BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006930
(625 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 327 bits (838), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 210/518 (40%), Positives = 274/518 (52%), Gaps = 23/518 (4%)
Query: 110 TTRSPQFLGLRNQQGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQV 169
TT + FL L GLW S G DVI+ V D+GIWPE SF D + IP +WKG+C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 170 GVKFTAKNCNKKIIGARFFSKGHEXXXXXXXXXXXXXNETVEFMSPRDADGHGTHTASTA 229
G +F A CN+K+IGA +F+KG + S RD DGHGTH AS
Sbjct: 61 GTQFNASMCNRKLIGANYFNKG---------ILANDPTVNITMNSARDTDGHGTHCASIT 111
Query: 230 AGRHAFRASMEGYXXXXXXXXXXXXRLAVYKVCWKNAGCFDSDILAAFDAAVNXXXXXXX 289
AG A S GY RLAVYK + N G F SD++AA D AV
Sbjct: 112 AGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSF-NEGTFTSDLIAAMDQAV---ADGVD 167
Query: 290 XXXXXXXXXXXPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGT 349
P Y D I+I S+GA +GV VS+SAGN GP S+ N +PWI+ V +G
Sbjct: 168 MISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGH 227
Query: 350 IDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVR 409
DR F + LG+G ++ G SL+ P+IY S+ + +P
Sbjct: 228 TDRTFAGTLTLGNGLKIRGWSLFPARAFVRDS-PVIYNKTLSDCSSEELLSQVENP---E 283
Query: 410 GKIVICDRGSSPRXXXXXXXXXXXXXXMILANGISNGEGLVGDAHLL-PACALGSDEGDA 468
IVICD + IS G+ A P + EG
Sbjct: 284 NTIVICDDNGDFSDQMRIITRARLKAAIF----ISEDPGVFRSATFPNPGVVVNKKEGKQ 339
Query: 469 VKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAA 528
V Y+ ++ PTATI F+ T L KPAPVVA+ SARGP+ I KPD++APGV ILAA
Sbjct: 340 VINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAA 399
Query: 529 WTEAVGPTGLDSD-LRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTA 587
+ V T + ++ L T++ + SGTSMA PH +G AA+LK+AHP+WSP+AIRSAMMTTA
Sbjct: 400 YPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTA 459
Query: 588 SIVDNSNQPMTDEATGNASTPYDFGAGHVNLDRAMDPG 625
+DN+ +P+ D A+TP D GAGHV+ +RA+DPG
Sbjct: 460 DPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPG 497
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 320 bits (821), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 204/521 (39%), Positives = 278/521 (53%), Gaps = 49/521 (9%)
Query: 110 TTRSPQFLGLRNQQGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQV 169
TTRS FLG + S S++++GV DTGIWPE SF D P KWKG C+
Sbjct: 1 TTRSWDFLGF--PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 170 GVKFTAKNCNKKIIGARFFSKGHEXXXXXXXXXXXXXNETVEFMSPRDADGHGTHTASTA 229
F CN+KIIGAR + G + PRD +GHGTHTASTA
Sbjct: 59 SNNF---RCNRKIIGARSYHIGRPISPG-------------DVNGPRDTNGHGTHTASTA 102
Query: 230 AGRHAFRASMEGYXXXXXXXXXXXXRLAVYKVCWKNAGCFDSDILAAFDAAVNXXXXXXX 289
AG +A++ G R+A YKVCW N GC D+DILAA+D A+
Sbjct: 103 AGGLVSQANLYGLGLGTARGGVPLARIAAYKVCW-NDGCSDTDILAAYDDAI--ADGVDI 159
Query: 290 XXXXXXXXXXXPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGT 349
Y++D IAIGS+ A RG+ S+SAGN GPN + +L+PW+++V A T
Sbjct: 160 ISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAAST 219
Query: 350 IDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLI----YPGKSGVLSAS-LCMENSLD 404
+DR F +V++G+G+ GVS+ + YPL+ P S S C + S++
Sbjct: 220 MDRKFVTQVQIGNGQSFQGVSINT---FDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVN 276
Query: 405 PNLVRGKIVICDRGSSPRXXXXXXXXXXXXXXMILANGISNGEGLVGDAHLLPACALGSD 464
PNL++GKIV+C+ P +++ D++ LP+ L +
Sbjct: 277 PNLLKGKIVVCEASFGPHEFFKSLDGAAGVL-------MTSNTRDYADSYPLPSSVLDPN 329
Query: 465 EGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVN 524
+ A YI S +P ATI FK T + APVV SFS+RGPN +++KPD+ PGV
Sbjct: 330 DLLATLRYIYSIRSPGATI-FKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVE 388
Query: 525 ILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMM 584
ILAAW +V P G R T FNI+SGTSM+CPH++G A +K+ +P WSPAAI+SA+M
Sbjct: 389 ILAAW-PSVAPVG--GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALM 445
Query: 585 TTASIVDNSNQPMTDEATGNASTPYDFGAGHVNLDRAMDPG 625
TTAS PM A N + +G+GHVN +A+ PG
Sbjct: 446 TTAS-------PM--NARFNPQAEFAYGSGHVNPLKAVRPG 477
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 17/134 (12%)
Query: 488 TILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEF 547
T+ + V+ FS+RGP N LKP+++APG I+AA A G T + + +
Sbjct: 299 TVGAVDKYDVITDFSSRGPTADNR--LKPEVVAPGNWIIAA--RASG-TSMGQPIND-YY 352
Query: 548 NILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNAST 607
GT+MA PHV+G AALL AHP W+P +++A++ TA IV +P DE A
Sbjct: 353 TAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIV----KP--DEIADIA-- 404
Query: 608 PYDFGAGHVNLDRA 621
+GAG VN +A
Sbjct: 405 ---YGAGRVNAYKA 415
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 54/137 (39%), Gaps = 10/137 (7%)
Query: 214 SPRDADGHGTHTASTAAGRHAFRASMEGYXXXXXXXXXXXXRLAVYKVCWKNAGCFDSDI 273
+P D +GHGTH AS AAG A AS Y +L KV SDI
Sbjct: 173 TPYDDNGHGTHVASIAAGTGA--ASNGKY-----KGMAPGAKLVGIKVLNGQGSGSISDI 225
Query: 274 LAAFDAAV-NXXXXXXXXXXXXXXXXXXPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNG 332
+ D AV N D ++ A G+ V +AGN GPN
Sbjct: 226 INGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNK 285
Query: 333 MSVTN--LAPWIVTVGA 347
+V + A ++TVGA
Sbjct: 286 YTVGSPAAASKVITVGA 302
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ SGTSMA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIC-------------STLPGNKYGAKSGTSMASP 216
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + NS
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNS 251
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 32/125 (25%)
Query: 498 VASFSARGP-NGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMA 556
V S + R P + + PE+ D++APGV+I S L ++ LSGTSMA
Sbjct: 171 VDSSNQRAPFSSVGPEL---DVMAPGVSIC-------------STLPGGKYGALSGTSMA 214
Query: 557 CPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHV 616
PHV+GAAAL+ S HP+W+ +RS++ TA+ + +S + +G G +
Sbjct: 215 SPHVAGAAALILSKHPNWTNTQVRSSLENTATKLGDS---------------FYYGKGLI 259
Query: 617 NLDRA 621
N++ A
Sbjct: 260 NVEAA 264
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIX-------------STLPGNKYGAYSGTSMASP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTYLGDS 260
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ +GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-------------QSTLPGNKYGAYNGTSMASP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS 260
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ +GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-------------QSTLPGNKYGAYNGTSMASP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS 260
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIX-------------STLPGNKYGAYSGTSMASP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-------------QSTLPGNKYGAKSGTSMASP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 36/123 (29%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ SGTSMA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIC-------------STLPGNKYGAKSGTSMASP 216
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNL 618
HV+GAAAL+ S HP+W+ +RS++ T + + +S + +G G +N+
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS---------------FYYGKGLINV 261
Query: 619 DRA 621
+ A
Sbjct: 262 EAA 264
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 32/125 (25%)
Query: 498 VASFSARGP-NGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMA 556
V S + R P + + PE+ D++APGV+I S L ++ LSGT+MA
Sbjct: 171 VDSSNQRAPFSSVGPEL---DVMAPGVSIC-------------STLPGGKYGALSGTAMA 214
Query: 557 CPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHV 616
PHV+GAAAL+ S HP+W+ +RS++ TA+ + +S + +G G +
Sbjct: 215 SPHVAGAAALILSKHPNWTNTQVRSSLENTATKLGDS---------------FYYGKGLI 259
Query: 617 NLDRA 621
N++ A
Sbjct: 260 NVEAA 264
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIC-------------STLPGNKYGAKSGTSMASP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ +GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-------------QSTLPGNKYGAYNGTSMASP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ +GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-------------QSTLPGNKYGAYNGTSMASP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 36/123 (29%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I+ S L ++ SGT+MA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIV-------------STLPGNKYGAKSGTAMASP 216
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNL 618
HV+GAAAL+ S HP+W+ +RS++ T + + +S + +G G +N+
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS---------------FYYGKGLINV 261
Query: 619 DRA 621
+ A
Sbjct: 262 EAA 264
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 36/123 (29%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ +GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-------------QSTLPGNKYGAYNGTSMASP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNL 618
HV+GAAAL+ S HP+W+ +RS++ T + + +S + +G G +N+
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS---------------FYYGKGLINV 270
Query: 619 DRA 621
+ A
Sbjct: 271 EAA 273
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I+ S L ++ SGT+MA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIV-------------STLPGNKYGAKSGTAMASP 216
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + +S
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 251
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIC-------------STLPGNKYGAKSGTSMASP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ SGT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-------------QSTLPGNKYGAYSGTXMASP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ SGT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-------------QSTLPGNKYGAYSGTXMASP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ SGT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-------------QSTLPGNKYGAKSGTXMASP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 36/123 (29%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I W S L ++ SGT MA P
Sbjct: 175 ASFSSVGP--------ELDVMAPGVSI---W----------STLPGNKYGAKSGTXMASP 213
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNL 618
HV+GAAAL+ S HP+W+ +RS++ T + + +S + +G G +N+
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS---------------FYYGKGLINV 258
Query: 619 DRA 621
+ A
Sbjct: 259 EAA 261
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 36/123 (29%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ SGT MA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIC-------------STLPGNKYGAKSGTXMASP 216
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNL 618
HV+GAAAL+ S HP+W+ +RS++ T + + +S + +G G +N+
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS---------------FYYGKGLINV 261
Query: 619 DRA 621
+ A
Sbjct: 262 EAA 264
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ +GT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-------------QSTLPGNKYGAYNGTXMASP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ +GT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-------------QSTLPGNKYGAYNGTXMASP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
D++APGVN+ S + + L+GTSMA PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNV-------------QSTYPGSTYASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 577 AAIRSAMMTTASIVDNSN 594
IR+ + TA+ + N+N
Sbjct: 238 VQIRNHLKNTATGLGNTN 255
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
D++APGVN+ S + + L+GTSMA PHV+GAAAL+K +P WS
Sbjct: 191 DIVAPGVNV-------------QSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 577 AAIRSAMMTTASIVDNSN 594
IR+ + TA+ + ++N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
D++APGVN+ S + + L+GTSMA PHV+GAAAL+K +P WS
Sbjct: 191 DIVAPGVNV-------------QSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 577 AAIRSAMMTTASIVDNSN 594
IR+ + TA+ + ++N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
D++APGVN+ S + + L+GTSMA PHV+GAAAL+K +P WS
Sbjct: 191 DIVAPGVNV-------------QSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 577 AAIRSAMMTTASIVDNSN 594
IR+ + TA+ + ++N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
D++APGVN+ S + + L+GTSMA PHV+GAAAL+K +P WS
Sbjct: 191 DIVAPGVNV-------------QSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 577 AAIRSAMMTTASIVDNSN 594
IR+ + TA+ + ++N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
D++APGVN+ S + + L+GTSMA PHV+GAAAL+K +P WS
Sbjct: 191 DIVAPGVNV-------------QSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 577 AAIRSAMMTTASIVDNSN 594
IR+ + TA+ + ++N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ GP + D++APGV+I S L ++ +GTS A P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-------------QSTLPGNKYGAYNGTSXASP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+W+ +RS++ T + + +S
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS 260
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ G + D++APGV+I S L + +GT MA P
Sbjct: 187 ASFSSVGS--------ELDVMAPGVSI-------------QSTLPGGTYGAYNGTXMATP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP W+ A +R + +TA+ + NS
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ G + D++APGV+I S L + +GT MA P
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSI-------------QSTLPGGTYGAYNGTCMATP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP W+ A +R + +TA+ + NS
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
D++APGVN+ S + + L+GT MA PHV+GAAAL+K +P WS
Sbjct: 191 DIVAPGVNV-------------QSTYPGSTYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 577 AAIRSAMMTTASIVDNSN 594
IR+ + TA+ + ++N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
D++APGVN+ S + + L+GT MA PHV+GAAAL+K +P WS
Sbjct: 191 DIVAPGVNV-------------QSTYPGSTYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 577 AAIRSAMMTTASIVDNSN 594
IR+ + TA+ + ++N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
D++APGVN+ S + + L+GT MA PHV+GAAAL+K +P WS
Sbjct: 191 DIVAPGVNV-------------QSTYPGSTYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 577 AAIRSAMMTTASIVDNSN 594
IR+ + TA+ + ++N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ G + D++APGV+I S L + +GTSMA P
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSI-------------QSTLPGGTYGAYNGTSMATP 225
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP W+ A +R + +TA+ + +S
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGSS 260
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
D++APGVN+ S + + L+GT MA PHV+GAAAL+K +P WS
Sbjct: 191 DIVAPGVNV-------------QSTYPGSTYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 577 AAIRSAMMTTASIVDNSN 594
IR+ + TA+ + ++N
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 526 LAAWTEAVGP-TGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMM 584
+ A E + P G+ S + L+GTSMA PHV+GAAAL+ S HP+ S + +R+ +
Sbjct: 192 VGAELEVMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLS 251
Query: 585 TTASIVDNS 593
+TA+ + +S
Sbjct: 252 STATYLGSS 260
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 526 LAAWTEAVGP-TGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMM 584
+ A E + P G+ S + L+GTSMA PHV+GAAAL+ S HP+ S + +R+ +
Sbjct: 192 VGAELEVMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLS 251
Query: 585 TTASIVDNS 593
+TA+ + +S
Sbjct: 252 STATYLGSS 260
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 526 LAAWTEAVGP-TGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMM 584
+ A E + P G+ S + L+GTSMA PHV+GAAAL+ S HP+ S + +R+ +
Sbjct: 191 VGAELEVMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLS 250
Query: 585 TTASIVDNS 593
+TA+ + +S
Sbjct: 251 STATYLGSS 259
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ G + +++APG + + + PT + L+GTSMA P
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTY-----PT--------NTYATLNGTSMASP 224
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNS 593
HV+GAAAL+ S HP+ S + +R+ + +TA+ + +S
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS 259
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 526 LAAWTEAVGP-TGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMM 584
+ A E + P G+ S + L+GTSMA PHV+GAAAL+ S HP+ S + +R+ +
Sbjct: 191 VGAELEVMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLS 250
Query: 585 TTASIVDNS 593
+TA+ + +S
Sbjct: 251 STATYLGSS 259
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 526 LAAWTEAVGP-TGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMM 584
+ A E + P G+ S + L+GTSMA PHV+GAAAL+ S HP+ S + +R+ +
Sbjct: 191 VGAELEVMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLS 250
Query: 585 TTASIVDNS 593
+TA+ + +S
Sbjct: 251 STATYLGSS 259
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
D+ APG +I ++W + T N +SGTSMA PHV+G AAL +P+ SP
Sbjct: 198 DIYAPGSSITSSWYTSNSAT-----------NTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 577 AAIRSAMMTTASIVDNSNQPMTDEATG 603
A + + + T A+ +TD TG
Sbjct: 247 AQVTNLLKTRATA-----DKVTDAKTG 268
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 11/72 (15%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
DL APG +I +AW + T L+GTSMA PHV+G AAL +P +P
Sbjct: 196 DLFAPGASIPSAWYTS-----------DTATQTLNGTSMATPHVAGVAALYLEQNPSATP 244
Query: 577 AAIRSAMMTTAS 588
A++ SA++ A+
Sbjct: 245 ASVASAILNGAT 256
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 526 LAAWTEAVGP-TGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMM 584
+ A E + P G+ S + L+GT MA PHV+GAAAL+ S HP+ S + +R+ +
Sbjct: 191 VGAELEVMAPGAGVYSTYPTNTYATLNGTXMASPHVAGAAALILSKHPNLSASQVRNRLS 250
Query: 585 TTASIVDNS 593
+TA+ + +S
Sbjct: 251 STATYLGSS 259
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 36/123 (29%)
Query: 499 ASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACP 558
ASFS+ G + +++APGV++ + + P+ + L+GTSMA P
Sbjct: 186 ASFSSVGS--------ELEVMAPGVSVYSTY-----PS--------NTYTSLNGTSMASP 224
Query: 559 HVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNL 618
HV+GAAAL+ S +P S + +R+ + +TA+ N + +G G +N+
Sbjct: 225 HVAGAAALILSKYPTLSASQVRNRLSSTAT---------------NLGDSFYYGKGLINV 269
Query: 619 DRA 621
+ A
Sbjct: 270 EAA 272
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 540 SDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTA 587
S+ ++ +GTSMA PHVSG A L+ S HP+ S + +R+A+ TA
Sbjct: 355 SNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATA 402
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 24/99 (24%)
Query: 497 VVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRK---TEFNILSGT 553
+ ASFS G + DL APG +IL+ +DS R+ ++ ++GT
Sbjct: 233 IRASFSNYG--------VDVDLAAPGQDILST---------VDSGTRRPVSDAYSFMAGT 275
Query: 554 SMACPHVSGAAALLKSA----HPDWSPAAIRSAMMTTAS 588
SMA PHVSG AAL+ SA + + +PA ++ +++T S
Sbjct: 276 SMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTS 314
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 24/99 (24%)
Query: 497 VVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRK---TEFNILSGT 553
+ ASFS G + DL APG +IL+ +DS R+ ++ ++GT
Sbjct: 233 IRASFSNYG--------VDVDLAAPGQDILST---------VDSGTRRPVSDAYSFMAGT 275
Query: 554 SMACPHVSGAAALLKSA----HPDWSPAAIRSAMMTTAS 588
SMA PHVSG AAL+ SA + + +PA ++ +++T S
Sbjct: 276 SMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTS 314
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 24/99 (24%)
Query: 497 VVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRK---TEFNILSGT 553
+ ASFS G + DL APG +IL+ +DS R+ ++ ++GT
Sbjct: 233 IRASFSNYG--------VDVDLAAPGQDILST---------VDSGTRRPVSDAYSFMAGT 275
Query: 554 SMACPHVSGAAALLKSA----HPDWSPAAIRSAMMTTAS 588
SMA PHVSG AAL+ SA + + +PA ++ +++T S
Sbjct: 276 SMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTS 314
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 520 APGVNILAA--WTEAVGPTGLDSDLRKTE---FNILSGTSMACPHVSGAAALLKSAHPDW 574
APGV IL+ +++G G + ++ T ++ GTSMA PHV+G A+L P+
Sbjct: 342 APGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNA 401
Query: 575 SPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNLDRAM 622
P IR + TA + GN +D G G V LD A+
Sbjct: 402 KPWQIRKLLENTAF-----------DFNGNGWD-HDTGYGLVKLDAAL 437
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 549 ILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPM 597
+++GTS A P SGA ALL SA+PD S +R + +A+ VD +QP+
Sbjct: 331 VMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPV 379
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 93/225 (41%), Gaps = 39/225 (17%)
Query: 408 VRGKIVICDRGSSPRXXXXXXXXXXXXXXMILANGISNGEGL-VGDAHLLPACALGSDEG 466
V+GKI + +RG +++ + G + + + +PA + +G
Sbjct: 288 VKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG 347
Query: 467 DAVKAYISSTANPTATIDFKGT--ILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVN 524
+K N TI F T +L ++ FS+ G +KPD+ APG +
Sbjct: 348 LLLKD------NSKKTITFNATPKVLPTASDTKLSRFSSWGLTADGN--IKPDIAAPGQD 399
Query: 525 ILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLK----SAHPDWSPAA-- 578
IL S + ++ LSGTSM+ P V+G LL+ + +PD +P+
Sbjct: 400 IL-------------SSVANNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERL 446
Query: 579 --IRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNLDRA 621
+ +M++A+ + DE +P GAG V+ +A
Sbjct: 447 DLAKKVLMSSAT-------ALYDEDEKAYFSPRQQGAGAVDAKKA 484
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
++ APG ++ + W +N +SGTSMA PHVSG AA + + +P S
Sbjct: 226 EISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSN 272
Query: 577 AAIRSAMMTTASIVD 591
+RS + A VD
Sbjct: 273 TQLRSNLQERAKSVD 287
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 124/332 (37%), Gaps = 57/332 (17%)
Query: 314 AASRGVFVSSSAGNDGPNG---------------MSVTNLAPWIVTVGAGTIDRNFPAEV 358
A S+GV + +SAGND G + A +TV + + D+ V
Sbjct: 177 AKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETV 236
Query: 359 RLGDGRRLSGVSLYAGAPLSEKMYPLI-----YPGKSGVLSASLCMENSLDPNLVRGKIV 413
R+ A +K P++ P K+ + + D V+GKI
Sbjct: 237 RV------------KTADQQDKEXPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIA 284
Query: 414 ICDRGSSPRXXXXXXXXXXXXXXMILANGISNGEGL-VGDAHLLPACALGSDEGDAVKAY 472
+ +RG +++ + G + + + PA + +G +K
Sbjct: 285 LIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQXPAAFISRKDGLLLKD- 343
Query: 473 ISSTANPTATIDFKGT--ILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWT 530
NP TI F T +L ++ FS+ G +KPD+ APG +IL
Sbjct: 344 -----NPQKTITFNATPKVLPTASGTKLSRFSSWGLTADGN--IKPDIAAPGQDIL---- 392
Query: 531 EAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTA-SI 589
S + ++ LSGTS + P V+G LL+ + P S + A +
Sbjct: 393 ---------SSVANNKYAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPSERLDLAKKV 443
Query: 590 VDNSNQPMTDEATGNASTPYDFGAGHVNLDRA 621
+ +S + DE +P GAG V+ +A
Sbjct: 444 LXSSATALYDEDEKAYFSPRQQGAGAVDAKKA 475
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 23/74 (31%)
Query: 498 VASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMAC 557
+ASFS R +P++ APGV+IL+ + + + L GT+MA
Sbjct: 213 IASFSNR----------QPEVSAPGVDILSTYPD-------------DSYETLMGTAMAT 249
Query: 558 PHVSGAAALLKSAH 571
PHVSG AL+++A+
Sbjct: 250 PHVSGVVALIQAAY 263
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 23/74 (31%)
Query: 498 VASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMAC 557
+ASFS R +P++ APGV+IL+ + + + L GT+MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPD-------------DSYETLMGTAMAT 247
Query: 558 PHVSGAAALLKSAH 571
PHVSG AL+++A+
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 23/74 (31%)
Query: 498 VASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMAC 557
+ASFS R +P++ APGV+IL+ + + + L GT+MA
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTYPD-------------DSYETLMGTAMAT 258
Query: 558 PHVSGAAALLKSAH 571
PHVSG AL+++A+
Sbjct: 259 PHVSGVVALIQAAY 272
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 23/74 (31%)
Query: 498 VASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMAC 557
+ASFS R +P++ APGV+IL+ + + + L GT+MA
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTYPD-------------DSYETLMGTAMAT 258
Query: 558 PHVSGAAALLKSAH 571
PHVSG AL+++A+
Sbjct: 259 PHVSGVVALIQAAY 272
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 23/74 (31%)
Query: 498 VASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMAC 557
+ASFS R +P++ APGV+IL+ + + + L GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPD-------------DSYETLMGTAMAT 327
Query: 558 PHVSGAAALLKSAH 571
PHVSG AL+++A+
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 23/74 (31%)
Query: 498 VASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMAC 557
+ASFS R +P++ APGV+IL+ + + + L GT+MA
Sbjct: 288 IASFSNR----------QPEVSAPGVDILSTYPD-------------DSYETLMGTAMAT 324
Query: 558 PHVSGAAALLKSAH 571
PHVSG AL+++A+
Sbjct: 325 PHVSGVVALIQAAY 338
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 23/74 (31%)
Query: 498 VASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMAC 557
+ASFS R +P++ APGV+IL+ + + + L GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPD-------------DSYETLMGTAMAT 327
Query: 558 PHVSGAAALLKSAH 571
PHVSG AL+++A+
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 23/74 (31%)
Query: 498 VASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMAC 557
+ASFS R +P++ APGV+IL+ + + + L GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPD-------------DSYETLMGTAMAT 327
Query: 558 PHVSGAAALLKSAH 571
PHVSG AL+++A+
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 23/74 (31%)
Query: 498 VASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMAC 557
+ASFS R +P++ APGV+IL+ + + + L GT+MA
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPD-------------DSYETLMGTAMAT 327
Query: 558 PHVSGAAALLKSAH 571
PHVSG AL+++A+
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
++ APG ++ + W +N +SGT MA PHVSG AA + + +P S
Sbjct: 226 EISAPGSSVYSTWYNG-------------GYNTISGTXMATPHVSGLAAKIWAENPSLSN 272
Query: 577 AAIRSAMMTTASIVD 591
+RS + A VD
Sbjct: 273 TQLRSNLQERAKSVD 287
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 23/74 (31%)
Query: 498 VASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMAC 557
+ASFS R +P++ APGV+IL+ + + + L GT MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPD-------------DSYETLMGTXMAT 247
Query: 558 PHVSGAAALLKSAH 571
PHVSG AL+++A+
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 23/74 (31%)
Query: 498 VASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMAC 557
+ASFS R +P++ APGV+IL+ + + + L GT MA
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPD-------------DSYETLMGTCMAT 247
Query: 558 PHVSGAAALLKSAH 571
PHVSG AL+++A+
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 498 VASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMAC 557
VA FS+RGP +KPD++APG IL+A ++ P +++ + GTSMA
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSA-RSSLAPDSSFWANHDSKYAYMGGTSMAT 258
Query: 558 PHVSGAAALLK 568
P V+G A L+
Sbjct: 259 PIVAGNVAQLR 269
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 15/71 (21%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
D++APGV+I+ S + + +SGTSMA PHV+G AALL S +
Sbjct: 202 DVVAPGVDIV-------------STITGNRYAYMSGTSMASPHVAGLAALLASQGRN--N 246
Query: 577 AAIRSAMMTTA 587
IR A+ TA
Sbjct: 247 IEIRQAIEQTA 257
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 518 LIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSA 570
L APG NIL+ T VG G ++ + + +GTSMA PHVSG AAL+ SA
Sbjct: 247 LAAPGTNILS--TIDVGQAGP----VRSSYGMKAGTSMAAPHVSGVAALVISA 293
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
DL APG I +AW + + +SGTSMA PHV+G AAL + +P
Sbjct: 196 DLFAPGSQIKSAWYDG-------------GYKTISGTSMATPHVAGVAALYLQENNGLTP 242
Query: 577 AAIRSAMMTTAS 588
+ + + AS
Sbjct: 243 LQLTGLLNSRAS 254
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 518 LIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSA 570
L APG NIL+ T VG G ++ + + +GTSMA PHVSG AAL+ SA
Sbjct: 247 LAAPGTNILS--TIDVGQAGP----VRSSYGMKAGTSMAAPHVSGVAALVISA 293
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 498 VASFSARGPNGLNPE--ILKPD--LIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGT 553
VA FS+RG + I K D + APG + + W + + +SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDG-------------GYATISGT 248
Query: 554 SMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVD 591
SMA PH +G AA + + P S +R + T AS+ D
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND 286
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALL 567
D+ APG NIL+ W +G T N +SGTSMA PH+ G A L
Sbjct: 203 DIFAPGSNILSTW---IGGT----------TNTISGTSMATPHIVGLGAYL 240
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 14/81 (17%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
D+ PG +IL+ W + R +SGTSMA PHV+G AA L + +
Sbjct: 200 DIFGPGTDILSTW--------IGGSTRS-----ISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 577 AAIRSAMMTTASIVDNSNQPM 597
+A R + TA+ D SN P
Sbjct: 247 SACR-YIADTANKGDLSNIPF 266
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 16/64 (25%)
Query: 510 NPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKS 569
N EI D++APGV I + + LDS + LSGT+MA PHV+GA AL+ +
Sbjct: 222 NEEI---DIVAPGVGIKSTY--------LDSGYAE-----LSGTAMAAPHVAGALALIIN 265
Query: 570 AHPD 573
D
Sbjct: 266 LAED 269
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 17/80 (21%)
Query: 548 NILSGTSMACPHVSGAAAL----LKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATG 603
+ +GTS A PHV+GA AL LK + ++SP +I+ A+ TA+ + +
Sbjct: 456 QLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVD--------- 506
Query: 604 NASTPYDFGAGHVNLDRAMD 623
P+ G G +N+++A +
Sbjct: 507 ----PFAQGHGLLNVEKAFE 522
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 16/64 (25%)
Query: 510 NPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKS 569
N EI D++APGV I + + LDS + LSGT+MA PHV+GA AL+ +
Sbjct: 222 NEEI---DIVAPGVGIKSTY--------LDSGYAE-----LSGTAMAAPHVAGALALIIN 265
Query: 570 AHPD 573
D
Sbjct: 266 LAED 269
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 14/81 (17%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
D+ PG +IL+ W + R +SGTSMA PHV+G AA L + +
Sbjct: 200 DIFGPGTSILSTW--------IGGSTRS-----ISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 577 AAIRSAMMTTASIVDNSNQPM 597
+A R + TA+ D SN P
Sbjct: 247 SACR-YIADTANKGDLSNIPF 266
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 16/64 (25%)
Query: 510 NPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKS 569
N EI D++APGV I + + LDS + LSGT+MA PHV+GA AL+ +
Sbjct: 204 NEEI---DIVAPGVGIKSTY--------LDSGYAE-----LSGTAMAAPHVAGALALIIN 247
Query: 570 AHPD 573
D
Sbjct: 248 LAED 251
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 16/64 (25%)
Query: 510 NPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKS 569
N EI D++APGV I + + LDS + LSGT+MA PHV+GA AL+ +
Sbjct: 222 NEEI---DIVAPGVGIKSTY--------LDSGYAE-----LSGTAMAAPHVAGALALIIN 265
Query: 570 AHPD 573
D
Sbjct: 266 LAED 269
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 14/81 (17%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
D+ PG +IL+ W + R +SGTSMA PHV+G AA L + +
Sbjct: 200 DIFGPGTSILSTW--------IGGSTRS-----ISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 577 AAIRSAMMTTASIVDNSNQPM 597
+A R + TA+ D SN P
Sbjct: 247 SACR-YIADTANKGDLSNIPF 266
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 15/71 (21%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576
D+ APG +W + PT + + LSGTSMA PHV+G A LL S S
Sbjct: 201 DVAAPG-----SWIYSTYPT--------STYASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 577 AAIRSAMMTTA 587
+ IR+A+ TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 528 AWTEAVGP-TGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTT 586
+W + P + + S + + LSGTSMA PHV+G A LL S S + IR+A+ T
Sbjct: 198 SWVDVAAPGSSIYSTYPTSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENT 255
Query: 587 A 587
A
Sbjct: 256 A 256
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 498 VASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMAC 557
VA FS+RGP +KPD++APG IL+A ++ P +++ GTS A
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSA-RSSLAPDSSFWANHDSKYAYXGGTSXAT 258
Query: 558 PHVSGAAALLK 568
P V+G A L+
Sbjct: 259 PIVAGNVAQLR 269
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 13/51 (25%)
Query: 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALL 567
D+ APG +I + W N +SGTSMA PH++G AA L
Sbjct: 201 DIFAPGTSITSTWIGG-------------RTNTISGTSMATPHIAGLAAYL 238
>pdb|2JZL|A Chain A, Structure Of Nccvnh (N. Crassa Cvnh) (Casp Target)
Length = 114
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 94 HPSVLAVIEDQRRQLHTTRSPQFLGLRNQQGLWSESDYGSDVIIG 138
H S ED R ++ R+ F LR + G W+++ Y D IIG
Sbjct: 3 HMSFHVTAEDARIEVRDNRTILFARLRREDGEWNDASYELDQIIG 47
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 21/80 (26%)
Query: 515 KPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAH--- 571
K ++APG +IL A P G +R LSGTS A P VSG AALL S
Sbjct: 198 KQGILAPGKDILGA-----KPNG--GTIR------LSGTSFATPIVSGVAALLLSLQIKR 244
Query: 572 ---PDWSPAAIRSAMMTTAS 588
PD P +++A++ +A+
Sbjct: 245 GEKPD--PQKVKNALLASAT 262
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 16/81 (19%)
Query: 515 KPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDW 574
K ++APG IL A P L +GTSMA P ++G +ALL S
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 312
Query: 575 ----SPAAIRSAMMTTASIVD 591
A+R+A++ TA D
Sbjct: 313 GKPVDAEAVRTALLKTAIPCD 333
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 16/81 (19%)
Query: 515 KPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDW 574
K ++APG IL A P L +GTSMA P ++G +ALL S
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 312
Query: 575 ----SPAAIRSAMMTTASIVD 591
A+R+A++ TA D
Sbjct: 313 GKPVDAEAVRTALLKTAIPCD 333
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 16/81 (19%)
Query: 515 KPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDW 574
K ++APG IL A P L +GTSMA P ++G +ALL S
Sbjct: 247 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 294
Query: 575 ----SPAAIRSAMMTTASIVD 591
A+R+A++ TA D
Sbjct: 295 GKPVDAEAVRTALLKTAIPCD 315
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 39/81 (48%), Gaps = 21/81 (25%)
Query: 518 LIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAH------ 571
++APG +IL A P G TE LSGTS A P VSG AALL S
Sbjct: 198 ILAPGEDILGAK-----PGG------GTER--LSGTSFATPIVSGVAALLLSEQVRRGET 244
Query: 572 PDWSPAAIRSAMMTTASIVDN 592
PD P +R ++ +A D+
Sbjct: 245 PD--PQKVRQLLLQSALPCDD 263
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 39/81 (48%), Gaps = 21/81 (25%)
Query: 518 LIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAH------ 571
++APG +IL A P G TE LSGTS A P VSG AALL S
Sbjct: 207 ILAPGEDILGAK-----PGG------GTER--LSGTSFATPIVSGVAALLLSEQVRRGET 253
Query: 572 PDWSPAAIRSAMMTTASIVDN 592
PD P +R ++ +A D+
Sbjct: 254 PD--PQKVRQLLLQSALPCDD 272
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 11/136 (8%)
Query: 355 PAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVI 414
P+EV L G + +P S+ L+Y G L + + GKI +
Sbjct: 68 PSEVTLKIGTEKKEGEAFTYSPNSDVTAELVYVG--------LGTTADVAGKDLNGKIAL 119
Query: 415 CDRGSSPRXXXXXXXXXXXXXXMILAN---GISNGEGLVGDAHLLPACALGSDEGDAVKA 471
RG+ +I+ N G NG DA + A + EGDA+ A
Sbjct: 120 IQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAA 179
Query: 472 YISSTANPTATIDFKG 487
+ + TAT+ G
Sbjct: 180 NLRAGEKITATVKVAG 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,015,427
Number of Sequences: 62578
Number of extensions: 660769
Number of successful extensions: 1667
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1350
Number of HSP's gapped (non-prelim): 299
length of query: 625
length of database: 14,973,337
effective HSP length: 105
effective length of query: 520
effective length of database: 8,402,647
effective search space: 4369376440
effective search space used: 4369376440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)