BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006929
(625 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E0W|A Chain A, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
pdb|2E0W|B Chain B, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
Length = 556
Score = 295 bits (756), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 183/522 (35%), Positives = 283/522 (54%), Gaps = 34/522 (6%)
Query: 68 VESEHGVVAADDGHCSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAFMVLRS 127
V ++ G+VA+ D +++G L+ GG+AVDAAVA L V +P A +GGG FM++RS
Sbjct: 20 VRAKQGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRS 79
Query: 128 SATSQTLAFDMRETAPQAASQDMYEND-----TEAKYTGALSIGVPGEIAGLHEAWLKHG 182
T A D RE AP A++DM+ +D ++ T L+ G PG +AG A K+G
Sbjct: 80 K-NGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYG 138
Query: 183 RLAWRALFQPAIKLAKEGFVVAPYLGQHIAN-KAEVILNDRGLRQVFAPNGKLLKSGDKC 241
+ + QPA KLA++GF+V L + +EV+ N + +F G+ LK GD
Sbjct: 139 TMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTL 198
Query: 242 YNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANA 301
LA+SLE +AE GP+ Y GT+ E++ +++++ GG++T EDL +YK +S +
Sbjct: 199 VQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDY 258
Query: 302 MGYTISGMPPPSSGTVGMSMILNIFDS-------YGSSDSAKGNLGLHRLIEALKHMFAV 354
GY + MPPPSSG + + ILNI ++ +GS+D+ + + EA K+ +A
Sbjct: 259 RGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADA------MQIMAEAEKYAYAD 312
Query: 355 RMT-LGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFP-PDYYMYRWSQLRDHGTSHF 412
R LGDP FV + + +YA+ I +I N P + + + + +H+
Sbjct: 313 RSEYLGDPDFVK--VPWQALTNKAYAKSIADQIDINKAKPSSEIRPGKLAPYESNQATHY 370
Query: 413 CIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSI-PTEISPDKLPPAPANFI 471
+VD + NAV++T T+N FG GI++ +GI+LNN+MDDFS P + L AN +
Sbjct: 371 SVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDANAV 430
Query: 472 EPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQNPRV 531
PNKRPLSSM+P I+ KD + V G GG II V Q+ +N G+ A PR
Sbjct: 431 GPNKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGLNVAEATNAPRF 490
Query: 532 YHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAK 573
+H+ +P+ + E S ++ LE +G ++ K
Sbjct: 491 HHQWLPDELRVEKG---------FSPDTLKLLEAKGQKVALK 523
>pdb|2Z8I|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8I|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8J|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8J|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8K|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
pdb|2Z8K|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
Length = 366
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 188/340 (55%), Gaps = 23/340 (6%)
Query: 68 VESEHGVVAADDGHCSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAFMVLRS 127
V ++ G+VA+ D +++G L+ GG+AVDAAVA L V +P A +GGG FM++RS
Sbjct: 20 VRAKQGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRS 79
Query: 128 SATSQTLAFDMRETAPQAASQDMYEND-----TEAKYTGALSIGVPGEIAGLHEAWLKHG 182
T A D RE AP A++DM+ +D ++ T L+ G PG +AG A K+G
Sbjct: 80 K-NGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYG 138
Query: 183 RLAWRALFQPAIKLAKEGFVVAPYLGQHIAN-KAEVILNDRGLRQVFAPNGKLLKSGDKC 241
+ + QPA KLA++GF+V L + +EV+ N + +F G+ LK GD
Sbjct: 139 TMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTL 198
Query: 242 YNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANA 301
LA+SLE +AE GP+ Y GT+ E++ +++++ GG++T EDL +YK +S +
Sbjct: 199 VQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDY 258
Query: 302 MGYTISGMPPPSSGTVGMSMILNIFDS-------YGSSDSAKGNLGLHRLIEALKHMFAV 354
GY + MPPPSSG + + ILNI ++ +GS+D+ + + EA K+ +A
Sbjct: 259 RGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADA------MQIMAEAEKYAYAD 312
Query: 355 RMT-LGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFP 393
R LGDP FV + + +YA+ I +I N P
Sbjct: 313 RSEYLGDPDFVK--VPWQALTNKAYAKSIADQIDINKAKP 350
>pdb|3A75|A Chain A, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
pdb|3A75|C Chain C, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
Length = 384
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 193/373 (51%), Gaps = 21/373 (5%)
Query: 63 NYGDVVESEHGVVAADDGHCSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAF 122
Y V + G+VA SEIGA L+ GG+A+DAAVA L V PM SGIGGG F
Sbjct: 19 EYKQVDVGKDGMVATAHPLASEIGADVLKKGGNAIDAAVAIQFALNVTEPMMSGIGGGGF 78
Query: 123 MVLRSSATSQTLAFDMRETAPQAASQDMYENDT------EAKYTGALSIGVPGEIAGLHE 176
M++ T T D RE AP A+ DM+ ++ + T ++GVPG + GL E
Sbjct: 79 MMVYDGKTKDTTIIDSRERAPAGATPDMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEE 138
Query: 177 AWLKHGRLAWRALFQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQVFAPNGKLLK 236
A K G + + L P+IKLA++GF + L + I++ E L+ + VF PNG+ LK
Sbjct: 139 ALDKWGTRSMKQLITPSIKLAEKGFPIDSVLAEAISDYQEK-LSRTAAKDVFLPNGEPLK 197
Query: 237 SGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDA 296
GD +LA++ + + +G +A Y G + L V++ GG +T +DL +Y + + +
Sbjct: 198 EGDTLIQKDLAKTFKLIRSKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDLENYDITIDEP 257
Query: 297 MSANAMGYTISGMPPPSSGTVGMSMILNIFDSYGSSDSAKGNLGLHRLIEALKHM-FAVR 355
+ + GY I+ PPPSSG + + +L I D + S + ++L+ H+ +A R
Sbjct: 258 IWGDYQGYQIATTPPPSSGGIFLLQMLKILDHFNLSQYDVRSWEKYQLLAETMHLSYADR 317
Query: 356 MTL-GDPKFVNNTNTLSEMLSPSY-AEQIQLKIFDNTTFPP---DYYMYRWSQLRDHGTS 410
+ GDP+FVN L +L P Y E+ QL D P D + Y+ G++
Sbjct: 318 ASYAGDPEFVN--VPLKGLLHPDYIKERQQLINLDQVNKKPKAGDPWKYQ------EGSA 369
Query: 411 HFCIVDAERNAVS 423
++ V+ ++ V
Sbjct: 370 NYKQVEQPKDKVE 382
>pdb|2V36|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
pdb|2V36|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
Length = 376
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 192/373 (51%), Gaps = 21/373 (5%)
Query: 63 NYGDVVESEHGVVAADDGHCSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAF 122
Y V + G+VA SEIGA L+ GG+A+DAAVA L V PM SGIGGG F
Sbjct: 11 EYKQVDVGKDGMVATAHPLASEIGADVLKKGGNAIDAAVAIQFALNVTEPMMSGIGGGGF 70
Query: 123 MVLRSSATSQTLAFDMRETAPQAASQDMYENDT------EAKYTGALSIGVPGEIAGLHE 176
M++ T T D RE AP A+ DM+ ++ + T ++GVPG + GL E
Sbjct: 71 MMVYDGKTKDTTIIDSRERAPAGATPDMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEE 130
Query: 177 AWLKHGRLAWRALFQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQVFAPNGKLLK 236
A K G + + L P+IKLA++GF + L + I++ E L+ + VF PNG+ LK
Sbjct: 131 ALDKWGTRSMKQLITPSIKLAEKGFPIDSVLAEAISDYQEK-LSRTAAKDVFLPNGEPLK 189
Query: 237 SGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDA 296
GD +LA++ + + +G +A Y G + L V++ GG +T +DL +Y + + +
Sbjct: 190 EGDTLIQKDLAKTFKLIRSKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDLENYDITIDEP 249
Query: 297 MSANAMGYTISGMPPPSSGTVGMSMILNIFDSYGSSDSAKGNLGLHRLIEALKHM-FAVR 355
+ + GY I+ PPPSSG + + + I D + S + ++L+ H+ +A R
Sbjct: 250 IWGDYQGYQIATTPPPSSGGIFLLQMPKILDHFNLSQYDVRSWEKYQLLAETMHLSYADR 309
Query: 356 MTL-GDPKFVNNTNTLSEMLSPSY-AEQIQLKIFDNTTFPP---DYYMYRWSQLRDHGTS 410
+ GDP+FVN L +L P Y E+ QL D P D + Y+ G++
Sbjct: 310 ASYAGDPEFVN--VPLKGLLHPDYIKERQQLINLDQVNKKPKAGDPWKYQ------EGSA 361
Query: 411 HFCIVDAERNAVS 423
++ V+ ++ V
Sbjct: 362 NYKQVEQPKDKVE 374
>pdb|2DBU|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBU|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBW|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBW|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBX|A Chain A, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DBX|C Chain C, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DG5|A Chain A, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2DG5|C Chain C, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2E0X|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0X|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0Y|A Chain A, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2E0Y|C Chain C, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
Length = 366
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 117/334 (35%), Positives = 179/334 (53%), Gaps = 11/334 (3%)
Query: 68 VESEHGVVAADDGHCSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAFMVLRS 127
V ++ G VA+ D +++G L+ GG+AVDAAVA L V +P A +GGG F ++RS
Sbjct: 20 VRAKQGXVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFXLIRS 79
Query: 128 SATSQTLAFDMRETAPQAASQDMYEND-----TEAKYTGALSIGVPGEIAGLHEAWLKHG 182
T A D RE AP A++D + +D ++ T L+ G PG +AG A K+G
Sbjct: 80 K-NGNTTAIDFREXAPAKATRDXFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYG 138
Query: 183 RLAWRALFQPAIKLAKEGFVVAPYLGQHIANK-AEVILNDRGLRQVFAPNGKLLKSGDKC 241
+ QPA KLA++GF+V L + +EV+ N + +F G+ LK GD
Sbjct: 139 TXPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTL 198
Query: 242 YNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANA 301
LA+SLE +AE GP+ Y GT+ E++ ++ ++ GG++T EDL +YK +S +
Sbjct: 199 VQANLAKSLEXIAENGPDEFYKGTIAEQIAQEXQKNGGLITKEDLAAYKAVERTPISGDY 258
Query: 302 MGYTISGMPPPSSGTVGMSMILNIFDSYGSSDSAKGNLGLHRLI-EALKHMFAVRMT-LG 359
GY + PPPSSG + + ILNI +++ G+ ++ EA K+ +A R LG
Sbjct: 259 RGYQVYSXPPPSSGGIHIVQILNILENFDXKKYGFGSADAXQIXAEAEKYAYADRSEYLG 318
Query: 360 DPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFP 393
DP FV + + +YA+ I +I N P
Sbjct: 319 DPDFVK--VPWQALTNKAYAKSIADQIDINKAKP 350
>pdb|2QM6|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QM6|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QMC|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|2QMC|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|3FNM|A Chain A, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
pdb|3FNM|C Chain C, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
Length = 377
Score = 161 bits (408), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 111/328 (33%), Positives = 168/328 (51%), Gaps = 29/328 (8%)
Query: 82 CSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAFMVLRSSATSQTLAFDMRET 141
SEIG L GG+A+DAAVA L VV+P A IGGG F V+ A + +A D RE
Sbjct: 45 ASEIGQKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIHL-ANGENVALDFREK 103
Query: 142 APQAASQDMYENDT-----EAKYTGALSIGVPGEIAGLHEAWLKHGRLAWRALFQPAIKL 196
AP A+++M+ + + G L+ GVPG +AG+ K+G L PAIKL
Sbjct: 104 APLKATKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTKKLSQLIDPAIKL 163
Query: 197 AKEGFVVAPYLGQHIANKAEVILNDRGLRQVFAPNGKL-LKSGDKCYNVELAQSLEALAE 255
A+ G+ ++ + + E L ++ F G L + GD +LA++L +
Sbjct: 164 AENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIKT 223
Query: 256 QGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANAMGYTISGMPPPSSG 315
G + Y G V E + KD+++ GGI+T EDL SY V + + GY I M PPSSG
Sbjct: 224 LGAKGFYQGQVAELIEKDMKKNGGIITKEDLASYNVKWRKPVVGSYRGYKIISMSPPSSG 283
Query: 316 TVGMSMILNIFDS-------YGSSDSAKGNLGLHRLIEALKHMFAVR-MTLGDPKFVNNT 367
+ ILN+ ++ YG+S + +H EA++ +A R + +GD FV +
Sbjct: 284 GTHLIQILNVMENADLSALGYGASKN------IHIAAEAMRQAYADRSVYMGDADFV--S 335
Query: 368 NTLSEMLSPSYAEQIQLKIFDNTTFPPD 395
+ ++++ +YA+ KIFD T PD
Sbjct: 336 VPVDKLINKAYAK----KIFD--TIQPD 357
>pdb|2NQO|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2NQO|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
Length = 376
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/328 (33%), Positives = 168/328 (51%), Gaps = 29/328 (8%)
Query: 82 CSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAFMVLRSSATSQTLAFDMRET 141
SEIG L GG+A+DAAVA L VV+P A IGGG F V+ A + +A D RE
Sbjct: 44 ASEIGQKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIHL-ANGENVALDFREK 102
Query: 142 APQAASQDMYENDT-----EAKYTGALSIGVPGEIAGLHEAWLKHGRLAWRALFQPAIKL 196
AP A+++M+ + + G L+ GVPG +AG+ K+G L PAIKL
Sbjct: 103 APLKATKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTKKLSQLIDPAIKL 162
Query: 197 AKEGFVVAPYLGQHIANKAEVILNDRGLRQVFAPNGKL-LKSGDKCYNVELAQSLEALAE 255
A+ G+ ++ + + E L ++ F G L + GD +LA++L +
Sbjct: 163 AENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIKT 222
Query: 256 QGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANAMGYTISGMPPPSSG 315
G + Y G V E + KD+++ GGI+T EDL SY V + + GY I M PPSSG
Sbjct: 223 LGAKGFYQGQVAELIEKDMKKNGGIITKEDLASYNVKWRKPVVGSYRGYKIISMSPPSSG 282
Query: 316 TVGMSMILNIFDS-------YGSSDSAKGNLGLHRLIEALKHMFAVR-MTLGDPKFVNNT 367
+ ILN+ ++ YG+S + +H EA++ +A R + +GD FV +
Sbjct: 283 GTHLIQILNVMENADLSALGYGASKN------IHIAAEAMRQAYADRSVYMGDADFV--S 334
Query: 368 NTLSEMLSPSYAEQIQLKIFDNTTFPPD 395
+ ++++ +YA+ KIFD T PD
Sbjct: 335 VPVDKLINKAYAK----KIFD--TIQPD 356
>pdb|2NLZ|A Chain A, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|B Chain B, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|C Chain C, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|D Chain D, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
Length = 547
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 154/580 (26%), Positives = 254/580 (43%), Gaps = 79/580 (13%)
Query: 66 DVVESEHGVVAADDGHCSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAFMVL 125
+VV +++G+VA ++ G L+ GG+A+DAA+ATA L V+ P ++GIG AF ++
Sbjct: 17 NVVYAKNGMVATSQPLAAQAGLDILKAGGNAIDAAIATATALTVLEPTSNGIGSDAFALV 76
Query: 126 RSSATSQTLAFDMRETAP-----QAASQDMYENDTEAKYTGALSIGVPGEIAGLHEAWLK 180
+ L R AP +A YE E G + + VPG E
Sbjct: 77 WTKGKLHGLNGSGR--APMSLTMEAVKAKGYEQ--ELPPYGVIPVTVPGAPGAWAELAKM 132
Query: 181 HGRLAWRALFQPAIKLAKEGFVVAPYLGQHIANKAEVILND------RGLRQVFAPNGKL 234
+G L A PAI+ A+EG+ V P L ++ + + + + FAP G+
Sbjct: 133 YGNLPLAASLAPAIRYAEEGYPVTPTLAKYWKAAYDRVKTEWTDDVYQPWFDTFAPKGRA 192
Query: 235 LKSGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVM 294
+ G+ + A +L ++AE E+ Y G + +++ + GG LT EDL Y+ + +
Sbjct: 193 PRVGEVWRSQGHADTLRSIAESNGESFYRGELADQIHAFFDKHGGYLTKEDLACYRPEWV 252
Query: 295 DAMSANAMGYTISGMPPPSSGTVGMSM--ILNIFDSYGSSDSAKGNLGLHRLIEALKHMF 352
+ +S + GY + +PP G V + I+ F+ Y D+ H+ IEA+K F
Sbjct: 253 EPISIDYRGYRVWEIPPNGQGLVALEALNIVKGFEFY-HKDTVD---TYHKQIEAMKLAF 308
Query: 353 AVRMTLGDPKFVNNTNTLS----EMLSPSYAEQIQLKIFDNTTFPPDYYMYRWSQLRDHG 408
M K+V + +S ++LS YA + + +I + P R G
Sbjct: 309 VDGM-----KYVTEPSDMSVSVEQLLSDEYATERRKEIGEQALTPEPGTPPR------GG 357
Query: 409 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSIPTEISPDKLPPAPA 468
T + D + N VS + FG+G++ P TGI + N +FS L P
Sbjct: 358 TVYLATADGDGNMVSFIQSNYMGFGSGVVVPGTGIAMQNRGHNFS---------LDPNHD 408
Query: 469 NFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQN 528
N ++P KR ++ P +TK++Q G G GG QV +N G+ P AA+
Sbjct: 409 NALKPGKRTYHTIIPGFLTKNDQPIGPFGVMGGFMQPQGHMQVMMNTIDFGLNPQAALDA 468
Query: 529 PRVYHKLIPNVVSYENWTVIDGDHIEISEESKL----FLEKRGHQLKAKAGGAIVQFVVQ 584
PR W +G +++ + L +RGH+ +Q V+
Sbjct: 469 PR--------------WQWTNGKQVQVEPTFPVDIAQALVRRGHK---------IQVVLD 505
Query: 585 TLQNPINRIRKIGKGIDNAQALHGILTAVSDPRKDGRPAA 624
+ R + I + G+L ++PR DG+ AA
Sbjct: 506 --EGAFGRGQIIWR-----DPTTGVLAGGTEPRTDGQVAA 538
>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
Length = 516
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 116/469 (24%), Positives = 194/469 (41%), Gaps = 43/469 (9%)
Query: 70 SEHGVVAADDGHCSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAFMVLRSSA 129
S+ V+A+ S G L+ GG+ DAA+A + L V G+GG F ++R
Sbjct: 10 SQRSVIASSSELASLAGRDILKRGGNIFDAALAVSAXLCVTQNNLCGLGGDLFALIRDE- 68
Query: 130 TSQTLAFDMRETAPQAASQDMYEND--TEAKYTGALS-IGVPGEIAGLHEAWLKHGRLAW 186
Q + A +A S D YE+ T+ G + I VPG E + K
Sbjct: 69 NGQIXDLNGSGQASRAVSIDYYESXGLTKIPERGPYAAITVPGIAGSWDEIFRKFATXDI 128
Query: 187 RALFQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQVFAPNGKLLKSGDKCYNVEL 246
+ +PAI+ A GF + IA A VI RG +F PNG + +G+ +L
Sbjct: 129 ADILEPAIRTASAGFPITQNYSDSIARSAPVIGQYRGWSSIFXPNGSVPVAGEILKQPDL 188
Query: 247 AQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANAMGYTI 306
A+S +E+G + Y+G++ + ++ + G L+ DLR Y+ + + + + I
Sbjct: 189 AESFRLXSEEGFRSFYDGSLADIIIAGLEGTGSPLSDRDLRVYRPLIGKPVFTDLDEFRI 248
Query: 307 SGMPPPSSGTVGMSMILNIFDSYGSSDSAKGNLGLHRLIEALKHMFAVRMTLGDPKFVNN 366
P S G + I +S+G + + E + + R + DP + N
Sbjct: 249 YETSPNSQGITVIEWIRGX-ESHGYDSRTXWEAKIEDIFETXEEAYDKRRKITDPSYXN- 306
Query: 367 TNTLSEMLSPSYAEQIQLKIFDNTTFPPDYYMYRWSQLRDHG----TSHFCIVDAERNAV 422
+++ S + + K RDH T++F I D+E +V
Sbjct: 307 ---IAQHDSANGKKDGLPK-------------------RDHNDIGDTTYFSISDSEGRSV 344
Query: 423 SMTTTVNYAFGAGILSPSTGIVLNNEMDDFSIPTEISPDKLPPAPANFIEPNKRPLSSMT 482
S+ + FG+GI+ TG VL N F++ + N + P KR ++
Sbjct: 345 SIIQSNYXGFGSGIVPKGTGFVLQNRGSYFTLQRD---------HPNALXPGKRTFHTLA 395
Query: 483 PLIITKDNQLAGVIGGSGGMNIIPAV-TQVFINHFILGMEPLAAVQNPR 530
+ K++ L +G GG +I P V Q+ +P A + PR
Sbjct: 396 ACXVEKEHDLYASLGSXGG-DIQPQVQXQILXEILKDNTDPQAILDKPR 443
>pdb|2V36|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
pdb|2V36|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
Length = 193
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 409 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSIPTEISPDKLPPAPA 468
T+HF + D N VS TTT+ FG GI+ P G++LNNE+ DF D +P A
Sbjct: 1 TTHFTVADRWGNVVSYTTTIEQLFGTGIMVPDYGVILNNELTDF--------DAIPGG-A 51
Query: 469 NFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQN 528
N ++PNKRPLSSMTP I+ KD++ +G GG II +V Q + H GME AAV+
Sbjct: 52 NEVQPNKRPLSSMTPTILFKDDKPVLTVGSPGGATIISSVLQTILYHIEYGMELKAAVEE 111
Query: 529 PRVY 532
PR+Y
Sbjct: 112 PRIY 115
>pdb|3A75|B Chain B, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
pdb|3A75|D Chain D, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
Length = 185
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 409 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSIPTEISPDKLPPAPA 468
T+HF + D N VS TTT+ FG GI+ P G++LNNE+ DF D +P A
Sbjct: 1 TTHFTVADRWGNVVSYTTTIEQLFGTGIMVPDYGVILNNELTDF--------DAIPGG-A 51
Query: 469 NFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQN 528
N ++PNKRPLSSMTP I+ KD++ +G GG II +V Q + H GME AAV+
Sbjct: 52 NEVQPNKRPLSSMTPTILFKDDKPVLTVGSPGGATIISSVLQTILYHIEYGMELKAAVEE 111
Query: 529 PRVY 532
PR+Y
Sbjct: 112 PRIY 115
>pdb|2Z8I|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8I|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8J|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8K|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
pdb|2Z8K|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
Length = 190
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 92/166 (55%), Gaps = 10/166 (6%)
Query: 409 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSI-PTEISPDKLPPAP 467
T+H+ +VD + NAV++T T+N FG GI++ +GI+LNN+MDDFS P + L
Sbjct: 1 TTHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGD 60
Query: 468 ANFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQ 527
AN + PNKRPLSSM+P I+ KD + V G GG II V Q+ +N G+ A
Sbjct: 61 ANAVGPNKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGLNVAEATN 120
Query: 528 NPRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAK 573
PR +H+ +P+ + E S ++ LE +G ++ K
Sbjct: 121 APRFHHQWLPDELRVEK---------GFSPDTLKLLEAKGQKVALK 157
>pdb|2Z8J|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
Length = 190
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 91/165 (55%), Gaps = 10/165 (6%)
Query: 410 SHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSI-PTEISPDKLPPAPA 468
+H+ +VD + NAV++T T+N FG GI++ +GI+LNN+MDDFS P + L A
Sbjct: 2 THYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDA 61
Query: 469 NFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQN 528
N + PNKRPLSSM+P I+ KD + V G GG II V Q+ +N G+ A
Sbjct: 62 NAVGPNKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGLNVAEATNA 121
Query: 529 PRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAK 573
PR +H+ +P+ + E S ++ LE +G ++ K
Sbjct: 122 PRFHHQWLPDELRVEK---------GFSPDTLKLLEAKGQKVALK 157
>pdb|2DBU|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBU|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBX|B Chain B, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DBX|D Chain D, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DG5|B Chain B, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2DG5|D Chain D, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2E0X|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0X|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0Y|B Chain B, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2E0Y|D Chain D, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2DBW|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBW|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
Length = 190
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 409 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSI-PTEISPDKLPPAP 467
T+H+ +VD + NAV++T T+N FG GI++ +GI+LNN+ DDFS P + L
Sbjct: 1 TTHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQXDDFSAKPGVPNVYGLVGGD 60
Query: 468 ANFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQ 527
AN + PNKRPLSS +P I+ KD + V G GG II V Q +N G+ A
Sbjct: 61 ANAVGPNKRPLSSXSPTIVVKDGKTWLVTGSPGGSRIITTVLQXVVNSIDYGLNVAEATN 120
Query: 528 NPRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAKAGGAIVQFV 582
PR +H+ +P+ + E S ++ LE +G ++ K Q +
Sbjct: 121 APRFHHQWLPDELRVEK---------GFSPDTLKLLEAKGQKVALKEAXGSTQSI 166
>pdb|3G9K|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3G9K|D Chain D, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3GA9|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd, Crystal Form Ii
Length = 323
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 133/287 (46%), Gaps = 30/287 (10%)
Query: 84 EIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAFMVLRSSATSQTLAFDMRETAP 143
E G L+ GG AVDAA+ + LGVV ASGIGGG ++ S + D RET P
Sbjct: 32 EEGXKVLKNGGSAVDAAIVVSYVLGVVELHASGIGGGGGXLIISK--DKETFIDYRETTP 89
Query: 144 QAASQDMYENDTEAKYTGALS--IGVPGEIAGLHEAWLKHGRLAWRALFQPAIKLAKEGF 201
+TG IGVPG +AG +G L L QPAI A++GF
Sbjct: 90 Y--------------FTGNQKPHIGVPGFVAGXEYIHDNYGSLPXGELLQPAINYAEKGF 135
Query: 202 VVAPYLGQHIANKAEVILNDRGLRQVFAPNGKLLKSGDKCYNVELAQSLEALAEQGPEAL 261
V L + I +D+ +F PNG+ +++G+ +LA++L+ + ++G +
Sbjct: 136 KVDDSLTXRLDLAKPRIYSDK--LSIFYPNGEPIETGETLIQTDLARTLKKIQKEGAKGF 193
Query: 262 YNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSM 321
Y G V + K + +++ED++ YKV+V + N GY + PPP SG V +
Sbjct: 194 YEGGVARAISKTAK-----ISLEDIKGYKVEVRKPVKGNYXGYDVYTAPPPFSG-VTLLQ 247
Query: 322 ILNIFDS---YGSSDSAKGNLGLHRLIEALKHMFAVRMTLGDPKFVN 365
L + + Y D I + + + LGDP +VN
Sbjct: 248 XLKLAEKKEVYKDVDHTATYXSKXEEISRIAYQ-DRKKNLGDPNYVN 293
>pdb|2NQO|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2NQO|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2QM6|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QM6|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|3FNM|B Chain B, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
pdb|3FNM|D Chain D, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
Length = 188
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 89/166 (53%), Gaps = 9/166 (5%)
Query: 409 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSI-PTEISPDKLPPAP 467
T+H+ + D NAVS+T T+N ++G+ G +LNNEMDDFSI P + L
Sbjct: 1 TTHYSVADRWGNAVSVTYTINASYGSAASIDGAGFLLNNEMDDFSIKPGNPNLYGLVGGD 60
Query: 468 ANFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQ 527
AN IE NKRPLSSM+P I+ K+N++ V+G GG II V QV N M AV
Sbjct: 61 ANAIEANKRPLSSMSPTIVLKNNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVS 120
Query: 528 NPRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAK 573
PR + + +P+ + E + + + K L K G+Q+ K
Sbjct: 121 APRFHMQWLPDELRIEKFG--------MPADVKDNLTKMGYQIVTK 158
>pdb|2QMC|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|2QMC|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
Length = 188
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 88/165 (53%), Gaps = 9/165 (5%)
Query: 410 SHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSI-PTEISPDKLPPAPA 468
+H+ + D NAVS+T T+N ++G+ G +LNNEMDDFSI P + L A
Sbjct: 2 THYSVADRWGNAVSVTYTINASYGSAASIDGAGFLLNNEMDDFSIKPGNPNLYGLVGGDA 61
Query: 469 NFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQN 528
N IE NKRPLSSM+P I+ K+N++ V+G GG II V QV N M AV
Sbjct: 62 NAIEANKRPLSSMSPTIVLKNNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVSA 121
Query: 529 PRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAK 573
PR + + +P+ + E + + + K L K G+Q+ K
Sbjct: 122 PRFHMQWLPDELRIEKFG--------MPADVKDNLTKMGYQIVTK 158
>pdb|3G9K|S Chain S, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3G9K|F Chain F, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3GA9|S Chain S, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd, Crystal Form Ii
Length = 177
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 25/169 (14%)
Query: 409 TSHFCIVDAERNAVSMTTTVNYAFGAGILSPSTGIVLNNEMDDFSIPTEISPDKLPPAPA 468
T+HF I+D + VS T T++ FG G + G LNN++ +F
Sbjct: 1 TTHFVIIDRDGTVVSSTNTLSNFFGTG--KYTAGFFLNNQLQNFG-----------SEGF 47
Query: 469 NFIEPNKRPLSSMTPLIITKDNQLAGVIGGSGGMNIIPAVTQVFINHFILGMEPLAAVQN 528
N EP KR + P ++ KD + G+ GS G N IP + ++ + G L + N
Sbjct: 48 NSYEPGKRSRTFXAPTVLKKDGETIGI--GSPGGNRIPQILTPILDKYTHGKGSLQDIIN 105
Query: 529 PRVYHKLIPNVVSYENWTVIDGDHIEISEESKLFLEKRGHQLKAKAGGA 577
+ ++E T I++S E K L ++G +K K A
Sbjct: 106 EYRF--------TFEKNTAY--TEIQLSSEVKNELSRKGLNVKKKVSPA 144
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
pdb|3ZEF|E Chain E, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
Length = 1531
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 262 YNGTVGEKLVKDVREAGGILTIEDLRSY-KVDVMDAMSANAMGYTISGMPPPSSGTVGMS 320
+ G + K+ DV+ G D+ Y + +D + N +S P P+ +G+
Sbjct: 842 FKGLITNKMWFDVQLRYGDYDSHDISRYVRAKFLDYTTDN-----VSMYPSPTGVMIGID 896
Query: 321 MILNIFDSYGSSDSA-------------KGNLGLHRLIEALKHMFAVRMTLGDPKFVNNT 367
+ N++D+YG+ + K N L+ L E ++ + + F+N++
Sbjct: 897 LAYNMYDAYGNWFNGLKPLIQNSMRTIMKANPALYVLRERIRKGLQIYQSSVQEPFLNSS 956
Query: 368 N 368
N
Sbjct: 957 N 957
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex
Length = 1564
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 262 YNGTVGEKLVKDVREAGGILTIEDLRSY-KVDVMDAMSANAMGYTISGMPPPSSGTVGMS 320
+ G + K+ DV+ G D+ Y + +D + N +S P P+ +G+
Sbjct: 875 FKGLITNKMWFDVQLRYGDYDSHDISRYVRAKFLDYTTDN-----VSMYPSPTGVMIGID 929
Query: 321 MILNIFDSYGSSDSA-------------KGNLGLHRLIEALKHMFAVRMTLGDPKFVNNT 367
+ N++D+YG+ + K N L+ L E ++ + + F+N++
Sbjct: 930 LAYNMYDAYGNWFNGLKPLIQNSMRTIMKANPALYVLRERIRKGLQIYQSSVQEPFLNSS 989
Query: 368 N 368
N
Sbjct: 990 N 990
>pdb|2CRY|A Chain A, Solution Structure Of The Fifth Ig-Like Domain Of Human
Kin Of Irre Like 3
Length = 122
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 356 MTLGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFPPDYYMYRWSQ-LRDHGTSHFCI 414
+T+ P +++T T + + E+ Q+K F +T PPD + W + + + GTS
Sbjct: 9 LTVNGPPIISSTQTQHAL----HGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYT 64
Query: 415 VD---AERNAVSMTTTVN 429
V+ E +S T N
Sbjct: 65 VETISTEEGVISTLTISN 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,834,798
Number of Sequences: 62578
Number of extensions: 795533
Number of successful extensions: 2099
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2038
Number of HSP's gapped (non-prelim): 27
length of query: 625
length of database: 14,973,337
effective HSP length: 105
effective length of query: 520
effective length of database: 8,402,647
effective search space: 4369376440
effective search space used: 4369376440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)