Query 006928
Match_columns 625
No_of_seqs 346 out of 2938
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 12:40:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 1.3E-95 5E-100 822.6 59.9 609 3-624 25-767 (772)
2 3szr_A Interferon-induced GTP- 100.0 3.6E-84 1.2E-88 728.2 53.3 564 15-623 31-607 (608)
3 3t34_A Dynamin-related protein 100.0 7.6E-50 2.6E-54 423.8 31.1 328 4-331 1-331 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 5.6E-47 1.9E-51 400.5 38.5 339 3-349 5-345 (353)
5 1jwy_B Dynamin A GTPase domain 100.0 8.3E-40 2.8E-44 340.3 30.5 309 5-320 1-315 (315)
6 2aka_B Dynamin-1; fusion prote 100.0 1.1E-37 3.6E-42 321.7 34.8 298 4-309 1-298 (299)
7 3ljb_A Interferon-induced GTP- 100.0 1.5E-38 5.1E-43 315.9 21.1 260 328-598 3-271 (271)
8 2j69_A Bacterial dynamin-like 99.8 9E-18 3.1E-22 191.3 30.2 173 34-219 68-246 (695)
9 3iev_A GTP-binding protein ERA 99.7 2.1E-17 7.3E-22 170.6 12.5 240 34-335 9-255 (308)
10 1wf3_A GTP-binding protein; GT 99.7 1.6E-17 5.5E-22 170.7 8.9 235 34-336 6-246 (301)
11 1ega_A Protein (GTP-binding pr 99.6 4.1E-16 1.4E-20 160.4 3.9 208 34-308 7-219 (301)
12 3iby_A Ferrous iron transport 99.5 2E-14 6.7E-19 144.2 8.4 152 35-251 1-157 (256)
13 4dhe_A Probable GTP-binding pr 99.5 1.1E-13 3.7E-18 135.3 10.4 128 34-219 28-160 (223)
14 2xtp_A GTPase IMAP family memb 99.4 2.7E-13 9.2E-18 136.2 11.3 127 34-218 21-154 (260)
15 3t5d_A Septin-7; GTP-binding p 99.4 5.2E-13 1.8E-17 135.3 12.4 137 36-219 9-160 (274)
16 2qpt_A EH domain-containing pr 99.4 2.9E-13 1E-17 150.0 10.8 165 34-218 64-233 (550)
17 3lxw_A GTPase IMAP family memb 99.4 4.5E-13 1.5E-17 133.6 11.1 128 34-218 20-154 (247)
18 1svi_A GTP-binding protein YSX 99.4 4.7E-13 1.6E-17 127.7 10.1 126 34-219 22-150 (195)
19 1mky_A Probable GTP-binding pr 99.4 2.1E-13 7.3E-18 147.6 8.1 162 35-260 1-165 (439)
20 3pqc_A Probable GTP-binding pr 99.4 1.1E-12 3.7E-17 124.8 12.1 124 34-219 22-149 (195)
21 4dcu_A GTP-binding protein ENG 99.4 3.8E-13 1.3E-17 146.4 9.7 126 33-218 21-146 (456)
22 2hjg_A GTP-binding protein ENG 99.4 6.4E-13 2.2E-17 143.7 11.4 124 35-218 3-126 (436)
23 2dyk_A GTP-binding protein; GT 99.4 5.7E-13 1.9E-17 122.6 9.2 120 35-218 1-123 (161)
24 1kao_A RAP2A; GTP-binding prot 99.4 1.4E-12 4.7E-17 120.5 11.7 150 36-256 4-161 (167)
25 3lxx_A GTPase IMAP family memb 99.4 6.8E-13 2.3E-17 131.5 10.3 128 34-219 28-161 (239)
26 3a1s_A Iron(II) transport prot 99.4 5.7E-13 2E-17 133.7 9.5 152 34-255 4-161 (258)
27 1xzp_A Probable tRNA modificat 99.4 7.5E-13 2.6E-17 144.0 10.6 158 36-258 244-402 (482)
28 3i8s_A Ferrous iron transport 99.4 3.3E-13 1.1E-17 136.8 7.2 150 35-250 3-158 (274)
29 3gee_A MNME, tRNA modification 99.4 2.8E-13 9.5E-18 147.3 7.0 123 36-219 234-359 (476)
30 2qu8_A Putative nucleolar GTP- 99.4 2E-12 6.8E-17 127.1 11.6 134 27-218 21-157 (228)
31 3b1v_A Ferrous iron uptake tra 99.4 9E-13 3.1E-17 133.2 9.0 148 35-252 3-155 (272)
32 3geh_A MNME, tRNA modification 99.4 5.4E-13 1.8E-17 144.5 7.6 155 36-256 225-379 (462)
33 3tkl_A RAS-related protein RAB 99.4 3.2E-12 1.1E-16 121.8 12.2 159 34-257 15-175 (196)
34 4dcu_A GTP-binding protein ENG 99.4 2.4E-12 8.2E-17 140.0 12.7 129 34-220 194-323 (456)
35 3bc1_A RAS-related protein RAB 99.4 2.3E-12 7.8E-17 122.3 10.6 69 136-218 70-142 (195)
36 3q72_A GTP-binding protein RAD 99.3 1.2E-12 4E-17 121.3 7.8 117 35-219 2-122 (166)
37 2qtf_A Protein HFLX, GTP-bindi 99.3 5E-12 1.7E-16 132.9 13.4 127 34-219 178-308 (364)
38 2g6b_A RAS-related protein RAB 99.3 1.5E-12 5.2E-17 122.2 8.4 120 34-218 9-131 (180)
39 1g16_A RAS-related protein SEC 99.3 2.4E-12 8.2E-17 119.4 9.6 116 35-217 3-122 (170)
40 2f7s_A C25KG, RAS-related prot 99.3 3.5E-12 1.2E-16 124.0 11.0 69 136-218 84-156 (217)
41 1u8z_A RAS-related protein RAL 99.3 2.7E-12 9.1E-17 118.6 9.7 117 35-218 4-124 (168)
42 2lkc_A Translation initiation 99.3 4.8E-12 1.6E-16 118.5 11.4 116 34-218 7-122 (178)
43 1z08_A RAS-related protein RAB 99.3 1.2E-12 4.2E-17 121.5 7.0 118 35-218 6-126 (170)
44 2bme_A RAB4A, RAS-related prot 99.3 3.1E-12 1.1E-16 120.8 10.0 119 34-218 9-130 (186)
45 2oil_A CATX-8, RAS-related pro 99.3 4.8E-12 1.6E-16 120.6 11.3 119 34-218 24-145 (193)
46 3tw8_B RAS-related protein RAB 99.3 1.5E-12 5.1E-17 122.1 7.7 119 34-218 8-128 (181)
47 2a9k_A RAS-related protein RAL 99.3 4.9E-12 1.7E-16 119.2 11.3 118 34-218 17-138 (187)
48 2hjg_A GTP-binding protein ENG 99.3 4.3E-12 1.5E-16 137.2 12.3 153 5-220 150-303 (436)
49 3clv_A RAB5 protein, putative; 99.3 5.2E-12 1.8E-16 120.7 11.3 65 136-214 93-158 (208)
50 2nzj_A GTP-binding protein REM 99.3 2.4E-12 8.4E-17 120.1 8.6 120 34-218 3-126 (175)
51 1zbd_A Rabphilin-3A; G protein 99.3 2.9E-12 1E-16 123.1 9.3 119 34-218 7-128 (203)
52 2il1_A RAB12; G-protein, GDP, 99.3 3.2E-12 1.1E-16 122.0 9.5 119 34-218 25-146 (192)
53 1z0f_A RAB14, member RAS oncog 99.3 3.6E-12 1.2E-16 119.3 9.5 119 34-218 14-135 (179)
54 2bov_A RAla, RAS-related prote 99.3 5.8E-12 2E-16 121.1 11.1 118 34-218 13-134 (206)
55 1z0j_A RAB-22, RAS-related pro 99.3 3E-12 1E-16 118.8 8.7 118 35-218 6-126 (170)
56 2fn4_A P23, RAS-related protei 99.3 4.7E-12 1.6E-16 118.7 10.0 118 34-218 8-129 (181)
57 3dz8_A RAS-related protein RAB 99.3 2.7E-12 9.1E-17 122.3 8.4 120 34-218 22-143 (191)
58 1c1y_A RAS-related protein RAP 99.3 2.9E-12 1E-16 118.5 8.4 117 36-218 4-123 (167)
59 2fg5_A RAB-22B, RAS-related pr 99.3 1.7E-12 5.8E-17 123.8 6.9 119 34-218 22-143 (192)
60 3cph_A RAS-related protein SEC 99.3 6.4E-12 2.2E-16 121.5 11.0 157 34-259 19-180 (213)
61 2cxx_A Probable GTP-binding pr 99.3 7E-12 2.4E-16 118.7 11.0 124 35-219 1-138 (190)
62 1wms_A RAB-9, RAB9, RAS-relate 99.3 3.9E-12 1.3E-16 119.0 9.0 119 34-218 6-131 (177)
63 3k53_A Ferrous iron transport 99.3 1.8E-12 6.2E-17 131.1 7.1 152 34-255 2-160 (271)
64 2gj8_A MNME, tRNA modification 99.3 5.8E-12 2E-16 118.1 10.1 78 136-218 52-130 (172)
65 2erx_A GTP-binding protein DI- 99.3 2.6E-12 9E-17 119.3 7.6 71 136-219 51-125 (172)
66 2o52_A RAS-related protein RAB 99.3 4.1E-12 1.4E-16 122.1 8.9 119 34-218 24-145 (200)
67 2ce2_X GTPase HRAS; signaling 99.3 3.3E-12 1.1E-16 117.6 7.9 116 36-218 4-123 (166)
68 2gf9_A RAS-related protein RAB 99.3 7.7E-12 2.6E-16 118.8 10.6 118 35-218 22-142 (189)
69 4dsu_A GTPase KRAS, isoform 2B 99.3 1.2E-11 4E-16 117.0 11.8 117 36-219 5-125 (189)
70 4djt_A GTP-binding nuclear pro 99.3 3E-12 1E-16 124.5 7.9 110 136-259 61-173 (218)
71 3oes_A GTPase rhebl1; small GT 99.3 3.5E-12 1.2E-16 122.6 8.2 158 34-258 23-184 (201)
72 2y8e_A RAB-protein 6, GH09086P 99.3 3E-12 1E-16 119.9 7.3 118 36-219 15-135 (179)
73 2ew1_A RAS-related protein RAB 99.3 7E-12 2.4E-16 120.8 10.1 119 34-218 25-146 (201)
74 1ky3_A GTP-binding protein YPT 99.3 3.6E-12 1.2E-16 119.6 7.8 120 34-218 7-133 (182)
75 1lnz_A SPO0B-associated GTP-bi 99.3 7.6E-13 2.6E-17 137.8 3.4 126 35-219 158-290 (342)
76 2wji_A Ferrous iron transport 99.3 6.1E-12 2.1E-16 116.9 9.2 118 36-218 4-123 (165)
77 1z06_A RAS-related protein RAB 99.3 7E-12 2.4E-16 119.1 9.8 119 34-218 19-142 (189)
78 2a5j_A RAS-related protein RAB 99.3 9.4E-12 3.2E-16 118.4 10.7 119 34-218 20-141 (191)
79 4bas_A ADP-ribosylation factor 99.3 7.1E-12 2.4E-16 119.7 9.5 118 33-219 15-143 (199)
80 1ek0_A Protein (GTP-binding pr 99.3 5.8E-12 2E-16 116.7 8.6 117 36-218 4-123 (170)
81 3kkq_A RAS-related protein M-R 99.3 1.4E-11 4.7E-16 116.1 11.3 119 34-218 17-138 (183)
82 1z2a_A RAS-related protein RAB 99.3 3.1E-12 1.1E-16 118.4 6.6 117 35-218 5-124 (168)
83 2efe_B Small GTP-binding prote 99.3 4.3E-12 1.5E-16 119.2 7.6 120 34-219 11-133 (181)
84 2bcg_Y Protein YP2, GTP-bindin 99.3 1.1E-11 3.8E-16 119.4 10.7 119 34-218 7-128 (206)
85 1upt_A ARL1, ADP-ribosylation 99.3 6.8E-12 2.3E-16 116.6 8.7 115 34-219 6-124 (171)
86 3q85_A GTP-binding protein REM 99.3 6.3E-12 2.2E-16 116.6 8.4 71 136-218 51-124 (169)
87 2hup_A RAS-related protein RAB 99.3 1.3E-11 4.5E-16 118.7 10.7 120 34-218 28-149 (201)
88 1r8s_A ADP-ribosylation factor 99.3 1.5E-11 5.2E-16 113.4 10.8 111 37-218 2-116 (164)
89 1x3s_A RAS-related protein RAB 99.3 1.7E-11 5.7E-16 116.6 11.3 119 34-218 14-136 (195)
90 1vg8_A RAS-related protein RAB 99.3 7.6E-12 2.6E-16 120.4 8.6 119 34-218 7-132 (207)
91 3con_A GTPase NRAS; structural 99.3 1.2E-11 4E-16 117.4 9.8 118 34-218 20-141 (190)
92 3t5g_A GTP-binding protein RHE 99.3 1E-11 3.5E-16 116.8 8.8 157 34-257 5-165 (181)
93 1r2q_A RAS-related protein RAB 99.2 1.2E-11 4.2E-16 114.5 9.0 118 35-218 6-126 (170)
94 2hxs_A RAB-26, RAS-related pro 99.2 7.4E-12 2.5E-16 117.2 7.5 119 35-218 6-130 (178)
95 2h57_A ADP-ribosylation factor 99.2 9.8E-12 3.3E-16 118.2 8.4 116 34-218 20-141 (190)
96 2fu5_C RAS-related protein RAB 99.2 3.3E-12 1.1E-16 120.4 5.0 69 136-218 57-128 (183)
97 2p5s_A RAS and EF-hand domain 99.2 1E-11 3.4E-16 119.2 8.3 118 34-217 27-147 (199)
98 1ksh_A ARF-like protein 2; sma 99.2 1.7E-11 5.9E-16 115.9 9.8 115 34-219 17-135 (186)
99 1zj6_A ADP-ribosylation factor 99.2 1.9E-11 6.5E-16 115.8 9.9 114 34-218 15-132 (187)
100 2atv_A RERG, RAS-like estrogen 99.2 1.1E-11 3.9E-16 118.4 7.6 118 34-218 27-147 (196)
101 2yc2_C IFT27, small RAB-relate 99.2 7.3E-12 2.5E-16 120.4 6.2 68 136-217 73-146 (208)
102 3qq5_A Small GTP-binding prote 99.2 1.8E-11 6.2E-16 130.8 9.7 161 34-258 33-193 (423)
103 1zd9_A ADP-ribosylation factor 99.2 1.4E-10 4.9E-15 110.0 14.8 114 35-218 22-139 (188)
104 2wjg_A FEOB, ferrous iron tran 99.2 1E-11 3.5E-16 117.6 6.1 120 34-218 6-127 (188)
105 1h65_A Chloroplast outer envel 99.2 4.2E-11 1.4E-15 120.9 11.0 126 34-219 38-170 (270)
106 2ged_A SR-beta, signal recogni 99.2 5.4E-11 1.8E-15 113.1 11.2 119 34-219 47-172 (193)
107 1moz_A ARL1, ADP-ribosylation 99.2 3.5E-11 1.2E-15 113.2 9.0 114 34-218 17-134 (183)
108 2x77_A ADP-ribosylation factor 99.2 3.3E-11 1.1E-15 114.3 8.5 114 34-218 21-138 (189)
109 2gf0_A GTP-binding protein DI- 99.2 4.5E-11 1.5E-15 114.1 9.3 119 34-218 7-129 (199)
110 3c5c_A RAS-like protein 12; GD 99.2 5E-11 1.7E-15 113.2 9.2 26 35-60 21-46 (187)
111 3llu_A RAS-related GTP-binding 99.2 2.3E-10 7.9E-15 109.3 13.8 120 33-218 18-144 (196)
112 1mky_A Probable GTP-binding pr 99.2 1.7E-10 5.6E-15 124.9 14.3 158 5-219 151-308 (439)
113 3cpj_B GTP-binding protein YPT 99.2 3.6E-11 1.2E-15 117.5 8.3 119 34-218 12-133 (223)
114 2fh5_B SR-beta, signal recogni 99.2 1.1E-10 3.6E-15 113.2 11.4 119 34-219 6-131 (214)
115 2b6h_A ADP-ribosylation factor 99.2 2.3E-11 7.9E-16 116.1 6.5 114 34-218 28-145 (192)
116 2e87_A Hypothetical protein PH 99.2 2.4E-10 8.3E-15 120.1 14.9 126 34-218 166-295 (357)
117 3def_A T7I23.11 protein; chlor 99.2 2.4E-10 8.2E-15 114.8 14.2 125 34-218 35-166 (262)
118 2h17_A ADP-ribosylation factor 99.2 5.5E-11 1.9E-15 112.1 8.9 114 34-218 20-137 (181)
119 3cbq_A GTP-binding protein REM 99.2 8.5E-11 2.9E-15 112.5 10.2 71 136-218 72-145 (195)
120 4a9a_A Ribosome-interacting GT 99.2 2.3E-11 8E-16 127.5 6.5 122 34-216 71-195 (376)
121 2q3h_A RAS homolog gene family 99.2 7.4E-11 2.5E-15 113.0 9.5 117 34-218 19-139 (201)
122 3t1o_A Gliding protein MGLA; G 99.2 3.7E-11 1.3E-15 114.3 7.3 70 136-218 74-150 (198)
123 3l0i_B RAS-related protein RAB 99.1 4.7E-12 1.6E-16 121.5 0.9 119 34-218 32-153 (199)
124 1fzq_A ADP-ribosylation factor 99.1 1.7E-10 5.7E-15 108.9 11.6 115 34-219 15-133 (181)
125 1mh1_A RAC1; GTP-binding, GTPa 99.1 4.7E-11 1.6E-15 112.4 7.6 117 35-218 5-124 (186)
126 2j1l_A RHO-related GTP-binding 99.1 3E-11 1E-15 117.3 5.6 117 35-219 34-154 (214)
127 2gco_A H9, RHO-related GTP-bin 99.1 4.7E-11 1.6E-15 114.7 6.8 116 36-218 26-144 (201)
128 2fv8_A H6, RHO-related GTP-bin 99.1 3.7E-11 1.3E-15 116.0 5.9 116 36-218 26-144 (207)
129 1f6b_A SAR1; gtpases, N-termin 99.1 9.2E-11 3.1E-15 112.5 8.5 113 34-217 24-140 (198)
130 3reg_A RHO-like small GTPase; 99.1 4.1E-11 1.4E-15 114.2 5.9 117 34-218 22-142 (194)
131 1m2o_B GTP-binding protein SAR 99.1 2.6E-10 8.9E-15 108.5 11.4 113 34-217 22-138 (190)
132 2atx_A Small GTP binding prote 99.1 7.9E-11 2.7E-15 112.1 7.8 117 35-218 18-137 (194)
133 1wxq_A GTP-binding protein; st 99.1 1.3E-11 4.4E-16 131.2 2.4 38 37-74 2-39 (397)
134 3r7w_A Gtpase1, GTP-binding pr 99.1 1.4E-10 4.8E-15 119.3 9.9 74 135-217 51-129 (307)
135 3gj0_A GTP-binding nuclear pro 99.1 2.8E-11 9.7E-16 118.0 4.2 69 136-219 64-135 (221)
136 2iwr_A Centaurin gamma 1; ANK 99.1 1.5E-10 5E-15 108.5 8.9 26 35-60 7-32 (178)
137 1nrj_B SR-beta, signal recogni 99.1 3.1E-10 1.1E-14 110.2 10.8 115 34-219 11-136 (218)
138 3th5_A RAS-related C3 botulinu 98.7 9.9E-12 3.4E-16 119.6 0.0 69 136-218 78-149 (204)
139 3bwd_D RAC-like GTP-binding pr 99.1 4.9E-11 1.7E-15 112.0 4.7 117 34-218 7-127 (182)
140 2j0v_A RAC-like GTP-binding pr 99.1 8.6E-11 3E-15 113.6 6.4 116 35-218 9-128 (212)
141 4dkx_A RAS-related protein RAB 99.1 1.2E-10 4.1E-15 113.4 7.1 71 136-219 62-134 (216)
142 3o47_A ADP-ribosylation factor 99.1 2.2E-10 7.6E-15 119.0 9.2 112 37-219 167-282 (329)
143 4gzl_A RAS-related C3 botulinu 99.1 7E-11 2.4E-15 113.9 4.9 118 34-219 29-150 (204)
144 3q3j_B RHO-related GTP-binding 99.1 7E-11 2.4E-15 114.8 4.8 117 34-218 26-146 (214)
145 3ihw_A Centg3; RAS, centaurin, 99.1 2.2E-10 7.4E-15 108.5 7.7 27 34-60 19-45 (184)
146 1m7b_A RND3/RHOE small GTP-bin 99.1 1.6E-10 5.4E-15 109.2 6.6 116 35-218 7-126 (184)
147 2g3y_A GTP-binding protein GEM 99.0 3.5E-10 1.2E-14 109.7 9.0 26 34-59 36-61 (211)
148 3dpu_A RAB family protein; roc 99.0 1.2E-09 4.2E-14 121.1 14.3 107 135-256 97-203 (535)
149 2qag_A Septin-2, protein NEDD5 99.0 3.1E-10 1.1E-14 119.3 8.3 82 136-219 95-190 (361)
150 1gwn_A RHO-related GTP-binding 99.0 2.8E-10 9.6E-15 109.8 7.2 116 35-218 28-147 (205)
151 3izy_P Translation initiation 99.0 6.9E-11 2.4E-15 129.6 2.7 117 34-218 3-119 (537)
152 3sjy_A Translation initiation 99.0 5.2E-10 1.8E-14 119.6 7.3 68 136-219 75-145 (403)
153 1wb1_A Translation elongation 99.0 8.9E-10 3.1E-14 120.2 9.1 66 136-218 73-140 (482)
154 3lvq_E ARF-GAP with SH3 domain 99.0 4.4E-09 1.5E-13 115.6 14.4 114 35-219 322-439 (497)
155 3j2k_7 ERF3, eukaryotic polype 98.9 1.9E-09 6.6E-14 116.3 10.4 144 34-217 16-169 (439)
156 2wkq_A NPH1-1, RAS-related C3 98.9 1.3E-09 4.5E-14 112.7 8.1 117 34-218 154-274 (332)
157 2zej_A Dardarin, leucine-rich 98.9 9.8E-10 3.4E-14 103.8 6.3 68 136-218 56-127 (184)
158 2cjw_A GTP-binding protein GEM 98.9 1.6E-09 5.4E-14 103.3 7.2 25 35-59 6-30 (192)
159 3izq_1 HBS1P, elongation facto 98.9 2.2E-09 7.4E-14 120.3 9.1 147 34-218 166-320 (611)
160 2www_A Methylmalonic aciduria 98.9 4.3E-09 1.5E-13 110.0 10.4 25 34-58 73-97 (349)
161 3p26_A Elongation factor 1 alp 98.9 2E-09 6.8E-14 117.7 8.2 83 120-218 96-186 (483)
162 1s0u_A EIF-2-gamma, translatio 98.9 7.4E-09 2.5E-13 110.8 12.2 68 136-219 81-151 (408)
163 2f9l_A RAB11B, member RAS onco 98.9 6E-09 2.1E-13 99.6 10.2 117 35-218 5-125 (199)
164 3tr5_A RF-3, peptide chain rel 98.9 3.4E-09 1.1E-13 116.6 9.4 137 34-218 12-149 (528)
165 1kk1_A EIF2gamma; initiation o 98.9 9.1E-09 3.1E-13 110.1 12.5 67 136-218 83-152 (410)
166 2ywe_A GTP-binding protein LEP 98.9 4E-09 1.4E-13 117.2 9.5 134 34-218 5-140 (600)
167 3p32_A Probable GTPase RV1496/ 98.9 1.4E-08 4.9E-13 106.4 13.0 25 34-58 78-102 (355)
168 1pui_A ENGB, probable GTP-bind 98.8 4.7E-09 1.6E-13 101.0 8.4 78 137-219 73-153 (210)
169 3cb4_D GTP-binding protein LEP 98.8 3.8E-09 1.3E-13 117.6 7.6 134 34-218 3-138 (599)
170 2h5e_A Peptide chain release f 98.8 1.2E-08 4E-13 112.5 10.6 70 135-219 81-150 (529)
171 2qag_B Septin-6, protein NEDD5 98.8 1.7E-08 5.7E-13 107.2 10.2 134 35-219 42-192 (427)
172 1oix_A RAS-related protein RAB 98.8 1.9E-08 6.5E-13 95.6 9.7 26 35-60 29-54 (191)
173 1zo1_I IF2, translation initia 98.7 2.7E-09 9.1E-14 116.1 3.4 114 34-218 3-118 (501)
174 1g7s_A Translation initiation 98.7 6.4E-09 2.2E-13 115.8 6.5 67 136-217 70-136 (594)
175 1zun_B Sulfate adenylate trans 98.7 3.9E-08 1.3E-12 106.0 12.5 147 34-218 23-172 (434)
176 2qag_C Septin-7; cell cycle, c 98.7 3.8E-08 1.3E-12 104.9 12.0 81 136-218 88-182 (418)
177 2elf_A Protein translation elo 98.7 2.7E-08 9.2E-13 104.7 10.5 62 136-215 60-125 (370)
178 1udx_A The GTP-binding protein 98.7 1E-08 3.4E-13 109.3 7.2 125 35-218 157-284 (416)
179 2c78_A Elongation factor TU-A; 98.7 4.4E-08 1.5E-12 104.6 12.0 66 135-217 74-142 (405)
180 1f60_A Elongation factor EEF1A 98.7 4.6E-09 1.6E-13 113.9 3.1 65 136-217 85-159 (458)
181 1jal_A YCHF protein; nucleotid 98.7 6.6E-09 2.3E-13 108.3 4.1 37 36-72 3-39 (363)
182 1d2e_A Elongation factor TU (E 98.7 6.1E-08 2.1E-12 103.2 11.7 66 135-217 65-133 (397)
183 2xex_A Elongation factor G; GT 98.7 1.4E-08 4.7E-13 115.6 6.9 69 135-218 74-142 (693)
184 2ohf_A Protein OLA1, GTP-bindi 98.6 3.3E-08 1.1E-12 104.0 6.7 106 35-184 22-127 (396)
185 3ec1_A YQEH GTPase; atnos1, at 98.6 9.9E-09 3.4E-13 108.1 2.3 23 36-58 163-185 (369)
186 3c5h_A Glucocorticoid receptor 98.6 1.9E-08 6.6E-13 100.4 4.2 26 33-58 17-51 (255)
187 2p67_A LAO/AO transport system 98.6 1.7E-07 5.9E-12 97.6 11.2 25 34-58 55-79 (341)
188 1dar_A EF-G, elongation factor 98.6 6.2E-08 2.1E-12 110.2 8.5 69 135-218 76-144 (691)
189 2rdo_7 EF-G, elongation factor 98.6 2.4E-07 8.2E-12 105.5 13.1 68 136-218 82-149 (704)
190 2qnr_A Septin-2, protein NEDD5 98.6 6.5E-08 2.2E-12 99.0 7.6 81 136-218 76-170 (301)
191 3mca_A HBS1, elongation factor 98.6 3.4E-09 1.2E-13 118.4 -2.6 66 136-217 255-329 (592)
192 1n0u_A EF-2, elongation factor 98.6 5.2E-08 1.8E-12 113.2 6.8 68 135-217 97-164 (842)
193 1jny_A EF-1-alpha, elongation 98.5 1.2E-07 4.2E-12 102.1 8.7 67 135-218 83-159 (435)
194 3sop_A Neuronal-specific septi 98.5 1.8E-07 6.3E-12 94.0 9.1 82 136-219 60-156 (270)
195 3avx_A Elongation factor TS, e 98.5 1.6E-07 5.5E-12 109.6 9.0 66 135-217 358-426 (1289)
196 2dby_A GTP-binding protein; GD 98.5 9.3E-08 3.2E-12 100.2 6.3 40 36-75 2-41 (368)
197 3h2y_A GTPase family protein; 98.5 4.2E-08 1.4E-12 103.2 3.7 24 36-59 161-184 (368)
198 3r7w_B Gtpase2, GTP-binding pr 98.5 3.3E-07 1.1E-11 93.9 9.5 71 136-218 46-121 (331)
199 1r5b_A Eukaryotic peptide chai 98.5 8E-08 2.7E-12 104.4 5.2 66 135-217 120-195 (467)
200 2qm8_A GTPase/ATPase; G protei 98.4 2.3E-06 8E-11 88.7 14.7 25 34-58 54-78 (337)
201 2j37_W Signal recognition part 98.4 4.2E-07 1.5E-11 98.9 9.3 78 136-225 184-262 (504)
202 3dm5_A SRP54, signal recogniti 98.4 3.4E-06 1.2E-10 89.9 15.0 81 136-227 183-263 (443)
203 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 3.3E-07 1.1E-11 96.7 5.9 40 35-74 20-60 (392)
204 2dy1_A Elongation factor G; tr 98.3 1E-06 3.5E-11 99.8 10.4 132 34-216 8-139 (665)
205 1yrb_A ATP(GTP)binding protein 98.3 9.3E-07 3.2E-11 88.1 8.9 24 33-56 12-35 (262)
206 3vqt_A RF-3, peptide chain rel 98.3 4.4E-07 1.5E-11 100.3 6.8 137 35-218 31-167 (548)
207 1tq4_A IIGP1, interferon-induc 98.3 2.8E-06 9.4E-11 90.2 11.5 121 34-216 68-188 (413)
208 2wsm_A Hydrogenase expression/ 98.2 3.2E-06 1.1E-10 81.8 9.1 25 34-58 29-53 (221)
209 4fn5_A EF-G 1, elongation fact 98.2 8.5E-07 2.9E-11 101.3 5.6 137 34-218 12-152 (709)
210 3kl4_A SRP54, signal recogniti 98.2 4E-06 1.4E-10 89.4 9.9 84 135-227 179-262 (433)
211 1puj_A YLQF, conserved hypothe 98.1 2.4E-06 8.3E-11 86.3 6.6 26 35-60 120-145 (282)
212 3j25_A Tetracycline resistance 98.1 1.1E-06 3.7E-11 99.1 4.2 70 135-219 66-135 (638)
213 1f5n_A Interferon-induced guan 98.1 4.6E-06 1.6E-10 92.3 8.7 27 34-60 37-63 (592)
214 2v3c_C SRP54, signal recogniti 98.1 1.4E-05 4.7E-10 85.6 11.1 78 135-225 180-260 (432)
215 3cnl_A YLQF, putative uncharac 97.9 9E-06 3.1E-10 81.2 5.4 25 36-60 100-124 (262)
216 1rj9_A FTSY, signal recognitio 97.9 5.2E-05 1.8E-09 77.3 10.6 87 136-227 185-271 (304)
217 2hf9_A Probable hydrogenase ni 97.8 1.7E-05 5.7E-10 76.9 5.8 26 34-59 37-62 (226)
218 2yhs_A FTSY, cell division pro 97.8 0.00022 7.7E-09 76.7 13.9 83 136-227 376-462 (503)
219 3e70_C DPA, signal recognition 97.8 0.00014 4.6E-09 75.0 11.7 81 136-227 212-292 (328)
220 1j8m_F SRP54, signal recogniti 97.7 0.00016 5.4E-09 73.5 10.5 81 136-226 181-262 (297)
221 2px0_A Flagellar biosynthesis 97.7 0.00032 1.1E-08 71.2 12.6 79 136-227 183-263 (296)
222 1vma_A Cell division protein F 97.6 5.3E-05 1.8E-09 77.2 6.5 83 135-227 186-273 (306)
223 2xxa_A Signal recognition part 97.6 9.2E-05 3.1E-09 79.2 7.3 79 136-226 184-263 (433)
224 3q5d_A Atlastin-1; G protein, 97.5 2.5E-05 8.7E-10 83.5 2.0 25 34-58 66-90 (447)
225 1zu4_A FTSY; GTPase, signal re 97.5 0.00077 2.6E-08 69.1 13.0 84 135-227 191-278 (320)
226 2ffh_A Protein (FFH); SRP54, s 97.4 0.00028 9.5E-09 75.0 7.8 79 136-226 181-260 (425)
227 2og2_A Putative signal recogni 97.2 0.0011 3.9E-08 68.7 10.6 86 137-227 242-327 (359)
228 3b9q_A Chloroplast SRP recepto 97.2 0.00099 3.4E-08 67.7 9.2 86 137-227 185-270 (302)
229 1ls1_A Signal recognition part 97.0 0.0014 4.7E-08 66.5 7.8 81 136-227 181-261 (295)
230 1t9h_A YLOQ, probable GTPase E 96.2 0.0016 5.5E-08 66.2 2.6 23 37-59 175-197 (307)
231 4dzz_A Plasmid partitioning pr 95.8 0.024 8.3E-07 53.3 8.5 66 136-216 76-143 (206)
232 4ido_A Atlastin-1; GTPase, GTP 95.5 0.014 4.7E-07 62.1 5.8 22 35-56 67-88 (457)
233 3ney_A 55 kDa erythrocyte memb 95.4 0.0062 2.1E-07 57.6 2.5 35 36-72 20-58 (197)
234 1ex7_A Guanylate kinase; subst 95.1 0.0085 2.9E-07 56.1 2.3 35 38-72 4-40 (186)
235 1u0l_A Probable GTPase ENGC; p 95.0 0.011 3.6E-07 60.0 3.1 67 137-218 64-130 (301)
236 3tau_A Guanylate kinase, GMP k 94.8 0.015 5E-07 55.4 3.2 23 36-58 9-31 (208)
237 1kgd_A CASK, peripheral plasma 94.7 0.012 4.1E-07 54.6 2.5 22 37-58 7-28 (180)
238 3tif_A Uncharacterized ABC tra 94.7 0.015 5.2E-07 56.6 3.2 23 37-59 33-55 (235)
239 1lvg_A Guanylate kinase, GMP k 94.7 0.012 4.2E-07 55.5 2.5 22 37-58 6-27 (198)
240 2rcn_A Probable GTPase ENGC; Y 94.7 0.016 5.5E-07 60.0 3.4 23 37-59 217-239 (358)
241 1ye8_A Protein THEP1, hypothet 94.6 0.015 5E-07 54.1 2.8 22 37-58 2-23 (178)
242 1zcb_A G alpha I/13; GTP-bindi 94.6 0.03 1E-06 58.2 5.4 70 135-217 200-282 (362)
243 4g1u_C Hemin import ATP-bindin 94.6 0.019 6.5E-07 57.0 3.6 23 37-59 39-61 (266)
244 1znw_A Guanylate kinase, GMP k 94.5 0.015 5E-07 55.3 2.5 22 37-58 22-43 (207)
245 1g6h_A High-affinity branched- 94.5 0.018 6.2E-07 56.8 3.2 23 37-59 35-57 (257)
246 1sgw_A Putative ABC transporte 94.5 0.019 6.4E-07 55.1 3.2 23 37-59 37-59 (214)
247 1mv5_A LMRA, multidrug resista 94.5 0.021 7.3E-07 55.8 3.7 23 37-59 30-52 (243)
248 2pt7_A CAG-ALFA; ATPase, prote 94.5 0.017 5.9E-07 59.2 3.2 28 37-66 173-200 (330)
249 2pcj_A ABC transporter, lipopr 94.5 0.017 5.9E-07 55.7 2.9 23 37-59 32-54 (224)
250 1zp6_A Hypothetical protein AT 94.4 0.018 6.2E-07 53.5 2.9 22 37-58 11-32 (191)
251 2gza_A Type IV secretion syste 94.4 0.02 6.7E-07 59.6 3.2 28 37-66 177-204 (361)
252 2onk_A Molybdate/tungstate ABC 94.3 0.021 7.1E-07 55.8 3.2 24 36-59 25-48 (240)
253 1b0u_A Histidine permease; ABC 94.3 0.021 7.1E-07 56.6 3.2 23 37-59 34-56 (262)
254 2pze_A Cystic fibrosis transme 94.3 0.021 7.2E-07 55.3 3.2 23 37-59 36-58 (229)
255 3gfo_A Cobalt import ATP-bindi 94.3 0.021 7.2E-07 57.0 3.2 23 37-59 36-58 (275)
256 3tr0_A Guanylate kinase, GMP k 94.3 0.017 5.9E-07 54.3 2.4 22 37-58 9-30 (205)
257 2oap_1 GSPE-2, type II secreti 94.3 0.02 6.8E-07 62.4 3.2 30 38-69 263-292 (511)
258 1u0l_A Probable GTPase ENGC; p 94.3 0.025 8.6E-07 57.2 3.7 23 37-59 171-193 (301)
259 1s96_A Guanylate kinase, GMP k 94.2 0.018 6.2E-07 55.4 2.4 22 37-58 18-39 (219)
260 3c8u_A Fructokinase; YP_612366 94.2 0.017 5.6E-07 55.0 2.1 22 37-58 24-45 (208)
261 1ji0_A ABC transporter; ATP bi 94.2 0.023 8E-07 55.4 3.2 23 37-59 34-56 (240)
262 2ff7_A Alpha-hemolysin translo 94.2 0.024 8.1E-07 55.7 3.2 23 37-59 37-59 (247)
263 2qor_A Guanylate kinase; phosp 94.2 0.017 5.6E-07 54.7 2.0 24 35-58 12-35 (204)
264 3a00_A Guanylate kinase, GMP k 94.1 0.019 6.7E-07 53.4 2.4 21 38-58 4-24 (186)
265 4fid_A G protein alpha subunit 94.1 0.047 1.6E-06 56.0 5.5 72 134-218 159-243 (340)
266 1np6_A Molybdopterin-guanine d 94.1 0.023 7.9E-07 52.5 2.9 25 34-58 5-29 (174)
267 2olj_A Amino acid ABC transpor 94.1 0.025 8.4E-07 56.1 3.2 23 37-59 52-74 (263)
268 2nq2_C Hypothetical ABC transp 94.1 0.025 8.5E-07 55.7 3.2 31 37-69 33-63 (253)
269 1z6g_A Guanylate kinase; struc 94.1 0.021 7E-07 54.9 2.5 22 37-58 25-46 (218)
270 2ixe_A Antigen peptide transpo 94.0 0.027 9.1E-07 56.1 3.2 23 37-59 47-69 (271)
271 1vpl_A ABC transporter, ATP-bi 94.0 0.027 9.1E-07 55.6 3.2 23 37-59 43-65 (256)
272 2d2e_A SUFC protein; ABC-ATPas 94.0 0.025 8.7E-07 55.5 3.0 22 37-58 31-52 (250)
273 2yz2_A Putative ABC transporte 93.9 0.029 9.9E-07 55.7 3.2 23 37-59 35-57 (266)
274 2cbz_A Multidrug resistance-as 93.8 0.031 1.1E-06 54.4 3.2 23 37-59 33-55 (237)
275 2ihy_A ABC transporter, ATP-bi 93.8 0.03 1E-06 55.9 3.2 23 37-59 49-71 (279)
276 4gp7_A Metallophosphoesterase; 93.6 0.033 1.1E-06 51.1 2.9 21 37-57 11-31 (171)
277 2zu0_C Probable ATP-dependent 93.6 0.032 1.1E-06 55.3 3.0 22 37-58 48-69 (267)
278 2qi9_C Vitamin B12 import ATP- 93.6 0.035 1.2E-06 54.5 3.1 23 37-59 28-50 (249)
279 1htw_A HI0065; nucleotide-bind 93.5 0.031 1.1E-06 50.8 2.5 22 37-58 35-56 (158)
280 1cip_A Protein (guanine nucleo 93.5 0.023 8E-07 58.8 1.8 70 135-217 192-274 (353)
281 1kag_A SKI, shikimate kinase I 93.5 0.031 1.1E-06 51.0 2.4 22 37-58 6-27 (173)
282 3nh6_A ATP-binding cassette SU 93.4 0.027 9.3E-07 57.1 2.2 22 37-58 82-103 (306)
283 3ohm_A Guanine nucleotide-bind 93.4 0.053 1.8E-06 55.4 4.3 71 135-218 166-249 (327)
284 2eyu_A Twitching motility prot 93.4 0.032 1.1E-06 55.2 2.5 22 37-58 27-48 (261)
285 3asz_A Uridine kinase; cytidin 93.4 0.03 1E-06 53.1 2.2 22 37-58 8-29 (211)
286 2j41_A Guanylate kinase; GMP, 93.3 0.035 1.2E-06 52.2 2.6 22 37-58 8-29 (207)
287 2ghi_A Transport protein; mult 93.3 0.04 1.4E-06 54.4 3.2 23 37-59 48-70 (260)
288 2yv5_A YJEQ protein; hydrolase 93.2 0.028 9.7E-07 56.9 1.9 54 165-218 72-125 (302)
289 2f1r_A Molybdopterin-guanine d 93.2 0.02 6.7E-07 52.9 0.6 23 36-58 3-25 (171)
290 1puj_A YLQF, conserved hypothe 93.1 0.089 3.1E-06 52.6 5.4 52 163-218 14-65 (282)
291 2v9p_A Replication protein E1; 93.1 0.038 1.3E-06 55.9 2.6 22 37-58 128-149 (305)
292 1odf_A YGR205W, hypothetical 3 93.1 0.09 3.1E-06 52.8 5.4 24 35-58 31-54 (290)
293 3b85_A Phosphate starvation-in 93.0 0.032 1.1E-06 53.2 1.8 22 37-58 24-45 (208)
294 2bdt_A BH3686; alpha-beta prot 93.0 0.04 1.4E-06 51.2 2.5 21 37-57 4-24 (189)
295 2bbw_A Adenylate kinase 4, AK4 93.0 0.052 1.8E-06 52.9 3.4 25 35-59 27-54 (246)
296 4eun_A Thermoresistant glucoki 93.0 0.039 1.3E-06 51.9 2.4 23 36-58 30-52 (200)
297 3q9l_A Septum site-determining 93.0 0.61 2.1E-05 45.2 11.3 64 136-216 114-186 (260)
298 3lw7_A Adenylate kinase relate 92.9 0.053 1.8E-06 49.1 3.2 20 36-55 2-21 (179)
299 3end_A Light-independent proto 92.9 0.22 7.7E-06 50.0 8.2 22 35-56 41-62 (307)
300 2pjz_A Hypothetical protein ST 92.7 0.055 1.9E-06 53.5 3.1 26 37-64 32-57 (263)
301 1xjc_A MOBB protein homolog; s 92.7 0.055 1.9E-06 49.7 2.9 25 34-58 3-27 (169)
302 2yv5_A YJEQ protein; hydrolase 92.6 0.056 1.9E-06 54.6 3.2 21 37-58 167-187 (302)
303 1knq_A Gluconate kinase; ALFA/ 92.6 0.049 1.7E-06 49.8 2.5 22 37-58 10-31 (175)
304 3kb2_A SPBC2 prophage-derived 92.6 0.064 2.2E-06 48.6 3.2 23 36-58 2-24 (173)
305 3aez_A Pantothenate kinase; tr 92.5 0.048 1.6E-06 55.4 2.4 22 37-58 92-113 (312)
306 2i3b_A HCR-ntpase, human cance 92.5 0.051 1.7E-06 50.9 2.5 22 37-58 3-24 (189)
307 3kta_A Chromosome segregation 92.5 0.054 1.9E-06 49.9 2.6 25 34-58 25-49 (182)
308 3jvv_A Twitching mobility prot 92.4 0.05 1.7E-06 56.3 2.5 22 37-58 125-146 (356)
309 3ec2_A DNA replication protein 92.4 0.11 3.7E-06 47.8 4.5 23 36-58 39-61 (180)
310 3lnc_A Guanylate kinase, GMP k 92.4 0.041 1.4E-06 53.0 1.7 22 37-58 29-51 (231)
311 4a74_A DNA repair and recombin 92.3 0.076 2.6E-06 50.7 3.5 30 37-66 27-56 (231)
312 2bbs_A Cystic fibrosis transme 92.3 0.062 2.1E-06 54.0 2.9 23 37-59 66-88 (290)
313 1cke_A CK, MSSA, protein (cyti 92.2 0.063 2.1E-06 51.3 2.8 23 36-58 6-28 (227)
314 3uie_A Adenylyl-sulfate kinase 92.2 0.059 2E-06 50.7 2.5 23 36-58 26-48 (200)
315 1azs_C GS-alpha; complex (lyas 92.1 0.07 2.4E-06 56.1 3.2 70 135-217 216-298 (402)
316 4f4c_A Multidrug resistance pr 92.0 1.4 4.8E-05 53.6 14.9 22 37-58 1107-1128(1321)
317 1p9r_A General secretion pathw 91.8 0.056 1.9E-06 57.2 2.0 22 37-58 169-190 (418)
318 1z47_A CYSA, putative ABC-tran 91.8 0.081 2.8E-06 54.7 3.2 23 37-59 43-65 (355)
319 4e22_A Cytidylate kinase; P-lo 91.7 0.086 2.9E-06 51.7 3.1 25 36-60 28-55 (252)
320 2jeo_A Uridine-cytidine kinase 91.7 0.071 2.4E-06 51.9 2.5 22 37-58 27-48 (245)
321 3tui_C Methionine import ATP-b 91.7 0.084 2.9E-06 54.7 3.1 23 37-59 56-78 (366)
322 3fvq_A Fe(3+) IONS import ATP- 91.7 0.078 2.7E-06 54.8 2.9 23 37-59 32-54 (359)
323 3t61_A Gluconokinase; PSI-biol 91.7 0.074 2.5E-06 49.9 2.5 23 36-58 19-41 (202)
324 1jjv_A Dephospho-COA kinase; P 91.7 0.088 3E-06 49.5 3.0 22 37-58 4-25 (206)
325 2jaq_A Deoxyguanosine kinase; 91.6 0.095 3.2E-06 48.9 3.2 22 37-58 2-23 (205)
326 2yyz_A Sugar ABC transporter, 91.6 0.088 3E-06 54.5 3.2 23 37-59 31-53 (359)
327 2vp4_A Deoxynucleoside kinase; 91.6 0.081 2.8E-06 51.0 2.7 22 37-58 22-43 (230)
328 2it1_A 362AA long hypothetical 91.5 0.089 3.1E-06 54.5 3.1 23 37-59 31-53 (362)
329 3rlf_A Maltose/maltodextrin im 91.5 0.092 3.1E-06 54.7 3.1 23 37-59 31-53 (381)
330 1ly1_A Polynucleotide kinase; 91.5 0.094 3.2E-06 47.9 2.9 21 37-57 4-24 (181)
331 2if2_A Dephospho-COA kinase; a 91.4 0.077 2.6E-06 49.8 2.4 21 37-57 3-23 (204)
332 1g29_1 MALK, maltose transport 91.4 0.094 3.2E-06 54.6 3.2 23 37-59 31-53 (372)
333 2qt1_A Nicotinamide riboside k 91.4 0.093 3.2E-06 49.4 2.9 22 37-58 23-44 (207)
334 2ewv_A Twitching motility prot 91.4 0.076 2.6E-06 55.4 2.4 22 37-58 138-159 (372)
335 2kjq_A DNAA-related protein; s 91.3 0.074 2.5E-06 47.6 2.0 24 35-58 36-59 (149)
336 1nij_A Hypothetical protein YJ 91.3 0.059 2E-06 54.9 1.4 26 34-59 3-28 (318)
337 1lw7_A Transcriptional regulat 91.2 0.071 2.4E-06 55.4 2.1 22 37-58 172-193 (365)
338 1v43_A Sugar-binding transport 91.2 0.099 3.4E-06 54.4 3.1 23 37-59 39-61 (372)
339 1f2t_A RAD50 ABC-ATPase; DNA d 91.2 0.12 4.1E-06 46.2 3.2 23 34-56 22-44 (149)
340 3l82_B F-box only protein 4; T 91.1 0.24 8.2E-06 47.0 5.3 95 159-255 112-217 (227)
341 1sq5_A Pantothenate kinase; P- 91.0 0.081 2.8E-06 53.6 2.2 22 37-58 82-103 (308)
342 2ga8_A Hypothetical 39.9 kDa p 91.0 0.21 7.3E-06 51.3 5.2 45 6-58 3-47 (359)
343 1qhx_A CPT, protein (chloramph 90.9 0.11 3.9E-06 47.3 2.9 22 37-58 5-26 (178)
344 1rz3_A Hypothetical protein rb 90.9 0.089 3E-06 49.5 2.2 22 37-58 24-45 (201)
345 3vaa_A Shikimate kinase, SK; s 90.8 0.11 3.7E-06 48.7 2.8 22 36-57 26-47 (199)
346 3kjh_A CO dehydrogenase/acetyl 90.8 0.42 1.4E-05 45.9 7.2 63 135-214 131-194 (254)
347 1nks_A Adenylate kinase; therm 90.7 0.11 3.6E-06 48.0 2.6 21 37-57 3-23 (194)
348 2ehv_A Hypothetical protein PH 90.7 0.1 3.4E-06 50.5 2.5 21 37-57 32-52 (251)
349 3d31_A Sulfate/molybdate ABC t 90.7 0.083 2.8E-06 54.5 1.9 23 37-59 28-50 (348)
350 3trf_A Shikimate kinase, SK; a 90.6 0.14 4.8E-06 47.1 3.3 22 35-56 5-26 (185)
351 1kht_A Adenylate kinase; phosp 90.6 0.12 4.3E-06 47.5 2.9 21 37-57 5-25 (192)
352 3qf7_A RAD50; ABC-ATPase, ATPa 90.5 0.12 4E-06 53.8 2.9 25 33-57 21-45 (365)
353 3gd7_A Fusion complex of cysti 90.5 0.12 4.1E-06 54.1 2.9 23 37-59 49-71 (390)
354 2npi_A Protein CLP1; CLP1-PCF1 90.4 0.1 3.5E-06 55.9 2.4 25 35-59 138-162 (460)
355 2xtz_A Guanine nucleotide-bind 90.3 0.064 2.2E-06 55.5 0.7 70 135-217 182-264 (354)
356 1y63_A LMAJ004144AAA protein; 90.3 0.15 5.3E-06 47.1 3.3 24 35-58 10-33 (184)
357 2iyv_A Shikimate kinase, SK; t 90.3 0.14 4.7E-06 47.2 2.9 22 36-57 3-24 (184)
358 1via_A Shikimate kinase; struc 90.2 0.14 4.9E-06 46.7 2.9 23 36-58 5-27 (175)
359 4b4t_L 26S protease subunit RP 90.2 1.4 4.9E-05 46.5 11.0 25 34-58 213-238 (437)
360 3tqc_A Pantothenate kinase; bi 90.1 0.12 4.1E-06 52.6 2.5 22 37-58 94-115 (321)
361 2rhm_A Putative kinase; P-loop 90.0 0.14 4.7E-06 47.4 2.7 22 36-57 6-27 (193)
362 3iij_A Coilin-interacting nucl 90.0 0.17 5.8E-06 46.4 3.2 23 34-56 10-32 (180)
363 1oxx_K GLCV, glucose, ABC tran 90.0 0.084 2.9E-06 54.6 1.2 23 37-59 33-55 (353)
364 3cm0_A Adenylate kinase; ATP-b 90.0 0.15 5.2E-06 46.8 2.9 20 37-56 6-25 (186)
365 3thx_A DNA mismatch repair pro 89.9 0.93 3.2E-05 52.8 10.0 19 37-55 664-682 (934)
366 1t9h_A YLOQ, probable GTPase E 89.8 0.17 5.9E-06 51.1 3.3 51 168-219 82-133 (307)
367 2plr_A DTMP kinase, probable t 89.7 0.16 5.5E-06 47.6 2.9 23 36-58 5-27 (213)
368 3euj_A Chromosome partition pr 89.7 0.13 4.5E-06 55.2 2.5 23 36-58 30-52 (483)
369 2c95_A Adenylate kinase 1; tra 89.7 0.18 6.2E-06 46.6 3.2 23 35-57 9-31 (196)
370 3fb4_A Adenylate kinase; psych 89.7 0.18 6E-06 47.8 3.2 21 37-57 2-22 (216)
371 2v54_A DTMP kinase, thymidylat 89.6 0.18 6.3E-06 47.0 3.3 23 36-58 5-27 (204)
372 1gvn_B Zeta; postsegregational 89.6 0.36 1.2E-05 48.2 5.5 21 37-57 35-55 (287)
373 4a82_A Cystic fibrosis transme 89.5 0.15 5.1E-06 56.4 2.9 22 37-58 369-390 (578)
374 2pez_A Bifunctional 3'-phospho 89.4 0.15 5.2E-06 46.7 2.5 22 37-58 7-28 (179)
375 2x8a_A Nuclear valosin-contain 89.4 0.15 5E-06 50.7 2.5 21 38-58 47-67 (274)
376 3b5x_A Lipid A export ATP-bind 89.4 0.19 6.6E-06 55.6 3.7 22 37-58 371-392 (582)
377 2z0h_A DTMP kinase, thymidylat 89.3 0.18 6.3E-06 46.7 2.9 22 37-58 2-23 (197)
378 1e6c_A Shikimate kinase; phosp 89.3 0.19 6.5E-06 45.5 3.0 22 36-57 3-24 (173)
379 3dl0_A Adenylate kinase; phosp 89.3 0.2 6.7E-06 47.5 3.2 21 37-57 2-22 (216)
380 3qf4_A ABC transporter, ATP-bi 89.2 0.17 5.8E-06 56.1 3.1 22 37-58 371-392 (587)
381 3ozx_A RNAse L inhibitor; ATP 89.2 0.21 7.1E-06 54.7 3.7 23 37-59 296-318 (538)
382 3b60_A Lipid A export ATP-bind 89.2 0.18 6E-06 55.9 3.1 22 37-58 371-392 (582)
383 2yvu_A Probable adenylyl-sulfa 89.1 0.16 5.6E-06 46.8 2.5 23 36-58 14-36 (186)
384 1ixz_A ATP-dependent metallopr 89.1 0.16 5.5E-06 49.5 2.5 21 38-58 52-72 (254)
385 1yqt_A RNAse L inhibitor; ATP- 89.0 0.25 8.4E-06 54.1 4.1 23 37-59 314-336 (538)
386 2pt5_A Shikimate kinase, SK; a 88.8 0.24 8.1E-06 44.7 3.2 21 37-57 2-22 (168)
387 2cdn_A Adenylate kinase; phosp 88.8 0.27 9.2E-06 46.0 3.7 24 34-57 18-42 (201)
388 2bwj_A Adenylate kinase 5; pho 88.8 0.21 7.2E-06 46.3 3.0 22 36-57 13-34 (199)
389 3qf4_B Uncharacterized ABC tra 88.8 0.17 6E-06 56.1 2.8 22 37-58 383-404 (598)
390 2pbr_A DTMP kinase, thymidylat 88.8 0.21 7.1E-06 46.1 2.9 21 37-57 2-22 (195)
391 2yl4_A ATP-binding cassette SU 88.8 0.17 5.8E-06 56.2 2.6 22 37-58 372-393 (595)
392 3bk7_A ABC transporter ATP-bin 88.7 0.25 8.5E-06 54.9 3.9 23 37-59 384-406 (607)
393 1yqt_A RNAse L inhibitor; ATP- 88.7 0.21 7.3E-06 54.6 3.4 23 37-59 49-71 (538)
394 1tev_A UMP-CMP kinase; ploop, 88.7 0.21 7.3E-06 46.0 2.9 21 37-57 5-25 (196)
395 1gtv_A TMK, thymidylate kinase 88.7 0.095 3.3E-06 49.4 0.4 22 37-58 2-23 (214)
396 2wwf_A Thymidilate kinase, put 88.6 0.2 6.8E-06 47.1 2.7 22 36-57 11-32 (212)
397 2w0m_A SSO2452; RECA, SSPF, un 88.6 0.19 6.3E-06 47.8 2.5 22 37-58 25-46 (235)
398 3h2y_A GTPase family protein; 88.6 0.27 9.2E-06 51.1 3.9 56 160-219 57-112 (368)
399 3a4m_A L-seryl-tRNA(SEC) kinas 88.6 0.21 7.2E-06 49.1 2.9 23 35-57 4-26 (260)
400 1nn5_A Similar to deoxythymidy 88.5 0.2 7E-06 47.1 2.7 22 36-57 10-31 (215)
401 1zd8_A GTP:AMP phosphotransfer 88.5 0.22 7.6E-06 47.6 3.0 23 35-57 7-29 (227)
402 3qks_A DNA double-strand break 88.3 0.26 8.9E-06 46.5 3.2 24 34-57 22-45 (203)
403 3nwj_A ATSK2; P loop, shikimat 88.2 0.21 7E-06 48.9 2.5 23 35-57 48-70 (250)
404 3ozx_A RNAse L inhibitor; ATP 88.2 0.23 7.9E-06 54.3 3.1 23 37-59 27-49 (538)
405 2p5t_B PEZT; postsegregational 88.2 0.35 1.2E-05 47.2 4.2 22 37-58 34-55 (253)
406 3ec1_A YQEH GTPase; atnos1, at 88.2 0.56 1.9E-05 48.6 6.0 56 160-219 59-114 (369)
407 3ake_A Cytidylate kinase; CMP 88.1 0.24 8.1E-06 46.3 2.8 22 36-57 3-24 (208)
408 1in4_A RUVB, holliday junction 88.0 0.22 7.6E-06 50.9 2.8 24 35-58 51-74 (334)
409 1cr0_A DNA primase/helicase; R 88.0 0.19 6.5E-06 50.3 2.2 22 37-58 37-58 (296)
410 1aky_A Adenylate kinase; ATP:A 88.0 0.28 9.4E-06 46.6 3.3 22 36-57 5-26 (220)
411 3j16_B RLI1P; ribosome recycli 88.0 0.24 8.2E-06 55.0 3.1 23 37-59 105-127 (608)
412 1e4v_A Adenylate kinase; trans 88.0 0.26 8.8E-06 46.7 3.0 21 37-57 2-22 (214)
413 1qf9_A UMP/CMP kinase, protein 87.9 0.24 8.1E-06 45.6 2.6 22 36-57 7-28 (194)
414 1zak_A Adenylate kinase; ATP:A 87.8 0.24 8.2E-06 47.2 2.7 22 36-57 6-27 (222)
415 1iy2_A ATP-dependent metallopr 87.8 0.22 7.4E-06 49.4 2.5 21 38-58 76-96 (278)
416 1jbk_A CLPB protein; beta barr 87.8 0.59 2E-05 42.4 5.3 24 35-58 43-66 (195)
417 1ukz_A Uridylate kinase; trans 87.7 0.29 9.8E-06 45.8 3.1 23 35-57 15-37 (203)
418 3bk7_A ABC transporter ATP-bin 87.7 0.27 9.2E-06 54.6 3.3 23 37-59 119-141 (607)
419 2vli_A Antibiotic resistance p 87.6 0.22 7.7E-06 45.5 2.2 22 36-57 6-27 (183)
420 3tlx_A Adenylate kinase 2; str 87.5 0.61 2.1E-05 45.2 5.5 22 36-57 30-51 (243)
421 1vht_A Dephospho-COA kinase; s 87.3 0.28 9.6E-06 46.5 2.8 22 36-57 5-26 (218)
422 2ze6_A Isopentenyl transferase 87.3 0.25 8.4E-06 48.4 2.5 22 37-58 3-24 (253)
423 1svm_A Large T antigen; AAA+ f 87.2 0.24 8.3E-06 51.5 2.5 22 37-58 171-192 (377)
424 2oze_A ORF delta'; para, walke 87.2 1.2 4.3E-05 44.1 7.7 20 37-56 36-58 (298)
425 1m7g_A Adenylylsulfate kinase; 87.0 0.27 9.2E-06 46.5 2.5 23 36-58 26-48 (211)
426 1uf9_A TT1252 protein; P-loop, 87.0 0.28 9.7E-06 45.6 2.6 24 35-58 8-31 (203)
427 2xb4_A Adenylate kinase; ATP-b 86.9 0.33 1.1E-05 46.3 3.1 21 37-57 2-22 (223)
428 3exa_A TRNA delta(2)-isopenten 86.9 0.38 1.3E-05 48.5 3.6 38 35-72 3-50 (322)
429 1lv7_A FTSH; alpha/beta domain 86.9 0.49 1.7E-05 46.1 4.4 22 37-58 47-68 (257)
430 1qhl_A Protein (cell division 86.6 0.061 2.1E-06 51.9 -2.3 22 38-59 30-51 (227)
431 1zuh_A Shikimate kinase; alpha 86.5 0.36 1.2E-05 43.6 2.9 23 35-57 7-29 (168)
432 2cvh_A DNA repair and recombin 86.3 0.31 1.1E-05 45.9 2.5 21 37-57 22-42 (220)
433 3be4_A Adenylate kinase; malar 86.1 0.37 1.3E-05 45.7 3.0 22 36-57 6-27 (217)
434 1ak2_A Adenylate kinase isoenz 86.0 0.41 1.4E-05 46.0 3.3 23 35-57 16-38 (233)
435 1sxj_E Activator 1 40 kDa subu 86.0 0.31 1.1E-05 49.8 2.5 25 34-58 35-59 (354)
436 1n0w_A DNA repair protein RAD5 86.0 0.32 1.1E-05 46.6 2.5 22 37-58 26-47 (243)
437 3r20_A Cytidylate kinase; stru 86.0 0.33 1.1E-05 46.9 2.5 22 36-57 10-31 (233)
438 4eaq_A DTMP kinase, thymidylat 85.7 0.39 1.3E-05 46.2 2.9 22 37-58 28-49 (229)
439 3thx_B DNA mismatch repair pro 85.7 0.83 2.9E-05 53.0 6.1 22 37-58 675-696 (918)
440 2obl_A ESCN; ATPase, hydrolase 85.6 0.32 1.1E-05 50.0 2.4 23 37-59 73-95 (347)
441 3j16_B RLI1P; ribosome recycli 85.6 0.39 1.3E-05 53.3 3.2 22 38-59 381-402 (608)
442 2o5v_A DNA replication and rep 85.6 0.33 1.1E-05 50.2 2.4 26 33-58 24-49 (359)
443 3qkt_A DNA double-strand break 85.4 0.43 1.5E-05 48.8 3.2 24 34-57 22-45 (339)
444 1e69_A Chromosome segregation 85.4 0.35 1.2E-05 49.1 2.5 25 34-58 23-47 (322)
445 3a8t_A Adenylate isopentenyltr 85.4 0.63 2.1E-05 47.5 4.3 37 36-72 41-87 (339)
446 2grj_A Dephospho-COA kinase; T 85.2 0.44 1.5E-05 44.5 2.9 23 35-57 12-34 (192)
447 4aby_A DNA repair protein RECN 85.1 0.14 4.9E-06 53.9 -0.6 26 33-58 58-83 (415)
448 3foz_A TRNA delta(2)-isopenten 84.9 0.46 1.6E-05 47.9 3.0 22 36-57 11-32 (316)
449 2dhr_A FTSH; AAA+ protein, hex 84.9 0.72 2.5E-05 49.8 4.8 22 37-58 66-87 (499)
450 2dpy_A FLII, flagellum-specifi 84.8 0.36 1.2E-05 51.3 2.4 23 37-59 159-181 (438)
451 1w1w_A Structural maintenance 84.8 0.41 1.4E-05 50.7 2.8 24 36-59 27-50 (430)
452 3auy_A DNA double-strand break 84.3 0.43 1.5E-05 49.5 2.6 23 34-56 24-46 (371)
453 1wb9_A DNA mismatch repair pro 84.3 1.6 5.5E-05 50.0 7.6 23 37-59 609-631 (800)
454 3sr0_A Adenylate kinase; phosp 84.1 0.56 1.9E-05 44.3 3.2 22 37-58 2-23 (206)
455 1sxj_C Activator 1 40 kDa subu 84.1 0.46 1.6E-05 48.5 2.7 25 34-58 45-69 (340)
456 2p65_A Hypothetical protein PF 84.0 0.88 3E-05 41.1 4.4 24 35-58 43-66 (187)
457 1q3t_A Cytidylate kinase; nucl 83.8 0.5 1.7E-05 45.5 2.7 23 35-57 16-38 (236)
458 3k9g_A PF-32 protein; ssgcid, 83.7 4.5 0.00015 39.2 9.8 88 135-244 144-233 (267)
459 4f4c_A Multidrug resistance pr 83.7 0.48 1.6E-05 57.6 3.1 22 37-58 446-467 (1321)
460 3bos_A Putative DNA replicatio 83.7 0.61 2.1E-05 44.3 3.3 24 35-58 52-75 (242)
461 1ltq_A Polynucleotide kinase; 83.7 0.53 1.8E-05 47.0 2.9 21 37-57 4-24 (301)
462 2chg_A Replication factor C sm 83.6 0.61 2.1E-05 43.4 3.2 24 35-58 38-61 (226)
463 3eph_A TRNA isopentenyltransfe 83.6 0.46 1.6E-05 49.7 2.4 22 36-57 3-24 (409)
464 1uj2_A Uridine-cytidine kinase 83.6 0.55 1.9E-05 45.7 2.9 22 36-57 23-44 (252)
465 3g5u_A MCG1178, multidrug resi 83.4 0.53 1.8E-05 57.1 3.3 22 37-58 418-439 (1284)
466 1fnn_A CDC6P, cell division co 83.4 0.53 1.8E-05 48.5 2.9 25 34-58 43-67 (389)
467 1d2n_A N-ethylmaleimide-sensit 83.2 1.2 4.2E-05 43.5 5.4 24 35-58 64-87 (272)
468 1nlf_A Regulatory protein REPA 83.1 0.46 1.6E-05 47.0 2.2 21 37-57 32-52 (279)
469 3umf_A Adenylate kinase; rossm 83.1 0.66 2.3E-05 44.2 3.2 25 34-58 27-52 (217)
470 3l2o_B F-box only protein 4; s 83.0 1.3 4.5E-05 44.0 5.3 94 162-257 200-304 (312)
471 2f6r_A COA synthase, bifunctio 82.9 0.54 1.8E-05 46.7 2.6 20 37-56 77-96 (281)
472 1tue_A Replication protein E1; 82.8 0.58 2E-05 44.1 2.6 21 37-57 60-80 (212)
473 1a5t_A Delta prime, HOLB; zinc 82.7 7.9 0.00027 39.1 11.5 25 34-58 22-47 (334)
474 2iw3_A Elongation factor 3A; a 82.5 0.41 1.4E-05 55.8 1.7 23 37-59 701-723 (986)
475 2ce7_A Cell division protein F 82.5 1.1 3.9E-05 48.0 5.0 22 37-58 51-72 (476)
476 3h4m_A Proteasome-activating n 82.4 0.84 2.9E-05 45.0 3.8 23 36-58 52-74 (285)
477 3n70_A Transport activator; si 82.4 1.7 5.7E-05 38.2 5.4 21 38-58 27-47 (145)
478 2ius_A DNA translocase FTSK; n 82.2 0.61 2.1E-05 50.4 2.8 24 34-57 166-189 (512)
479 2w58_A DNAI, primosome compone 82.2 0.77 2.6E-05 42.7 3.3 23 36-58 55-77 (202)
480 1p5z_B DCK, deoxycytidine kina 82.1 0.62 2.1E-05 45.6 2.7 25 34-58 23-47 (263)
481 2qz4_A Paraplegin; AAA+, SPG7, 81.9 1.5 5.2E-05 42.3 5.4 23 36-58 40-62 (262)
482 3cr8_A Sulfate adenylyltranfer 81.3 0.39 1.3E-05 52.6 0.9 22 37-58 371-392 (552)
483 3fkq_A NTRC-like two-domain pr 81.3 5.2 0.00018 41.2 9.5 91 135-245 259-351 (373)
484 3co5_A Putative two-component 81.1 1.5 5.1E-05 38.4 4.5 21 38-58 30-50 (143)
485 2qmh_A HPR kinase/phosphorylas 80.3 0.9 3.1E-05 42.6 2.9 23 36-58 35-57 (205)
486 1njg_A DNA polymerase III subu 80.2 0.97 3.3E-05 42.5 3.3 22 37-58 47-68 (250)
487 3t15_A Ribulose bisphosphate c 80.0 0.88 3E-05 45.4 3.0 26 33-58 33-59 (293)
488 3zvl_A Bifunctional polynucleo 80.0 0.84 2.9E-05 48.1 2.9 22 36-57 259-280 (416)
489 3cf0_A Transitional endoplasmi 79.6 1.4 4.7E-05 44.1 4.3 22 37-58 51-72 (301)
490 2ph1_A Nucleotide-binding prot 79.6 5.2 0.00018 38.8 8.4 66 135-215 128-194 (262)
491 3d3q_A TRNA delta(2)-isopenten 79.6 0.91 3.1E-05 46.4 2.9 23 36-58 8-30 (340)
492 2iw3_A Elongation factor 3A; a 79.4 0.8 2.7E-05 53.4 2.7 24 37-60 463-486 (986)
493 1a7j_A Phosphoribulokinase; tr 79.4 0.63 2.1E-05 46.5 1.6 23 35-57 5-27 (290)
494 3pfi_A Holliday junction ATP-d 79.2 1.9 6.5E-05 43.6 5.3 25 34-58 54-78 (338)
495 2ocp_A DGK, deoxyguanosine kin 79.0 0.91 3.1E-05 43.7 2.6 22 37-58 4-25 (241)
496 4ag6_A VIRB4 ATPase, type IV s 78.8 0.85 2.9E-05 47.5 2.5 26 34-59 34-59 (392)
497 3ux8_A Excinuclease ABC, A sub 78.7 0.85 2.9E-05 51.3 2.6 20 37-56 350-369 (670)
498 2qby_A CDC6 homolog 1, cell di 78.6 1.1 3.8E-05 45.8 3.4 24 35-58 45-68 (386)
499 2rcn_A Probable GTPase ENGC; Y 78.6 0.95 3.3E-05 46.6 2.7 50 169-219 127-176 (358)
500 3b9p_A CG5977-PA, isoform A; A 78.6 0.87 3E-05 45.2 2.4 23 36-58 55-77 (297)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=1.3e-95 Score=822.65 Aligned_cols=609 Identities=37% Similarity=0.624 Sum_probs=521.7
Q ss_pred hhhhhHHHHHHHHHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCC
Q 006928 3 TMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEG 82 (625)
Q Consensus 3 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~ 82 (625)
+|+.||+++|+|||.+..+|... .+++|+|+|||.||+|||||||+|+|.+|||+|.++|||+|+++++.+.+
T Consensus 25 ~~~~li~~inkl~d~l~~lg~~~------~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~- 97 (772)
T 3zvr_A 25 GMEDLIPLVNRLQDAFSAIGQNA------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST- 97 (772)
T ss_dssp CGGGHHHHHHHHHHHHHTTTCCG------GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECS-
T ss_pred cHHHHHHHHHHHHHHHHhcCccc------cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCC-
Confidence 48999999999999999999643 26999999999999999999999999999999999999999999998764
Q ss_pred CCcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHH
Q 006928 83 GTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDI 162 (625)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i 162 (625)
..|+.+.+.++..+.+++++..+|+..++.+.|.+++|+.+++.++|++|+.++++||||||+...+..+||+++...+
T Consensus 98 -~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i 176 (772)
T 3zvr_A 98 -TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQI 176 (772)
T ss_dssp -SCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHH
T ss_pred -cchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999988888999888999
Q ss_pred HHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEe
Q 006928 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVN 242 (625)
Q Consensus 163 ~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~ 242 (625)
.+++..|+.+...+||+|++++.++..++.+.+++.+++.+.|+|+|+||+|+++++....+++.++..++++||..|++
T Consensus 177 ~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~ 256 (772)
T 3zvr_A 177 RDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVN 256 (772)
T ss_dssp HHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCC
T ss_pred HHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEE
Confidence 99999999866567888899999999999878999999999999999999999988776677777666778899999999
Q ss_pred CChhhhhccCCHHHHHHHHHhhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC
Q 006928 243 RSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGR 322 (625)
Q Consensus 243 ~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~eL~~lg~ 322 (625)
+|+.+.....+..++...|..||..+++|..+.++.|+..|++.|++.|++|++++||+++..|+..+..++.+++++|.
T Consensus 257 iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~ 336 (772)
T 3zvr_A 257 RSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKN 336 (772)
T ss_dssp CCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCC
Confidence 99977655566677777788899999999888899999999999999999999999999999999999999999999998
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCC--------CCCchhHhHHhhhhHHHhccCCccccCchhhHHHHHHhhc
Q 006928 323 PIGVDSGAQLYTILEMCRAFERVFKEHLDGGR--------AGGDRIYGVFDHQLPAALKKLPFDRHLSTRNVQKVVSEAD 394 (625)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~--------~~g~~i~~~f~~~f~~~~~~~~~~~~~~~~~i~~~i~~~~ 394 (625)
+.+.++..+..+|++++++|++.|.++++|.+ .||+||.++|++.|+..+.++++++.+++++|+++|+|++
T Consensus 337 ~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n~~ 416 (772)
T 3zvr_A 337 FRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIH 416 (772)
T ss_dssp HCCCSSSCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHHCC
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHhCC
Confidence 88777667777899999999999999999998 5899999999999999999999999999999999999999
Q ss_pred cCCCCCCCchhHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 006928 395 GYQPHLIAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTLQSDIAAAATEALEKFRDESRK 474 (625)
Q Consensus 395 G~~p~~~~pe~af~~li~~~i~~l~~Ps~~~v~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~~~~~l~~~~~~a~~ 474 (625)
|++|++|+|+.+|+.||++||++|++||++|++.|+++|.+++++|. .+|.|||+|+++|.+++.+.|++++.+|++
T Consensus 417 G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~---~~l~RfP~Lr~ei~~iv~~~Lre~~~~t~~ 493 (772)
T 3zvr_A 417 DIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS---EKLQQYPRLREEMERIVTTHIREREGRTKE 493 (772)
T ss_dssp ------CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHG---GGGTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999884 479999999999999999999999999999
Q ss_pred HHHHHHHHhcccccHH---Hhhhhh------c---------c-----cccc------------ccC--------------
Q 006928 475 TVLRLVDMESSYLTVE---FFRKLS------E---------Q-----PERS------------ASD-------------- 505 (625)
Q Consensus 475 ~i~~li~~E~~yint~---~~~~~~------~---------~-----~~~~------------~~~-------------- 505 (625)
+|.+||+||++||||+ |.+... + + +.++ ++.
T Consensus 494 ~V~~LId~E~ayintnHpdf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (772)
T 3zvr_A 494 QVMLLIDIELAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWY 573 (772)
T ss_dssp HHHHHHHHHHTCCCTTCTTCCCC---------------------CCEEEEEEEEESSSCCC---CCEEEEEEESSEEEEE
T ss_pred HHHHHHHHhcCCCCCCChhhhchHHHHHHHHHHhhcccccCCccccceeeeeeeecccccccCCCccceeeccccccccc
Confidence 9999999999999995 433110 0 0 0000 000
Q ss_pred CCCCCC----------------CC-------------CCCC------------------------------CCCCC----
Q 006928 506 KNASDK----------------NA-------------PDRN------------------------------APPPG---- 522 (625)
Q Consensus 506 ~~~~~~----------------~~-------------~~~~------------------------------~~~~~---- 522 (625)
++...+ .. +... --|..
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (772)
T 3zvr_A 574 KDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGDK 653 (772)
T ss_dssp SSTTCCCEEEEEECTTEEEEEC-------CEEEEEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHHHHTTCCBC-----
T ss_pred cchhhhcccccccccccccchhhhccccccccccccCCccccccchhhhhhhhccccccchhhHHhhhhcccCCcccccc
Confidence 000000 00 0000 00000
Q ss_pred -----------CCCCCCCCh---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhH
Q 006928 523 -----------PQNPERFSD---YHFRRIGSNVSGYIGMVCDTLKNSIPKAVVYCQVLAAKRSLLNQFYAHVGRQEKERL 588 (625)
Q Consensus 523 -----------~~~~~~~~~---~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lV~~~~~~l~~~L~~~L~~~~~~~~ 588 (625)
......+++ .++..|+.+|+|||.||+|++.|+|||+|||+|||.+++.++.+|+.+||..+ .+
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ly~~~--~~ 731 (772)
T 3zvr_A 654 EKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCG--DQ 731 (772)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTC--CT
T ss_pred ccccccCCccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CH
Confidence 000001122 24678999999999999999999999999999999999999999999999986 38
Q ss_pred hhhcCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 006928 589 GKMLDEDPQLMDRRATLAKRLELYKSARDEIDAVAW 624 (625)
Q Consensus 589 ~~ll~E~~~i~~~R~~l~~~l~~L~~A~~~l~~~~~ 624 (625)
.+||+|++++++||++|.+++++|++|.++|.++++
T Consensus 732 ~~lm~Es~~~~~~r~~~~~~~~~l~~a~~ii~~i~~ 767 (772)
T 3zvr_A 732 NTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINT 767 (772)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999875
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=3.6e-84 Score=728.17 Aligned_cols=564 Identities=27% Similarity=0.409 Sum_probs=479.5
Q ss_pred HHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccC--
Q 006928 15 QRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHA-- 92 (625)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~-- 92 (625)
.|.+..+|... .+++|+|+|||++||||||||++|+|. .+|+++|.||++|..+.+.+.+....|....+-
T Consensus 31 id~l~~~gv~~------~l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~ 103 (608)
T 3szr_A 31 IDSLRALGVEQ------DLALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQD 103 (608)
T ss_dssp HHHHHHHSCCS------SCCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCEEEESCC-
T ss_pred HHHHHhCCCCC------cccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccccceeEEeeec
Confidence 44455666533 268999999999999999999999999 579999999999999987776655555544332
Q ss_pred CCCccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcC
Q 006928 93 PRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK 172 (625)
Q Consensus 93 ~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~ 172 (625)
....+.++..+.+.+........+.+.+++.+++.+.+.+++.|+++|+|+||+...+..+++.+....+.+++..|+.+
T Consensus 104 Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~ 183 (608)
T 3szr_A 104 YEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR 183 (608)
T ss_dssp --CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS
T ss_pred ccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc
Confidence 12356678888888888777777778899999999999999999999999999999988899999999999999999999
Q ss_pred CCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcccc--HHHHHhCcccccCCCeEEEEeCChhhhhc
Q 006928 173 PSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTN--ALEVLEGRSYRLQHPWVGIVNRSQADINK 250 (625)
Q Consensus 173 ~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (625)
+.++++++++++.|+++++++++++.+++.|.|||+|+||+|+++.++. +.+++.|+.+++++||++|+|+|++++..
T Consensus 184 ~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr~~~~~~~ 263 (608)
T 3szr_A 184 QETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQD 263 (608)
T ss_dssp SSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCSCTTCTTT
T ss_pred CCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecCchhhccc
Confidence 9999999999999999999999999999999999999999999988863 67888899999999999999999999999
Q ss_pred cCCHHHHHHHHHhhhccCCCCCcccc--ccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Q 006928 251 NVDMIAARRKEREYFETSPEYGHLAS--KMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPIGVDS 328 (625)
Q Consensus 251 ~~~~~~~~~~e~~~f~~~~~~~~~~~--~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~eL~~lg~~~~~~~ 328 (625)
..+..++...|..||.+++||+.+.+ ++|+++|+++|+++|.+||+++||.++..|+..+.+++.+|..||.+++.+.
T Consensus 264 ~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~~~~~ 343 (608)
T 3szr_A 264 QLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDE 343 (608)
T ss_dssp CCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCSH
T ss_pred CCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCH
Confidence 99999999999999999999987753 8999999999999999999999999999999999999999999999888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCC---chhHhHHhhhhHHHhccCCc----cccCchhhHHHHHHhhccCCCCCC
Q 006928 329 GAQLYTILEMCRAFERVFKEHLDGGRAGG---DRIYGVFDHQLPAALKKLPF----DRHLSTRNVQKVVSEADGYQPHLI 401 (625)
Q Consensus 329 ~~~~~~l~~~~~~f~~~~~~~~~g~~~~g---~~i~~~f~~~f~~~~~~~~~----~~~~~~~~i~~~i~~~~G~~p~~~ 401 (625)
.+++.+|++++++|++.+.++++|.+..+ .+++..+++.|..+...+.. ......++|++.+++++|.+++.|
T Consensus 344 ~~~~~~l~~~~~~f~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~f 423 (608)
T 3szr_A 344 NEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPGF 423 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCCCCCC
Confidence 88888999999999999999999997543 57777777777665543321 112346789999999999999999
Q ss_pred CchhHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006928 402 APEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTLQSDIAAAATEALEKFRDESRKTVLRLVD 481 (625)
Q Consensus 402 ~pe~af~~li~~~i~~l~~Ps~~~v~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~~~~~l~~~~~~a~~~i~~li~ 481 (625)
+|+.+|+.+|++||++|++|+.+|++.|++++..++.++.. .+|.|||+|++++.+++.++++++..+|+++|.++|+
T Consensus 424 ~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~--~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~~li~ 501 (608)
T 3szr_A 424 VNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQ 501 (608)
T ss_dssp SCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHH--HHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987665 5899999999999999999999999999999999999
Q ss_pred HhcccccHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006928 482 MESSYLTVEFFRKLSEQPERSASDKNASDKNAPDRNAPPPGPQNPERFSDYHFRRIGSNVSGYIGMVCDTLKNSIPKAVV 561 (625)
Q Consensus 482 ~E~~yint~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~ 561 (625)
||+.||+.|.... . ......+|+.+|+|||+||+||++|+|||+||
T Consensus 502 mE~~~~~~d~~~~--~--------------------------------~~~~~~ei~~~l~sY~~iv~~~~~D~vP~~I~ 547 (608)
T 3szr_A 502 MEQIVYGAFQSSS--A--------------------------------TDSSMEEIFQHLMAYHQEASKRISSHIPLIIQ 547 (608)
T ss_dssp HHHHCCCC-------------------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccccCCcccc--C--------------------------------CCccHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999887653211 0 00012469999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006928 562 YCQVLAAKRSLLNQFYAHVGRQEKERLGKMLDEDPQLMDRRATLAKRLELYKSARDEIDAVA 623 (625)
Q Consensus 562 ~~lV~~~~~~l~~~L~~~L~~~~~~~~~~ll~E~~~i~~~R~~l~~~l~~L~~A~~~l~~~~ 623 (625)
||||+.+++.||.+|++.||+++ .+++||+|||+|++||++|++++++|++|+++|.+|.
T Consensus 548 ~~lv~~~~~~lq~~l~~~l~~~~--~~~~ll~E~~~~~~~R~~l~~~~~~L~~A~~~l~~~~ 607 (608)
T 3szr_A 548 FFMLQTYGQQLQKAMLQLLQDKD--TYSWLLKERSDTSDKRKFLKERLARLTQARRRLAQFP 607 (608)
T ss_dssp HHTTHHHHHHHHHHHHTTTTCHH--HHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcch--hHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999775 4999999999999999999999999999999999984
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=7.6e-50 Score=423.76 Aligned_cols=328 Identities=75% Similarity=1.175 Sum_probs=290.9
Q ss_pred hhhhHHHHHHHHHHHHHhccCCC--CCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecC
Q 006928 4 MTSLIGLINKIQRACTVLGDHGG--EGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTE 81 (625)
Q Consensus 4 ~~~l~~~~~~l~~~~~~~~~~~~--~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~ 81 (625)
||.||+++|+||++++.+|..+. .++.+..++|+|+|||++|||||||||+|+|.+|+|++.++|||+|+++++.+++
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred ChhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC
Confidence 89999999999999999986432 4455667999999999999999999999999999999999999999999998876
Q ss_pred CC-CcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHH
Q 006928 82 GG-TDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVE 160 (625)
Q Consensus 82 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~ 160 (625)
.. ..|+.+.+.++..+.+|..+..++..++....|.+.+|+.+++.+++.+|+.++++||||||+.+....+|+.++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~ 160 (360)
T 3t34_A 81 DGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVK 160 (360)
T ss_dssp SCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHH
T ss_pred CcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHH
Confidence 65 77889999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEE
Q 006928 161 DIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGI 240 (625)
Q Consensus 161 ~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 240 (625)
.+..++..|++++|++|+++++++.+..+++++.+++.+++.+.|+|+|+||+|++++++...+.+.+....+++||++|
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 240 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEE
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEE
Confidence 99999999999999999999999989888999999999999999999999999999888777888888888999999999
Q ss_pred EeCChhhhhccCCHHHHHHHHHhhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q 006928 241 VNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRI 320 (625)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~eL~~l 320 (625)
+++|+++++...+...+...|..||.++++|..+..++|+..|+++|+++|.+||+++||.+...|+..+.+++++|.+|
T Consensus 241 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~l 320 (360)
T 3t34_A 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRL 320 (360)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC----
T ss_pred EECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhH
Q 006928 321 GRPIGVDSGAQ 331 (625)
Q Consensus 321 g~~~~~~~~~~ 331 (625)
|++++.+..++
T Consensus 321 g~~~~~~~~~~ 331 (360)
T 3t34_A 321 GKPIAHGTDSR 331 (360)
T ss_dssp -----------
T ss_pred CCCCCCCHHHH
Confidence 99988766543
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=5.6e-47 Score=400.47 Aligned_cols=339 Identities=51% Similarity=0.810 Sum_probs=307.7
Q ss_pred hhhhhHHHHHHHHHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCC
Q 006928 3 TMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEG 82 (625)
Q Consensus 3 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~ 82 (625)
.|+.|++++|+|||.+..+|... .+++|+|+|||.||||||||+|+|+|.+|+|++.++||++|+++++.+.+
T Consensus 5 ~~~~l~~~~~~l~d~l~~~g~~~------~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~- 77 (353)
T 2x2e_A 5 SMEDLIPLVNRLQDAFSAIGQNA------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNAT- 77 (353)
T ss_dssp -CCSCHHHHHHHHHHHHTTTCGG------GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECS-
T ss_pred hHHHHHHHHHHHHHHHHHcCCCC------CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCC-
Confidence 58999999999999999988642 26899999999999999999999999999999999999999999987763
Q ss_pred CCcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHH
Q 006928 83 GTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDI 162 (625)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i 162 (625)
.+|+++.+.++..++++..+..++++.+.++.|.+.+++..++.+++++|+..+++||||||+.+.+..+|++++.+.+
T Consensus 78 -~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~ 156 (353)
T 2x2e_A 78 -TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQI 156 (353)
T ss_dssp -SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHH
T ss_pred -ccceeeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHH
Confidence 5899999999999999999999999998889888899999999999999999999999999999988888898888999
Q ss_pred HHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEe
Q 006928 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVN 242 (625)
Q Consensus 163 ~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~ 242 (625)
.+++..|+.+++++||+|++++.++.++++..+++.+++.+.|+++|+||+|+++.+.+..+++.+...++++||+.+++
T Consensus 157 ~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~ 236 (353)
T 2x2e_A 157 RDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVN 236 (353)
T ss_dssp HHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCC
T ss_pred HHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEe
Confidence 99999999999999999999999999999888999999999999999999999987766677777777788899999999
Q ss_pred CChhhhhccCCHHHHHHHHHhhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC
Q 006928 243 RSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGR 322 (625)
Q Consensus 243 ~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~eL~~lg~ 322 (625)
+|+.+.....+.......|.+||+.++.|.....++|+..|++.|++.|..|+++++|++...+...+..++.++..++.
T Consensus 237 ~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~~ 316 (353)
T 2x2e_A 237 RSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKN 316 (353)
T ss_dssp CCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99987766677777778899999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCchhH--HHHHHHHHHHHHHHHHHh
Q 006928 323 PIGVDSGAQ--LYTILEMCRAFERVFKEH 349 (625)
Q Consensus 323 ~~~~~~~~~--~~~l~~~~~~f~~~~~~~ 349 (625)
.++.++..+ +.++++++++|++.|...
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 345 (353)
T 2x2e_A 317 FRPDKHGTDSRVDEMLRMYHALKEALSII 345 (353)
T ss_dssp HCCCSSSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHHh
Confidence 766655443 378999999999998753
No 5
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=8.3e-40 Score=340.26 Aligned_cols=309 Identities=51% Similarity=0.822 Sum_probs=244.0
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecC---
Q 006928 5 TSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTE--- 81 (625)
Q Consensus 5 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~--- 81 (625)
|.||+++|+||+++..+|... +++|+|+|||.+|||||||+|+|+|.+++|++.++||++|+++++.+.+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~-------~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~ 73 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSDP-------LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIAD 73 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSCT-------TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCT
T ss_pred CchHHHHHHHHHHHHHcCCCC-------CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcc
Confidence 579999999999998888642 5899999999999999999999999999999999999999999877753
Q ss_pred ---CCCcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccH
Q 006928 82 ---GGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESI 158 (625)
Q Consensus 82 ---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~ 158 (625)
....|+.+.+.++..+.++.++.+++.+.+.++.|.+.+|+.+++.+++++|+..+++||||||+.+.+..++++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~ 153 (315)
T 1jwy_B 74 DGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDI 153 (315)
T ss_dssp TSCCCCCEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CS
T ss_pred cccchhhhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhH
Confidence 24789999999999999999999999999888888888999999999999999999999999999876666677778
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeE
Q 006928 159 VEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWV 238 (625)
Q Consensus 159 ~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~ 238 (625)
.+.+..++..|++++|++|+++++++.++...+...+++.+++.+.|+++|+||+|+.+......+.+.+....++.+|+
T Consensus 154 ~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 233 (315)
T 1jwy_B 154 EQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFI 233 (315)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeE
Confidence 88889999999999999999888777777766666788889988999999999999998766556777654556668999
Q ss_pred EEEeCChhhhhccCCHHHHHHHHHhhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 006928 239 GIVNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELD 318 (625)
Q Consensus 239 ~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~eL~ 318 (625)
.+.++|+.+++.+....+....+..||..+++|..+..+.|+..|...+++.++.++++++|++...++..+.+++++|.
T Consensus 234 ~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~l~ 313 (315)
T 1jwy_B 234 GVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGELS 313 (315)
T ss_dssp ECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred EEecCChhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999877677777766777789988888887778999999999999999999999999999999999999999987
Q ss_pred Hh
Q 006928 319 RI 320 (625)
Q Consensus 319 ~l 320 (625)
+|
T Consensus 314 ~~ 315 (315)
T 1jwy_B 314 TY 315 (315)
T ss_dssp --
T ss_pred hC
Confidence 64
No 6
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=1.1e-37 Score=321.74 Aligned_cols=298 Identities=56% Similarity=0.898 Sum_probs=262.0
Q ss_pred hhhhHHHHHHHHHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCC
Q 006928 4 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG 83 (625)
Q Consensus 4 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~ 83 (625)
|+.|++++++|+|.+..+|... ..++|+|+|||.+|||||||+|+|+|.+++|++.++||++|+++++.+.+
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~------~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~-- 72 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNA------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST-- 72 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCT------TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECS--
T ss_pred CHHHHHHHHHHHHHHHhcCCCC------CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCC--
Confidence 7999999999999999888632 25899999999999999999999999999999999999999999987764
Q ss_pred CcceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHH
Q 006928 84 TDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIE 163 (625)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~ 163 (625)
..|.++.+..+..++++..+...++..+..+.|.+.+++.+.+.+++++|+..+++||||||+......++++++.+.+.
T Consensus 73 ~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~ 152 (299)
T 2aka_B 73 TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIR 152 (299)
T ss_dssp SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHH
T ss_pred cccchhhhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHH
Confidence 57889998888889999999988888888888888899999999999999989999999999998776666777778889
Q ss_pred HHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeC
Q 006928 164 NMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNR 243 (625)
Q Consensus 164 ~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~ 243 (625)
.++..|++.++++||+|++++.++..++...+++.+++.+.|+++|+||+|+.+.+....+.+++....+..||..++++
T Consensus 153 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 232 (299)
T 2aka_B 153 DMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNR 232 (299)
T ss_dssp HHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCC
T ss_pred HHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECC
Confidence 99999999999999888899988888887778999999999999999999999876655666766555667799999999
Q ss_pred ChhhhhccCCHHHHHHHHHhhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006928 244 SQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKN 309 (625)
Q Consensus 244 s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~ 309 (625)
|+.+.....+.......|.+||+..+.|.....++|+..|.+.|++.+..|+++++|++...++.+
T Consensus 233 SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~ 298 (299)
T 2aka_B 233 SQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 298 (299)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 997655555666777778899988888998888999999999999999999999999999998765
No 7
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=315.92 Aligned_cols=260 Identities=11% Similarity=0.169 Sum_probs=189.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCC---CCchhHhHHhhhhHHHhccCCccccCc----hhhHHHHHHhhccCCCCC
Q 006928 328 SGAQLYTILEMCRAFERVFKEHLDGGRA---GGDRIYGVFDHQLPAALKKLPFDRHLS----TRNVQKVVSEADGYQPHL 400 (625)
Q Consensus 328 ~~~~~~~l~~~~~~f~~~~~~~~~g~~~---~g~~i~~~f~~~f~~~~~~~~~~~~~~----~~~i~~~i~~~~G~~p~~ 400 (625)
...+..+|++.++.|++.+.+++.|.+. |+.|++..+...|.+|...++...... .++|....++++|+.++.
T Consensus 3 ~~e~~~FLidkI~~F~~di~~l~~Gee~~~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGrELPg 82 (271)
T 3ljb_A 3 ENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELPG 82 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecccCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCcccCC
Confidence 3567889999999999999999999863 567999999999998877554211111 256667778999999999
Q ss_pred CCchhHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006928 401 IAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTLQSDIAAAATEALEKFRDESRKTVLRLV 480 (625)
Q Consensus 401 ~~pe~af~~li~~~i~~l~~Ps~~~v~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~~~~~l~~~~~~a~~~i~~li 480 (625)
|+|+.+|+.+|++||++|++||++|++.|++++.+++.++.. .+|.|||+|++.+.+++.+++.+|..+|+++|+++|
T Consensus 83 Fv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~--~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~~~~ 160 (271)
T 3ljb_A 83 FVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHF 160 (271)
T ss_dssp CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988775 599999999999999999999999999999999999
Q ss_pred HHhcccccHH-HhhhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006928 481 DMESSYLTVE-FFRKLSEQPERSASDKNASDKNAPDRNAPPPGPQNPERFSD-YHFRRIGSNVSGYIGMVCDTLKNSIPK 558 (625)
Q Consensus 481 ~~E~~yint~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~v~aYf~iv~k~i~D~VPk 558 (625)
+||+.+||+| .|....+.+......+. +..+ ..+.+.... .... +.+.+|+.|+.|||+||++|++|+|||
T Consensus 161 ~mE~~vytqD~~Y~~~l~~~r~~~~~~~---~~~~--~~~~~~~~~--~~~~~~~~~Ei~~~l~sYf~i~~~rl~d~IP~ 233 (271)
T 3ljb_A 161 QMEQIVYCQDQVYRGALQKVREKELEEE---KKKK--SWDFGAFQS--SSATDSSMEEIFQHLMAYHQEASKRISSHIPL 233 (271)
T ss_dssp HHHTSCC-----------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccCCHHHHHHHHHHHHHHhccc---cccc--ccccccccC--CCCccchHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 9999767665 44432222221100000 0000 000000001 1122 457899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCCChHH
Q 006928 559 AVVYCQVLAAKRSLLNQFYAHVGRQEKERLGKMLDEDPQL 598 (625)
Q Consensus 559 ~I~~~lV~~~~~~l~~~L~~~L~~~~~~~~~~ll~E~~~i 598 (625)
+|+|+||+.+++.||.+|++.||+++ .+++||+||+++
T Consensus 234 ~I~~~ll~~~~~~lQ~~ml~~l~~~~--~~~~LL~E~~d~ 271 (271)
T 3ljb_A 234 IIQFFMLQTYGQQLQKAMLQLLQDKD--TYSWLLKERSDT 271 (271)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTSCGG--GHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchh--hHHHHhcCCCCC
Confidence 99999999999999999999999986 499999999985
No 8
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.81 E-value=9e-18 Score=191.26 Aligned_cols=173 Identities=18% Similarity=0.258 Sum_probs=114.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHH---HHH
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEI---SDE 110 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~ 110 (625)
+.+.|+|+|.+|+|||||+|+|+|.+++|++..+||++|+.+.+ ++.......+.........++..+...+ .+.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~--g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRY--GPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEE--CSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEe--CCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 45689999999999999999999999999999999999999874 3222111112111111112222222111 011
Q ss_pred HhhhhCCCCccccccEEEEEecCCC---CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc
Q 006928 111 TDRITGKSKQISNIPIQLSIYSPNV---VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI 187 (625)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~---~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~ 187 (625)
...+.+.+.........++++.|.. .+++||||||+..... ....+..|++++|++|+ |++++..+
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----------~~~~~~~~i~~aD~vL~-Vvda~~~~ 214 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----------RNELSLGYVNNCHAILF-VMRASQPC 214 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----------CHHHHTHHHHSSSEEEE-EEETTSTT
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----------HHHHHHHHHHhCCEEEE-EEeCCCcc
Confidence 1122233334455667777877754 4899999999876432 25678899999997666 55666666
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 188 ATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 188 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+..+...+.+.+...+.|+++|+||+|+....
T Consensus 215 s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 215 TLGERRYLENYIKGRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp CHHHHHHHHHHTTTSCCCEEEEEECGGGGGGG
T ss_pred chhHHHHHHHHHHhhCCCEEEEEECccccccc
Confidence 65555434456676788999999999998653
No 9
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.72 E-value=2.1e-17 Score=170.55 Aligned_cols=240 Identities=18% Similarity=0.231 Sum_probs=138.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+++|.+|||||||+|+|+|.++. +++..|.. |
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~-----i~s~~~~t-----T--------------------------------- 45 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVS-----IISPKAGT-----T--------------------------------- 45 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS-----CCCSSSCC-----C---------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcc-----ccCCCCCc-----e---------------------------------
Confidence 5668999999999999999999999873 33333300 0
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
.+.+......+...+++||||||+.+... ...+.+.+...+..|++.+|++++++ +++......+..
T Consensus 46 ---------~~~~~~~~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~il~Vv-D~~~~~~~~~~~ 112 (308)
T 3iev_A 46 ---------RMRVLGVKNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADVILFMI-DATEGWRPRDEE 112 (308)
T ss_dssp ---------CSCEEEEEEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSEEEEEE-ETTTBSCHHHHH
T ss_pred ---------eeEEEEEEecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCEEEEEE-eCCCCCCchhHH
Confidence 00011111122146799999999986441 13366777888899999999877755 555444444433
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccC--CCeEEEEeCChhhhhccCCHHHHHHHHHhhhccCCCC
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQ--HPWVGIVNRSQADINKNVDMIAARRKEREYFETSPEY 271 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~--~g~~~v~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~ 271 (625)
.+...+...+.|+++|+||+|+..........+..-...++ ..++.+...+..++.++...+.... ...+++
T Consensus 113 ~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l------~~~~~~ 186 (308)
T 3iev_A 113 IYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL------PEGEPL 186 (308)
T ss_dssp HHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHS------CBCCCS
T ss_pred HHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhC------ccCCCC
Confidence 22666666678999999999998433332222221011111 2344444433344444443333332 223322
Q ss_pred Cc---cccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHhCCCCCCCchhHHHHH
Q 006928 272 GH---LASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEIN--AELDRIGRPIGVDSGAQLYTI 335 (625)
Q Consensus 272 ~~---~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~--~eL~~lg~~~~~~~~~~~~~l 335 (625)
.. +.+.--.....+.+++.++.++++++|+..+...+.+.+.+ ..+.++...+.+++++|..++
T Consensus 187 ~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~~~~~~i~a~i~ve~~~~k~i~ 255 (308)
T 3iev_A 187 FPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEIIVDRENLKPII 255 (308)
T ss_dssp SCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTSEEEEEEEEESSGGGHHHH
T ss_pred CCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCCCCeEEEEEEEEEccCCcceEE
Confidence 22 11222223455889999999999999998776555444322 122234444445556666544
No 10
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.70 E-value=1.6e-17 Score=170.69 Aligned_cols=235 Identities=19% Similarity=0.236 Sum_probs=136.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.|++||.+|+|||||+|+|+|.++ .+++..|. +| ...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~-----~ivs~~~~-----tT------------------------------r~~ 45 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKV-----APISPRPQ-----TT------------------------------RKR 45 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCC-----SCCCSSSC-----CC------------------------------CSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCce-----eeecCCCC-----ce------------------------------eEE
Confidence 567899999999999999999999987 33344431 00 000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
+.+ +...+..+++||||||+.+... .+.+.+...+..|++.+|++++++ +++..+...+.
T Consensus 46 i~~-------------i~~~~~~~l~l~DTpG~~~~~~-----~l~~~~~~~~~~~l~~ad~il~Vv-D~~~~~~~~~~- 105 (301)
T 1wf3_A 46 LRG-------------ILTEGRRQIVFVDTPGLHKPMD-----ALGEFMDQEVYEALADVNAVVWVV-DLRHPPTPEDE- 105 (301)
T ss_dssp EEE-------------EEEETTEEEEEEECCCCCCCCS-----HHHHHHHHHHHHHTSSCSEEEEEE-ETTSCCCHHHH-
T ss_pred EEE-------------EEEeCCcEEEEecCccccchhh-----HHHHHHHHHHHHHHhcCCEEEEEE-ECCCCCChHHH-
Confidence 001 1122346799999999876432 366677888899999999877755 45444444332
Q ss_pred HHHHHhCCC--CCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCCh---hhhhccCCHHHHHHHHHhhhccC
Q 006928 194 KLAREVDPT--GERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQ---ADINKNVDMIAARRKEREYFETS 268 (625)
Q Consensus 194 ~l~~~~d~~--~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~---~~~~~~~~~~~~~~~e~~~f~~~ 268 (625)
.+.+.+... +.|+++|+||+|+........+.+.. + .++..+++.|+ .+++...+.+.....+.++++..
T Consensus 106 ~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~--~---~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~~ 180 (301)
T 1wf3_A 106 LVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHE--L---LPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPE 180 (301)
T ss_dssp HHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHH--T---STTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSCT
T ss_pred HHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHH--h---cCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCCCc
Confidence 233444433 78999999999998643212333321 1 45555666666 44444443333222222222221
Q ss_pred CCC-CccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHH
Q 006928 269 PEY-GHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPIGVDSGAQLYTIL 336 (625)
Q Consensus 269 ~~~-~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l~ 336 (625)
..+ .+.+.+ ....+.+++.+++.+.+++|+......+.+.+.++....+...+.++++++..++.
T Consensus 181 ~~~~td~~~~---~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~~~~~i~~~i~ve~~~~k~iii 246 (301)
T 1wf3_A 181 DYAKSDQTFG---EWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPSQKAIVI 246 (301)
T ss_dssp TCCSBSSCHH---HHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEEEEESSHHHHHHHH
T ss_pred ccccCCCCHH---HHHHHHHHHHHHHHhhcccCceEEEEEEEEEecCCCeEEEEEEEEEeeCCceEEEE
Confidence 112 222222 23568889999999999999987765554442111111222333445566665543
No 11
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.58 E-value=4.1e-16 Score=160.37 Aligned_cols=208 Identities=16% Similarity=0.225 Sum_probs=118.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccc-cccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
..+.|++||.+|+|||||+|+|+|..+.+.+..+ +|+..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~---------------------------------------- 46 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHR---------------------------------------- 46 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSC----------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceee----------------------------------------
Confidence 5668999999999999999999998762222111 12211
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCc-ccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLT-KVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~-~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~ 191 (625)
..| +...+..+++|+||||+. .... .+.+.+...+..+++.+|.+++++ ++.. +...+
T Consensus 47 -~~g-------------i~~~~~~~i~~iDTpG~~~~~~~-----~l~~~~~~~~~~~l~~~D~vl~Vv-d~~~-~~~~~ 105 (301)
T 1ega_A 47 -IVG-------------IHTEGAYQAIYVDTPGLHMEEKR-----AINRLMNKAASSSIGDVELVIFVV-EGTR-WTPDD 105 (301)
T ss_dssp -EEE-------------EEEETTEEEEEESSSSCCHHHHH-----HHHHHHTCCTTSCCCCEEEEEEEE-ETTC-CCHHH
T ss_pred -EEE-------------EEEECCeeEEEEECcCCCccchh-----hHHHHHHHHHHHHHhcCCEEEEEE-eCCC-CCHHH
Confidence 011 112233578999999986 2111 122223334567788899776655 4444 55544
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhh---hhccCCHHHHHHHHHhhhccC
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQAD---INKNVDMIAARRKEREYFETS 268 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~---~~~~~~~~~~~~~e~~~f~~~ 268 (625)
. .+++.+...+.|.++|+||+|+........+.+. .....+|+..+++.|+.. +....+.+.....+.++++..
T Consensus 106 ~-~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~--~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~~~~ 182 (301)
T 1ega_A 106 E-MVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQ--FLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPE 182 (301)
T ss_dssp H-HHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHH--HHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCCSSCT
T ss_pred H-HHHHHHHhcCCCEEEEEECcccCccHHHHHHHHH--HHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcCCCCCCc
Confidence 3 3556666668999999999999863223333333 122234555566777643 333322222221122222211
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 006928 269 PEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINK 308 (625)
Q Consensus 269 ~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~ 308 (625)
....+.+.+ ....+.+++.+++.+.+++|+....+.+
T Consensus 183 ~~~~d~~~~---~~~~e~~re~l~~~l~~e~p~~~~v~i~ 219 (301)
T 1ega_A 183 DYITDRSQR---FMASEIIREKLMRFLGAELPYSVTVEIE 219 (301)
T ss_dssp TCCSCCSHH---HHHHHHHHHHHHHHHGGGCCTTEEEEEE
T ss_pred cccCCCCHH---HHHHHHHHHHHHHHhCCCCCeEEEEEEE
Confidence 112222211 2345778999999999999987655444
No 12
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.51 E-value=2e-14 Score=144.22 Aligned_cols=152 Identities=18% Similarity=0.214 Sum_probs=90.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.|.|+++|.+|+|||||+|+|+|..+ ..+.- .+|.-..
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~---------------------------------------- 39 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKK---------------------------------------- 39 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEE----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEE----------------------------------------
Confidence 37999999999999999999999864 22211 1111110
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCCCccccHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATSD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi--~~~~~iIl~v~~a~~d~~~~~ 191 (625)
.-. +.. +...++||||||+.+....++..... +.+...|+ +++|++|++++..+ ...
T Consensus 40 -----------~~~--~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~vi~VvDas~----~~~ 98 (256)
T 3iby_A 40 -----------TGE--FLL-GEHLIEITDLPGVYSLVANAEGISQD---EQIAAQSVIDLEYDCIINVIDACH----LER 98 (256)
T ss_dssp -----------EEE--EEE-TTEEEEEEECCCCSSCC------CHH---HHHHHHHHHHSCCSEEEEEEEGGG----HHH
T ss_pred -----------EEE--EEE-CCeEEEEEeCCCcccccccccCCCHH---HHHHHHHHhhCCCCEEEEEeeCCC----chh
Confidence 001 111 12478999999998765322111222 45667788 89998887665543 234
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCcccc--HHHHHhCcccccCCCeEEEEeCChhhhhcc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTN--ALEVLEGRSYRLQHPWVGIVNRSQADINKN 251 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (625)
.+.+..++...+.|+++|+||+|+...... ..+.+. ..++.+++.+...+..++++.
T Consensus 99 ~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~---~~lg~~vi~~SA~~g~gi~el 157 (256)
T 3iby_A 99 HLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLE---SLLGCSVIPIQAHKNIGIPAL 157 (256)
T ss_dssp HHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHH---HHHCSCEEECBGGGTBSHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHH---HHcCCCEEEEECCCCCCHHHH
Confidence 455777777789999999999999765421 111121 223445555555444444433
No 13
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.47 E-value=1.1e-13 Score=135.28 Aligned_cols=128 Identities=23% Similarity=0.335 Sum_probs=83.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcc-ccccc-ccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFL-PRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~l-P~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (625)
..|.|+|+|.+|+|||||+|+|+|.+++ ..+.. .+|+.+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--------------------------------------- 68 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--------------------------------------- 68 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE---------------------------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce---------------------------------------
Confidence 5789999999999999999999998732 11111 112221
Q ss_pred hhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcC---CCEEEEEEecCCCccc
Q 006928 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK---PSCIILAISPANQDIA 188 (625)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~---~~~iIl~v~~a~~d~~ 188 (625)
....+...+...++||||||+..... +....+.+..++..|+.. +|.+|+ |++++..+.
T Consensus 69 --------------~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~-v~d~~~~~~ 130 (223)
T 4dhe_A 69 --------------NYFSVGPAAEPVAHLVDLPGYGYAEV---PGAAKAHWEQLLSSYLQTRPQLCGMIL-MMDARRPLT 130 (223)
T ss_dssp --------------EEEEESCTTSCSEEEEECCCCCSSCC---CSTHHHHHHHHHHHHHHHCTTEEEEEE-EEETTSCCC
T ss_pred --------------EEEEecCCCCCcEEEEcCCCCCcccC---ChhhHHHHHHHHHHHHhcCcCcCEEEE-EEeCCCCCC
Confidence 11112223346899999999875432 233466677888888876 555555 555555444
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 189 TSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 189 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
..+ ..+.+.+...+.|+++|+||+|+.+..
T Consensus 131 ~~~-~~~~~~l~~~~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 131 ELD-RRMIEWFAPTGKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp HHH-HHHHHHHGGGCCCEEEEEECGGGSCHH
T ss_pred HHH-HHHHHHHHhcCCCEEEEEeccccCChh
Confidence 333 335555655678999999999998653
No 14
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.44 E-value=2.7e-13 Score=136.17 Aligned_cols=127 Identities=19% Similarity=0.199 Sum_probs=80.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccc--cccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (625)
..+.|+|+|.+|||||||+|+|+|...++.+..+ +|+......
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~----------------------------------- 65 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQ----------------------------------- 65 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEE-----------------------------------
Confidence 4578999999999999999999998865544332 333331111
Q ss_pred hhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006928 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (625)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~ 191 (625)
+ ..+...+.||||||+...... .+...+.+...+..+++.+|++|+++... . +...+
T Consensus 66 ------------------~-~~~~~~i~iiDTpG~~~~~~~--~~~~~~~i~~~~~~~~~~~d~il~V~d~~-~-~~~~~ 122 (260)
T 2xtp_A 66 ------------------G-SWGNREIVIIDTPDMFSWKDH--CEALYKEVQRCYLLSAPGPHVLLLVTQLG-R-YTSQD 122 (260)
T ss_dssp ------------------E-EETTEEEEEEECCGGGGSSCC--CHHHHHHHHHHHHHHTTCCSEEEEEEETT-C-CCHHH
T ss_pred ------------------E-EeCCCEEEEEECcCCCCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEEeCC-C-CCHHH
Confidence 0 112246899999998865432 22233344566677889999887766544 2 43332
Q ss_pred --HHHHHHHhCCC--CCceEEEec-cCcccCc
Q 006928 192 --AIKLAREVDPT--GERTFGVLT-KLDLMDK 218 (625)
Q Consensus 192 --~l~l~~~~d~~--~~rti~Vlt-K~D~~~~ 218 (625)
....+..+... +.+.++|+| |+|+.+.
T Consensus 123 ~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 123 QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 23334433221 467888888 9999843
No 15
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.43 E-value=5.2e-13 Score=135.30 Aligned_cols=137 Identities=18% Similarity=0.293 Sum_probs=80.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
-.|+|||.+|+|||||+|+|+|.+.++.+...++..+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~------------------------------------------- 45 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI------------------------------------------- 45 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC-------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc-------------------------------------------
Confidence 3799999999999999999999887554431111100
Q ss_pred CCCCccccccEEEEEecCC-CCCcEEEeCCCCcccCCCC-CCccHHHHHHHHHHHhhcC-------------CCEEEEEE
Q 006928 116 GKSKQISNIPIQLSIYSPN-VVNLTLIDLPGLTKVAVEG-QPESIVEDIENMVRSYVEK-------------PSCIILAI 180 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~-~~~ltlvDlPGi~~~~~~~-q~~~~~~~i~~~v~~yi~~-------------~~~iIl~v 180 (625)
..++..+.....+...+ ...++||||||+....... .-..+...+.+....|+.. +|++++++
T Consensus 46 --~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i 123 (274)
T 3t5d_A 46 --KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFI 123 (274)
T ss_dssp -----CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEE
T ss_pred --CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEe
Confidence 00111111122222211 1378999999986543221 1122333344444666653 77888888
Q ss_pred ecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 181 SPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 181 ~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.++...+...+. .+.+.+.. +.|+|+|+||+|++...
T Consensus 124 ~~~~~~~~~~d~-~~l~~l~~-~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 124 APSGHGLKPLDI-EFMKRLHE-KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp CSCCSSCCHHHH-HHHHHHTT-TSCEEEEESSGGGSCHH
T ss_pred cCCCCCCCHHHH-HHHHHHhc-cCCEEEEEeccCCCCHH
Confidence 787766655554 36777777 89999999999998643
No 16
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.42 E-value=2.9e-13 Score=149.95 Aligned_cols=165 Identities=18% Similarity=0.246 Sum_probs=97.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcc--cccccccccccEEEEEeecCCCCcceeeccCCCCcc-CChHHHHHHHHHH
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFL--PRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKF-TDFAAVRKEISDE 110 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~l--P~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~ 110 (625)
..|.|+|+|.+|+|||||+|+|+|.++. +.+..++|.+.+.+. +.+.+. .. ++... .+. ...
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~--~~~~~~----i~--~g~~l~~~~-------~~~ 128 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVM--HGETEG----TV--PGNALVVDP-------EKP 128 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEE--CCSSSE----EE--CCC----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEE--ECCccc----cc--CCceeeecC-------ccc
Confidence 6799999999999999999999999864 466666776554443 211100 00 00000 000 000
Q ss_pred HhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHH--HHHHHHHhhcCCCEEEEEEecCCCccc
Q 006928 111 TDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVED--IENMVRSYVEKPSCIILAISPANQDIA 188 (625)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~--i~~~v~~yi~~~~~iIl~v~~a~~d~~ 188 (625)
...+...+..+...++++.+.++...+++||||||+...... .+.+. +..++..|+..+|++|+++.+.+.+..
T Consensus 129 ~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~----~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~ 204 (550)
T 2qpt_A 129 FRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQ----RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEIS 204 (550)
T ss_dssp ---------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCC
T ss_pred HHHHhhhcccccccceEEeccccccCCEEEEECcCCCCcchh----HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCC
Confidence 011111123445556666554443357999999998763221 01111 356778889999987776654432344
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 189 TSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 189 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.. ...+++.+...+.++++|+||+|+++.
T Consensus 205 ~~-~~~~l~~l~~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 205 DE-FSEAIGALRGHEDKIRVVLNKADMVET 233 (550)
T ss_dssp HH-HHHHHHHTTTCGGGEEEEEECGGGSCH
T ss_pred HH-HHHHHHHHHhcCCCEEEEEECCCccCH
Confidence 33 334677777778899999999999865
No 17
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.42 E-value=4.5e-13 Score=133.63 Aligned_cols=128 Identities=18% Similarity=0.205 Sum_probs=74.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccc--cccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (625)
.-.+|++||.+|+|||||+|+|+|..++..+... +|+.+....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~----------------------------------- 64 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGS----------------------------------- 64 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEE-----------------------------------
Confidence 3458999999999999999999999876544332 444442221
Q ss_pred hhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006928 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (625)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~ 191 (625)
+ ..+...++||||||+....... .+.....+......+...+|++++++. ++. +...+
T Consensus 65 ------------------~-~~~~~~i~liDTPG~~~~~~~~-~~~~~~~i~~~~~~~~~~~d~il~V~d-~~~-~~~~~ 122 (247)
T 3lxw_A 65 ------------------R-RWDKCHVEVVDTPDIFSSQVSK-TDPGCEERGHCYLLSAPGPHALLLVTQ-LGR-FTAQD 122 (247)
T ss_dssp ------------------E-EETTEEEEEEECCSCSSTTHHH-HSTTSHHHHHHHHHHTTCCSEEEEEEE-TTB-CCHHH
T ss_pred ------------------E-EECCcEEEEEECCCCCCCCCCc-HHHHHHHHHHHHHhcCCCCCEEEEEEe-CCC-CCHHH
Confidence 1 1123568999999997543220 011122222222334489998777554 443 43332
Q ss_pred --HHHHHHHh-CC--CCCceEEEeccCcccCc
Q 006928 192 --AIKLAREV-DP--TGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 --~l~l~~~~-d~--~~~rti~VltK~D~~~~ 218 (625)
.++.+.++ .+ .+.++|+|.||.|+.+.
T Consensus 123 ~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 123 QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 33444443 22 25789999999999653
No 18
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.41 E-value=4.7e-13 Score=127.67 Aligned_cols=126 Identities=25% Similarity=0.396 Sum_probs=77.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.|+|+|.+|+|||||+|+|+|..+.+.... .|
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~----------------------------------------- 56 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSS----KP----------------------------------------- 56 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCC----CC-----------------------------------------
Confidence 578999999999999999999999875321110 00
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCC---CEEEEEEecCCCccccH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKP---SCIILAISPANQDIATS 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~---~~iIl~v~~a~~d~~~~ 190 (625)
| .+.......+ ...+.||||||+..... +.+..+.+..+...|+..+ |++++++ +++......
T Consensus 57 --~----~t~~~~~~~~----~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~-d~~~~~~~~ 122 (195)
T 1svi_A 57 --G----KTQTLNFYII----NDELHFVDVPGYGFAKV---SKSEREAWGRMIETYITTREELKAVVQIV-DLRHAPSND 122 (195)
T ss_dssp ---------CCEEEEEE----TTTEEEEECCCBCCCSS---CHHHHHHHHHHHHHHHHHCTTEEEEEEEE-ETTSCCCHH
T ss_pred --C----ceeeEEEEEE----CCcEEEEECCCCCcccc---CHHHHHHHHHHHHHHHhhhhcCCEEEEEE-ECCCCCCHH
Confidence 0 0000011111 13699999999765432 3334566777888888766 7766654 555444433
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+ ..+.+.+...+.|+++|+||+|+.+..
T Consensus 123 ~-~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 123 D-VQMYEFLKYYGIPVIVIATKADKIPKG 150 (195)
T ss_dssp H-HHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred H-HHHHHHHHHcCCCEEEEEECcccCChH
Confidence 3 223444444678999999999998754
No 19
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.41 E-value=2.1e-13 Score=147.57 Aligned_cols=162 Identities=17% Similarity=0.269 Sum_probs=91.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
+|.|++||.+|+|||||+|+|+|..+ .++...|...+
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~-----~~v~~~~g~T~-------------------------------------- 37 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKK-----AIVEDEEGVTR-------------------------------------- 37 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC---------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-----ceecCCCCCcc--------------------------------------
Confidence 48999999999999999999999864 22233331111
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
+.+.-.+.. +...+.||||||+..... +.+.+.+...+..|++++|++++++ ++...+...+. .
T Consensus 38 ---------d~~~~~~~~-~~~~~~l~DT~G~~~~~~----~~~~~~~~~~~~~~~~~ad~il~V~-D~~~~~~~~d~-~ 101 (439)
T 1mky_A 38 ---------DPVQDTVEW-YGKTFKLVDTCGVFDNPQ----DIISQKMKEVTLNMIREADLVLFVV-DGKRGITKEDE-S 101 (439)
T ss_dssp ---------CCSEEEEEE-TTEEEEEEECTTTTSSGG----GCCCHHHHHHHHHHHTTCSEEEEEE-ETTTCCCHHHH-H
T ss_pred ---------ceeeEEEEE-CCeEEEEEECCCcccccc----chHHHHHHHHHHHHHHhCCEEEEEE-ECCCCCCHHHH-H
Confidence 111111111 124589999999875321 2244567888899999999877755 55554544332 2
Q ss_pred HHHHhCCCCCceEEEeccCcccCc-cccH-HHHHhCcccccCC-CeEEEEeCChhhhhccCCHHHHHHH
Q 006928 195 LAREVDPTGERTFGVLTKLDLMDK-GTNA-LEVLEGRSYRLQH-PWVGIVNRSQADINKNVDMIAARRK 260 (625)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~-~~~~-~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (625)
++..+...+.++++|+||+|+.+. .... .++ ..++. .++.+...+..++.++.+.+.....
T Consensus 102 i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~-----~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 102 LADFLRKSTVDTILVANKAENLREFEREVKPEL-----YSLGFGEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp HHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHH-----GGGSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEeCCCCccccHHHHHHHH-----HhcCCCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 333333347899999999998643 1111 122 22333 2455555555566665555544443
No 20
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.40 E-value=1.1e-12 Score=124.78 Aligned_cols=124 Identities=22% Similarity=0.203 Sum_probs=77.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccc-cccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
..|+|+|+|.+|+|||||+|+|+|..+.+.+..+ +|+.+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~---------------------------------------- 61 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSI---------------------------------------- 61 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCE----------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCe----------------------------------------
Confidence 6789999999999999999999998742211111 11111
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCC---CEEEEEEecCCCcccc
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKP---SCIILAISPANQDIAT 189 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~---~~iIl~v~~a~~d~~~ 189 (625)
... . ....+.+|||||+..... +....+.+..+...|++.+ +.+++ |.+++.....
T Consensus 62 -------------~~~-~---~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~-v~d~~~~~~~ 120 (195)
T 3pqc_A 62 -------------NFY-L---VNSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFL-LVDGRIPPQD 120 (195)
T ss_dssp -------------EEE-E---ETTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEE-EEETTSCCCH
T ss_pred -------------EEE-E---ECCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEE-EecCCCCCCH
Confidence 000 0 124689999999765322 2223455677777888765 66555 4455444333
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.+. .+.+.+...+.|+++|+||+|+.+..
T Consensus 121 ~~~-~~~~~~~~~~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 121 SDL-MMVEWMKSLNIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp HHH-HHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred HHH-HHHHHHHHcCCCEEEEEEChhcCChH
Confidence 332 24444444578999999999998653
No 21
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.40 E-value=3.8e-13 Score=146.36 Aligned_cols=126 Identities=22% Similarity=0.321 Sum_probs=78.6
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
...|.|++||.+|+|||||+|+|+|..+ +.+...|.
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~-----~~v~~~~g--------------------------------------- 56 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERI-----SIVEDTPG--------------------------------------- 56 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEE-----C----------------------------------------------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCCC---------------------------------------
Confidence 4689999999999999999999999765 22222221
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
++.+.....+.. ....+++|||||+.... +.+.+.+...+..|++.+|++|+++ ++...+...+.
T Consensus 57 --------~t~~~~~~~~~~-~~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~Vv-D~~~~~~~~d~ 121 (456)
T 4dcu_A 57 --------VTRDRIYSSAEW-LNYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEADVIIFMV-NGREGVTAADE 121 (456)
T ss_dssp ------------CEEEECTT-CSSCCEEECCCC-----------CCHHHHHHHHHHHHHHCSEEEEEE-ESSSCSCHHHH
T ss_pred --------cceeEEEEEEEE-CCceEEEEECCCCCCcc-----hHHHHHHHHHHHhhHhhCCEEEEEE-eCCCCCChHHH
Confidence 111111111222 23579999999987322 2357788889999999999877755 55555555443
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+++.+...+.++++|+||+|+.+.
T Consensus 122 -~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 122 -EVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp -HHHHHHTTCCSCEEEEEECC-----
T ss_pred -HHHHHHHHcCCCEEEEEECccchhh
Confidence 3777777789999999999998754
No 22
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.40 E-value=6.4e-13 Score=143.69 Aligned_cols=124 Identities=23% Similarity=0.330 Sum_probs=75.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
.|.|++||.+|+|||||+|+|+|..+ .++...|..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~-----~~v~~~~g~---------------------------------------- 37 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI-----SIVEDTPGV---------------------------------------- 37 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC-----C------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCCCC----------------------------------------
Confidence 58999999999999999999999765 222222211
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
+.+.....+.. +...++||||||+.... .++.+.+..++..|++.+|++|+++ ++.......+. .
T Consensus 38 -------T~d~~~~~~~~-~~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~vv-D~~~~~~~~d~-~ 102 (436)
T 2hjg_A 38 -------TRDRIYSSAEW-LNYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEADVIIFMV-NGREGVTAADE-E 102 (436)
T ss_dssp ----------CEEEECTT-CSSCCEEEC--------------CHHHHHHHHHHHHHHHCSEEEEEE-ETTTCSCHHHH-H
T ss_pred -------ccceEEEEEEE-CCceEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEE-eCCCCCCHHHH-H
Confidence 11111111111 23579999999986432 2266778888999999999877655 55554544443 3
Q ss_pred HHHHhCCCCCceEEEeccCcccCc
Q 006928 195 LAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
+++.+...+.|+++|+||+|+.+.
T Consensus 103 ~~~~l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 103 VAKILYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHHHHTTCCSCEEEEEECCCC---
T ss_pred HHHHHHHcCCCEEEEEECccCccc
Confidence 666677778999999999998764
No 23
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.40 E-value=5.7e-13 Score=122.64 Aligned_cols=120 Identities=21% Similarity=0.253 Sum_probs=74.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.|+|+|+|++|+|||||+|+|.|..+.+.+.. .+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 39 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL----------------------------------------- 39 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CC-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-----------------------------------------
Confidence 47899999999999999999999864211111 111111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~-- 191 (625)
....+.. +...+.|+||||...... ....+...+..+++.+|++|+++.. +..+...+
T Consensus 40 ------------~~~~~~~-~~~~~~l~Dt~G~~~~~~------~~~~~~~~~~~~~~~~~~~i~v~d~-~~~~~~~~~~ 99 (161)
T 2dyk_A 40 ------------KEGVVET-DRGRFLLVDTGGLWSGDK------WEKKIQEKVDRALEDAEVVLFAVDG-RAELTQADYE 99 (161)
T ss_dssp ------------EEEEEEE-TTEEEEEEECGGGCSSSS------CCHHHHHHHHHHTTTCSEEEEEEES-SSCCCHHHHH
T ss_pred ------------eEEEEEe-CCceEEEEECCCCCCccc------hHHHHHHHHHHHHHhCCEEEEEEEC-CCcccHhHHH
Confidence 0111111 123689999999765321 2344567778899999988776544 43333322
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
..++.+. .+.|+++|+||+|+.+.
T Consensus 100 ~~~~~~~---~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 100 VAEYLRR---KGKPVILVATKVDDPKH 123 (161)
T ss_dssp HHHHHHH---HTCCEEEEEECCCSGGG
T ss_pred HHHHHHh---cCCCEEEEEECcccccc
Confidence 2233333 46899999999999865
No 24
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.39 E-value=1.4e-12 Score=120.46 Aligned_cols=150 Identities=18% Similarity=0.194 Sum_probs=86.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
..|+|+|++|+|||||+|+|++..+.+.. ...+.....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~----------------------------------------- 41 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKY-DPTIEDFYR----------------------------------------- 41 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCC-CTTCCEEEE-----------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccC-CCCcceeEE-----------------------------------------
Confidence 37999999999999999999987652211 111110000
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---H
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---A 192 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~ 192 (625)
..+.+ ......+.|+||||.... ..+...|++.+|.+++++...+. ..... +
T Consensus 42 ----------~~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~ 96 (167)
T 1kao_A 42 ----------KEIEV-DSSPSVLEILDTAGTEQF-------------ASMRDLYIKNGQGFILVYSLVNQ-QSFQDIKPM 96 (167)
T ss_dssp ----------EEEEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCH-HHHHHHHHH
T ss_pred ----------EEEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEeCCCH-HHHHHHHHH
Confidence 00001 111234899999994321 45667788899988776654432 11111 1
Q ss_pred H-HHHHHhCCCCCceEEEeccCcccCcccc----HHHHHhCcccccCCCeEEEEeCChhhhhccCCHHH
Q 006928 193 I-KLAREVDPTGERTFGVLTKLDLMDKGTN----ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (625)
Q Consensus 193 l-~l~~~~d~~~~rti~VltK~D~~~~~~~----~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (625)
. .+.+.....+.|+++|+||+|+.+.... ...+. ...+.+|+.+...+..++.+....+.
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 97 RDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA----EEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp HHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH----HHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHH----HHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 1 2334444567899999999999754321 11221 12244566666666666555444433
No 25
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.39 E-value=6.8e-13 Score=131.49 Aligned_cols=128 Identities=17% Similarity=0.261 Sum_probs=75.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccccc--ccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHH
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (625)
..++|++||.+|+|||||+|+|+|..+++.+.. .+|+.+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~----------------------------------- 72 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS----------------------------------- 72 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE-----------------------------------
Confidence 567999999999999999999999987444332 2444432111
Q ss_pred hhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH-
Q 006928 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS- 190 (625)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~- 190 (625)
+.. +...++||||||+...... ..+..+.+...+..+.+.+|++|+++ +++ ++...
T Consensus 73 ------------------~~~-~~~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~-d~~-~~~~~~ 129 (239)
T 3lxx_A 73 ------------------SSW-KETELVVVDTPGIFDTEVP--NAETSKEIIRCILLTSPGPHALLLVV-PLG-RYTEEE 129 (239)
T ss_dssp ------------------EEE-TTEEEEEEECCSCC-------CHHHHHHHHHHHHHTTTCCSEEEEEE-ETT-CCSSHH
T ss_pred ------------------EEe-CCceEEEEECCCccCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEe-eCC-CCCHHH
Confidence 111 1246899999999865432 23345556666677778899877755 443 23222
Q ss_pred -HHHHHHHH-hC-CCCCceEEEeccCcccCcc
Q 006928 191 -DAIKLARE-VD-PTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 191 -~~l~l~~~-~d-~~~~rti~VltK~D~~~~~ 219 (625)
.++..... +. ....++++|+||+|+.+..
T Consensus 130 ~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 130 HKATEKILKMFGERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred HHHHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence 23322221 11 1235899999999998653
No 26
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.39 E-value=5.7e-13 Score=133.70 Aligned_cols=152 Identities=21% Similarity=0.240 Sum_probs=90.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
..+.|+++|++|+|||||+|+|+|..+ ..+.- .+|...
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~---------------------------------------- 42 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEK---------------------------------------- 42 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEE----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEE----------------------------------------
Confidence 346899999999999999999999875 22211 111111
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCCCccccH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATS 190 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi--~~~~~iIl~v~~a~~d~~~~ 190 (625)
.... +.. ....+.||||||..+..... .. +.+...|+ ..+|++|+++...+ . .
T Consensus 43 -----------~~~~--~~~-~~~~~~l~DtpG~~~~~~~~----~~---e~v~~~~~~~~~~d~ii~V~D~t~--~--~ 97 (258)
T 3a1s_A 43 -----------KEGV--FTY-KGYTINLIDLPGTYSLGYSS----ID---EKIARDYLLKGDADLVILVADSVN--P--E 97 (258)
T ss_dssp -----------EEEE--EEE-TTEEEEEEECCCCSSCCSSS----HH---HHHHHHHHHHSCCSEEEEEEETTS--C--H
T ss_pred -----------EEEE--EEE-CCeEEEEEECCCcCccCCCC----HH---HHHHHHHHhhcCCCEEEEEeCCCc--h--h
Confidence 0111 111 22578999999987654321 11 34556676 58998777665443 1 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCccc---cHHHHHhCcccccCCCeEEEEeCChhhhhccCCHH
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGT---NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (625)
..+.+..++...+.|+++|+||+|+..... +...+. ..++.+++.+...+..++.+....+
T Consensus 98 ~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~----~~lg~~vi~~SA~~g~gi~el~~~i 161 (258)
T 3a1s_A 98 QSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQ----KHLGIPVVFTSSVTGEGLEELKEKI 161 (258)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHH----HHHCSCEEECCTTTCTTHHHHHHHH
T ss_pred hHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHH----HHcCCCEEEEEeeCCcCHHHHHHHH
Confidence 334455666667899999999999975432 222221 1234455555555555555544443
No 27
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.38 E-value=7.5e-13 Score=144.00 Aligned_cols=158 Identities=20% Similarity=0.280 Sum_probs=90.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
+.|++||.+|+|||||+|+|+|.++ .+++..|. +|
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~-----a~vs~~~g-----TT----------------------------------- 278 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDR-----AIVTDIPG-----TT----------------------------------- 278 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTB-----CCCCCSSC-----CS-----------------------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCC-----CccCCCCC-----ee-----------------------------------
Confidence 5899999999999999999999875 22333330 00
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCc-ccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLT-KVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~-~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
..+.. -.+.+ +...++||||||+. ......+... -..+..|++.+|.+|++++ ++......+ .+
T Consensus 279 ---~d~~~--~~i~~---~g~~~~l~DTaG~~~~~~~~ve~~g-----i~~~~~~~~~aD~vl~VvD-~s~~~s~~~-~~ 343 (482)
T 1xzp_A 279 ---RDVIS--EEIVI---RGILFRIVDTAGVRSETNDLVERLG-----IERTLQEIEKADIVLFVLD-ASSPLDEED-RK 343 (482)
T ss_dssp ---SCSCC--EEEEE---TTEEEEEEESSCCCSSCCTTCCCCC-----HHHHHHHHHHCSEEEEEEE-TTSCCCHHH-HH
T ss_pred ---eeeEE--EEEec---CCeEEEEEECCCccccchhhHHHHH-----HHHHHHHhhcccEEEEEec-CCCCCCHHH-HH
Confidence 00000 01111 12468999999987 4322111100 2345678899998777655 443333222 33
Q ss_pred HHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 006928 195 LAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (625)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (625)
+...+ .+.|+|+|+||+|+.+.. ...++.. .......++.+...+..+++++...+...
T Consensus 344 il~~l--~~~piivV~NK~DL~~~~-~~~~~~~--~~~~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 344 ILERI--KNKRYLVVINKVDVVEKI-NEEEIKN--KLGTDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp HHHHH--TTSSEEEEEEECSSCCCC-CHHHHHH--HHTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred HHHHh--cCCCEEEEEECccccccc-CHHHHHH--HhcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44445 368999999999997542 2112111 01112356777766666666666555543
No 28
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.38 E-value=3.3e-13 Score=136.76 Aligned_cols=150 Identities=20% Similarity=0.286 Sum_probs=87.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
-+.|+++|.+|+|||||+|+|+|..+ +++.- .+|..+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~---------------------------------------- 41 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERK---------------------------------------- 41 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEE----------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEE----------------------------------------
Confidence 36899999999999999999999874 32211 1122111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCCCccccHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATSD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi--~~~~~iIl~v~~a~~d~~~~~ 191 (625)
.-.+.. +...+.||||||..+........... +.+...|+ +++|++|++++..+ ...
T Consensus 42 -------------~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~ii~VvD~~~----~~~ 100 (274)
T 3i8s_A 42 -------------EGQFST-TDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADLLINVVDASN----LER 100 (274)
T ss_dssp -------------EEEEEC-SSCEEEEEECCCCSCSCC----CCHH---HHHHHHHHHHTCCSEEEEEEEGGG----HHH
T ss_pred -------------EEEEEe-CCCceEEEECcCCCccccccccCCHH---HHHHHHHHhhcCCCEEEEEecCCC----hHH
Confidence 111111 22568999999988755322212233 33455565 78998887665544 122
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCccc---cHHHHHhCcccccCCCeEEEEeCChhhhhc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDKGT---NALEVLEGRSYRLQHPWVGIVNRSQADINK 250 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (625)
.+.+..++...+.|+++|+||+|+.+... +...+ . ..++.+++.+......++.+
T Consensus 101 ~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l-~---~~lg~~~i~~SA~~g~gi~e 158 (274)
T 3i8s_A 101 NLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDAL-S---ARLGCPVIPLVSTRGRGIEA 158 (274)
T ss_dssp HHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHH-H---HHHTSCEEECCCGGGHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHH-H---HhcCCCEEEEEcCCCCCHHH
Confidence 33344444445899999999999976432 12222 1 12344555555555555443
No 29
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.38 E-value=2.8e-13 Score=147.28 Aligned_cols=123 Identities=20% Similarity=0.268 Sum_probs=61.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
..|+++|.+|+|||||+|+|+|.++ .+++..|...+ +..
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~-----a~vs~~~gtT~-----------------------------------d~~- 272 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQER-----AIVSHMPGTTR-----------------------------------DYI- 272 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-----------------------------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCCCceE-----------------------------------EEE-
Confidence 3699999999999999999999865 33343431111 000
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DA 192 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~~ 192 (625)
...+.+ +...++||||||+.+.... .....-..+..|++.+|.++++++ ++...... ..
T Consensus 273 ---------~~~i~~---~g~~l~liDT~G~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~VvD-~s~~~s~~~~~~~ 334 (476)
T 3gee_A 273 ---------EECFIH---DKTMFRLTDTAGLREAGEE-----IEHEGIRRSRMKMAEADLILYLLD-LGTERLDDELTEI 334 (476)
T ss_dssp ---------CEEEEE---TTEEEEEEC-------------------------CCCSSCSEEEEEEE-TTTCSSGGGHHHH
T ss_pred ---------EEEEEE---CCeEEEEEECCCCCcchhH-----HHHHHHHHHHhhcccCCEEEEEEE-CCCCcchhhhHHH
Confidence 001111 2246999999998653211 111112345678899998777555 44333321 34
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
..+.+.+. +.|+|+|+||+|+.+..
T Consensus 335 ~~~l~~l~--~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 335 RELKAAHP--AAKFLTVANKLDRAANA 359 (476)
T ss_dssp HHHHHHCT--TSEEEEEEECTTSCTTT
T ss_pred HHHHHhcC--CCCEEEEEECcCCCCcc
Confidence 45666665 68999999999998654
No 30
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.37 E-value=2e-12 Score=127.07 Aligned_cols=134 Identities=17% Similarity=0.244 Sum_probs=76.8
Q ss_pred CCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHH
Q 006928 27 EGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKE 106 (625)
Q Consensus 27 ~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (625)
.+|......+.|+|+|.+|+|||||+|+|+|..+.+.....+|+.+.
T Consensus 21 ~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~--------------------------------- 67 (228)
T 2qu8_A 21 GLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLY--------------------------------- 67 (228)
T ss_dssp -CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEE---------------------------------
T ss_pred cCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeee---------------------------------
Confidence 34444446789999999999999999999998762211111121110
Q ss_pred HHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-
Q 006928 107 ISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ- 185 (625)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~- 185 (625)
+.........+.||||||........ ..... ...+..|...+|++|+++...+.
T Consensus 68 ---------------------~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~--~~~~~~~~~~~d~~i~v~d~~~~~ 122 (228)
T 2qu8_A 68 ---------------------VGHFDHKLNKYQIIDTPGLLDRAFEN--RNTIE--MTTITALAHINGVILFIIDISEQC 122 (228)
T ss_dssp ---------------------EEEEEETTEEEEEEECTTTTTSCGGG--CCHHH--HHHHHHHHTSSEEEEEEEETTCTT
T ss_pred ---------------------eeeeecCCCeEEEEECCCCcCcccch--hhhHH--HHHHHHhhccccEEEEEEeccccc
Confidence 00111122568999999986532211 10100 12234566788887775544332
Q ss_pred ccccHHHHHHHHHhCCC--CCceEEEeccCcccCc
Q 006928 186 DIATSDAIKLAREVDPT--GERTFGVLTKLDLMDK 218 (625)
Q Consensus 186 d~~~~~~l~l~~~~d~~--~~rti~VltK~D~~~~ 218 (625)
.+.......+...+... +.|+++|+||+|+.+.
T Consensus 123 s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 123 GLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp SSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred CcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 12223344455555543 7899999999999864
No 31
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.36 E-value=9e-13 Score=133.18 Aligned_cols=148 Identities=21% Similarity=0.298 Sum_probs=86.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
.+.|+++|++|+|||||+|+|+|..+.......+|..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~------------------------------------------ 40 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER------------------------------------------ 40 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE------------------------------------------
Confidence 46899999999999999999999864221111112211
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~--~~~~iIl~v~~a~~d~~~~~~ 192 (625)
....+.. ...+.||||||..+..... .. +.+...|+. ++|++|++++..+ . ...
T Consensus 41 -----------~~~~~~~--~~~l~l~DtpG~~~~~~~~----~~---e~v~~~~~~~~~~d~vi~V~D~t~--~--e~~ 96 (272)
T 3b1v_A 41 -----------KSGLVKK--NKDLEIQDLPGIYSMSPYS----PE---AKVARDYLLSQRADSILNVVDATN--L--ERN 96 (272)
T ss_dssp -----------EEEECTT--CTTEEEEECCCCSCSSCSS----HH---HHHHHHHHHTTCCSEEEEEEEGGG--H--HHH
T ss_pred -----------EEEEEec--CCeEEEEECCCcCccCCCC----hH---HHHHHHHHhcCCCCEEEEEecCCc--h--HhH
Confidence 1111222 3679999999987653221 11 445667775 6998777665443 1 223
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccc---cHHHHHhCcccccCCCeEEEEeCChhhhhccC
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDKGT---NALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (625)
+.+..++...+.|+++|+||+|+..... +...+. ..++.+++.+...+..++++..
T Consensus 97 ~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~----~~lg~~vi~~SA~~g~gi~el~ 155 (272)
T 3b1v_A 97 LYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLS----YHLGVPVVATSALKQTGVDQVV 155 (272)
T ss_dssp HHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHH----HHHTSCEEECBTTTTBSHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHH----HHcCCCEEEEEccCCCCHHHHH
Confidence 3344445446899999999999975422 222221 1233455555555555544433
No 32
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.36 E-value=5.4e-13 Score=144.50 Aligned_cols=155 Identities=23% Similarity=0.241 Sum_probs=80.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
..|+++|.+|+|||||+|+|+|.++ .+++..|. +| .+...
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~-----a~v~~~~g-----tT------------------------------~d~~~ 264 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDR-----AIVTDLPG-----TT------------------------------RDVVE 264 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHB-----SCCSCCTT-----CC------------------------------HHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCc-----ccccCCCC-----ee------------------------------EEEEE
Confidence 3699999999999999999999765 33333331 00 00000
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l 195 (625)
. .+.+ +..+++||||||+...... .....-.....+++.+|.+++++ +++..+...+ ..+
T Consensus 265 ~----------~i~~---~g~~v~liDT~G~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~Vv-D~s~~~~~~~-~~i 324 (462)
T 3geh_A 265 S----------QLVV---GGIPVQVLDTAGIRETSDQ-----VEKIGVERSRQAANTADLVLLTI-DAATGWTTGD-QEI 324 (462)
T ss_dssp H----------EEEE---TTEEEEECC-------------------------CCCCSCSEEEEEE-ETTTCSCHHH-HHH
T ss_pred E----------EEEE---CCEEEEEEECCccccchhH-----HHHHHHHHHhhhhhcCCEEEEEe-ccCCCCCHHH-HHH
Confidence 0 0111 2256899999998643211 11111233456788999877755 4544444333 335
Q ss_pred HHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHH
Q 006928 196 AREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (625)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (625)
.+.+.. .|+++|+||+|+.+.... . .........+++.+...+..+++++...+.
T Consensus 325 ~~~l~~--~piivV~NK~Dl~~~~~~--~--~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~ 379 (462)
T 3geh_A 325 YEQVKH--RPLILVMNKIDLVEKQLI--T--SLEYPENITQIVHTAAAQKQGIDSLETAIL 379 (462)
T ss_dssp HHHHTT--SCEEEEEECTTSSCGGGS--T--TCCCCTTCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred HHhccC--CcEEEEEECCCCCcchhh--H--HHHHhccCCcEEEEECCCCCCHHHHHHHHH
Confidence 555543 699999999999865321 1 111122234566666666666655544443
No 33
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.36 E-value=3.2e-12 Score=121.81 Aligned_cols=159 Identities=14% Similarity=0.196 Sum_probs=90.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|.+|+|||||+|+|++..+.+......|.....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--------------------------------------- 55 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKI--------------------------------------- 55 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEE---------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEE---------------------------------------
Confidence 45689999999999999999999987522221111111100
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-c-ccHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~-~~~~ 191 (625)
..+.+ ......+.|+||||.... ..+...|++.+|++|+++...+.. + ....
T Consensus 56 ------------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 109 (196)
T 3tkl_A 56 ------------RTIEL-DGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 109 (196)
T ss_dssp ------------EEEEE-TTEEEEEEEEEECCSGGG-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCcHhh-------------hhhHHHHHhhCCEEEEEEECcCHHHHHHHHH
Confidence 00001 011136899999994332 334678899999888766544321 1 1123
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHH
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (625)
++..+....+.+.|+++|+||+|+.+................+..|+.+...+..++.+....+..
T Consensus 110 ~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 175 (196)
T 3tkl_A 110 WLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAA 175 (196)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 344455555667899999999999765431111111011223445666665555555554444433
No 34
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.36 E-value=2.4e-12 Score=140.01 Aligned_cols=129 Identities=17% Similarity=0.297 Sum_probs=79.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.|+++|.+|+|||||+|+|+|.+.. .++..|....
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~-----~~~~~~gtt~------------------------------------- 231 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERV-----IVSNVAGTTR------------------------------------- 231 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTE-----EECC-------------------------------------------
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCcc-----ccCCCCCeEE-------------------------------------
Confidence 5679999999999999999999998642 2223331110
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHH-HHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIEN-MVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~-~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
......+++ +...++||||||+.+........ +.... ....|++.+|++|++ .+++..+..++.
T Consensus 232 --------~~~~~~~~~---~~~~~~l~DT~G~~~~~~~~~~~---e~~~~~~~~~~~~~ad~~llv-iD~~~~~~~~~~ 296 (456)
T 4dcu_A 232 --------DAVDTSFTY---NQQEFVIVDTAGMRKKGKVYETT---EKYSVLRALKAIDRSEVVAVV-LDGEEGIIEQDK 296 (456)
T ss_dssp --------CTTSEEEEE---TTEEEEETTGGGTTTBTTBCCCC---SHHHHHHHHHHHHHCSEEEEE-EETTTCCCHHHH
T ss_pred --------EEEEEEEEE---CCceEEEEECCCCCcCcccchHH---HHHHHHHHHHHHhhCCEEEEE-EeCCCCcCHHHH
Confidence 000011111 12368999999987654322111 11222 234688999987765 556655555543
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCccc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDKGT 220 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~~ 220 (625)
.++..+...+.++++|+||+|+.+...
T Consensus 297 -~~~~~~~~~~~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 297 -RIAGYAHEAGKAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp -HHHHHHHHTTCEEEEEEECGGGSCCCS
T ss_pred -HHHHHHHHcCCCEEEEEEChhcCCCch
Confidence 355555556899999999999987543
No 35
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.35 E-value=2.3e-12 Score=122.32 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=45.2
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HHHHHHHhCC-CCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIKLAREVDP-TGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~l~l~~~~d~-~~~rti~Vlt 211 (625)
..+.|+||||... ...+...|++++|++|+++.. +....... ++..+..... .+.|+++|+|
T Consensus 70 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 135 (195)
T 3bc1_A 70 IHLQLWDTAGLER-------------FRSLTTAFFRDAMGFLLLFDL-TNEQSFLNVRNWISQLQMHAYSENPDIVLCGN 135 (195)
T ss_dssp EEEEEEEECCSGG-------------GHHHHHHTTTTCSEEEEEEET-TCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEE
T ss_pred EEEEEEeCCCcHH-------------HHHHHHHHHcCCCEEEEEEEC-CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 4689999999632 256678899999988776554 33222222 2222222222 5789999999
Q ss_pred cCcccCc
Q 006928 212 KLDLMDK 218 (625)
Q Consensus 212 K~D~~~~ 218 (625)
|+|+.+.
T Consensus 136 K~Dl~~~ 142 (195)
T 3bc1_A 136 KSDLEDQ 142 (195)
T ss_dssp CTTCGGG
T ss_pred Ccccccc
Confidence 9999764
No 36
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.34 E-value=1.2e-12 Score=121.27 Aligned_cols=117 Identities=14% Similarity=0.083 Sum_probs=57.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
..+|+|+|++|+|||||+|+|+|..+-+....+.+.+..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR----------------------------------------- 40 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE-----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE-----------------------------------------
Confidence 458999999999999999999987652221111111100
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
.+ ........+.++||||... ...+...|++.+|+++++++..+. ........
T Consensus 41 ------------~~-~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~ 93 (166)
T 3q72_A 41 ------------SI-VVDGEEASLMVYDIWEQDG-------------GRWLPGHCMAMGDAYVIVYSVTDK-GSFEKASE 93 (166)
T ss_dssp ------------EE-EETTEEEEEEEEECC----------------------------CCEEEEEEETTCH-HHHHHHHH
T ss_pred ------------EE-EECCEEEEEEEEECCCCcc-------------chhhhhhhhhhCCEEEEEEECCCH-HHHHHHHH
Confidence 00 0111224678999999442 245567788999988876654432 11122222
Q ss_pred HHHH----hCCCCCceEEEeccCcccCcc
Q 006928 195 LARE----VDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 195 l~~~----~d~~~~rti~VltK~D~~~~~ 219 (625)
+... ....+.|+++|+||+|+.+..
T Consensus 94 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 122 (166)
T 3q72_A 94 LRVQLRRARQTDDVPIILVGNKSDLVRSR 122 (166)
T ss_dssp HHHHHHHCC---CCCEEEEEECTTCCSSC
T ss_pred HHHHHHHhcCCCCCCEEEEEecccccccc
Confidence 2222 223578999999999998653
No 37
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.34 E-value=5e-12 Score=132.94 Aligned_cols=127 Identities=24% Similarity=0.365 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..|.|+++|.+|||||||+|+|+|..+...+...+|+-|+.-.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~------------------------------------- 220 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYA------------------------------------- 220 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEE-------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEE-------------------------------------
Confidence 5788999999999999999999998752222223333331111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc--ccc--
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD--IAT-- 189 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d--~~~-- 189 (625)
+.+ ++ ..+.++||||+... .|.+..+.+... ..++..+|.+++++...+.+ ...
T Consensus 221 --------------i~~--~g-~~v~l~DT~G~i~~----lp~~lve~f~~t-l~~~~~aD~il~VvD~s~~~~~~~~~~ 278 (364)
T 2qtf_A 221 --------------IPI--NN-RKIMLVDTVGFIRG----IPPQIVDAFFVT-LSEAKYSDALILVIDSTFSENLLIETL 278 (364)
T ss_dssp --------------EEE--TT-EEEEEEECCCBCSS----CCGGGHHHHHHH-HHGGGGSSEEEEEEETTSCHHHHHHHH
T ss_pred --------------EEE--CC-EEEEEEeCCCchhc----CCHHHHHHHHHH-HHHHHhCCEEEEEEECCCCcchHHHHH
Confidence 112 22 45789999998652 234455655554 45788999877755443322 111
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
..+..+++.+...+.++|+|.||+|+.+.+
T Consensus 279 ~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 279 QSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp HHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred HHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 123445666666678999999999998654
No 38
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=1.5e-12 Score=122.22 Aligned_cols=120 Identities=16% Similarity=0.165 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|.+|+|||||+|+|++..+.+......+.......
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~------------------------------------- 51 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNK------------------------------------- 51 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEE-------------------------------------
Confidence 4568999999999999999999998763322211111110000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~---~ 190 (625)
.+.+ ......+.|+||||... ...+...|++++|++|+++...+ .... .
T Consensus 52 -------------~~~~-~~~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~-~~s~~~~~ 103 (180)
T 2g6b_A 52 -------------VLDV-DGVKVKLQMWDTAGQER-------------FRSVTHAYYRDAHALLLLYDVTN-KASFDNIQ 103 (180)
T ss_dssp -------------EEEE-TTEEEEEEEEECCCC---------------------CCGGGCSEEEEEEETTC-HHHHHTHH
T ss_pred -------------EEEE-CCEEEEEEEEeCCCcHH-------------HHHHHHHHccCCCEEEEEEECCC-HHHHHHHH
Confidence 0001 01123689999999432 24566788999998887665433 2211 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++..+....+.+.|+++|+||+|+.+.
T Consensus 104 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 104 AWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 3344445555567899999999999864
No 39
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.34 E-value=2.4e-12 Score=119.43 Aligned_cols=116 Identities=18% Similarity=0.190 Sum_probs=70.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
..+|+|+|.+|+|||||+|+|+|..+.+......+.-..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 41 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK----------------------------------------- 41 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEE-----------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEE-----------------------------------------
Confidence 358999999999999999999998763221111111000
Q ss_pred hCCCCccccccEEEEEecC-CCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006928 115 TGKSKQISNIPIQLSIYSP-NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~-~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~---~ 190 (625)
...+..+ ....+.|+||||.... ..+...|++++|++|+++...+ .... .
T Consensus 42 ------------~~~~~~~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 95 (170)
T 1g16_A 42 ------------IKTVDINGKKVKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITD-ERTFTNIK 95 (170)
T ss_dssp ------------EEEEESSSCEEEEEEECCTTGGGT-------------SCCCHHHHTTEEEEEEEEETTC-HHHHHTHH
T ss_pred ------------EEEEEECCEEEEEEEEeCCCChhh-------------hhhHHHHhccCCEEEEEEECCC-HHHHHHHH
Confidence 0001111 1236899999995432 2235678899998777655433 2211 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccC
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~ 217 (625)
.++..+......+.|+++|+||+|+.+
T Consensus 96 ~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 96 QWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 333344444555789999999999943
No 40
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.34 E-value=3.5e-12 Score=124.03 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=47.5
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCC----CCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDP----TGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~----~~~rti~Vlt 211 (625)
..+.||||||. +....+...|++.+|++|+++. ++..........+...+.. .+.++++|+|
T Consensus 84 ~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~iilV~D-~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 84 VHLQLWDTAGQ-------------ERFRSLTTAFFRDAMGFLLMFD-LTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp EEEEEEEEESH-------------HHHHHHHHHHHTTCCEEEEEEE-TTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred EEEEEEECCCc-------------HhHHhHHHHHhcCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 45899999992 3346778899999998777654 4433222333345555543 4688999999
Q ss_pred cCcccCc
Q 006928 212 KLDLMDK 218 (625)
Q Consensus 212 K~D~~~~ 218 (625)
|+|+.+.
T Consensus 150 K~Dl~~~ 156 (217)
T 2f7s_A 150 KADLPDQ 156 (217)
T ss_dssp CTTCGGG
T ss_pred CCccccc
Confidence 9999764
No 41
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.33 E-value=2.7e-12 Score=118.62 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=71.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
..+|+|+|.+|+|||||+|+|++..+ +.....++.......
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~-------------------------------------- 44 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK-------------------------------------- 44 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEE--------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEE--------------------------------------
Confidence 45899999999999999999998875 322222221111000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--- 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~--- 191 (625)
+.+ ......+.|+||||... ...+...|++.+|++|+++...+. .....
T Consensus 45 -------------~~~-~~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~ 96 (168)
T 1u8z_A 45 -------------VVL-DGEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEM-ESFAATAD 96 (168)
T ss_dssp -------------EEE-TTEEEEEEEEECCC----------------CHHHHHHHHHHCSEEEEEEETTCH-HHHHHHHH
T ss_pred -------------EEE-CCEEEEEEEEECCCcch-------------hHHHHHHHhhcCCEEEEEEECCCH-HHHHHHHH
Confidence 001 11123688999999432 255677889999988776654432 11111
Q ss_pred HH-HHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AI-KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l-~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++ .+.......+.|+++|+||+|+.+.
T Consensus 97 ~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 97 FREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 21 2333344457899999999999764
No 42
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.33 E-value=4.8e-12 Score=118.55 Aligned_cols=116 Identities=17% Similarity=0.330 Sum_probs=75.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.|+|+|.+|+|||||+++|++..+.+.....+|...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~----------------------------------------- 45 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI----------------------------------------- 45 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTC-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEee-----------------------------------------
Confidence 678999999999999999999999876332211111111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
.. ..+.+ +...+.|+||||...... +...|+..+|++|+++. ++... ....+
T Consensus 46 --------~~--~~~~~---~~~~~~l~Dt~G~~~~~~-------------~~~~~~~~~d~~i~v~d-~~~~~-~~~~~ 97 (178)
T 2lkc_A 46 --------GA--YQVTV---NDKKITFLDTPGHEAFTT-------------MRARGAQVTDIVILVVA-ADDGV-MPQTV 97 (178)
T ss_dssp --------CC--CEEEE---TTEEEEESCCCSSSSSSC-------------SCCSSCCCCCEEEEEEE-TTCCC-CHHHH
T ss_pred --------eE--EEEEe---CCceEEEEECCCCHHHHH-------------HHHHHHhhCCEEEEEEE-CCCCC-cHHHH
Confidence 00 01111 124578999999654322 23467788998877664 44322 34444
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
..+..+...+.|+++|+||+|+.+.
T Consensus 98 ~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 98 EAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp HHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred HHHHHHHhCCCCEEEEEECccCCcC
Confidence 5566666667899999999999864
No 43
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.33 E-value=1.2e-12 Score=121.54 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=68.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
..+|+|+|++|+|||||+|+|++..+.+......+.-....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~--------------------------------------- 46 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK--------------------------------------- 46 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEE---------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEE---------------------------------------
Confidence 45899999999999999999998875221111111100000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--- 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~--- 191 (625)
.+.+ ......+.|+||||... ...+...|++++|++|+++...+ ......
T Consensus 47 ------------~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~ 99 (170)
T 1z08_A 47 ------------KLNI-GGKRVNLAIWDTAGQER-------------FHALGPIYYRDSNGAILVYDITD-EDSFQKVKN 99 (170)
T ss_dssp ------------EEES-SSCEEEEEEEECCCC--------------------CCSSTTCSEEEEEEETTC-HHHHHHHHH
T ss_pred ------------EEEE-CCEEEEEEEEECCCcHh-------------hhhhHHHHhccCCEEEEEEECcC-HHHHHHHHH
Confidence 0001 01123688999999432 13445678899998887665433 221122
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++..++...+.+.|+++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 100 WVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp HHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCeEEEEEECcccccc
Confidence 222333333456899999999999764
No 44
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.33 E-value=3.1e-12 Score=120.85 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|++|+|||||+|+|++..+.+......+... .
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~------------------------------------- 48 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEF---G------------------------------------- 48 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEE---E-------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE---E-------------------------------------
Confidence 457899999999999999999999875322111111000 0
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--- 190 (625)
...+.+ ......+.|+||||... ...+...|++++|++|+++...+ .....
T Consensus 49 -----------~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 102 (186)
T 2bme_A 49 -----------SKIINV-GGKYVKLQIWDTAGQER-------------FRSVTRSYYRGAAGALLVYDITS-RETYNALT 102 (186)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEECCSGG-------------GHHHHHTTSTTCSEEEEEEETTC-HHHHHTHH
T ss_pred -----------EEEEEE-CCEEEEEEEEeCCCcHH-------------HHHHHHHHHhcCCEEEEEEECcC-HHHHHHHH
Confidence 000001 01113689999999432 25567889999998877665443 22211
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++..+......+.|+++|+||+|+.+.
T Consensus 103 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 103 NWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 2333344455567899999999999754
No 45
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.33 E-value=4.8e-12 Score=120.57 Aligned_cols=119 Identities=14% Similarity=0.183 Sum_probs=72.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|.+|+|||||+|+|++..+.+...... ... ..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~--~~------------------------------------- 63 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI-GVE--FS------------------------------------- 63 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCS-SEE--EE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-cee--EE-------------------------------------
Confidence 45689999999999999999999987632211100 000 00
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--- 190 (625)
...+.+ ......+.|+||||.... ..+...|++++|++|+++. ++......
T Consensus 64 -----------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~D-~~~~~s~~~~~ 117 (193)
T 2oil_A 64 -----------TRTVML-GTAAVKAQIWDTAGLERY-------------RAITSAYYRGAVGALLVFD-LTKHQTYAVVE 117 (193)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEEEEEE-TTCHHHHHTHH
T ss_pred -----------EEEEEE-CCEEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEE-CCCHHHHHHHH
Confidence 000001 112246899999997542 2346678899998777654 43322211
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++..+......+.++++|+||+|+.+.
T Consensus 118 ~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 118 RWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp HHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 2233333334457899999999999764
No 46
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.33 E-value=1.5e-12 Score=122.15 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=69.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..++|+|+|.+|+|||||+|+|+|..+.+......|... .
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~---~------------------------------------- 47 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF---K------------------------------------- 47 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEE---E-------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEE---E-------------------------------------
Confidence 578999999999999999999999875221111111111 0
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
...+.+ ......+.|+||||.... ..+...|++.+|++|+++.. +.........
T Consensus 48 -----------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~ 101 (181)
T 3tw8_B 48 -----------IRTVEI-NGEKVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYDV-TSAESFVNVK 101 (181)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEETTGGGC-------------SSCCGGGGTTCSEEEEEEET-TCHHHHHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEcCCCchhh-------------hhhHHHHhccCCEEEEEEEC-CCHHHHHHHH
Confidence 000001 011145899999994432 22345688999987776544 3322222222
Q ss_pred HHHHHhC--CCCCceEEEeccCcccCc
Q 006928 194 KLAREVD--PTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d--~~~~rti~VltK~D~~~~ 218 (625)
.+...+. ..+.|+++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 102 RWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp HHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred HHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 2222221 235889999999998754
No 47
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.33 E-value=4.9e-12 Score=119.23 Aligned_cols=118 Identities=18% Similarity=0.185 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|.+|+|||||+|+|++..+ +.....++.......
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 58 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK------------------------------------- 58 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEE-------------------------------------
Confidence 456899999999999999999998875 322222222111000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~-- 191 (625)
+.+ ......+.|+||||.... ..+...|++.+|++|+++...+. .....
T Consensus 59 --------------~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~ 109 (187)
T 2a9k_A 59 --------------VVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEM-ESFAATA 109 (187)
T ss_dssp --------------EEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCH-HHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEECCCCccc-------------HHHHHHHhccCCEEEEEEECcCH-HHHHHHH
Confidence 001 111136899999995431 45677888999988776654432 11111
Q ss_pred -HH-HHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 -AI-KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 -~l-~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++ .+.+.....+.|+++|+||+|+.+.
T Consensus 110 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 110 DFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 22 2333344457899999999999764
No 48
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.33 E-value=4.3e-12 Score=137.22 Aligned_cols=153 Identities=16% Similarity=0.267 Sum_probs=87.9
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCC
Q 006928 5 TSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGT 84 (625)
Q Consensus 5 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~ 84 (625)
+++-.+++.+.+.+....... .....+.|++||++|+|||||+|+|+|.++. .++..|....
T Consensus 150 ~gv~~L~~~i~~~l~~~~~~~-----~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~-----~~~~~~gtT~-------- 211 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNIPETK-----YNEEVIQFCLIGRPNVGKSSLVNAMLGEERV-----IVSNVAGTTR-------- 211 (436)
T ss_dssp BTHHHHHHHHHHTGGGCCSSC-----CCTTCEEEEEECSTTSSHHHHHHHHHTSTTE-----EEC---------------
T ss_pred CChHHHHHHHHHhcCcccccc-----ccccCcEEEEEcCCCCCHHHHHHHHhCCCce-----eecCCCCcee--------
Confidence 455566666655443221100 0125679999999999999999999998752 1222221000
Q ss_pred cceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHH
Q 006928 85 DYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIEN 164 (625)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~ 164 (625)
+.+...+.. +...+.||||||+.+.....+ .++ ....
T Consensus 212 ---------------------------------------d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~--~~e-~~~~ 248 (436)
T 2hjg_A 212 ---------------------------------------DAVDTSFTY-NQQEFVIVDTAGMRKKGKVYE--TTE-KYSV 248 (436)
T ss_dssp -----------------------------------------CCEEEEE-TTEEEEETTHHHHTCBTTBCC--CCS-HHHH
T ss_pred ---------------------------------------eeeEEEEEE-CCeEEEEEECCCcCcCccccc--hHH-HHHH
Confidence 000000111 123589999999865433211 111 1122
Q ss_pred H-HHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCccc
Q 006928 165 M-VRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGT 220 (625)
Q Consensus 165 ~-v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 220 (625)
+ ...|++.+|++++++ +++.....++. .++..+...+.++++|+||+|+.+...
T Consensus 249 ~~~~~~~~~ad~~llv~-D~~~~~s~~~~-~~~~~~~~~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 249 LRALKAIDRSEVVAVVL-DGEEGIIEQDK-RIAGYAHEAGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHHHHHHHHCSEEEEEE-ETTTCCCHHHH-HHHHHHHHTTCEEEEEEECGGGSCCCT
T ss_pred HHHHHHHHhCCEEEEEE-cCCcCCcHHHH-HHHHHHHHcCCcEEEEEECccCCCcch
Confidence 2 346888999877654 55555555543 455655556899999999999987543
No 49
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.32 E-value=5.2e-12 Score=120.72 Aligned_cols=65 Identities=15% Similarity=0.271 Sum_probs=41.1
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCC-CCCceEEEeccCc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDP-TGERTFGVLTKLD 214 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~-~~~rti~VltK~D 214 (625)
..++||||||.... ..+...|++.+|++|+++. ++..........+...+.. .+.|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D-~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERY-------------ASIVPLYYRGATCAIVVFD-ISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGC-------------TTTHHHHHTTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEE-CCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 46899999994332 2346788999998777554 4433222222223322221 2489999999999
No 50
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.32 E-value=2.4e-12 Score=120.08 Aligned_cols=120 Identities=18% Similarity=0.093 Sum_probs=64.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.|+|+|++|+|||||+|+|+|..+.+....+.+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~-------------------------------------------- 38 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGE-------------------------------------------- 38 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSS--------------------------------------------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCcccc--------------------------------------------
Confidence 356899999999999999999999875221111000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~-- 191 (625)
+.....+.+. .....+.++||||..... ...+...|++.+|++|++++..+. .....
T Consensus 39 --------~~~~~~~~~~-~~~~~~~~~D~~g~~~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~ 97 (175)
T 2nzj_A 39 --------DVYERTLTVD-GEDTTLVVVDTWEAEKLD-----------KSWSQESCLQGGSAYVIVYSIADR-GSFESAS 97 (175)
T ss_dssp --------SEEEEEEEET-TEEEEEEEECCC------------------CHHHHHTTTSCSEEEEEEETTCH-HHHHHHH
T ss_pred --------ceeEEEEEEC-CEEEEEEEEecCCCCccc-----------hhhhHHhhcccCCEEEEEEECCCH-HHHHHHH
Confidence 0000001111 112358899999964310 134456788999988776654332 11112
Q ss_pred -HHHHHHHh-CCCCCceEEEeccCcccCc
Q 006928 192 -AIKLAREV-DPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 -~l~l~~~~-d~~~~rti~VltK~D~~~~ 218 (625)
++..+... ...+.|+++|+||+|+.+.
T Consensus 98 ~~~~~l~~~~~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 98 ELRIQLRRTHQADHVPIILVGNKADLARC 126 (175)
T ss_dssp HHHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred HHHHHHHHhhccCCCCEEEEEEChhhccc
Confidence 22222222 2347899999999999764
No 51
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.32 E-value=2.9e-12 Score=123.11 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|.+|+|||||+|+|++..+.+.... |. .+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~-~~~~~------------------------------------- 46 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVS--TV-GIDFK------------------------------------- 46 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCC--CC-SEEEE-------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--cc-ceeEE-------------------------------------
Confidence 356899999999999999999999876321111 10 00000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--- 190 (625)
...+.+ ......+.|+||||... ...+...|++++|++|+++...+ .....
T Consensus 47 -----------~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~-~~s~~~~~ 100 (203)
T 1zbd_A 47 -----------VKTIYR-NDKRIKLQIWDTAGLER-------------YRTITTAYYRGAMGFILMYDITN-EESFNAVQ 100 (203)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEECCSGG-------------GHHHHHTTGGGCSEEEEEEETTC-HHHHHHHH
T ss_pred -----------EEEEEE-CCeEEEEEEEECCCchh-------------hcchHHHhhcCCCEEEEEEECcC-HHHHHHHH
Confidence 000001 11124689999999642 15567889999998877665433 22212
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++..+......+.|+++|+||+|+.+.
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 101 DWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp HHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 2233334444457899999999999764
No 52
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.32 E-value=3.2e-12 Score=121.96 Aligned_cols=119 Identities=17% Similarity=0.213 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|.+|+|||||+|+|++..+.+......+.
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~------------------------------------------- 61 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV------------------------------------------- 61 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTE-------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccce-------------------------------------------
Confidence 4458999999999999999999998752211111100
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~---~ 190 (625)
+.....+.+ ......+.|+||||... ...+...|++++|++|+++...+ .... .
T Consensus 62 --------~~~~~~~~~-~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~D~~~-~~s~~~~~ 118 (192)
T 2il1_A 62 --------DFKIKTVEL-RGKKIRLQIWDTAGQER-------------FNSITSAYYRSAKGIILVYDITK-KETFDDLP 118 (192)
T ss_dssp --------EEEEEEEEE-TTEEEEEEEEEECCSGG-------------GHHHHHHHHHHCSEEEEEEETTC-HHHHHTHH
T ss_pred --------eEEEEEEEE-CCeEEEEEEEeCCCcHH-------------HHHHHHHHhcCCCEEEEEEECcC-HHHHHHHH
Confidence 000001111 11124689999999432 25567788899998877655433 2221 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++..++...+.+.++++|+||+|+.+.
T Consensus 119 ~~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 119 KWMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 2344556666668999999999999754
No 53
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.32 E-value=3.6e-12 Score=119.31 Aligned_cols=119 Identities=15% Similarity=0.202 Sum_probs=74.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|.+|+|||||+|+|++..+ +......+.......
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 55 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTR------------------------------------- 55 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCTTSCCCCEEEE-------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceEEEEE-------------------------------------
Confidence 467899999999999999999999875 221111111110000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--- 190 (625)
.+.+ ......+.|+||||... ...+...|++++|++|+++.. +......
T Consensus 56 -------------~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~ 107 (179)
T 1z0f_A 56 -------------IIEV-SGQKIKLQIWDTAGQER-------------FRAVTRSYYRGAAGALMVYDI-TRRSTYNHLS 107 (179)
T ss_dssp -------------EEEE-TTEEEEEEEEECTTGGG-------------TCHHHHHHHHTCSEEEEEEET-TCHHHHHTHH
T ss_pred -------------EEEE-CCeEEEEEEEECCCChH-------------hhhhHHHHhccCCEEEEEEeC-cCHHHHHHHH
Confidence 0111 11124689999999432 145677899999988776554 3322211
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++..+......+.|+++|+||+|+.+.
T Consensus 108 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 108 SWLTDARNLTNPNTVIILIGNKADLEAQ 135 (179)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 2333345555567899999999999754
No 54
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.31 E-value=5.8e-12 Score=121.05 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.|+|+|.+|+|||||+|+|++..+ +.....++.......
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 54 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK------------------------------------- 54 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEE-------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEE-------------------------------------
Confidence 567999999999999999999998875 322222221111000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--- 190 (625)
+.+ ......+.|+||||.... ..+...|++.+|++|+++...+. ....
T Consensus 55 --------------~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~ 105 (206)
T 2bov_A 55 --------------VVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEM-ESFAATA 105 (206)
T ss_dssp --------------EEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCH-HHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEcCCChhhh-------------HHHHHHHHhhCCEEEEEEECCCH-HHHHHHH
Confidence 001 111236889999995431 45677888999988776544332 1111
Q ss_pred HHHH-HHHHhCCCCCceEEEeccCcccCc
Q 006928 191 DAIK-LAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~-l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++. +.+.....+.|+++|+||+|+.+.
T Consensus 106 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 106 DFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 2222 233334457899999999999764
No 55
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.31 E-value=3e-12 Score=118.77 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=72.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
..+|+|+|.+|+|||||+|+|+|..+.+.... |... ...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~-~~~-------------------------------------- 44 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINP--TIGA-SFM-------------------------------------- 44 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCC--CCSE-EEE--------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCC--ceeE-EEE--------------------------------------
Confidence 45899999999999999999999875321111 0000 000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---H
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---D 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~ 191 (625)
...+.+ ......+.|+||||.... ..+...|++.+|++|+++.. +...... .
T Consensus 45 ----------~~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~-~~~~s~~~~~~ 99 (170)
T 1z0j_A 45 ----------TKTVQY-QNELHKFLIWDTAGLERF-------------RALAPMYYRGSAAAIIVYDI-TKEETFSTLKN 99 (170)
T ss_dssp ----------EEEEEE-TTEEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEET-TCHHHHHHHHH
T ss_pred ----------EEEEEE-CCeEEEEEEEcCCCchhh-------------hcccHhhCcCCCEEEEEEEC-cCHHHHHHHHH
Confidence 000001 111246899999996432 34566788999988776544 3322222 2
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++..+........++++|+||+|+.+.
T Consensus 100 ~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 100 WVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp HHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred HHHHHHHhCCCCCcEEEEEECCccccc
Confidence 333444444557889999999999864
No 56
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.31 E-value=4.7e-12 Score=118.73 Aligned_cols=118 Identities=18% Similarity=0.197 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.|+|+|.+|+|||||+|+|++..+ +.....++.......
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 49 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKI------------------------------------- 49 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEE-------------------------------------
Confidence 457999999999999999999999865 222222222111100
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~-- 191 (625)
+.+ ......+.|+||||.... ..+...|++.+|++|+++...+ ......
T Consensus 50 --------------~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 100 (181)
T 2fn4_A 50 --------------CSV-DGIPARLDILDTAGQEEF-------------GAMREQYMRAGHGFLLVFAIND-RQSFNEVG 100 (181)
T ss_dssp --------------EEE-TTEEEEEEEEECCCTTTT-------------SCCHHHHHHHCSEEEEEEETTC-HHHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEECCCchhh-------------HHHHHHHHhhCCEEEEEEeCCC-HHHHHHHH
Confidence 000 001135889999995432 2234567888998877664433 211111
Q ss_pred -HH-HHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 -AI-KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 -~l-~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++ .+.+.....+.|+++|+||+|+.+.
T Consensus 101 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 101 KLFTQILRVKDRDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 12 2334455668899999999999764
No 57
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=2.7e-12 Score=122.30 Aligned_cols=120 Identities=19% Similarity=0.199 Sum_probs=75.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|.+|+|||||+|+|++..+.+......+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 57 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG-------------------------------------------- 57 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEET--------------------------------------------
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCee--------------------------------------------
Confidence 456899999999999999999999775221110000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cc-cHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IA-TSD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~-~~~ 191 (625)
.......+.+ ......+.|+||||. +....+...|++.+|++|+++...+.. +. ...
T Consensus 58 -------~~~~~~~~~~-~~~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 116 (191)
T 3dz8_A 58 -------IDFKVKTVYR-HEKRVKLQIWDTAGQ-------------ERYRTITTAYYRGAMGFILMYDITNEESFNAVQD 116 (191)
T ss_dssp -------TTEEEEEEEE-TTTTEEEEEECHHHH-------------HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred -------eEEEEEEEEE-CCEEEEEEEEeCCCh-------------HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHH
Confidence 0000011111 112346899999992 334677888999999887766543321 11 123
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++..+......+.|+++|+||+|+.+.
T Consensus 117 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 117 WATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 344455555568899999999998654
No 58
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.31 E-value=2.9e-12 Score=118.47 Aligned_cols=117 Identities=21% Similarity=0.209 Sum_probs=70.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
.+|+|+|.+|+|||||+|+|++..+ +......+..... .
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~-~--------------------------------------- 42 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYR-K--------------------------------------- 42 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEE-E---------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEE-E---------------------------------------
Confidence 4799999999999999999998765 2221111111100 0
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SDAI 193 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~-~~~l 193 (625)
.+.+ ......+.|+||||.... ..+...|++++|++|++++..+.. +.. ..++
T Consensus 43 -----------~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 97 (167)
T 1c1y_A 43 -----------QVEV-DCQQCMLEILDTAGTEQF-------------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLR 97 (167)
T ss_dssp -----------EEES-SSCEEEEEEEEECSSCSS-------------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHH
T ss_pred -----------EEEE-CCEEEEEEEEECCChHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 0000 111245899999995432 234567888899887766543321 111 1222
Q ss_pred H-HHHHhCCCCCceEEEeccCcccCc
Q 006928 194 K-LAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~-l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
. +.+.....+.|+++|+||+|+.+.
T Consensus 98 ~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 98 EQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp HHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHhhCcCCCcEEEEEECcccccc
Confidence 2 333334567899999999999764
No 59
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=1.7e-12 Score=123.84 Aligned_cols=119 Identities=16% Similarity=0.151 Sum_probs=72.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|.+|+|||||+|+|++..+.+ ... .|... ...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~-~~~~~-~~~------------------------------------- 61 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDH-NIS-PTIGA-SFM------------------------------------- 61 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCT-TCC-CCSSE-EEE-------------------------------------
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCC-CcC-CCcce-eEE-------------------------------------
Confidence 45689999999999999999999987521 111 00000 000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--- 190 (625)
...+.+ ......+.|+||||.... ..+...|++.+|++|+++...+ .....
T Consensus 62 -----------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilV~d~~~-~~s~~~~~ 115 (192)
T 2fg5_A 62 -----------TKTVPC-GNELHKFLIWDTAGQERF-------------HSLAPMYYRGSAAAVIVYDITK-QDSFYTLK 115 (192)
T ss_dssp -----------EEEEEC-SSSEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEETTC-THHHHHHH
T ss_pred -----------EEEEEe-CCEEEEEEEEcCCCchhh-------------HhhhHHhhccCCEEEEEEeCCC-HHHHHHHH
Confidence 000001 112246899999994331 3445678899998877665433 22222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++..+....+.+.|+++|+||+|+.+.
T Consensus 116 ~~~~~i~~~~~~~~piiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 116 KWVKELKEHGPENIVMAIAGNKCDLSDI 143 (192)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 2333344455567899999999999753
No 60
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.31 E-value=6.4e-12 Score=121.48 Aligned_cols=157 Identities=17% Similarity=0.215 Sum_probs=88.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.|+|+|++|+|||||+|+|++..+.+.....++.-...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--------------------------------------- 59 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI--------------------------------------- 59 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEE---------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE---------------------------------------
Confidence 46799999999999999999999987632221111111100
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~-~~ 191 (625)
..+.+. .....+.||||||.... ..+...|++.+|++|+++...+.. +.. ..
T Consensus 60 ------------~~~~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 113 (213)
T 3cph_A 60 ------------KTVDIN-GKKVKLQLWDTAGQERF-------------RTITTAYYRGAMGIILVYDVTDERTFTNIKQ 113 (213)
T ss_dssp ------------EEEEET-TEEEEEEEECCTTGGGG-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred ------------EEEEEC-CEEEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 001110 01146899999995432 233567889999888766543321 111 23
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCcccc---HHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHHH
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTN---ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (625)
++..+....+.+.|+++|+||+|+...... ...+.. ..+..|+.+...+..++.+....+....
T Consensus 114 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 114 WFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp HHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHH----HHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 344444455557899999999999433221 112211 1233555555555555555544444433
No 61
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.31 E-value=7e-12 Score=118.74 Aligned_cols=124 Identities=19% Similarity=0.337 Sum_probs=73.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+++|+|+|++|+|||||+|+|+|..+ +.+.. .+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~----------------------------------------- 38 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKI----------------------------------------- 38 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSC-----------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCcccee-----------------------------------------
Confidence 46899999999999999999999875 32211 112221
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcC-CCE--EEEEEecCCCcccc-
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK-PSC--IILAISPANQDIAT- 189 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~-~~~--iIl~v~~a~~d~~~- 189 (625)
..+.+ ..+.++||||+..... .+....+.+..+...|+.. ++. +++.|+++......
T Consensus 39 ------------~~~~~-----~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~ 99 (190)
T 2cxx_A 39 ------------IEIEW-----KNHKIIDMPGFGFMMG--LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII 99 (190)
T ss_dssp ------------EEEEE-----TTEEEEECCCBSCCTT--SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHH
T ss_pred ------------EEEec-----CCEEEEECCCcccccc--CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHH
Confidence 11111 1689999999765322 2233356667777777765 442 22334444321000
Q ss_pred HHH---------HHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 190 SDA---------IKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 190 ~~~---------l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
..+ ..+.+.+...+.|+++|+||+|+.+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 100 KRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred HhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 111 123333444578999999999998653
No 62
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.30 E-value=3.9e-12 Score=119.01 Aligned_cols=119 Identities=17% Similarity=0.225 Sum_probs=70.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..++|+|+|.+|+|||||+|+|++..+.+......+.-.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 44 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEF----------------------------------------- 44 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEE-----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeE-----------------------------------------
Confidence 456899999999999999999998875221110000000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--- 190 (625)
....+.+ ......+.|+||||... ...+...|++.+|++|+++...+ .....
T Consensus 45 ----------~~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~ 99 (177)
T 1wms_A 45 ----------LNKDLEV-DGHFVTMQIWDTAGQER-------------FRSLRTPFYRGSDCCLLTFSVDD-SQSFQNLS 99 (177)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEECCCCGG-------------GHHHHGGGGTTCSEEEEEEETTC-HHHHHTHH
T ss_pred ----------EEEEEEE-CCEEEEEEEEeCCCchh-------------hhhhHHHHHhcCCEEEEEEECcC-HHHHHHHH
Confidence 0000111 01123689999999432 25567789999998777654433 22111
Q ss_pred HHHHHHHHhC----CCCCceEEEeccCcccCc
Q 006928 191 DAIKLAREVD----PTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~~~~d----~~~~rti~VltK~D~~~~ 218 (625)
.++....... ..+.|+++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 131 (177)
T 1wms_A 100 NWKKEFIYYADVKEPESFPFVILGNKIDISER 131 (177)
T ss_dssp HHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC
T ss_pred HHHHHHHHHccccccCCCcEEEEEECCccccc
Confidence 1222222221 256899999999999743
No 63
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.30 E-value=1.8e-12 Score=131.05 Aligned_cols=152 Identities=21% Similarity=0.279 Sum_probs=87.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccc-cccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
..+.|+++|++|+|||||+|+|+|..+ +.+.-+ +|...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~---------------------------------------- 40 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEK---------------------------------------- 40 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEE----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEe----------------------------------------
Confidence 357899999999999999999999875 333211 11111
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCCCccccH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATS 190 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi--~~~~~iIl~v~~a~~d~~~~ 190 (625)
.... +.. +...+.||||||....... ... ..++..|+ .++|++|++++..+ . .
T Consensus 41 -----------~~~~--~~~-~~~~~~l~DtpG~~~~~~~----~~~---~~~~~~~~~~~~~d~vi~v~D~~~-~---~ 95 (271)
T 3k53_A 41 -----------KEGI--MEY-REKEFLVVDLPGIYSLTAH----SID---ELIARNFILDGNADVIVDIVDSTC-L---M 95 (271)
T ss_dssp -----------EEEE--EEE-TTEEEEEEECCCCSCCCSS----CHH---HHHHHHHHHTTCCSEEEEEEEGGG-H---H
T ss_pred -----------eEEE--EEE-CCceEEEEeCCCccccccC----CHH---HHHHHHhhhccCCcEEEEEecCCc-c---h
Confidence 0001 111 1245899999998864432 111 33556677 68998777665443 1 2
Q ss_pred HHHHHHHHhCCCC-CceEEEeccCcccCccc---cHHHHHhCcccccCCCeEEEEeCChhhhhccCCHH
Q 006928 191 DAIKLAREVDPTG-ERTFGVLTKLDLMDKGT---NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (625)
Q Consensus 191 ~~l~l~~~~d~~~-~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (625)
..+.+..++...+ .|+++|+||+|+.+... +...+ . ..++.+++.+......++.+....+
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l-~---~~lg~~~~~~Sa~~g~gi~~l~~~i 160 (271)
T 3k53_A 96 RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKM-R---KELGVPVIPTNAKKGEGVEELKRMI 160 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHH-H---HHHSSCEEECBGGGTBTHHHHHHHH
T ss_pred hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHH-H---HHcCCcEEEEEeCCCCCHHHHHHHH
Confidence 3333444444445 89999999999875321 21121 1 2334555555554444444444333
No 64
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.30 E-value=5.8e-12 Score=118.10 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=46.8
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-ccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
..+.++||||+.+.... .....-.....|++.+|.+++++...+. .+....++..+....+.+.|+++|+||+|
T Consensus 52 ~~~~l~Dt~G~~~~~~~-----~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~D 126 (172)
T 2gj8_A 52 MPLHIIDTAGLREASDE-----VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126 (172)
T ss_dssp EEEEEEECCCCSCCSSH-----HHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred eEEEEEECCCcccchhH-----HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECcc
Confidence 34789999998653211 1211112234678999987776654332 12223344444444555789999999999
Q ss_pred ccCc
Q 006928 215 LMDK 218 (625)
Q Consensus 215 ~~~~ 218 (625)
+.+.
T Consensus 127 l~~~ 130 (172)
T 2gj8_A 127 ITGE 130 (172)
T ss_dssp HHCC
T ss_pred CCcc
Confidence 9653
No 65
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=2.6e-12 Score=119.26 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=44.0
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HHHHHHHHHhC--CCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SDAIKLAREVD--PTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~-~~~l~l~~~~d--~~~~rti~Vlt 211 (625)
..+.|+||||..+. ..+...|++.+|++|+++...+.. +.. ..++..+.+.. ..+.|+++|+|
T Consensus 51 ~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~n 117 (172)
T 2erx_A 51 CTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 117 (172)
T ss_dssp EEEEEEECCSCSSC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEE
T ss_pred EEEEEEECCCchhh-------------HHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEE
Confidence 35899999995431 456677888899887766544321 111 12222233332 13689999999
Q ss_pred cCcccCcc
Q 006928 212 KLDLMDKG 219 (625)
Q Consensus 212 K~D~~~~~ 219 (625)
|+|+.+..
T Consensus 118 K~Dl~~~~ 125 (172)
T 2erx_A 118 KCDESPSR 125 (172)
T ss_dssp CGGGGGGC
T ss_pred cccccccc
Confidence 99997653
No 66
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.30 E-value=4.1e-12 Score=122.11 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=69.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|.+|+|||||+|+|++..+.+......+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~----------------------------------------- 62 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEF----------------------------------------- 62 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCE-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCccccee-----------------------------------------
Confidence 456899999999999999999999875221111000000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--- 190 (625)
....+.+ ......+.|+||||... ...+...|++.+|++|+++...+ .....
T Consensus 63 ----------~~~~~~~-~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 117 (200)
T 2o52_A 63 ----------GSRVVNV-GGKTVKLQIWDTAGQER-------------FRSVTRSYYRGAAGALLVYDITS-RETYNSLA 117 (200)
T ss_dssp ----------EEEEEEE-TTEEEEEEEECCTTHHH-------------HSCCCHHHHTTCSEEEEEEETTC-HHHHHTHH
T ss_pred ----------EEEEEEE-CCeeeEEEEEcCCCcHh-------------HHHHHHHHhccCCEEEEEEECcC-HHHHHHHH
Confidence 0001111 11124689999999422 23446678999998887665443 22111
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++..+......+.++++|+||+|+.+.
T Consensus 118 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 118 AWLTDARTLASPNIVVILCGNKKDLDPE 145 (200)
T ss_dssp HHHHHHHHHTCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 2233334444557899999999999754
No 67
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.30 E-value=3.3e-12 Score=117.59 Aligned_cols=116 Identities=18% Similarity=0.213 Sum_probs=69.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
.+|+|+|.+|+|||||+|+|++..+.+ .....+..... .
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~-~--------------------------------------- 42 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD-ECDPTIEDSYR-K--------------------------------------- 42 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEE-E---------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCccceEEE-E---------------------------------------
Confidence 379999999999999999999887532 21111111000 0
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---H
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---A 192 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~ 192 (625)
.+.+ ......+.++||||.... ..+...|+..+|++|+++...+ ...... +
T Consensus 43 -----------~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~ 96 (166)
T 2ce2_X 43 -----------QVVI-DGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINN-TKSFEDIHQY 96 (166)
T ss_dssp -----------EEEE-TTEEEEEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEEETTC-HHHHHHHHHH
T ss_pred -----------EEEE-CCEEEEEEEEECCCchhh-------------hHHHHHhhccCCEEEEEEECCC-HHHHHHHHHH
Confidence 0001 111245889999995431 3355678888998877665433 222122 2
Q ss_pred HHHHHH-hCCCCCceEEEeccCcccCc
Q 006928 193 IKLARE-VDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 193 l~l~~~-~d~~~~rti~VltK~D~~~~ 218 (625)
+..+.. ....+.|+++|+||+|+.+.
T Consensus 97 ~~~i~~~~~~~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 97 REQIKRVKDSDDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp HHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred HHHHHHhcCCCCCcEEEEEEchhhhhc
Confidence 222222 23347899999999999864
No 68
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.30 E-value=7.7e-12 Score=118.80 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=71.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
..+|+|+|.+|+|||||+|+|++..+.+......+ +...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~---~~~~-------------------------------------- 60 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG---IDFK-------------------------------------- 60 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCC---CEEE--------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcee---EEEE--------------------------------------
Confidence 46899999999999999999999876322111000 0000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SD 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~---~~ 191 (625)
...+.+ ......+.|+||||.... ..+...|++.+|++|+++...+ .... ..
T Consensus 61 ----------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~-~~s~~~~~~ 115 (189)
T 2gf9_A 61 ----------VKTVYR-HDKRIKLQIWDTAGQERY-------------RTITTAYYRGAMGFLLMYDIAN-QESFAAVQD 115 (189)
T ss_dssp ----------EEEEEE-TTEEEEEEEEECCSCCSS-------------CCSGGGGGTTCSEEEEEEETTC-HHHHHTHHH
T ss_pred ----------EEEEEE-CCeEEEEEEEeCCCcHHH-------------hhhHHHhccCCCEEEEEEECCC-HHHHHHHHH
Confidence 000001 111246899999995432 1235678899998877665433 2111 12
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++..+......+.++++|+||+|+.+.
T Consensus 116 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 116 WATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccc
Confidence 333344444457899999999999764
No 69
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.29 E-value=1.2e-11 Score=116.95 Aligned_cols=117 Identities=17% Similarity=0.187 Sum_probs=69.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
.+|+|+|.+|+|||||+|+|++..+ +.....++.......
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~--------------------------------------- 44 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQ--------------------------------------- 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEE---------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEE---------------------------------------
Confidence 4799999999999999999998875 222222221110000
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---HH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DA 192 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~~ 192 (625)
+ ........+.|+||||.... ..+...|++.+|+++++++..+ ..... .+
T Consensus 45 ------------~-~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~ 97 (189)
T 4dsu_A 45 ------------V-VIDGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINN-TKSFEDIHHY 97 (189)
T ss_dssp ------------E-EETTEEEEEEEEECCCC----------------CTTHHHHHHHCSEEEEEEETTC-HHHHHHHHHH
T ss_pred ------------E-EECCcEEEEEEEECCCcHHH-------------HHHHHHHHhcCCEEEEEEECCC-HHHHHHHHHH
Confidence 0 00111234789999994432 3346678888998777655433 21111 12
Q ss_pred HH-HHHHhCCCCCceEEEeccCcccCcc
Q 006928 193 IK-LAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 193 l~-l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+. +.......+.|+++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 125 (189)
T 4dsu_A 98 REQIKRVKDSEDVPMVLVGNKCDLPSRT 125 (189)
T ss_dssp HHHHHHHTTCSCCCEEEEEECTTSSSCS
T ss_pred HHHHHHhcCCCCCcEEEEEECccCcccc
Confidence 22 2233445578999999999997543
No 70
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.29 E-value=3e-12 Score=124.55 Aligned_cols=110 Identities=14% Similarity=0.090 Sum_probs=61.5
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~---~~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.||||||..... .+...|+..+|++|++++. +..... ..++..+....+.+.++++|+||
T Consensus 61 ~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 126 (218)
T 4djt_A 61 IKFNVWDTAGQEKKA-------------VLKDVYYIGASGAILFFDV-TSRITCQNLARWVKEFQAVVGNEAPIVVCANK 126 (218)
T ss_dssp EEEEEEEECSGGGTS-------------CCCHHHHTTCSEEEEEEET-TCHHHHHTHHHHHHHHHHHHCSSSCEEEEEEC
T ss_pred EEEEEEecCCchhhc-------------hHHHHHhhcCCEEEEEEeC-CCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 458999999965432 2345678899988776544 432221 22334445455567899999999
Q ss_pred CcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHHH
Q 006928 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (625)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (625)
+|+.+......+.........+..|+.+...+..++++....+....
T Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp TTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred CCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 99976532211111111122334566666666666655555554443
No 71
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.29 E-value=3.5e-12 Score=122.55 Aligned_cols=158 Identities=14% Similarity=0.099 Sum_probs=85.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|.+|+|||||+|+|++..+ +......+.... .. .
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~-~~---~--------------------------------- 64 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEF-SEGYDPTVENTY-SK---I--------------------------------- 64 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSCCCCCSEEEE-EE---E---------------------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCC-CCCCCCccceEE-EE---E---------------------------------
Confidence 456899999999999999999999875 222111111110 00 0
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
+ ........+.||||||..... .+...|++.+|++|+++...+ ........
T Consensus 65 --------------~-~~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 115 (201)
T 3oes_A 65 --------------V-TLGKDEFHLHLVDTAGQDEYS-------------ILPYSFIIGVHGYVLVYSVTS-LHSFQVIE 115 (201)
T ss_dssp --------------E-C----CEEEEEEEECCCCTTC-------------CCCGGGTTTCCEEEEEEETTC-HHHHHHHH
T ss_pred --------------E-EECCEEEEEEEEECCCccchH-------------HHHHHHHhcCCEEEEEEeCCC-HHHHHHHH
Confidence 0 001122457999999954322 234578899998877665443 22222222
Q ss_pred HHHHHh----CCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 006928 194 KLAREV----DPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (625)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (625)
.+...+ ...+.|+++|+||+|+.+................+..|+.+...+..++++....+...
T Consensus 116 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (201)
T 3oes_A 116 SLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQE 184 (201)
T ss_dssp HHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 233333 23468999999999997654311111110011233455555555556655554444433
No 72
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.29 E-value=3e-12 Score=119.88 Aligned_cols=118 Identities=21% Similarity=0.224 Sum_probs=70.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
.+|+|+|.+|+|||||+|+|++..+.+......+.-....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~---------------------------------------- 54 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK---------------------------------------- 54 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEE----------------------------------------
Confidence 5899999999999999999998775322111111111000
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDA 192 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~---~~~ 192 (625)
.+.+ ......+.|+||||.... ..+...|++++|++|+++...+ .... ..+
T Consensus 55 -----------~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~ 108 (179)
T 2y8e_A 55 -----------TMYL-EDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSTVAVVVYDITN-TNSFHQTSKW 108 (179)
T ss_dssp -----------EEEE-TTEEEEEEEEEECCSGGG-------------GGGSHHHHHTCSEEEEEEETTC-HHHHHTHHHH
T ss_pred -----------EEEE-CCeEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCC-HHHHHHHHHH
Confidence 0001 011135899999994332 3345678899998877655433 2111 122
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+..+....+.+.|+++|+||+|+.+..
T Consensus 109 ~~~i~~~~~~~~piilv~nK~Dl~~~~ 135 (179)
T 2y8e_A 109 IDDVRTERGSDVIIMLVGNKTDLSDKR 135 (179)
T ss_dssp HHHHHHHHTTSSEEEEEEECGGGGGGC
T ss_pred HHHHHHhcCCCCcEEEEEECCcccccC
Confidence 323333334578999999999997643
No 73
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.29 E-value=7e-12 Score=120.84 Aligned_cols=119 Identities=18% Similarity=0.282 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|++|+|||||+++|++..+ +...+...... ..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~--~~------------------------------------- 64 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVD--FM------------------------------------- 64 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEE--EE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCcccee--EE-------------------------------------
Confidence 456899999999999999999998865 32221111000 00
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~---~ 190 (625)
...+.+. .....+.|+||||... +..+...|++.+|++|++++..+. ... .
T Consensus 65 -----------~~~~~~~-~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~~~-~s~~~~~ 118 (201)
T 2ew1_A 65 -----------IKTVEIN-GEKVKLQIWDTAGQER-------------FRSITQSYYRSANALILTYDITCE-ESFRCLP 118 (201)
T ss_dssp -----------EEEEEET-TEEEEEEEEEECCSGG-------------GHHHHGGGSTTCSEEEEEEETTCH-HHHHTHH
T ss_pred -----------EEEEEEC-CEEEEEEEEECCCcHH-------------HHHHHHHHHhcCCEEEEEEECCCH-HHHHHHH
Confidence 0000010 1113589999999432 256678899999988876654332 111 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++..+....+.+.++++|+||+|+.+.
T Consensus 119 ~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 119 EWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 3444455555667899999999999754
No 74
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.29 E-value=3.6e-12 Score=119.64 Aligned_cols=120 Identities=13% Similarity=0.205 Sum_probs=66.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|.+|+|||||+++|++..+.+......+.-.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 45 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADF----------------------------------------- 45 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSC-----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEE-----------------------------------------
Confidence 457899999999999999999999875221111110000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--- 190 (625)
....+.+.+.....+.|+||||... ...+...|++.+|++|+++...+ .....
T Consensus 46 ----------~~~~~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 101 (182)
T 1ky3_A 46 ----------LTKEVTVDGDKVATMQVWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVTN-ASSFENIK 101 (182)
T ss_dssp ----------EEEEECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEEETTC-HHHHHTHH
T ss_pred ----------EEEEEEEcCCcEEEEEEEECCCChH-------------hhhhhHHHhhcCCEEEEEEECCC-hHHHHHHH
Confidence 0001111112235689999999322 24556788999998887665433 22111
Q ss_pred HHHHHH-HHh---CCCCCceEEEeccCcccCc
Q 006928 191 DAIKLA-REV---DPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~-~~~---d~~~~rti~VltK~D~~~~ 218 (625)
.++..+ ... ...+.|+++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 102 SWRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred HHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 122212 211 2257899999999999643
No 75
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.29 E-value=7.6e-13 Score=137.83 Aligned_cols=126 Identities=22% Similarity=0.238 Sum_probs=76.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
+|.|++||.+|||||||||+|++..+...+...+|..|..-.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~-------------------------------------- 199 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGM-------------------------------------- 199 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEE--------------------------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEE--------------------------------------
Confidence 678999999999999999999987632222223444442111
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC---Cc-ccc-
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN---QD-IAT- 189 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~---~d-~~~- 189 (625)
+..++...++|+||||+...+... ..+ .....+.++.++++|++++.++ .+ +..
T Consensus 200 ---------------v~~~~~~~~~l~DtPG~i~~a~~~--~~l----~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~ 258 (342)
T 1lnz_A 200 ---------------VETDDGRSFVMADLPGLIEGAHQG--VGL----GHQFLRHIERTRVIVHVIDMSGLEGRDPYDDY 258 (342)
T ss_dssp ---------------EECSSSCEEEEEEHHHHHHHTTCT--TTT----HHHHHHHHHHCCEEEEEEESSCSSCCCHHHHH
T ss_pred ---------------EEeCCCceEEEecCCCCccccccc--chh----HHHHHHHHHhccEEEEEEECCcccccChHHHH
Confidence 222223568999999987643321 111 1223445567998877665543 11 111
Q ss_pred HHHHHHHHHhCC--CCCceEEEeccCcccCcc
Q 006928 190 SDAIKLAREVDP--TGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 190 ~~~l~l~~~~d~--~~~rti~VltK~D~~~~~ 219 (625)
..+...+..+.+ ...|.++|+||+|+.+..
T Consensus 259 ~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~ 290 (342)
T 1lnz_A 259 LTINQELSEYNLRLTERPQIIVANKMDMPEAA 290 (342)
T ss_dssp HHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH
T ss_pred HHHHHHHHHhhhhhcCCCEEEEEECccCCCCH
Confidence 122233444443 478999999999998653
No 76
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.29 E-value=6.1e-12 Score=116.93 Aligned_cols=118 Identities=23% Similarity=0.405 Sum_probs=69.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
+.|+++|++|+|||||+|+|+|..+ +.+ ..|.. +
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~-----~~~~~-----t----------------------------------- 37 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIG-----NWPGV-----T----------------------------------- 37 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC---------------C-----------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-ecc-----CCCCc-----c-----------------------------------
Confidence 5799999999999999999999864 222 11200 0
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccHHHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~--~~~~iIl~v~~a~~d~~~~~~l 193 (625)
+......+.+ +...+.++||||....... . ..+.+...|+. ++++++++++..+ . ....
T Consensus 38 -----~~~~~~~~~~---~~~~l~i~Dt~G~~~~~~~----~---~~~~~~~~~~~~~~~~~~i~v~D~~~--~--~~~~ 98 (165)
T 2wji_A 38 -----VEKKEGEFEY---NGEKFKVVDLPGVYSLTAN----S---IDEIIARDYIINEKPDLVVNIVDATA--L--ERNL 98 (165)
T ss_dssp -----CCCCEEEEEE---TTEEEEEEECCCCSCSSSS----S---HHHHHHHHHHHHHCCSEEEEEEETTC--H--HHHH
T ss_pred -----eeeeEEEEEE---CCcEEEEEECCCcccCCCc----c---hhHHHHHHHHhcCCCCEEEEEecCCc--h--hHhH
Confidence 0000011111 1246899999998754321 1 11345566764 8998776554433 1 1122
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+..++...+.|+++|.||+|+...
T Consensus 99 ~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (165)
T 2wji_A 99 YLTLQLMEMGANLLLALNKMDLAKS 123 (165)
T ss_dssp HHHHHHHHTTCCEEEEEECHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEEchHhccc
Confidence 2333333347899999999998643
No 77
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.29 E-value=7e-12 Score=119.06 Aligned_cols=119 Identities=16% Similarity=0.196 Sum_probs=72.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|.+|+|||||+|+|++..+.+......+.-.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----------------------------------------- 57 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDF----------------------------------------- 57 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCE-----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEE-----------------------------------------
Confidence 456899999999999999999998875221111100000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHH-HHHHHhhcCCCEEEEEEecCCCcccc---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIE-NMVRSYVEKPSCIILAISPANQDIAT--- 189 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~-~~v~~yi~~~~~iIl~v~~a~~d~~~--- 189 (625)
....+.+ ......+.|+||||..+ .. .++..|++++|++|+++...+ ..+.
T Consensus 58 ----------~~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~d~iilv~D~~~-~~s~~~~ 112 (189)
T 1z06_A 58 ----------RERAVDI-DGERIKIQLWDTAGQER-------------FRKSMVQHYYRNVHAVVFVYDMTN-MASFHSL 112 (189)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEECCCSHH-------------HHTTTHHHHHTTCCEEEEEEETTC-HHHHHTH
T ss_pred ----------EEEEEEE-CCEEEEEEEEECCCchh-------------hhhhhhHHHhcCCCEEEEEEECcC-HHHHHHH
Confidence 0000111 11124689999999322 23 567889999998877665433 2111
Q ss_pred HHHHH-HHHHhCCCCCceEEEeccCcccCc
Q 006928 190 SDAIK-LAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 190 ~~~l~-l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
..++. +.+.....+.++++|+||+|+.+.
T Consensus 113 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 113 PAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp HHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 12222 233333567899999999999764
No 78
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.29 E-value=9.4e-12 Score=118.45 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=71.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|++|+|||||+|+|++..+.+......+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----------------------------------------- 58 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF----------------------------------------- 58 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSE-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccccee-----------------------------------------
Confidence 345899999999999999999999876322111101000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~---~ 190 (625)
....+.+. .....+.|+||||.... ..+...|++++|++|+++...+. ... .
T Consensus 59 ----------~~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~ 113 (191)
T 2a5j_A 59 ----------GARMVNID-GKQIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRR-ETFNHLT 113 (191)
T ss_dssp ----------EEEEEEET-TEEEEEEEECCTTGGGT-------------SCCCHHHHTTCSEEEEEEETTCH-HHHHTHH
T ss_pred ----------EEEEEEEC-CEEEEEEEEECCCchhh-------------hhhHHHHhccCCEEEEEEECCCH-HHHHHHH
Confidence 00011111 11246899999995432 22356788999988876654432 111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++..+......+.++++|+||+|+.+.
T Consensus 114 ~~l~~i~~~~~~~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 114 SWLEDARQHSSSNMVIMLIGNKSDLESR 141 (191)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCCc
Confidence 2333344444557899999999999754
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.28 E-value=7.1e-12 Score=119.72 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=72.4
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
...+.|+|+|.+|+|||||+++|++..+....... |.-.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~---------------------------------------- 53 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGY---------------------------------------- 53 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSE----------------------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccce----------------------------------------
Confidence 46779999999999999999999998762211111 1110
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
.... +. .....+.||||||.... ..+...|++++|++|+++...+ .......
T Consensus 54 ---------~~~~----~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~-~~s~~~~ 105 (199)
T 4bas_A 54 ---------NVET----FE-KGRVAFTVFDMGGAKKF-------------RGLWETYYDNIDAVIFVVDSSD-HLRLCVV 105 (199)
T ss_dssp ---------EEEE----EE-ETTEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEEEEEETTC-GGGHHHH
T ss_pred ---------eEEE----EE-eCCEEEEEEECCCCHhH-------------HHHHHHHHhcCCEEEEEEECCc-HHHHHHH
Confidence 0000 11 12356899999996432 3445678999998887665443 2222222
Q ss_pred HHHHHHhCC-----------CCCceEEEeccCcccCcc
Q 006928 193 IKLAREVDP-----------TGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 193 l~l~~~~d~-----------~~~rti~VltK~D~~~~~ 219 (625)
..+...+.. .+.++++|+||+|+....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 143 (199)
T 4bas_A 106 KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK 143 (199)
T ss_dssp HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC
Confidence 222222222 278999999999998653
No 80
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.28 E-value=5.8e-12 Score=116.70 Aligned_cols=117 Identities=16% Similarity=0.235 Sum_probs=71.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
..|+|+|.+|+|||||+|+|++..+.+......+... .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~---~--------------------------------------- 41 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF---L--------------------------------------- 41 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE---E---------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE---E---------------------------------------
Confidence 4799999999999999999998875321111111000 0
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH---
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA--- 192 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~--- 192 (625)
...+.+ ......+.|+||||.... ..+...|++++|++|+++. ++........
T Consensus 42 ---------~~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~ 97 (170)
T 1ek0_A 42 ---------TQRVTI-NEHTVKFEIWDTAGQERF-------------ASLAPXYYRNAQAALVVYD-VTKPQSFIKARHW 97 (170)
T ss_dssp ---------EEEEEE-TTEEEEEEEEEECCSGGG-------------GGGHHHHHTTCSEEEEEEE-TTCHHHHHHHHHH
T ss_pred ---------EEEEEE-CCEEEEEEEEECCCChhh-------------hhhhhhhhccCcEEEEEEe-cCChHHHHHHHHH
Confidence 000001 111235899999994321 3456788999998877654 4432222222
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
+..+......+.++++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 98 VKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred HHHHHHhcCCCCcEEEEEECCCcccc
Confidence 22233333457899999999999865
No 81
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.28 E-value=1.4e-11 Score=116.14 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|++|+|||||+|+|++..+ +......+.... ...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~-~~~------------------------------------ 58 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSY-LKH------------------------------------ 58 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEE-EEE------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCcccee-EEE------------------------------------
Confidence 455899999999999999999998764 322222221111 000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~-~~ 191 (625)
+ ........+.|+||||.... ..+...|++++|++|+++...+.. +.. ..
T Consensus 59 --------------~-~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 110 (183)
T 3kkq_A 59 --------------T-EIDNQWAILDVLDTAGQEEF-------------SAMREQYMRTGDGFLIVYSVTDKASFEHVDR 110 (183)
T ss_dssp --------------E-EETTEEEEEEEEECCSCGGG-------------CSSHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred --------------E-EeCCcEEEEEEEECCCchhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 0 00111134778999995432 233567888899888766544321 111 12
Q ss_pred HHH-HHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIK-LAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~-l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++. +.+.....+.|+++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 111 FHQLILRVKDRESFPMILVANKVDLMHL 138 (183)
T ss_dssp HHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred HHHHHHHhcCCCCCcEEEEEECCCchhc
Confidence 222 333345567899999999999764
No 82
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.28 E-value=3.1e-12 Score=118.42 Aligned_cols=117 Identities=20% Similarity=0.226 Sum_probs=69.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
..+|+|+|.+|+|||||+|+|++..+ +......+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~------------------------------------------ 41 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVD------------------------------------------ 41 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSS------------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEE------------------------------------------
Confidence 45899999999999999999998865 22111110000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---H
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---D 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~ 191 (625)
+ ....+.+ ......+.|+||||.... ..+...|++.+|++|+++...+ ..... .
T Consensus 42 ------~--~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~ 98 (168)
T 1z2a_A 42 ------F--LERQIQV-NDEDVRLMLWDTAGQEEF-------------DAITKAYYRGAQACVLVFSTTD-RESFEAISS 98 (168)
T ss_dssp ------E--EEEEEEE-TTEEEEEEEECCTTGGGT-------------TCCCHHHHTTCCEEEEEEETTC-HHHHHTHHH
T ss_pred ------E--EEEEEEE-CCEEEEEEEEcCCCcHhH-------------HHHHHHHhcCCCEEEEEEECcC-HHHHHHHHH
Confidence 0 0000111 111246899999994432 2335678899998877665443 22111 1
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++..+.... .+.|+++|+||+|+.+.
T Consensus 99 ~~~~i~~~~-~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 99 WREKVVAEV-GDIPTALVQNKIDLLDD 124 (168)
T ss_dssp HHHHHHHHH-CSCCEEEEEECGGGGGG
T ss_pred HHHHHHHhC-CCCCEEEEEECcccCcc
Confidence 222222222 36899999999999764
No 83
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.28 E-value=4.3e-12 Score=119.19 Aligned_cols=120 Identities=14% Similarity=0.190 Sum_probs=72.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|.+|+|||||+|+|++..+.+......+...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 49 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAF----------------------------------------- 49 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSE-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEE-----------------------------------------
Confidence 345899999999999999999999875321111100000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~-- 191 (625)
....+.+ ......+.|+||||.... ..+...|++.+|++|+++. ++.......
T Consensus 50 ----------~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~ 104 (181)
T 2efe_B 50 ----------FSQTLAV-NDATVKFEIWDTAGQERY-------------HSLAPMYYRGAAAAIIVFD-VTNQASFERAK 104 (181)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEECCCSGGG-------------GGGTHHHHTTCSEEEEEEE-TTCHHHHHHHH
T ss_pred ----------EEEEEEE-CCEEEEEEEEeCCCChhh-------------hhhhHHHhccCCEEEEEEE-CCCHHHHHHHH
Confidence 0000001 111246899999994321 3446678899998877654 443222222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 192 -AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
++..+......+.|+++|+||+|+.+..
T Consensus 105 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 105 KWVQELQAQGNPNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred HHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence 2223333334478899999999997643
No 84
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.28 E-value=1.1e-11 Score=119.40 Aligned_cols=119 Identities=17% Similarity=0.177 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|++|+|||||+++|++..+ +......+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~----------------------------------------- 44 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVD----------------------------------------- 44 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCC-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccce-----------------------------------------
Confidence 356899999999999999999999875 22211100000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~-- 191 (625)
+ ....+.+ ......+.|+||||.... ..+...|++.+|++|+++. ++.......
T Consensus 45 -------~--~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~vilv~d-~~~~~s~~~~~ 100 (206)
T 2bcg_Y 45 -------F--KIKTVEL-DGKTVKLQIWDTAGQERF-------------RTITSSYYRGSHGIIIVYD-VTDQESFNGVK 100 (206)
T ss_dssp -------E--EEEEEEE-TTEEEEEEEECCTTTTTT-------------TCCCGGGGTTCSEEEEEEE-TTCHHHHHHHH
T ss_pred -------e--EEEEEEE-CCEEEEEEEEeCCChHHH-------------HHHHHHhccCCCEEEEEEE-CcCHHHHHHHH
Confidence 0 0000111 111236899999995432 2234678899998777654 443222222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++..+......+.++++|+||+|+.+.
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 101 MWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 233344444557899999999999764
No 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.27 E-value=6.8e-12 Score=116.58 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|++|+|||||+|+|.+..+... ..|...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~----------------------------------------- 41 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTT---IPTIGF----------------------------------------- 41 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC---CCCSSE-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCc---CCcCcc-----------------------------------------
Confidence 456899999999999999999998765210 111110
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
... .+.+ +...+.++||||.... ..+...|++++|++|+++.. +....-....
T Consensus 42 --------~~~--~~~~---~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~-~~~~s~~~~~ 94 (171)
T 1upt_A 42 --------NVE--TVTY---KNLKFQVWDLGGLTSI-------------RPYWRCYYSNTDAVIYVVDS-CDRDRIGISK 94 (171)
T ss_dssp --------EEE--EEEE---TTEEEEEEEECCCGGG-------------GGGGGGGCTTCSEEEEEEET-TCCTTHHHHH
T ss_pred --------ceE--EEEE---CCEEEEEEECCCChhh-------------hHHHHHHhccCCEEEEEEEC-CCHHHHHHHH
Confidence 000 0111 1356899999996432 33456788999988776554 3322222222
Q ss_pred HHHHH-hC---CCCCceEEEeccCcccCcc
Q 006928 194 KLARE-VD---PTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 194 ~l~~~-~d---~~~~rti~VltK~D~~~~~ 219 (625)
.+... +. ..+.|+++|+||+|+.+..
T Consensus 95 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 95 SELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 22222 22 2578999999999998653
No 86
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.27 E-value=6.3e-12 Score=116.64 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=39.9
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HHHHH-HHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SDAIK-LAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~-~~~l~-l~~~~d~~~~rti~VltK 212 (625)
..+.++||||..... ..+...|++.+|+++++++..+.. +.. ..++. +.......+.|+++|+||
T Consensus 51 ~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (169)
T 3q85_A 51 VTLIVYDIWEQGDAG------------GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 118 (169)
T ss_dssp EEEEEECCCCC--------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEEECCCccccc------------hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeC
Confidence 467899999964321 123445677899887766543311 111 12222 223233347899999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+.+.
T Consensus 119 ~Dl~~~ 124 (169)
T 3q85_A 119 SDLARS 124 (169)
T ss_dssp TTCGGG
T ss_pred cchhhc
Confidence 999754
No 87
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.27 E-value=1.3e-11 Score=118.73 Aligned_cols=120 Identities=21% Similarity=0.267 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|++|+|||||+++|++..+ +... .|+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~-----~~t~--------------------------------------- 62 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAF-SERQ-----GSTI--------------------------------------- 62 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCC-CCCC-----CCCc---------------------------------------
Confidence 456899999999999999999998875 2111 1100
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~-~~ 191 (625)
| ..+. ...+.+ ......+.|+||||..+ ...+...|++++|++|++++..+.. +.. ..
T Consensus 63 --~--~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~ 122 (201)
T 2hup_A 63 --G--VDFT--MKTLEI-QGKRVKLQIWDTAGQER-------------FRTITQSYYRSANGAILAYDITKRSSFLSVPH 122 (201)
T ss_dssp ------CEE--EEEEEE-TTEEEEEEEECCTTCGG-------------GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHH
T ss_pred --c--eEEE--EEEEEE-CCEEEEEEEEECCCcHh-------------HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 0 0000 001111 11124689999999432 2556788999999888866543321 111 12
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++..+......+.++++|+||+|+.+.
T Consensus 123 ~~~~i~~~~~~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 123 WIEDVRKYAGSNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHhcCCCCCEEEEEECCccccc
Confidence 333344444567899999999999764
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.27 E-value=1.5e-11 Score=113.42 Aligned_cols=111 Identities=18% Similarity=0.223 Sum_probs=70.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
+|+|+|++|+|||||+++|++..+ +.. .+|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~-~~~--~~t~~~-------------------------------------------- 34 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGF-------------------------------------------- 34 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS-SCC--CCCSSC--------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc-Ccc--cCcCce--------------------------------------------
Confidence 699999999999999999998765 211 111110
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHH
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~ 196 (625)
.. .. +.. ....+.|+||||... ...+...|++++|++|+++.. +..-.-.....+.
T Consensus 35 -----~~--~~--~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~~~~ 90 (164)
T 1r8s_A 35 -----NV--ET--VEY-KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDS-NDRERVNEAREEL 90 (164)
T ss_dssp -----CE--EE--EEC-SSCEEEEEECCCCGG-------------GHHHHHHHTTTCSEEEEEEET-TCGGGHHHHHHHH
T ss_pred -----eE--EE--EEE-CCEEEEEEEcCCChh-------------hHHHHHHHhccCCEEEEEEEC-CCHHHHHHHHHHH
Confidence 00 00 111 235789999999642 255677899999988876544 3322222222233
Q ss_pred HHh----CCCCCceEEEeccCcccCc
Q 006928 197 REV----DPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 197 ~~~----d~~~~rti~VltK~D~~~~ 218 (625)
..+ ...+.|+++|+||+|+.+.
T Consensus 91 ~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 91 MRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHhchhhcCCeEEEEEECcCCcCC
Confidence 332 2246899999999999764
No 89
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.27 E-value=1.7e-11 Score=116.63 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|.+|+|||||+|+|++..+.+......+ .. ..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~-~~--~~------------------------------------- 53 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG-VD--FK------------------------------------- 53 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS-EE--EE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccc-eE--EE-------------------------------------
Confidence 345899999999999999999999875322111110 00 00
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
...+.+ ......+.|+||||.... ..+...|++++|++|+++. ++.........
T Consensus 54 -----------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~ 107 (195)
T 1x3s_A 54 -----------VKTISV-DGNKAKLAIWDTAGQERF-------------RTLTPSYYRGAQGVILVYD-VTRRDTFVKLD 107 (195)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEECSSGGG-------------CCSHHHHHTTCCEEEEEEE-TTCHHHHHTHH
T ss_pred -----------EEEEEE-CCeEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEE-CcCHHHHHHHH
Confidence 000001 111246899999995432 2335678899998777654 44322222222
Q ss_pred HHHHHhC----CCCCceEEEeccCcccCc
Q 006928 194 KLAREVD----PTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d----~~~~rti~VltK~D~~~~ 218 (625)
.+...+. ..+.++++|+||+|+.+.
T Consensus 108 ~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~ 136 (195)
T 1x3s_A 108 NWLNELETYCTRNDIVNMLVGNKIDKENR 136 (195)
T ss_dssp HHHHHHTTCCSCSCCEEEEEEECTTSSSC
T ss_pred HHHHHHHHhcCcCCCcEEEEEECCcCccc
Confidence 3334443 246789999999999543
No 90
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.26 E-value=7.6e-12 Score=120.41 Aligned_cols=119 Identities=15% Similarity=0.272 Sum_probs=69.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|.+|+|||||+|+|++..+.+......+.-...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--------------------------------------- 47 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT--------------------------------------- 47 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEE---------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEE---------------------------------------
Confidence 45689999999999999999999987632211111111000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--- 190 (625)
..+.+ ......+.||||||.... ..+...|++++|++|+++. ++......
T Consensus 48 ------------~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~ 100 (207)
T 1vg8_A 48 ------------KEVMV-DDRLVTMQIWDTAGQERF-------------QSLGVAFYRGADCCVLVFD-VTAPNTFKTLD 100 (207)
T ss_dssp ------------EEEES-SSCEEEEEEEEECSSGGG-------------SCSCCGGGTTCSEEEEEEE-TTCHHHHHTHH
T ss_pred ------------EEEEE-CCEEEEEEEEeCCCcHHH-------------HHhHHHHHhCCcEEEEEEE-CCCHHHHHHHH
Confidence 00000 111246899999995432 2234568899998777654 43322111
Q ss_pred HHHH-HHHHhC---CCCCceEEEeccCcccCc
Q 006928 191 DAIK-LAREVD---PTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~-l~~~~d---~~~~rti~VltK~D~~~~ 218 (625)
.++. +..... +.+.|+++|+||+|+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (207)
T 1vg8_A 101 SWRDEFLIQASPRDPENFPFVVLGNKIDLENR 132 (207)
T ss_dssp HHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred HHHHHHHHhcccccCCCCcEEEEEECCCCccc
Confidence 1222 222221 246899999999999743
No 91
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.26 E-value=1.2e-11 Score=117.43 Aligned_cols=118 Identities=18% Similarity=0.191 Sum_probs=65.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.-..|+|+|..|+|||||+|+|++..+.+ ....++......
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~-------------------------------------- 60 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRK-------------------------------------- 60 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEEE--------------------------------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCcc-ccCCccceEEEE--------------------------------------
Confidence 34589999999999999999999886522 111111111000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~-- 191 (625)
.+.+ ......+.||||||... ...+...|++.+|++|++++..+ .....+
T Consensus 61 -------------~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 112 (190)
T 3con_A 61 -------------QVVI-DGETCLLDILDTAGQEE-------------YSAMRDQYMRTGEGFLCVFAINN-SKSFADIN 112 (190)
T ss_dssp -------------EEEE-TTEEEEEEEEECCC------------------------CTTCSEEEEEEETTC-HHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCChHH-------------HHHHHHHhhCcCCEEEEEEECcC-HHHHHHHH
Confidence 0001 11124589999999432 24556788999998877654433 222222
Q ss_pred -HHHHHHH-hCCCCCceEEEeccCcccCc
Q 006928 192 -AIKLARE-VDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 -~l~l~~~-~d~~~~rti~VltK~D~~~~ 218 (625)
++..+.. ....+.++++|+||+|+.+.
T Consensus 113 ~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~ 141 (190)
T 3con_A 113 LYREQIKRVKDSDDVPMVLVGNKCDLPTR 141 (190)
T ss_dssp HHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred HHHHHHHHHhCCCCCeEEEEEECCcCCcc
Confidence 2222222 23357899999999998763
No 92
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.25 E-value=1e-11 Score=116.77 Aligned_cols=157 Identities=17% Similarity=0.106 Sum_probs=84.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.|+|+|.+|+|||||+|+|++..+ +......+.......
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 46 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKL------------------------------------- 46 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEE-------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEE-------------------------------------
Confidence 457899999999999999999997764 322222222111000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH-
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA- 192 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~- 192 (625)
+.+ ......+.|+||||..... .+...|++.+|++|+++...+. -.....
T Consensus 47 --------------~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~ 97 (181)
T 3t5g_A 47 --------------ITV-NGQEYHLQLVDTAGQDEYS-------------IFPQTYSIDINGYILVYSVTSI-KSFEVIK 97 (181)
T ss_dssp --------------EEE-TTEEEEEEEEECCCCCTTC-------------CCCGGGTTTCSEEEEEEETTCH-HHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEeCCCchhhh-------------HHHHHHHhcCCEEEEEEECCCH-HHHHHHH
Confidence 000 1112357899999965432 2245688899988876654331 111111
Q ss_pred --H-HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHH
Q 006928 193 --I-KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (625)
Q Consensus 193 --l-~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (625)
+ .+.+.....+.|+++|+||+|+.+......+.........+..|+.+...+..++.+....+..
T Consensus 98 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 165 (181)
T 3t5g_A 98 VIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIIL 165 (181)
T ss_dssp HHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Confidence 1 2334444557899999999999754321111111001123344566655555665555444433
No 93
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.25 E-value=1.2e-11 Score=114.49 Aligned_cols=118 Identities=15% Similarity=0.158 Sum_probs=70.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
...|+|+|.+|+|||||+|+|++..+.+.... |.-. ...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~~~-~~~-------------------------------------- 44 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQES--TIGA-AFL-------------------------------------- 44 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC--CSSE-EEE--------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ccce-EEE--------------------------------------
Confidence 45899999999999999999998765221110 1000 000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--- 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~--- 191 (625)
...+.+ ......+.|+||||.... ..+...|++++|++|+++.. +.......
T Consensus 45 ----------~~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~~ 99 (170)
T 1r2q_A 45 ----------TQTVCL-DDTTVKFEIWDTAGQERY-------------HSLAPMYYRGAQAAIVVYDI-TNEESFARAKN 99 (170)
T ss_dssp ----------EEEEEE-TTEEEEEEEEEECCSGGG-------------GGGHHHHHTTCSEEEEEEET-TCHHHHHHHHH
T ss_pred ----------EEEEEE-CCEEEEEEEEeCCCcHHh-------------hhhhHHhccCCCEEEEEEEC-CCHHHHHHHHH
Confidence 000001 111246899999995431 34567889999988776554 33222222
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++..+......+.++++|.||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 100 WVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECccCccc
Confidence 222233333446788999999999754
No 94
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.25 E-value=7.4e-12 Score=117.24 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=68.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
..+|+|+|++|+|||||+++|++..+ +....+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~-------------------------------------------- 40 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQTIG-------------------------------------------- 40 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGT-THHHHHTTT--------------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCCcee--------------------------------------------
Confidence 45899999999999999999998865 211110000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---H
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---D 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---~ 191 (625)
.......+.+.+.....+.|+||||.... ..+...|++++|++|+++...+. .... .
T Consensus 41 ------~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~ 100 (178)
T 2hxs_A 41 ------LDFFLRRITLPGNLNVTLQIWDIGGQTIG-------------GKMLDKYIYGAQGVLLVYDITNY-QSFENLED 100 (178)
T ss_dssp ------SSEEEEEEEETTTEEEEEEEEECTTCCTT-------------CTTHHHHHTTCSEEEEEEETTCH-HHHHTHHH
T ss_pred ------EEEEEEEEEeCCCCEEEEEEEECCCCccc-------------cchhhHHHhhCCEEEEEEECCCH-HHHHHHHH
Confidence 00000111111111256899999995432 23456789999988876654332 2111 2
Q ss_pred HHHHHHHhCC--CCCc-eEEEeccCcccCc
Q 006928 192 AIKLAREVDP--TGER-TFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~--~~~r-ti~VltK~D~~~~ 218 (625)
++..+....+ .+.+ +++|+||+|+.+.
T Consensus 101 ~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~ 130 (178)
T 2hxs_A 101 WYTVVKKVSEESETQPLVALVGNKIDLEHM 130 (178)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcccCCCCeEEEEEEccccccc
Confidence 2222222211 1445 7899999999764
No 95
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.25 E-value=9.8e-12 Score=118.16 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|.+|+|||||+|+|+|..+++.... .|.-. .
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~---~------------------------------------- 58 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGF---S------------------------------------- 58 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSE---E-------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-Cccce---e-------------------------------------
Confidence 566999999999999999999999873332221 11111 0
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
. -. +.. +...+.|+||||.... ..+...|++++|++|+++. ++.........
T Consensus 59 ---------~--~~--~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~ 110 (190)
T 2h57_A 59 ---------I--EK--FKS-SSLSFTVFDMSGQGRY-------------RNLWEHYYKEGQAIIFVID-SSDRLRMVVAK 110 (190)
T ss_dssp ---------E--EE--EEC-SSCEEEEEEECCSTTT-------------GGGGGGGGGGCSEEEEEEE-TTCHHHHHHHH
T ss_pred ---------E--EE--EEE-CCEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEE-CCCHHHHHHHH
Confidence 0 00 111 1257899999995432 3345678899998877654 44321112221
Q ss_pred H----HHHHhCC--CCCceEEEeccCcccCc
Q 006928 194 K----LAREVDP--TGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~----l~~~~d~--~~~rti~VltK~D~~~~ 218 (625)
. +.+.... .+.++++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 111 EELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp HHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred HHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 2 2222221 47899999999999764
No 96
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.25 E-value=3.3e-12 Score=120.41 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=38.2
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK 212 (625)
..+.|+||||... ...+...|++++|++|+++...+ ...... ++..+......+.|+++|+||
T Consensus 57 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piilv~nK 122 (183)
T 2fu5_C 57 IKLQIWDTAGQER-------------FRTITTAYYRGAMGIMLVYDITN-EKSFDNIRNWIRNIEEHASADVEKMILGNK 122 (183)
T ss_dssp EEEEEEEC----------------------CCTTTTTCSEEEEEEETTC-HHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEcCCCChh-------------hhhhHHHHHhcCCEEEEEEECcC-HHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 4689999999432 23455678899998877655433 222122 233333333457899999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+.+.
T Consensus 123 ~Dl~~~ 128 (183)
T 2fu5_C 123 CDVNDK 128 (183)
T ss_dssp --CCSC
T ss_pred ccCCcc
Confidence 999764
No 97
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.24 E-value=1e-11 Score=119.17 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=70.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|++|+|||||+|+|++..+.+ ... | +
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~-----~-------t--------------------------------- 60 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRE-NIS-----A-------T--------------------------------- 60 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCc-cCC-----C-------C---------------------------------
Confidence 45689999999999999999999987521 100 1 0
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---H
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~---~ 190 (625)
.| .+.....+.+ ......+.|+||||... ...+...|++.+|++|+++...+ .... .
T Consensus 61 -~~----~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~d~~~-~~s~~~~~ 120 (199)
T 2p5s_A 61 -LG----VDFQMKTLIV-DGERTVLQLWDTAGQER-------------FRSIAKSYFRKADGVLLLYDVTC-EKSFLNIR 120 (199)
T ss_dssp ---------CEEEEEEE-TTEEEEEEEEECTTCTT-------------CHHHHHHHHHHCSEEEEEEETTC-HHHHHTHH
T ss_pred -cc----ceeEEEEEEE-CCEEEEEEEEECCCCcc-------------hhhhHHHHHhhCCEEEEEEECCC-hHHHHHHH
Confidence 00 0000001111 11124589999999432 14567788999998887665433 2211 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccC
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~ 217 (625)
.++..++.....+.|+++|+||+|+.+
T Consensus 121 ~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 121 EWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp HHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECccccc
Confidence 233444555555789999999999974
No 98
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.24 E-value=1.7e-11 Score=115.86 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.-.+|+|+|++|+|||||+|+|++.. +.... .|...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~----------------------------------------- 52 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGF----------------------------------------- 52 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSE-----------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCcc-----------------------------------------
Confidence 35689999999999999999999876 21111 11111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
... .+.+ +...+.++||||..+ ...+...|++++|++|+++. ++.........
T Consensus 53 --------~~~--~~~~---~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~ 105 (186)
T 1ksh_A 53 --------NIK--TLEH---RGFKLNIWDVGGQKS-------------LRSYWRNYFESTDGLIWVVD-SADRQRMQDCQ 105 (186)
T ss_dssp --------EEE--EEEE---TTEEEEEEEECCSHH-------------HHTTGGGGCTTCSEEEEEEE-TTCGGGHHHHH
T ss_pred --------ceE--EEEE---CCEEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEE-CcCHHHHHHHH
Confidence 000 0111 235689999999532 24456788999998877654 44332222222
Q ss_pred HHHHHh----CCCCCceEEEeccCcccCcc
Q 006928 194 KLAREV----DPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~~~ 219 (625)
.+...+ ...+.|+++|+||+|+.+..
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 106 RELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 222222 22478999999999997653
No 99
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.24 E-value=1.9e-11 Score=115.84 Aligned_cols=114 Identities=15% Similarity=0.183 Sum_probs=70.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|.+|+|||||+|+|++..+. . ..| |
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~-----~~~-------t--------------------------------- 47 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--H-----TSP-------T--------------------------------- 47 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--E-----EEC-------C---------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--c-----CcC-------C---------------------------------
Confidence 3568999999999999999999987651 1 011 1
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
.++... .+.+ +...+.|+||||..+. ..+...|++++|++|+++...+ ...-....
T Consensus 48 -----~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~-~~s~~~~~ 103 (187)
T 1zj6_A 48 -----IGSNVE--EIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVDSTD-RERISVTR 103 (187)
T ss_dssp -----SCSSCE--EEEE---TTEEEEEEECCC-----------------CGGGHHHHTTCCEEEEEEETTC-TTTHHHHH
T ss_pred -----CccceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCC-HHHHHHHH
Confidence 001111 1111 2367899999996432 3345678899998877665443 22222222
Q ss_pred HHHHHh-C---CCCCceEEEeccCcccCc
Q 006928 194 KLAREV-D---PTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~-d---~~~~rti~VltK~D~~~~ 218 (625)
.+...+ . ..+.++++|+||+|+.+.
T Consensus 104 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 104 EELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp HHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 233332 2 257899999999999764
No 100
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.22 E-value=1.1e-11 Score=118.40 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|.+|+|||||+++|++..+.+.. .+.+... .. .
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~t~~~~--~~--~---------------------------------- 67 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-DPTLEST--YR--H---------------------------------- 67 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-CTTCCEE--EE--E----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccc-CCCCCce--EE--E----------------------------------
Confidence 3458999999999999999999998752211 1111100 00 0
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~-~~ 191 (625)
.+.+ ......+.|+||||... ..+...|++.+|++|+++...+.+ +.. ..
T Consensus 68 -------------~~~~-~~~~~~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~ 119 (196)
T 2atv_A 68 -------------QATI-DDEVVSMEILDTAGQED--------------TIQREGHMRWGEGFVLVYDITDRGSFEEVLP 119 (196)
T ss_dssp -------------EEEE-TTEEEEEEEEECCCCCC--------------CHHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCCCc--------------ccchhhhhccCCEEEEEEECcCHHHHHHHHH
Confidence 0001 11124588999999654 234567888999887766543321 111 12
Q ss_pred HHHHHHH-hCCCCCceEEEeccCcccCc
Q 006928 192 AIKLARE-VDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~-~d~~~~rti~VltK~D~~~~ 218 (625)
++..+.. ....+.|+++|+||+|+.+.
T Consensus 120 ~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 120 LKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp HHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 2222322 34457899999999999764
No 101
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.22 E-value=7.3e-12 Score=120.41 Aligned_cols=68 Identities=22% Similarity=0.215 Sum_probs=42.7
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HHHHHHHhCC---CCCceEEE
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIKLAREVDP---TGERTFGV 209 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~l~l~~~~d~---~~~rti~V 209 (625)
..+.|+||||.. ....+...|++++|++|+++. ++....... ++..+....+ .+.|+++|
T Consensus 73 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 138 (208)
T 2yc2_C 73 VELFLLDTAGSD-------------LYKEQISQYWNGVYYAILVFD-VSSMESFESCKAWFELLKSARPDRERPLRAVLV 138 (208)
T ss_dssp EEEEEEETTTTH-------------HHHHHHSTTCCCCCEEEEEEE-TTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEE
T ss_pred EEEEEEECCCcH-------------HHHHHHHHHHhhCcEEEEEEE-CCCHHHHHHHHHHHHHHHHhhcccccCCcEEEE
Confidence 468999999953 235677889999998877665 433222222 2333333333 57899999
Q ss_pred eccCcccC
Q 006928 210 LTKLDLMD 217 (625)
Q Consensus 210 ltK~D~~~ 217 (625)
+||+|+.+
T Consensus 139 ~nK~Dl~~ 146 (208)
T 2yc2_C 139 ANKTDLPP 146 (208)
T ss_dssp EECC----
T ss_pred EECcccch
Confidence 99999976
No 102
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.22 E-value=1.8e-11 Score=130.84 Aligned_cols=161 Identities=18% Similarity=0.193 Sum_probs=88.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.|+|+|..|+|||||+|+|+|.++.+.+ ..|.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-----~~~g---------------------------------------- 67 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-----DYAG---------------------------------------- 67 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC--------------------------------------------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccC-----CCCC----------------------------------------
Confidence 4678999999999999999999998762221 1110
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
.+.++....+...+...+.||||||.......++. . .+.+..|+.++|++|+++ +++..-....
T Consensus 68 -------tT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~-~-----~~~~~~~l~~aD~vllVv-D~~~~~~~~~-- 131 (423)
T 3qq5_A 68 -------TTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRL-R-----VEKARRVFYRADCGILVT-DSAPTPYEDD-- 131 (423)
T ss_dssp ---------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCC-C-----HHHHHHHHTSCSEEEEEC-SSSCCHHHHH--
T ss_pred -------eeeeeEEEEEEECCCCeEEEEECcCCCcccchhHH-H-----HHHHHHHHhcCCEEEEEE-eCCChHHHHH--
Confidence 00011111122222236899999998764322111 1 223567889999877755 5532222223
Q ss_pred HHHHHhCCCCCceEEEeccCcccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHHHH
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (625)
+...+...+.|+++|+||+|+.+.... +....-....+..++.+...+..++.+....+...
T Consensus 132 -~l~~l~~~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~ 193 (423)
T 3qq5_A 132 -VVNLFKEMEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEI 193 (423)
T ss_dssp -HHHHHHHTTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHH
T ss_pred -HHHHHHhcCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 334444447899999999999876543 22221122334455555555555555554444433
No 103
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.22 E-value=1.4e-10 Score=109.98 Aligned_cols=114 Identities=20% Similarity=0.208 Sum_probs=71.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
-.+|+|+|.+|+|||||+|+|++..+ +.... .|-.. .
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~-~t~~~---~-------------------------------------- 58 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQF-NEDMI-PTVGF---N-------------------------------------- 58 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CCSCC-CCCSE---E--------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCC-CCccC-CCCce---e--------------------------------------
Confidence 45899999999999999999998775 21111 11100 0
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
. .. +.. ....+.|+||||.. ....+...|++++|++|+++...+ .-.......
T Consensus 59 --------~--~~--~~~-~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~D~~~-~~s~~~~~~ 111 (188)
T 1zd9_A 59 --------M--RK--ITK-GNVTIKLWDIGGQP-------------RFRSMWERYCRGVSAIVYMVDAAD-QEKIEASKN 111 (188)
T ss_dssp --------E--EE--EEE-TTEEEEEEEECCSH-------------HHHTTHHHHHTTCSEEEEEEETTC-GGGHHHHHH
T ss_pred --------E--EE--EEe-CCEEEEEEECCCCH-------------hHHHHHHHHHccCCEEEEEEECCC-HHHHHHHHH
Confidence 0 00 111 23568999999943 235567789999998877665433 222222222
Q ss_pred HHHHh-C---CCCCceEEEeccCcccCc
Q 006928 195 LAREV-D---PTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 195 l~~~~-d---~~~~rti~VltK~D~~~~ 218 (625)
+...+ . ..+.++++|+||+|+.+.
T Consensus 112 ~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 112 ELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 22222 2 257899999999999764
No 104
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.21 E-value=1e-11 Score=117.58 Aligned_cols=120 Identities=22% Similarity=0.340 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.|+++|++|+|||||+++|+|..+.+.....+|..+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~---------------------------------------- 45 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKK---------------------------------------- 45 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEE----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccce----------------------------------------
Confidence 4568999999999999999999997642211111111110
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~--~~~~iIl~v~~a~~d~~~~~ 191 (625)
... +.. +...+.++||||....... ... +.+...|+. .++++++++...+ + ..
T Consensus 46 -----------~~~--~~~-~~~~~~l~Dt~G~~~~~~~----~~~---~~~~~~~~~~~~~~~~i~v~d~~~--~--~~ 100 (188)
T 2wjg_A 46 -----------EGE--FEY-NGEKFKVVDLPGVYSLTAN----SID---EIIARDYIINEKPDLVVNIVDATA--L--ER 100 (188)
T ss_dssp -----------EEE--EEE-TTEEEEEEECCCCSCCSSS----SHH---HHHHHHHHHHHCCSEEEEEEEGGG--H--HH
T ss_pred -----------EEE--EEe-CCcEEEEEECCCcCccccc----cHH---HHHHHHHHhccCCCEEEEEecchh--H--HH
Confidence 001 111 1256899999997654321 111 334555664 5887766554432 2 22
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
...+...+...+.|+++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (188)
T 2wjg_A 101 NLYLTLQLMEMGANLLLALNKMDLAKS 127 (188)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEhhhcccc
Confidence 233444444567899999999998654
No 105
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.20 E-value=4.2e-11 Score=120.94 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=74.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccccc-ccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
.-+.|+|+|.+|+|||||+|+|+|..+.+.+.. .+|+.+....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~------------------------------------ 81 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVS------------------------------------ 81 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEE------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEE------------------------------------
Confidence 457999999999999999999999886443322 2233332111
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhh--cCCCEEEEEEecCCCccccH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATS 190 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi--~~~~~iIl~v~~a~~d~~~~ 190 (625)
+.. +...++||||||+...... ...+.+.+..|+ ..+|++++++......+...
T Consensus 82 -----------------~~~-~~~~l~iiDTpG~~~~~~~------~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~ 137 (270)
T 1h65_A 82 -----------------RSR-AGFTLNIIDTPGLIEGGYI------NDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNL 137 (270)
T ss_dssp -----------------EEE-TTEEEEEEECCCSEETTEE------CHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHH
T ss_pred -----------------Eee-CCeEEEEEECCCCCCCccc------hHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHH
Confidence 111 2346999999998764321 122233445555 36888777643322234332
Q ss_pred --HHHHHHHHhCCCC--CceEEEeccCcccCcc
Q 006928 191 --DAIKLAREVDPTG--ERTFGVLTKLDLMDKG 219 (625)
Q Consensus 191 --~~l~l~~~~d~~~--~rti~VltK~D~~~~~ 219 (625)
.++..+......+ .++++|+||+|+.++.
T Consensus 138 ~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 138 DKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2333333322212 5899999999997653
No 106
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.20 E-value=5.4e-11 Score=113.13 Aligned_cols=119 Identities=19% Similarity=0.339 Sum_probs=69.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.|+|+|.+|||||||+|+|+|..+.+ ..++..|+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~~--------------------------------------- 84 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLS--------------------------------------- 84 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCce---------------------------------------
Confidence 57899999999999999999999987522 111222200
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
+ ..+ ....+.||||||....... . .......+..+|++|+++......-......
T Consensus 85 --~--~~~------------~~~~~~l~Dt~G~~~~~~~-----~----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 139 (193)
T 2ged_A 85 --A--ADY------------DGSGVTLVDFPGHVKLRYK-----L----SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTA 139 (193)
T ss_dssp ------CC------------CCTTCSEEEETTCCBSSCC-----H----HHHHHHHGGGEEEEEEEEETTCCHHHHHHHH
T ss_pred --e--eee------------cCCeEEEEECCCCchHHHH-----H----HHHHHhhcccCCEEEEEEECCCCchhHHHHH
Confidence 0 000 2367999999998654322 1 3333445566898777665441211111111
Q ss_pred HHHHHh-------CCCCCceEEEeccCcccCcc
Q 006928 194 KLAREV-------DPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 194 ~l~~~~-------d~~~~rti~VltK~D~~~~~ 219 (625)
.+...+ .+.+.|+++|+||+|+.+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 140 EFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 122111 34578999999999998654
No 107
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.19 E-value=3.5e-11 Score=113.23 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=68.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.-.+|+|+|++|+|||||+++|++..+.+. .| +
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-------~~-------t--------------------------------- 49 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTT-------KP-------T--------------------------------- 49 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEE-------CS-------S---------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCcc-------CC-------c---------------------------------
Confidence 356899999999999999999998764110 01 0
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
.++... .+.+ +...+.++||||.... ..+...|++++|++|+++. ++.........
T Consensus 50 -----~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~ 105 (183)
T 1moz_A 50 -----IGFNVE--TLSY---KNLKLNVWDLGGQTSI-------------RPYWRCYYADTAAVIFVVD-STDKDRMSTAS 105 (183)
T ss_dssp -----TTCCEE--EEEE---TTEEEEEEEEC----C-------------CTTGGGTTTTEEEEEEEEE-TTCTTTHHHHH
T ss_pred -----CccceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEE-CCCHHHHHHHH
Confidence 001111 1111 1257899999997542 2234578889998777654 43332223333
Q ss_pred HHHHHhC----CCCCceEEEeccCcccCc
Q 006928 194 KLAREVD----PTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d----~~~~rti~VltK~D~~~~ 218 (625)
.+...+. ..+.|+++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 106 KELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp HHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 3333332 357899999999999764
No 108
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.18 E-value=3.3e-11 Score=114.29 Aligned_cols=114 Identities=20% Similarity=0.204 Sum_probs=70.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.-.+|+|+|++|+|||||+|+|.+..+.+ ..| |
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-------~~~-------t--------------------------------- 53 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-------TVP-------T--------------------------------- 53 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-------ECS-------S---------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-------cCC-------C---------------------------------
Confidence 35689999999999999999998876511 111 0
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
.++... .+.+ +...+.++||||..+.. .+...|++++|++|+++.. +..-......
T Consensus 54 -----~~~~~~--~~~~---~~~~~~~~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~-~~~~s~~~~~ 109 (189)
T 2x77_A 54 -----VGVNLE--TLQY---KNISFEVWDLGGQTGVR-------------PYWRCYFSDTDAVIYVVDS-TDRDRMGVAK 109 (189)
T ss_dssp -----TTCCEE--EEEE---TTEEEEEEEECCSSSSC-------------CCCSSSSTTCCEEEEEEET-TCCTTHHHHH
T ss_pred -----CceEEE--EEEE---CCEEEEEEECCCCHhHH-------------HHHHHHhhcCCEEEEEEeC-CCHHHHHHHH
Confidence 000000 1111 13578999999965432 1234678899988776554 3322222222
Q ss_pred HHHHHh----CCCCCceEEEeccCcccCc
Q 006928 194 KLAREV----DPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~~ 218 (625)
.....+ ...+.|+++|+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 110 HELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp HHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 222222 2347899999999999765
No 109
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.18 E-value=4.5e-11 Score=114.06 Aligned_cols=119 Identities=22% Similarity=0.201 Sum_probs=70.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|.+|+|||||+|+|++..+.+ ... .|-.. ... ..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~-~t~~~-~~~--~~--------------------------------- 48 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYI-PTIED-TYR--QV--------------------------------- 48 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC-TTS-CCCCE-EEE--EE---------------------------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC-ccc-Ccccc-cee--EE---------------------------------
Confidence 35689999999999999999999876521 111 11111 000 00
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc-HH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT-SD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~-~~ 191 (625)
+ ........+.|+||||.... ..+...|++.+|++|++++..+. .+.. ..
T Consensus 49 --------------~-~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 100 (199)
T 2gf0_A 49 --------------I-SCDKSVCTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVFSVTSKQSLEELGP 100 (199)
T ss_dssp --------------E-EETTEEEEEEEEECCGGGSC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTTHH
T ss_pred --------------E-EECCEEEEEEEEeCCChHHh-------------HHHHHHhhccCCEEEEEEECcCHHHHHHHHH
Confidence 0 00111235899999995431 45667788899988776654331 1111 12
Q ss_pred HHHHHHHhCC--CCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDP--TGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~--~~~rti~VltK~D~~~~ 218 (625)
++..+..+.. .+.|+++|+||+|+.+.
T Consensus 101 ~~~~i~~~~~~~~~~piilv~nK~Dl~~~ 129 (199)
T 2gf0_A 101 IYKLIVQIKGSVEDIPVMLVGNKCDETQR 129 (199)
T ss_dssp HHHHHHHHHSCGGGSCEEEEEECTTCSSC
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccCCcc
Confidence 2333333322 36799999999999864
No 110
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.17 E-value=5e-11 Score=113.19 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=23.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
.-+|+|+|++|+|||||+++|++..|
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~ 46 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF 46 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC
Confidence 34899999999999999999998875
No 111
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.17 E-value=2.3e-10 Score=109.33 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=74.5
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
-...+|+|+|+.|+|||||++++.|. +.+.. |.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~----~~------------------------------------------ 50 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK-MSPNE----TL------------------------------------------ 50 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC-CCGGG----GG------------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc-CCCcc----ee------------------------------------------
Confidence 35779999999999999999999986 42210 00
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHH---HHhhcCCCEEEEEEecCCCcccc
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMV---RSYVEKPSCIILAISPANQDIAT 189 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v---~~yi~~~~~iIl~v~~a~~d~~~ 189 (625)
+..++...+...+.+.....+.|+||||..+.. .+. ..|++++|++|++++..+ .+..
T Consensus 51 -----~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------~~~~~~~~~~~~~~~~i~v~d~~~-~~~~ 111 (196)
T 3llu_A 51 -----FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFF-------------DPTFDYEMIFRGTGALIYVIDAQD-DYME 111 (196)
T ss_dssp -----GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTT-------------CTTCCHHHHHHTCSEEEEEEETTS-CCHH
T ss_pred -----eeccccceeeeeccCCCeeEEEEEECCCCHHHH-------------hhhhhcccccccCCEEEEEEECCC-chHH
Confidence 011222223333433445789999999954321 122 578889999887665443 3211
Q ss_pred --HHHHHHHHHh--CCCCCceEEEeccCcccCc
Q 006928 190 --SDAIKLAREV--DPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 190 --~~~l~l~~~~--d~~~~rti~VltK~D~~~~ 218 (625)
..+..++..+ ...+.++++|.||+|+.+.
T Consensus 112 ~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 112 ALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 2223344443 2347899999999998764
No 112
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.17 E-value=1.7e-10 Score=124.85 Aligned_cols=158 Identities=20% Similarity=0.286 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCC
Q 006928 5 TSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGT 84 (625)
Q Consensus 5 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~ 84 (625)
+++-.+++.+.+.+...+...... ......++|++||++|+|||||+|+|+|..+ ..++..|...+
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~-~~~~~~~kvaivG~~gvGKSTLln~l~g~~~-----~~v~~~~gtT~-------- 216 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESK-PEITDAIKVAIVGRPNVGKSTLFNAILNKER-----ALVSPIPGTTR-------- 216 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSC-CCCCSCEEEEEECSTTSSHHHHHHHHHTSTT-----EEECCCC------------
T ss_pred CCHHHHHHHHHHhcccccccchhc-cccccCceEEEECCCCCCHHHHHHHHhCCcc-----cccCCCCCCcC--------
Confidence 345556666655554332110000 0012467999999999999999999999875 22222331110
Q ss_pred cceeeccCCCCccCChHHHHHHHHHHHhhhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHH
Q 006928 85 DYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIEN 164 (625)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~ 164 (625)
+...| .+.+. ..++.+|||||+.+..... ++........
T Consensus 217 ---------------------------d~~~~----------~i~~~---g~~~~l~Dt~G~~~~~~~~-~~~~e~~~~~ 255 (439)
T 1mky_A 217 ---------------------------DPVDD----------EVFID---GRKYVFVDTAGLRRKSRVE-PRTVEKYSNY 255 (439)
T ss_dssp -----------------------------CCE----------EEEET---TEEEEESSCSCC------------CCSCCH
T ss_pred ---------------------------CceEE----------EEEEC---CEEEEEEECCCCccccccc-hhhHHHHHHH
Confidence 00001 11121 2358899999985432110 0000000001
Q ss_pred HHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 165 MVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 165 ~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.+..+++.+|.+++++ ++......++ ..++..+...+.++++|+||+|+.+..
T Consensus 256 ~~~~~i~~ad~vllv~-d~~~~~~~~~-~~i~~~l~~~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 256 RVVDSIEKADVVVIVL-DATQGITRQD-QRMAGLMERRGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp HHHHHHHHCSEEEEEE-ETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGSTTG
T ss_pred HHHHHHhhCCEEEEEE-eCCCCCCHHH-HHHHHHHHHcCCCEEEEEECccCCCch
Confidence 2346778899877654 4544444443 235555555689999999999998653
No 113
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.17 E-value=3.6e-11 Score=117.54 Aligned_cols=119 Identities=14% Similarity=0.178 Sum_probs=69.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|++|+|||||+++|++..+.+....+.+..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~------------------------------------------ 49 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVE------------------------------------------ 49 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCS------------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce------------------------------------------
Confidence 45689999999999999999999987522111100000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~-- 191 (625)
+. ...+.+ ......+.||||||.... ..+...|++.+|++|+++ +++.......
T Consensus 50 -------~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vilV~-D~~~~~s~~~~~ 105 (223)
T 3cpj_B 50 -------FA--TRTLEI-EGKRIKAQIWDTAGQERY-------------RAITSAYYRGAVGALIVY-DISKSSSYENCN 105 (223)
T ss_dssp -------EE--EEEEEE-TTEEEEEEEECCTTTTTT-------------TCCCGGGTTTCCEEEEEE-C-CCHHHHHHHH
T ss_pred -------eE--EEEEEE-CCEEEEEEEEECCCccch-------------hhhHHHHhccCCEEEEEE-eCCCHHHHHHHH
Confidence 00 001111 111246899999995432 233567889999877755 4443222222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++..+......+.++++|+||+|+.+.
T Consensus 106 ~~l~~i~~~~~~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 106 HWLSELRENADDNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp HHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 233344444557899999999999754
No 114
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.17 E-value=1.1e-10 Score=113.16 Aligned_cols=119 Identities=15% Similarity=0.202 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.|+|+|++|+|||||+++|++..+ +....+ |...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~-~~~~----------------------------------------- 42 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTS-ITDS----------------------------------------- 42 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCC-CSCE-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCC-ccee-----------------------------------------
Confidence 467999999999999999999998875 221111 1000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHH-HHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIEN-MVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~-~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
...+.+.+.....+.||||||..+ ... +...|++.+|++|+++...+..-.....
T Consensus 43 -----------~~~~~~~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 98 (214)
T 2fh5_B 43 -----------SAIYKVNNNRGNSLTLIDLPGHES-------------LRFQLLDRFKSSARAVVFVVDSAAFQREVKDV 98 (214)
T ss_dssp -----------EEEEECSSTTCCEEEEEECCCCHH-------------HHHHHHHHHGGGEEEEEEEEETTTHHHHHHHH
T ss_pred -----------eEEEEecCCCccEEEEEECCCChh-------------HHHHHHHHHHhhCCEEEEEEECCCcCHHHHHH
Confidence 000111111135689999999532 233 6778999999888766544311111122
Q ss_pred HHHH----HH--hCCCCCceEEEeccCcccCcc
Q 006928 193 IKLA----RE--VDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 193 l~l~----~~--~d~~~~rti~VltK~D~~~~~ 219 (625)
..+. .. ....+.|+++|+||+|+.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 99 AEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 2211 11 234568999999999998654
No 115
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.17 E-value=2.3e-11 Score=116.06 Aligned_cols=114 Identities=15% Similarity=0.246 Sum_probs=68.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
.-.+|+|+|++|+|||||+++|++..+ +. ..| +.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~-~~------~~~------t~--------------------------------- 61 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEI-VT------TIP------TI--------------------------------- 61 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCC-EE------EEE------ET---------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCc-cc------cCC------cC---------------------------------
Confidence 346899999999999999999998765 21 112 00
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
| +... . +.. ....+.|+||||.... ..+...|++++|++|++++ ++.........
T Consensus 62 --~----~~~~--~--~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D-~~~~~s~~~~~ 116 (192)
T 2b6h_A 62 --G----FNVE--T--VEY-KNICFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVD-SNDRERVQESA 116 (192)
T ss_dssp --T----EEEE--E--EEE-TTEEEEEEECC------------------CTTHHHHHHTCCEEEEEEE-TTCGGGHHHHH
T ss_pred --c----eeEE--E--EEE-CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEE-CCCHHHHHHHH
Confidence 0 0000 0 111 2357899999996432 3346678899998877654 44332222222
Q ss_pred HHHHHh----CCCCCceEEEeccCcccCc
Q 006928 194 KLAREV----DPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~~ 218 (625)
.+...+ ...+.|+++|+||+|+.+.
T Consensus 117 ~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 117 DELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 333322 2247899999999999764
No 116
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.16 E-value=2.4e-10 Score=120.13 Aligned_cols=126 Identities=19% Similarity=0.240 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.|+++|.+|+|||||+|+|+|..+...+....|+.+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~------------------------------------- 208 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQ------------------------------------- 208 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEE-------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEE-------------------------------------
Confidence 6789999999999999999999998631111112232221110
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC---ccccH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ---DIATS 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~---d~~~~ 190 (625)
+.. ....+.++||||+....... ...+. ...+..+...+|.++++++..+. ++...
T Consensus 209 ----------------~~~-~~~~~~l~Dt~G~~~~~~~~-~~~~~---~~~~~~~~~~ad~illV~D~s~~~~~~~~~~ 267 (357)
T 2e87_A 209 ----------------FED-GYFRYQIIDTPGLLDRPISE-RNEIE---KQAILALRYLGNLIIYIFDPSEHCGFPLEEQ 267 (357)
T ss_dssp ----------------EEE-TTEEEEEEECTTTSSSCSTT-SCHHH---HHHHHGGGGTCSEEEEEECTTCTTSSCHHHH
T ss_pred ----------------EEe-cCceEEEEeCCCccccchhh-hhHHH---HHHHHHHHhcCCEEEEEEeCCccccCCHHHH
Confidence 111 12468999999987643221 11111 23334555678987776543332 22221
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 -DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 -~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++..+....+ +.++++|+||+|+.+.
T Consensus 268 ~~~~~~i~~~~~-~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 268 IHLFEEVHGEFK-DLPFLVVINKIDVADE 295 (357)
T ss_dssp HHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred HHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence 23333333333 7899999999999764
No 117
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.16 E-value=2.4e-10 Score=114.79 Aligned_cols=125 Identities=16% Similarity=0.209 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccc-cccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
+-..|+|+|..|+|||||+|+|+|.++.+.+. ..+|..+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~------------------------------------ 78 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVS------------------------------------ 78 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEE------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEE------------------------------------
Confidence 45689999999999999999999987532222 11222221111
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATS 190 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~--~~~~iIl~v~~a~~d~~~~ 190 (625)
+.. +...++||||||..+.... .+...+.+.+++. .+|++++++......+...
T Consensus 79 -----------------~~~-~~~~l~liDTpG~~~~~~~------~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~ 134 (262)
T 3def_A 79 -----------------RTM-GGFTINIIDTPGLVEAGYV------NHQALELIKGFLVNRTIDVLLYVDRLDVYAVDEL 134 (262)
T ss_dssp -----------------EEE-TTEEEEEEECCCSEETTEE------CHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHH
T ss_pred -----------------EEE-CCeeEEEEECCCCCCcccc------hHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHH
Confidence 111 2247899999998764322 2333445556663 5677666432222234333
Q ss_pred --HHHHHHHHhCCC--CCceEEEeccCcccCc
Q 006928 191 --DAIKLAREVDPT--GERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 --~~l~l~~~~d~~--~~rti~VltK~D~~~~ 218 (625)
.+++.++..... ..++++|+||+|+.+.
T Consensus 135 ~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 135 DKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 344444443222 2489999999999744
No 118
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.16 E-value=5.5e-11 Score=112.08 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=71.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|.+|+|||||+|+|++..+ . . ..| +
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~-~-----~~~-------t--------------------------------- 52 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV-V-H-----TSP-------T--------------------------------- 52 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC-E-E-----EEC-------C---------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-C-c-----cCC-------c---------------------------------
Confidence 566899999999999999999999875 1 0 001 1
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
.++... .+.+ +...+.|+||||..+. ..+...|++++|++|++++ ++.........
T Consensus 53 -----~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D-~~~~~s~~~~~ 108 (181)
T 2h17_A 53 -----IGSNVE--EIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVD-STDRERISVTR 108 (181)
T ss_dssp -----SSSSCE--EEEE---TTEEEEEEEESSSGGG-------------TCGGGGGGTTCCEEEEEEE-TTCTTTHHHHH
T ss_pred -----CceeeE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEE-CCCHHHHHHHH
Confidence 001111 1112 2367899999996432 2345678899998877655 44332223332
Q ss_pred HHHHHh-C---CCCCceEEEeccCcccCc
Q 006928 194 KLAREV-D---PTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~-d---~~~~rti~VltK~D~~~~ 218 (625)
.+...+ . ..+.++++|+||+|+.+.
T Consensus 109 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 109 EELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 222222 2 357899999999999764
No 119
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.16 E-value=8.5e-11 Score=112.50 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=42.9
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc-HHHHHHHHHhCC-CCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT-SDAIKLAREVDP-TGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~-~~~l~l~~~~d~-~~~rti~VltK 212 (625)
..+.++||||.... . ..+...|++.+|++|++++..+.. +.. ..++..+....+ .+.|+++|.||
T Consensus 72 ~~l~i~Dt~g~~~~---------~---~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 139 (195)
T 3cbq_A 72 VTLVVYDIWEQGDA---------G---GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 139 (195)
T ss_dssp EEEEEECCCCCSGG---------G---HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEEecCCCccc---------h---hhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeec
Confidence 35789999996431 0 225567888899887766543311 111 122222232222 47899999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+.+.
T Consensus 140 ~Dl~~~ 145 (195)
T 3cbq_A 140 SDLARS 145 (195)
T ss_dssp TTCTTT
T ss_pred hhcccc
Confidence 999764
No 120
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.15 E-value=2.3e-11 Score=127.53 Aligned_cols=122 Identities=19% Similarity=0.196 Sum_probs=77.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..++|++||.||+|||||+|+|+|.+....+...||+-|..-.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~------------------------------------ 114 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVI------------------------------------ 114 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEE------------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEE------------------------------------
Confidence 46799999999999999999999987655555568888743221
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
.. ....++|+||||++..+..+ . ..-+.+.+.++++|.|++ |++++.+....+.+
T Consensus 115 -----------------~~-~~~~i~l~D~pGl~~~a~~~--~----~~g~~~l~~i~~ad~il~-vvD~~~p~~~~~~i 169 (376)
T 4a9a_A 115 -----------------RY-KGAKIQMLDLPGIIDGAKDG--R----GRGKQVIAVARTCNLLFI-ILDVNKPLHHKQII 169 (376)
T ss_dssp -----------------EE-TTEEEEEEECGGGCCC-----------CHHHHHHHHHHHCSEEEE-EEETTSHHHHHHHH
T ss_pred -----------------Ee-CCcEEEEEeCCCccCCchhh--h----HHHHHHHHHHHhcCcccc-ccccCccHHHHHHH
Confidence 11 12468999999998765432 1 122345567788997655 55666544333222
Q ss_pred H-HHHHhCC--CCCceEEEeccCccc
Q 006928 194 K-LAREVDP--TGERTFGVLTKLDLM 216 (625)
Q Consensus 194 ~-l~~~~d~--~~~rti~VltK~D~~ 216 (625)
. .+..++. ...|.++|+||.|.-
T Consensus 170 ~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 170 EKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHhhHhhccCChhhhhhHhhhh
Confidence 1 1222221 356789999999963
No 121
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.15 E-value=7.4e-11 Score=113.00 Aligned_cols=117 Identities=18% Similarity=0.154 Sum_probs=67.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|.+|+|||||+++|++..+ +.....++.......
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 60 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAV------------------------------------- 60 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEE-------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEE-------------------------------------
Confidence 466899999999999999999999874 322222221110000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~-- 191 (625)
+.+ ......+.|+||||..... .+...|++++|++|+++...+ ......
T Consensus 61 --------------~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~ 111 (201)
T 2q3h_A 61 --------------VSV-DGRPVRLQLCDTAGQDEFD-------------KLRPLCYTNTDIFLLCFSVVS-PSSFQNVS 111 (201)
T ss_dssp --------------EEE-TTEEEEEEEEECCCSTTCS-------------SSGGGGGTTCSEEEEEEETTC-HHHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEECCCCHHHH-------------HHhHhhcCCCcEEEEEEECCC-HHHHHHHH
Confidence 001 0111357899999975432 224568899998877665433 222222
Q ss_pred --HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 --AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 --~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++..++...+ +.|+++|+||+|+.+.
T Consensus 112 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 112 EKWVPEIRCHCP-KAPIILVGTQSDLRED 139 (201)
T ss_dssp HTHHHHHHHHCS-SSCEEEEEECGGGGGC
T ss_pred HHHHHHHHHhCC-CCCEEEEEECHhhhhc
Confidence 2223343333 7899999999999864
No 122
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.15 E-value=3.7e-11 Score=114.29 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=44.9
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc----ccc-HHHHHHHHHh--CCCCCceEE
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD----IAT-SDAIKLAREV--DPTGERTFG 208 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d----~~~-~~~l~l~~~~--d~~~~rti~ 208 (625)
..+.|+||||.... ..+...|++++|++|+++...... ... .....+..++ ...+.|+++
T Consensus 74 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piil 140 (198)
T 3t1o_A 74 TRFHLYTVPGQVFY-------------NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVI 140 (198)
T ss_dssp EEEEEEECCSCCSC-------------SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEE
T ss_pred eEEEEEeCCChHHH-------------HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 35899999995432 345677999999888766544210 111 1122234444 335789999
Q ss_pred EeccCcccCc
Q 006928 209 VLTKLDLMDK 218 (625)
Q Consensus 209 VltK~D~~~~ 218 (625)
|+||+|+.+.
T Consensus 141 v~NK~Dl~~~ 150 (198)
T 3t1o_A 141 QVNKRDLPDA 150 (198)
T ss_dssp EEECTTSTTC
T ss_pred EEEchhcccc
Confidence 9999999764
No 123
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.15 E-value=4.7e-12 Score=121.46 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=66.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|.+|+|||||+|+|++..+........|....
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 71 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFK---------------------------------------- 71 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEE----------------------------------------
Confidence 3568999999999999999999998752211111111110
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~-- 191 (625)
...+.+ ......+.|+||||..... .+...|++++|++|+++ +++.......
T Consensus 72 -----------~~~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~ 125 (199)
T 3l0i_B 72 -----------IRTIEL-DGKTIKLQIWDTAGQERFR-------------TITSSYYRGAHGIIVVY-DVTDQESFNNVK 125 (199)
T ss_dssp -----------EEEEEE-TTEEEEEEEECCTTCTTCC-------------CCSCC--CCCSEEEECC--CCCSHHHHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCcHhHH-------------HHHHHHhhcCCEEEEEE-ECCCHHHHHHHH
Confidence 000111 1111368999999954322 22456888999877755 4443222222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++..+....+.+.++++|+||+|+.+.
T Consensus 126 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 126 QWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp HHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 223334444457899999999999754
No 124
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.15 E-value=1.7e-10 Score=108.89 Aligned_cols=115 Identities=21% Similarity=0.285 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.|+++|++|+|||||+++|++..+ + . -.| +
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~----~--~~~-------t--------------------------------- 47 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-S----H--ITP-------T--------------------------------- 47 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-E----E--EEE-------E---------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-C----c--ccC-------c---------------------------------
Confidence 467999999999999999999998754 1 0 011 1
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
.| +... .+.+ +...+.++||||... +..+...|++.+|++|++++..+ ........
T Consensus 48 -~g----~~~~--~~~~---~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~ 103 (181)
T 1fzq_A 48 -QG----FNIK--SVQS---QGFKLNVWDIGGQRK-------------IRPYWRSYFENTDILIYVIDSAD-RKRFEETG 103 (181)
T ss_dssp -TT----EEEE--EEEE---TTEEEEEEECSSCGG-------------GHHHHHHHHTTCSEEEEEEETTC-GGGHHHHH
T ss_pred -CC----eEEE--EEEE---CCEEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECcC-HHHHHHHH
Confidence 00 1000 1111 135689999999532 24567789999999888665433 22222222
Q ss_pred HHHHHh----CCCCCceEEEeccCcccCcc
Q 006928 194 KLAREV----DPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~~~ 219 (625)
.+...+ ...+.|+++|+||+|+.+..
T Consensus 104 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 104 QELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp HHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred HHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 232322 23578999999999997653
No 125
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.15 E-value=4.7e-11 Score=112.41 Aligned_cols=117 Identities=21% Similarity=0.188 Sum_probs=71.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
-.+|+|+|.+|+|||||+++|++..+ +......+.......
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~-------------------------------------- 45 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSAN-------------------------------------- 45 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEE--------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEE--------------------------------------
Confidence 45899999999999999999998765 222111111110000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccH--H
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATS--D 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~~--~ 191 (625)
+.+ ......+.|+||||.... ..+...|++.+|++|+++...+.. +... .
T Consensus 46 -------------~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 98 (186)
T 1mh1_A 46 -------------VMV-DGKPVNLGLWDTAGQEDY-------------DRLRPLSYPQTDVSLICFSLVSPASFENVRAK 98 (186)
T ss_dssp -------------EEE-TTEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHT
T ss_pred -------------EEE-CCEEEEEEEEECCCCHhH-------------HHHHHHhccCCcEEEEEEECCChhhHHHHHHH
Confidence 001 111235789999997532 233456889999887766543321 1111 1
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++..++...+ +.|+++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~-~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 99 WYPEVRHHCP-NTPIILVGTKLDLRDD 124 (186)
T ss_dssp HHHHHHHHST-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHhCC-CCCEEEEeEccccccc
Confidence 3334444444 7899999999999865
No 126
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.13 E-value=3e-11 Score=117.33 Aligned_cols=117 Identities=17% Similarity=0.182 Sum_probs=58.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
-..|+|+|++|+|||||+++|++..+ +.....++.....
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 72 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYM---------------------------------------- 72 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEE----------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEE----------------------------------------
Confidence 34899999999999999999999865 3221111111000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH----
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---- 190 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---- 190 (625)
..+.+. .....+.|+||||... ...+...|++++|++|+++...+ .....
T Consensus 73 -----------~~~~~~-~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~ 126 (214)
T 2j1l_A 73 -----------VNLQVK-GKPVHLHIWDTAGQDD-------------YDRLRPLFYPDASVLLLCFDVTS-PNSFDNIFN 126 (214)
T ss_dssp -----------EEEEET-TEEEEEEEEEC----------------------------CEEEEEEEEETTC-HHHHHHHHH
T ss_pred -----------EEEEEC-CEEEEEEEEECCCchh-------------hhHHHHHHhccCCEEEEEEECcC-HHHHHHHHH
Confidence 000010 1123589999999432 24556678899998877664433 22111
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.++..++... .+.|+++|+||+|+.+..
T Consensus 127 ~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 127 RWYPEVNHFC-KKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp THHHHHHHHC-SSCCEEEEEECGGGGSCH
T ss_pred HHHHHHHHhC-CCCCEEEEEEChhhhccc
Confidence 1233333333 368999999999998653
No 127
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.13 E-value=4.7e-11 Score=114.71 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=69.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
..|+|+|.+|+|||||+++|++..+ +....+.+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~------------------------------------------- 61 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFEN------------------------------------------- 61 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCC-------------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccce-------------------------------------------
Confidence 4799999999999999999999875 32211111000
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc--HHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT--SDA 192 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~--~~~ 192 (625)
+. ..+.+ ......+.|+||||.... ..+...|++++|++|++++..+. .+.. ..+
T Consensus 62 -----~~---~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 119 (201)
T 2gco_A 62 -----YI---ADIEV-DGKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW 119 (201)
T ss_dssp -----CE---EEEEE-TTEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTH
T ss_pred -----EE---EEEEE-CCEEEEEEEEECCCchhH-------------HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 00111 111246899999995432 23345688999988776543331 1111 123
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
...++...+ +.|+++|+||+|+.+.
T Consensus 120 ~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 120 TPEVKHFCP-NVPIILVGNKKDLRQD 144 (201)
T ss_dssp HHHHHHHST-TCCEEEEEECGGGTTC
T ss_pred HHHHHHhCC-CCCEEEEEecHHhhcC
Confidence 334444333 6899999999999865
No 128
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.12 E-value=3.7e-11 Score=115.98 Aligned_cols=116 Identities=19% Similarity=0.244 Sum_probs=68.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhh
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (625)
..|+|+|.+|+|||||+|+|++..+ +....+.+.....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~----------------------------------------- 63 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEF-PEVYVPTVFENYV----------------------------------------- 63 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-C-------CCEEE-----------------------------------------
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCC-CCcCCCcccceEE-----------------------------------------
Confidence 4899999999999999999999875 2111111100000
Q ss_pred CCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-ccc--HHH
Q 006928 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--SDA 192 (625)
Q Consensus 116 g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~--~~~ 192 (625)
..+.+ ......+.|+||||.... ..+...|++++|++|+++...+.. +.. ..+
T Consensus 64 ----------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 119 (207)
T 2fv8_A 64 ----------ADIEV-DGKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKW 119 (207)
T ss_dssp ----------EEEEE-TTEEEEEEEEECTTCTTC-------------TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTH
T ss_pred ----------EEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00111 111246899999995432 233456889999887766543321 111 122
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
+..++...+ +.|+++|+||+|+.+.
T Consensus 120 ~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 120 VPEVKHFCP-NVPIILVANKKDLRSD 144 (207)
T ss_dssp HHHHHHHST-TCCEEEEEECGGGGGC
T ss_pred HHHHHHhCC-CCCEEEEEEchhhhcc
Confidence 333443333 6899999999999765
No 129
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.12 E-value=9.2e-11 Score=112.52 Aligned_cols=113 Identities=15% Similarity=0.224 Sum_probs=67.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+++|++|+|||||+++|++..+ +. -..|..+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~--~~~t~~~----------------------------------------- 59 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRL-GQ--HVPTLHP----------------------------------------- 59 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCCCC-----------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC-Cc--cCCCCCc-----------------------------------------
Confidence 456899999999999999999998764 10 0011111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
. .-.+.+ . ...+.++||||.... +.+...|++.+|++|++++..+. -......
T Consensus 60 --------~--~~~~~~--~-~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~-~s~~~~~ 112 (198)
T 1f6b_A 60 --------T--SEELTI--A-GMTFTTFDLGGHIQA-------------RRVWKNYLPAINGIVFLVDCADH-ERLLESK 112 (198)
T ss_dssp --------S--CEEEEE--T-TEEEEEEEECC-----------------CCGGGGGGGGCSEEEEEEETTCG-GGHHHHH
T ss_pred --------e--eEEEEE--C-CEEEEEEECCCcHhh-------------HHHHHHHHhcCCEEEEEEECCCH-HHHHHHH
Confidence 0 011112 1 257899999994331 23456788999988876654432 2222222
Q ss_pred HHHHHh----CCCCCceEEEeccCcccC
Q 006928 194 KLAREV----DPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~ 217 (625)
.+...+ ...+.|+++|+||+|+..
T Consensus 113 ~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 113 EELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp HHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 222222 235789999999999975
No 130
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.12 E-value=4.1e-11 Score=114.25 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|.+|+|||||+++|++..+ +......+.......
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 63 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHV------------------------------------- 63 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEE-------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEE-------------------------------------
Confidence 345899999999999999999999875 322211111110000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--- 190 (625)
+.+ ......+.|+||||.... ..+...|++++|++|+++...+ .....
T Consensus 64 --------------~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 114 (194)
T 3reg_A 64 --------------MKY-KNEEFILHLWDTAGQEEY-------------DRLRPLSYADSDVVLLCFAVNN-RTSFDNIS 114 (194)
T ss_dssp --------------EEE-TTEEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTC-HHHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEECCCcHHH-------------HHHhHhhccCCcEEEEEEECCC-HHHHHHHH
Confidence 000 111235799999994322 3445678899998887665433 22111
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 -DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 -~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+...++... .+.|+++|+||+|+.+.
T Consensus 115 ~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 115 TKWEPEIKHYI-DTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp HTHHHHHHHHC-TTSEEEEEEECGGGCCT
T ss_pred HHHHHHHHHhC-CCCCEEEEEEChhhccC
Confidence 2233333333 36899999999999864
No 131
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.12 E-value=2.6e-10 Score=108.51 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=69.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+-..|+++|++|+|||||+++|++..+ +. -..|..+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~-~~--~~~t~~~~~--------------------------------------- 59 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRL-AT--LQPTWHPTS--------------------------------------- 59 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCC-CC--CCCCCSCEE---------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC-Cc--cccCCCCCe---------------------------------------
Confidence 455899999999999999999998765 21 111211110
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
-. +... ...+.++||||.... +.+...|++++|++|+++...+ .-.-....
T Consensus 60 ------------~~--~~~~-~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 110 (190)
T 1m2o_B 60 ------------EE--LAIG-NIKFTTFDLGGHIQA-------------RRLWKDYFPEVNGIVFLVDAAD-PERFDEAR 110 (190)
T ss_dssp ------------EE--EEET-TEEEEEEECCCSGGG-------------TTSGGGGCTTCCEEEEEEETTC-GGGHHHHH
T ss_pred ------------EE--EEEC-CEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCC-hHHHHHHH
Confidence 01 1111 256899999996542 2235678899998887665443 22222222
Q ss_pred HHHHHh----CCCCCceEEEeccCcccC
Q 006928 194 KLAREV----DPTGERTFGVLTKLDLMD 217 (625)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~ 217 (625)
.+...+ ...+.|+++|+||+|+.+
T Consensus 111 ~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 111 VELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp HHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 222222 235789999999999976
No 132
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.12 E-value=7.9e-11 Score=112.15 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=71.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
...|+|+|++|+|||||+++|++..+ +.....++......
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~--------------------------------------- 57 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAV--------------------------------------- 57 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEE---------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEE---------------------------------------
Confidence 45899999999999999999998864 32222111111000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccH--H
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATS--D 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~~--~ 191 (625)
.+.+ ......+.|+||||..+. ..+...|++++|++|+++...+.. +... .
T Consensus 58 ------------~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 111 (194)
T 2atx_A 58 ------------SVTV-GGKQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKEE 111 (194)
T ss_dssp ------------EEES-SSCEEEEEEECCCCSSSS-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHT
T ss_pred ------------EEEE-CCEEEEEEEEECCCCcch-------------hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHH
Confidence 0000 011246889999996542 233567889999887766543321 1111 2
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
++..++...+ +.|+++|+||+|+.+.
T Consensus 112 ~~~~~~~~~~-~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 112 WVPELKEYAP-NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp HHHHHHHHST-TCCEEEEEECTTSTTC
T ss_pred HHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 3333444333 6899999999999865
No 133
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.12 E-value=1.3e-11 Score=131.24 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEE
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 74 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~ 74 (625)
+|++||.+|+|||||+|+|+|..........||+.|+.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~ 39 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANV 39 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCce
Confidence 68999999999999999999987322222346666643
No 134
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.11 E-value=1.4e-10 Score=119.34 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=46.0
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---HHHHHHHhC--CCCCceEEE
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIKLAREVD--PTGERTFGV 209 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~---~l~l~~~~d--~~~~rti~V 209 (625)
...+.||||||..+. .......+...|++++|++|++++..+. ....+ +..++..+. ..+.|+++|
T Consensus 51 ~~~l~i~Dt~G~~~~--------~~~~~~~~~~~~~~~ad~vi~V~D~t~~-~s~~~l~~~~~~l~~l~~~~~~~piilv 121 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVF--------MENYFTKQKDHIFQMVQVLIHVFDVEST-EVLKDIEIFAKALKQLRKYSPDAKIFVL 121 (307)
T ss_dssp TEEEEEEEECCSHHH--------HHHHHTTTHHHHHTTCSEEEEEEETTCS-CHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEEECCCcHHH--------hhhhhhhHHHHHhccCCEEEEEEECCCh-hhHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 457899999995421 1112245677888999988776654432 22121 122222221 236899999
Q ss_pred eccCcccC
Q 006928 210 LTKLDLMD 217 (625)
Q Consensus 210 ltK~D~~~ 217 (625)
+||+|+.+
T Consensus 122 ~NK~Dl~~ 129 (307)
T 3r7w_A 122 LHKMDLVQ 129 (307)
T ss_dssp EECGGGSC
T ss_pred Eecccccc
Confidence 99999986
No 135
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.11 E-value=2.8e-11 Score=118.00 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=43.8
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc---HHHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~---~~~l~l~~~~d~~~~rti~VltK 212 (625)
..+.|+||||.... ..+...|++++|++|+++...+ .... ..++..+.... .+.++++|+||
T Consensus 64 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK 128 (221)
T 3gj0_A 64 IKFNVWDTAGQEKF-------------GGLRDGYYIQAQCAIIMFDVTS-RVTYKNVPNWHRDLVRVC-ENIPIVLCGNK 128 (221)
T ss_dssp EEEEEEEECSGGGT-------------SCCCHHHHTTCCEEEEEEETTC-HHHHHTHHHHHHHHHHHS-TTCCEEEEEEC
T ss_pred EEEEEEeCCChHHH-------------hHHHHHHHhcCCEEEEEEECCC-HHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 46899999995432 2234578889998877664433 2221 12333333333 26899999999
Q ss_pred CcccCcc
Q 006928 213 LDLMDKG 219 (625)
Q Consensus 213 ~D~~~~~ 219 (625)
+|+.+..
T Consensus 129 ~Dl~~~~ 135 (221)
T 3gj0_A 129 VDIKDRK 135 (221)
T ss_dssp TTSSSCS
T ss_pred Ccccccc
Confidence 9997653
No 136
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.10 E-value=1.5e-10 Score=108.48 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
-..|+|+|++|+|||||++++++..+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 34799999999999999999999876
No 137
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.09 E-value=3.1e-10 Score=110.20 Aligned_cols=115 Identities=22% Similarity=0.369 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..|.|+|+|++|+|||||+++|++..+.+ ...+..|+... +
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~---~~~~~~~~~~~----------------------~-------------- 51 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLSAA----------------------D-------------- 51 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCC---BCCCSSCEEET----------------------T--------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC---eeeecCceEEE----------------------E--------------
Confidence 67899999999999999999999987522 11223331110 0
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcC----CCEEEEEEecCCCcccc
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK----PSCIILAISPANQDIAT 189 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~----~~~iIl~v~~a~~d~~~ 189 (625)
. ....+.++||||.... +.++..|+.. +|++|++++.....-..
T Consensus 52 ~-------------------~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~ 99 (218)
T 1nrj_B 52 Y-------------------DGSGVTLVDFPGHVKL-------------RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKL 99 (218)
T ss_dssp G-------------------GGSSCEEEECCCCGGG-------------THHHHHHHHHHGGGEEEEEEEEETTSCTTCC
T ss_pred e-------------------eCceEEEEECCCcHHH-------------HHHHHHHHHhccccCCEEEEEEECCCChHHH
Confidence 0 2257999999997542 2334455544 88877766544111111
Q ss_pred HHHHHHHHHh-------CCCCCceEEEeccCcccCcc
Q 006928 190 SDAIKLAREV-------DPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 190 ~~~l~l~~~~-------d~~~~rti~VltK~D~~~~~ 219 (625)
.....+...+ .+.+.|+++|+||+|+....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 100 TTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 2221222221 34678999999999998654
No 138
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.68 E-value=9.9e-12 Score=119.62 Aligned_cols=69 Identities=25% Similarity=0.232 Sum_probs=43.3
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH-HHHHHhCCC--CCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI-KLAREVDPT--GERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l-~l~~~~d~~--~~rti~VltK 212 (625)
..+.|+||||..+ ...+...|++++|++|++++..+ ........ .+...+... +.|+++|+||
T Consensus 78 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~-~~s~~~~~~~~~~~l~~~~~~~piilv~NK 143 (204)
T 3th5_A 78 VNLGLWDTAGQED-------------YDRLRPLSYPQTDVFLICFSLVS-PASFENVRAKWYPEVRHHCPNTPIILVGTK 143 (204)
Confidence 4578999999532 24556678899998877654332 22222221 222333222 6899999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+.+.
T Consensus 144 ~Dl~~~ 149 (204)
T 3th5_A 144 LDLRDD 149 (204)
Confidence 999764
No 139
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.08 E-value=4.9e-11 Score=112.01 Aligned_cols=117 Identities=26% Similarity=0.304 Sum_probs=67.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...+|+|+|++|+|||||++++++..+ +... .|+.-.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~-----~~t~~~------------------------------------- 43 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDY-----VPTVFD------------------------------------- 43 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C---------------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCC-----CCeeee-------------------------------------
Confidence 356899999999999999999998764 2211 111000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--- 190 (625)
.+... + .+ ......+.|+||||.... ..+...|++++|++|+++...+ .....
T Consensus 44 ------~~~~~-~--~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 99 (182)
T 3bwd_D 44 ------NFSAN-V--VV-NGATVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLIS-KASYENVS 99 (182)
T ss_dssp -------CBCC-C--C--------CEEECCCC-CTT-------------TTTGGGGGTTCSEEEEEEETTC-HHHHHHHH
T ss_pred ------eEEEE-E--EE-CCEEEEEEEEECCCChhh-------------hhhHHhhccCCCEEEEEEECCC-HHHHHHHH
Confidence 00000 0 00 112246789999995432 2345678899998877665433 22111
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 -DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 -~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 100 KKWIPELKHYAP-GVPIVLVGTKLDLRDD 127 (182)
T ss_dssp HTHHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHHhCC-CCCEEEEEechhhhcC
Confidence 23334444443 7899999999999764
No 140
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.08 E-value=8.6e-11 Score=113.62 Aligned_cols=116 Identities=22% Similarity=0.231 Sum_probs=70.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
...|+|+|++|+|||||+++|++..+ +....+++......
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~--------------------------------------- 48 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSA--------------------------------------- 48 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEE---------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEE---------------------------------------
Confidence 45899999999999999999998765 32221111111000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH----
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---- 190 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---- 190 (625)
.+.+ ......+.|+||||.... ..+...|++++|++|++++..+ .....
T Consensus 49 ------------~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~-~~s~~~~~~ 101 (212)
T 2j0v_A 49 ------------NVAV-DGQIVNLGLWDTAGQEDY-------------SRLRPLSYRGADIFVLAFSLIS-KASYENVLK 101 (212)
T ss_dssp ------------EEEC-SSCEEEEEEECCCCCCCC-------------CC--CGGGTTCSEEEEEEETTC-HHHHHHHHH
T ss_pred ------------EEEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhccCCCEEEEEEECCC-HHHHHHHHH
Confidence 0001 111246899999996542 2234568899998887665433 21111
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 102 KWMPELRRFAP-NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp THHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHhCC-CCCEEEEEeCHHhhhC
Confidence 23334444444 7899999999999764
No 141
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.07 E-value=1.2e-10 Score=113.45 Aligned_cols=71 Identities=23% Similarity=0.309 Sum_probs=46.9
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC-cccc-HHHHHHHHHhCCCCCceEEEeccC
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT-SDAIKLAREVDPTGERTFGVLTKL 213 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~-d~~~-~~~l~l~~~~d~~~~rti~VltK~ 213 (625)
..+.||||+|-.+ ...+...|++.++++|++.+-.+. .+.+ ..++..++...+...++++|.||+
T Consensus 62 v~l~iwDtaGqe~-------------~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~ 128 (216)
T 4dkx_A 62 IRLQLWDTAGLER-------------FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128 (216)
T ss_dssp EEEEEECCSCTTT-------------CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECT
T ss_pred EEEEEEECCCchh-------------hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeecc
Confidence 4678999999432 245678899999988876554332 1111 234444444445578999999999
Q ss_pred cccCcc
Q 006928 214 DLMDKG 219 (625)
Q Consensus 214 D~~~~~ 219 (625)
|+.+..
T Consensus 129 Dl~~~r 134 (216)
T 4dkx_A 129 DLADKR 134 (216)
T ss_dssp TCGGGC
T ss_pred chHhcC
Confidence 987643
No 142
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.07 E-value=2.2e-10 Score=118.96 Aligned_cols=112 Identities=20% Similarity=0.237 Sum_probs=67.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g 116 (625)
+|+|+|.+|+|||||+++|++..+ +.. ..|......
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~-~~~--~pT~~~~~~----------------------------------------- 202 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFNVE----------------------------------------- 202 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC-EEE--EEETTEEEE-----------------------------------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCC-CCc--ccccceEEE-----------------------------------------
Confidence 799999999999999999999875 111 111111000
Q ss_pred CCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH-H
Q 006928 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK-L 195 (625)
Q Consensus 117 ~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~-l 195 (625)
. +.. ....++|+||||-.. +..+...|++.+|++|+++...+. -....... +
T Consensus 203 ----------~--~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~vilV~D~~~~-~s~~~~~~~~ 255 (329)
T 3o47_A 203 ----------T--VEY-KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDR-ERVNEAREEL 255 (329)
T ss_dssp ----------E--EEE-TTEEEEEEECC------------------CCSHHHHHTTEEEEEEEEETTCS-SSHHHHHHHH
T ss_pred ----------E--Eec-CcEEEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEECCch-HHHHHHHHHH
Confidence 0 111 225689999999322 234567889999988776654332 22222211 2
Q ss_pred HHHhC---CCCCceEEEeccCcccCcc
Q 006928 196 AREVD---PTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 196 ~~~~d---~~~~rti~VltK~D~~~~~ 219 (625)
...+. ..+.|+|+|+||+|+.+..
T Consensus 256 ~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 256 MRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHhhhccCCCeEEEEEECccCCccc
Confidence 22222 2478999999999998653
No 143
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.07 E-value=7e-11 Score=113.85 Aligned_cols=118 Identities=21% Similarity=0.179 Sum_probs=70.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+-.+|+|+|.+|+|||||++++++..+ +......+.......
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 70 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSAN------------------------------------- 70 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEE-------------------------------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEE-------------------------------------
Confidence 345899999999999999999998765 222111111110000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--- 190 (625)
+.+ ......+.|+||||.... ..+...|++++|++|+++...+ .....
T Consensus 71 --------------~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 121 (204)
T 4gzl_A 71 --------------VMV-DGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVS-PASFENVR 121 (204)
T ss_dssp --------------EEC-C-CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTC-HHHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEECCC-HHHHHHHH
Confidence 000 011235679999996432 2345668899998887664433 22221
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 191 -DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 191 -~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.++..++... .+.|+++|+||+|+.+..
T Consensus 122 ~~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 122 AKWYPEVRHHC-PNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp HTHHHHHHHHC-SSCCEEEEEECHHHHTCH
T ss_pred HHHHHHHHHhC-CCCCEEEEEechhhccch
Confidence 1233334333 368999999999998654
No 144
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.06 E-value=7e-11 Score=114.84 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+|+|++|+|||||+++|++..+ +....+.+.....
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 65 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYT--------------------------------------- 65 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEE---------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeEE---------------------------------------
Confidence 456899999999999999999999875 2221111110000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc----
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---- 189 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~---- 189 (625)
..+.+ ......+.|+||||.... ..+...|++++|++|++++..+. ...
T Consensus 66 ------------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~ 118 (214)
T 3q3j_B 66 ------------ACLET-EEQRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRP-ETVDSAL 118 (214)
T ss_dssp ------------EEEEC---CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCT-HHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCHhH-------------HHHHHHHcCCCeEEEEEEECcCH-HHHHHHH
Confidence 00001 111246889999995432 33456788999988886654432 221
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 190 SDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
..++..++...+ +.|+++|.||+|+.+.
T Consensus 119 ~~~~~~i~~~~~-~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 119 KKWRTEILDYCP-STRVLLIGCKTDLRTD 146 (214)
T ss_dssp THHHHHHHHHCT-TSEEEEEEECGGGGGC
T ss_pred HHHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 233444444443 6899999999999764
No 145
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.05 E-value=2.2e-10 Score=108.53 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=24.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
.--+|+|+|++|+|||||++++++..|
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445899999999999999999998875
No 146
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.05 E-value=1.6e-10 Score=109.20 Aligned_cols=116 Identities=18% Similarity=0.179 Sum_probs=69.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
..+|+|+|++|+|||||+++|++..+ +.... .|.......
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~-~t~~~~~~~-------------------------------------- 46 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFENYTA-------------------------------------- 46 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC-CCSEEEEEE--------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-CccceeEEE--------------------------------------
Confidence 45899999999999999999999875 32211 111110000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH---
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--- 191 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~--- 191 (625)
.+.+ ......+.|+||||.... ..+...|++.+|++|+++...+ ......
T Consensus 47 ------------~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~ 99 (184)
T 1m7b_A 47 ------------SFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISR-PETLDSVLK 99 (184)
T ss_dssp ------------EEEC-SSCEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTC-HHHHHHHHH
T ss_pred ------------EEEE-CCEEEEEEEEECCCChhh-------------hhhHHhhcCCCcEEEEEEECCC-HHHHHHHHH
Confidence 0001 111245899999995432 2234568899998877665433 222121
Q ss_pred -HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
+...++...+ +.|+++|.||+|+.+.
T Consensus 100 ~~~~~i~~~~~-~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 100 KWKGEIQEFCP-NTKMLLVGCKSDLRTD 126 (184)
T ss_dssp THHHHHHHHCT-TCEEEEEEECGGGGGC
T ss_pred HHHHHHHHHCC-CCCEEEEEEcchhhcc
Confidence 2223333333 6899999999999754
No 147
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.05 E-value=3.5e-10 Score=109.73 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~ 59 (625)
....|+|||++|+|||||+|+++|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34689999999999999999999864
No 148
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.04 E-value=1.2e-09 Score=121.06 Aligned_cols=107 Identities=9% Similarity=0.102 Sum_probs=59.1
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
...++++||||.... ..+...|++++|++|+++ +++..-....++..++...+ +.|+|+|+||+|
T Consensus 97 ~~~~~i~Dt~G~e~~-------------~~~~~~~l~~~d~ii~V~-D~s~~~~~~~~~~~l~~~~~-~~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIM-------------HASHQFFMTRSSVYMLLL-DSRTDSNKHYWLRHIEKYGG-KSPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTT-------------TTTCHHHHHSSEEEEEEE-CGGGGGGHHHHHHHHHHHSS-SCCEEEEECCTT
T ss_pred eEEEEEEECCcHHHH-------------HHHHHHHccCCcEEEEEE-eCCCchhHHHHHHHHHHhCC-CCCEEEEEECCC
Confidence 356899999994322 123456788899877755 44433333444545555544 589999999999
Q ss_pred ccCccccHHHHHhCcccccCCCeEEEEeCChhhhhccCCHHH
Q 006928 215 LMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (625)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (625)
+.+......+.+.......+..++.+.+.+..++++....+.
T Consensus 162 l~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~ 203 (535)
T 3dpu_A 162 ENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLK 203 (535)
T ss_dssp TCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHH
T ss_pred cccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHH
Confidence 986543212222211223344566666666666655544443
No 149
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.03 E-value=3.1e-10 Score=119.31 Aligned_cols=82 Identities=20% Similarity=0.335 Sum_probs=44.1
Q ss_pred CCcEEEeCCCCcccCCCC-CCccHHHHHHHHHHHhhcC-------------CCEEEEEEecCCCccccHHHHHHHHHhCC
Q 006928 136 VNLTLIDLPGLTKVAVEG-QPESIVEDIENMVRSYVEK-------------PSCIILAISPANQDIATSDAIKLAREVDP 201 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~-q~~~~~~~i~~~v~~yi~~-------------~~~iIl~v~~a~~d~~~~~~l~l~~~~d~ 201 (625)
..+++|||||+....... .-..+...+......|+.. .++++++|.++...+...+. .+.+.+.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~-~~~~~l~- 172 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-AFMKAIH- 172 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH-HHHHHTC-
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH-HHHHHhc-
Confidence 368999999985433210 1122344444444466643 24567767665655655553 4666665
Q ss_pred CCCceEEEeccCcccCcc
Q 006928 202 TGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 202 ~~~rti~VltK~D~~~~~ 219 (625)
.+.++|+|+||+|+....
T Consensus 173 ~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp S-SCEEEEEECCSSSCHH
T ss_pred cCCCEEEEEECCCCCCHH
Confidence 578999999999998653
No 150
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.02 E-value=2.8e-10 Score=109.82 Aligned_cols=116 Identities=18% Similarity=0.179 Sum_probs=69.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
..+|+|+|++|+|||||+++|++..+ +.... .|.......
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~-~t~~~~~~~-------------------------------------- 67 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFENYTA-------------------------------------- 67 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC-CCSEEEEEE--------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCcC-CccceeEEE--------------------------------------
Confidence 45899999999999999999999875 32211 111110000
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH----
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---- 190 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~---- 190 (625)
.+.+ ......+.|+||||.... ..+...|++++|++|++++..+ .....
T Consensus 68 ------------~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~-~~s~~~~~~ 120 (205)
T 1gwn_A 68 ------------SFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISR-PETLDSVLK 120 (205)
T ss_dssp ------------EEES-SSSEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTC-HHHHHHHHH
T ss_pred ------------EEEE-CCEEEEEEEEeCCCcHhh-------------hHHHHhhccCCCEEEEEEECCC-HHHHHHHHH
Confidence 0000 111246899999995432 2234568899998877665433 22111
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+...++...+ +.|+++|.||+|+.+.
T Consensus 121 ~~~~~i~~~~~-~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 121 KWKGEIQEFCP-NTKMLLVGCKSDLRTD 147 (205)
T ss_dssp THHHHHHHHCT-TCEEEEEEECGGGGGC
T ss_pred HHHHHHHHHCC-CCCEEEEEechhhccc
Confidence 22233343333 6899999999999754
No 151
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.01 E-value=6.9e-11 Score=129.62 Aligned_cols=117 Identities=17% Similarity=0.290 Sum_probs=75.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..|.|+|+|++++|||||+++|++.++.....+..|.-.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i----------------------------------------- 41 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI----------------------------------------- 41 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE-----------------------------------------
Confidence 578999999999999999999998765222211111111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
+ .. .+..++...++||||||.... ..+...+++.+|.+||++ +++.....+ ..
T Consensus 42 --~------~~----~v~~~~g~~i~~iDTPGhe~f-------------~~~~~~~~~~aD~vILVV-Da~dg~~~q-t~ 94 (537)
T 3izy_P 42 --G------AF----LVSLPSGEKITFLDTPGHAAF-------------SAMRARGTQVTDIVILVV-AADDGVMKQ-TV 94 (537)
T ss_dssp --T------SC----CBCSSCSSCCBCEECSSSCCT-------------TTSBBSSSBSBSSCEEEC-BSSSCCCHH-HH
T ss_pred --e------EE----EEEeCCCCEEEEEECCChHHH-------------HHHHHHHHccCCEEEEEE-ECCCCccHH-HH
Confidence 0 00 022223457999999995432 223446778899877754 555444333 33
Q ss_pred HHHHHhCCCCCceEEEeccCcccCc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
..+..+...+.|+|+|+||+|+.+.
T Consensus 95 e~l~~~~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 95 ESIQHAKDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp HHHHHHHTTTCCEEECCBSGGGTTT
T ss_pred HHHHHHHHcCCcEEEEEeccccccc
Confidence 3555555668899999999999754
No 152
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.97 E-value=5.2e-10 Score=119.56 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=44.8
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc---cHHHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA---TSDAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~---~~~~l~l~~~~d~~~~rti~VltK 212 (625)
..++||||||..+ +......++..+|++||++ +++.... +.+.+.+++.+.. .+.++|+||
T Consensus 75 ~~~~iiDtPGh~~-------------~~~~~~~~~~~~D~~ilVv-da~~~~~~~qt~~~~~~~~~~~~--~~iivviNK 138 (403)
T 3sjy_A 75 RRISFIDAPGHEV-------------LMATMLSGAALMDGAILVV-AANEPFPQPQTREHFVALGIIGV--KNLIIVQNK 138 (403)
T ss_dssp EEEEEEECCCCGG-------------GHHHHHHHHTTCSEEEEEE-ETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEEC
T ss_pred ceEEEEECCCcHH-------------HHHHHHHHHhhCCEEEEEE-ECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEEC
Confidence 4689999999321 2445567888999887765 4544432 2334445554432 479999999
Q ss_pred CcccCcc
Q 006928 213 LDLMDKG 219 (625)
Q Consensus 213 ~D~~~~~ 219 (625)
+|+.+..
T Consensus 139 ~Dl~~~~ 145 (403)
T 3sjy_A 139 VDVVSKE 145 (403)
T ss_dssp GGGSCHH
T ss_pred ccccchH
Confidence 9998653
No 153
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.96 E-value=8.9e-10 Score=120.24 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=45.2
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc--HHHHHHHHHhCCCCCceEEEeccC
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--SDAIKLAREVDPTGERTFGVLTKL 213 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~--~~~l~l~~~~d~~~~rti~VltK~ 213 (625)
..++||||||. +.+......++..+|++||++ +++.+... .+.+.+++. .+.|.|+|+||+
T Consensus 73 ~~i~iiDtPGh-------------~~~~~~~~~~~~~aD~~ilVv-da~~g~~~qt~e~l~~~~~---~~ip~IvviNK~ 135 (482)
T 1wb1_A 73 YRITLVDAPGH-------------ADLIRAVVSAADIIDLALIVV-DAKEGPKTQTGEHMLILDH---FNIPIIVVITKS 135 (482)
T ss_dssp EEEEECCCSSH-------------HHHHHHHHHHTTSCCEEEEEE-ETTTCSCHHHHHHHHHHHH---TTCCBCEEEECT
T ss_pred EEEEEEECCCh-------------HHHHHHHHHHHhhCCEEEEEE-ecCCCccHHHHHHHHHHHH---cCCCEEEEEECC
Confidence 57999999993 223455567889999887765 55443332 233334443 478889999999
Q ss_pred cccCc
Q 006928 214 DLMDK 218 (625)
Q Consensus 214 D~~~~ 218 (625)
|+.+.
T Consensus 136 Dl~~~ 140 (482)
T 1wb1_A 136 DNAGT 140 (482)
T ss_dssp TSSCH
T ss_pred Ccccc
Confidence 99864
No 154
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.96 E-value=4.4e-09 Score=115.57 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=72.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
-..|++||.+|+|||||+|+|++..+ +. ...|.-+..-.
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~-------------------------------------- 360 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVET-------------------------------------- 360 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEE--------------------------------------
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEE--------------------------------------
Confidence 35899999999999999999999874 21 11222221111
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
+.. ....+.|+||||.... ..+...|++++|.+|++++..+ .........
T Consensus 361 ---------------~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~i~V~D~~~-~~s~~~~~~ 410 (497)
T 3lvq_E 361 ---------------VTY-KNVKFNVWDVGGQDKI-------------RPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQ 410 (497)
T ss_dssp ---------------EES-SSCEEEEEEECCCGGG-------------SGGGGGGGTTCCEEEEEEETTC-GGGHHHHHH
T ss_pred ---------------EEe-CCEEEEEEECCCcHHH-------------HHHHHHHhccCCEEEEEEECcc-hhHHHHHHH
Confidence 111 2256899999994432 3346789999998877655443 222222222
Q ss_pred HHHHh----CCCCCceEEEeccCcccCcc
Q 006928 195 LAREV----DPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 195 l~~~~----d~~~~rti~VltK~D~~~~~ 219 (625)
+...+ ...+.|+|+|+||+|+.+..
T Consensus 411 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 439 (497)
T 3lvq_E 411 ELHRIINDREMRDAIILIFANKQDLPDAM 439 (497)
T ss_dssp HHHHHHTSGGGTTCEEEEEEECCSSSSCC
T ss_pred HHHHHhhhhhcCCCcEEEEEECCCCCcCC
Confidence 22222 22478999999999997643
No 155
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.94 E-value=1.9e-09 Score=116.30 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=74.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+++|..++|||||+++|++..- .+..+..-.+. +. ....++.-.+++-+.+....+
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~-----~i~~~~~~~~~--~~---------~~~~g~~~~~~a~~~d~~~~e--- 76 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTG-----MVDKRTLEKYE--RE---------AKEKNRETWYLSWALDTNQEE--- 76 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcC-----CCchHHHHHHH--HH---------HHhccccchhhhhhhccchhH---
Confidence 456899999999999999999976532 11111000000 00 000000000001111111110
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc------
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI------ 187 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~------ 187 (625)
...+++-+.....+..++ ..++||||||.. .+......++..+|++||+|. ++...
T Consensus 77 ---r~~GiTid~~~~~~~~~~-~~~~iiDTPGh~-------------~f~~~~~~~~~~aD~~ilVVD-a~~g~~e~~~~ 138 (439)
T 3j2k_7 77 ---RDKGKTVEVGRAYFETEK-KHFTILDAPGHK-------------SFVPNMIGGASQADLAVLVIS-ARKGEFETGFE 138 (439)
T ss_pred ---hhcCceEEEeEEEEecCC-eEEEEEECCChH-------------HHHHHHHhhHhhCCEEEEEEE-CCCCccccccC
Confidence 112333333333343333 589999999932 224445667889998887665 44432
Q ss_pred ---ccHHHHHHHHHhCCCCCc-eEEEeccCcccC
Q 006928 188 ---ATSDAIKLAREVDPTGER-TFGVLTKLDLMD 217 (625)
Q Consensus 188 ---~~~~~l~l~~~~d~~~~r-ti~VltK~D~~~ 217 (625)
.+.+.+.++. ..+.+ .|+|+||+|+.+
T Consensus 139 ~~~qt~e~l~~~~---~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 139 KGGQTREHAMLAK---TAGVKHLIVLINKMDDPT 169 (439)
T ss_pred CCchHHHHHHHHH---HcCCCeEEEEeecCCCcc
Confidence 2223333333 34666 899999999964
No 156
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.92 E-value=1.3e-09 Score=112.72 Aligned_cols=117 Identities=23% Similarity=0.213 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+++|.+|+|||||++++++..+ +.....+|.......
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~------------------------------------- 195 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSAN------------------------------------- 195 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEE-------------------------------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEE-------------------------------------
Confidence 457899999999999999999998765 322222221111000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH--
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~-- 191 (625)
+.+ ......+.|+||||.... ..+...|++++|++|++++ ++.......
T Consensus 196 --------------~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~ 246 (332)
T 2wkq_A 196 --------------VMV-DGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFS-LVSPASFHHVR 246 (332)
T ss_dssp --------------EEE-TTEEEEEEEEEECCCGGG-------------TTTGGGGCTTCSEEEEEEE-TTCHHHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEeCCCchhh-------------hHHHHHhccCCCEEEEEEe-CCCHHHHHHHH
Confidence 001 011134679999996542 2345568899998877655 433222222
Q ss_pred --HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 --AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 --~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
+...++...+ +.|+++|+||+|+.+.
T Consensus 247 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 247 AKWYPEVRHHCP-NTPIILVGTKLDLRDD 274 (332)
T ss_dssp HTHHHHHHHHCT-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHhhCC-CCcEEEEEEchhcccc
Confidence 2233444444 7899999999999764
No 157
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.91 E-value=9.8e-10 Score=103.79 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=41.0
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc----HHHHHHHHHhCCCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT----SDAIKLAREVDPTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~----~~~l~l~~~~d~~~~rti~Vlt 211 (625)
..+.++||||.. ....+...|++.++++++++. .+..... ..++..++...+ +.++++|.|
T Consensus 56 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~i~v~d-~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~n 120 (184)
T 2zej_A 56 LVLNVWDFAGRE-------------EFYSTHPHFMTQRALYLAVYD-LSKGQAEVDAMKPWLFNIKARAS-SSPVILVGT 120 (184)
T ss_dssp CEEEEEEECSHH-------------HHHTTSHHHHHHSEEEEEEEE-GGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEE
T ss_pred eEEEEEecCCCH-------------HHHHhhHHHccCCcEEEEEEe-CCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEE
Confidence 468899999942 223445677888887766544 3332111 122222222222 678999999
Q ss_pred cCcccCc
Q 006928 212 KLDLMDK 218 (625)
Q Consensus 212 K~D~~~~ 218 (625)
|+|+.+.
T Consensus 121 K~Dl~~~ 127 (184)
T 2zej_A 121 HLDVSDE 127 (184)
T ss_dssp CGGGCCH
T ss_pred CCCcccc
Confidence 9999754
No 158
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.90 E-value=1.6e-09 Score=103.32 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~ 59 (625)
...|++||++|+|||||+|+++|..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCc
Confidence 4689999999999999999999743
No 159
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.89 E-value=2.2e-09 Score=120.31 Aligned_cols=147 Identities=15% Similarity=0.139 Sum_probs=76.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|++||.+|+|||||+|+|++... .+..+.. ..+.......+..-.++.-+.....++.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~-----~i~~~~i-----------~~~~~~~~~~g~~~~~~a~~~d~~~~e~-- 227 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLN-----IVNQSQL-----------RKLQRESETMGKSSFKFAWIMDQTNEER-- 227 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSS-----CSCCHHH-----------HHHHHHSSCSSSSCCSSSHHHHHHHHHH--
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcC-----CccHHHH-----------HHHHhhhhhccccccceeeeeccchhhh--
Confidence 356899999999999999999998742 1111100 0000000000111112222222222221
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-------
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD------- 186 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d------- 186 (625)
..| ++.+.....+..+ ...++||||||..+ +...+..+++.+|++||+|. ++.+
T Consensus 228 ~~G----iTid~~~~~~~~~-~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVD-a~~g~~e~~~~ 288 (611)
T 3izq_1 228 ERG----VTVSICTSHFSTH-RANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVD-CSTNAFESGFD 288 (611)
T ss_dssp HTT----TCCSCSCCEEECS-SCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEE-CSHHHHHTTCC
T ss_pred hCC----eeEeeeeEEEecC-CceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEE-CCCCcccccch
Confidence 222 2222222223333 36799999999632 24455678899998877654 4432
Q ss_pred cccHHHHHHHHHhCCCCC-ceEEEeccCcccCc
Q 006928 187 IATSDAIKLAREVDPTGE-RTFGVLTKLDLMDK 218 (625)
Q Consensus 187 ~~~~~~l~l~~~~d~~~~-rti~VltK~D~~~~ 218 (625)
+..+. ...+..+...+. ++|+|+||+|+.+.
T Consensus 289 ~~~qt-~e~l~~~~~lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 289 LDGQT-KEHMLLASSLGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp TTSHH-HHHHHHHHTTTCCEEEEEEECTTTTTT
T ss_pred hhhHH-HHHHHHHHHcCCCeEEEEEecccccch
Confidence 11222 222222333344 48999999999863
No 160
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.88 E-value=4.3e-09 Score=110.03 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=23.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|.|+++|.+|||||||+|+|+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999984
No 161
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.88 E-value=2e-09 Score=117.75 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=50.6
Q ss_pred ccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc------ccc--HH
Q 006928 120 QISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD------IAT--SD 191 (625)
Q Consensus 120 ~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d------~~~--~~ 191 (625)
+++.+.....+..+ ...++||||||..+ +...+..+++.+|++||++...+.. +.. .+
T Consensus 96 GiTi~~~~~~~~~~-~~~~~iiDTPG~~~-------------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e 161 (483)
T 3p26_A 96 GVTVSICTSHFSTH-RANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE 161 (483)
T ss_dssp CSSCCCCEEEEECS-SCEEEEECCCCCGG-------------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHH
T ss_pred CcceEeeeEEEecC-CceEEEEECCCcHH-------------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHH
Confidence 44444444444443 46899999999633 2455677889999888766544321 112 22
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+.++..+. -.+.|+|+||+|+.+.
T Consensus 162 ~~~~~~~~~--~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 162 HMLLASSLG--IHNLIIAMNKMDNVDW 186 (483)
T ss_dssp HHHHHHHTT--CCCEEEEEECGGGGTT
T ss_pred HHHHHHHcC--CCcEEEEEECcCcccc
Confidence 233444332 1469999999999863
No 162
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.88 E-value=7.4e-09 Score=110.78 Aligned_cols=68 Identities=24% Similarity=0.285 Sum_probs=42.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc---ccHHHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---ATSDAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~---~~~~~l~l~~~~d~~~~rti~VltK 212 (625)
..++||||||. +.+......++..+|.+||++ +++... .+.+.+.+++.+. ..+.|+|+||
T Consensus 81 ~~i~iiDtPGh-------------~~f~~~~~~~~~~~D~~ilVv-da~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK 144 (408)
T 1s0u_A 81 RRVSFVDSPGH-------------ETLMATMLSGASLMDGAILVI-AANEPCPQPQTKEHLMALEILG--IDKIIIVQNK 144 (408)
T ss_dssp EEEEEEECSSH-------------HHHHHHHHTTCSCCSEEEEEE-ETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEEC
T ss_pred cEEEEEECCCH-------------HHHHHHHHHhHhhCCEEEEEE-ECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEc
Confidence 46899999992 222334455667889877755 555433 2223343444332 2478999999
Q ss_pred CcccCcc
Q 006928 213 LDLMDKG 219 (625)
Q Consensus 213 ~D~~~~~ 219 (625)
+|+.+..
T Consensus 145 ~Dl~~~~ 151 (408)
T 1s0u_A 145 IDLVDEK 151 (408)
T ss_dssp TTSSCTT
T ss_pred cCCCCHH
Confidence 9998653
No 163
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.87 E-value=6e-09 Score=99.65 Aligned_cols=117 Identities=16% Similarity=0.183 Sum_probs=67.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCccccccccc-ccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV-TRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~-Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
...|+++|+.|||||||+++|+|..+ +....+. +..+.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 43 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFA---------------------------------------- 43 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC-CC---CCCSCEEE----------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceeEE----------------------------------------
Confidence 56899999999999999999999875 2111110 00000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH---
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--- 190 (625)
.-.+.+.+ ....+.++||||.... +.+...|.+.++++++++ +........
T Consensus 44 -----------~~~i~~~g-~~~~~~i~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~ 97 (199)
T 2f9l_A 44 -----------TRSIQVDG-KTIKAQIWDTAGQERY-------------RRITSAYYRGAVGALLVY-DIAKHLTYENVE 97 (199)
T ss_dssp -----------EEEEEETT-EEEEEEEEECSSGGGT-------------TCCCHHHHTTCSEEEEEE-ETTCHHHHHTHH
T ss_pred -----------EEEEEECC-EEEEEEEEECCCchhh-------------hhhhHHHHhcCCEEEEEE-ECcCHHHHHHHH
Confidence 00111111 1134788999995432 223456778899877655 443322211
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.++..++.....+.+++.|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 98 RWLKELRDHADSNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 2222233334457899999999998753
No 164
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.87 E-value=3.4e-09 Score=116.64 Aligned_cols=137 Identities=15% Similarity=0.207 Sum_probs=79.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCccccccccccc-ccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTR-RPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr-~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (625)
..+.|+++|.+|||||||+|+|++..-.....|.+.. .+ .+.. +.+....+
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~--------------------~~~~------~~d~~~~e-- 63 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKA--------------------ARHA------TSDWMELE-- 63 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC------------------------CC------HHHHHHHH--
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeecccc--------------------ccce------ecccchhh--
Confidence 4679999999999999999999854311100010000 00 0000 01111111
Q ss_pred hhhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHH
Q 006928 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (625)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~ 192 (625)
+..| ..+....+.+.. ....++||||||..+. ...+..+++.+|++|+++. ++.....+.
T Consensus 64 ~~~G--iTi~~~~~~~~~---~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~allVvD-a~~g~~~~t- 123 (528)
T 3tr5_A 64 KQRG--ISVTTSVMQFPY---KDYLINLLDTPGHADF-------------TEDTYRTLTAVDSALMVID-AAKGVEPRT- 123 (528)
T ss_dssp HHHC--CSSSSSEEEEEE---TTEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEE-TTTCSCHHH-
T ss_pred hcCC--eeEEEeEEEEEe---CCEEEEEEECCCchhH-------------HHHHHHHHHhCCEEEEEEe-CCCCCCHHH-
Confidence 1112 223333333332 2367999999996542 2347789999998877654 444443333
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCc
Q 006928 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
..+.+.+...+.|+++|+||+|+...
T Consensus 124 ~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 124 IKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 33555566678999999999999654
No 165
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.87 E-value=9.1e-09 Score=110.14 Aligned_cols=67 Identities=22% Similarity=0.293 Sum_probs=43.4
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc---ccHHHHHHHHHhCCCCCceEEEecc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---ATSDAIKLAREVDPTGERTFGVLTK 212 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~---~~~~~l~l~~~~d~~~~rti~VltK 212 (625)
..++||||||. +.+.......+..+|.+||++ +++... .+.+.+.+++.+. ..+.|+|+||
T Consensus 83 ~~i~iiDtPGh-------------~~f~~~~~~~~~~~D~~ilVv-da~~g~~~~qt~e~l~~~~~~~--~~~iivviNK 146 (410)
T 1kk1_A 83 RRVSFIDAPGH-------------EALMTTMLAGASLMDGAILVI-AANEPCPRPQTREHLMALQIIG--QKNIIIAQNK 146 (410)
T ss_dssp EEEEEEECSSH-------------HHHHHHHHHCGGGCSEEEEEE-ETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEEC
T ss_pred cEEEEEECCCh-------------HHHHHHHHhhhhhCCEEEEEE-ECCCCCCChhHHHHHHHHHHcC--CCcEEEEEEC
Confidence 46899999992 222344456677889887755 555433 2334444555443 2478999999
Q ss_pred CcccCc
Q 006928 213 LDLMDK 218 (625)
Q Consensus 213 ~D~~~~ 218 (625)
+|+.+.
T Consensus 147 ~Dl~~~ 152 (410)
T 1kk1_A 147 IELVDK 152 (410)
T ss_dssp GGGSCH
T ss_pred ccCCCH
Confidence 999864
No 166
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.86 E-value=4e-09 Score=117.15 Aligned_cols=134 Identities=17% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.|+++|..++|||||+++|++.. +..++.. .. . .+.|... . .+
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~--~~--~----------------~~~D~~~------~--Er 50 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYT------GAISERE--KR--E----------------QLLDTLD------V--ER 50 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHH------TC----------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcc------CCccccc--cc--c----------------cccccch------h--hh
Confidence 46799999999999999999998632 1111110 00 0 0000000 0 00
Q ss_pred hhCCCCccccccEEEEEecCC--CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPN--VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~--~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~ 191 (625)
..+..+....+.+....++ ...++||||||..+. ...+..+++.+|++||+| +++.....+.
T Consensus 51 --erGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF-------------~~ev~r~l~~aD~aILVV-Da~~gv~~qt 114 (600)
T 2ywe_A 51 --ERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF-------------SYEVSRALAACEGALLLI-DASQGIEAQT 114 (600)
T ss_dssp -------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG-------------HHHHHHHHHTCSEEEEEE-ETTTBCCHHH
T ss_pred --cccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH-------------HHHHHHHHHhCCEEEEEE-ECCCCccHHH
Confidence 1112233344455444322 257889999996542 334667789999887755 5554444333
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.. ........+.|.|+|+||+|+...
T Consensus 115 ~~-~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 115 VA-NFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp HH-HHHHHHHTTCEEEEEEECTTSTTC
T ss_pred HH-HHHHHHHCCCCEEEEEeccCcccc
Confidence 22 222222357899999999999754
No 167
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.85 E-value=1.4e-08 Score=106.44 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
..+.|+++|.+|+|||||+++|++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999743
No 168
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.84 E-value=4.7e-09 Score=101.05 Aligned_cols=78 Identities=19% Similarity=0.311 Sum_probs=43.3
Q ss_pred CcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhh---cCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 006928 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV---EKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (625)
Q Consensus 137 ~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi---~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 213 (625)
.+.++||||+..... +....+.++..+..|+ ...+.++++ .++.......+ .++.+.+...+.+.++|.||+
T Consensus 73 ~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEV---PEEMKRKWQRALGEYLEKRQSLQGLVVL-MDIRHPLKDLD-QQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEE-EETTSCCCHHH-HHHHHHHHHTTCCEEEEEECG
T ss_pred CEEEEECcCCccccc---CHHHHHHHHHHHHHHHHhhhcccEEEEE-EECCCCCchhH-HHHHHHHHHcCCCeEEEEecc
Confidence 688999999764211 1112334455555566 356665554 44544333222 123333334578899999999
Q ss_pred cccCcc
Q 006928 214 DLMDKG 219 (625)
Q Consensus 214 D~~~~~ 219 (625)
|+...+
T Consensus 148 D~~s~~ 153 (210)
T 1pui_A 148 DKLASG 153 (210)
T ss_dssp GGSCHH
T ss_pred cCCCch
Confidence 998765
No 169
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.82 E-value=3.8e-09 Score=117.58 Aligned_cols=134 Identities=17% Similarity=0.244 Sum_probs=68.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
+...|+++|+.++|||||+++|++.. +..++.- .. . .+.|... . .+
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~--~~--~----------------~~~D~~~------~--Er 48 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQIC------GGLSDRE--ME--A----------------QVLDSMD------L--ER 48 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHT------TC----------------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc------CCccccc--cc--c----------------cccccch------h--hh
Confidence 46789999999999999999998642 1111110 00 0 0000000 0 00
Q ss_pred hhCCCCccccccEEEEEecCC--CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPN--VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~--~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~ 191 (625)
..+..+....+.+.....+ ...++||||||..+. ...+..+++.+|.+||+| +++.....+.
T Consensus 49 --erGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF-------------~~ev~~~l~~aD~aILVV-Da~~gv~~qt 112 (599)
T 3cb4_D 49 --ERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF-------------SYEVSRSLAACEGALLVV-DAGQGVEAQT 112 (599)
T ss_dssp ----------CEEEEEEECTTSCEEEEEEEECCCCGGG-------------HHHHHHHHHHCSEEEEEE-ETTTCCCTHH
T ss_pred --cccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEE-ECCCCCCHHH
Confidence 0112233334444443212 257899999996432 345677888899887755 4544444333
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
...+. .....+.|.|+|+||+|+.+.
T Consensus 113 ~~~~~-~~~~~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 113 LANCY-TAMEMDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp HHHHH-HHHHTTCEEEEEEECTTSTTC
T ss_pred HHHHH-HHHHCCCCEEEeeeccCcccc
Confidence 22222 222347899999999999764
No 170
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.80 E-value=1.2e-08 Score=112.45 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=49.5
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
...++||||||..+. ...+..|+..+|++|+++.+ ......+ ...+.+.+...+.|.++|+||+|
T Consensus 81 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvDa-~~g~~~~-t~~~~~~~~~~~ipiivviNK~D 145 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDF-------------SEDTYRTLTAVDCCLMVIDA-AKGVEDR-TRKLMEVTRLRDTPILTFMNKLD 145 (529)
T ss_dssp TEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEET-TTCSCHH-HHHHHHHHTTTTCCEEEEEECTT
T ss_pred CeEEEEEECCCChhH-------------HHHHHHHHHHCCEEEEEEeC-CccchHH-HHHHHHHHHHcCCCEEEEEcCcC
Confidence 367999999997432 23466789999988876654 4333333 23455666667899999999999
Q ss_pred ccCcc
Q 006928 215 LMDKG 219 (625)
Q Consensus 215 ~~~~~ 219 (625)
+....
T Consensus 146 l~~~~ 150 (529)
T 2h5e_A 146 RDIRD 150 (529)
T ss_dssp SCCSC
T ss_pred Ccccc
Confidence 97653
No 171
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.77 E-value=1.7e-08 Score=107.24 Aligned_cols=134 Identities=16% Similarity=0.257 Sum_probs=76.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
.|.++|||..|||||||+|+|+|..+..... ....|..
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~--~~~~~~~---------------------------------------- 79 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPA--THTQPGV---------------------------------------- 79 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSC----------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcC--CCCCccc----------------------------------------
Confidence 4669999999999999999999985421110 0000100
Q ss_pred hCCCCccccccEEEEEecCC-CCCcEEEeCCCCcccCCCC-CCcc----HHHHHHHHHHHhhc---------C--CCEEE
Q 006928 115 TGKSKQISNIPIQLSIYSPN-VVNLTLIDLPGLTKVAVEG-QPES----IVEDIENMVRSYVE---------K--PSCII 177 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~-~~~ltlvDlPGi~~~~~~~-q~~~----~~~~i~~~v~~yi~---------~--~~~iI 177 (625)
....+.+....+. .+.++++|+||+....... .-.. +..++......+.. + .|+++
T Consensus 80 -------~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v 152 (427)
T 2qag_B 80 -------QLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCL 152 (427)
T ss_dssp -------EEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEE
T ss_pred -------eEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEE
Confidence 0001111122222 2478999999987532210 0011 22333344444421 1 24567
Q ss_pred EEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 178 LAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 178 l~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+++.+++.++...+. .+++.+. .+.++|.|+||+|.+.+.
T Consensus 153 ~fI~d~~~~l~~~Di-eilk~L~-~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 153 YFIAPTGHSLKSLDL-VTMKKLD-SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp EEECCCC---CHHHH-HHHHHTC-SCSEEEEEESCGGGSCHH
T ss_pred EEEeCCCCCCCHHHH-HHHHHHh-hCCCEEEEEcchhccchH
Confidence 778888877777764 5888887 689999999999998764
No 172
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.77 E-value=1.9e-08 Score=95.60 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=23.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
...|+++|+.|||||||+++|+|..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999865
No 173
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.75 E-value=2.7e-09 Score=116.11 Aligned_cols=114 Identities=21% Similarity=0.338 Sum_probs=70.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..|.|+++|+.++|||||+++|.+..+.....+..|...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i----------------------------------------- 41 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHI----------------------------------------- 41 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCS-----------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeE-----------------------------------------
Confidence 578999999999999999999997654211111011000
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccc--cHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA--TSD 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~--~~~ 191 (625)
+ . ..+.. +...++||||||..... .+...++..+|++||++. ++.... +.+
T Consensus 42 --~------~----~~v~~-~~~~i~~iDTPGhe~f~-------------~~~~~~~~~aD~aILVVd-a~~g~~~qT~e 94 (501)
T 1zo1_I 42 --G------A----YHVET-ENGMITFLDTPGHAAFT-------------SMRARGAQATDIVVLVVA-ADDGVMPQTIE 94 (501)
T ss_dssp --S------C----CCCCT-TSSCCCEECCCTTTCCT-------------TSBCSSSBSCSSEEEEEE-TTTBSCTTTHH
T ss_pred --E------E----EEEEE-CCEEEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEEee-cccCccHHHHH
Confidence 0 0 00111 12478999999964332 123456788998888664 544332 233
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+..++ ..+.|+|+|+||+|+.+.
T Consensus 95 ~l~~~~---~~~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 95 AIQHAK---AAQVPVVVAVNKIDKPEA 118 (501)
T ss_dssp HHHHHH---HTTCCEEEEEECSSSSTT
T ss_pred HHHHHH---hcCceEEEEEEecccccc
Confidence 343443 347889999999999753
No 174
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.75 E-value=6.4e-09 Score=115.83 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=43.3
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
+.++||||||...... +...+++.+|.+||++ +++..+..+. ....+.+...+.|+|+|+||+|+
T Consensus 70 ~~i~liDTPGhe~F~~-------------~~~r~~~~aD~aILVv-Da~~Gv~~qT-~e~l~~l~~~~vPiIVViNKiDl 134 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTT-------------LRKRGGALADLAILIV-DINEGFKPQT-QEALNILRMYRTPFVVAANKIDR 134 (594)
T ss_dssp CEEEEECCCTTSCCTT-------------SBCSSSBSCSEEEEEE-ETTTCCCHHH-HHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCEEEEECCCcHHHHH-------------HHHHHHhhCCEEEEEE-ECCCCccHhH-HHHHHHHHHcCCeEEEEeccccc
Confidence 4589999999654322 2335678899877755 5554443322 22223333457899999999999
Q ss_pred cC
Q 006928 216 MD 217 (625)
Q Consensus 216 ~~ 217 (625)
..
T Consensus 135 ~~ 136 (594)
T 1g7s_A 135 IH 136 (594)
T ss_dssp ST
T ss_pred cc
Confidence 75
No 175
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.75 E-value=3.9e-08 Score=105.99 Aligned_cols=147 Identities=14% Similarity=0.136 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+++|..++|||||+++|++..- .+.++....+. .+.. + ....+.. .++..+.+....+
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~-----~i~~~~~~~i~--~~s~---~---~gt~~~~-~~~~~~~d~~~~E--- 85 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSK-----MIYEDHLEAIT--RDSK---K---SGTTGDD-VDLALLVDGLQAE--- 85 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTT-----CC--------------------------CCC---CHHHHHHHHC----
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcC-----CCchhhhhhhh--hhhh---c---cCccccc-hhhhhhhccChhH---
Confidence 356899999999999999999997642 11111100000 0000 0 0000000 0111111111111
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH--H
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--D 191 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--~ 191 (625)
...+++-+.-...+.. ....++||||||..+ +......++..+|++||++ +++.....+ +
T Consensus 86 ---~~rGiTi~~~~~~~~~-~~~~~~iiDtpGh~~-------------f~~~~~~~~~~aD~~ilVv-Da~~g~~~qt~~ 147 (434)
T 1zun_B 86 ---REQGITIDVAYRYFST-AKRKFIIADTPGHEQ-------------YTRNMATGASTCDLAIILV-DARYGVQTQTRR 147 (434)
T ss_dssp -------CCCCCEEEEEEC-SSEEEEEEECCCSGG-------------GHHHHHHHHTTCSEEEEEE-ETTTCSCHHHHH
T ss_pred ---HHCCcEEEeeeeEeec-CCceEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEE-ECCCCCcHHHHH
Confidence 1223333332222322 335799999999432 1334456789999887765 454443322 3
Q ss_pred HHHHHHHhCCCCC-ceEEEeccCcccCc
Q 006928 192 AIKLAREVDPTGE-RTFGVLTKLDLMDK 218 (625)
Q Consensus 192 ~l~l~~~~d~~~~-rti~VltK~D~~~~ 218 (625)
.+.++... +. +.|+|+||+|+.+.
T Consensus 148 ~l~~~~~~---~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 148 HSYIASLL---GIKHIVVAINKMDLNGF 172 (434)
T ss_dssp HHHHHHHT---TCCEEEEEEECTTTTTS
T ss_pred HHHHHHHc---CCCeEEEEEEcCcCCcc
Confidence 34445443 44 58999999999863
No 176
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.74 E-value=3.8e-08 Score=104.87 Aligned_cols=81 Identities=16% Similarity=0.381 Sum_probs=42.2
Q ss_pred CCcEEEeCCCCcccCCCC-CCccHHHHHHHHHHHhh-----------cCCC--EEEEEEecCCCccccHHHHHHHHHhCC
Q 006928 136 VNLTLIDLPGLTKVAVEG-QPESIVEDIENMVRSYV-----------EKPS--CIILAISPANQDIATSDAIKLAREVDP 201 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~-q~~~~~~~i~~~v~~yi-----------~~~~--~iIl~v~~a~~d~~~~~~l~l~~~~d~ 201 (625)
+.++++|+||+....... .-..+.+.+......|+ .+++ ++++++.|....+...+. .+.+.+..
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L~~ 166 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRLHE 166 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHHTT
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHHhc
Confidence 478999999987542210 01122233333333443 3444 445545454345555553 46677765
Q ss_pred CCCceEEEeccCcccCc
Q 006928 202 TGERTFGVLTKLDLMDK 218 (625)
Q Consensus 202 ~~~rti~VltK~D~~~~ 218 (625)
+.++|.|+||+|++..
T Consensus 167 -~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 167 -KVNIIPLIAKADTLTP 182 (418)
T ss_dssp -TSEEEEEEESTTSSCH
T ss_pred -cCcEEEEEEcccCccH
Confidence 7899999999999864
No 177
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.73 E-value=2.7e-08 Score=104.72 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=41.1
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc--HHHHHHHHHhCCCCCce-EEEec-
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--SDAIKLAREVDPTGERT-FGVLT- 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~--~~~l~l~~~~d~~~~rt-i~Vlt- 211 (625)
..++||||||..+. ......+++.+|++||+|. +..+.. .+.+.+++. .+.+. |+|+|
T Consensus 60 ~~i~iiDtPGh~~f-------------~~~~~~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~~---~~i~~~ivvvNN 121 (370)
T 2elf_A 60 RNMVFVDAHSYPKT-------------LKSLITALNISDIAVLCIP--PQGLDAHTGECIIALDL---LGFKHGIIALTR 121 (370)
T ss_dssp SEEEEEECTTTTTC-------------HHHHHHHHHTCSEEEEEEC--TTCCCHHHHHHHHHHHH---TTCCEEEEEECC
T ss_pred eEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEc--CCCCcHHHHHHHHHHHH---cCCCeEEEEEEe
Confidence 46999999995431 2234456689999888765 444443 333434443 45676 99999
Q ss_pred cCcc
Q 006928 212 KLDL 215 (625)
Q Consensus 212 K~D~ 215 (625)
|+|+
T Consensus 122 K~Dl 125 (370)
T 2elf_A 122 SDST 125 (370)
T ss_dssp GGGS
T ss_pred ccCC
Confidence 9999
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.73 E-value=1e-08 Score=109.27 Aligned_cols=125 Identities=22% Similarity=0.294 Sum_probs=69.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
.+.|++||.+||||||||++|+|....-.+....|..|..-.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~-------------------------------------- 198 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGV-------------------------------------- 198 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEE--------------------------------------
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeE--------------------------------------
Confidence 456999999999999999999998531112222333331100
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc-HHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT-SDAI 193 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~-~~~l 193 (625)
+..++...++++|+||+......... +.. .....++.++.++.++......+.. +...
T Consensus 199 ---------------V~~~~~~~~~l~DtpGli~~a~~~~~--L~~----~fl~~~era~~lL~vvDls~~~~~~ls~g~ 257 (416)
T 1udx_A 199 ---------------VEVSEEERFTLADIPGIIEGASEGKG--LGL----EFLRHIARTRVLLYVLDAADEPLKTLETLR 257 (416)
T ss_dssp ---------------EECSSSCEEEEEECCCCCCCGGGSCC--SCH----HHHHHHTSSSEEEEEEETTSCHHHHHHHHH
T ss_pred ---------------EEecCcceEEEEeccccccchhhhhh--hhH----HHHHHHHHHHhhhEEeCCccCCHHHHHHHH
Confidence 11222356899999999764322111 111 1233457789776655433121211 1111
Q ss_pred HHHHHhCC--CCCceEEEeccCcccCc
Q 006928 194 KLAREVDP--TGERTFGVLTKLDLMDK 218 (625)
Q Consensus 194 ~l~~~~d~--~~~rti~VltK~D~~~~ 218 (625)
+-...+.+ ...|.++|+||+|+...
T Consensus 258 ~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 258 KEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp HHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred HHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 11122221 24789999999999865
No 179
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.73 E-value=4.4e-08 Score=104.65 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=44.2
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH--HHHHHHHHhCCCCCc-eEEEec
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGER-TFGVLT 211 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--~~l~l~~~~d~~~~r-ti~Vlt 211 (625)
...++||||||..+. ......++..+|.+|+++. ++.....+ +.+.+++. .+.+ .++|+|
T Consensus 74 ~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvd-a~~g~~~qt~~~l~~~~~---~~ip~iivviN 136 (405)
T 2c78_A 74 KRHYSHVDCPGHADY-------------IKNMITGAAQMDGAILVVS-AADGPMPQTREHILLARQ---VGVPYIVVFMN 136 (405)
T ss_dssp SCEEEEEECCCSGGG-------------HHHHHHHHTTCSSEEEEEE-TTTCCCHHHHHHHHHHHH---TTCCCEEEEEE
T ss_pred CeEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEE-CCCCCcHHHHHHHHHHHH---cCCCEEEEEEE
Confidence 467999999995431 3445678889998888665 44333222 23334433 4677 789999
Q ss_pred cCcccC
Q 006928 212 KLDLMD 217 (625)
Q Consensus 212 K~D~~~ 217 (625)
|+|+.+
T Consensus 137 K~Dl~~ 142 (405)
T 2c78_A 137 KVDMVD 142 (405)
T ss_dssp CGGGCC
T ss_pred CccccC
Confidence 999985
No 180
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.69 E-value=4.6e-09 Score=113.92 Aligned_cols=65 Identities=25% Similarity=0.323 Sum_probs=42.5
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc---------ccHHHHHHHHHhCCCCCc-
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---------ATSDAIKLAREVDPTGER- 205 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~---------~~~~~l~l~~~~d~~~~r- 205 (625)
..++||||||..+ +...+..++..+|++||+| +++... .+.+.+.+++. .+.+
T Consensus 85 ~~~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVv-da~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~ 147 (458)
T 1f60_A 85 YQVTVIDAPGHRD-------------FIKNMITGTSQADCAILII-AGGVGEFEAGISKDGQTREHALLAFT---LGVRQ 147 (458)
T ss_dssp EEEEEEECCCCTT-------------HHHHHHHSSSCCSEEEEEE-ECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCE
T ss_pred ceEEEEECCCcHH-------------HHHHHHhhhhhCCEEEEEE-eCCcCccccccCcchhHHHHHHHHHH---cCCCe
Confidence 5799999999421 2444567889999887765 454322 12223334443 3555
Q ss_pred eEEEeccCcccC
Q 006928 206 TFGVLTKLDLMD 217 (625)
Q Consensus 206 ti~VltK~D~~~ 217 (625)
.|+|+||+|+.+
T Consensus 148 iivviNK~Dl~~ 159 (458)
T 1f60_A 148 LIVAVNKMDSVK 159 (458)
T ss_dssp EEEEEECGGGGT
T ss_pred EEEEEEcccccc
Confidence 899999999984
No 181
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.69 E-value=6.6e-09 Score=108.31 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=26.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccccccccccccc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 72 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p 72 (625)
.+|++||.+|+|||||+|+|+|..+.......||..|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p 39 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP 39 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc
Confidence 3799999999999999999999874222333466666
No 182
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.69 E-value=6.1e-08 Score=103.22 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=43.8
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH--HHHHHHHHhCCCCCc-eEEEec
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGER-TFGVLT 211 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~--~~l~l~~~~d~~~~r-ti~Vlt 211 (625)
...++||||||.. .+......++..+|++||++. ++.....+ +.+.+++. .+.+ .++|+|
T Consensus 65 ~~~~~iiDtpG~~-------------~f~~~~~~~~~~aD~~ilVvd-a~~g~~~qt~e~l~~~~~---~~vp~iivviN 127 (397)
T 1d2e_A 65 ARHYAHTDCPGHA-------------DYVKNMITGTAPLDGCILVVA-ANDGPMPQTREHLLLARQ---IGVEHVVVYVN 127 (397)
T ss_dssp SCEEEEEECSSHH-------------HHHHHHHHTSSCCSEEEEEEE-TTTCSCHHHHHHHHHHHH---TTCCCEEEEEE
T ss_pred CeEEEEEECCChH-------------HHHHHHHhhHhhCCEEEEEEE-CCCCCCHHHHHHHHHHHH---cCCCeEEEEEE
Confidence 4679999999932 234455678899998887664 44433222 23334443 4677 579999
Q ss_pred cCcccC
Q 006928 212 KLDLMD 217 (625)
Q Consensus 212 K~D~~~ 217 (625)
|+|+.+
T Consensus 128 K~Dl~~ 133 (397)
T 1d2e_A 128 KADAVQ 133 (397)
T ss_dssp CGGGCS
T ss_pred CcccCC
Confidence 999985
No 183
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.69 E-value=1.4e-08 Score=115.59 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=46.8
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
...+.||||||..+. ...+..+++.+|.+|+++. +......+.. .+.+.+...+.+.++|+||+|
T Consensus 74 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~llVvD-a~~g~~~~~~-~~~~~~~~~~~p~ilviNK~D 138 (693)
T 2xex_A 74 GHRVNIIDTPGHVDF-------------TVEVERSLRVLDGAVTVLD-AQSGVEPQTE-TVWRQATTYGVPRIVFVNKMD 138 (693)
T ss_dssp TEEEEEECCCCCSSC-------------CHHHHHHHHHCSEEEEEEE-TTTBSCHHHH-HHHHHHHHTTCCEEEEEECTT
T ss_pred CeeEEEEECcCCcch-------------HHHHHHHHHHCCEEEEEEC-CCCCCcHHHH-HHHHHHHHcCCCEEEEEECCC
Confidence 367999999997642 2335678888998777655 4444433322 233344445789999999999
Q ss_pred ccCc
Q 006928 215 LMDK 218 (625)
Q Consensus 215 ~~~~ 218 (625)
+...
T Consensus 139 l~~~ 142 (693)
T 2xex_A 139 KLGA 142 (693)
T ss_dssp STTC
T ss_pred cccc
Confidence 9864
No 184
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.61 E-value=3.3e-08 Score=104.00 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=49.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
-.+|++||.+|+|||||+|+|+|..+.......||..|..-.+. . ++. .+ ..+.+ .
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~-v------------~~~------r~-~~l~~----~ 77 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVP-V------------PDE------RF-DFLCQ----Y 77 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEE-C------------CCH------HH-HHHHH----H
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEE-E------------CCc------cc-eeecc----c
Confidence 45799999999999999999999875222233466666332210 0 010 00 00000 0
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN 184 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~ 184 (625)
... .. . ....++||||||+...... .+.+...+..+++++|+|+++| ++.
T Consensus 78 ~~p--------~~--~---~~~~i~lvDtpGl~~~as~------~~glg~~~l~~ir~aD~Il~Vv-D~~ 127 (396)
T 2ohf_A 78 HKP--------AS--K---IPAFLNVVDIAGLVKGAHN------GQGLGNAFLSHISACDGIFHLT-RAF 127 (396)
T ss_dssp HCC--------SE--E---ECCEEEEEECCC-----------------CCHHHHHHHTSSSEEEEE-EC-
T ss_pred cCc--------cc--c---cccccEEEECCCcccccch------hhHHHHHHHHHHHhcCeEEEEE-ecC
Confidence 000 00 0 0135899999999875432 2223335678899999877755 443
No 185
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.60 E-value=9.9e-09 Score=108.11 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|+++|.+|+|||||+|+|+|.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 47999999999999999999987
No 186
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.60 E-value=1.9e-08 Score=100.36 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.2
Q ss_pred CCCCeEEEECCC---------CCCHHHHHHHhhCC
Q 006928 33 EALPSVAVVGGQ---------SSGKSSVLESVVGR 58 (625)
Q Consensus 33 ~~lP~IvvvG~~---------saGKSSllnaL~g~ 58 (625)
.....|+|||++ |+|||||+|+|++.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 355689999999 99999999999994
No 187
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.59 E-value=1.7e-07 Score=97.58 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
+.+.|+++|.+|+||||++|+|+|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 188
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.58 E-value=6.2e-08 Score=110.17 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=46.8
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
...++||||||..+. ...+..+++.+|.+|+++.+. .....+.. ...+.+...+.+.++|+||+|
T Consensus 76 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~ilVvDa~-~g~~~~t~-~~~~~~~~~~~p~ivviNKiD 140 (691)
T 1dar_A 76 DHRINIIDTPGHVDF-------------TIEVERSMRVLDGAIVVFDSS-QGVEPQSE-TVWRQAEKYKVPRIAFANKMD 140 (691)
T ss_dssp TEEEEEECCCSSTTC-------------HHHHHHHHHHCSEEEEEEETT-TCSCHHHH-HHHHHHHHTTCCEEEEEECTT
T ss_pred CeEEEEEECcCccch-------------HHHHHHHHHHCCEEEEEEECC-CCcchhhH-HHHHHHHHcCCCEEEEEECCC
Confidence 467999999997531 445678888999887766544 33333222 233333345789999999999
Q ss_pred ccCc
Q 006928 215 LMDK 218 (625)
Q Consensus 215 ~~~~ 218 (625)
+...
T Consensus 141 ~~~~ 144 (691)
T 1dar_A 141 KTGA 144 (691)
T ss_dssp STTC
T ss_pred cccC
Confidence 9854
No 189
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.58 E-value=2.4e-07 Score=105.50 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=46.9
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
..++||||||..+ +...+..+++.+|.+|+++. ++.....+. ..+.+.+...+.+.++|+||+|+
T Consensus 82 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD~aIlVvD-a~~gv~~qt-~~~~~~~~~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 82 HRINIIDTPGHVD-------------FTIEVERSMRVLDGAVMVYC-AVGGVQPQS-ETVWRQANKYKVPRIAFVNKMDR 146 (704)
T ss_pred eeEEEEeCCCccc-------------hHHHHHHHHHHCCEEEEEEe-CCCCCcHHH-HHHHHHHHHcCCCEEEEEeCCCc
Confidence 6799999999643 24456778889998877655 444433222 22344444567899999999998
Q ss_pred cCc
Q 006928 216 MDK 218 (625)
Q Consensus 216 ~~~ 218 (625)
...
T Consensus 147 ~~~ 149 (704)
T 2rdo_7 147 MGA 149 (704)
T ss_pred ccc
Confidence 764
No 190
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.58 E-value=6.5e-08 Score=98.97 Aligned_cols=81 Identities=20% Similarity=0.355 Sum_probs=42.6
Q ss_pred CCcEEEeCCCCcccCCC-CCCccHHHHHHHHHHHhhcC-------------CCEEEEEEecCCCccccHHHHHHHHHhCC
Q 006928 136 VNLTLIDLPGLTKVAVE-GQPESIVEDIENMVRSYVEK-------------PSCIILAISPANQDIATSDAIKLAREVDP 201 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~-~q~~~~~~~i~~~v~~yi~~-------------~~~iIl~v~~a~~d~~~~~~l~l~~~~d~ 201 (625)
..++++||||+...... ..-..+...+......|+.. ++++++++.|....+...+ .++++.+.+
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~-~~~l~~l~~ 154 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-VAFMKAIHN 154 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH-HHHHHHHTT
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH-HHHHHHHHh
Confidence 57899999998543211 01122333333333455432 3345555555443354444 356677754
Q ss_pred CCCceEEEeccCcccCc
Q 006928 202 TGERTFGVLTKLDLMDK 218 (625)
Q Consensus 202 ~~~rti~VltK~D~~~~ 218 (625)
..++++|+||.|+...
T Consensus 155 -~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 155 -KVNIVPVIAKADTLTL 170 (301)
T ss_dssp -TSCEEEEECCGGGSCH
T ss_pred -cCCEEEEEEeCCCCCH
Confidence 5689999999999864
No 191
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.56 E-value=3.4e-09 Score=118.35 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=32.5
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC----cc----ccHHHHHHHHHhCCCCCc-e
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ----DI----ATSDAIKLAREVDPTGER-T 206 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~----d~----~~~~~l~l~~~~d~~~~r-t 206 (625)
..++||||||..+.... +..++..+|++||+|..... ++ .+...+.++.. .+.+ +
T Consensus 255 ~~i~iiDTPGh~~f~~~-------------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~i 318 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISG-------------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEI 318 (592)
T ss_dssp ----CCEEESSSEEEEE-------------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCE
T ss_pred eEEEEEECCChHHHHHH-------------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeE
Confidence 67999999996542211 23456779988776654321 12 22333434444 3555 8
Q ss_pred EEEeccCcccC
Q 006928 207 FGVLTKLDLMD 217 (625)
Q Consensus 207 i~VltK~D~~~ 217 (625)
|+|+||+|+.+
T Consensus 319 IvviNKiDl~~ 329 (592)
T 3mca_A 319 VVSVNKLDLMS 329 (592)
T ss_dssp EEEEECGGGGT
T ss_pred EEEEecccccc
Confidence 89999999986
No 192
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.55 E-value=5.2e-08 Score=113.18 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=46.6
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
...+.||||||..+. ...+..+++.+|++|+++ ++......+.. .+.+.+...+.+.|+|+||+|
T Consensus 97 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVv-Da~~g~~~qt~-~~~~~~~~~~~p~ilviNK~D 161 (842)
T 1n0u_A 97 SFLINLIDSPGHVDF-------------SSEVTAALRVTDGALVVV-DTIEGVCVQTE-TVLRQALGERIKPVVVINKVD 161 (842)
T ss_dssp EEEEEEECCCCCCSS-------------CHHHHHHHHTCSEEEEEE-ETTTBSCHHHH-HHHHHHHHTTCEEEEEEECHH
T ss_pred CceEEEEECcCchhh-------------HHHHHHHHHhCCEEEEEE-eCCCCCCHHHH-HHHHHHHHcCCCeEEEEECCC
Confidence 356899999997653 234678889999887755 45444443332 233344445789999999999
Q ss_pred ccC
Q 006928 215 LMD 217 (625)
Q Consensus 215 ~~~ 217 (625)
+..
T Consensus 162 ~~~ 164 (842)
T 1n0u_A 162 RAL 164 (842)
T ss_dssp HHH
T ss_pred cch
Confidence 873
No 193
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.54 E-value=1.2e-07 Score=102.08 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=43.6
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-------cccH--HHHHHHHHhCCCCC-
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-------IATS--DAIKLAREVDPTGE- 204 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-------~~~~--~~l~l~~~~d~~~~- 204 (625)
...++||||||..+ +......++..+|++||++...+ + +..+ +.+.+++. .+.
T Consensus 83 ~~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~---~~~~ 145 (435)
T 1jny_A 83 KYFFTIIDAPGHRD-------------FVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT---MGLD 145 (435)
T ss_dssp SCEEEECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH---TTCT
T ss_pred CeEEEEEECCCcHH-------------HHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH---cCCC
Confidence 35799999999543 13446678899998888665443 3 2222 22223333 344
Q ss_pred ceEEEeccCcccCc
Q 006928 205 RTFGVLTKLDLMDK 218 (625)
Q Consensus 205 rti~VltK~D~~~~ 218 (625)
+.|+|+||+|+.+.
T Consensus 146 ~iivviNK~Dl~~~ 159 (435)
T 1jny_A 146 QLIVAVNKMDLTEP 159 (435)
T ss_dssp TCEEEEECGGGSSS
T ss_pred eEEEEEEcccCCCc
Confidence 58899999999873
No 194
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.52 E-value=1.8e-07 Score=93.97 Aligned_cols=82 Identities=22% Similarity=0.393 Sum_probs=51.0
Q ss_pred CCcEEEeCCCCcccCCCCCC-ccHHHHHHHHHHHhh--------------cCCCEEEEEEecCCCccccHHHHHHHHHhC
Q 006928 136 VNLTLIDLPGLTKVAVEGQP-ESIVEDIENMVRSYV--------------EKPSCIILAISPANQDIATSDAIKLAREVD 200 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~-~~~~~~i~~~v~~yi--------------~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d 200 (625)
+.++++|+||+......... +.+.+.+......++ ..+++.++++.++...+...+ .++++.+.
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~ 138 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS 138 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH
Confidence 57899999999764433221 123333332222222 135777777777767777666 44777776
Q ss_pred CCCCceEEEeccCcccCcc
Q 006928 201 PTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 201 ~~~~rti~VltK~D~~~~~ 219 (625)
.. .++|.|+||+|.+...
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp TT-SEEEEEETTGGGSCHH
T ss_pred hc-CcEEEEEeccccCCHH
Confidence 66 8999999999998764
No 195
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.50 E-value=1.6e-07 Score=109.58 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=44.4
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc--HHHHHHHHHhCCCCCc-eEEEec
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--SDAIKLAREVDPTGER-TFGVLT 211 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~--~~~l~l~~~~d~~~~r-ti~Vlt 211 (625)
...++||||||.. .+......++..+|.+||+|. ++..... .+.+.+++. .+.| .|+|+|
T Consensus 358 ~~kI~IIDTPGHe-------------dF~~~mi~gas~AD~aILVVD-AtdGv~~QTrEhL~ll~~---lgIP~IIVVIN 420 (1289)
T 3avx_A 358 TRHYAHVDCPGHA-------------DYVKNMITGAAQMDGAILVVA-ATDGPMPQTREHILLGRQ---VGVPYIIVFLN 420 (1289)
T ss_dssp SCEEEEEECCCHH-------------HHHHHHHHTSCCCSEEEEEEE-TTTCSCTTHHHHHHHHHH---HTCSCEEEEEE
T ss_pred CEEEEEEECCChH-------------HHHHHHHHHHhhCCEEEEEEc-CCccCcHHHHHHHHHHHH---cCCCeEEEEEe
Confidence 4679999999932 234555678899998888665 4433322 234444443 3677 689999
Q ss_pred cCcccC
Q 006928 212 KLDLMD 217 (625)
Q Consensus 212 K~D~~~ 217 (625)
|+|+.+
T Consensus 421 KiDLv~ 426 (1289)
T 3avx_A 421 KCDMVD 426 (1289)
T ss_dssp CCTTCC
T ss_pred eccccc
Confidence 999986
No 196
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.50 E-value=9.3e-08 Score=100.21 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=29.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEE
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVL 75 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~ 75 (625)
..|++||.+|+|||||+|+|+|..........||..|+.-
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g 41 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG 41 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee
Confidence 4699999999999999999998753223334567777443
No 197
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.50 E-value=4.2e-08 Score=103.21 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=22.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~ 59 (625)
..|+++|.+|+|||||+|+|+|..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 479999999999999999999874
No 198
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.47 E-value=3.3e-07 Score=93.87 Aligned_cols=71 Identities=14% Similarity=0.263 Sum_probs=44.1
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccH-H-HHHHH---HHhCCCCCceEEEe
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS-D-AIKLA---REVDPTGERTFGVL 210 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~-~-~l~l~---~~~d~~~~rti~Vl 210 (625)
..+.||||||--+.... .+ +...|.++++++|++++..+. +... . +..+. +...| +.+.++|.
T Consensus 46 v~LqIWDTAGQErf~~~----~l------~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~-~ipillvg 113 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFEP----SY------DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNP-SINIEVLI 113 (331)
T ss_dssp SCEEEEECCSCSSSCCC----SH------HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCT-TCEEEEEC
T ss_pred EEEEEEECCCchhccch----hh------hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCC-CCcEEEEE
Confidence 67999999994432100 00 356789999998886654433 2221 1 11222 23344 68999999
Q ss_pred ccCcccCc
Q 006928 211 TKLDLMDK 218 (625)
Q Consensus 211 tK~D~~~~ 218 (625)
||+|+.+.
T Consensus 114 NK~DL~~~ 121 (331)
T 3r7w_B 114 HKVDGLSE 121 (331)
T ss_dssp CCCCSSCS
T ss_pred ECcccCch
Confidence 99999864
No 199
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.47 E-value=8e-08 Score=104.42 Aligned_cols=66 Identities=24% Similarity=0.255 Sum_probs=38.0
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc---------ccHHHHHHHHHhCCCCCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---------ATSDAIKLAREVDPTGER 205 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~---------~~~~~l~l~~~~d~~~~r 205 (625)
...++||||||..+ +......++..+|++||+|. ++... .+.+.+.++.. .+.+
T Consensus 120 ~~~~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvD-a~~g~~e~sf~~~~qt~e~l~~~~~---~~vp 182 (467)
T 1r5b_A 120 HRRFSLLDAPGHKG-------------YVTNMINGASQADIGVLVIS-ARRGEFEAGFERGGQTREHAVLART---QGIN 182 (467)
T ss_dssp SEEEEECCCCC------------------------TTSCSEEEEEEE-CSTTHHHHTTSTTCCHHHHHHHHHH---TTCS
T ss_pred CeEEEEEECCCcHH-------------HHHHHHhhcccCCEEEEEEe-CCcCccccccCCCCcHHHHHHHHHH---cCCC
Confidence 35789999999432 23334567789998888664 44332 22333334433 4566
Q ss_pred -eEEEeccCcccC
Q 006928 206 -TFGVLTKLDLMD 217 (625)
Q Consensus 206 -ti~VltK~D~~~ 217 (625)
.|+|+||+|+.+
T Consensus 183 ~iivviNK~Dl~~ 195 (467)
T 1r5b_A 183 HLVVVINKMDEPS 195 (467)
T ss_dssp SEEEEEECTTSTT
T ss_pred EEEEEEECccCCC
Confidence 899999999965
No 200
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.42 E-value=2.3e-06 Score=88.74 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
.-..++++|.+|||||||+|+|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3557999999999999999999975
No 201
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.42 E-value=4.2e-07 Score=98.85 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=44.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEeccCc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLTKLD 214 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D 214 (625)
.++.||||||..... ..+...+.... .++ .+|.++++| ++..... +...++.+... .+ +++|+||+|
T Consensus 184 ~DvvIIDTpG~~~~~-----~~l~~el~~~~-~~i-~pd~vllVv-Da~~g~~---~~~~a~~~~~~-~~i~gvVlNK~D 251 (504)
T 2j37_W 184 FEIIIVDTSGRHKQE-----DSLFEEMLQVA-NAI-QPDNIVYVM-DASIGQA---CEAQAKAFKDK-VDVASVIVTKLD 251 (504)
T ss_dssp CCEEEEEECCCCTTC-----HHHHHHHHHHH-HHH-CCSEEEEEE-ETTCCTT---HHHHHHHHHHH-HCCCCEEEECTT
T ss_pred CcEEEEeCCCCcccc-----hhHHHHHHHHH-hhh-cCceEEEEE-ecccccc---HHHHHHHHHhh-cCceEEEEeCCc
Confidence 689999999987521 11222222222 233 788776655 5544322 33444444332 45 589999999
Q ss_pred ccCccccHHHH
Q 006928 215 LMDKGTNALEV 225 (625)
Q Consensus 215 ~~~~~~~~~~~ 225 (625)
....+....++
T Consensus 252 ~~~~~g~~l~~ 262 (504)
T 2j37_W 252 GHAKGGGALSA 262 (504)
T ss_dssp SCCCCTHHHHH
T ss_pred cccchHHHHHH
Confidence 98665544443
No 202
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.38 E-value=3.4e-06 Score=89.91 Aligned_cols=81 Identities=23% Similarity=0.324 Sum_probs=50.1
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
.++.||||||..... ......+..+ .. +..+|.++|+ +++.. .+++...++.+.+....+.+|+||+|.
T Consensus 183 ~DvVIIDTaGrl~~d-----~~lm~el~~i-~~-~~~pd~vlLV-vDA~~---gq~a~~~a~~f~~~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHKED-----KALIEEMKQI-SN-VIHPHEVILV-IDGTI---GQQAYNQALAFKEATPIGSIIVTKLDG 251 (443)
T ss_dssp CSEEEEECCCCSSCC-----HHHHHHHHHH-HH-HHCCSEEEEE-EEGGG---GGGHHHHHHHHHHSCTTEEEEEECCSS
T ss_pred CCEEEEECCCcccch-----HHHHHHHHHH-HH-hhcCceEEEE-EeCCC---chhHHHHHHHHHhhCCCeEEEEECCCC
Confidence 789999999965421 1122222222 22 3357876664 45543 244555667776666678899999999
Q ss_pred cCccccHHHHHh
Q 006928 216 MDKGTNALEVLE 227 (625)
Q Consensus 216 ~~~~~~~~~~l~ 227 (625)
...+..+..+..
T Consensus 252 ~~~gG~~ls~~~ 263 (443)
T 3dm5_A 252 SAKGGGALSAVA 263 (443)
T ss_dssp CSSHHHHHHHHH
T ss_pred cccccHHHHHHH
Confidence 877665555544
No 203
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.35 E-value=3.3e-07 Score=96.66 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=30.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCc-ccccccccccccEE
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPLV 74 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~-lP~~~~~~Tr~p~~ 74 (625)
-..|++||.+|||||||+|+|+|..+ .......||..|+.
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~ 60 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEE 60 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeeccee
Confidence 45899999999999999999999775 23333446777743
No 204
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.34 E-value=1e-06 Score=99.77 Aligned_cols=132 Identities=20% Similarity=0.272 Sum_probs=76.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
....|+++|+.++|||||+++|++........|.+ ..+..+.++.... .
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-----------------------~~g~~~~d~~~~e--------~ 56 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-----------------------EEGTTTTDYTPEA--------K 56 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-----------------------GGTCCSSCCSHHH--------H
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-----------------------cCCcccccCCHHH--------H
Confidence 45689999999999999999999754210011111 0011112221110 0
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
.. +.++...... +.. ....+.|+||||..+. ...+..+++.+|.+++++. +......+..
T Consensus 57 ~~--giti~~~~~~--~~~-~~~~~nliDTpG~~~f-------------~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~- 116 (665)
T 2dy1_A 57 LH--RTTVRTGVAP--LLF-RGHRVFLLDAPGYGDF-------------VGEIRGALEAADAALVAVS-AEAGVQVGTE- 116 (665)
T ss_dssp HT--TSCCSCEEEE--EEE-TTEEEEEEECCCSGGG-------------HHHHHHHHHHCSEEEEEEE-TTTCSCHHHH-
T ss_pred hc--CCeEEecceE--Eee-CCEEEEEEeCCCccch-------------HHHHHHHHhhcCcEEEEEc-CCcccchhHH-
Confidence 01 1222222222 222 2357899999996431 3456788889998888666 4444433222
Q ss_pred HHHHHhCCCCCceEEEeccCccc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLM 216 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~ 216 (625)
.+.+.+...+.+.|+|+||+|+.
T Consensus 117 ~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 117 RAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHccCCEEEEecCCchh
Confidence 23344444578999999999997
No 205
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.34 E-value=9.3e-07 Score=88.08 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=22.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhh
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVV 56 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~ 56 (625)
-..+.++++|..|+||||++++|+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 467789999999999999999999
No 206
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.33 E-value=4.4e-07 Score=100.29 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=76.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 114 (625)
.-.|+|||...+|||||.++|+-..=.-...|.+...- ..+..+.|+..+.
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~-------------------~~~~~~~D~~~~E---------- 81 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARK-------------------AARHATSDWMAME---------- 81 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC-------------------------------------------
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCc-------------------cccccccCChHHH----------
Confidence 45799999999999999999973210000001000000 0000112222111
Q ss_pred hCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHH
Q 006928 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (625)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~ 194 (625)
..++-++....+.+.. +...+.||||||-.+... -+.+.++-+|..|++| +|..+...+...
T Consensus 82 reRGITI~s~~~~~~~---~~~~iNlIDTPGHvDF~~-------------Ev~raL~~~DgAvlVv-da~~GV~~qT~~- 143 (548)
T 3vqt_A 82 RERGISVTTSVMQFPY---RDRVVNLLDTPGHQDFSE-------------DTYRVLTAVDSALVVI-DAAKGVEAQTRK- 143 (548)
T ss_dssp ------CTTTEEEEEE---TTEEEEEECCCCGGGCSH-------------HHHHHHHSCSEEEEEE-ETTTBSCHHHHH-
T ss_pred HHCCCcEeeceEEEEE---CCEEEEEEeCCCcHHHHH-------------HHHHHHHhcCceEEEe-ecCCCcccccHH-
Confidence 0112234445555443 236799999999776532 2567778899988755 555556555433
Q ss_pred HHHHhCCCCCceEEEeccCcccCc
Q 006928 195 LAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
+.+.+...+.|.|++|||+|....
T Consensus 144 v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 144 LMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp HHHHHHHTTCCEEEEEECTTSCCC
T ss_pred HHHHHHHhCCceEEEEecccchhc
Confidence 445566678999999999998654
No 207
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.29 E-value=2.8e-06 Score=90.21 Aligned_cols=121 Identities=24% Similarity=0.270 Sum_probs=69.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
..+.++++|+.|||||||+|+|+|.. -|....+....+ . +.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~-~p~~GsI~~~g~---~----------------------------------~t- 108 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG-NEEEGAAKTGVV---E----------------------------------VT- 108 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC-TTSTTSCCCCC------------------------------------------
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC-CccCceEEECCe---e----------------------------------cc-
Confidence 35589999999999999999999974 232222211111 0 00
Q ss_pred hhCCCCccccccEEEEEecCCCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHH
Q 006928 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l 193 (625)
...+. ...+..++++++|+||+.... ....+.+..+ -+.+.+..+. .+... ...++ +
T Consensus 109 ---------~~~~v--~q~~~~~~ltv~D~~g~~~~~-----~~~~~~L~~~---~L~~~~~~~~--lS~G~-~~kqr-v 165 (413)
T 1tq4_A 109 ---------MERHP--YKHPNIPNVVFWDLPGIGSTN-----FPPDTYLEKM---KFYEYDFFII--ISATR-FKKND-I 165 (413)
T ss_dssp ---------CCCEE--EECSSCTTEEEEECCCGGGSS-----CCHHHHHHHT---TGGGCSEEEE--EESSC-CCHHH-H
T ss_pred ---------eeEEe--ccccccCCeeehHhhcccchH-----HHHHHHHHHc---CCCccCCeEE--eCCCC-ccHHH-H
Confidence 00011 112344689999999986421 1122222222 1334454433 34432 23343 3
Q ss_pred HHHHHhCCCCCceEEEeccCccc
Q 006928 194 KLAREVDPTGERTFGVLTKLDLM 216 (625)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~ 216 (625)
.+++.+...+.|+++|+||+|++
T Consensus 166 ~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 166 DIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp HHHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHHHHHhcCCCeEEEEecCccc
Confidence 47777776789999999999975
No 208
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.21 E-value=3.2e-06 Score=81.81 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|.|+++|.+|||||||+++|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999975
No 209
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.20 E-value=8.5e-07 Score=101.29 Aligned_cols=137 Identities=12% Similarity=0.162 Sum_probs=77.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCcccccccccccccEEEEEeecCCCCcceeeccCCCCccCChHHHHHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 113 (625)
++-.|+|||.-.+|||||.++|+-.. |... ..-.+. .+..+.|+.... .
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~------g~i~-~~g~v~----------------~~~~~~D~~~~E------~-- 60 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYT------GVNH-KLGEVH----------------DGAATTDWMVQE------Q-- 60 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHH------HHHH-HC-----------------------------------------
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhc------CCCC-cCceec----------------CCCccCCChHHH------H--
Confidence 35579999999999999999997321 2111 110000 011122222211 0
Q ss_pred hhCCCCccccccEEEEEecCC----CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc
Q 006928 114 ITGKSKQISNIPIQLSIYSPN----VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT 189 (625)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~~~----~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~ 189 (625)
.++-++....+.+...+.. ...+.||||||-.+.. .-+...++-+|..|++| +|..+...
T Consensus 61 --eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~-------------~Ev~~aLr~~DgavlvV-DaveGV~~ 124 (709)
T 4fn5_A 61 --ERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFT-------------IEVERSLRVLDGAVVVF-CGTSGVEP 124 (709)
T ss_dssp ---------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCH-------------HHHHHHHHHCSEEEEEE-ETTTCSCH
T ss_pred --HcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccH-------------HHHHHHHHHhCeEEEEE-ECCCCCch
Confidence 1223344566666554432 3568999999966542 23566677799888755 55555655
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 190 SDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
+... +.+++...+.|.|+||||+|....
T Consensus 125 qT~~-v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 125 QSET-VWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp HHHH-HHHHHHHHTCCEEEEEECSSSTTC
T ss_pred hHHH-HHHHHHHcCCCeEEEEccccccCc
Confidence 5433 556666668999999999998643
No 210
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.18 E-value=4e-06 Score=89.35 Aligned_cols=84 Identities=24% Similarity=0.353 Sum_probs=48.2
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
.+++.||||||...... .......+..+ ...+ .++.++|++. +... +++...++.+.+....+.+|+||+|
T Consensus 179 ~~DvvIIDTaGr~~~~~---d~~lm~el~~i-~~~~-~pd~vlLVlD-a~~g---q~a~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGE---ETKLLEEMKEM-YDVL-KPDDVILVID-ASIG---QKAYDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp TCSEEEEEECCCSSSCC---TTHHHHHHHHH-HHHH-CCSEEEEEEE-GGGG---GGGHHHHHHHHHHCSSEEEEEECGG
T ss_pred CCCEEEEECCCCccccC---CHHHHHHHHHH-HHhh-CCcceEEEEe-Cccc---hHHHHHHHHHhcccCCcEEEEeccc
Confidence 47899999999654111 11123333332 2233 5676666554 4432 3444455555544456889999999
Q ss_pred ccCccccHHHHHh
Q 006928 215 LMDKGTNALEVLE 227 (625)
Q Consensus 215 ~~~~~~~~~~~l~ 227 (625)
....+..+..+..
T Consensus 250 ~~a~~G~als~~~ 262 (433)
T 3kl4_A 250 GTAKGGGALSAVV 262 (433)
T ss_dssp GCSCHHHHHHHHH
T ss_pred ccccchHHHHHHH
Confidence 9876655555443
No 211
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.13 E-value=2.4e-06 Score=86.30 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=23.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
-.+|++||.+|+|||||+|+|+|...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 45899999999999999999999875
No 212
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.12 E-value=1.1e-06 Score=99.11 Aligned_cols=70 Identities=20% Similarity=0.203 Sum_probs=49.2
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
...++||||||-.+. ..-+.+.++-+|..|++| +|..+...+.. .+.+.+...+.|.|+++||+|
T Consensus 66 ~~~iNlIDTPGH~DF-------------~~Ev~raL~~~DgavlVV-Da~~GV~~qT~-~v~~~a~~~~lp~i~~INKmD 130 (638)
T 3j25_A 66 NTKVNIIDTPGHMDF-------------LAEVYRSLSVLDGAILLI-SAKDGVQAQTR-ILFHALRKMGIPTIFFINKID 130 (638)
T ss_dssp SCBCCCEECCCSSST-------------HHHHHHHHTTCSEEECCE-ESSCTTCSHHH-HHHHHHHHHTCSCEECCEECC
T ss_pred CEEEEEEECCCcHHH-------------HHHHHHHHHHhCEEEEEE-eCCCCCcHHHH-HHHHHHHHcCCCeEEEEeccc
Confidence 367999999996653 233567778899887755 55556655543 244555556889999999999
Q ss_pred ccCcc
Q 006928 215 LMDKG 219 (625)
Q Consensus 215 ~~~~~ 219 (625)
.....
T Consensus 131 r~~a~ 135 (638)
T 3j25_A 131 QNGID 135 (638)
T ss_dssp SSSCC
T ss_pred cccCC
Confidence 86543
No 213
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.11 E-value=4.6e-06 Score=92.26 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
..+.|+|||.+|+|||||+|+|+|...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 567899999999999999999999864
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.06 E-value=1.4e-05 Score=85.60 Aligned_cols=78 Identities=27% Similarity=0.259 Sum_probs=45.7
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHH-HhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCC-c-eEEEec
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVR-SYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGE-R-TFGVLT 211 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~-~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~-r-ti~Vlt 211 (625)
..++.||||||.... ....+..+.. ..+..+|.+++++ ++... +++...++.+.+. . + +.+|+|
T Consensus 180 ~~D~vIIDT~G~~~~--------~~~l~~~l~~i~~~~~~d~vllVv-da~~g---~~~~~~~~~~~~~-~~~i~gvVln 246 (432)
T 2v3c_C 180 KADVLIIDTAGRHKE--------EKGLLEEMKQIKEITNPDEIILVI-DGTIG---QQAGIQAKAFKEA-VGEIGSIIVT 246 (432)
T ss_dssp SCSEEEEECCCSCSS--------HHHHHHHHHHTTSSSCCSEEEEEE-EGGGG---GGHHHHHHHHHTT-SCSCEEEEEE
T ss_pred CCCEEEEcCCCCccc--------cHHHHHHHHHHHHHhcCcceeEEe-ecccc---HHHHHHHHHHhhc-ccCCeEEEEe
Confidence 468999999997642 1222233311 1223688766644 44433 2444555655543 3 4 889999
Q ss_pred cCcccCccccHHHH
Q 006928 212 KLDLMDKGTNALEV 225 (625)
Q Consensus 212 K~D~~~~~~~~~~~ 225 (625)
|+|....+.....+
T Consensus 247 K~D~~~~~g~~l~~ 260 (432)
T 2v3c_C 247 KLDGSAKGGGALSA 260 (432)
T ss_dssp CSSSCSTTHHHHHH
T ss_pred CCCCccchHHHHHH
Confidence 99987665444444
No 215
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.89 E-value=9e-06 Score=81.19 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=23.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
..+++||.+|+|||||+|+|+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6899999999999999999999865
No 216
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.86 E-value=5.2e-05 Score=77.28 Aligned_cols=87 Identities=18% Similarity=0.222 Sum_probs=49.5
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
.++.++||+|...... ....++.++-..+.+..+..|+.++|+++ +.. ..+....++.+......+++++||.|.
T Consensus 185 ~d~~llDt~G~~~~~~-~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t---~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKH-NLMEELKKVKRAIAKADPEEPKEVWLVLD-AVT---GQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp CSEEEECCCCCCTTCH-HHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTB---CTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred CCEEEecCCCCCCchH-HHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHH---HHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4578999999754321 11222332223334455567886666554 432 234444444443323468999999998
Q ss_pred cCccccHHHHHh
Q 006928 216 MDKGTNALEVLE 227 (625)
Q Consensus 216 ~~~~~~~~~~l~ 227 (625)
...+..+..+..
T Consensus 260 ~a~gg~~l~i~~ 271 (304)
T 1rj9_A 260 TAKGGVLIPIVR 271 (304)
T ss_dssp SCCCTTHHHHHH
T ss_pred cccccHHHHHHH
Confidence 877766665543
No 217
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.81 E-value=1.7e-05 Score=76.94 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=23.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~ 59 (625)
..|.|+|+|.+|+|||||+++|++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999999764
No 218
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.76 E-value=0.00022 Score=76.67 Aligned_cols=83 Identities=23% Similarity=0.315 Sum_probs=48.7
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHH---HHHhh-cCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEec
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENM---VRSYV-EKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLT 211 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~---v~~yi-~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~Vlt 211 (625)
.++.||||+|...... .....+..+ ++.+. ..++.++|++. +.. .++++..++.+...-.-+.+|+|
T Consensus 376 ~DvVLIDTaGrl~~~~-----~lm~EL~kiv~iar~l~~~~P~evLLvLD-att---Gq~al~~ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKS-----HLMEELKKIVRVMKKLDVEAPHEVMLTID-AST---GQNAVSQAKLFHEAVGLTGITLT 446 (503)
T ss_dssp CSEEEECCCCSCCCHH-----HHHHHHHHHHHHHHTTCTTCSSEEEEEEE-GGG---THHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEeCCCccchhh-----hHHHHHHHHHHHHHHhccCCCCeeEEEec-Ccc---cHHHHHHHHHHHhhcCCCEEEEE
Confidence 5789999999754321 122222222 22222 24666666554 432 34555566665543356789999
Q ss_pred cCcccCccccHHHHHh
Q 006928 212 KLDLMDKGTNALEVLE 227 (625)
Q Consensus 212 K~D~~~~~~~~~~~l~ 227 (625)
|+|-...+..+..++.
T Consensus 447 KLD~takgG~~lsi~~ 462 (503)
T 2yhs_A 447 KLDGTAKGGVIFSVAD 462 (503)
T ss_dssp CGGGCSCCTHHHHHHH
T ss_pred cCCCcccccHHHHHHH
Confidence 9998777777777654
No 219
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.75 E-value=0.00014 Score=74.97 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=49.8
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
.++.++||+|....... ....+..+.+.. .+|-.++++++.. .+++...++.+.....-+++|+||.|.
T Consensus 212 ~d~vliDtaG~~~~~~~-----l~~eL~~i~ral--~~de~llvLDa~t----~~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRN-----LMDEMKKIARVT--KPNLVIFVGDALA----GNAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp CSEEEEEECCSCCTTTC-----HHHHHHHHHHHH--CCSEEEEEEEGGG----TTHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred chhhHHhhccchhHHHH-----HHHHHHHHHHHh--cCCCCEEEEecHH----HHHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 46789999998643222 344444433322 3676666555433 356666777665444678999999998
Q ss_pred cCccccHHHHHh
Q 006928 216 MDKGTNALEVLE 227 (625)
Q Consensus 216 ~~~~~~~~~~l~ 227 (625)
...+.....++.
T Consensus 281 ~a~~G~~l~~~~ 292 (328)
T 3e70_C 281 DARGGAALSISY 292 (328)
T ss_dssp CSCCHHHHHHHH
T ss_pred ccchhHHHHHHH
Confidence 766665555543
No 220
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.67 E-value=0.00016 Score=73.47 Aligned_cols=81 Identities=25% Similarity=0.381 Sum_probs=45.4
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEeccCc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLTKLD 214 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D 214 (625)
.++.||||||....... +.....+..+ ..+..+|.+++++. +.. .+++...++.+.+ ..+ +.+|+||+|
T Consensus 181 ~D~ViIDTpg~~~~~~~---~~l~~el~~i--~~~~~~d~vllVvd-a~~---g~~~~~~~~~~~~-~~~i~gvVlnk~D 250 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEE---AALLEEMKNI--YEAIKPDEVTLVID-ASI---GQKAYDLASKFNQ-ASKIGTIIITKMD 250 (297)
T ss_dssp CSEEEEECCCSCCTTCH---HHHHHHHHHH--HHHHCCSEEEEEEE-GGG---GGGHHHHHHHHHH-TCTTEEEEEECGG
T ss_pred CCEEEEeCCCCcccccH---HHHHHHHHHH--HHHhcCCEEEEEee-CCc---hHHHHHHHHHHHh-hCCCCEEEEeCCC
Confidence 68999999997651010 0111112221 12336887777554 432 2445555666554 345 778899999
Q ss_pred ccCccccHHHHH
Q 006928 215 LMDKGTNALEVL 226 (625)
Q Consensus 215 ~~~~~~~~~~~l 226 (625)
....+.....+.
T Consensus 251 ~~~~~g~~~~~~ 262 (297)
T 1j8m_F 251 GTAKGGGALSAV 262 (297)
T ss_dssp GCTTHHHHHHHH
T ss_pred CCcchHHHHHHH
Confidence 876655444443
No 221
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.66 E-value=0.00032 Score=71.16 Aligned_cols=79 Identities=13% Similarity=0.163 Sum_probs=44.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhc--CCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~--~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 213 (625)
+++.|+||||..... ...+.++. ..+. .++.+++ |++++.+ ..+..++++.+... ...-+|+||.
T Consensus 183 ~dlvIiDT~G~~~~~--------~~~~~el~-~~l~~~~~~~~~l-Vl~at~~--~~~~~~~~~~~~~l-~~~giVltk~ 249 (296)
T 2px0_A 183 YDHVFVDTAGRNFKD--------PQYIDELK-ETIPFESSIQSFL-VLSATAK--YEDMKHIVKRFSSV-PVNQYIFTKI 249 (296)
T ss_dssp SSEEEEECCCCCTTS--------HHHHHHHH-HHSCCCTTEEEEE-EEETTBC--HHHHHHHTTTTSSS-CCCEEEEECT
T ss_pred CCEEEEeCCCCChhh--------HHHHHHHH-HHHhhcCCCeEEE-EEECCCC--HHHHHHHHHHHhcC-CCCEEEEeCC
Confidence 789999999976421 22233332 2333 3555444 5555532 23444455544432 2355678999
Q ss_pred cccCccccHHHHHh
Q 006928 214 DLMDKGTNALEVLE 227 (625)
Q Consensus 214 D~~~~~~~~~~~l~ 227 (625)
|....+..+..++.
T Consensus 250 D~~~~~g~~~~~~~ 263 (296)
T 2px0_A 250 DETTSLGSVFNILA 263 (296)
T ss_dssp TTCSCCHHHHHHHH
T ss_pred CcccchhHHHHHHH
Confidence 98877665666654
No 222
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.64 E-value=5.3e-05 Score=77.23 Aligned_cols=83 Identities=23% Similarity=0.307 Sum_probs=46.5
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhh-----cCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEE
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV-----EKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGV 209 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi-----~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~V 209 (625)
.+++.|+||||..... ..+.+.+..+ ...+ ..++.+++++ ++.. .+++++.++.+...-.-+-+|
T Consensus 186 ~~dvvIiDtpg~~~~~-----~~l~~eL~~l-~~~i~~~i~~~p~~vllVl-da~t---~~~~l~~a~~~~~~~~i~gvV 255 (306)
T 1vma_A 186 NKDVVIIDTAGRLHTK-----KNLMEELRKV-HRVVKKKIPDAPHETLLVI-DATT---GQNGLVQAKIFKEAVNVTGII 255 (306)
T ss_dssp TCSEEEEEECCCCSCH-----HHHHHHHHHH-HHHGGGTCTTCCSEEEEEE-EGGG---HHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEECCCchhhH-----HHHHHHHHHH-HHHHhhccCCCCcEEEEEE-ECCC---CHHHHHHHHHHHhcCCCCEEE
Confidence 3789999999953211 1122222222 2222 2477666644 5542 244544455444333446678
Q ss_pred eccCcccCccccHHHHHh
Q 006928 210 LTKLDLMDKGTNALEVLE 227 (625)
Q Consensus 210 ltK~D~~~~~~~~~~~l~ 227 (625)
+||.|....+..+.++..
T Consensus 256 lTk~D~~~~gG~~l~~~~ 273 (306)
T 1vma_A 256 LTKLDGTAKGGITLAIAR 273 (306)
T ss_dssp EECGGGCSCTTHHHHHHH
T ss_pred EeCCCCccchHHHHHHHH
Confidence 999999887776666654
No 223
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.56 E-value=9.2e-05 Score=79.19 Aligned_cols=79 Identities=23% Similarity=0.242 Sum_probs=44.7
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHH-HhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVR-SYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~-~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
.++.||||||..... ...+..+.. .++..++.+++++. +... +++...++.+.+.-.-+-+|+||+|
T Consensus 184 ~D~VIIDTpG~l~~~--------~~l~~~L~~~~~~~~p~~vllVvd-a~~g---~~~~~~~~~f~~~l~i~gvVlnK~D 251 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVD--------EAMMDEIKQVHASINPVETLFVVD-AMTG---QDAANTAKAFNEALPLTGVVLTKVD 251 (433)
T ss_dssp CSEEEEECCCCCTTC--------HHHHHHHHHHHHHSCCSEEEEEEE-TTBC---TTHHHHHHHHHHHSCCCCEEEECTT
T ss_pred CCEEEEECCCccccc--------HHHHHHHHHHHHhhcCcceeEEee-cchh---HHHHHHHHHHhccCCCeEEEEecCC
Confidence 689999999965421 122222221 34557887777554 4432 3445555555432122457899999
Q ss_pred ccCccccHHHHH
Q 006928 215 LMDKGTNALEVL 226 (625)
Q Consensus 215 ~~~~~~~~~~~l 226 (625)
....+..+..+.
T Consensus 252 ~~~~~g~~l~i~ 263 (433)
T 2xxa_A 252 GDARGGAALSIR 263 (433)
T ss_dssp SSSCCTHHHHHH
T ss_pred CCccHHHHHHHH
Confidence 876654444443
No 224
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.51 E-value=2.5e-05 Score=83.46 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
..-.|+|+|.+++|||||||+|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3456999999999999999999974
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.51 E-value=0.00077 Score=69.10 Aligned_cols=84 Identities=24% Similarity=0.354 Sum_probs=46.6
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHH---HHHHhh-cCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEe
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIEN---MVRSYV-EKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVL 210 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~---~v~~yi-~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~Vl 210 (625)
..++.||||||...... .....+.. .+...+ ..+|.+++++ ++.. .++++..++.+.+.-.-+-+|+
T Consensus 191 ~yD~VIIDTpg~l~~~~-----~l~~eL~~~~~vi~~~~p~~~d~vllVl-~a~~---~~~~l~~~~~~~~~~~i~GvVl 261 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKT-----NLMAELEKMNKIIQQVEKSAPHEVLLVI-DATT---GQNGVIQAEEFSKVADVSGIIL 261 (320)
T ss_dssp TCSEEEEECCCCGGGHH-----HHHHHHHHHHHHHHTTCTTCCSEEEEEE-EGGG---THHHHHHHHHHTTTSCCCEEEE
T ss_pred CCCEEEEcCCCcccccH-----HHHHHHHHHHHHHhcccCCCCceEEEEE-ECCC---cHHHHHHHHHHhhcCCCcEEEE
Confidence 36899999999764311 01111111 111111 2477766655 4442 2555556666665434445779
Q ss_pred ccCcccCccccHHHHHh
Q 006928 211 TKLDLMDKGTNALEVLE 227 (625)
Q Consensus 211 tK~D~~~~~~~~~~~l~ 227 (625)
||+|....+..+..+..
T Consensus 262 tk~d~~~~~g~~~~~~~ 278 (320)
T 1zu4_A 262 TKMDSTSKGGIGLAIKE 278 (320)
T ss_dssp ECGGGCSCTTHHHHHHH
T ss_pred eCCCCCCchhHHHHHHH
Confidence 99998766665555543
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.36 E-value=0.00028 Score=75.04 Aligned_cols=79 Identities=29% Similarity=0.317 Sum_probs=45.4
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHH-HhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVR-SYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~-~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (625)
.++.||||||..... ...+.++.. ..+-.++.++|++. +.. .+++...++.+.+.-..+-+|+||+|
T Consensus 181 ~DvVIIDTaG~l~~d--------~~l~~el~~i~~~~~pd~vlLVvD-a~t---gq~av~~a~~f~~~l~i~GVIlTKlD 248 (425)
T 2ffh_A 181 RDLILVDTAGRLQID--------EPLMGELARLKEVLGPDEVLLVLD-AMT---GQEALSVARAFDEKVGVTGLVLTKLD 248 (425)
T ss_dssp CSEEEEECCCCSSCC--------HHHHHHHHHHHHHHCCSEEEEEEE-GGG---TTHHHHHHHHHHHHTCCCEEEEESGG
T ss_pred CCEEEEcCCCccccc--------HHHHHHHHHhhhccCCceEEEEEe-ccc---hHHHHHHHHHHHhcCCceEEEEeCcC
Confidence 689999999965431 122222211 11226787776554 432 35666666665543334667899999
Q ss_pred ccCccccHHHHH
Q 006928 215 LMDKGTNALEVL 226 (625)
Q Consensus 215 ~~~~~~~~~~~l 226 (625)
....+..+..+.
T Consensus 249 ~~~~~g~alsi~ 260 (425)
T 2ffh_A 249 GDARGGAALSAR 260 (425)
T ss_dssp GCSSCHHHHHHH
T ss_pred CcccHHHHHHHH
Confidence 876655444443
No 227
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.24 E-value=0.0011 Score=68.75 Aligned_cols=86 Identities=23% Similarity=0.277 Sum_probs=48.7
Q ss_pred CcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCccc
Q 006928 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLM 216 (625)
Q Consensus 137 ~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 216 (625)
+..++|+.|+...... .+.++.++-..+.+..+.+|+-++|+++ ++... +....++.+......+++++||.|..
T Consensus 242 d~~lldt~Gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLD-pttgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQAREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCCHH-HHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGG---GGHHHHHHHHHHTCCCEEEEESCTTC
T ss_pred HHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCC---CHHHHHHHHHHhcCCeEEEEecCccc
Confidence 4679999998643211 1122332223334445567886666666 44322 22223333332234689999999988
Q ss_pred CccccHHHHHh
Q 006928 217 DKGTNALEVLE 227 (625)
Q Consensus 217 ~~~~~~~~~l~ 227 (625)
..+.....+..
T Consensus 317 ~~gG~~lsi~~ 327 (359)
T 2og2_A 317 ARGGCVVSVVE 327 (359)
T ss_dssp SCTHHHHHHHH
T ss_pred ccccHHHHHHH
Confidence 87776666654
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.18 E-value=0.00099 Score=67.71 Aligned_cols=86 Identities=23% Similarity=0.267 Sum_probs=46.8
Q ss_pred CcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCccc
Q 006928 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLM 216 (625)
Q Consensus 137 ~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 216 (625)
+..++|+.|+...... .+.++.++-..+.+..+.+|+-++|+++ ++.... ....++.+......+++++||.|..
T Consensus 185 d~~lldt~gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD---~~~~~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLN---MLPQAREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCCHH-HHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGG---GHHHHHHHHHHTCCCEEEEECCSSC
T ss_pred cchHHhcCCCCcchhH-HHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcC---HHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 4678999998643211 1112222222223334467886666666 443332 2223333332234689999999988
Q ss_pred CccccHHHHHh
Q 006928 217 DKGTNALEVLE 227 (625)
Q Consensus 217 ~~~~~~~~~l~ 227 (625)
..+.....+..
T Consensus 260 ~~~g~~l~~~~ 270 (302)
T 3b9q_A 260 ARGGCVVSVVE 270 (302)
T ss_dssp SCTHHHHHHHH
T ss_pred CccChheehHH
Confidence 77766666554
No 229
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.96 E-value=0.0014 Score=66.46 Aligned_cols=81 Identities=27% Similarity=0.363 Sum_probs=44.6
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (625)
+++.||||||..... ......+..+.. .+ .++.+++++ ++.. ..++...++.+.+.-..+-+|+||+|.
T Consensus 181 ~D~viiDtpp~~~~d-----~~~~~~l~~~~~-~~-~~~~~~lv~-~~~~---~~~~~~~~~~~~~~~~i~givlnk~d~ 249 (295)
T 1ls1_A 181 RDLILVDTAGRLQID-----EPLMGELARLKE-VL-GPDEVLLVL-DAMT---GQEALSVARAFDEKVGVTGLVLTKLDG 249 (295)
T ss_dssp CCEEEEECCCCSSCC-----HHHHHHHHHHHH-HH-CCSEEEEEE-EGGG---THHHHHHHHHHHHHTCCCEEEEECGGG
T ss_pred CCEEEEeCCCCcccc-----HHHHHHHHHHhh-hc-CCCEEEEEE-eCCC---cHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 689999999965321 111222222222 22 577766644 4432 245555555554322234578999998
Q ss_pred cCccccHHHHHh
Q 006928 216 MDKGTNALEVLE 227 (625)
Q Consensus 216 ~~~~~~~~~~l~ 227 (625)
...+..+.++..
T Consensus 250 ~~~~g~~~~~~~ 261 (295)
T 1ls1_A 250 DARGGAALSARH 261 (295)
T ss_dssp CSSCHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 776665555543
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.24 E-value=0.0016 Score=66.16 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|.+|||||||+|+|+|..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 79999999999999999999974
No 231
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.80 E-value=0.024 Score=53.25 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=37.8
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCC--CCCceEEEeccC
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDP--TGERTFGVLTKL 213 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~--~~~rti~VltK~ 213 (625)
.++.|||+||... ..+...+..+|.+|+++.+...+......++.++.+.. .+.+..+|+|+.
T Consensus 76 yD~viiD~~~~~~---------------~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 76 YDFAIVDGAGSLS---------------VITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp SSEEEEECCSSSS---------------HHHHHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCEEEEECCCCCC---------------HHHHHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 6899999998542 12334455689877766554433111222333433321 134668899999
Q ss_pred ccc
Q 006928 214 DLM 216 (625)
Q Consensus 214 D~~ 216 (625)
|.-
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 954
No 232
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.48 E-value=0.014 Score=62.08 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=18.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVV 56 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~ 56 (625)
+-.|+|+|.+++|||+|+|.|+
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 4467899999999999999775
No 233
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.37 E-value=0.0062 Score=57.58 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=26.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCccc----cccccccccc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRDFLP----RGSGIVTRRP 72 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~~lP----~~~~~~Tr~p 72 (625)
..|+++|+.|||||||+++|.+. +| .....+||.|
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~--~~~~~~~~vs~TTR~p 58 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ--NPEKFVYPVPYTTRPP 58 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH--CTTTEECCCCEECSCC
T ss_pred CEEEEECcCCCCHHHHHHHHHhh--CCccEEeeecccccCC
Confidence 36899999999999999999975 23 2233456666
No 234
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.05 E-value=0.0085 Score=56.11 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=26.3
Q ss_pred EEEECCCCCCHHHHHHHhhCCC--ccccccccccccc
Q 006928 38 VAVVGGQSSGKSSVLESVVGRD--FLPRGSGIVTRRP 72 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~~--~lP~~~~~~Tr~p 72 (625)
|+|+|+.|||||||+++|.... -+......+||.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999998541 1233445567776
No 235
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.01 E-value=0.011 Score=59.98 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=41.3
Q ss_pred CcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCccc
Q 006928 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLM 216 (625)
Q Consensus 137 ~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 216 (625)
.+.++|| ... . ..+...|++++|++|++++..+.+........+...+...+.+.++|+||+|+.
T Consensus 64 ~~~iwD~----qer-~----------~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV----LHR-K----------NLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE----CCC-S----------CEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE----ccc-c----------ceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7899998 111 0 234457999999887765443332222222223333333478999999999997
Q ss_pred Cc
Q 006928 217 DK 218 (625)
Q Consensus 217 ~~ 218 (625)
+.
T Consensus 129 ~~ 130 (301)
T 1u0l_A 129 DE 130 (301)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 236
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.78 E-value=0.015 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|+++|+.|||||||++.|.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999986
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.75 E-value=0.012 Score=54.62 Aligned_cols=22 Identities=9% Similarity=0.508 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999985
No 238
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.72 E-value=0.015 Score=56.60 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|.|..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999999973
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.70 E-value=0.012 Score=55.52 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|.|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 240
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.66 E-value=0.016 Score=59.96 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|.+|||||||+|+|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999999974
No 241
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.64 E-value=0.015 Score=54.07 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999986
No 242
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.63 E-value=0.03 Score=58.17 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=43.4
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc---------cccHHHHHHHHHhC----C
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD---------IATSDAIKLAREVD----P 201 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d---------~~~~~~l~l~~~~d----~ 201 (625)
...+.++||||- +..+.++..|.++++++|+|+...+-| -.-.++..+...+. .
T Consensus 200 ~~~l~i~Dt~Gq-------------~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGGQ-------------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccch-------------hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 467899999993 223566778999999988877655421 11223333433332 2
Q ss_pred CCCceEEEeccCcccC
Q 006928 202 TGERTFGVLTKLDLMD 217 (625)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (625)
.+.++|+|+||+|+..
T Consensus 267 ~~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLE 282 (362)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCCEEEEEEChhhhh
Confidence 4689999999999864
No 243
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.58 E-value=0.019 Score=57.00 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999999973
No 244
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.50 E-value=0.015 Score=55.30 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|.|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999996
No 245
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.49 E-value=0.018 Score=56.82 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 246
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.49 E-value=0.019 Score=55.07 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999973
No 247
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.48 E-value=0.021 Score=55.79 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 248
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.48 E-value=0.017 Score=59.23 Aligned_cols=28 Identities=32% Similarity=0.629 Sum_probs=23.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~ 66 (625)
.++|+|+.|||||||+++|.|. +|...|
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~--~~~~~g 200 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF--IPKEER 200 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG--SCTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCCc
Confidence 5899999999999999999996 343444
No 249
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.45 E-value=0.017 Score=55.74 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999973
No 250
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.41 E-value=0.018 Score=53.55 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|.+|||||||++.|.|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4889999999999999999996
No 251
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.36 E-value=0.02 Score=59.64 Aligned_cols=28 Identities=21% Similarity=0.514 Sum_probs=23.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~ 66 (625)
.++|+|+.|||||||+++|.|. +|...|
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~--~~~~~g 204 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE--IPFDQR 204 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT--SCTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc--CCCCce
Confidence 5999999999999999999996 344444
No 252
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.35 E-value=0.021 Score=55.82 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~ 59 (625)
-.++++|+.|||||||++.|.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999973
No 253
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.33 E-value=0.021 Score=56.61 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999973
No 254
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.32 E-value=0.021 Score=55.30 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|.-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 255
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.29 E-value=0.021 Score=56.96 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|.-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999999973
No 256
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.28 E-value=0.017 Score=54.32 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|+.|||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999996
No 257
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.26 E-value=0.02 Score=62.40 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=24.6
Q ss_pred EEEECCCCCCHHHHHHHhhCCCcccccccccc
Q 006928 38 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~~~lP~~~~~~T 69 (625)
|+|+|++||||||++++|+|. +|.+.+++|
T Consensus 263 i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 899999999999999999995 455555443
No 258
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.25 E-value=0.025 Score=57.20 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||||+|.|..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 68999999999999999999975
No 259
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.21 E-value=0.018 Score=55.39 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++|+|+.|||||||++.|.|.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999996
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.20 E-value=0.017 Score=54.97 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+|+|.+|||||||++.|.|.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999986
No 261
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.19 E-value=0.023 Score=55.42 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 262
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.18 E-value=0.024 Score=55.66 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|.-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 263
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.17 E-value=0.017 Score=54.75 Aligned_cols=24 Identities=25% Similarity=0.616 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
-..|+++|.+||||||+.+.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999864
No 264
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.14 E-value=0.019 Score=53.40 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 006928 38 VAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~ 58 (625)
++++|+.|||||||++.|.|.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999986
No 265
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=94.13 E-value=0.047 Score=56.03 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=48.7
Q ss_pred CCCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC---------CccccHHHHHHHHHh----C
Q 006928 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN---------QDIATSDAIKLAREV----D 200 (625)
Q Consensus 134 ~~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~---------~d~~~~~~l~l~~~~----d 200 (625)
+...+.++||+| .+..+.++..|.++++++|+|+.-+. ..-...++..+...+ .
T Consensus 159 ~~v~l~iwDtaG-------------Qe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 159 KDIPFHLIDVGG-------------QRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp SSCEEEEEECCS-------------CHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred eeeeeccccCCC-------------cccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 346799999999 34558889999999999888775441 111112333333333 2
Q ss_pred CCCCceEEEeccCcccCc
Q 006928 201 PTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 201 ~~~~rti~VltK~D~~~~ 218 (625)
..+.++|+|+||+|+...
T Consensus 226 ~~~~piiLv~NK~DL~~e 243 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFEE 243 (340)
T ss_dssp GTTSEEEEEEECHHHHHH
T ss_pred cCCCeEEEEEECchhhhh
Confidence 246899999999998753
No 266
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.12 E-value=0.023 Score=52.53 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=22.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|.++++|..|||||||+++|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3688999999999999999999975
No 267
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.10 E-value=0.025 Score=56.07 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|.|..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57899999999999999999973
No 268
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.06 E-value=0.025 Score=55.69 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=24.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCcccccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~~~T 69 (625)
.++++|+.|||||||++.|+|.. |-.+|.++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I~ 63 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH--RPIQGKIE 63 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS--CCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEEE
Confidence 57899999999999999999973 33445443
No 269
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.05 E-value=0.021 Score=54.86 Aligned_cols=22 Identities=14% Similarity=0.486 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++|+|+.|||||||++.|.|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999995
No 270
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.00 E-value=0.027 Score=56.11 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|.-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999973
No 271
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.99 E-value=0.027 Score=55.61 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999973
No 272
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.96 E-value=0.025 Score=55.52 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999997
No 273
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.87 E-value=0.029 Score=55.66 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999973
No 274
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.80 E-value=0.031 Score=54.44 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 275
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.78 E-value=0.03 Score=55.95 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|.-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999973
No 276
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.60 E-value=0.033 Score=51.07 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.6
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.++++|..|||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 588999999999999998664
No 277
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.57 E-value=0.032 Score=55.35 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|+|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 278
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.55 E-value=0.035 Score=54.49 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|.-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999973
No 279
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.51 E-value=0.031 Score=50.77 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|.|.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999997
No 280
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=93.48 E-value=0.023 Score=58.78 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=47.2
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcc---------ccHHHHHHHHHhCC----
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---------ATSDAIKLAREVDP---- 201 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~---------~~~~~l~l~~~~d~---- 201 (625)
...+.++||+|--+ .+.++..|.++++++|+|+..++.|- .-.++..+...+..
T Consensus 192 ~~~l~iwDt~GQe~-------------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQRS-------------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSGG-------------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCchh-------------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 46789999999322 25567789999999888776554221 12344444444322
Q ss_pred CCCceEEEeccCcccC
Q 006928 202 TGERTFGVLTKLDLMD 217 (625)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (625)
.+.++|+|+||.|+..
T Consensus 259 ~~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 259 TDTSIILFLNKKDLFE 274 (353)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred cCCcEEEEEECcCchh
Confidence 4689999999999864
No 281
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.46 E-value=0.031 Score=51.00 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|.+|||||||.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999885
No 282
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.45 E-value=0.027 Score=57.05 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.+++||+.|||||||++.|.|.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999999997
No 283
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=93.42 E-value=0.053 Score=55.40 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=47.7
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecC---------CCccccHHHHHHHHHhCC----
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPA---------NQDIATSDAIKLAREVDP---- 201 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a---------~~d~~~~~~l~l~~~~d~---- 201 (625)
...+.++||.| .+..+.++..|.++++++|+|+.-. +..-.-.++..+...+..
T Consensus 166 ~v~l~iwDtgG-------------Qe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 166 SVIFRMVDVGG-------------QRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp TEEEEEEEECC-------------SHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEcCC-------------chhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 46789999999 3445777889999999988877321 111112334444444422
Q ss_pred CCCceEEEeccCcccCc
Q 006928 202 TGERTFGVLTKLDLMDK 218 (625)
Q Consensus 202 ~~~rti~VltK~D~~~~ 218 (625)
.+.++++++||+|+...
T Consensus 233 ~~~~iiL~~NK~DL~~~ 249 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEE 249 (327)
T ss_dssp TTCEEEEEEECHHHHHH
T ss_pred CCceEEEEEECchhhhh
Confidence 46889999999998753
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.39 E-value=0.032 Score=55.22 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++|+|+.||||||++++|.|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999999996
No 285
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.35 E-value=0.03 Score=53.07 Aligned_cols=22 Identities=23% Similarity=0.595 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|+.|||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999985
No 286
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.31 E-value=0.035 Score=52.21 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|.+||||||+++.|.|.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999986
No 287
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.31 E-value=0.04 Score=54.42 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|.-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999999974
No 288
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.23 E-value=0.028 Score=56.86 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=34.3
Q ss_pred HHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 165 MVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 165 ~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
+.+.|++++|.+++++...+.+++....-+++..+...+.+.++|+||+|+.+.
T Consensus 72 l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 72 LIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp EETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred HhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc
Confidence 344689999987775543333334332223333333467899999999999865
No 289
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.16 E-value=0.02 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
+.|+|+|..+||||||++.|.|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999986
No 290
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.13 E-value=0.089 Score=52.57 Aligned_cols=52 Identities=12% Similarity=0.104 Sum_probs=35.5
Q ss_pred HHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCc
Q 006928 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (625)
Q Consensus 163 ~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (625)
.+.+..+++++|.|+. |+++..+..... ..+.+.+ .+++.++|+||+|+++.
T Consensus 14 ~~~~~~~l~~aDvVl~-VvDAr~p~~~~~-~~l~~~l--~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 14 RREVTEKLKLIDIVYE-LVDARIPMSSRN-PMIEDIL--KNKPRIMLLNKADKADA 65 (282)
T ss_dssp HHHHHHHGGGCSEEEE-EEETTSTTTTSC-HHHHHHC--SSSCEEEEEECGGGSCH
T ss_pred HHHHHHHHhhCCEEEE-EEeCCCCCccCC-HHHHHHH--CCCCEEEEEECcccCCH
Confidence 5667888999997666 455655554432 1133333 46899999999999874
No 291
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.11 E-value=0.038 Score=55.88 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++|+|+.|||||||++.|.|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999999985
No 292
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.08 E-value=0.09 Score=52.76 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
...|+|+|.+|||||||.+.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999885
No 293
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.03 E-value=0.032 Score=53.21 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|+|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999997
No 294
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.02 E-value=0.04 Score=51.20 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.++++|.+||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999986
No 295
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.00 E-value=0.052 Score=52.90 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhh---CCC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVV---GRD 59 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~---g~~ 59 (625)
...|+|+|.+||||||+++.|. |..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3479999999999999999999 875
No 296
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.00 E-value=0.039 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|+++|.+|||||||++.|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999864
No 297
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.99 E-value=0.61 Score=45.20 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=39.0
Q ss_pred CCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCC---------Cce
Q 006928 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTG---------ERT 206 (625)
Q Consensus 136 ~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~---------~rt 206 (625)
.+++|||+|+-.. ..+...+..+|.+|+++.+.. .+...+..+.+.+...+ .+.
T Consensus 114 yD~viiD~p~~~~---------------~~~~~~l~~ad~vi~v~~~~~--~s~~~~~~~~~~l~~~~~~~~~~~~~~~~ 176 (260)
T 3q9l_A 114 FEFIVCDSPAGIE---------------TGALMALYFADEAIITTNPEV--SSVRDSDRILGILASKSRRAENGEEPIKE 176 (260)
T ss_dssp CSEEEEECCSSSS---------------HHHHHHHHTCSEEEEEECSSH--HHHHHHHHHHHHHTTSSHHHHTTCSCCEE
T ss_pred CCEEEEcCCCCCC---------------HHHHHHHHhCCEEEEEecCCh--hHHHHHHHHHHHHHHhccccccccCCcce
Confidence 6899999998432 123455667998777554432 22233444555555433 467
Q ss_pred EEEeccCccc
Q 006928 207 FGVLTKLDLM 216 (625)
Q Consensus 207 i~VltK~D~~ 216 (625)
.+|+|+.|.-
T Consensus 177 ~~v~N~~~~~ 186 (260)
T 3q9l_A 177 HLLLTRYNPG 186 (260)
T ss_dssp EEEEEEECHH
T ss_pred EEEEecCCcc
Confidence 7889998853
No 298
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.95 E-value=0.053 Score=49.12 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.8
Q ss_pred CeEEEECCCCCCHHHHHHHh
Q 006928 36 PSVAVVGGQSSGKSSVLESV 55 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL 55 (625)
+.|+++|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999999
No 299
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.92 E-value=0.22 Score=50.01 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=18.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVV 56 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~ 56 (625)
...|+|.|..|+||||+.-.|.
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA 62 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLS 62 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHH
Confidence 4468888999999999887765
No 300
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.73 E-value=0.055 Score=53.54 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=22.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~ 64 (625)
.++++|+.|||||||++.|+|.. |.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~--p~~ 57 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL--PYS 57 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCC
Confidence 57899999999999999999983 643
No 301
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.71 E-value=0.055 Score=49.66 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|.|+++|.+|||||||+++|.+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999874
No 302
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.64 E-value=0.056 Score=54.62 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|..|||||||+|+|. .
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-S
T ss_pred EEEEECCCCCCHHHHHHHHH-H
Confidence 68999999999999999999 5
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.61 E-value=0.049 Score=49.82 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|.+||||||+.+.|.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 6899999999999999999763
No 304
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.58 E-value=0.064 Score=48.58 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=20.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
+.|+++|.+||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999743
No 305
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.52 E-value=0.048 Score=55.44 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+|+|..|||||||++.|.|.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhh
Confidence 5889999999999999999996
No 306
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.51 E-value=0.051 Score=50.90 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|..|||||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999985
No 307
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.45 E-value=0.054 Score=49.86 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
.-...+|+|+.+||||||++||.+.
T Consensus 25 ~~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 25 SKGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp CSSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3447899999999999999999875
No 308
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.40 E-value=0.05 Score=56.34 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+|+|+.||||||++++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999996
No 309
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.40 E-value=0.11 Score=47.80 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
.-++++|++|+|||||+.+|.|.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999986
No 310
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.39 E-value=0.041 Score=53.05 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=15.1
Q ss_pred eEEEECCCCCCHHHHHHHhh-CC
Q 006928 37 SVAVVGGQSSGKSSVLESVV-GR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~-g~ 58 (625)
.|+++|+.|||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58899999999999999999 86
No 311
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.28 E-value=0.076 Score=50.66 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=23.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCccccccc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~lP~~~~ 66 (625)
.++++|+.|||||||+..|+|.-..|.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 588999999999999999999533344433
No 312
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.28 E-value=0.062 Score=53.98 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999999973
No 313
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.23 E-value=0.063 Score=51.30 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=20.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
+.|+++|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 314
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.20 E-value=0.059 Score=50.67 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|+++|..||||||+.++|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999985
No 315
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=92.13 E-value=0.07 Score=56.06 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=46.5
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCC---------ccccHHHHHHHHHhC----C
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ---------DIATSDAIKLAREVD----P 201 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~---------d~~~~~~l~l~~~~d----~ 201 (625)
...+.|+||+|--+ .+.++..|.++++++|+|+.-.+- .-.-.++..+...+. .
T Consensus 216 ~v~l~iwDtaGQe~-------------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 216 KVNFHMFDVGGQRD-------------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TEEEEEEEECCSGG-------------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred Cccceecccchhhh-------------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 36789999999322 256678899999998887765441 111223444444432 2
Q ss_pred CCCceEEEeccCcccC
Q 006928 202 TGERTFGVLTKLDLMD 217 (625)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (625)
.+.++|+|+||+|+..
T Consensus 283 ~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 283 RTISVILFLNKQDLLA 298 (402)
T ss_dssp SSCCEEEEEECHHHHH
T ss_pred CCCeEEEEEEChhhhh
Confidence 4678999999999864
No 316
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.03 E-value=1.4 Score=53.56 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|++||+.|||||||++.|.|.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999996
No 317
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.82 E-value=0.056 Score=57.20 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+|+|+.||||||+|++|+|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999996
No 318
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.81 E-value=0.081 Score=54.65 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.||||||||+.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999974
No 319
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.73 E-value=0.086 Score=51.67 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=22.5
Q ss_pred CeEEEECCCCCCHHHHHHHhh---CCCc
Q 006928 36 PSVAVVGGQSSGKSSVLESVV---GRDF 60 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~---g~~~ 60 (625)
..|+++|..||||||+++.|. |..+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 479999999999999999999 8753
No 320
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.70 E-value=0.071 Score=51.94 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|+.|||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 321
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.70 E-value=0.084 Score=54.66 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 58899999999999999999974
No 322
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.68 E-value=0.078 Score=54.81 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.||||||||+.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999999974
No 323
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.66 E-value=0.074 Score=49.93 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=20.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|+++|.+||||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 324
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.65 E-value=0.088 Score=49.53 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|..||||||+.+.|.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999999873
No 325
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.63 E-value=0.095 Score=48.92 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999863
No 326
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.60 E-value=0.088 Score=54.49 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 58899999999999999999974
No 327
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.55 E-value=0.081 Score=51.01 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+|+|..||||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999986
No 328
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.53 E-value=0.089 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999999974
No 329
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.45 E-value=0.092 Score=54.71 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 58899999999999999999974
No 330
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.45 E-value=0.094 Score=47.86 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 588999999999999999986
No 331
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.45 E-value=0.077 Score=49.82 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.|+|+|..||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999987
No 332
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.42 E-value=0.094 Score=54.60 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 58899999999999999999974
No 333
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.39 E-value=0.093 Score=49.45 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+|+|.+||||||+.+.|.+.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999999985
No 334
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.37 E-value=0.076 Score=55.37 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+|+|+.||||||++++|+|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999995
No 335
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.31 E-value=0.074 Score=47.64 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
-..++++|++|+|||||+++|.|.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999986
No 336
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.27 E-value=0.059 Score=54.90 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=23.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~ 59 (625)
..|.++|+|..||||||||+.|.|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47889999999999999999999863
No 337
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.24 E-value=0.071 Score=55.37 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++|+|..|||||||++.|.|.
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999997
No 338
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.24 E-value=0.099 Score=54.37 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.||||||||+.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999999974
No 339
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.18 E-value=0.12 Score=46.24 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVV 56 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~ 56 (625)
+-+..+|+|+.+|||||+++||.
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 33468899999999999999987
No 340
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=91.13 E-value=0.24 Score=46.97 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEecCCCcccc-HHHH-HHHHHhCC----CCCceEEEeccC-cccCccc--cHHHHHhCc
Q 006928 159 VEDIENMVRSYVEKPSCIILAISPANQDIAT-SDAI-KLAREVDP----TGERTFGVLTKL-DLMDKGT--NALEVLEGR 229 (625)
Q Consensus 159 ~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~-~~~l-~l~~~~d~----~~~rti~VltK~-D~~~~~~--~~~~~l~~~ 229 (625)
++.++.+++.|.++.|+||+||+++..+... .+.+ ++.+-+++ .+.+.++..||- |+...-+ ++.+.+.-.
T Consensus 112 Q~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~ 191 (227)
T 3l82_B 112 RYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLN 191 (227)
T ss_dssp -----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGG
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCc
Confidence 4567899999999999999988877553322 2222 12222322 467888888996 5633222 334444432
Q ss_pred ccccCCCeEE--EEeCChhhhhccCCHH
Q 006928 230 SYRLQHPWVG--IVNRSQADINKNVDMI 255 (625)
Q Consensus 230 ~~~l~~g~~~--v~~~s~~~~~~~~~~~ 255 (625)
. +...|+. +...+.+++.++++++
T Consensus 192 ~--l~R~W~Iq~csA~TGeGL~EGLdWL 217 (227)
T 3l82_B 192 L--LNHPWLVQDTEAETLTGFLNGIEWI 217 (227)
T ss_dssp G--GCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred C--CCCCEEEEEeECCCCcCHHHHHHHH
Confidence 2 3467763 3444556665555544
No 341
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.02 E-value=0.081 Score=53.58 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|..|||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999985
No 342
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.98 E-value=0.21 Score=51.29 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 6 SLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 6 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
++..+++++.+.+...-... ..|.|+++|.+|+||||+..+|.+.
T Consensus 3 ~~~~L~~~il~~l~~~i~~g--------~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDN--------YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTC--------SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccC--------CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 44455555555443322221 4678999999999999999999874
No 343
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.91 E-value=0.11 Score=47.33 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|.+||||||+.++|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999863
No 344
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.87 E-value=0.089 Score=49.51 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+|+|..||||||+++.|.+.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 345
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.84 E-value=0.11 Score=48.74 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=20.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
..|+++|.+||||||+..+|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999984
No 346
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.84 E-value=0.42 Score=45.94 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=36.8
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCcccc-HHHHHHHHHhCCCCCceEEEeccC
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT-SDAIKLAREVDPTGERTFGVLTKL 213 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~-~~~l~l~~~~d~~~~rti~VltK~ 213 (625)
..+++|||+|+-.... +...+..+|.+|+++.+...++.. ....++.+.+.. .+..+|+||.
T Consensus 131 ~yD~viiD~pp~~~~~---------------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~--~~~~~v~N~~ 193 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEHL---------------TRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGI--KKVRYVINKV 193 (254)
T ss_dssp CCSEEEEEECTTCTTC---------------CHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTC--SCEEEEEEEE
T ss_pred CCCEEEEeCCCcccHH---------------HHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCC--ccEEEEEeCC
Confidence 4789999998854321 234567789877766543322221 112223344332 4577899999
Q ss_pred c
Q 006928 214 D 214 (625)
Q Consensus 214 D 214 (625)
+
T Consensus 194 ~ 194 (254)
T 3kjh_A 194 R 194 (254)
T ss_dssp C
T ss_pred C
Confidence 8
No 347
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.75 E-value=0.11 Score=48.05 Aligned_cols=21 Identities=38% Similarity=0.330 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 348
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.72 E-value=0.1 Score=50.52 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.++++|+.|||||||+..|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 588999999999999999994
No 349
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.67 E-value=0.083 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.||||||||+.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 58899999999999999999974
No 350
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.64 E-value=0.14 Score=47.11 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhh
Q 006928 35 LPSVAVVGGQSSGKSSVLESVV 56 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~ 56 (625)
.+.|+++|.+||||||+...|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999996
No 351
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.60 E-value=0.12 Score=47.52 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.|++.|.+||||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
No 352
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.54 E-value=0.12 Score=53.77 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=21.2
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhC
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g 57 (625)
+..+..+|+|+.||||||+|++|+.
T Consensus 21 ~~~g~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 21 FQSGITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3445688999999999999999983
No 353
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.49 E-value=0.12 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.||||||||+.|.|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999999963
No 354
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.39 E-value=0.1 Score=55.94 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=22.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~ 59 (625)
=+.++|+|+.|||||||++.|.|.-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3689999999999999999999973
No 355
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=90.35 E-value=0.064 Score=55.47 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=44.3
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCC--------Ccc-ccHHHHHHHHHhC----C
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN--------QDI-ATSDAIKLAREVD----P 201 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~--------~d~-~~~~~l~l~~~~d----~ 201 (625)
...+.++||+|--+ .+.+...|.++++++|+|+.-.. .+. .-.++..+...+. .
T Consensus 182 ~v~l~iwDtaGQe~-------------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRN-------------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTT-------------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchh-------------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 45789999999322 25567789999999888765330 011 1123333444332 2
Q ss_pred CCCceEEEeccCcccC
Q 006928 202 TGERTFGVLTKLDLMD 217 (625)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (625)
.+.++|+|.||+|+..
T Consensus 249 ~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFE 264 (354)
T ss_dssp SSCEEEEEEECHHHHH
T ss_pred CCCeEEEEEECcchhh
Confidence 4688999999999864
No 356
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.34 E-value=0.15 Score=47.05 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
-+.|+++|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999754
No 357
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.28 E-value=0.14 Score=47.17 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
|.|+++|.+||||||+-..|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998853
No 358
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.24 E-value=0.14 Score=46.69 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
+.|+++|.+||||||+..+|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 359
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.18 E-value=1.4 Score=46.55 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.5
Q ss_pred CCCe-EEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPS-VAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~-IvvvG~~saGKSSllnaL~g~ 58 (625)
..|+ |.+.|+||+|||++..||.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4554 899999999999999999864
No 360
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.12 E-value=0.12 Score=52.63 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|++|||||||++.|.|.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 361
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.04 E-value=0.14 Score=47.39 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999964
No 362
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.00 E-value=0.17 Score=46.40 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVV 56 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~ 56 (625)
..+.|+++|.+||||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34679999999999999999998
No 363
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.98 E-value=0.084 Score=54.57 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.||||||||+.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999974
No 364
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.96 E-value=0.15 Score=46.85 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 006928 37 SVAVVGGQSSGKSSVLESVV 56 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~ 56 (625)
.|+++|.+||||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 365
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.94 E-value=0.93 Score=52.78 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=17.9
Q ss_pred eEEEECCCCCCHHHHHHHh
Q 006928 37 SVAVVGGQSSGKSSVLESV 55 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL 55 (625)
.++++|+.++||||+|..+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5888999999999999999
No 366
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=89.81 E-value=0.17 Score=51.08 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=34.5
Q ss_pred HhhcCCCEEEEEEecCC-CccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 168 SYVEKPSCIILAISPAN-QDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 168 ~yi~~~~~iIl~v~~a~-~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
..+.+.|.+++ |+++. .++.....-+++..+...+.+.++|+||+|+.+..
T Consensus 82 ~~~anvD~v~~-V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 82 PPICNVDQAVL-VFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TTEECCCEEEE-EEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred HHHHhCCEEEE-EEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 46789997666 45555 34444433334444445689999999999999763
No 367
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.73 E-value=0.16 Score=47.63 Aligned_cols=23 Identities=30% Similarity=0.195 Sum_probs=20.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|++.|.+||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 368
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.73 E-value=0.13 Score=55.22 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
-.++++|+.|||||||+++|.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 35899999999999999999996
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.68 E-value=0.18 Score=46.65 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g 57 (625)
.+.|+++|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999973
No 370
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.66 E-value=0.18 Score=47.76 Aligned_cols=21 Identities=19% Similarity=0.465 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.|+|+|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999953
No 371
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.63 E-value=0.18 Score=46.99 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|+++|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
No 372
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.56 E-value=0.36 Score=48.19 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.|+++|.+||||||+..+|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478889999999999999975
No 373
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.52 E-value=0.15 Score=56.42 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.+++||+.|||||||++.|.|.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999997
No 374
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.44 E-value=0.15 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|..+|||||+.+.|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 375
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.43 E-value=0.15 Score=50.71 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 006928 38 VAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~ 58 (625)
++++|++|+|||||+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999985
No 376
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.37 E-value=0.19 Score=55.57 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999997
No 377
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.34 E-value=0.18 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|++.|..||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 378
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.32 E-value=0.19 Score=45.51 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
+.|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999864
No 379
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.28 E-value=0.2 Score=47.48 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999963
No 380
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.25 E-value=0.17 Score=56.10 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.+++||+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 381
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.21 E-value=0.21 Score=54.68 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|..|||||||++.|+|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999973
No 382
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.16 E-value=0.18 Score=55.94 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999999997
No 383
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.14 E-value=0.16 Score=46.78 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|+++|.+||||||+.+.|.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999865
No 384
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.13 E-value=0.16 Score=49.50 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 006928 38 VAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~ 58 (625)
++++|++|+|||||+++|.|.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999985
No 385
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.04 E-value=0.25 Score=54.14 Aligned_cols=23 Identities=22% Similarity=0.539 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|..|||||||++.|+|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 386
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.84 E-value=0.24 Score=44.67 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.|++.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 387
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.83 E-value=0.27 Score=45.95 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.5
Q ss_pred CCC-eEEEECCCCCCHHHHHHHhhC
Q 006928 34 ALP-SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 34 ~lP-~IvvvG~~saGKSSllnaL~g 57 (625)
..| .|+++|.++|||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344 689999999999999999964
No 388
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.82 E-value=0.21 Score=46.34 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
+.|+++|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 389
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.82 E-value=0.17 Score=56.14 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.+++||+.|||||||++.|.|.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999997
No 390
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.81 E-value=0.21 Score=46.08 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 391
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.75 E-value=0.17 Score=56.19 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.|||||||++.|.|.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999997
No 392
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.74 E-value=0.25 Score=54.90 Aligned_cols=23 Identities=22% Similarity=0.539 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999973
No 393
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.72 E-value=0.21 Score=54.63 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|.|.-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 394
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.71 E-value=0.21 Score=46.00 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.|+++|.++|||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 395
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.65 E-value=0.095 Score=49.44 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+|+|..||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 396
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.61 E-value=0.2 Score=47.10 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
..|++.|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 397
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.61 E-value=0.19 Score=47.84 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|++|+|||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999999975
No 398
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=88.61 E-value=0.27 Score=51.07 Aligned_cols=56 Identities=11% Similarity=0.111 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 160 EDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 160 ~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+.+.++...|.+.++.+++++ ++.. .. ..+...++++-. +.+.++|+||+|+.+..
T Consensus 57 e~f~~~l~~i~~~~~~il~Vv-D~~d-~~-~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIV-DIFD-FN-GSWLPGLHRFVG-NNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEE-ETTS-HH-HHCCTTHHHHSS-SSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHHhccCcEEEEEE-ECCC-Cc-ccHHHHHHHHhC-CCcEEEEEEChhcCCcc
Confidence 456778888888888766654 5543 21 122122233322 68999999999998754
No 399
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.57 E-value=0.21 Score=49.07 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g 57 (625)
.+.|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 400
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.50 E-value=0.2 Score=47.08 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
..|+++|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999984
No 401
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.49 E-value=0.22 Score=47.59 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g 57 (625)
...|+++|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999973
No 402
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=88.33 E-value=0.26 Score=46.49 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g 57 (625)
+-+..+|+|+.+|||||+++||.-
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 445788999999999999999863
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.18 E-value=0.21 Score=48.94 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g 57 (625)
-..|+++|.+||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999975
No 404
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.18 E-value=0.23 Score=54.33 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999999973
No 405
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.17 E-value=0.35 Score=47.23 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|.+||||||+...|.+.
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999764
No 406
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=88.16 E-value=0.56 Score=48.64 Aligned_cols=56 Identities=18% Similarity=0.096 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 160 EDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 160 ~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
+.++++...|.+.++.+++++ ++.... .+-...+.+.+. +.+.++|+||+|+++..
T Consensus 59 e~f~~~L~~~~~~~~lil~Vv-D~~d~~-~s~~~~l~~~l~--~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 59 DDFLSMLHRIGESKALVVNIV-DIFDFN-GSFIPGLPRFAA--DNPILLVGNKADLLPRS 114 (369)
T ss_dssp CHHHHHHHHHHHHCCEEEEEE-ETTCSG-GGCCSSHHHHCT--TSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHhhccCcEEEEEE-ECCCCC-CchhhHHHHHhC--CCCEEEEEEChhcCCCc
Confidence 345677777878888766655 444322 111111223332 68999999999998764
No 407
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.13 E-value=0.24 Score=46.35 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
|.|++.|.+||||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 408
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.04 E-value=0.22 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
+..++++|++|+|||||+++|.|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999999999985
No 409
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.01 E-value=0.19 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++|+|++|+|||||+..|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999999986
No 410
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.99 E-value=0.28 Score=46.64 Aligned_cols=22 Identities=14% Similarity=0.290 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
..|+++|.++|||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 411
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.97 E-value=0.24 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.||||||||+.|+|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999999973
No 412
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.96 E-value=0.26 Score=46.68 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 413
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=87.85 E-value=0.24 Score=45.60 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
+.|+++|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
No 414
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.84 E-value=0.24 Score=47.16 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999973
No 415
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.82 E-value=0.22 Score=49.37 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 006928 38 VAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~ 58 (625)
|+++|++|+|||||+++|.|.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999985
No 416
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.76 E-value=0.59 Score=42.38 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
.+.++++|++|+|||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999864
No 417
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.74 E-value=0.29 Score=45.75 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g 57 (625)
...|+++|.+||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999973
No 418
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.71 E-value=0.27 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.|||||||++.|+|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58899999999999999999973
No 419
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.56 E-value=0.22 Score=45.49 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=15.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999973
No 420
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.50 E-value=0.61 Score=45.17 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
..|++.|.+||||||+...|..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999973
No 421
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.35 E-value=0.28 Score=46.48 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
..|+|+|..||||||+.+.|.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 422
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.30 E-value=0.25 Score=48.40 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+|+|.++||||||-.+|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5899999999999999999753
No 423
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.23 E-value=0.24 Score=51.53 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|++|+|||||+.+|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6889999999999999999974
No 424
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=87.17 E-value=1.2 Score=44.13 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=16.3
Q ss_pred eEEEEC---CCCCCHHHHHHHhh
Q 006928 37 SVAVVG---GQSSGKSSVLESVV 56 (625)
Q Consensus 37 ~IvvvG---~~saGKSSllnaL~ 56 (625)
.|+|++ ..|+||||+.-.|.
T Consensus 36 ~i~v~~~s~KGGvGKTT~a~nLA 58 (298)
T 2oze_A 36 AIVILNNYFKGGVGKSKLSTMFA 58 (298)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHH
T ss_pred EEEEEeccCCCCchHHHHHHHHH
Confidence 466665 89999999988776
No 425
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.00 E-value=0.27 Score=46.45 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|+++|.+||||||+...|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999874
No 426
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.98 E-value=0.28 Score=45.59 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
...|+++|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 346899999999999999999854
No 427
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=86.91 E-value=0.33 Score=46.33 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 428
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.90 E-value=0.38 Score=48.53 Aligned_cols=38 Identities=29% Similarity=0.273 Sum_probs=27.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC---c-------cccccccccccc
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGRD---F-------LPRGSGIVTRRP 72 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~~---~-------lP~~~~~~Tr~p 72 (625)
-|.|+|+|+++||||||...|...- + +-++-.+.|+.|
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp 50 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKI 50 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCC
Confidence 3568999999999999999997531 1 123445667777
No 429
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.87 E-value=0.49 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
-|+++|++|+|||+++.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 430
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=86.60 E-value=0.061 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 006928 38 VAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~~ 59 (625)
++|+|+.+||||||+++|.|.-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5789999999999999999973
No 431
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.47 E-value=0.36 Score=43.55 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=19.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g 57 (625)
.-.|++.|.+||||||+-..|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999999863
No 432
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.28 E-value=0.31 Score=45.94 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.++++|++|+|||||+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999998
No 433
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.08 E-value=0.37 Score=45.69 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
..|+++|.++|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999963
No 434
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.03 E-value=0.41 Score=45.97 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g 57 (625)
...|+++|.++|||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999974
No 435
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.03 E-value=0.31 Score=49.84 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|.++++|++|+||||++.+|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4667999999999999999999984
No 436
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.01 E-value=0.32 Score=46.65 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|++|+|||||+..|++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999999984
No 437
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.99 E-value=0.33 Score=46.93 Aligned_cols=22 Identities=41% Similarity=0.409 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
..|+++|.+||||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999983
No 438
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.71 E-value=0.39 Score=46.19 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|++.|.+||||||+++.|...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6889999999999999999875
No 439
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=85.66 E-value=0.83 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++++|+.+|||||+|+.+.+.
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 5889999999999999998754
No 440
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.64 E-value=0.32 Score=50.03 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.+||||||++.|+|..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999973
No 441
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.64 E-value=0.39 Score=53.33 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 006928 38 VAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~~ 59 (625)
++++|..|||||||++.|+|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6999999999999999999974
No 442
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=85.63 E-value=0.33 Score=50.19 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
++-...+++|+.|+||||++++|.+.
T Consensus 24 ~~~g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 24 FPEGVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred EcCCeEEEECCCCCChhHHHHHHHHh
Confidence 34456889999999999999999874
No 443
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=85.44 E-value=0.43 Score=48.82 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g 57 (625)
+-.-.+++|+.||||||+++||..
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 444678999999999999999853
No 444
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.43 E-value=0.35 Score=49.11 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
+-...+++|+.|||||||++||...
T Consensus 23 ~~g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 23 SDRVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CSSEEEEECCTTTCSTHHHHHHHHT
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHH
Confidence 4457899999999999999999854
No 445
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.39 E-value=0.63 Score=47.46 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=27.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC---c-------cccccccccccc
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRD---F-------LPRGSGIVTRRP 72 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~---~-------lP~~~~~~Tr~p 72 (625)
+.|+|+|+++||||||-..|...- | +.++-.+.|++|
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp 87 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKI 87 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCC
Confidence 369999999999999999998641 0 123445667777
No 446
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.23 E-value=0.44 Score=44.49 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g 57 (625)
-..|+++|..+|||||+.+.|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 447
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=85.07 E-value=0.14 Score=53.86 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=22.4
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 33 EALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 33 ~~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
+.-..++++|+.||||||||++|.+.
T Consensus 58 ~~~G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 58 LGGGFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp CCSSEEEEEESHHHHHHHHTHHHHHH
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34448999999999999999999875
No 448
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=84.89 E-value=0.46 Score=47.87 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
+.|+|+|+++||||||...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4678899999999999999974
No 449
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=84.88 E-value=0.72 Score=49.81 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
-|+++|++|+|||+|+++|.|.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999985
No 450
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=84.79 E-value=0.36 Score=51.30 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.++|||||++.|+|..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68899999999999999999973
No 451
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=84.79 E-value=0.41 Score=50.70 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~~ 59 (625)
...+|+|+.|+|||||+++|.+.-
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 368999999999999999999863
No 452
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=84.31 E-value=0.43 Score=49.53 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVV 56 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~ 56 (625)
+-.-.+++|+.||||||+|+||.
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 44678899999999999999986
No 453
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=84.26 E-value=1.6 Score=49.96 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++++|+.++||||+|+.|.|..
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 58899999999999999999864
No 454
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.12 E-value=0.56 Score=44.31 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|+|||||+|.-..|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 455
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.08 E-value=0.46 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
.+|.+++.|++|+||||++.+|.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999999999986
No 456
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=84.01 E-value=0.88 Score=41.09 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
.+-+++.|++|+|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999754
No 457
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.79 E-value=0.5 Score=45.45 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g 57 (625)
-..|+++|.+||||||+.+.|.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999999985
No 458
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=83.73 E-value=4.5 Score=39.23 Aligned_cols=88 Identities=10% Similarity=0.131 Sum_probs=49.8
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCC--CCceEEEecc
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPT--GERTFGVLTK 212 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~--~~rti~VltK 212 (625)
..+++|||+|+... ..+...+..+|.+|+++.+....+ .....+.+.+... +.+..+|+|+
T Consensus 144 ~yD~viiD~pp~~~---------------~~~~~~l~~aD~vivv~~~~~~s~--~~~~~~~~~l~~~~~~~~~~vv~N~ 206 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD---------------VTLKNALLCSDYVIIPMTAEKWAV--ESLDLFNFFVRKLNLFLPIFLIITR 206 (267)
T ss_dssp TCSEEEEEECSSCS---------------HHHHHHHTTCSEEEEEEESCTTHH--HHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred CCCEEEEECcCCcc---------------HHHHHHHHHCCeEEEEeCCChHHH--HHHHHHHHHHHHHhccCCEEEEEec
Confidence 46899999998442 124455667998777666543222 2222333333322 3467799999
Q ss_pred CcccCccccHHHHHhCcccccCCCeEEEEeCC
Q 006928 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRS 244 (625)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 244 (625)
.+......+..+.+.. +..+.+..+.+
T Consensus 207 ~~~~~~~~~~~~~l~~-----~~~~~~~Ip~~ 233 (267)
T 3k9g_A 207 FKKNRTHKTLFEILKT-----KDRFLGTISER 233 (267)
T ss_dssp ECTTCSCCHHHHHHTT-----STTEEEEEEC-
T ss_pred ccCcchHHHHHHHHhc-----CcccceecCcH
Confidence 9543333345555542 34566666654
No 459
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.69 E-value=0.48 Score=57.64 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.+++||+.|||||||++.|.|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 6899999999999999999996
No 460
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.69 E-value=0.61 Score=44.27 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
-+-+++.|++|+|||+++.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 461
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=83.68 E-value=0.53 Score=46.97 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999985
No 462
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.63 E-value=0.61 Score=43.42 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|.+++.|++|+|||+++.++...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 445999999999999999999753
No 463
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=83.63 E-value=0.46 Score=49.68 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
|.|+|+|+++||||||...|..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 4689999999999999999873
No 464
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=83.58 E-value=0.55 Score=45.65 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
..|+|.|.++|||||+-+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
No 465
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=83.44 E-value=0.53 Score=57.11 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.+++||+.|||||||++.|.|.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 466
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=83.39 E-value=0.53 Score=48.55 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|.++|.|++|+||||+++++.+.
T Consensus 43 ~~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 43 HYPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999875
No 467
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=83.20 E-value=1.2 Score=43.52 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
.+.+.+.|++|+|||++..+|...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999999999764
No 468
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=83.15 E-value=0.46 Score=47.00 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.++|+|++|+|||||+..|++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 469
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.07 E-value=0.66 Score=44.24 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=19.8
Q ss_pred CCCe-EEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPS-VAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~-IvvvG~~saGKSSllnaL~g~ 58 (625)
.-|. |+++|+|||||+|.-..|+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3444 567899999999999998853
No 470
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=83.00 E-value=1.3 Score=44.04 Aligned_cols=94 Identities=11% Similarity=0.146 Sum_probs=55.2
Q ss_pred HHHHHHHhhcCCCEEEEEEecCCCcc-ccHHHH----HHHHHh-CCCCCceEEEecc-CcccCccc--cHHHHHhCcccc
Q 006928 162 IENMVRSYVEKPSCIILAISPANQDI-ATSDAI----KLAREV-DPTGERTFGVLTK-LDLMDKGT--NALEVLEGRSYR 232 (625)
Q Consensus 162 i~~~v~~yi~~~~~iIl~v~~a~~d~-~~~~~l----~l~~~~-d~~~~rti~VltK-~D~~~~~~--~~~~~l~~~~~~ 232 (625)
++.+++.|.++.|+||+||+++..+- ...+.+ .++.+- ...+.+.++..|| -|+...-+ ++.+.+.-..
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~-- 277 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL-- 277 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGG--
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCcc--
Confidence 48899999999999999777665532 222222 122111 1257788888897 47743322 3344443222
Q ss_pred cCCCeE--EEEeCChhhhhccCCHHHH
Q 006928 233 LQHPWV--GIVNRSQADINKNVDMIAA 257 (625)
Q Consensus 233 l~~g~~--~v~~~s~~~~~~~~~~~~~ 257 (625)
+...|+ ++...+++++.++++++..
T Consensus 278 l~r~W~Iq~csA~tGeGL~EGldWL~~ 304 (312)
T 3l2o_B 278 LNHPWLVQDTEAETLTGFLNGIEWILE 304 (312)
T ss_dssp GCSCEEEEEEETTTCTTHHHHHHHHHH
T ss_pred CCCcEEEEecccCCCcCHHHHHHHHHH
Confidence 346776 3455556777777666543
No 471
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=82.94 E-value=0.54 Score=46.71 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 006928 37 SVAVVGGQSSGKSSVLESVV 56 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~ 56 (625)
.|+|+|.+||||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 472
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=82.78 E-value=0.58 Score=44.15 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 006928 37 SVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g 57 (625)
.+++.|++|+||||+..+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999888875
No 473
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=82.75 E-value=7.9 Score=39.07 Aligned_cols=25 Identities=4% Similarity=0.009 Sum_probs=20.7
Q ss_pred CCCe-EEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPS-VAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~-IvvvG~~saGKSSllnaL~g~ 58 (625)
.+|. +.+.|++|+|||++..++...
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHH
Confidence 3554 889999999999999988753
No 474
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=82.50 E-value=0.41 Score=55.79 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.++|+|..|||||||++.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 475
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=82.48 E-value=1.1 Score=47.98 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
-|+++|++|+|||+|+.+|.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999974
No 476
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.42 E-value=0.84 Score=44.96 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
.-+.+.|++|+|||++..+|.+.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999864
No 477
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=82.38 E-value=1.7 Score=38.18 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 006928 38 VAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~ 58 (625)
|.+.|++|+|||++..+|...
T Consensus 27 vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999864
No 478
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=82.22 E-value=0.61 Score=50.43 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g 57 (625)
+-|.++|+|.++||||++|++|+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999985
No 479
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=82.22 E-value=0.77 Score=42.66 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
+-|++.|++|+|||+|+.+|.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999864
No 480
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=82.13 E-value=0.62 Score=45.58 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
....|+|.|..||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999854
No 481
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=81.93 E-value=1.5 Score=42.33 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=20.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
+-|++.|++|+|||++..+|...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999763
No 482
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=81.31 E-value=0.39 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|+++|..|||||||+++|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 5889999999999999999986
No 483
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=81.26 E-value=5.2 Score=41.21 Aligned_cols=91 Identities=14% Similarity=0.044 Sum_probs=47.5
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCc-cccHHHHHHHHHhCCCCCceEEEeccC
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATSDAIKLAREVDPTGERTFGVLTKL 213 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d-~~~~~~l~l~~~~d~~~~rti~VltK~ 213 (625)
..++.|||+|.-.. ..+...+..+|.+|+++.+.... ....++...++.+... .+.-+|.|+.
T Consensus 259 ~yD~VIID~p~~~~---------------~~~~~~l~~aD~vivv~~~~~~s~~~l~~~~~~l~~l~~~-~~~~vv~N~~ 322 (373)
T 3fkq_A 259 NYDEIIVDLPFSLE---------------IEKLKLLSKAWRIIVVNDGSQLSNYKFMRAYESVVLLEQN-DDINIIRNMN 322 (373)
T ss_dssp CCSEEEEECCCCCC---------------HHHHHHHTTCSEEEEEECCCHHHHHHHHHHHHHHHHHTTS-TTCCCGGGEE
T ss_pred CCCEEEEeCCCCCC---------------HHHHHHHHHCCEEEEEecCCchHHHHHHHHHHHHHHhccc-CCcEEEehhH
Confidence 46899999985332 12455678899877765543322 1134555666666653 3333334444
Q ss_pred cccCcccc-HHHHHhCcccccCCCeEEEEeCCh
Q 006928 214 DLMDKGTN-ALEVLEGRSYRLQHPWVGIVNRSQ 245 (625)
Q Consensus 214 D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~ 245 (625)
+....-.. ..+++ ...+..+.+..+.+.
T Consensus 323 ~v~~~~~~~~~~fl----~~~~l~~lG~IP~D~ 351 (373)
T 3fkq_A 323 MIYNKFSNKNSEML----SNISIKTIGGAPRYE 351 (373)
T ss_dssp EEECSCCTTTCCCC----CSCSCEEEEECCCCT
T ss_pred HHHHHHHHHHHHHh----hcCCccceeecCCCC
Confidence 43332221 11111 134566777777654
No 484
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.07 E-value=1.5 Score=38.42 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 006928 38 VAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 38 IvvvG~~saGKSSllnaL~g~ 58 (625)
|.+.|++|+|||++..+|...
T Consensus 30 vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCT
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 889999999999999999865
No 485
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.25 E-value=0.9 Score=42.61 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
..|+++|++++|||+|.-.|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999865
No 486
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=80.22 E-value=0.97 Score=42.55 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.++|.|++|+||||++.++...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999753
No 487
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.99 E-value=0.88 Score=45.40 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=20.4
Q ss_pred CCCCeEE-EECCCCCCHHHHHHHhhCC
Q 006928 33 EALPSVA-VVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 33 ~~lP~Iv-vvG~~saGKSSllnaL~g~ 58 (625)
.+.|..+ +.|++|+|||+|..+|...
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3566544 5599999999999999853
No 488
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=79.97 E-value=0.84 Score=48.10 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g 57 (625)
..|+++|.+||||||+.+.|..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588899999999999999975
No 489
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=79.62 E-value=1.4 Score=44.06 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
-|.+.|++|+|||++..+|.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 4889999999999999999874
No 490
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=79.61 E-value=5.2 Score=38.77 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=37.8
Q ss_pred CCCcEEEeCCCCcccCCCCCCccHHHHHHHHHHHhhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceE-EEeccC
Q 006928 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTF-GVLTKL 213 (625)
Q Consensus 135 ~~~ltlvDlPGi~~~~~~~q~~~~~~~i~~~v~~yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti-~VltK~ 213 (625)
..+++|||+||..... .+....+..+|.+|+++.+.. .+........+.+...+.+.+ +|+|+.
T Consensus 128 ~yD~ViID~pp~~~~~-------------~~~~~~~~~aD~viiv~~~~~--~s~~~~~~~~~~l~~~~~~~~gvV~N~~ 192 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDA-------------PLTVMQDAKPTGVVVVSTPQE--LTAVIVEKAINMAEETNTSVLGLVENMS 192 (262)
T ss_dssp SCSEEEEECCSSSSSH-------------HHHHHHHHCCSEEEEEECSSS--CCHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred CCCEEEEECcCCCchH-------------HHHHHhhccCCeEEEEecCcc--chHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 4789999999854210 011111225787777655443 223344444454545567777 778998
Q ss_pred cc
Q 006928 214 DL 215 (625)
Q Consensus 214 D~ 215 (625)
|.
T Consensus 193 ~~ 194 (262)
T 2ph1_A 193 YF 194 (262)
T ss_dssp CE
T ss_pred cc
Confidence 85
No 491
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.60 E-value=0.91 Score=46.36 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
+.|+|+|.++||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 36899999999999999999854
No 492
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=79.40 E-value=0.8 Score=53.38 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCc
Q 006928 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~~~ 60 (625)
.++++|+.|||||||++.|.|..+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999996443
No 493
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=79.40 E-value=0.63 Score=46.52 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=17.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVG 57 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g 57 (625)
.+.|+|.|..|||||||.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 494
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=79.20 E-value=1.9 Score=43.59 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
..+.|++.|++|+|||++..+|...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3556999999999999999999754
No 495
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=79.04 E-value=0.91 Score=43.68 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 006928 37 SVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~g~ 58 (625)
.|++.|..||||||+.+.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999854
No 496
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=78.76 E-value=0.85 Score=47.51 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=23.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 006928 34 ALPSVAVVGGQSSGKSSVLESVVGRD 59 (625)
Q Consensus 34 ~lP~IvvvG~~saGKSSllnaL~g~~ 59 (625)
.-|.++|+|.+|||||++++.|++.-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999763
No 497
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=78.72 E-value=0.85 Score=51.31 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=18.1
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 006928 37 SVAVVGGQSSGKSSVLESVV 56 (625)
Q Consensus 37 ~IvvvG~~saGKSSllnaL~ 56 (625)
.++|+|+.|||||||++.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 58899999999999999875
No 498
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=78.64 E-value=1.1 Score=45.83 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 006928 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 35 lP~IvvvG~~saGKSSllnaL~g~ 58 (625)
...++|.|++|+|||||++++.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999999999874
No 499
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=78.62 E-value=0.95 Score=46.60 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=31.0
Q ss_pred hhcCCCEEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCcccCcc
Q 006928 169 YVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (625)
Q Consensus 169 yi~~~~~iIl~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (625)
.+.+.|.+++ |++...++.....-+++......+.+.++|+||+|+.+..
T Consensus 127 i~anvD~v~i-v~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~ 176 (358)
T 2rcn_A 127 IAANIDQIVI-VSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDE 176 (358)
T ss_dssp EEECCCEEEE-EEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHH
T ss_pred HHhcCCEEEE-EEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCch
Confidence 3578997665 5555444443332233322233478899999999999764
No 500
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.60 E-value=0.87 Score=45.19 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 006928 36 PSVAVVGGQSSGKSSVLESVVGR 58 (625)
Q Consensus 36 P~IvvvG~~saGKSSllnaL~g~ 58 (625)
.-|++.|++|+|||++..+|.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
Done!