (836)
T ss_pred eEEEEEcCCCHHh------------H-HHHHHHHHhcCCeEEE-EEECCCCcCccHH-HHHHHHHHcCCCEEEEEEChhh
Confidence 4589999999643 2 2224667788998777 4556666665554 3667777778899999999999
Q ss_pred c
Q 006928 216 M 216 (625)
Q Consensus 216 ~ 216 (625)
.
T Consensus 157 ~ 157 (836)
T PTZ00416 157 A 157 (836)
T ss_pred h
Confidence 7
No 267
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.41 E-value=1.6e-06 Score=94.42 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=41.0
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--HHHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--SDAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~--~~~l~l~~~~d~~~~rti~VltK 212 (625)
..++|||+||- .+.+..|+ .-+..+|.++|+| +++.. ... .+.+.++..+. -.+.|+|+||
T Consensus 117 ~~i~~IDtPGH------------~~fi~~m~-~g~~~~D~alLVV-da~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNK 180 (460)
T PTZ00327 117 RHVSFVDCPGH------------DILMATML-NGAAVMDAALLLI-AANESCPQPQTSEHLAAVEIMK--LKHIIILQNK 180 (460)
T ss_pred ceEeeeeCCCH------------HHHHHHHH-HHHhhCCEEEEEE-ECCCCccchhhHHHHHHHHHcC--CCcEEEEEec
Confidence 36899999992 33445553 3456889877755 55543 222 23343444332 1468899999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+.+.
T Consensus 181 iDlv~~ 186 (460)
T PTZ00327 181 IDLVKE 186 (460)
T ss_pred ccccCH
Confidence 999864
No 268
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.40 E-value=4.4e-07 Score=84.59 Aligned_cols=39 Identities=28% Similarity=0.291 Sum_probs=30.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccccc-cccccc
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRP 72 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~-~~Tr~p 72 (625)
.-++++++|.+|+||||++|+|+|....+.+.+ .+|+.+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~ 138 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ 138 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce
Confidence 567899999999999999999999865454433 344554
No 269
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=1.6e-06 Score=89.57 Aligned_cols=83 Identities=24% Similarity=0.435 Sum_probs=59.9
Q ss_pred CCcEEEeCCCCcccCCCCCC-ccHHHHHHHHHHHhhc-------------CCCEEEEEEecCCCccccHHHHHHHHHhCC
Q 006928 136 VNLTLIDLPGLTKVAVEGQP-ESIVEDIENMVRSYVE-------------KPSCIILAISPANQDIATSDAIKLAREVDP 201 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~-~~~~~~i~~~v~~yi~-------------~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~ 201 (625)
.+||+|||||+.+.-..... +-+...+......|+. +.||++.++.|....+..-|.. +.+.+..
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~-~Mk~l~~ 157 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIE-FMKKLSK 157 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHH-HHHHHhc
Confidence 47899999999876544221 3355566667777773 4677777787877777777765 5555554
Q ss_pred CCCceEEEeccCcccCccc
Q 006928 202 TGERTFGVLTKLDLMDKGT 220 (625)
Q Consensus 202 ~~~rti~VltK~D~~~~~~ 220 (625)
..++|-||.|.|.+.+.+
T Consensus 158 -~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 158 -KVNLIPVIAKADTLTKDE 175 (366)
T ss_pred -cccccceeeccccCCHHH
Confidence 689999999999997754
No 270
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.37 E-value=3.3e-06 Score=86.55 Aligned_cols=83 Identities=22% Similarity=0.380 Sum_probs=60.9
Q ss_pred CCcEEEeCCCCcccCCCCCC-ccHHHHHHHHHHHhhc--------------CCCEEEEEEecCCCccccHHHHHHHHHhC
Q 006928 136 VNLTLIDLPGLTKVAVEGQP-ESIVEDIENMVRSYVE--------------KPSCIILAISPANQDIATSDAIKLAREVD 200 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~-~~~~~~i~~~v~~yi~--------------~~~~iIl~v~~a~~d~~~~~~l~l~~~~d 200 (625)
.+|++|||||+.+.-..... +-+...+.+....|+. +.||++.++-|....+...|.. ..+.+.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe-~Mk~ls 160 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIE-AMKRLS 160 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHH-HHHHHh
Confidence 47999999999986655322 3355667777777773 3577777777877778777765 666676
Q ss_pred CCCCceEEEeccCcccCccc
Q 006928 201 PTGERTFGVLTKLDLMDKGT 220 (625)
Q Consensus 201 ~~~~rti~VltK~D~~~~~~ 220 (625)
. ....|-||.|.|.+...+
T Consensus 161 ~-~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 161 K-RVNLIPVIAKADTLTDDE 179 (373)
T ss_pred c-ccCeeeeeeccccCCHHH
Confidence 5 588999999999987643
No 271
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.37 E-value=3e-05 Score=80.36 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
.-+.|+|+|.+|+|||||++.|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999874
No 272
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.35 E-value=1.3e-06 Score=78.68 Aligned_cols=149 Identities=22% Similarity=0.295 Sum_probs=87.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
+++|||+.-+||||||...+..+| |-=+ -|++-. || ..++..
T Consensus 10 rlivigdstvgkssll~~ft~gkf-aels-----dptvgv----------------------df----------farlie 51 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKF-AELS-----DPTVGV----------------------DF----------FARLIE 51 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCcc-cccC-----CCccch----------------------HH----------HHHHHh
Confidence 689999999999999999998875 3111 221110 11 011111
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc-HHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT-SDAIK 194 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~-~~~l~ 194 (625)
+.......|.++||.| ++.++.++++|.+++-.++|+.+-.|. .+.. ..|+.
T Consensus 52 -------------~~pg~riklqlwdtag-------------qerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ 105 (213)
T KOG0091|consen 52 -------------LRPGYRIKLQLWDTAG-------------QERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVK 105 (213)
T ss_pred -------------cCCCcEEEEEEeeccc-------------hHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHH
Confidence 1122235689999999 678899999999998876665443332 1111 22332
Q ss_pred HHHH-hC-CCCCceEEEeccCcccCccc----cHHHHHhCcccccCCCeEEEEeCChhhhhccCC
Q 006928 195 LARE-VD-PTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (625)
Q Consensus 195 l~~~-~d-~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (625)
-|.. +. |...-...|-+|+|+..... +...+ ....++-|+....+++.+.++-.+
T Consensus 106 ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEkl----Aa~hgM~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 106 EAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKL----AASHGMAFVETSAKNGCNVEEAFD 166 (213)
T ss_pred HHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHH----HHhcCceEEEecccCCCcHHHHHH
Confidence 2222 22 54444567889999985543 12222 234566778877777655544333
No 273
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.35 E-value=1.1e-06 Score=84.73 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
.++++||.+|+|||||+|+|.+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 5799999999999999999998764
No 274
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.35 E-value=1e-06 Score=79.08 Aligned_cols=115 Identities=21% Similarity=0.209 Sum_probs=75.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
.-.|.+||+.++||||||-+.+...|=|-. |+.
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~-------~~t---------------------------------------- 43 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLH-------PTT---------------------------------------- 43 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccC-------Cce----------------------------------------
Confidence 457999999999999999999987662211 111
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccHHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATSDAI 193 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~~~~l 193 (625)
-++..++-.+.|.+. ...|.||||.| ++.++.++-+|.+.+..||++..-...| +.+- -
T Consensus 44 ----IGvDFkvk~m~vdg~-~~KlaiWDTAG-------------qErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kL--d 103 (209)
T KOG0080|consen 44 ----IGVDFKVKVMQVDGK-RLKLAIWDTAG-------------QERFRTLTPSYYRGAQGIILVYDVTSRDTFVKL--D 103 (209)
T ss_pred ----eeeeEEEEEEEEcCc-eEEEEEEeccc-------------hHhhhccCHhHhccCceeEEEEEccchhhHHhH--H
Confidence 112222222333332 35799999999 6778999999999999999875433322 2222 1
Q ss_pred HHHHHhCCC----CCceEEEeccCccc
Q 006928 194 KLAREVDPT----GERTFGVLTKLDLM 216 (625)
Q Consensus 194 ~l~~~~d~~----~~rti~VltK~D~~ 216 (625)
.+++++|-. ..-.+.|-||+|.-
T Consensus 104 ~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 104 IWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred HHHHHHHhhcCCccHhHhhhcccccch
Confidence 256666642 23356889999964
No 275
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=9.3e-07 Score=91.17 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=66.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
.++.+||-||+|||||+|||+....-+.....||=-|.+=.. .. |+.. +.+ ...+.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv-~v------------~d~r----------l~~-L~~~~ 58 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVV-YV------------PDCR----------LDE-LAEIV 58 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEE-ec------------CchH----------HHH-HHHhc
Confidence 478999999999999999999988656667788888833221 11 0000 000 01111
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEe
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAIS 181 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~ 181 (625)
+ -++.. + ...+.|||.+|++..+..|.. +-+...+-|+++|+|+.+|.
T Consensus 59 ~----c~~k~----~----~~~ve~vDIAGLV~GAs~GeG------LGNkFL~~IRevdaI~hVVr 106 (372)
T COG0012 59 K----CPPKI----R----PAPVEFVDIAGLVKGASKGEG------LGNKFLDNIREVDAIIHVVR 106 (372)
T ss_pred C----CCCcE----E----eeeeEEEEecccCCCcccCCC------cchHHHHhhhhcCeEEEEEE
Confidence 1 00111 1 146899999999998877532 24455677889999888653
No 276
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.32 E-value=9.7e-07 Score=78.12 Aligned_cols=120 Identities=18% Similarity=0.197 Sum_probs=78.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.|-..+++|++++|||||+-....-.| ..+..+++..-..++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtF-s~sYitTiGvDfkir------------------------------------- 48 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTF-SGSYITTIGVDFKIR------------------------------------- 48 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhccc-ccceEEEeeeeEEEE-------------------------------------
Confidence 455678899999999999999887654 222222222222221
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc-HH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT-SD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~-~~ 191 (625)
.+.|.| +...|.|+||.| .+.++.++..|.+.++.+|++.+-.|. .+.+ ..
T Consensus 49 -------------Tv~i~G-~~VkLqIwDtAG-------------qErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~r 101 (198)
T KOG0079|consen 49 -------------TVDING-DRVKLQIWDTAG-------------QERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKR 101 (198)
T ss_pred -------------EeecCC-cEEEEEEeeccc-------------HHHHHHHHHHHccCCceEEEEEECcchhhhHhHHH
Confidence 112222 235689999999 678899999999999988775433332 2333 45
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
|++-++.-.+ ..+-+.|-||.|..+..
T Consensus 102 WLeei~~ncd-sv~~vLVGNK~d~~~Rr 128 (198)
T KOG0079|consen 102 WLEEIRNNCD-SVPKVLVGNKNDDPERR 128 (198)
T ss_pred HHHHHHhcCc-cccceecccCCCCccce
Confidence 6655555444 57788999999987654
No 277
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.31 E-value=3.1e-06 Score=90.55 Aligned_cols=80 Identities=23% Similarity=0.255 Sum_probs=49.1
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHH-hhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRS-YVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~-yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
.++.||||||.... ....+.++..- ...+++.++| |+++.. -+++...++.+...-..+-+|+||+|
T Consensus 183 ~DvViIDTaGr~~~--------d~~lm~El~~i~~~~~p~e~lL-Vlda~~---Gq~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 183 FDIIIVDTSGRHKQ--------EDSLFEEMLQVAEAIQPDNIIF-VMDGSI---GQAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred CCEEEEECCCCCcc--------hHHHHHHHHHHhhhcCCcEEEE-Eecccc---ChhHHHHHHHHHhccCCcEEEEECcc
Confidence 68999999995432 12233333221 1235776666 555543 24445566666554567889999999
Q ss_pred ccCccccHHHHHh
Q 006928 215 LMDKGTNALEVLE 227 (625)
Q Consensus 215 ~~~~~~~~~~~l~ 227 (625)
....+..++.+..
T Consensus 251 ~~argG~aLs~~~ 263 (429)
T TIGR01425 251 GHAKGGGALSAVA 263 (429)
T ss_pred CCCCccHHhhhHH
Confidence 9888776655543
No 278
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.31 E-value=7.7e-06 Score=78.52 Aligned_cols=150 Identities=18% Similarity=0.297 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccc-----cccccEEEEEeecCC
Q 006928 8 IGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-----VTRRPLVLQLHQTEG 82 (625)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~-----~Tr~p~~~~l~~~~~ 82 (625)
-.+++++..-.-..|.+ . .|.|||..+.||||++|.|+...+ -++++. .++..+++...+.
T Consensus 30 dtI~~Qm~~k~mk~GF~----------F-NIMVVgqSglgkstlinTlf~s~v-~~~s~~~~~~~p~pkT~eik~~th-- 95 (336)
T KOG1547|consen 30 DTIIEQMRKKTMKTGFD----------F-NIMVVGQSGLGKSTLINTLFKSHV-SDSSSSDNSAEPIPKTTEIKSITH-- 95 (336)
T ss_pred HHHHHHHHHHHHhccCc----------e-EEEEEecCCCCchhhHHHHHHHHH-hhccCCCcccCcccceEEEEeeee--
Confidence 34455555555556543 2 599999999999999999987654 222221 2222233321100
Q ss_pred CCcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCC-CccHHHH
Q 006928 83 GTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQ-PESIVED 161 (625)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q-~~~~~~~ 161 (625)
.+-.+-+. ..|++|||||+.+.-.++. =+-+.+.
T Consensus 96 -------------------------------------vieE~gVk--------lkltviDTPGfGDqInN~ncWePI~ky 130 (336)
T KOG1547|consen 96 -------------------------------------VIEEKGVK--------LKLTVIDTPGFGDQINNDNCWEPIEKY 130 (336)
T ss_pred -------------------------------------eeeecceE--------EEEEEecCCCcccccCccchhHHHHHH
Confidence 01111122 3689999999987544321 1235555
Q ss_pred HHHHHHHhhc--------------CCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 162 IENMVRSYVE--------------KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 162 i~~~v~~yi~--------------~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
|.+.-.+|++ +.+|++.++-|....+..-|.. +++.+.. -..++-||-|.|.+.-
T Consensus 131 IneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDie-flkrLt~-vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 131 INEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIE-FLKRLTE-VVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHH-HHHHHhh-hheeeeeEeecccccH
Confidence 5555555553 3567777666666555554443 4444433 3678899999998753
No 279
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.28 E-value=1.2e-05 Score=84.36 Aligned_cols=150 Identities=21% Similarity=0.264 Sum_probs=83.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCC--------CcceeeccCCCCccCChHHHHHHH
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRKKFTDFAAVRKEI 107 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i 107 (625)
..|++||..|+||||++..|.+. +...+. ... +..++.. ..|+.....+-....+...+.+.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~~Gk-----kVg---lI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL 312 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHGKKK-----TVG---FITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL 312 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHHcCC-----cEE---EEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHH
Confidence 47899999999999999999864 321110 111 1122111 122222222211123444444444
Q ss_pred HHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCCC
Q 006928 108 SDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQ 185 (625)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi--~~~~~iIl~v~~a~~ 185 (625)
...... ...++.||||||..... ...+.++ .+++ ..++.++| |++++
T Consensus 313 ~~lk~~--------------------~~~DvVLIDTaGRs~kd--------~~lm~EL-~~~lk~~~PdevlL-VLsAT- 361 (436)
T PRK11889 313 TYFKEE--------------------ARVDYILIDTAGKNYRA--------SETVEEM-IETMGQVEPDYICL-TLSAS- 361 (436)
T ss_pred HHHHhc--------------------cCCCEEEEeCccccCcC--------HHHHHHH-HHHHhhcCCCeEEE-EECCc-
Confidence 332110 12689999999965421 2233333 2333 24665555 45654
Q ss_pred ccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHh
Q 006928 186 DIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLE 227 (625)
Q Consensus 186 d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (625)
....+....++.+... ...=+|+||+|....+..+.++..
T Consensus 362 -tk~~d~~~i~~~F~~~-~idglI~TKLDET~k~G~iLni~~ 401 (436)
T PRK11889 362 -MKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPA 401 (436)
T ss_pred -cChHHHHHHHHHhcCC-CCCEEEEEcccCCCCccHHHHHHH
Confidence 3345666677777763 456688999999998887777765
No 280
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=6e-06 Score=76.36 Aligned_cols=120 Identities=19% Similarity=0.290 Sum_probs=77.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
+-.++++|+.++|||+||-..++..|-|.-. +.+-+ +|+
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd-------~TiGv-------efg--------------------------- 44 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-------LTIGV-------EFG--------------------------- 44 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc-------ceeee-------eec---------------------------
Confidence 4578999999999999999999999844322 11110 000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc--cHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA--TSDA 192 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~--~~~~ 192 (625)
.+...+..++ ..|.++||.| .+.+++++.+|.+.+-..+|+..-.+.+-- ...|
T Consensus 45 -~r~~~id~k~----------IKlqiwDtaG-------------qe~frsv~~syYr~a~GalLVydit~r~sF~hL~~w 100 (216)
T KOG0098|consen 45 -ARMVTIDGKQ----------IKLQIWDTAG-------------QESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSW 100 (216)
T ss_pred -eeEEEEcCce----------EEEEEEecCC-------------cHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHH
Confidence 0001122222 3477999999 567799999999998887876543332211 2334
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+.=+++......-++++-||+|+....
T Consensus 101 L~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 101 LEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred HHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 544555544456677888999998764
No 281
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.26 E-value=1.6e-06 Score=79.40 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=22.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
.++++|.+|+|||||+|+|.|..+
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 899999999999999999999875
No 282
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=1.6e-06 Score=80.46 Aligned_cols=151 Identities=15% Similarity=0.248 Sum_probs=92.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
-+|+++|--||||||+|..|--.++ +|-.||
T Consensus 18 ~~IlmlGLD~AGKTTILykLk~~E~-------vttvPT------------------------------------------ 48 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLKLGEI-------VTTVPT------------------------------------------ 48 (181)
T ss_pred EEEEEEeccCCCceeeeEeeccCCc-------ccCCCc------------------------------------------
Confidence 3899999999999999999875543 333551
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DA 192 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~~ 192 (625)
.||.-+.+.. . ...++++|.-|-. .++.+...|.++.+.+|++|+++..+.-.. +.
T Consensus 49 ---iGfnVE~v~y----k-n~~f~vWDvGGq~-------------k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL 107 (181)
T KOG0070|consen 49 ---IGFNVETVEY----K-NISFTVWDVGGQE-------------KLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEEL 107 (181)
T ss_pred ---cccceeEEEE----c-ceEEEEEecCCCc-------------ccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHH
Confidence 1222222222 1 4679999998832 336778999999999988776665422111 11
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccc--cHHHHHhCcccccCCCeE--EEEeCChhhhhccCCHHHH
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDKGT--NALEVLEGRSYRLQHPWV--GIVNRSQADINKNVDMIAA 257 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~--~v~~~s~~~~~~~~~~~~~ 257 (625)
..+....+..+.++++..||.|+...-+ ++.+.+.-....- ..|+ +....+..++.++++++..
T Consensus 108 ~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~-~~w~iq~~~a~~G~GL~egl~wl~~ 175 (181)
T KOG0070|consen 108 HRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS-RNWHIQSTCAISGEGLYEGLDWLSN 175 (181)
T ss_pred HHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC-CCcEEeeccccccccHHHHHHHHHH
Confidence 2233333445788999999999876543 3344443322322 4554 3445555666555555443
No 283
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.24 E-value=1.5e-06 Score=80.08 Aligned_cols=119 Identities=18% Similarity=0.298 Sum_probs=76.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.|-.|++.|+.|+|||||+|.++..+|.- +. ..
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~-------------qy----------------------------------ka 40 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQ-------------QY----------------------------------KA 40 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHH-------------Hh----------------------------------cc
Confidence 56789999999999999999999888710 00 00
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC--ccccHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ--DIATSD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~--d~~~~~ 191 (625)
..| ..|-.+.+.+ . .....|.|+||.| ++.++.+-..|.+.+||.+|+. +.+. .+.+-+
T Consensus 41 TIg--adFltKev~V--d-~~~vtlQiWDTAG-------------QERFqsLg~aFYRgaDcCvlvy-dv~~~~Sfe~L~ 101 (210)
T KOG0394|consen 41 TIG--ADFLTKEVQV--D-DRSVTLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVY-DVNNPKSFENLE 101 (210)
T ss_pred ccc--hhheeeEEEE--c-CeEEEEEEEeccc-------------HHHhhhcccceecCCceEEEEe-ecCChhhhccHH
Confidence 011 1122222222 1 2335689999999 5666777777889999988753 3332 233322
Q ss_pred H-H-HHHHHhC---CCCCceEEEeccCcccCc
Q 006928 192 A-I-KLAREVD---PTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~-l-~l~~~~d---~~~~rti~VltK~D~~~~ 218 (625)
. . +++.+.+ |..=|.|++-||+|+-..
T Consensus 102 ~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~ 133 (210)
T KOG0394|consen 102 NWRKEFLIQASPQDPETFPFVILGNKIDVDGG 133 (210)
T ss_pred HHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence 1 1 2455554 556789999999998653
No 284
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.23 E-value=3.6e-06 Score=86.17 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=25.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCccccc
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~ 64 (625)
..+++|||.+|+|||||+|+|+|....+++
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~ 147 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVG 147 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccC
Confidence 457999999999999999999998754443
No 285
>PRK12740 elongation factor G; Reviewed
Probab=98.23 E-value=4.7e-06 Score=96.17 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=47.6
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
...++||||||..+ +...+..++..+|++++++. ++.+...+. ..+.+.+...+.|.++|+||+|
T Consensus 59 ~~~i~liDtPG~~~-------------~~~~~~~~l~~aD~vllvvd-~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~D 123 (668)
T PRK12740 59 GHKINLIDTPGHVD-------------FTGEVERALRVLDGAVVVVC-AVGGVEPQT-ETVWRQAEKYGVPRIIFVNKMD 123 (668)
T ss_pred CEEEEEEECCCcHH-------------HHHHHHHHHHHhCeEEEEEe-CCCCcCHHH-HHHHHHHHHcCCCEEEEEECCC
Confidence 46899999999642 13446678889998777554 544443332 2344555556889999999999
Q ss_pred ccCc
Q 006928 215 LMDK 218 (625)
Q Consensus 215 ~~~~ 218 (625)
+...
T Consensus 124 ~~~~ 127 (668)
T PRK12740 124 RAGA 127 (668)
T ss_pred CCCC
Confidence 8754
No 286
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.22 E-value=6.9e-06 Score=89.63 Aligned_cols=65 Identities=25% Similarity=0.283 Sum_probs=41.1
Q ss_pred CCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc---------ccHHHHHHHHHhCCCCC
Q 006928 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---------ATSDAIKLAREVDPTGE 204 (625)
Q Consensus 134 ~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~---------~~~~~l~l~~~~d~~~~ 204 (625)
+...++||||||- .+.+.++ ...+..+|.+||+| ++..+. .+.+.+.++ ...|.
T Consensus 83 ~~~~i~lIDtPGh------------~~f~~~~-~~g~~~aD~ailVV-da~~G~~e~~~~~~~qT~eh~~~~---~~~gi 145 (446)
T PTZ00141 83 PKYYFTIIDAPGH------------RDFIKNM-ITGTSQADVAILVV-ASTAGEFEAGISKDGQTREHALLA---FTLGV 145 (446)
T ss_pred CCeEEEEEECCCh------------HHHHHHH-HHhhhhcCEEEEEE-EcCCCceecccCCCccHHHHHHHH---HHcCC
Confidence 4568999999992 2334444 34467899888755 454433 233344344 44466
Q ss_pred c-eEEEeccCcc
Q 006928 205 R-TFGVLTKLDL 215 (625)
Q Consensus 205 r-ti~VltK~D~ 215 (625)
+ .|+++||+|.
T Consensus 146 ~~iiv~vNKmD~ 157 (446)
T PTZ00141 146 KQMIVCINKMDD 157 (446)
T ss_pred CeEEEEEEcccc
Confidence 5 6789999994
No 287
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.22 E-value=6.6e-06 Score=89.72 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=42.0
Q ss_pred CCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc-----HHHHHHHHHhCCCCCc-eE
Q 006928 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT-----SDAIKLAREVDPTGER-TF 207 (625)
Q Consensus 134 ~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~-----~~~l~l~~~~d~~~~r-ti 207 (625)
....++|+|||| ..+.+.++ ..++..+|+.||+|......+.. ....+.+..+...|.+ .|
T Consensus 83 ~~~~i~liDtPG------------h~df~~~~-~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iI 149 (447)
T PLN00043 83 TKYYCTVIDAPG------------HRDFIKNM-ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149 (447)
T ss_pred CCEEEEEEECCC------------HHHHHHHH-HhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEE
Confidence 446899999999 23334444 56678999988866544321210 1112222333334664 68
Q ss_pred EEeccCccc
Q 006928 208 GVLTKLDLM 216 (625)
Q Consensus 208 ~VltK~D~~ 216 (625)
+++||+|+.
T Consensus 150 V~vNKmD~~ 158 (447)
T PLN00043 150 CCCNKMDAT 158 (447)
T ss_pred EEEEcccCC
Confidence 889999987
No 288
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.20 E-value=1.6e-06 Score=83.94 Aligned_cols=81 Identities=21% Similarity=0.212 Sum_probs=43.2
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
.++.||||||..... .+..+.++++. ..+ .++-++| |++++... .+...+.+..+. ...+=+|+||.|.
T Consensus 84 ~D~vlIDT~Gr~~~d-----~~~~~el~~~~-~~~-~~~~~~L-Vlsa~~~~--~~~~~~~~~~~~-~~~~~lIlTKlDe 152 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRD-----EELLEELKKLL-EAL-NPDEVHL-VLSATMGQ--EDLEQALAFYEA-FGIDGLILTKLDE 152 (196)
T ss_dssp SSEEEEEE-SSSSTH-----HHHHHHHHHHH-HHH-SSSEEEE-EEEGGGGG--HHHHHHHHHHHH-SSTCEEEEESTTS
T ss_pred CCEEEEecCCcchhh-----HHHHHHHHHHh-hhc-CCccceE-EEecccCh--HHHHHHHHHhhc-ccCceEEEEeecC
Confidence 689999999966421 11222333332 222 4555555 55665432 222222222222 2345677999999
Q ss_pred cCccccHHHHHh
Q 006928 216 MDKGTNALEVLE 227 (625)
Q Consensus 216 ~~~~~~~~~~l~ 227 (625)
......+.+++.
T Consensus 153 t~~~G~~l~~~~ 164 (196)
T PF00448_consen 153 TARLGALLSLAY 164 (196)
T ss_dssp SSTTHHHHHHHH
T ss_pred CCCcccceeHHH
Confidence 888777776654
No 289
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.16 E-value=4.6e-06 Score=87.38 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=61.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCc-ccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~-lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
..+.+||.||+|||||+|+|++... -+.....||-.|..-.+ ..+ +.+ ++.+ . .+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v-~v~------------d~r---~d~L----~----~~ 58 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVV-NPS------------DPR---LDLL----A----IY 58 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEE-Eec------------hhH---HHHH----H----HH
Confidence 3689999999999999999999974 33344667777743221 110 100 0000 0 00
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEe
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAIS 181 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~ 181 (625)
... ... ....+.++|.||++..+..+.. ..+-..+.++++|+++++|.
T Consensus 59 ~~~------------~~~-~~a~i~~~DiaGlv~gAs~g~G------lgn~fL~~ir~~d~l~hVvr 106 (368)
T TIGR00092 59 IKP------------EKV-PPTTTEFVDIAGLVGGASKGEG------LGNQFLANIREVDIIQHVVR 106 (368)
T ss_pred hCC------------cCc-CCceEEEEeccccccchhcccC------cchHHHHHHHhCCEEEEEEe
Confidence 000 000 1135799999999987765321 23446677889998777553
No 290
>PRK13768 GTPase; Provisional
Probab=98.14 E-value=1.4e-05 Score=80.72 Aligned_cols=76 Identities=21% Similarity=0.285 Sum_probs=41.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcC--CCEEEEEEecCCCccccHH-----HHHHHHHhCCCCCceEE
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK--PSCIILAISPANQDIATSD-----AIKLAREVDPTGERTFG 208 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~--~~~iIl~v~~a~~d~~~~~-----~l~l~~~~d~~~~rti~ 208 (625)
.++.+||+||..+.... ......+ .+++.. ++++++ |+++.......+ .+.+..+. ..+.+.+.
T Consensus 97 ~~~~~~d~~g~~~~~~~------~~~~~~~-~~~l~~~~~~~ii~-liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~ 167 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF------RESGRKL-VERLSGSSKSVVVF-LIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIP 167 (253)
T ss_pred CCEEEEeCCcHHHHHhh------hHHHHHH-HHHHHhcCCeEEEE-EechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEE
Confidence 48999999997654321 1111222 233333 666555 555543222222 12122222 34789999
Q ss_pred EeccCcccCccc
Q 006928 209 VLTKLDLMDKGT 220 (625)
Q Consensus 209 VltK~D~~~~~~ 220 (625)
|+||+|+.+..+
T Consensus 168 v~nK~D~~~~~~ 179 (253)
T PRK13768 168 VLNKADLLSEEE 179 (253)
T ss_pred EEEhHhhcCchh
Confidence 999999987643
No 291
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.14 E-value=5.4e-06 Score=85.39 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=24.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccc
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPR 63 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~ 63 (625)
-.+++|||.+|+|||||+|+|.|.....+
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~ 149 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKT 149 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcccc
Confidence 35799999999999999999999875333
No 292
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.13 E-value=9.8e-06 Score=76.80 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
.+.++++|.+|+|||||+|+|.+..+
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~ 140 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKV 140 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 46899999999999999999999876
No 293
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.13 E-value=9e-06 Score=87.47 Aligned_cols=119 Identities=21% Similarity=0.287 Sum_probs=78.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
--+||+||+.|+|||||+=+|++..|.| .++-|.|-.. +
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~---~VP~rl~~i~--------------------------------------I 47 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVD---AVPRRLPRIL--------------------------------------I 47 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccc---cccccCCccc--------------------------------------c
Confidence 3489999999999999999999998733 2333443111 1
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecC----CCccccH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPA----NQDIATS 190 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a----~~d~~~~ 190 (625)
.. =..|+..+.++||++--.. . +..+.+-++++|.|.++ -+. +.|--..
T Consensus 48 Pa-------------dvtPe~vpt~ivD~ss~~~---~----------~~~l~~EirkA~vi~lv-yavd~~~T~D~ist 100 (625)
T KOG1707|consen 48 PA-------------DVTPENVPTSIVDTSSDSD---D----------RLCLRKEIRKADVICLV-YAVDDESTVDRIST 100 (625)
T ss_pred CC-------------ccCcCcCceEEEecccccc---h----------hHHHHHHHhhcCEEEEE-EecCChHHhhhhhh
Confidence 00 1234455689999983111 0 33446667889965543 323 3355556
Q ss_pred HHHHHHHHhC--CCCCceEEEeccCcccCcccc
Q 006928 191 DAIKLAREVD--PTGERTFGVLTKLDLMDKGTN 221 (625)
Q Consensus 191 ~~l~l~~~~d--~~~~rti~VltK~D~~~~~~~ 221 (625)
.|+-+.++.. ....|+|+|-||.|..+....
T Consensus 101 ~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 101 KWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred hhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 6787888775 346899999999999876543
No 294
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.11 E-value=9.2e-06 Score=80.45 Aligned_cols=32 Identities=34% Similarity=0.426 Sum_probs=26.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC--Cccccccc
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR--DFLPRGSG 66 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~--~~lP~~~~ 66 (625)
+.-.|+|+|.+++|||+|||.|+|. . |+.+.+
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~-f~~~~~ 39 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSG-FDVMDT 39 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCC-eEecCC
Confidence 3457999999999999999999998 5 465544
No 295
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=1.2e-05 Score=76.03 Aligned_cols=118 Identities=17% Similarity=0.247 Sum_probs=77.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
-+-.||++|++++|||=||.+.+.-.| .+-++-++-+.+.+- +..
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF-----~~~SksTIGvef~t~------------------------------t~~ 57 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEF-----SLESKSTIGVEFATR------------------------------TVN 57 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhccccc-----CcccccceeEEEEee------------------------------cee
Confidence 466799999999999999999998888 444444433322111 000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc---cH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA---TS 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~---~~ 190 (625)
+ .. ......||||.| ++..+.++-.|.+.+...+|+.+ .+...+ ..
T Consensus 58 v-------d~----------k~vkaqIWDTAG-------------QERyrAitSaYYrgAvGAllVYD-ITr~~Tfenv~ 106 (222)
T KOG0087|consen 58 V-------DG----------KTVKAQIWDTAG-------------QERYRAITSAYYRGAVGALLVYD-ITRRQTFENVE 106 (222)
T ss_pred e-------cC----------cEEEEeeecccc-------------hhhhccccchhhcccceeEEEEe-chhHHHHHHHH
Confidence 1 11 123568999999 56667888899999998777543 322221 23
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccC
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~ 217 (625)
.|+.-++.......++++|-||+|+..
T Consensus 107 rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 107 RWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred HHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 455444544445688999999999876
No 296
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.10 E-value=4.9e-06 Score=86.86 Aligned_cols=31 Identities=32% Similarity=0.620 Sum_probs=27.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 72 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p 72 (625)
.+.|||-||+|||||||+|+|... ..+.++|
T Consensus 134 ~v~vvG~PNVGKSslIN~L~~k~~-----~~~s~~P 164 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLLGKKV-----AKTSNRP 164 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHhcccc-----eeeCCCC
Confidence 699999999999999999999976 5566677
No 297
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.10 E-value=4.7e-06 Score=84.09 Aligned_cols=101 Identities=24% Similarity=0.341 Sum_probs=66.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+-+.|.+||-||+||||++|+|+....-|.....||--|.+-+. ..++.+| +.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V-------------~v~d~Rf--------------d~ 71 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARV-------------EVPDSRF--------------DL 71 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceecccccee-------------ecCchHH--------------HH
Confidence 45589999999999999999999987645555567777743321 0111111 11
Q ss_pred hhCCCCccccccEEEEEecCCC---CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEE
Q 006928 114 ITGKSKQISNIPIQLSIYSPNV---VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAI 180 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~---~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v 180 (625)
+.. +++|.. ..|+++|..|+++.+..|+. .-+-..+-|+++|+|+-+|
T Consensus 72 l~~-------------~Y~~~~~vpa~l~v~DIAGLvkGAs~G~G------LGN~FLs~iR~vDaifhVV 122 (391)
T KOG1491|consen 72 LCP-------------IYGPKSKVPAFLTVYDIAGLVKGASAGEG------LGNKFLSHIRHVDAIFHVV 122 (391)
T ss_pred HHH-------------hcCCcceeeeeEEEEeecccccCcccCcC------chHHHHHhhhhccceeEEE
Confidence 111 233321 37899999999998877533 2455677788999987755
No 298
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.10 E-value=2.9e-05 Score=78.61 Aligned_cols=151 Identities=21% Similarity=0.265 Sum_probs=82.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCC--------CcceeeccCCCCccCChHHHHHH
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRKKFTDFAAVRKE 106 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 106 (625)
.+.|+++|.+++||||++..|.+. +...+. .. -+...+.. ..|+....-+-....+...+.+.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~-l~~~~~-----~v---~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~ 145 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ-FHGKKK-----TV---GFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRA 145 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH-HHHcCC-----eE---EEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHH
Confidence 479999999999999999999876 211110 01 11112111 11111111111111233344433
Q ss_pred HHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCC
Q 006928 107 ISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPAN 184 (625)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi--~~~~~iIl~v~~a~ 184 (625)
+.... .. ...++.||||||-.... ...++++. .++ .+++-++| |++++
T Consensus 146 l~~l~-~~-------------------~~~D~ViIDt~Gr~~~~--------~~~l~el~-~~~~~~~~~~~~L-Vl~a~ 195 (270)
T PRK06731 146 LTYFK-EE-------------------ARVDYILIDTAGKNYRA--------SETVEEMI-ETMGQVEPDYICL-TLSAS 195 (270)
T ss_pred HHHHH-hc-------------------CCCCEEEEECCCCCcCC--------HHHHHHHH-HHHhhhCCCeEEE-EEcCc
Confidence 33211 11 12689999999965321 22333332 222 24565555 55655
Q ss_pred CccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHh
Q 006928 185 QDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLE 227 (625)
Q Consensus 185 ~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (625)
...+++...++.+.. -...=+|+||.|....+..+.++..
T Consensus 196 --~~~~d~~~~~~~f~~-~~~~~~I~TKlDet~~~G~~l~~~~ 235 (270)
T PRK06731 196 --MKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPA 235 (270)
T ss_pred --cCHHHHHHHHHHhCC-CCCCEEEEEeecCCCCccHHHHHHH
Confidence 234566677787776 3456678999999988877777654
No 299
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=3.6e-05 Score=80.55 Aligned_cols=150 Identities=18% Similarity=0.241 Sum_probs=82.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCC--------CcceeeccCCCCccCChHHHHHHH
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRKKFTDFAAVRKEI 107 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i 107 (625)
..|+++|++|+||||++..|... +...+ ..+. +...+.. ..|+..+..|-....+..++.+.+
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~-l~~~g-----~~V~---lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al 277 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQ-LLKQN-----RTVG---FITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAV 277 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHcC-----CeEE---EEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHH
Confidence 35789999999999999999854 32222 1111 1122211 122332222222224555554444
Q ss_pred HHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCC
Q 006928 108 SDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQ 185 (625)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~--~~~~iIl~v~~a~~ 185 (625)
..... . ...++.||||||.... ..+.+.++ ..+.. .++.++| |.+++
T Consensus 278 ~~l~~-~-------------------~~~D~VLIDTAGr~~~--------d~~~l~EL-~~l~~~~~p~~~~L-VLsag- 326 (407)
T PRK12726 278 QYMTY-V-------------------NCVDHILIDTVGRNYL--------AEESVSEI-SAYTDVVHPDLTCF-TFSSG- 326 (407)
T ss_pred HHHHh-c-------------------CCCCEEEEECCCCCcc--------CHHHHHHH-HHHhhccCCceEEE-ECCCc-
Confidence 33211 0 1268999999996542 12333333 22332 4564444 55554
Q ss_pred ccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHh
Q 006928 186 DIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLE 227 (625)
Q Consensus 186 d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (625)
....+...+++.+... ...-+|+||.|....+..+.++..
T Consensus 327 -~~~~d~~~i~~~f~~l-~i~glI~TKLDET~~~G~~Lsv~~ 366 (407)
T PRK12726 327 -MKSADVMTILPKLAEI-PIDGFIITKMDETTRIGDLYTVMQ 366 (407)
T ss_pred -ccHHHHHHHHHhcCcC-CCCEEEEEcccCCCCccHHHHHHH
Confidence 3344555566665543 355677999999988877777654
No 300
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.09 E-value=4.1e-06 Score=80.86 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~ 59 (625)
-+|++||-||+||||||..|++..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~ 86 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH 86 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch
Confidence 489999999999999999999764
No 301
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.09 E-value=9.9e-06 Score=78.35 Aligned_cols=140 Identities=16% Similarity=0.184 Sum_probs=80.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
...|+|+|..|+|||+|.-..++..|.+. .-| +.+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~------y~p------tie--------------------------------- 37 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED------YDP------TIE--------------------------------- 37 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc------cCC------Ccc---------------------------------
Confidence 45799999999999999999998876321 111 000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
.+-..++. +. .....|.|+||+|-.. ...|-..|+...|..+++. +.+..-+-.++..
T Consensus 38 -----d~y~k~~~--v~-~~~~~l~ilDt~g~~~-------------~~~~~~~~~~~~~gF~lVy-sitd~~SF~~~~~ 95 (196)
T KOG0395|consen 38 -----DSYRKELT--VD-GEVCMLEILDTAGQEE-------------FSAMRDLYIRNGDGFLLVY-SITDRSSFEEAKQ 95 (196)
T ss_pred -----ccceEEEE--EC-CEEEEEEEEcCCCccc-------------ChHHHHHhhccCcEEEEEE-ECCCHHHHHHHHH
Confidence 00011111 22 2335688999999211 1455678999999876644 4333222223322
Q ss_pred HHHH----hCCCCCceEEEeccCcccCcccc----HHHHHhCcccccCCCeEEEEeCCh
Q 006928 195 LARE----VDPTGERTFGVLTKLDLMDKGTN----ALEVLEGRSYRLQHPWVGIVNRSQ 245 (625)
Q Consensus 195 l~~~----~d~~~~rti~VltK~D~~~~~~~----~~~~l~~~~~~l~~g~~~v~~~s~ 245 (625)
+..+ .+....|++.|.||+|+...... ...+ ....+.+|..+.....
T Consensus 96 l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l----a~~~~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 96 LREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL----ARSWGCAFIETSAKLN 150 (196)
T ss_pred HHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH----HHhcCCcEEEeeccCC
Confidence 2222 24445699999999999864321 1122 2334456776655443
No 302
>PRK12289 GTPase RsgA; Reviewed
Probab=98.08 E-value=6.4e-06 Score=86.65 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
.++|+|.+|+|||||||+|.|...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 489999999999999999998754
No 303
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.07 E-value=2.5e-05 Score=76.63 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=81.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCC------------CCcceeec----cCCCC-c
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEG------------GTDYAEFL----HAPRK-K 96 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~------------~~~~~~~~----~~~~~-~ 96 (625)
..+-|+|||-.||||+|++..|.+.-. ... | .|-+++|...-. ...|.+.+ -.|+- .
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~--~~~---~-ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI 91 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH--AKK---T-PPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGI 91 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh--hcc---C-CCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcch
Confidence 466799999999999999999987521 110 1 154555422100 01222211 12221 1
Q ss_pred c-------CChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHh
Q 006928 97 F-------TDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSY 169 (625)
Q Consensus 97 ~-------~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~y 169 (625)
. +.|+++...|++..+ ..+..+|||||=+..-.-.-+- .-++..+
T Consensus 92 ~TsLNLF~tk~dqv~~~iek~~~----------------------~~~~~liDTPGQIE~FtWSAsG------sIIte~l 143 (366)
T KOG1532|consen 92 VTSLNLFATKFDQVIELIEKRAE----------------------EFDYVLIDTPGQIEAFTWSASG------SIITETL 143 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhc----------------------ccCEEEEcCCCceEEEEecCCc------cchHhhH
Confidence 1 245555555444322 2468999999966533221111 1122333
Q ss_pred hcCCCEEEEEEecCCCcccc----HHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 170 VEKPSCIILAISPANQDIAT----SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 170 i~~~~~iIl~v~~a~~d~~~----~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
..--.+||..|++....-.. +..+....-+-....|+|+|+||.|+.+.+
T Consensus 144 ass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~ 197 (366)
T KOG1532|consen 144 ASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSE 197 (366)
T ss_pred hhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccH
Confidence 33344556556554322111 223333344456789999999999999875
No 304
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.07 E-value=9.8e-06 Score=81.38 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
..++++|.+|+|||||||+|.|...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 4799999999999999999998754
No 305
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=2.7e-05 Score=88.62 Aligned_cols=151 Identities=21% Similarity=0.264 Sum_probs=82.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCC--------CcceeeccCCCCccCChHHHHHHHH
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRKKFTDFAAVRKEIS 108 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~ 108 (625)
.|++||.+|+||||++..|.+.- .+.... ... -+..++.. +.|+.....+.....+..++.+.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~---kkV---~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~ 259 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARC-VAREGA---DQL---ALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA 259 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhH-HHHcCC---CeE---EEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH
Confidence 57899999999999999999863 122110 011 11122111 3344444444443445555544443
Q ss_pred HHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc
Q 006928 109 DETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA 188 (625)
Q Consensus 109 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~ 188 (625)
+ .. ..+++||||||....... +.+.+..+. . ...++-++| |++++. .
T Consensus 260 ~----~~-------------------~~D~VLIDTAGRs~~d~~-----l~eel~~l~-~-~~~p~e~~L-VLsAt~--~ 306 (767)
T PRK14723 260 A----LG-------------------DKHLVLIDTVGMSQRDRN-----VSEQIAMLC-G-VGRPVRRLL-LLNAAS--H 306 (767)
T ss_pred H----hc-------------------CCCEEEEeCCCCCccCHH-----HHHHHHHHh-c-cCCCCeEEE-EECCCC--c
Confidence 2 11 247999999996643211 222222221 1 234554555 556652 2
Q ss_pred cHHHHHHHHHhCCCC--CceEEEeccCcccCccccHHHHHh
Q 006928 189 TSDAIKLAREVDPTG--ERTFGVLTKLDLMDKGTNALEVLE 227 (625)
Q Consensus 189 ~~~~l~l~~~~d~~~--~rti~VltK~D~~~~~~~~~~~l~ 227 (625)
..+..++++.+.... ..+=+|+||.|....+..+.+++.
T Consensus 307 ~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~ 347 (767)
T PRK14723 307 GDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVI 347 (767)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHH
Confidence 233334555554321 356688999999998887777765
No 306
>PRK14974 cell division protein FtsY; Provisional
Probab=98.06 E-value=7.8e-06 Score=85.32 Aligned_cols=81 Identities=30% Similarity=0.454 Sum_probs=50.3
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
.++.||||||...... .....++.+.. .-++|.++| |.++.. .+++...++.....-...-+|+||+|.
T Consensus 223 ~DvVLIDTaGr~~~~~-----~lm~eL~~i~~--~~~pd~~iL-Vl~a~~---g~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTDA-----NLMDELKKIVR--VTKPDLVIF-VGDALA---GNDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCcH-----HHHHHHHHHHH--hhCCceEEE-eecccc---chhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 5799999999765321 12233333321 235776665 555543 345555566555434457889999999
Q ss_pred cCccccHHHHHh
Q 006928 216 MDKGTNALEVLE 227 (625)
Q Consensus 216 ~~~~~~~~~~l~ 227 (625)
...+..+.++..
T Consensus 292 ~~~~G~~ls~~~ 303 (336)
T PRK14974 292 DAKGGAALSIAY 303 (336)
T ss_pred CCCccHHHHHHH
Confidence 988877666654
No 307
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=1.9e-05 Score=83.31 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|++|+||||++..|.+.
T Consensus 139 ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999975
No 308
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=2e-05 Score=74.74 Aligned_cols=71 Identities=23% Similarity=0.371 Sum_probs=46.2
Q ss_pred CcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc---CCCEEEEEEecCCCccccHHHHHHHHH------hCCCCCceE
Q 006928 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE---KPSCIILAISPANQDIATSDAIKLARE------VDPTGERTF 207 (625)
Q Consensus 137 ~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~---~~~~iIl~v~~a~~d~~~~~~l~l~~~------~d~~~~rti 207 (625)
.+++||.||-.+ .+.-...|+. .+-.||++|+++..+-...++.+++-. ....+.+.+
T Consensus 83 ~~~LVD~PGH~r-------------lR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vL 149 (238)
T KOG0090|consen 83 NVTLVDLPGHSR-------------LRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVL 149 (238)
T ss_pred ceEEEeCCCcHH-------------HHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEE
Confidence 489999999443 2444555665 677888888877654444444332211 134567899
Q ss_pred EEeccCcccCccc
Q 006928 208 GVLTKLDLMDKGT 220 (625)
Q Consensus 208 ~VltK~D~~~~~~ 220 (625)
+..||-|+....+
T Consensus 150 IaCNKqDl~tAkt 162 (238)
T KOG0090|consen 150 IACNKQDLFTAKT 162 (238)
T ss_pred EEecchhhhhcCc
Confidence 9999999986654
No 309
>PRK12288 GTPase RsgA; Reviewed
Probab=98.02 E-value=1.6e-05 Score=83.70 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
.++++|.+|+|||||||+|+|...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc
Confidence 489999999999999999999764
No 310
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.01 E-value=4.2e-05 Score=79.59 Aligned_cols=84 Identities=20% Similarity=0.320 Sum_probs=47.9
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHH---HHHhh-cCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEe
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENM---VRSYV-EKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVL 210 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~---v~~yi-~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~Vl 210 (625)
..++.||||||....... ..+.++.+ +...+ ..++-.+| |++++. .++++.-++.....-..+-+|+
T Consensus 196 ~~D~ViIDTaGr~~~~~~-----l~~eL~~~~~v~~~~~~~~p~~~~L-Vl~a~~---g~~~~~~a~~f~~~~~~~giIl 266 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTN-----LMEELKKIKRVIKKADPDAPHEVLL-VLDATT---GQNALSQAKAFHEAVGLTGIIL 266 (318)
T ss_pred CCCEEEEeCCCCCcCCHH-----HHHHHHHHHHHHhhhcCCCCceEEE-EEECCC---ChHHHHHHHHHHhhCCCCEEEE
Confidence 368999999997653221 22223322 21222 24565555 556653 2333333444433335677999
Q ss_pred ccCcccCccccHHHHHh
Q 006928 211 TKLDLMDKGTNALEVLE 227 (625)
Q Consensus 211 tK~D~~~~~~~~~~~l~ 227 (625)
||.|....+..+.+++.
T Consensus 267 TKlD~t~~~G~~l~~~~ 283 (318)
T PRK10416 267 TKLDGTAKGGVVFAIAD 283 (318)
T ss_pred ECCCCCCCccHHHHHHH
Confidence 99998888777777654
No 311
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.00 E-value=2.6e-05 Score=72.89 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=21.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
|.++++|..+|||||+++.+.+.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 67899999999999999999876
No 312
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=1.8e-05 Score=89.84 Aligned_cols=136 Identities=15% Similarity=0.225 Sum_probs=88.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+.-.|.++|.--+|||||.++|+-.. |...+ +-++. .+..+.||....
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t------G~i~k-~G~v~----------------~g~~~~D~~e~E--------- 56 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT------GIISK-IGEVH----------------DGAATMDWMEQE--------- 56 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc------CCcCC-Ccccc----------------CCCccCCCcHHH---------
Confidence 45679999999999999999998432 32222 11111 112233433322
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
..++-++....+.+...+ ...++||||||-.+.. .-|.+.++-.|..|+ |+++..+...+...
T Consensus 57 -qeRGITI~saa~s~~~~~--~~~iNlIDTPGHVDFt-------------~EV~rslrvlDgavv-VvdaveGV~~QTEt 119 (697)
T COG0480 57 -QERGITITSAATTLFWKG--DYRINLIDTPGHVDFT-------------IEVERSLRVLDGAVV-VVDAVEGVEPQTET 119 (697)
T ss_pred -HhcCCEEeeeeeEEEEcC--ceEEEEeCCCCccccH-------------HHHHHHHHhhcceEE-EEECCCCeeecHHH
Confidence 122334455556555443 4679999999976543 235666777887666 45666666666544
Q ss_pred HHHHHhCCCCCceEEEeccCcccCcc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+.++++..+.|.++++||+|.+...
T Consensus 120 -v~rqa~~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 120 -VWRQADKYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred -HHHHHhhcCCCeEEEEECccccccC
Confidence 6778888899999999999998653
No 313
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=7.6e-05 Score=80.00 Aligned_cols=151 Identities=17% Similarity=0.202 Sum_probs=79.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCC--------CcceeeccCCCCccCChHHHHHHH
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRKKFTDFAAVRKEI 107 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i 107 (625)
..|++||..|+||||++..|.|...+-.+ +..+.+.+.+.- ..|+..+..+.....+..++...+
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~-------~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al 264 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHG-------ADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLML 264 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcC-------CCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHH
Confidence 47999999999999999999885211000 000111111110 223333333333333333332221
Q ss_pred HHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc
Q 006928 108 SDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI 187 (625)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~ 187 (625)
. .. ...++.+|||+|...... ...+.+..+ .. ...+.-.+| |++++.
T Consensus 265 ~----~l-------------------~~~d~VLIDTaGrsqrd~-----~~~~~l~~l-~~-~~~~~~~~L-Vl~at~-- 311 (420)
T PRK14721 265 H----EL-------------------RGKHMVLIDTVGMSQRDQ-----MLAEQIAML-SQ-CGTQVKHLL-LLNATS-- 311 (420)
T ss_pred H----Hh-------------------cCCCEEEecCCCCCcchH-----HHHHHHHHH-hc-cCCCceEEE-EEcCCC--
Confidence 1 11 236789999999765311 122222222 11 122333455 556652
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHh
Q 006928 188 ATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLE 227 (625)
Q Consensus 188 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (625)
...+..++++.+... ...=+|+||.|.......+.+++.
T Consensus 312 ~~~~~~~~~~~f~~~-~~~~~I~TKlDEt~~~G~~l~~~~ 350 (420)
T PRK14721 312 SGDTLDEVISAYQGH-GIHGCIITKVDEAASLGIALDAVI 350 (420)
T ss_pred CHHHHHHHHHHhcCC-CCCEEEEEeeeCCCCccHHHHHHH
Confidence 234455566666553 456678999999988877777765
No 314
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=3.5e-05 Score=81.86 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEecc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~--~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 212 (625)
..++.||||||....... ..+.+..+. +.+. .+.-.+| |++++. ...+..+.++..... ..+=+|+||
T Consensus 299 ~~D~VLIDTaGr~~rd~~-----~l~eL~~~~-~~~~~~~~~e~~L-VLsAt~--~~~~~~~~~~~f~~~-~~~glIlTK 368 (432)
T PRK12724 299 GSELILIDTAGYSHRNLE-----QLERMQSFY-SCFGEKDSVENLL-VLSSTS--SYHHTLTVLKAYESL-NYRRILLTK 368 (432)
T ss_pred CCCEEEEeCCCCCccCHH-----HHHHHHHHH-HhhcCCCCCeEEE-EEeCCC--CHHHHHHHHHHhcCC-CCCEEEEEc
Confidence 368999999997642211 122222222 2221 2223445 556653 234455566655443 456788999
Q ss_pred CcccCccccHHHHHh
Q 006928 213 LDLMDKGTNALEVLE 227 (625)
Q Consensus 213 ~D~~~~~~~~~~~l~ 227 (625)
.|....+..+.++..
T Consensus 369 LDEt~~~G~il~i~~ 383 (432)
T PRK12724 369 LDEADFLGSFLELAD 383 (432)
T ss_pred ccCCCCccHHHHHHH
Confidence 999988877777754
No 315
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=7.2e-05 Score=77.98 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=50.3
Q ss_pred ccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-------ccc--H
Q 006928 120 QISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-------IAT--S 190 (625)
Q Consensus 120 ~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-------~~~--~ 190 (625)
|++-+.-......+ .+.+||+|+|| . .+.+.+|+.. +.++|+.||+| +|+.+ ... .
T Consensus 70 GvTi~~~~~~fet~-k~~~tIiDaPG-H-----------rdFvknmItG-asqAD~aVLVV-~a~~~efE~g~~~~gQtr 134 (428)
T COG5256 70 GVTIDVAHSKFETD-KYNFTIIDAPG-H-----------RDFVKNMITG-ASQADVAVLVV-DARDGEFEAGFGVGGQTR 134 (428)
T ss_pred ceEEEEEEEEeecC-CceEEEeeCCc-h-----------HHHHHHhhcc-hhhccEEEEEE-ECCCCccccccccCCchh
Confidence 34443333344343 36899999999 2 3444555443 35799888865 45443 222 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+..-+++.+. -...|+++||+|.++-.
T Consensus 135 EH~~La~tlG--i~~lIVavNKMD~v~wd 161 (428)
T COG5256 135 EHAFLARTLG--IKQLIVAVNKMDLVSWD 161 (428)
T ss_pred HHHHHHHhcC--CceEEEEEEcccccccC
Confidence 3333666554 36788999999999743
No 316
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.97 E-value=2.5e-05 Score=77.11 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=20.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
+.+.|.|-|.|++|||||+++|...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999854
No 317
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=7.2e-05 Score=81.51 Aligned_cols=80 Identities=28% Similarity=0.297 Sum_probs=44.7
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
.++.||||||...... ...+.+..+ .... ... .++|++++. ...++...++.+... ...-+|+||+|.
T Consensus 429 ~DLVLIDTaG~s~~D~-----~l~eeL~~L-~aa~-~~a--~lLVLpAts--s~~Dl~eii~~f~~~-~~~gvILTKlDE 496 (559)
T PRK12727 429 YKLVLIDTAGMGQRDR-----ALAAQLNWL-RAAR-QVT--SLLVLPANA--HFSDLDEVVRRFAHA-KPQGVVLTKLDE 496 (559)
T ss_pred CCEEEecCCCcchhhH-----HHHHHHHHH-HHhh-cCC--cEEEEECCC--ChhHHHHHHHHHHhh-CCeEEEEecCcC
Confidence 6899999999764211 112222222 2222 222 233455553 233444455555442 467799999999
Q ss_pred cCccccHHHHHh
Q 006928 216 MDKGTNALEVLE 227 (625)
Q Consensus 216 ~~~~~~~~~~l~ 227 (625)
......+++++.
T Consensus 497 t~~lG~aLsv~~ 508 (559)
T PRK12727 497 TGRFGSALSVVV 508 (559)
T ss_pred ccchhHHHHHHH
Confidence 877776777665
No 318
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.96 E-value=6.5e-05 Score=81.32 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=47.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
.++.||||||...... ...+.+..++.. ...+..++| |++++. ...+..++++.+...+ ..-+|+||+|.
T Consensus 300 ~DlVlIDt~G~~~~d~-----~~~~~L~~ll~~-~~~~~~~~L-Vl~a~~--~~~~l~~~~~~f~~~~-~~~vI~TKlDe 369 (424)
T PRK05703 300 CDVILIDTAGRSQRDK-----RLIEELKALIEF-SGEPIDVYL-VLSATT--KYEDLKDIYKHFSRLP-LDGLIFTKLDE 369 (424)
T ss_pred CCEEEEeCCCCCCCCH-----HHHHHHHHHHhc-cCCCCeEEE-EEECCC--CHHHHHHHHHHhCCCC-CCEEEEecccc
Confidence 6899999999754211 122233333331 113333344 556653 3345555666666544 34688999999
Q ss_pred cCccccHHHHHh
Q 006928 216 MDKGTNALEVLE 227 (625)
Q Consensus 216 ~~~~~~~~~~l~ 227 (625)
......+.+++.
T Consensus 370 t~~~G~i~~~~~ 381 (424)
T PRK05703 370 TSSLGSILSLLI 381 (424)
T ss_pred cccccHHHHHHH
Confidence 877766666655
No 319
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.95 E-value=8e-06 Score=75.70 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
..++++|..|+|||||+|+|++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 6899999999999999999999853
No 320
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=9.1e-05 Score=78.85 Aligned_cols=152 Identities=16% Similarity=0.273 Sum_probs=81.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCC--------CcceeeccCCCCccCChHHHHHHH
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRKKFTDFAAVRKEI 107 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i 107 (625)
..|++||.+|+||||.+-.|... +.-.. .+....+.+.+.+.- ..|+..+..|-....++.++...+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~-~~~~~----~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L 249 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAI-YGINS----DDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI 249 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHhhh----ccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHH
Confidence 46889999999999999999854 21000 000011122233221 334444433333333444444333
Q ss_pred HHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCC
Q 006928 108 SDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQ 185 (625)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~--~~~~iIl~v~~a~~ 185 (625)
.+ .. ..++.||||||.... . ...+.++ ..++. .++.-+++|++++.
T Consensus 250 ~~----~~-------------------~~DlVLIDTaGr~~~--~------~~~l~el-~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 250 TQ----SK-------------------DFDLVLVDTIGKSPK--D------FMKLAEM-KELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred HH----hC-------------------CCCEEEEcCCCCCcc--C------HHHHHHH-HHHHHhcCCCCeEEEEEcCCC
Confidence 22 11 268999999996642 1 1223333 23332 12322334667764
Q ss_pred ccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHh
Q 006928 186 DIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLE 227 (625)
Q Consensus 186 d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (625)
. ..+..+....+.+. ..+=+|+||.|....+..+.+++.
T Consensus 298 ~--~~~~~~~~~~~~~~-~~~~~I~TKlDet~~~G~~l~~~~ 336 (388)
T PRK12723 298 K--TSDVKEIFHQFSPF-SYKTVIFTKLDETTCVGNLISLIY 336 (388)
T ss_pred C--HHHHHHHHHHhcCC-CCCEEEEEeccCCCcchHHHHHHH
Confidence 3 33344455655443 356688999999988887777765
No 321
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.93 E-value=4e-05 Score=75.74 Aligned_cols=120 Identities=19% Similarity=0.315 Sum_probs=68.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc--ccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
+|+++|..+|||||..+.+.+. ..|.+.. -.|-.+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~-~~p~dT~~L~~T~~ve----------------------------------------- 38 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHK-YSPRDTLRLEPTIDVE----------------------------------------- 38 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEE-----------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcC-CCchhccccCCcCCce-----------------------------------------
Confidence 4899999999999999999986 4465532 0122111
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc-----
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT----- 189 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~----- 189 (625)
.-.+...+...+.+||.||-...-.. .....-....++..++|.|++..+.++..
T Consensus 39 ------------~~~v~~~~~~~l~iwD~pGq~~~~~~--------~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~ 98 (232)
T PF04670_consen 39 ------------KSHVRFLSFLPLNIWDCPGQDDFMEN--------YFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYL 98 (232)
T ss_dssp ------------EEEEECTTSCEEEEEEE-SSCSTTHT--------THTCCHHHHHCTESEEEEEEETT-STCHHHHHHH
T ss_pred ------------EEEEecCCCcEEEEEEcCCccccccc--------cccccHHHHHhccCEEEEEEEcccccHHHHHHHH
Confidence 11133334568999999996543211 00011223457888877755444344332
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
...++.+.+..| +....+.+.|+|++..+
T Consensus 99 ~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 99 SDCIEALRQYSP-NIKVFVFIHKMDLLSED 127 (232)
T ss_dssp HHHHHHHHHHST-T-EEEEEEE-CCCS-HH
T ss_pred HHHHHHHHHhCC-CCeEEEEEeecccCCHH
Confidence 223445667777 68889999999998654
No 322
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.92 E-value=9.7e-05 Score=77.51 Aligned_cols=159 Identities=19% Similarity=0.291 Sum_probs=98.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCC---C-----CcceeeccCCCCccCChHHHHHHH
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEG---G-----TDYAEFLHAPRKKFTDFAAVRKEI 107 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~i 107 (625)
--|++||+.|+||||.|--|..+-++-. -.... -+.+++. + +.|+..+..|-+...+..++..++
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~----~~~kV---aiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai 276 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLK----KKKKV---AIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAI 276 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhc----cCcce---EEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHH
Confidence 3589999999999999999987632000 01111 1223322 1 667888888888888888887776
Q ss_pred HHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCC-CEEEEEEecCCCc
Q 006928 108 SDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKP-SCIILAISPANQD 186 (625)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~-~~iIl~v~~a~~d 186 (625)
....+ .+++||||-|-... ....+.+| ..|+... +.-+.+|.+++.
T Consensus 277 ~~l~~-----------------------~d~ILVDTaGrs~~--------D~~~i~el-~~~~~~~~~i~~~Lvlsat~- 323 (407)
T COG1419 277 EALRD-----------------------CDVILVDTAGRSQY--------DKEKIEEL-KELIDVSHSIEVYLVLSATT- 323 (407)
T ss_pred HHhhc-----------------------CCEEEEeCCCCCcc--------CHHHHHHH-HHHHhccccceEEEEEecCc-
Confidence 65322 58999999995542 23444444 4455433 334455777763
Q ss_pred cccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeE
Q 006928 187 IATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWV 238 (625)
Q Consensus 187 ~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~ 238 (625)
...+...+..++...+... +++||+|....-.+..+++.. ..+...|+
T Consensus 324 -K~~dlkei~~~f~~~~i~~-~I~TKlDET~s~G~~~s~~~e--~~~PV~Yv 371 (407)
T COG1419 324 -KYEDLKEIIKQFSLFPIDG-LIFTKLDETTSLGNLFSLMYE--TRLPVSYV 371 (407)
T ss_pred -chHHHHHHHHHhccCCcce-eEEEcccccCchhHHHHHHHH--hCCCeEEE
Confidence 3445555666666544433 568999988776677777652 33334444
No 323
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.89 E-value=0.00014 Score=78.62 Aligned_cols=80 Identities=24% Similarity=0.256 Sum_probs=49.0
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHH-HhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVR-SYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~-~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
.++.||||||..... ...++++.. ..+..+|.++|+ ++++.. +++...++.+...-..+-+|+||+|
T Consensus 176 ~DvVIIDTAGr~~~d--------~~lm~El~~l~~~~~pdevlLV-vda~~g---q~av~~a~~F~~~l~i~gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHALE--------EDLIEEMKEIKEAVKPDEVLLV-IDATIG---QQAKNQAKAFHEAVGIGGIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccch--------HHHHHHHHHHHHHhcccceeEE-Eecccc---HHHHHHHHHHHhcCCCCEEEEeccc
Confidence 379999999965431 223333321 123357766664 455442 5666677766543345667899999
Q ss_pred ccCccccHHHHHh
Q 006928 215 LMDKGTNALEVLE 227 (625)
Q Consensus 215 ~~~~~~~~~~~l~ 227 (625)
....+..++.+..
T Consensus 244 ~~a~~G~~ls~~~ 256 (437)
T PRK00771 244 GTAKGGGALSAVA 256 (437)
T ss_pred CCCcccHHHHHHH
Confidence 9888776666654
No 324
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.88 E-value=0.00013 Score=67.24 Aligned_cols=21 Identities=19% Similarity=0.578 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 006928 38 VAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~ 58 (625)
|.++|..++||||++..|...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999865
No 325
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.87 E-value=1.8e-05 Score=84.10 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.+++||.+|+|||||+|+|++..
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 79999999999999999999864
No 326
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.86 E-value=0.00016 Score=64.73 Aligned_cols=72 Identities=21% Similarity=0.261 Sum_probs=48.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCC----CCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDP----TGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~----~~~rti~Vlt 211 (625)
..|.|.||.|+-..+ .++-+.|++-+|+.+|+..+++. -+.+...-+-+++|. ...++++..|
T Consensus 60 E~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~d~-eSf~rv~llKk~Idk~KdKKEvpiVVLaN 126 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPMDP-ESFQRVELLKKEIDKHKDKKEVPIVVLAN 126 (198)
T ss_pred heEEEeecccccCch------------hhhhHhHhccCceEEEEecCCCH-HHHHHHHHHHHHHhhccccccccEEEEec
Confidence 478999999986532 45778999999998887665542 122222224445553 3457778889
Q ss_pred cCcccCccc
Q 006928 212 KLDLMDKGT 220 (625)
Q Consensus 212 K~D~~~~~~ 220 (625)
|.|+..+.+
T Consensus 127 ~rdr~~p~~ 135 (198)
T KOG3883|consen 127 KRDRAEPRE 135 (198)
T ss_pred hhhcccchh
Confidence 999986654
No 327
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=2.1e-05 Score=72.05 Aligned_cols=112 Identities=16% Similarity=0.232 Sum_probs=68.6
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccHH--HHHHHHHhCCCCCceEEEec
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATSD--AIKLAREVDPTGERTFGVLT 211 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~~~--~l~l~~~~d~~~~rti~Vlt 211 (625)
...+.|||+-| ++..+++...|...+|.||.++++.+. .+..+. -..+..+=+-.|.|.+..+|
T Consensus 68 ~~~l~fwdlgG-------------Qe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lan 134 (197)
T KOG0076|consen 68 NAPLSFWDLGG-------------QESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLAN 134 (197)
T ss_pred cceeEEEEcCC-------------hHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcc
Confidence 36799999988 556689999999999998887766552 222221 11233333456899999999
Q ss_pred cCcccCccc--cHHHHHh-Cc-ccccCCCeEEEEeCChhhhhccCCHHHHHH
Q 006928 212 KLDLMDKGT--NALEVLE-GR-SYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (625)
Q Consensus 212 K~D~~~~~~--~~~~~l~-~~-~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (625)
|-|+-+.-+ ++..++. .+ ...-...+.+|.....+++++++.+.....
T Consensus 135 kqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 135 KQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred hhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHH
Confidence 999876543 1222221 01 112234455555555566667666665543
No 328
>PRK13796 GTPase YqeH; Provisional
Probab=97.86 E-value=1.4e-05 Score=84.92 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++|||.+|+|||||||+|++..
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhc
Confidence 68999999999999999999753
No 329
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.85 E-value=6.3e-05 Score=69.99 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=22.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
..+++++|.+|+||||++|+|.+...
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45789999999999999999998653
No 330
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0001 Score=65.84 Aligned_cols=120 Identities=22% Similarity=0.289 Sum_probs=77.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
=|-.++|+|+.++|||.||...+..+| --++. ||
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kf-kDdss------------HT--------------------------------- 41 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKF-KDDSS------------HT--------------------------------- 41 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhh-ccccc------------ce---------------------------------
Confidence 466899999999999999999998776 11110 10
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc--HH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--SD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~--~~ 191 (625)
.| ..|-...|.+ +-....|.||||.| ++.++..+++|.+.+-..+|+.+-.+.|--+ ..
T Consensus 42 -iG--veFgSrIinV---GgK~vKLQIWDTAG-------------QErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtn 102 (214)
T KOG0086|consen 42 -IG--VEFGSRIVNV---GGKTVKLQIWDTAG-------------QERFRSVTRSYYRGAAGALLVYDITSRDSFNALTN 102 (214)
T ss_pred -ee--eeecceeeee---cCcEEEEEEeeccc-------------HHHHHHHHHHHhccccceEEEEeccchhhHHHHHH
Confidence 00 1111222222 11235689999999 6788999999999887777765544443222 33
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
|+.=++.+.+...-+|.+-||-|+-..
T Consensus 103 WL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 103 WLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred HHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 555566666655566667799998654
No 331
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.80 E-value=0.00013 Score=74.37 Aligned_cols=82 Identities=22% Similarity=0.322 Sum_probs=46.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc-----CCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEe
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE-----KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVL 210 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~-----~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~Vl 210 (625)
.++.||||||..... ....+.+..+. +.+. .+|-++| |++++. ..+.+..+......-...-+|+
T Consensus 155 ~D~ViIDT~G~~~~d-----~~~~~el~~~~-~~~~~~~~~~~~~~~L-Vl~a~~---~~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 155 IDVVLIDTAGRLQNK-----VNLMDELKKIK-RVIKKVDKDAPDEVLL-VLDATT---GQNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred CCEEEEeCCCCCcch-----HHHHHHHHHHH-HHHhcccCCCCceEEE-EEECCC---CHHHHHHHHHHHhhCCCCEEEE
Confidence 689999999976421 11222223221 2222 3676666 555553 2333333444332224577899
Q ss_pred ccCcccCccccHHHHHh
Q 006928 211 TKLDLMDKGTNALEVLE 227 (625)
Q Consensus 211 tK~D~~~~~~~~~~~l~ 227 (625)
||+|....+....++..
T Consensus 225 TKlDe~~~~G~~l~~~~ 241 (272)
T TIGR00064 225 TKLDGTAKGGIILSIAY 241 (272)
T ss_pred EccCCCCCccHHHHHHH
Confidence 99999888776666654
No 332
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=2.8e-05 Score=69.81 Aligned_cols=100 Identities=12% Similarity=0.192 Sum_probs=58.0
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccHHHHHHHHHhCC---CCC-ceEEEe
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATSDAIKLAREVDP---TGE-RTFGVL 210 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~~~~l~l~~~~d~---~~~-rti~Vl 210 (625)
.+|.+|||.| ++.++.++..|.+++=..+|...-.+. .+-+ ...++.++.. ... -+++.-
T Consensus 67 ihLQlWDTAG-------------QERFRSLTTAFfRDAMGFlLiFDlT~eqSFLn--vrnWlSQL~~hAYcE~PDivlcG 131 (219)
T KOG0081|consen 67 IHLQLWDTAG-------------QERFRSLTTAFFRDAMGFLLIFDLTSEQSFLN--VRNWLSQLQTHAYCENPDIVLCG 131 (219)
T ss_pred EEEeeecccc-------------HHHHHHHHHHHHHhhccceEEEeccchHHHHH--HHHHHHHHHHhhccCCCCEEEEc
Confidence 3689999999 677899999999988776665543321 1111 1112222221 123 366778
Q ss_pred ccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhc
Q 006928 211 TKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINK 250 (625)
Q Consensus 211 tK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (625)
||+|+.+...--.+-...-..+.+++|+....-...++..
T Consensus 132 NK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~k 171 (219)
T KOG0081|consen 132 NKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEK 171 (219)
T ss_pred CccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHH
Confidence 9999987643111111111346678888877665544433
No 333
>PTZ00099 rab6; Provisional
Probab=97.79 E-value=6.1e-05 Score=71.73 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=66.0
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccH-HHHHHHHHhCCCCCceEEEecc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATS-DAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~~-~~l~l~~~~d~~~~rti~VltK 212 (625)
...+.|+||||.. ....+...|++.+|++|+++...+. .+... .++..+......+.++++|.||
T Consensus 28 ~v~l~iwDt~G~e-------------~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAGQE-------------RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCChH-------------HhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 3678999999943 2355677899999988776553331 12221 2332222223335778999999
Q ss_pred CcccCccc-cHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHHHHHHh
Q 006928 213 LDLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKERE 263 (625)
Q Consensus 213 ~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~ 263 (625)
+|+..... ...+... .....+..|+.+...+..++......+.....+.+
T Consensus 95 ~DL~~~~~v~~~e~~~-~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQ-KAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cccccccCCCHHHHHH-HHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 99964321 1111111 01122345666777777777776666665555533
No 334
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.79 E-value=0.00015 Score=68.75 Aligned_cols=79 Identities=27% Similarity=0.419 Sum_probs=43.9
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
.++.|+|+||..... .+..+.+..+. . ...++.+++++. +.. ..+..+.+..+.....-.-+|+||+|.
T Consensus 83 ~d~viiDt~g~~~~~-----~~~l~~l~~l~-~-~~~~~~~~lVv~-~~~---~~~~~~~~~~~~~~~~~~~viltk~D~ 151 (173)
T cd03115 83 FDVVIVDTAGRLQID-----ENLMEELKKIK-R-VVKPDEVLLVVD-AMT---GQDAVNQAKAFNEALGITGVILTKLDG 151 (173)
T ss_pred CCEEEEECcccchhh-----HHHHHHHHHHH-h-hcCCCeEEEEEE-CCC---ChHHHHHHHHHHhhCCCCEEEEECCcC
Confidence 678999999965421 11222222221 1 234777677554 442 233334444443222257788999999
Q ss_pred cCccccHHHH
Q 006928 216 MDKGTNALEV 225 (625)
Q Consensus 216 ~~~~~~~~~~ 225 (625)
........++
T Consensus 152 ~~~~g~~~~~ 161 (173)
T cd03115 152 DARGGAALSI 161 (173)
T ss_pred CCCcchhhhh
Confidence 8877665554
No 335
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.78 E-value=6.1e-05 Score=76.24 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
..+++|..|+|||||+|+|.+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 6888999999999999999985
No 336
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.77 E-value=2.5e-05 Score=77.94 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=23.1
Q ss_pred EECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeec
Q 006928 40 VVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQT 80 (625)
Q Consensus 40 vvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~ 80 (625)
|+|++||||||+..++... ++. -.|.+..++|-..
T Consensus 1 ViGpaGSGKTT~~~~~~~~--~~~----~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW--LES----NGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH--HTT----T-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHH--HHh----ccCCceEEEcchH
Confidence 7999999999999999864 322 2366777776444
No 337
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00016 Score=63.53 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=76.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
+-.-+++|+.++|||.||...+..+| ...||-.+-.
T Consensus 11 ifkyiiigdmgvgkscllhqftekkf-------madcphtigv------------------------------------- 46 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKF-------MADCPHTIGV------------------------------------- 46 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHH-------hhcCCcccce-------------------------------------
Confidence 44678899999999999999998876 4566722210
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc---cccHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD---IATSD 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d---~~~~~ 191 (625)
.|-.. .+++.+.. ..|.+|||.| .+.++..+++|.+.+-..+. |-+-+.. -..+.
T Consensus 47 -----efgtr--iievsgqk-iklqiwdtag-------------qerfravtrsyyrgaagalm-vyditrrstynhlss 104 (215)
T KOG0097|consen 47 -----EFGTR--IIEVSGQK-IKLQIWDTAG-------------QERFRAVTRSYYRGAAGALM-VYDITRRSTYNHLSS 104 (215)
T ss_pred -----eccee--EEEecCcE-EEEEEeeccc-------------HHHHHHHHHHHhccccceeE-EEEehhhhhhhhHHH
Confidence 01111 12233322 5689999999 67789999999988765444 3333221 11244
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
|+.=++.+..-..-++.+-||.|+-+..
T Consensus 105 wl~dar~ltnpnt~i~lignkadle~qr 132 (215)
T KOG0097|consen 105 WLTDARNLTNPNTVIFLIGNKADLESQR 132 (215)
T ss_pred HHhhhhccCCCceEEEEecchhhhhhcc
Confidence 5555566554455567778999997654
No 338
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=6.4e-05 Score=73.74 Aligned_cols=133 Identities=20% Similarity=0.362 Sum_probs=84.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|..||..|-|||||++.|.+.+| ++.++|..--.+.|+.. +-.+..
T Consensus 44 NilCvGETg~GKsTLmdtLFNt~f---~~~p~~H~~~~V~L~~~------------------------------TyelqE 90 (406)
T KOG3859|consen 44 NILCVGETGLGKSTLMDTLFNTKF---ESEPSTHTLPNVKLQAN------------------------------TYELQE 90 (406)
T ss_pred EEEEeccCCccHHHHHHHHhcccc---CCCCCccCCCCceeecc------------------------------hhhhhh
Confidence 689999999999999999999886 22233322211121111 001111
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCC-ccHHHHHHHHHHHhhc---------------CCCEEEEEE
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQP-ESIVEDIENMVRSYVE---------------KPSCIILAI 180 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~-~~~~~~i~~~v~~yi~---------------~~~~iIl~v 180 (625)
.-+. ..||+|||-|+.+.-.++.+ +.+.+.+......|++ +.++.+.++
T Consensus 91 -------snvr--------lKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI 155 (406)
T KOG3859|consen 91 -------SNVR--------LKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFI 155 (406)
T ss_pred -------cCee--------EEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEe
Confidence 1122 35899999999876555332 4466666666666653 345556667
Q ss_pred ecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 181 SPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 181 ~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.|....+..-|.. ..+++|. ...+|-||-|.|.+...
T Consensus 156 ~PTGH~LKslDLv-tmk~Lds-kVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 156 SPTGHSLKSLDLV-TMKKLDS-KVNIIPVIAKADTISKE 192 (406)
T ss_pred cCCCcchhHHHHH-HHHHHhh-hhhhHHHHHHhhhhhHH
Confidence 7877777666655 4566775 57899999999998764
No 339
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.75 E-value=0.0015 Score=65.68 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
+.+.|.+-|.||+|||||+++|.-.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHH
Confidence 5678999999999999999999743
No 340
>PRK10867 signal recognition particle protein; Provisional
Probab=97.73 E-value=0.00018 Score=77.59 Aligned_cols=81 Identities=25% Similarity=0.389 Sum_probs=48.3
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
.++.||||||..... +.....+..+ ...+ .++-++| |+++.. .+++...++.+...-..+-+|+||+|.
T Consensus 184 ~DvVIIDTaGrl~~d-----~~lm~eL~~i-~~~v-~p~evll-Vlda~~---gq~av~~a~~F~~~~~i~giIlTKlD~ 252 (433)
T PRK10867 184 YDVVIVDTAGRLHID-----EELMDELKAI-KAAV-NPDEILL-VVDAMT---GQDAVNTAKAFNEALGLTGVILTKLDG 252 (433)
T ss_pred CCEEEEeCCCCcccC-----HHHHHHHHHH-HHhh-CCCeEEE-EEeccc---HHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 689999999965421 1122222222 2233 5666655 445542 466767777766433456788999998
Q ss_pred cCccccHHHHHh
Q 006928 216 MDKGTNALEVLE 227 (625)
Q Consensus 216 ~~~~~~~~~~l~ 227 (625)
...+..+..+..
T Consensus 253 ~~rgG~alsi~~ 264 (433)
T PRK10867 253 DARGGAALSIRA 264 (433)
T ss_pred cccccHHHHHHH
Confidence 776665555543
No 341
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00027 Score=70.16 Aligned_cols=131 Identities=18% Similarity=0.323 Sum_probs=81.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
-.|..||....|||||--||++. ..-.+. ....+++++.+.-+
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~-la~~~~-----------------------------~~~~~y~~id~aPe------- 55 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTV-LAKKGG-----------------------------AEAKAYDQIDNAPE------- 55 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHH-HHhhcc-----------------------------ccccchhhhccCch-------
Confidence 36899999999999999999975 211110 11122222221111
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc-HHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT-SDAIK 194 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~-~~~l~ 194 (625)
.+..+++-++-+++....+ .++..||.|| -.+.+++|+-... +.|..||+|.++...+.. .+..-
T Consensus 56 Ek~rGITIntahveyet~~-rhyahVDcPG------------HaDYvKNMItgAa-qmDgAILVVsA~dGpmPqTrEHiL 121 (394)
T COG0050 56 EKARGITINTAHVEYETAN-RHYAHVDCPG------------HADYVKNMITGAA-QMDGAILVVAATDGPMPQTREHIL 121 (394)
T ss_pred HhhcCceeccceeEEecCC-ceEEeccCCC------------hHHHHHHHhhhHH-hcCccEEEEEcCCCCCCcchhhhh
Confidence 1233455555566555543 7899999999 3556677766554 467778877666554433 33344
Q ss_pred HHHHhCCCCCceEEEeccCcccCcc
Q 006928 195 LAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+++++.- .++++++||+|+++..
T Consensus 122 larqvGv--p~ivvflnK~Dmvdd~ 144 (394)
T COG0050 122 LARQVGV--PYIVVFLNKVDMVDDE 144 (394)
T ss_pred hhhhcCC--cEEEEEEecccccCcH
Confidence 7777632 3677889999999853
No 342
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.72 E-value=2.7e-05 Score=82.81 Aligned_cols=33 Identities=36% Similarity=0.515 Sum_probs=27.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCccccccccccccc
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 72 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p 72 (625)
.-.|.+||-||+||||+||+|+|.+. --||+-|
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk-----VsVS~TP 346 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK-----VSVSSTP 346 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce-----eeeecCC
Confidence 45789999999999999999999986 3455555
No 343
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.70 E-value=0.00014 Score=64.18 Aligned_cols=114 Identities=17% Similarity=0.238 Sum_probs=75.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
-+|.+.|--||||+|+|.-|.|.+. +.-.
T Consensus 18 irilllGldnAGKTT~LKqL~sED~--~hlt------------------------------------------------- 46 (185)
T KOG0074|consen 18 IRILLLGLDNAGKTTFLKQLKSEDP--RHLT------------------------------------------------- 46 (185)
T ss_pred EEEEEEecCCCcchhHHHHHccCCh--hhcc-------------------------------------------------
Confidence 3799999999999999999999874 2211
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DA 192 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~~ 192 (625)
.++||+-.. +.+.+...|+++|.-| .+.|+..+.+|.++.|.+|.+++++....... +.
T Consensus 47 -pT~GFn~k~----v~~~g~f~LnvwDiGG-------------qr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el 108 (185)
T KOG0074|consen 47 -PTNGFNTKK----VEYDGTFHLNVWDIGG-------------QRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEEL 108 (185)
T ss_pred -ccCCcceEE----EeecCcEEEEEEecCC-------------ccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHH
Confidence 112233221 3344557899999988 34457788999999999888766444322222 22
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++..+..-...|+.+-.||-|++..
T Consensus 109 ~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 109 VELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred HHHhhhhhhhccceeehhhhhHHHhh
Confidence 23444444455777788899998754
No 344
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.70 E-value=0.00013 Score=75.11 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
..++++|.+|+|||||+|+|+|...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 4799999999999999999999864
No 345
>PRK00098 GTPase RsgA; Reviewed
Probab=97.69 E-value=0.00013 Score=75.61 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|.+|+|||||+|+|+|..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999975
No 346
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.69 E-value=9.2e-05 Score=67.92 Aligned_cols=69 Identities=17% Similarity=0.295 Sum_probs=46.0
Q ss_pred CcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhC--CCCCceEEEeccCc
Q 006928 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVD--PTGERTFGVLTKLD 214 (625)
Q Consensus 137 ~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d--~~~~rti~VltK~D 214 (625)
.+.+|||.| .+.+..+++.|.+.+.+.+|+. +.++..+-.-.+.+-+++. -...||++|-||+|
T Consensus 70 r~mlWdtag-------------qeEfDaItkAyyrgaqa~vLVF-STTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKID 135 (246)
T KOG4252|consen 70 RSMLWDTAG-------------QEEFDAITKAYYRGAQASVLVF-STTDRYSFEATLEWYNKVQKETERIPTVFVQNKID 135 (246)
T ss_pred HHHHHHhcc-------------chhHHHHHHHHhccccceEEEE-ecccHHHHHHHHHHHHHHHHHhccCCeEEeeccch
Confidence 356899988 4455778889999998877754 4333232222333444433 24689999999999
Q ss_pred ccCcc
Q 006928 215 LMDKG 219 (625)
Q Consensus 215 ~~~~~ 219 (625)
+++..
T Consensus 136 lveds 140 (246)
T KOG4252|consen 136 LVEDS 140 (246)
T ss_pred hhHhh
Confidence 98763
No 347
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.68 E-value=0.00022 Score=84.30 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=44.7
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
.|.++||||||.. .+..+...+...+|++++++ +++.++..+.. ..+..+...+.|+|+|+||+|
T Consensus 525 ~p~i~fiDTPGhe-------------~F~~lr~~g~~~aDivlLVV-Da~~Gi~~qT~-e~I~~lk~~~iPiIVViNKiD 589 (1049)
T PRK14845 525 IPGLLFIDTPGHE-------------AFTSLRKRGGSLADLAVLVV-DINEGFKPQTI-EAINILRQYKTPFVVAANKID 589 (1049)
T ss_pred cCcEEEEECCCcH-------------HHHHHHHhhcccCCEEEEEE-ECcccCCHhHH-HHHHHHHHcCCCEEEEEECCC
Confidence 4679999999922 22444555677899877755 56554444322 233334445789999999999
Q ss_pred ccC
Q 006928 215 LMD 217 (625)
Q Consensus 215 ~~~ 217 (625)
+..
T Consensus 590 L~~ 592 (1049)
T PRK14845 590 LIP 592 (1049)
T ss_pred Ccc
Confidence 974
No 348
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.63 E-value=0.00028 Score=76.17 Aligned_cols=81 Identities=27% Similarity=0.375 Sum_probs=48.9
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
.++.||||||..... +.....+..+. . .-.++-++|++ ++.. .+++...++.+...-..+-+|+||+|.
T Consensus 183 ~DvVIIDTaGr~~~d-----~~l~~eL~~i~-~-~~~p~e~lLVv-da~t---gq~~~~~a~~f~~~v~i~giIlTKlD~ 251 (428)
T TIGR00959 183 FDVVIVDTAGRLQID-----EELMEELAAIK-E-ILNPDEILLVV-DAMT---GQDAVNTAKTFNERLGLTGVVLTKLDG 251 (428)
T ss_pred CCEEEEeCCCccccC-----HHHHHHHHHHH-H-hhCCceEEEEE-eccc---hHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 689999999965421 11222233322 2 33567666655 4542 467777777766433456788999997
Q ss_pred cCccccHHHHHh
Q 006928 216 MDKGTNALEVLE 227 (625)
Q Consensus 216 ~~~~~~~~~~l~ 227 (625)
...+..+..+..
T Consensus 252 ~~~~G~~lsi~~ 263 (428)
T TIGR00959 252 DARGGAALSVRS 263 (428)
T ss_pred cccccHHHHHHH
Confidence 776665555543
No 349
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00036 Score=76.92 Aligned_cols=131 Identities=19% Similarity=0.274 Sum_probs=81.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
+..|-++|+|.--+|||-||..|-|.++---.+|..| ..-+..|.....++.. +.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggit---------------------qqIgAt~fp~~ni~e~----tk 527 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGIT---------------------QQIGATYFPAENIREK----TK 527 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhcccccccccccee---------------------eeccccccchHHHHHH----HH
Confidence 5889999999999999999999999875222222111 1112233333333322 22
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH--
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS-- 190 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~-- 190 (625)
.+.... -.....|.+.+||||| .+.+.++-.+...-+|.+||+| +--.++..+
T Consensus 528 ~~~~~~-----------K~~~kvPg~lvIdtpg-------------hEsFtnlRsrgsslC~~aIlvv-dImhGlepqti 582 (1064)
T KOG1144|consen 528 ELKKDA-----------KKRLKVPGLLVIDTPG-------------HESFTNLRSRGSSLCDLAILVV-DIMHGLEPQTI 582 (1064)
T ss_pred HHHhhh-----------hhhcCCCeeEEecCCC-------------chhhhhhhhccccccceEEEEe-ehhccCCcchh
Confidence 221100 0112458899999999 2334555555667799888865 444555554
Q ss_pred HHHHHHHHhCCCCCceEEEeccCccc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLM 216 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~ 216 (625)
+.+.++ .....|.|+.|||+|.+
T Consensus 583 ESi~lL---R~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 583 ESINLL---RMRKTPFIVALNKIDRL 605 (1064)
T ss_pred HHHHHH---HhcCCCeEEeehhhhhh
Confidence 344444 45678999999999986
No 350
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.55 E-value=0.00029 Score=68.99 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|.|+++|..|||||||++.++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999865
No 351
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.52 E-value=0.00053 Score=74.76 Aligned_cols=91 Identities=23% Similarity=0.264 Sum_probs=49.1
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
.++.+|||+|...... ...+.+. ++..... +.-.+| |++++.. ..+..+.++.+... ..+-+|+||+|.
T Consensus 335 ~d~VLIDTaGr~~~d~-----~~~e~~~-~l~~~~~-p~e~~L-VLdAt~~--~~~l~~i~~~f~~~-~~~g~IlTKlDe 403 (484)
T PRK06995 335 KHIVLIDTIGMSQRDR-----MVSEQIA-MLHGAGA-PVKRLL-LLNATSH--GDTLNEVVQAYRGP-GLAGCILTKLDE 403 (484)
T ss_pred CCeEEeCCCCcChhhH-----HHHHHHH-HHhccCC-CCeeEE-EEeCCCc--HHHHHHHHHHhccC-CCCEEEEeCCCC
Confidence 4789999999654211 0111111 1111111 333344 5566532 23444456666554 456778999999
Q ss_pred cCccccHHHHHhCcccccCCCeEE
Q 006928 216 MDKGTNALEVLEGRSYRLQHPWVG 239 (625)
Q Consensus 216 ~~~~~~~~~~l~~~~~~l~~g~~~ 239 (625)
......+.+++.. ..+..-|++
T Consensus 404 t~~~G~~l~i~~~--~~lPI~yvt 425 (484)
T PRK06995 404 AASLGGALDVVIR--YKLPLHYVS 425 (484)
T ss_pred cccchHHHHHHHH--HCCCeEEEe
Confidence 8888777777652 333344443
No 352
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0006 Score=60.30 Aligned_cols=126 Identities=19% Similarity=0.233 Sum_probs=79.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
=-+|+.+|-..|||||+|-.|--.. ++|-.||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~-------~~~~ipT----------------------------------------- 48 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQ-------SVTTIPT----------------------------------------- 48 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCC-------Ccccccc-----------------------------------------
Confidence 3479999999999999999886432 2333331
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
.||+-+.+ ......+.++|+-| .+.++.+.++|......+|+++++|..|--..--.+
T Consensus 49 ----vGFnvetV-----tykN~kfNvwdvGG-------------qd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~E 106 (180)
T KOG0071|consen 49 ----VGFNVETV-----TYKNVKFNVWDVGG-------------QDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNE 106 (180)
T ss_pred ----cceeEEEE-----EeeeeEEeeeeccC-------------chhhhHHHHhhccCCceEEEEEeccchhhHHHHHHH
Confidence 12222221 12235678999988 456689999999999999998888765322111112
Q ss_pred HHHHhCC---CCCceEEEeccCcccCccc--cHHHHHhCcc
Q 006928 195 LAREVDP---TGERTFGVLTKLDLMDKGT--NALEVLEGRS 230 (625)
Q Consensus 195 l~~~~d~---~~~rti~VltK~D~~~~~~--~~~~~l~~~~ 230 (625)
+-+-+.. ...+.++..||-|+.+... ++.+.++-+.
T Consensus 107 Lh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~ 147 (180)
T KOG0071|consen 107 LHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELER 147 (180)
T ss_pred HHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccc
Confidence 3232322 2355667789999987654 4566666433
No 353
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00037 Score=74.73 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
++-.+.||-.--.|||||..+|+..- | |.-+. .+.+.+-|--++. +
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~t------g--~i~~~------------------~~q~q~LDkl~vE------R-- 104 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELT------G--TIDNN------------------IGQEQVLDKLQVE------R-- 104 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------C--CCCCC------------------Cchhhhhhhhhhh------h--
Confidence 44578999999999999999998542 2 11110 0111111111111 1
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
..| -.+....-.+........-|.+|||||-.+.... |.+.+.-++.+||+ ++|+++...|...
T Consensus 105 ERG--ITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E-------------VsRslaac~G~lLv-VDA~qGvqAQT~a 168 (650)
T KOG0462|consen 105 ERG--ITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE-------------VSRSLAACDGALLV-VDASQGVQAQTVA 168 (650)
T ss_pred hcC--cEEEeeeeEEEEEcCCceEEEeecCCCcccccce-------------ehehhhhcCceEEE-EEcCcCchHHHHH
Confidence 111 2222222222222222356899999997665433 44555668887775 4677777766655
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+...+ ..+...|.||||+|+-..
T Consensus 169 nf~lAf-e~~L~iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 169 NFYLAF-EAGLAIIPVLNKIDLPSA 192 (650)
T ss_pred HHHHHH-HcCCeEEEeeeccCCCCC
Confidence 444433 347899999999998654
No 354
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00063 Score=74.24 Aligned_cols=133 Identities=16% Similarity=0.271 Sum_probs=79.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
.-.++++|.-.+|||+|+..|++... |... .+.+..|+.++.. . ..
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~-----~~~e~~lrytD~l--------------------~--------~E 173 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTH-PDFS-----KNTEADLRYTDTL--------------------F--------YE 173 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceecc-cccc-----ccccccccccccc--------------------h--------hh
Confidence 44689999999999999999999864 4332 2222222222100 0 00
Q ss_pred hCCCCccccccEEEEEecCCC--CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNV--VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~--~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
..++-++-..+..+-+..... .-++++||||-.... .+ +...++-+|.++|+++.+. +..-...
T Consensus 174 ~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~------------DE-~ta~l~~sDgvVlvvDv~E-GVmlntE 239 (971)
T KOG0468|consen 174 QERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFS------------DE-TTASLRLSDGVVLVVDVAE-GVMLNTE 239 (971)
T ss_pred HhcCceEeecceEEEEecCcCceeeeeeecCCCcccch------------HH-HHHHhhhcceEEEEEEccc-CceeeHH
Confidence 112234445555555544332 457899999955432 22 2334567898888665543 3333222
Q ss_pred HHHHHHhCCCCCceEEEeccCccc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLM 216 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~ 216 (625)
++++..-....++.+|+||+|.+
T Consensus 240 -r~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 240 -RIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred -HHHHHHHhccCcEEEEEehhHHH
Confidence 25566666789999999999975
No 355
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0007 Score=71.29 Aligned_cols=69 Identities=23% Similarity=0.301 Sum_probs=43.3
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEeccCc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLTKLD 214 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D 214 (625)
..++|||.||. .+.+.+|+.. +.-.|+.+| |++++..+..+... .+.-+|-.|.+ -++|+||+|
T Consensus 50 ~~~~fIDvpgh------------~~~i~~miag-~~~~d~alL-vV~~deGl~~qtgE-hL~iLdllgi~~giivltk~D 114 (447)
T COG3276 50 GVMGFIDVPGH------------PDFISNLLAG-LGGIDYALL-VVAADEGLMAQTGE-HLLILDLLGIKNGIIVLTKAD 114 (447)
T ss_pred CceEEeeCCCc------------HHHHHHHHhh-hcCCceEEE-EEeCccCcchhhHH-HHHHHHhcCCCceEEEEeccc
Confidence 37899999993 4555666443 345677666 45666544444322 22334444544 599999999
Q ss_pred ccCcc
Q 006928 215 LMDKG 219 (625)
Q Consensus 215 ~~~~~ 219 (625)
..+..
T Consensus 115 ~~d~~ 119 (447)
T COG3276 115 RVDEA 119 (447)
T ss_pred cccHH
Confidence 99763
No 356
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00045 Score=69.55 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=29.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeec
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQT 80 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~ 80 (625)
.|..||.--.|||||..||+|..- ....--.++-+.++|...
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvwT--~~hseElkRgitIkLGYA 53 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVWT--DRHSEELKRGITIKLGYA 53 (415)
T ss_pred Eeeeeeecccchhhheehhhceee--echhHHHhcCcEEEeccc
Confidence 588999999999999999999742 011123455566666544
No 357
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.32 E-value=0.0015 Score=63.37 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|.++||||||+++|.+.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999975
No 358
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.31 E-value=0.00026 Score=68.98 Aligned_cols=101 Identities=22% Similarity=0.293 Sum_probs=61.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccc---cccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI---VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~---~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
-++-++|-||+||||++..|+|.. -|+.++. -|+.|-.++
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~------------------------------------ 102 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIR------------------------------------ 102 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEe------------------------------------
Confidence 367789999999999999999984 4554432 223332222
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
...+.+.+.|+||++..+..+... -..+..-.+-+++ |++|.++..++.....
T Consensus 103 --------------------y~gaKiqlldlpgiiegakdgkgr------g~qviavartcnl-i~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 103 --------------------YKGAKIQLLDLPGIIEGAKDGKGR------GKQVIAVARTCNL-IFIVLDVLKPLSHKKI 155 (358)
T ss_pred --------------------ccccceeeecCcchhcccccCCCC------ccEEEEEeecccE-EEEEeeccCcccHHHH
Confidence 223779999999999987664322 1122333456775 4556677655544332
Q ss_pred HHHHHHhCCC
Q 006928 193 IKLAREVDPT 202 (625)
Q Consensus 193 l~l~~~~d~~ 202 (625)
+-+++...
T Consensus 156 --ie~eleg~ 163 (358)
T KOG1487|consen 156 --IEKELEGF 163 (358)
T ss_pred --HHHhhhcc
Confidence 33444433
No 359
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.30 E-value=0.00032 Score=70.55 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.=+++.|||-||+|||||+||+-...
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~ 167 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVH 167 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHH
Confidence 35789999999999999999997553
No 360
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.30 E-value=0.002 Score=78.81 Aligned_cols=57 Identities=26% Similarity=0.377 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCccccc
Q 006928 6 SLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (625)
Q Consensus 6 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~ 64 (625)
.+..+-.++.++...+......-..--..||-.+|||+++|||||+|+.- |.+| |-.
T Consensus 82 ~~~~l~~~~~~a~~~Lk~~~~~~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~ 138 (1169)
T TIGR03348 82 EIRELRARFNEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLA 138 (1169)
T ss_pred HHHHHHHHHHHHHHHHhhccccCchhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCc
Confidence 44455666666666664321000011257999999999999999999998 8874 654
No 361
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.28 E-value=0.0037 Score=66.03 Aligned_cols=78 Identities=23% Similarity=0.269 Sum_probs=54.1
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHH-HhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVR-SYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~-~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
.++.||||.|-... ..+.+.++.. +-+-+||-++|++++.. -+++...|+.++..-.=|=+|+||+|
T Consensus 183 ~DvvIvDTAGRl~i--------de~Lm~El~~Ik~~~~P~E~llVvDam~----GQdA~~~A~aF~e~l~itGvIlTKlD 250 (451)
T COG0541 183 YDVVIVDTAGRLHI--------DEELMDELKEIKEVINPDETLLVVDAMI----GQDAVNTAKAFNEALGITGVILTKLD 250 (451)
T ss_pred CCEEEEeCCCcccc--------cHHHHHHHHHHHhhcCCCeEEEEEeccc----chHHHHHHHHHhhhcCCceEEEEccc
Confidence 68999999995542 2344444432 33446787777665543 58888888888876666778999999
Q ss_pred ccCccccHHHH
Q 006928 215 LMDKGTNALEV 225 (625)
Q Consensus 215 ~~~~~~~~~~~ 225 (625)
--.+|.-++.+
T Consensus 251 GdaRGGaALS~ 261 (451)
T COG0541 251 GDARGGAALSA 261 (451)
T ss_pred CCCcchHHHhh
Confidence 88877655444
No 362
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.00051 Score=61.01 Aligned_cols=108 Identities=19% Similarity=0.269 Sum_probs=64.8
Q ss_pred CCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc---ccHHHHHHHHHhCCCCCceEEEe
Q 006928 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---ATSDAIKLAREVDPTGERTFGVL 210 (625)
Q Consensus 134 ~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~---~~~~~l~l~~~~d~~~~rti~Vl 210 (625)
....+.++|+-|=.+ ++-.++-|..+.+++|.+|++++.|- +..+...++++-.-.+...+++.
T Consensus 60 KNLk~~vwdLggqtS-------------irPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~a 126 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTS-------------IRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFA 126 (182)
T ss_pred ccccceeeEccCccc-------------ccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEe
Confidence 346789999998443 36678999999999999998887643 22333334444444456778889
Q ss_pred ccCcccCccc--cHHHHHhCcccccCCCeEEEEeCCh---hhhhccCCHHH
Q 006928 211 TKLDLMDKGT--NALEVLEGRSYRLQHPWVGIVNRSQ---ADINKNVDMIA 256 (625)
Q Consensus 211 tK~D~~~~~~--~~~~~l~~~~~~l~~g~~~v~~~s~---~~~~~~~~~~~ 256 (625)
||.|....-+ ++...+.- ..++...+.++..|+ .+++...+++.
T Consensus 127 nKqD~~~~~t~~E~~~~L~l--~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~ 175 (182)
T KOG0072|consen 127 NKQDYSGALTRSEVLKMLGL--QKLKDRIWQIVKTSAVKGEGLDPAMDWLQ 175 (182)
T ss_pred ccccchhhhhHHHHHHHhCh--HHHhhheeEEEeeccccccCCcHHHHHHH
Confidence 9999865433 33333332 233333344554454 34444444433
No 363
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.0012 Score=69.13 Aligned_cols=137 Identities=18% Similarity=0.237 Sum_probs=78.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
-..++|-.|-||||||-|.|+=.----+.+|.+..+- + ......||-++.+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk-------~------------~~~a~SDWM~iEk---------- 63 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRK-------S------------GKHAKSDWMEIEK---------- 63 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeecc-------C------------CcccccHHHHHHH----------
Confidence 3689999999999999999872110012222222111 1 0001123333221
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
..|+|-..-.++..+. ..-+.|+||||--+- .+=+++-+..+|+.+.++++| ..+..+. +++
T Consensus 64 --qRGISVtsSVMqF~Y~-~~~iNLLDTPGHeDF-------------SEDTYRtLtAvDsAvMVIDaA-KGiE~qT-~KL 125 (528)
T COG4108 64 --QRGISVTSSVMQFDYA-DCLVNLLDTPGHEDF-------------SEDTYRTLTAVDSAVMVIDAA-KGIEPQT-LKL 125 (528)
T ss_pred --hcCceEEeeEEEeccC-CeEEeccCCCCcccc-------------chhHHHHHHhhheeeEEEecc-cCccHHH-HHH
Confidence 2334433333333333 456899999994332 222455666788877755544 4565553 446
Q ss_pred HHHhCCCCCceEEEeccCcccCcc
Q 006928 196 AREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.+-..-.+.|++-.+||+|.....
T Consensus 126 feVcrlR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 126 FEVCRLRDIPIFTFINKLDREGRD 149 (528)
T ss_pred HHHHhhcCCceEEEeeccccccCC
Confidence 666667899999999999986543
No 364
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.21 E-value=0.004 Score=60.55 Aligned_cols=86 Identities=24% Similarity=0.405 Sum_probs=52.9
Q ss_pred CcEEEeC-CCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH-HHHHHHHhCCCCCceEEEeccCc
Q 006928 137 NLTLIDL-PGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-AIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 137 ~ltlvDl-PGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~-~l~l~~~~d~~~~rti~VltK~D 214 (625)
++.+||| .|+ +.+-+.-++.+|.+|.+|.|....+.+++ ..+++.+++ -+|+.+|+||+|
T Consensus 135 e~VivDtEAGi----------------EHfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg--~k~i~~V~NKv~ 196 (255)
T COG3640 135 EVVIVDTEAGI----------------EHFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELG--IKRIFVVLNKVD 196 (255)
T ss_pred cEEEEecccch----------------hhhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC--CceEEEEEeecc
Confidence 6778887 443 33344556789987777766655555443 334555543 289999999999
Q ss_pred ccCccccHHHHHhCcccccCCCeEEEEeCChh
Q 006928 215 LMDKGTNALEVLEGRSYRLQHPWVGIVNRSQA 246 (625)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~ 246 (625)
.. . ..+......+++.+.++.+.+.+
T Consensus 197 e~--e----~~~~~~~~~~~~~vlg~iP~d~~ 222 (255)
T COG3640 197 EE--E----ELLRELAEELGLEVLGVIPYDPE 222 (255)
T ss_pred ch--h----HHHHhhhhccCCeEEEEccCCHH
Confidence 65 1 11222234556667788877653
No 365
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.18 E-value=0.0008 Score=71.12 Aligned_cols=134 Identities=19% Similarity=0.296 Sum_probs=80.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
.-...+|-.--.|||||-.+|+... |..+.+ ++++.+-+.++..
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t------~~~~~R------------------------------em~~Q~LDsMdiE 52 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELT------GGLSER------------------------------EMRAQVLDSMDIE 52 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHh------cCcChH------------------------------HHHHHhhhhhhhH
Confidence 4456778888899999999998653 211111 2222222222222
Q ss_pred hCCCCccccccEEEEEecC--CCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 115 TGKSKQISNIPIQLSIYSP--NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~--~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
..++-.+-...+++..... ....|.||||||-.+.+.. |.+.+..+...+| |++|++++..+..
T Consensus 53 RERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYE-------------VSRSLAACEGalL-vVDAsQGveAQTl 118 (603)
T COG0481 53 RERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYE-------------VSRSLAACEGALL-VVDASQGVEAQTL 118 (603)
T ss_pred hhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEE-------------ehhhHhhCCCcEE-EEECccchHHHHH
Confidence 2223334455666655543 3467899999997765443 3344555666666 4567777777765
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
...-..++. +.-+|-||||+|+-...
T Consensus 119 AN~YlAle~-~LeIiPViNKIDLP~Ad 144 (603)
T COG0481 119 ANVYLALEN-NLEIIPVLNKIDLPAAD 144 (603)
T ss_pred HHHHHHHHc-CcEEEEeeecccCCCCC
Confidence 444333443 67899999999996543
No 366
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.13 E-value=0.0012 Score=69.65 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=44.8
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
...+.||||||-.+.... |.+-++=.|.++|+|++....+ .+.-+ ..+..-..|.+-|+|+||+|
T Consensus 67 ~~~INIvDTPGHADFGGE-------------VERvl~MVDgvlLlVDA~EGpM-PQTrF-VlkKAl~~gL~PIVVvNKiD 131 (603)
T COG1217 67 GTRINIVDTPGHADFGGE-------------VERVLSMVDGVLLLVDASEGPM-PQTRF-VLKKALALGLKPIVVINKID 131 (603)
T ss_pred CeEEEEecCCCcCCccch-------------hhhhhhhcceEEEEEEcccCCC-Cchhh-hHHHHHHcCCCcEEEEeCCC
Confidence 367899999996554322 2333344788888766554433 33333 33333445889999999999
Q ss_pred ccCccc
Q 006928 215 LMDKGT 220 (625)
Q Consensus 215 ~~~~~~ 220 (625)
.-+..-
T Consensus 132 rp~Arp 137 (603)
T COG1217 132 RPDARP 137 (603)
T ss_pred CCCCCH
Confidence 876553
No 367
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0017 Score=69.61 Aligned_cols=112 Identities=28% Similarity=0.496 Sum_probs=67.8
Q ss_pred CCCeEE-EECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 34 ALPSVA-VVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 34 ~lP~Iv-vvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
..|.|+ |||++|.|||||+.+|+.+ + . .. + .+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr-~-----t---k~--------t------------------------------i~ 99 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRR-F-----T---KQ--------T------------------------------ID 99 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHH-H-----H---Hh--------h------------------------------hh
Confidence 466766 9999999999999999865 3 0 00 0 11
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
.+.| ||. +.+.....+||...|. . + ..|+ ...+-+|.+ |++++++-.+.....
T Consensus 100 ~i~G--------PiT--vvsgK~RRiTflEcp~--D---------l----~~mi-DvaKIaDLV-lLlIdgnfGfEMETm 152 (1077)
T COG5192 100 EIRG--------PIT--VVSGKTRRITFLECPS--D---------L----HQMI-DVAKIADLV-LLLIDGNFGFEMETM 152 (1077)
T ss_pred ccCC--------ceE--EeecceeEEEEEeChH--H---------H----HHHH-hHHHhhhee-EEEeccccCceehHH
Confidence 2223 121 2233446789988884 1 1 1221 122346754 446678776655433
Q ss_pred HHHHHHhCCCCC-ceEEEeccCcccCccc
Q 006928 193 IKLAREVDPTGE-RTFGVLTKLDLMDKGT 220 (625)
Q Consensus 193 l~l~~~~d~~~~-rti~VltK~D~~~~~~ 220 (625)
+++.-+-+.|. |++||+|..|+....+
T Consensus 153 -EFLnil~~HGmPrvlgV~ThlDlfk~~s 180 (1077)
T COG5192 153 -EFLNILISHGMPRVLGVVTHLDLFKNPS 180 (1077)
T ss_pred -HHHHHHhhcCCCceEEEEeecccccChH
Confidence 35555556664 5889999999987644
No 368
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.0045 Score=56.57 Aligned_cols=127 Identities=17% Similarity=0.268 Sum_probs=78.3
Q ss_pred HHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCC
Q 006928 15 QRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPR 94 (625)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~ 94 (625)
.++++.+|-- =+...+++.|--||||||||+.|=.-.. +.-.+|--| |
T Consensus 8 ~~VLq~LgL~--------kK~gKllFlGLDNAGKTTLLHMLKdDrl---~qhvPTlHP-------T-------------- 55 (193)
T KOG0077|consen 8 SSVLQFLGLY--------KKFGKLLFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHP-------T-------------- 55 (193)
T ss_pred HHHHHHHHHh--------ccCceEEEEeecCCchhhHHHHHccccc---cccCCCcCC-------C--------------
Confidence 3455566632 2566899999999999999999975432 111233333 1
Q ss_pred CccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCC
Q 006928 95 KKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPS 174 (625)
Q Consensus 95 ~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~ 174 (625)
.+.+. | .....|-+|+-| ..+.+...++|+..+|
T Consensus 56 ----------------SE~l~--------------I---g~m~ftt~DLGG-------------H~qArr~wkdyf~~v~ 89 (193)
T KOG0077|consen 56 ----------------SEELS--------------I---GGMTFTTFDLGG-------------HLQARRVWKDYFPQVD 89 (193)
T ss_pred ----------------hHHhe--------------e---cCceEEEEcccc-------------HHHHHHHHHHHHhhhc
Confidence 11110 1 125678999999 3445788899999999
Q ss_pred EEEEEEecCCCccc-cH-HHHH-HHHHhCCCCCceEEEeccCcccCcc
Q 006928 175 CIILAISPANQDIA-TS-DAIK-LAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 175 ~iIl~v~~a~~d~~-~~-~~l~-l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+|+..|+.+....- .+ ..++ +.....-...|.++..||+|....-
T Consensus 90 ~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 90 AIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred eeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 98887766553211 11 1111 1111112468899999999987654
No 369
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0026 Score=69.06 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=76.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+.-..+|+|.-.||||||+-.|+-. .-+.+.+..+..--+-. .-+...-.|++.+...+
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLyd-Lg~i~~~~m~kl~~es~-~~Gk~Sf~yawiLDeT~------------------- 234 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYD-LGEISSRSMHKLERESK-NLGKSSFAYAWILDETK------------------- 234 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHH-hcCccHHHHHHHHHHHH-hcCCcceeeeEEeccch-------------------
Confidence 3446899999999999999998743 32222211110000000 00000011222221111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc-----
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA----- 188 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~----- 188 (625)
..+..||+-+.-.-.+. ++-..+||+|.||.-. .+.+|+.. +..+|..||||+.....|+
T Consensus 235 -eERerGvTm~v~~~~fe-s~~~~~tliDaPGhkd------------Fi~nmi~g-~sqaD~avLvvd~s~~~FE~gfd~ 299 (603)
T KOG0458|consen 235 -EERERGVTMDVKTTWFE-SKSKIVTLIDAPGHKD------------FIPNMISG-ASQADVAVLVVDASTGEFESGFDP 299 (603)
T ss_pred -hhhhcceeEEeeeEEEe-cCceeEEEecCCCccc------------cchhhhcc-ccccceEEEEEECCcchhhhccCC
Confidence 01223455444444343 5557899999999221 22334332 3468888886654433222
Q ss_pred ---cHHHHHHHHHhCCCCCceEEEeccCcccCcccc
Q 006928 189 ---TSDAIKLAREVDPTGERTFGVLTKLDLMDKGTN 221 (625)
Q Consensus 189 ---~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~ 221 (625)
+.+...+++-+. -...|+++||+|+++=..+
T Consensus 300 ~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 300 GGQTREHALLLRSLG--ISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred CCchHHHHHHHHHcC--cceEEEEeecccccCccHH
Confidence 122333555544 3567889999999975443
No 370
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0014 Score=67.10 Aligned_cols=143 Identities=29% Similarity=0.426 Sum_probs=78.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccc----cccccEEEEEeecCCCCcceeec-cCCCCccCChHHHH--HHHHH
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI----VTRRPLVLQLHQTEGGTDYAEFL-HAPRKKFTDFAAVR--KEISD 109 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~----~Tr~p~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~i~~ 109 (625)
+++|+|.--+|||||+--|+... |--|.|- .=|.|-+++-.+|.. .--+.+ ......+.+.++.+ ++|.
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQge-LDnG~GrARln~FRh~HEiqsGrTSs--is~evlGFd~~g~vVNY~~~~taEEi~- 244 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGE-LDNGNGRARLNIFRHPHEIQSGRTSS--ISNEVLGFDNRGKVVNYAQNMTAEEIV- 244 (591)
T ss_pred EEEEecCcccCcceeeeeeeccc-ccCCCCeeeeehhcchhhhccCcccc--cchhcccccccccccchhhcccHHHHH-
Confidence 79999999999999999998665 4444442 224555554222210 000000 11112222333221 1111
Q ss_pred HHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC--cc
Q 006928 110 ETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ--DI 187 (625)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~--d~ 187 (625)
.....-+||+|+.|-.+-.. ..|..+ ..| .||+..|+| +|+. .+
T Consensus 245 ----------------------e~SSKlvTfiDLAGh~kY~~--------TTi~gL-tgY--~Ph~A~LvV-sA~~Gi~~ 290 (591)
T KOG1143|consen 245 ----------------------EKSSKLVTFIDLAGHAKYQK--------TTIHGL-TGY--TPHFACLVV-SADRGITW 290 (591)
T ss_pred ----------------------hhhcceEEEeecccchhhhe--------eeeeec-ccC--CCceEEEEE-EcCCCCcc
Confidence 11123479999999433110 000111 223 367766644 5554 45
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCcccCccc
Q 006928 188 ATSDAIKLAREVDPTGERTFGVLTKLDLMDKGT 220 (625)
Q Consensus 188 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 220 (625)
++.+.+.++..+ ..|.++++||+|+.++.+
T Consensus 291 tTrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 291 TTREHLGLIAAL---NIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred ccHHHHHHHHHh---CCCeEEEEEeeccccchh
Confidence 677777777765 479999999999998743
No 371
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=97.06 E-value=0.62 Score=54.31 Aligned_cols=22 Identities=45% Similarity=0.723 Sum_probs=19.8
Q ss_pred ECCCCCCHHHHHHHhhCCCcccc
Q 006928 41 VGGQSSGKSSVLESVVGRDFLPR 63 (625)
Q Consensus 41 vG~~saGKSSllnaL~g~~~lP~ 63 (625)
+|.||+|||||||.|+|..| ++
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~ 22 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DV 22 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-cc
Confidence 59999999999999999986 44
No 372
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.05 E-value=0.00049 Score=71.30 Aligned_cols=31 Identities=32% Similarity=0.389 Sum_probs=26.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccc
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS 65 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~ 65 (625)
.-++.|||-||+|||||||+|.....-|+|.
T Consensus 252 sIrvGViG~PNVGKSSvINsL~~~k~C~vg~ 282 (435)
T KOG2484|consen 252 SIRVGIIGYPNVGKSSVINSLKRRKACNVGN 282 (435)
T ss_pred ceEeeeecCCCCChhHHHHHHHHhccccCCC
Confidence 4489999999999999999999887755554
No 373
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=96.96 E-value=0.002 Score=68.97 Aligned_cols=28 Identities=46% Similarity=0.698 Sum_probs=25.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
.+--.|+|+|+||+|||||||.|.|.+|
T Consensus 35 l~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 35 LSYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred cceeEEEEecCcccchHHHHHHHhccCh
Confidence 5666899999999999999999999987
No 374
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=96.94 E-value=0.0024 Score=57.57 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=43.4
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhC---CCCCceEEEec
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVD---PTGERTFGVLT 211 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d---~~~~rti~Vlt 211 (625)
..+|.||||.| ++.+..+---|.+.+|..+|+.+ -+..-+-+....+.+++. ....-.++|-|
T Consensus 61 ra~L~IWDTAG-------------QErfHALGPIYYRgSnGalLVyD-ITDrdSFqKVKnWV~Elr~mlGnei~l~IVGN 126 (218)
T KOG0088|consen 61 RADLHIWDTAG-------------QERFHALGPIYYRGSNGALLVYD-ITDRDSFQKVKNWVLELRTMLGNEIELLIVGN 126 (218)
T ss_pred eeeeeeeeccc-------------hHhhhccCceEEeCCCceEEEEe-ccchHHHHHHHHHHHHHHHHhCCeeEEEEecC
Confidence 36899999999 33344444457889998877553 332222333333444443 33455778999
Q ss_pred cCcccCc
Q 006928 212 KLDLMDK 218 (625)
Q Consensus 212 K~D~~~~ 218 (625)
|+|+-..
T Consensus 127 KiDLEee 133 (218)
T KOG0088|consen 127 KIDLEEE 133 (218)
T ss_pred cccHHHh
Confidence 9998654
No 375
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.88 E-value=0.0065 Score=61.92 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
....|.++|.+||||||||+.|.+.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999875
No 376
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=96.76 E-value=0.00067 Score=59.24 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=51.2
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc-HHHHHHHHHhCCCCCceEEEeccC
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT-SDAIKLAREVDPTGERTFGVLTKL 213 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~-~~~l~l~~~~d~~~~rti~VltK~ 213 (625)
..|.+|||.| ++.++..+-.|.+++|+++|+..-+|. .+.+ +.|+.-+.++.....-...+-||+
T Consensus 47 vklqiwdtag-------------qerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~ 113 (192)
T KOG0083|consen 47 VKLQIWDTAG-------------QERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKC 113 (192)
T ss_pred EEEEEeeccc-------------hHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhcccc
Confidence 4689999999 677789999999999998887665553 3433 334544555555556678889999
Q ss_pred cccCc
Q 006928 214 DLMDK 218 (625)
Q Consensus 214 D~~~~ 218 (625)
|+...
T Consensus 114 d~a~e 118 (192)
T KOG0083|consen 114 DLAHE 118 (192)
T ss_pred ccchh
Confidence 99764
No 377
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=96.63 E-value=0.0014 Score=62.64 Aligned_cols=116 Identities=25% Similarity=0.328 Sum_probs=67.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.++|||+-.+|||+||-..+-.. ||.+ ..||+.-
T Consensus 6 K~VvVGDga~GKT~ll~~~t~~~-fp~~-----yvPTVFd---------------------------------------- 39 (198)
T KOG0393|consen 6 KCVVVGDGAVGKTCLLISYTTNA-FPEE-----YVPTVFD---------------------------------------- 39 (198)
T ss_pred EEEEECCCCcCceEEEEEeccCc-Cccc-----ccCeEEc----------------------------------------
Confidence 68999999999999999998765 4544 3454331
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC-Cccc--cHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN-QDIA--TSDAI 193 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~-~d~~--~~~~l 193 (625)
+....+.+.......|.++||.|=.+ . +.++-+ +| .++|.+++|..-.+ ..+. ...|+
T Consensus 40 ------nys~~v~V~dg~~v~L~LwDTAGqed--------Y--DrlRpl--sY-~~tdvfl~cfsv~~p~S~~nv~~kW~ 100 (198)
T KOG0393|consen 40 ------NYSANVTVDDGKPVELGLWDTAGQED--------Y--DRLRPL--SY-PQTDVFLLCFSVVSPESFENVKSKWI 100 (198)
T ss_pred ------cceEEEEecCCCEEEEeeeecCCCcc--------c--cccccc--CC-CCCCEEEEEEEcCChhhHHHHHhhhh
Confidence 11111222111224589999999221 1 223322 33 56787766432111 1122 23344
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.-.+..-| +.|+|+|.||.|+.+.
T Consensus 101 pEi~~~cp-~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 101 PEIKHHCP-NVPIILVGTKADLRDD 124 (198)
T ss_pred HHHHhhCC-CCCEEEEeehHHhhhC
Confidence 34444444 6999999999999854
No 378
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.60 E-value=0.026 Score=55.41 Aligned_cols=55 Identities=25% Similarity=0.390 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEecCC-CccccH-HHHHHHHHhCCCCCceEEEeccCc
Q 006928 159 VEDIENMVRSYVEKPSCIILAISPAN-QDIATS-DAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 159 ~~~i~~~v~~yi~~~~~iIl~v~~a~-~d~~~~-~~l~l~~~~d~~~~rti~VltK~D 214 (625)
+++=-.+++..+.+|. |||+=-|.. -|..+. ..+.+.+++......|++++|.=.
T Consensus 147 qqQRVAIARAL~~~P~-iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 147 QQQRVAIARALINNPK-IILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred HHHHHHHHHHHhcCCC-eEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 3444566777888888 566544432 255444 345677777666677999999833
No 379
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.027 Score=57.84 Aligned_cols=149 Identities=18% Similarity=0.211 Sum_probs=81.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCc-ccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~-lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
.+-+.+-+|+---||||||-+|+--.- ++.+ ++..- .-..-.+...-...||.-+.+-++.+++
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eD-----------Qla~l----~~dS~~~~t~g~~~D~ALLvDGL~AERE 69 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYED-----------QLASL----ERDSKRKGTQGEKIDLALLVDGLEAERE 69 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHH-----------HHHHH----hcccccccCCCCccchhhhhhhhHHHHh
Confidence 466899999999999999999985321 0100 00000 0000001112233566666666665543
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
.|++-++-.. .++-....+.+.|||| -++..++|+-.. .-+|..|++| +|...+-.+.-
T Consensus 70 ------QGITIDVAYR-yFsT~KRkFIiADTPG------------HeQYTRNMaTGA-STadlAIlLV-DAR~Gvl~QTr 128 (431)
T COG2895 70 ------QGITIDVAYR-YFSTEKRKFIIADTPG------------HEQYTRNMATGA-STADLAILLV-DARKGVLEQTR 128 (431)
T ss_pred ------cCceEEEEee-ecccccceEEEecCCc------------HHHHhhhhhccc-ccccEEEEEE-ecchhhHHHhH
Confidence 2333333322 3344457899999999 234445554432 4577777755 55555544322
Q ss_pred --HHHHHHhCCCCCc-eEEEeccCcccCcccc
Q 006928 193 --IKLAREVDPTGER-TFGVLTKLDLMDKGTN 221 (625)
Q Consensus 193 --l~l~~~~d~~~~r-ti~VltK~D~~~~~~~ 221 (625)
.-++.. .|.| .++.+||+|+++-..+
T Consensus 129 RHs~I~sL---LGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 129 RHSFIASL---LGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred HHHHHHHH---hCCcEEEEEEeeecccccCHH
Confidence 113332 3566 4566999999987654
No 380
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.41 E-value=0.0033 Score=65.00 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
-|.+||-||+||||+||.|-...+
T Consensus 309 SVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 309 SVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred eeeeecCCCCchHHHHHHHhhccc
Confidence 477899999999999999987754
No 381
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.007 Score=62.65 Aligned_cols=77 Identities=31% Similarity=0.332 Sum_probs=46.0
Q ss_pred CCCCcEEEeCCCCcccCCCCCCccHHHHHHHHH--HHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEec
Q 006928 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMV--RSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLT 211 (625)
Q Consensus 134 ~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v--~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~Vlt 211 (625)
+..++.||||.|-.. |. ...+++|. .+.+ +||-+|+ |.+++.. +.+...++.+...-.-+-++||
T Consensus 182 e~fdvIIvDTSGRh~-----qe---~sLfeEM~~v~~ai-~Pd~vi~-VmDasiG---Qaae~Qa~aFk~~vdvg~vIlT 248 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHK-----QE---ASLFEEMKQVSKAI-KPDEIIF-VMDASIG---QAAEAQARAFKETVDVGAVILT 248 (483)
T ss_pred cCCcEEEEeCCCchh-----hh---HHHHHHHHHHHhhc-CCCeEEE-EEecccc---HhHHHHHHHHHHhhccceEEEE
Confidence 346899999999553 22 23344442 3344 4787666 5566542 3344455555444445668899
Q ss_pred cCcccCccccHH
Q 006928 212 KLDLMDKGTNAL 223 (625)
Q Consensus 212 K~D~~~~~~~~~ 223 (625)
|+|--.+|.-++
T Consensus 249 KlDGhakGGgAl 260 (483)
T KOG0780|consen 249 KLDGHAKGGGAL 260 (483)
T ss_pred ecccCCCCCcee
Confidence 999877765433
No 382
>PRK01889 GTPase RsgA; Reviewed
Probab=96.26 E-value=0.0077 Score=63.97 Aligned_cols=24 Identities=29% Similarity=0.695 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
.++++|.+|+|||||+|+|.|...
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcc
Confidence 799999999999999999999753
No 383
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=96.24 E-value=0.093 Score=54.06 Aligned_cols=41 Identities=32% Similarity=0.415 Sum_probs=31.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeec
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQT 80 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~ 80 (625)
..|+++|||+.++|||||...|...-+ --.|+|+-+.|.-+
T Consensus 102 ~GPrv~vVGp~d~GKsTl~r~L~nyav------k~gr~Plfv~LDvg 142 (415)
T KOG2749|consen 102 YGPRVMVVGPTDVGKSTLCRILLNYAV------KQGRRPLFVELDVG 142 (415)
T ss_pred cCCEEEEECCCccchHHHHHHHHHHHH------HcCCcceEEEcCCC
Confidence 589999999999999999999986532 12567766665433
No 384
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.025 Score=57.77 Aligned_cols=26 Identities=35% Similarity=0.625 Sum_probs=23.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~ 59 (625)
+.-.|.|+|.||+|||||++-|.+..
T Consensus 187 df~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhccC
Confidence 56689999999999999999999874
No 385
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.034 Score=56.70 Aligned_cols=65 Identities=20% Similarity=0.377 Sum_probs=40.9
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcC---CCEEEEEEecCCCccccHHHHH--HHHHhCCCCCceEEEe
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK---PSCIILAISPANQDIATSDAIK--LAREVDPTGERTFGVL 210 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~---~~~iIl~v~~a~~d~~~~~~l~--l~~~~d~~~~rti~Vl 210 (625)
.+++|||.||- ..+++.-|.. -|..+| |+++.....++.+.. +...+ ....++|+
T Consensus 70 lq~tlvDCPGH----------------asLIRtiiggaqiiDlm~l-viDv~kG~QtQtAEcLiig~~~---c~klvvvi 129 (522)
T KOG0461|consen 70 LQFTLVDCPGH----------------ASLIRTIIGGAQIIDLMIL-VIDVQKGKQTQTAECLIIGELL---CKKLVVVI 129 (522)
T ss_pred ceeEEEeCCCc----------------HHHHHHHHhhhheeeeeeE-EEehhcccccccchhhhhhhhh---ccceEEEE
Confidence 46799999992 2334444433 454444 566666666665432 33322 45788999
Q ss_pred ccCcccCccc
Q 006928 211 TKLDLMDKGT 220 (625)
Q Consensus 211 tK~D~~~~~~ 220 (625)
||+|..+++.
T Consensus 130 nkid~lpE~q 139 (522)
T KOG0461|consen 130 NKIDVLPENQ 139 (522)
T ss_pred eccccccchh
Confidence 9999998764
No 386
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.89 E-value=0.032 Score=58.18 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
.+|-.+|.|--|||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999854
No 387
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=95.88 E-value=0.011 Score=65.97 Aligned_cols=129 Identities=24% Similarity=0.277 Sum_probs=77.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..-.|++|..--.|||||..+|+-.+- -+..|..-.+++-.+ .+ ++ .+..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asng-----vis~rlagkirfld~--------------------re--de---q~rg 57 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNG-----VISSRLAGKIRFLDT--------------------RE--DE---QTRG 57 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhcc-----Eechhhccceeeccc--------------------cc--hh---hhhc
Confidence 456799999999999999999986652 234445544442111 00 00 0111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
++=+..++| + ++ ...-+.|||+||-.+.. ..+.+...=+|.. |+.+++..++..+...
T Consensus 58 itmkss~is-----~-~~--~~~~~nlidspghvdf~-------------sevssas~l~d~a-lvlvdvvegv~~qt~~ 115 (887)
T KOG0467|consen 58 ITMKSSAIS-----L-LH--KDYLINLIDSPGHVDFS-------------SEVSSASRLSDGA-LVLVDVVEGVCSQTYA 115 (887)
T ss_pred eeeeccccc-----c-cc--CceEEEEecCCCccchh-------------hhhhhhhhhcCCc-EEEEeeccccchhHHH
Confidence 211222333 1 11 23457899999976543 2344444556643 3445666667666544
Q ss_pred HHHHHhCCCCCceEEEeccCcc
Q 006928 194 KLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~ 215 (625)
++|+.--.|.+.|.||||+|.
T Consensus 116 -vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 116 -VLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred -HHHHHHHccCceEEEEehhhh
Confidence 778777779999999999994
No 388
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.88 E-value=0.068 Score=56.32 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
.-|.|+|||+..||||||...|++.
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHH
Confidence 5789999999999999999888865
No 389
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.80 E-value=0.0081 Score=57.68 Aligned_cols=27 Identities=33% Similarity=0.684 Sum_probs=23.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~ 64 (625)
.|.|+|..|||||||+|+|+|. ..|.+
T Consensus 34 FvtViGsNGAGKSTlln~iaG~-l~~t~ 60 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGD-LKPTS 60 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCc-cccCC
Confidence 6999999999999999999997 44544
No 390
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=95.79 E-value=0.012 Score=60.74 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=42.2
Q ss_pred CcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhh-cCCCEEEEEEecCCCcccc--HHHHHHHHHhCCCCCceEEEeccC
Q 006928 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV-EKPSCIILAISPANQDIAT--SDAIKLAREVDPTGERTFGVLTKL 213 (625)
Q Consensus 137 ~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi-~~~~~iIl~v~~a~~d~~~--~~~l~l~~~~d~~~~rti~VltK~ 213 (625)
=+.||||-|- +...+..++..+ ++.|...| |++|+..... .+.+-++- ..+.|+|+|+||+
T Consensus 202 lVsfVDtvGH------------EpwLrTtirGL~gqk~dYglL-vVaAddG~~~~tkEHLgi~~---a~~lPviVvvTK~ 265 (527)
T COG5258 202 LVSFVDTVGH------------EPWLRTTIRGLLGQKVDYGLL-VVAADDGVTKMTKEHLGIAL---AMELPVIVVVTKI 265 (527)
T ss_pred EEEEEecCCc------------cHHHHHHHHHHhccccceEEE-EEEccCCcchhhhHhhhhhh---hhcCCEEEEEEec
Confidence 3689999991 223344444444 56887655 5677765432 33333332 3468999999999
Q ss_pred cccCcc
Q 006928 214 DLMDKG 219 (625)
Q Consensus 214 D~~~~~ 219 (625)
|+.+..
T Consensus 266 D~~~dd 271 (527)
T COG5258 266 DMVPDD 271 (527)
T ss_pred ccCcHH
Confidence 999764
No 391
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.76 E-value=0.0082 Score=56.16 Aligned_cols=28 Identities=32% Similarity=0.590 Sum_probs=24.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGS 65 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~ 65 (625)
.++|+|..+||||||||-|.|.. .|.+.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~-~P~~G 54 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE-TPASG 54 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc-CCCCc
Confidence 68999999999999999999986 47553
No 392
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=95.67 E-value=0.013 Score=60.25 Aligned_cols=77 Identities=26% Similarity=0.342 Sum_probs=44.7
Q ss_pred EEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhh-cCCCEEEEEEecCCCccc--cHHHHHHHHHhCCCC
Q 006928 127 QLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV-EKPSCIILAISPANQDIA--TSDAIKLAREVDPTG 203 (625)
Q Consensus 127 ~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi-~~~~~iIl~v~~a~~d~~--~~~~l~l~~~~d~~~ 203 (625)
.++|+.....-+||||+.|-- +.++..+...- .-+|.-.| .+.+|..+- +.+.+.+|-.+ .
T Consensus 210 WvkIce~saKviTFIDLAGHE------------kYLKTTvFGMTGH~PDf~ML-MiGaNaGIiGmTKEHLgLALaL---~ 273 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHE------------KYLKTTVFGMTGHMPDFTML-MIGANAGIIGMTKEHLGLALAL---H 273 (641)
T ss_pred ceeeccccceeEEEEeccchh------------hhhheeeeccccCCCCceEE-EecccccceeccHHhhhhhhhh---c
Confidence 455666555678999999922 11122222222 13675455 345555432 34444444433 5
Q ss_pred CceEEEeccCcccCcc
Q 006928 204 ERTFGVLTKLDLMDKG 219 (625)
Q Consensus 204 ~rti~VltK~D~~~~~ 219 (625)
.|+++|+||+|..+..
T Consensus 274 VPVfvVVTKIDMCPAN 289 (641)
T KOG0463|consen 274 VPVFVVVTKIDMCPAN 289 (641)
T ss_pred CcEEEEEEeeccCcHH
Confidence 8999999999998764
No 393
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.64 E-value=0.011 Score=45.43 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
..++.|+.+|||||++.||.=.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999744
No 394
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.57 E-value=0.011 Score=60.66 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|+.|+||||++..|.+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999875
No 395
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.51 E-value=0.012 Score=53.47 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=25.0
Q ss_pred EEEECCCCCCHHHHHHHhhCCCccccc----cccccccc
Q 006928 38 VAVVGGQSSGKSSVLESVVGRDFLPRG----SGIVTRRP 72 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~~~lP~~----~~~~Tr~p 72 (625)
|+++|+++||||||++.|.+. +|.. ...+||.|
T Consensus 2 i~i~GpsGsGKstl~~~L~~~--~~~~~~~~v~~tTr~p 38 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE--FDPNFGFSVSHTTRKP 38 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc--CCccceecccccccCC
Confidence 789999999999999999975 2322 22356666
No 396
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.079 Score=58.22 Aligned_cols=28 Identities=36% Similarity=0.578 Sum_probs=23.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~ 66 (625)
.+++||..|+|||||++.|.|. +|...|
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~--~~~~~G 376 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGF--LAPTQG 376 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCc--CCCCCc
Confidence 6999999999999999999995 453333
No 397
>PRK13695 putative NTPase; Provisional
Probab=95.43 E-value=0.054 Score=51.24 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|.+++|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998765
No 398
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.40 E-value=0.077 Score=54.59 Aligned_cols=81 Identities=23% Similarity=0.302 Sum_probs=48.9
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHH---HHHHHHHhhc-CCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVED---IENMVRSYVE-KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~---i~~~v~~yi~-~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~Vlt 211 (625)
.++.||||.|--.+..+ +-+. |.+.+...+. .|+-++| |.+|.. -++++.-++.+...-.=+-+|+|
T Consensus 222 ~DvvliDTAGRLhnk~n-----LM~EL~KI~rV~~k~~~~ap~e~ll-vlDAtt---Gqnal~QAk~F~eav~l~GiIlT 292 (340)
T COG0552 222 IDVVLIDTAGRLHNKKN-----LMDELKKIVRVIKKDDPDAPHEILL-VLDATT---GQNALSQAKIFNEAVGLDGIILT 292 (340)
T ss_pred CCEEEEeCcccccCchh-----HHHHHHHHHHHhccccCCCCceEEE-EEEccc---ChhHHHHHHHHHHhcCCceEEEE
Confidence 68999999996654332 3333 3333444443 3454555 555543 35566666666554445678999
Q ss_pred cCcccCccccHHHH
Q 006928 212 KLDLMDKGTNALEV 225 (625)
Q Consensus 212 K~D~~~~~~~~~~~ 225 (625)
|+|-..+|.-+..+
T Consensus 293 KlDgtAKGG~il~I 306 (340)
T COG0552 293 KLDGTAKGGIILSI 306 (340)
T ss_pred ecccCCCcceeeeH
Confidence 99977777655444
No 399
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=95.37 E-value=0.033 Score=51.61 Aligned_cols=55 Identities=27% Similarity=0.347 Sum_probs=36.5
Q ss_pred HHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 162 IENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 162 i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++++.+.+++++|.+++++ +++......+ ..+.+.+...+.|.++|+||+|+.+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~-D~~~~~~~~~-~~l~~~~~~~~~p~iiv~NK~Dl~~~ 56 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVL-DARDPELTRS-RKLERYVLELGKKLLIVLNKADLVPK 56 (156)
T ss_pred HHHHHHHHHhhCCEEEEEe-eCCCCcccCC-HHHHHHHHhCCCcEEEEEEhHHhCCH
Confidence 4677888888999776654 5554332222 22444444457899999999999753
No 400
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=0.1 Score=62.71 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=22.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
..||--+|||.+++||||++..- |.+|
T Consensus 123 yeLPWy~viG~pgsGKTtal~~s-gl~F 149 (1188)
T COG3523 123 YELPWYMVIGPPGSGKTTALLNS-GLQF 149 (1188)
T ss_pred hcCCceEEecCCCCCcchHHhcc-cccC
Confidence 47999999999999999998764 5554
No 401
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.33 E-value=0.13 Score=51.35 Aligned_cols=31 Identities=32% Similarity=0.601 Sum_probs=24.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~T 69 (625)
.+++||+.|||||||+.+|+|. ++-..|.++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl--l~p~~G~i~ 62 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL--LKPSSGEIK 62 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCcceEE
Confidence 5899999999999999999995 333335444
No 402
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=95.30 E-value=0.1 Score=53.36 Aligned_cols=130 Identities=20% Similarity=0.330 Sum_probs=82.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
.|.-||.--.||+||--||+..- ... ...++..++++.+.-++
T Consensus 56 NVGTIGHVDHGKTTLTaAITkil--a~~----------------------------g~A~~~kydeID~APEE------- 98 (449)
T KOG0460|consen 56 NVGTIGHVDHGKTTLTAAITKIL--AEK----------------------------GGAKFKKYDEIDKAPEE------- 98 (449)
T ss_pred cccccccccCCchhHHHHHHHHH--Hhc----------------------------cccccccHhhhhcChhh-------
Confidence 35668999999999999998652 111 11233344444332222
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc-cHHHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA-TSDAIKL 195 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~-~~~~l~l 195 (625)
+..+++-+.-.++..+.. .++.=+|.|| -.+.|++|+-.. .+-|..||+|......+. +.+.+-+
T Consensus 99 kaRGITIn~aHveYeTa~-RhYaH~DCPG------------HADYIKNMItGa-aqMDGaILVVaatDG~MPQTrEHlLL 164 (449)
T KOG0460|consen 99 KARGITINAAHVEYETAK-RHYAHTDCPG------------HADYIKNMITGA-AQMDGAILVVAATDGPMPQTREHLLL 164 (449)
T ss_pred hhccceEeeeeeeeeccc-cccccCCCCc------------hHHHHHHhhcCc-cccCceEEEEEcCCCCCcchHHHHHH
Confidence 234566666677766554 6788999999 244556665443 346777886655444443 3455668
Q ss_pred HHHhCCCCCceEEEeccCcccCcc
Q 006928 196 AREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
|+++.- .++++.+||.|+++..
T Consensus 165 ArQVGV--~~ivvfiNKvD~V~d~ 186 (449)
T KOG0460|consen 165 ARQVGV--KHIVVFINKVDLVDDP 186 (449)
T ss_pred HHHcCC--ceEEEEEecccccCCH
Confidence 999864 5677889999999654
No 403
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=95.22 E-value=0.038 Score=52.81 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.+.|+|+.||||||.-+++...
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h 26 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEH 26 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHH
Confidence 3678999999999999999753
No 404
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.17 E-value=0.041 Score=53.42 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHhhC
Q 006928 38 VAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g 57 (625)
-+|||+|||||||-.+..+.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~ 24 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQ 24 (290)
T ss_pred eEEEcCCCCCccchhhhHHH
Confidence 47899999999999887764
No 405
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.12 E-value=0.14 Score=57.57 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.+++||+.|||||||++.|.|.
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999997
No 406
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.08 E-value=0.02 Score=54.33 Aligned_cols=22 Identities=18% Similarity=0.462 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|+++|||||+++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999985
No 407
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.03 E-value=0.017 Score=52.07 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++|+|..|+|||||+++|.|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999999984
No 408
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.97 E-value=0.17 Score=49.01 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.8
Q ss_pred CCCC--eEEEECCCCCCHHHHHHHhh
Q 006928 33 EALP--SVAVVGGQSSGKSSVLESVV 56 (625)
Q Consensus 33 ~~lP--~IvvvG~~saGKSSllnaL~ 56 (625)
++-+ .+++.|+.++|||||+..|.
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHH
Confidence 4444 49999999999999999998
No 409
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.96 E-value=0.021 Score=56.39 Aligned_cols=27 Identities=33% Similarity=0.568 Sum_probs=23.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~ 64 (625)
.|++||+.|+||||||+.|.|..- |.+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~-p~~ 57 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK-PTS 57 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CCC
Confidence 699999999999999999999863 443
No 410
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.95 E-value=0.019 Score=52.42 Aligned_cols=23 Identities=35% Similarity=0.722 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
|.|.|||..|||||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999865
No 411
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.93 E-value=0.02 Score=54.92 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|.++|||||++++|+|.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999986
No 412
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.88 E-value=0.022 Score=52.76 Aligned_cols=31 Identities=39% Similarity=0.710 Sum_probs=25.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~T 69 (625)
.+.+||..+|||||||++|+|. ++-++|.+|
T Consensus 34 VLgiVGESGSGKtTLL~~is~r--l~p~~G~v~ 64 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGR--LTPDAGTVT 64 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcc--cCCCCCeEE
Confidence 5889999999999999999997 455556544
No 413
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.85 E-value=0.015 Score=54.33 Aligned_cols=22 Identities=32% Similarity=0.788 Sum_probs=17.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
+|+|+|.+|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5899999999999999999865
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.79 E-value=0.33 Score=47.06 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
.++|+|+.++||||++..|.+..+
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~~ 54 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAVL 54 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHHH
Confidence 699999999999999999995433
No 415
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.78 E-value=0.024 Score=55.13 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=27.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC-ccccccccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRP 72 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~-~lP~~~~~~Tr~p 72 (625)
.|+++|.+|||||||++.|.+.. -+......+||.|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 58999999999999999999862 1223334567777
No 416
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.78 E-value=0.021 Score=54.53 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=23.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh---CCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVV---GRD 59 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~---g~~ 59 (625)
+.|.|+|+|.+||||||+.+.|. |..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 57899999999999999999999 654
No 417
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=94.74 E-value=0.18 Score=48.27 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 160 EDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 160 ~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
..++.++..|++++|.++++++ +....... ...+.. ...+.+.++|+||+|+.+..
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD-~~~~~~~~-~~~l~~--~~~~~~~ilV~NK~Dl~~~~ 77 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVD-IFDFPGSL-IPRLRL--FGGNNPVILVGNKIDLLPKD 77 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEE-CccCCCcc-chhHHH--hcCCCcEEEEEEchhcCCCC
Confidence 3468899999999998777554 44321111 111211 12468999999999998643
No 418
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.73 E-value=0.022 Score=53.69 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=28.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 72 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p 72 (625)
-+++.|+.|+|||||+.+|....-+--+.+.+||.|
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~p 41 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKP 41 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCC
Confidence 478899999999999999997753344445677877
No 419
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.67 E-value=0.03 Score=53.81 Aligned_cols=27 Identities=30% Similarity=0.646 Sum_probs=23.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~ 64 (625)
..+|+|+.||||||||.+|+|. +.|.+
T Consensus 29 v~ailGPNGAGKSTlLk~LsGe-l~p~~ 55 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGE-LSPDS 55 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCc-cCCCC
Confidence 6889999999999999999997 55544
No 420
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.56 E-value=0.031 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46799999999999999999973
No 421
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.48 E-value=0.11 Score=49.43 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=25.9
Q ss_pred EEEECCCCCCHHHHHHHhhCCCccccccccccccc
Q 006928 38 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 72 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p 72 (625)
-++||+.||||||||..++. .+|.++|-++-.-
T Consensus 30 Ts~IGPNGAGKSTLLS~~sR--L~~~d~G~i~i~g 62 (252)
T COG4604 30 TSIIGPNGAGKSTLLSMMSR--LLKKDSGEITIDG 62 (252)
T ss_pred eEEECCCCccHHHHHHHHHH--hccccCceEEEee
Confidence 57899999999999998875 4677777555443
No 422
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.45 E-value=0.035 Score=54.22 Aligned_cols=28 Identities=39% Similarity=0.442 Sum_probs=23.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~ 66 (625)
.++++|+.|||||||++.|+|.. |...|
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 56 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL--GPTSG 56 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 58899999999999999999973 43444
No 423
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.45 E-value=0.32 Score=55.47 Aligned_cols=25 Identities=36% Similarity=0.711 Sum_probs=22.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPR 63 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~ 63 (625)
.+++||+.|||||||++.|.|. . |.
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~-~-p~ 402 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGF-L-PY 402 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcC-C-CC
Confidence 6799999999999999999997 3 64
No 424
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.39 E-value=0.036 Score=55.25 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999997
No 425
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.39 E-value=0.033 Score=54.71 Aligned_cols=22 Identities=45% Similarity=0.585 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|+|.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 426
>PRK01889 GTPase RsgA; Reviewed
Probab=94.38 E-value=0.042 Score=58.37 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=33.3
Q ss_pred hcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 170 VEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 170 i~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
+.+.|.+++ |++++.++.....-+++..+...+.+.++|+||+|+++.
T Consensus 110 aANvD~vli-V~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~ 157 (356)
T PRK01889 110 AANVDTVFI-VCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED 157 (356)
T ss_pred EEeCCEEEE-EEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 467887544 666666776654444544455567888999999999875
No 427
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.37 E-value=0.035 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 428
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=94.36 E-value=0.074 Score=51.57 Aligned_cols=50 Identities=14% Similarity=0.338 Sum_probs=31.3
Q ss_pred cCCCEEEEEEecCCCcc----c-cHHHHHHHHHhCCCCCceEEEeccCcccCcccc
Q 006928 171 EKPSCIILAISPANQDI----A-TSDAIKLAREVDPTGERTFGVLTKLDLMDKGTN 221 (625)
Q Consensus 171 ~~~~~iIl~v~~a~~d~----~-~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~ 221 (625)
++.+++|.+......++ . .+.+++...+..| ..+.+..++|+|++..+.+
T Consensus 80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~~d~r 134 (295)
T KOG3886|consen 80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQEDAR 134 (295)
T ss_pred eeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhcccchH
Confidence 46666665443333322 2 2445666666666 4789999999999987653
No 429
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.35 E-value=0.035 Score=54.24 Aligned_cols=29 Identities=21% Similarity=0.420 Sum_probs=24.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~ 66 (625)
..++++|+.|||||||++.|.|. +|..+|
T Consensus 26 g~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G 54 (211)
T cd03264 26 GMYGLLGPNGAGKTTLMRILATL--TPPSSG 54 (211)
T ss_pred CcEEEECCCCCCHHHHHHHHhCC--CCCCcc
Confidence 37999999999999999999996 343444
No 430
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.35 E-value=0.042 Score=52.73 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=26.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC-ccccccccccccc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRP 72 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~-~lP~~~~~~Tr~p 72 (625)
.-|+++|++|||||||+++|.... -+......+||.|
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~ 42 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP 42 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC
Confidence 358999999999999999998752 0112224456665
No 431
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.34 E-value=0.29 Score=54.53 Aligned_cols=35 Identities=34% Similarity=0.547 Sum_probs=27.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccccccccccccc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 72 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p 72 (625)
=+|.+||..|+||||||+.|+|.. .|.+ |.+++-+
T Consensus 30 ~riGLvG~NGaGKSTLLkilaG~~-~~~~-G~i~~~~ 64 (530)
T COG0488 30 ERIGLVGRNGAGKSTLLKILAGEL-EPDS-GEVTRPK 64 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC-cCCC-CeEeecC
Confidence 389999999999999999999985 3544 5455444
No 432
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.29 E-value=0.038 Score=53.79 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
-++++|..||||||+|++|+|.
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl 52 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGL 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999997
No 433
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=94.27 E-value=0.65 Score=49.04 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
.+|-.+|.|--|||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999999999853
No 434
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=94.27 E-value=0.02 Score=59.49 Aligned_cols=135 Identities=18% Similarity=0.302 Sum_probs=77.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
++-.|.|+..-.+||+|.-|+|+-.. | .++.. .+. +.+..++||-.+. +.+
T Consensus 36 kirnigiiahidagktttterily~a------g-~~~s~-----g~v-----------ddgdtvtdfla~e------rer 86 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLA------G-AIHSA-----GDV-----------DDGDTVTDFLAIE------RER 86 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHh------h-hhhcc-----ccc-----------CCCchHHHHHHHH------Hhc
Confidence 45578999999999999999987432 1 01111 011 1223344443332 111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
| -.+..-.+.+. .....+.+|||||-.+.... +.+.++--|.+ ++|.+++.....+. +
T Consensus 87 --g--itiqsaav~fd---wkg~rinlidtpghvdf~le-------------verclrvldga-vav~dasagve~qt-l 144 (753)
T KOG0464|consen 87 --G--ITIQSAAVNFD---WKGHRINLIDTPGHVDFRLE-------------VERCLRVLDGA-VAVFDASAGVEAQT-L 144 (753)
T ss_pred --C--ceeeeeeeecc---cccceEeeecCCCcceEEEE-------------HHHHHHHhcCe-EEEEeccCCcccce-e
Confidence 1 11112222222 23367899999997765443 23333444543 44667766655543 2
Q ss_pred HHHHHhCCCCCceEEEeccCcccCcc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
..-++.+....|.++.+||+|.....
T Consensus 145 tvwrqadk~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 145 TVWRQADKFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred eeehhccccCCchhhhhhhhhhhhhh
Confidence 34577788889999999999987653
No 435
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.27 E-value=0.039 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999999973
No 436
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=94.25 E-value=0.26 Score=57.57 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEecc
Q 006928 159 VEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 159 ~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 212 (625)
+++--.+++..+++++.+| .+.++..+.......+.+.+.. ..+|++++|+
T Consensus 620 QrQRiaLARall~~p~ili--LDEptS~LD~~te~~i~~~l~~-~~~T~IiitH 670 (710)
T TIGR03796 620 QRQRLEIARALVRNPSILI--LDEATSALDPETEKIIDDNLRR-RGCTCIIVAH 670 (710)
T ss_pred HHHHHHHHHHHhhCCCEEE--EECccccCCHHHHHHHHHHHHh-cCCEEEEEec
Confidence 4444567888999999543 4666655554444445454544 3688888877
No 437
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.24 E-value=0.035 Score=58.40 Aligned_cols=32 Identities=19% Similarity=0.468 Sum_probs=25.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~T 69 (625)
-.|+|+|.+||||||++++|++. +|.+..++|
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 36999999999999999999985 465544443
No 438
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.21 E-value=0.039 Score=54.36 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|..|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999997
No 439
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.17 E-value=0.043 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 440
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.16 E-value=0.041 Score=54.13 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 441
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.15 E-value=0.044 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|..|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999973
No 442
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.15 E-value=0.046 Score=52.16 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 443
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.14 E-value=0.042 Score=53.82 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 444
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.14 E-value=0.044 Score=54.39 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|..|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 445
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.12 E-value=0.045 Score=53.27 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 446
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.12 E-value=0.042 Score=53.65 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999997
No 447
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.11 E-value=0.042 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 448
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.08 E-value=0.046 Score=53.52 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 449
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.07 E-value=0.41 Score=54.71 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
-.+++|+.|||||||||+|+|+.
T Consensus 58 l~AimG~SGsGKtTLL~~Lagr~ 80 (613)
T KOG0061|consen 58 LLAIMGPSGSGKTTLLNALAGRL 80 (613)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999984
No 450
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.07 E-value=0.048 Score=51.81 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999997
No 451
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.05 E-value=0.048 Score=54.23 Aligned_cols=28 Identities=25% Similarity=0.534 Sum_probs=23.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~ 66 (625)
.++++|+.|||||||++.|+|.- |...|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 60 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE--RPTSG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 68899999999999999999973 43444
No 452
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.04 E-value=0.051 Score=50.43 Aligned_cols=31 Identities=39% Similarity=0.517 Sum_probs=24.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccccccccc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 68 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~ 68 (625)
..++++|+.++|||||+++|.|.- |...|.+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~i 56 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGEI 56 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccEE
Confidence 378899999999999999999973 4444533
No 453
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=0.18 Score=54.99 Aligned_cols=58 Identities=14% Similarity=0.311 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCC-CCCc-eEEEeccCcccCc
Q 006928 159 VEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDP-TGER-TFGVLTKLDLMDK 218 (625)
Q Consensus 159 ~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~-~~~r-ti~VltK~D~~~~ 218 (625)
++|--.+.+.+++++. |++.+.|+..+.......+.+.+.. .+.| +|.|+-..|++..
T Consensus 492 ekQrvslaRa~lKda~--Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~ 551 (591)
T KOG0057|consen 492 EKQRVSLARAFLKDAP--ILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD 551 (591)
T ss_pred hHHHHHHHHHHhcCCC--eEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc
Confidence 4555677888999998 4445666655544433334444322 3444 4566777777654
No 454
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.00 E-value=0.044 Score=54.50 Aligned_cols=22 Identities=41% Similarity=0.598 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|+|.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999997
No 455
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.99 E-value=0.048 Score=43.06 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 006928 38 VAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~ 58 (625)
|++.|.++|||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 456
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=93.97 E-value=0.21 Score=56.95 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++|+|..|+|||||++.|+|.-
T Consensus 363 ~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 363 TVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 57999999999999999999973
No 457
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=93.96 E-value=0.016 Score=56.86 Aligned_cols=26 Identities=23% Similarity=0.597 Sum_probs=22.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPR 63 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~ 63 (625)
.+++||+.+||||||+|-|+|. +-|.
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~-~~P~ 57 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGF-YKPS 57 (250)
T ss_pred EEEEECCCCCCceeeeeeeccc-ccCC
Confidence 4789999999999999999996 3343
No 458
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.96 E-value=0.04 Score=48.44 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+|+|.++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999864
No 459
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.96 E-value=0.047 Score=53.78 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999973
No 460
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=93.96 E-value=0.076 Score=49.27 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=32.8
Q ss_pred HHHhhcCCCEEEEEEecCCCcccc--HHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 166 VRSYVEKPSCIILAISPANQDIAT--SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 166 v~~yi~~~~~iIl~v~~a~~d~~~--~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+++.++++|.+++ |+++...+.. ....+.+... ..+.|.|+|+||+|++++.
T Consensus 2 ~~~~l~~aD~il~-VvD~~~p~~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~ 55 (157)
T cd01858 2 LYKVIDSSDVVIQ-VLDARDPMGTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTW 55 (157)
T ss_pred hhHhhhhCCEEEE-EEECCCCccccCHHHHHHHHhc-cCCCCEEEEEEchhcCCHH
Confidence 3566789996555 5566654433 2333333332 2358999999999998653
No 461
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.95 E-value=0.051 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++|+|+.|+|||||++.|+|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 48899999999999999999973
No 462
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.95 E-value=0.048 Score=56.68 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=24.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 67 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~ 67 (625)
.++++|+.|||||||++.|.|. +|-..|.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl--~~p~~G~ 63 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNAL--LLPDTGT 63 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCC--CCCCCcE
Confidence 6999999999999999999997 3434454
No 463
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.94 E-value=0.046 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||+++|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999999973
No 464
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.93 E-value=0.052 Score=51.41 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=17.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
..+-++|.|.+|+|||||++++...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4577999999999999999998764
No 465
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=93.93 E-value=0.17 Score=51.74 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=33.9
Q ss_pred HHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 163 ~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+.+.+.++.+|.|++ |.++..+...... .+.+.+ .+.+.|+|+||+|+.++
T Consensus 12 ~~~~~~~l~~aDvVl~-V~Dar~p~~~~~~-~i~~~l--~~kp~IiVlNK~DL~~~ 63 (276)
T TIGR03596 12 RREIKEKLKLVDVVIE-VLDARIPLSSRNP-MIDEIR--GNKPRLIVLNKADLADP 63 (276)
T ss_pred HHHHHHHHhhCCEEEE-EEeCCCCCCCCCh-hHHHHH--CCCCEEEEEEccccCCH
Confidence 3445788899996655 5566554443322 233434 26899999999999754
No 466
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.92 E-value=0.048 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|..|||||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999997
No 467
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.92 E-value=0.05 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 468
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.91 E-value=0.051 Score=53.17 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|+|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999997
No 469
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.90 E-value=0.05 Score=54.52 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.||||||||.+|.|.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4889999999999999999996
No 470
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.89 E-value=0.053 Score=50.78 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999974
No 471
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=93.87 E-value=0.038 Score=55.52 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 160 EDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 160 ~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+....+.+.|++++|.++++....+.+.+.....++...+...+.+.++|+||+|+.+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~ 83 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDE 83 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCH
Confidence 333556667899999877755433233233323233333444678999999999997643
No 472
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.86 E-value=0.25 Score=56.22 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.+++||+.|||||||++.|.|.
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999997
No 473
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.85 E-value=0.055 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|.|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 474
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.83 E-value=0.054 Score=52.77 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=24.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 68 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~ 68 (625)
.++|+|..|+|||||+++|+|.. |..+|.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i 65 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL--EAEEGKI 65 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCCeE
Confidence 68899999999999999999973 4444533
No 475
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.83 E-value=0.056 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|+|||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999974
No 476
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.83 E-value=0.055 Score=54.72 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=24.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 68 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~ 68 (625)
.++++|..|||||||++.|+|. ++-..|-+
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl--~~p~~G~I 57 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGK--LKPNLGKF 57 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--cCCCCceE
Confidence 6999999999999999999997 34444544
No 477
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.83 E-value=0.053 Score=53.20 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=24.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 68 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~ 68 (625)
.++++|+.|||||||++.|+|.. |-.+|-+
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i 44 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD--APDEGDF 44 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--cCCCCCE
Confidence 57899999999999999999973 3344544
No 478
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.81 E-value=0.058 Score=52.36 Aligned_cols=28 Identities=32% Similarity=0.577 Sum_probs=23.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~ 66 (625)
.++++|..|+|||||++.|.|.. |-.+|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLS--PPLAG 55 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 68999999999999999999973 43444
No 479
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.81 E-value=0.055 Score=53.10 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=23.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~ 66 (625)
.++++|..|+|||||++.|+|.. |...|
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G 66 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL--HVESG 66 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCe
Confidence 58899999999999999999973 44445
No 480
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.79 E-value=0.055 Score=53.89 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|..|||||||+..|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5889999999999999999997
No 481
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.79 E-value=0.054 Score=54.02 Aligned_cols=28 Identities=36% Similarity=0.430 Sum_probs=23.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~ 66 (625)
.++++|..|||||||++.|.|.- |-.+|
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G 58 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY--DPTSG 58 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC--CCCCC
Confidence 58999999999999999999973 43444
No 482
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.76 E-value=0.053 Score=54.13 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999973
No 483
>PHA02518 ParA-like protein; Provisional
Probab=93.74 E-value=0.54 Score=45.58 Aligned_cols=38 Identities=13% Similarity=0.299 Sum_probs=25.8
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI 187 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~ 187 (625)
..+++||||||-. ..++...+..+|.+|+.+.+...++
T Consensus 76 ~~d~viiD~p~~~---------------~~~~~~~l~~aD~viip~~ps~~~~ 113 (211)
T PHA02518 76 GYDYVVVDGAPQD---------------SELARAALRIADMVLIPVQPSPFDI 113 (211)
T ss_pred cCCEEEEeCCCCc---------------cHHHHHHHHHCCEEEEEeCCChhhH
Confidence 3689999999943 2345667778998777655554343
No 484
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=0.062 Score=50.80 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 485
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.73 E-value=0.046 Score=51.60 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|.+.|+|..|||||||+++|.+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5778999999999999999999976
No 486
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.72 E-value=0.055 Score=52.76 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999999973
No 487
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.72 E-value=0.059 Score=53.93 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|+|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 488
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.70 E-value=0.056 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999973
No 489
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.69 E-value=0.06 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999997
No 490
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=93.68 E-value=0.32 Score=53.23 Aligned_cols=148 Identities=18% Similarity=0.264 Sum_probs=80.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCC------Cccee-------------ec-cCCCC-
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG------TDYAE-------------FL-HAPRK- 95 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~------~~~~~-------------~~-~~~~~- 95 (625)
-.+++|..+||||||+.-|+|. .|.++|...----.+.+.+..+. ..|-+ |+ +.|..
T Consensus 36 V~aL~GeNGAGKSTLmKiLsGv--~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~ 113 (500)
T COG1129 36 VHALLGENGAGKSTLMKILSGV--YPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRR 113 (500)
T ss_pred EEEEecCCCCCHHHHHHHHhCc--ccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccC
Confidence 4789999999999999999997 35454522111100010000000 01111 11 12222
Q ss_pred -ccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCC
Q 006928 96 -KFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPS 174 (625)
Q Consensus 96 -~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~ 174 (625)
.+.|+..+.....+...++.. . ..++-.+=|+++ -++++-++++....++.
T Consensus 114 ~g~id~~~m~~~A~~~l~~lg~--------------~--~~~~~~v~~Lsi------------aqrQ~VeIArAl~~~ar 165 (500)
T COG1129 114 FGLIDRKAMRRRARELLARLGL--------------D--IDPDTLVGDLSI------------AQRQMVEIARALSFDAR 165 (500)
T ss_pred CCccCHHHHHHHHHHHHHHcCC--------------C--CChhhhhhhCCH------------HHHHHHHHHHHHhcCCC
Confidence 345777776665555443321 0 113333334443 35677778888778888
Q ss_pred EEEEEEecCCCccccHHH---HHHHHHhCCCCCceEEEeccCccc
Q 006928 175 CIILAISPANQDIATSDA---IKLAREVDPTGERTFGVLTKLDLM 216 (625)
Q Consensus 175 ~iIl~v~~a~~d~~~~~~---l~l~~~~d~~~~rti~VltK~D~~ 216 (625)
.+| .+-.+..++..++ +.+.+.+...|.-+|+|=-|+|.+
T Consensus 166 llI--lDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei 208 (500)
T COG1129 166 VLI--LDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEV 208 (500)
T ss_pred EEE--EcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 544 3555555555444 557777888888888877776654
No 491
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.68 E-value=0.24 Score=45.97 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.|++.|+.|+|||||+.++....
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 79999999999999999998763
No 492
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.68 E-value=0.061 Score=53.80 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|.|.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 493
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.68 E-value=0.05 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|..|||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58899999999999999999973
No 494
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.66 E-value=0.062 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999973
No 495
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=93.64 E-value=0.42 Score=55.63 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.+++||+.|||||||++.|+|.
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl 502 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGF 502 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 496
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.64 E-value=0.063 Score=52.84 Aligned_cols=23 Identities=48% Similarity=0.660 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 497
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.62 E-value=0.061 Score=53.53 Aligned_cols=28 Identities=39% Similarity=0.483 Sum_probs=23.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~ 66 (625)
.++|+|+.|||||||++.|.|.. |-..|
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G 56 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY--DVSSG 56 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCC
Confidence 57899999999999999999973 43444
No 498
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.62 E-value=0.061 Score=53.80 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 499
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.61 E-value=0.068 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++|+|..+||||||++.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999997
No 500
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.60 E-value=0.09 Score=47.85 Aligned_cols=52 Identities=23% Similarity=0.356 Sum_probs=34.0
Q ss_pred HHHHhhcCCCEEEEEEecCCCccccH--HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 165 MVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 165 ~v~~yi~~~~~iIl~v~~a~~d~~~~--~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+.+.++++|.+++ |.++....... ...+++.... .+.+.++|+||+|+.++
T Consensus 4 ~~~~~i~~aD~vl~-ViD~~~p~~~~~~~l~~~l~~~~-~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 4 QLWRVVERSDIVVQ-IVDARNPLLFRPPDLERYVKEVD-PRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHHHHhhCCEEEE-EEEccCCcccCCHHHHHHHHhcc-CCCcEEEEEechhcCCH
Confidence 46778899997665 55666555444 2233333332 37899999999999754
Done!