Query 006930
Match_columns 625
No_of_seqs 369 out of 2162
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 16:31:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 2.8E-52 6.2E-57 429.2 29.0 305 106-588 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 5.4E-52 1.2E-56 442.4 22.1 297 115-623 294-613 (639)
3 cd05562 Peptidases_S53_like Pe 100.0 2.1E-50 4.6E-55 405.1 22.2 271 129-624 1-275 (275)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 3.6E-50 7.8E-55 400.8 22.3 244 126-591 1-254 (255)
5 cd07478 Peptidases_S8_CspA-lik 100.0 5.1E-49 1.1E-53 420.9 27.4 407 130-614 1-455 (455)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 5.1E-49 1.1E-53 412.8 26.5 313 125-623 2-346 (346)
7 cd07489 Peptidases_S8_5 Peptid 100.0 3.7E-49 8E-54 407.3 24.9 294 122-624 2-299 (312)
8 cd07497 Peptidases_S8_14 Pepti 100.0 4E-49 8.8E-54 401.6 22.9 290 132-587 1-311 (311)
9 cd07476 Peptidases_S8_thiazoli 100.0 9.3E-48 2E-52 385.1 23.0 249 125-593 2-255 (267)
10 cd05561 Peptidases_S8_4 Peptid 100.0 4E-47 8.6E-52 375.5 21.8 235 135-614 1-239 (239)
11 cd07474 Peptidases_S8_subtilis 100.0 1.6E-46 3.6E-51 385.3 25.6 291 132-621 1-295 (295)
12 cd07483 Peptidases_S8_Subtilis 100.0 7.1E-47 1.5E-51 384.9 21.9 276 133-588 1-291 (291)
13 KOG1153 Subtilisin-related pro 100.0 7.9E-47 1.7E-51 375.0 14.7 329 33-594 78-467 (501)
14 cd07481 Peptidases_S8_Bacillop 100.0 1.5E-45 3.3E-50 371.2 23.7 247 132-588 1-264 (264)
15 cd07493 Peptidases_S8_9 Peptid 100.0 3.3E-45 7.1E-50 368.2 23.5 246 134-588 1-261 (261)
16 cd07485 Peptidases_S8_Fervidol 100.0 4.5E-45 9.7E-50 369.6 22.2 264 124-586 1-273 (273)
17 cd07487 Peptidases_S8_1 Peptid 100.0 1.1E-44 2.3E-49 366.0 23.5 258 132-588 1-264 (264)
18 cd04857 Peptidases_S8_Tripepti 100.0 4.1E-44 8.8E-49 371.1 25.6 221 216-590 182-412 (412)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 7.3E-44 1.6E-48 357.5 23.1 233 125-589 17-255 (255)
20 cd07484 Peptidases_S8_Thermita 100.0 8.1E-44 1.8E-48 358.4 22.0 242 122-590 18-259 (260)
21 cd07496 Peptidases_S8_13 Pepti 100.0 1.8E-43 4E-48 360.1 23.9 208 213-586 65-285 (285)
22 cd04847 Peptidases_S8_Subtilis 100.0 9.5E-44 2E-48 363.3 20.3 233 215-588 34-291 (291)
23 cd04842 Peptidases_S8_Kp43_pro 100.0 3.4E-43 7.4E-48 360.5 23.6 278 128-588 2-293 (293)
24 cd07494 Peptidases_S8_10 Pepti 100.0 7E-43 1.5E-47 355.2 22.8 256 120-592 8-287 (298)
25 cd07490 Peptidases_S8_6 Peptid 100.0 8.1E-43 1.8E-47 350.0 22.6 253 134-588 1-254 (254)
26 cd07498 Peptidases_S8_15 Pepti 100.0 5.3E-43 1.1E-47 348.7 20.7 241 135-586 1-242 (242)
27 cd07480 Peptidases_S8_12 Pepti 100.0 1E-42 2.2E-47 356.4 21.5 269 127-620 2-297 (297)
28 cd04843 Peptidases_S8_11 Pepti 100.0 1E-42 2.2E-47 349.9 20.3 248 122-588 4-277 (277)
29 cd07473 Peptidases_S8_Subtilis 100.0 8.6E-42 1.9E-46 343.6 23.7 252 133-588 2-259 (259)
30 cd07477 Peptidases_S8_Subtilis 100.0 1.6E-41 3.6E-46 335.2 21.6 227 134-586 1-229 (229)
31 cd07491 Peptidases_S8_7 Peptid 100.0 1.2E-41 2.7E-46 336.6 18.3 160 132-349 2-170 (247)
32 cd07482 Peptidases_S8_Lantibio 100.0 5.9E-41 1.3E-45 344.2 21.4 211 213-586 47-294 (294)
33 PF00082 Peptidase_S8: Subtila 100.0 5.7E-42 1.2E-46 349.6 13.1 276 136-623 1-282 (282)
34 cd07492 Peptidases_S8_8 Peptid 100.0 1.5E-40 3.3E-45 326.3 21.2 222 134-588 1-222 (222)
35 cd04059 Peptidases_S8_Protein_ 100.0 1.3E-40 2.8E-45 341.9 18.7 254 121-588 27-297 (297)
36 cd04848 Peptidases_S8_Autotran 100.0 2.6E-39 5.6E-44 327.3 20.7 246 131-588 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 8.2E-40 1.8E-44 333.6 12.7 352 33-623 47-465 (1033)
38 cd07488 Peptidases_S8_2 Peptid 100.0 3.3E-34 7.1E-39 282.5 13.8 193 215-586 33-246 (247)
39 cd00306 Peptidases_S8_S53 Pept 100.0 5.7E-32 1.2E-36 268.5 21.6 197 214-586 39-241 (241)
40 KOG1114 Tripeptidyl peptidase 100.0 4.6E-32 1E-36 288.7 16.0 239 218-622 309-556 (1304)
41 KOG3526 Subtilisin-like propro 99.9 2.3E-27 4.9E-32 230.4 10.4 262 14-331 10-316 (629)
42 COG1404 AprE Subtilisin-like s 99.9 3.1E-24 6.6E-29 236.6 22.0 251 123-589 130-398 (508)
43 cd04056 Peptidases_S53 Peptida 99.8 6.2E-18 1.3E-22 177.2 16.3 103 247-353 83-199 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.1 8.4E-10 1.8E-14 99.9 12.9 117 378-507 24-141 (143)
45 cd02120 PA_subtilisin_like PA_ 99.0 8.6E-09 1.9E-13 91.4 13.6 121 358-481 2-124 (126)
46 KOG3525 Subtilisin-like propro 99.0 3.3E-09 7.1E-14 112.3 12.5 291 121-621 21-322 (431)
47 PF05922 Inhibitor_I9: Peptida 98.8 1.2E-08 2.6E-13 83.0 5.9 72 37-108 1-81 (82)
48 cd04816 PA_SaNapH_like PA_SaNa 98.6 6.7E-07 1.4E-11 78.6 13.3 99 380-481 17-120 (122)
49 cd02122 PA_GRAIL_like PA _GRAI 98.6 2.8E-07 6.1E-12 82.2 10.6 90 393-482 42-137 (138)
50 COG4934 Predicted protease [Po 98.6 5.5E-07 1.2E-11 102.7 15.4 96 248-347 289-395 (1174)
51 cd02129 PA_hSPPL_like PA_hSPPL 98.6 4.6E-07 9.9E-12 78.1 11.1 91 380-475 20-114 (120)
52 cd02124 PA_PoS1_like PA_PoS1_l 98.6 1.4E-06 3.1E-11 76.8 13.1 99 382-481 28-127 (129)
53 cd02127 PA_hPAP21_like PA_hPAP 98.5 6.9E-07 1.5E-11 77.5 10.7 88 395-483 21-116 (118)
54 cd04818 PA_subtilisin_1 PA_sub 98.5 1.4E-06 3.1E-11 76.1 10.4 89 393-482 25-117 (118)
55 cd02130 PA_ScAPY_like PA_ScAPY 98.4 4.3E-06 9.3E-11 73.5 13.3 96 380-482 22-121 (122)
56 cd02126 PA_EDEM3_like PA_EDEM3 98.4 1.4E-06 3E-11 76.8 9.9 86 395-481 27-124 (126)
57 cd02132 PA_GO-like PA_GO-like: 98.4 1.5E-06 3.1E-11 78.1 10.1 84 395-481 48-137 (139)
58 cd02125 PA_VSR PA_VSR: Proteas 98.4 2.2E-06 4.8E-11 75.4 10.0 89 394-482 21-126 (127)
59 PF02225 PA: PA domain; Inter 98.4 1E-06 2.2E-11 74.7 7.2 80 394-473 18-101 (101)
60 cd00538 PA PA: Protease-associ 98.3 5.7E-06 1.2E-10 73.1 10.1 88 394-481 29-124 (126)
61 cd04813 PA_1 PA_1: Protease-as 98.3 6E-06 1.3E-10 71.5 9.3 81 393-475 25-111 (117)
62 cd04817 PA_VapT_like PA_VapT_l 98.2 5.8E-06 1.2E-10 73.4 9.2 74 403-476 50-134 (139)
63 cd02123 PA_C_RZF_like PA_C-RZF 98.2 1.2E-05 2.6E-10 73.4 9.8 85 394-478 49-142 (153)
64 cd04819 PA_2 PA_2: Protease-as 97.9 0.00016 3.5E-09 63.8 12.0 92 379-478 22-122 (127)
65 cd04815 PA_M28_2 PA_M28_2: Pro 97.1 0.0027 5.8E-08 56.6 8.7 78 404-481 34-132 (134)
66 cd02128 PA_TfR PA_TfR: Proteas 96.0 0.029 6.3E-07 52.2 8.1 71 405-475 51-155 (183)
67 KOG2442 Uncharacterized conser 95.7 0.042 9E-07 57.5 8.3 81 405-485 91-177 (541)
68 cd04814 PA_M28_1 PA_M28_1: Pro 95.4 0.073 1.6E-06 47.6 7.8 64 380-445 20-101 (142)
69 KOG3920 Uncharacterized conser 94.7 0.041 8.9E-07 48.5 4.1 94 393-487 72-175 (193)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 94.7 0.11 2.4E-06 46.1 6.9 64 380-445 22-97 (137)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 94.1 0.27 5.9E-06 44.5 8.3 64 380-445 20-101 (151)
72 cd02131 PA_hNAALADL2_like PA_h 92.6 0.19 4.1E-06 44.9 4.7 40 406-445 37-76 (153)
73 KOG4628 Predicted E3 ubiquitin 92.3 0.45 9.8E-06 48.7 7.5 82 394-475 61-149 (348)
74 cd02121 PA_GCPII_like PA_GCPII 92.2 0.39 8.5E-06 46.3 6.7 58 380-445 45-107 (220)
75 KOG1114 Tripeptidyl peptidase 79.0 1.2 2.7E-05 50.6 2.3 24 129-152 77-100 (1304)
76 cd04821 PA_M28_1_2 PA_M28_1_2: 73.6 16 0.00035 33.3 7.6 63 380-444 22-103 (157)
77 PRK15019 CsdA-binding activato 42.0 27 0.00058 31.5 3.2 33 548-581 77-109 (147)
78 TIGR03391 FeS_syn_CsdE cystein 40.4 30 0.00064 30.9 3.2 35 547-582 71-105 (138)
79 PF13940 Ldr_toxin: Toxin Ldr, 39.4 29 0.00063 22.3 2.1 13 555-567 14-26 (35)
80 PF02845 CUE: CUE domain; Int 39.0 34 0.00073 23.3 2.7 26 564-589 5-30 (42)
81 COG2166 sufE Cysteine desulfur 38.0 32 0.0007 30.7 3.0 33 548-581 72-104 (144)
82 PRK09296 cysteine desufuration 37.0 36 0.00078 30.3 3.2 33 548-581 67-99 (138)
83 PRK14125 cell division suppres 35.7 45 0.00098 28.0 3.4 10 38-47 37-46 (103)
84 PF02657 SufE: Fe-S metabolism 34.2 44 0.00095 29.2 3.2 34 548-582 58-91 (125)
85 smart00546 CUE Domain that may 31.7 74 0.0016 21.7 3.4 27 563-589 5-31 (43)
86 PF04255 DUF433: Protein of un 30.1 50 0.0011 24.2 2.5 38 547-584 11-54 (56)
87 PF12273 RCR: Chitin synthesis 29.5 40 0.00087 29.6 2.3 21 5-25 1-21 (130)
88 PF09902 DUF2129: Uncharacteri 26.8 3E+02 0.0066 21.4 6.3 61 38-110 4-68 (71)
89 COG0065 LeuC 3-isopropylmalate 25.0 85 0.0018 32.9 3.9 60 495-567 354-413 (423)
90 PF08260 Kinin: Insect kinin p 23.2 40 0.00086 14.4 0.5 6 500-505 3-8 (8)
91 PF13955 Fst_toxin: Toxin Fst, 22.9 1.3E+02 0.0028 17.4 2.6 18 553-570 2-19 (21)
92 PRK02302 hypothetical protein; 21.8 3.2E+02 0.0069 22.3 5.8 68 36-115 8-79 (89)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.8e-52 Score=429.24 Aligned_cols=305 Identities=60% Similarity=0.990 Sum_probs=257.1
Q ss_pred cccccCCCcccccccccCCC--ccCCCCCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCccee
Q 006930 106 RQLHTTRSPQFLGLRNQQGL--WSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKII 183 (625)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~--~~~~~tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 183 (625)
++++..+++.++++...++. |..+++|+||+|||||||||++||+|.++...++...|.+.|..+..+....+++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 45677888889998877664 8889999999999999999999999999999999999999999988887778999999
Q ss_pred eeeeecccccccCCCCCCCCCCCCCccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeecc
Q 006930 184 GARFFSKGHEAAGGSAGPIGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCW 263 (625)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~ 263 (625)
+.++|..+++.... .....+...+.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++
T Consensus 81 g~~~~~~~~~~~~~--------~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~ 152 (307)
T cd04852 81 GARYFSDGYDAYGG--------FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCW 152 (307)
T ss_pred EEEEcccchhhccC--------cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEec
Confidence 99999886654322 1122344667889999999999999998766555565566679999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHcCCCEEEeccCCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCCcccCCCCceE
Q 006930 264 KNAGCFDSDILAAFDAAVNDGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIV 343 (625)
Q Consensus 264 ~~~~~~~~~i~~ai~~a~~~~~~VIn~S~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vi 343 (625)
.++.+..+++++||++|++++++|||||||... .....+.+..++.++.++|++||+||||+|......++..|+++
T Consensus 153 ~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~---~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi 229 (307)
T cd04852 153 PDGGCFGSDILAAIDQAIADGVDVISYSIGGGS---PDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVT 229 (307)
T ss_pred CCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeE
Confidence 867788899999999999999999999999883 34556778888888899999999999999988778888899999
Q ss_pred EeecCCCCCceeeEEEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchh
Q 006930 344 TVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRV 423 (625)
Q Consensus 344 tVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~ 423 (625)
+||+.+
T Consensus 230 ~Vga~~-------------------------------------------------------------------------- 235 (307)
T cd04852 230 TVAAST-------------------------------------------------------------------------- 235 (307)
T ss_pred EEEecc--------------------------------------------------------------------------
Confidence 999711
Q ss_pred hHHHHHHHcCceEEEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCC
Q 006930 424 AKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSA 503 (625)
Q Consensus 424 ~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs 503 (625)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCccccCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 006930 504 RGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAM 583 (625)
Q Consensus 504 ~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L 583 (625)
.||||+|||.+|++++..... .........|..++|||||||+|||++|||+|++|+++|+|||++|
T Consensus 236 ----------~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L 302 (307)
T cd04852 236 ----------LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSAL 302 (307)
T ss_pred ----------CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 467999999999998865311 1112223478999999999999999999999999999999999999
Q ss_pred Hhccc
Q 006930 584 MTTAS 588 (625)
Q Consensus 584 ~~tA~ 588 (625)
++||+
T Consensus 303 ~~tA~ 307 (307)
T cd04852 303 MTTAY 307 (307)
T ss_pred HHhcC
Confidence 99985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=5.4e-52 Score=442.43 Aligned_cols=297 Identities=21% Similarity=0.210 Sum_probs=214.7
Q ss_pred ccccccc--cCCCcc--CCCCCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecc
Q 006930 115 QFLGLRN--QQGLWS--ESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSK 190 (625)
Q Consensus 115 ~~~~~~~--~~~~~~--~~~tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~ 190 (625)
..|++.. ++++|+ .+.+|+||+|||||||||++||||.++-...+. ...|. .+++. . ++ +..+...
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~-el~Gr----dgiDd-D-~n---G~vdd~~ 363 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVK-ELHGR----KGIDD-D-NN---GNVDDEY 363 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccc-cccCc----ccccc-c-cC---Ccccccc
Confidence 3566654 345665 456799999999999999999999864211000 00000 00000 0 00 0111122
Q ss_pred cccccCCCCCCCCCCCCCccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCCh
Q 006930 191 GHEAAGGSAGPIGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFD 270 (625)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~ 270 (625)
+|++.+++ ..+.|.+||||||||||||.++++.+ +.||||+|+|+.+|+++..+.+..
T Consensus 364 G~nfVd~~--------------~~P~D~~GHGTHVAGIIAA~gnN~~G--------i~GVAP~AkLi~vKVld~~G~G~~ 421 (639)
T PTZ00262 364 GANFVNND--------------GGPMDDNYHGTHVSGIISAIGNNNIG--------IVGVDKRSKLIICKALDSHKLGRL 421 (639)
T ss_pred cccccCCC--------------CCCCCCCCcchHHHHHHhccccCCCc--------eeeeecccccceEEEecCCCCccH
Confidence 34443332 45688999999999999998765433 389999999999999998777889
Q ss_pred hhHHHHHHHHHHcCCCEEEeccCCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCCc--------------cc
Q 006930 271 SDILAAFDAAVNDGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMS--------------VT 336 (625)
Q Consensus 271 ~~i~~ai~~a~~~~~~VIn~S~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~ 336 (625)
+++++||+||++++++|||||||+.. +...+..++.+|.++|++||+||||++..... +|
T Consensus 422 sdI~~AI~yA~~~GA~VINmSlG~~~------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YP 495 (639)
T PTZ00262 422 GDMFKCFDYCISREAHMINGSFSFDE------YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYP 495 (639)
T ss_pred HHHHHHHHHHHHCCCCEEEeccccCC------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCC
Confidence 99999999999999999999999762 34567788889999999999999999864321 22
Q ss_pred C----CCCceEEeecCCCCCceeeEEEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceE
Q 006930 337 N----LAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKI 412 (625)
Q Consensus 337 ~----~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i 412 (625)
+ ..+++|+|||...+..
T Consensus 496 aa~s~~~~nVIaVGAv~~d~~----------------------------------------------------------- 516 (639)
T PTZ00262 496 PILSKKLRNVITVSNLIKDKN----------------------------------------------------------- 516 (639)
T ss_pred hhhhccCCCEEEEeeccCCCC-----------------------------------------------------------
Confidence 2 2456777776432110
Q ss_pred EEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecC
Q 006930 413 VICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGI 492 (625)
Q Consensus 413 ~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 492 (625)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcccccCCCCCCCCCCCCCCCccccCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCC
Q 006930 493 KPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHP 572 (625)
Q Consensus 493 ~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p 572 (625)
..-..+.+|+||.. ++||+|||.+|+|+.+.+ .|..++|||||||||||+||||++++|
T Consensus 517 -~~~s~s~~Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P 575 (639)
T PTZ00262 517 -NQYSLSPNSFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINP 575 (639)
T ss_pred -CcccccccccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCC
Confidence 00123556777632 249999999999998876 899999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccccccCCCCCCccCCCCCCCCCCcccc-cccCccccCC
Q 006930 573 DWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGA-GHVNLDRAMD 623 (625)
Q Consensus 573 ~lt~~~vk~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~-G~ld~~~Al~ 623 (625)
+|+++||+++|++||.+++.. +..+|| |+||+++||+
T Consensus 576 ~LT~~qV~~iL~~TA~~l~~~--------------~n~~~wgG~LDa~kAV~ 613 (639)
T PTZ00262 576 SLSYEEVIRILKESIVQLPSL--------------KNKVKWGGYLDIHHAVN 613 (639)
T ss_pred CCCHHHHHHHHHHhCccCCCC--------------CCccccCcEEcHHHHHH
Confidence 999999999999999887421 113333 8999999974
No 3
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=2.1e-50 Score=405.12 Aligned_cols=271 Identities=28% Similarity=0.274 Sum_probs=203.2
Q ss_pred CCCCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCC
Q 006930 129 SDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINE 208 (625)
Q Consensus 129 ~~tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (625)
|+||+||+|+|||||||.+||++.+...+.++..+ .+...
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~-----------------------~~~~~----------------- 40 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNV-----------------------NVLGD----------------- 40 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcce-----------------------eeccc-----------------
Confidence 57999999999999999999865432222111110 01110
Q ss_pred ccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHcCCCEE
Q 006930 209 TVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVI 288 (625)
Q Consensus 209 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~~~~VI 288 (625)
.....|..+||||||||| .||||+|+|+.+|+.. ..+++++||+|+++++++||
T Consensus 41 ---~~~~~d~~gHGT~vAgii------------------~GvAP~a~l~~~~~~~-----~~~~i~~ai~~a~~~g~~Vi 94 (275)
T cd05562 41 ---LDGGSGGGDEGRAMLEII------------------HDIAPGAELAFHTAGG-----GELDFAAAIRALAAAGADII 94 (275)
T ss_pred ---cCCCCCCCchHHHHHHHH------------------hccCCCCEEEEEecCC-----CHHHHHHHHHHHHHcCCCEE
Confidence 123457889999999999 4899999999998742 36789999999999999999
Q ss_pred EeccCCCCCCCCCC-CCChHHhhHHHhhhC-CcEEEEecCCCCCCCC-cccCCCCceEEeecCCCCCceeeEEEeCCCee
Q 006930 289 SISIGGGDGISSPY-YLDPIAIGSYGAASR-GVFVSSSAGNDGPNGM-SVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRR 365 (625)
Q Consensus 289 n~S~G~~~g~~~~~-~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~~-~~~~~~~~vitVga~~~~~~~~~~~~~~~~~~ 365 (625)
|||||.. ..++ ....+..++.++.++ |++||+||||++.... ..++..+++|+|||.+.+.......
T Consensus 95 n~S~g~~---~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------- 164 (275)
T cd05562 95 VDDIGYL---NEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------- 164 (275)
T ss_pred Eeccccc---CCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc-------
Confidence 9999987 3332 344677778888887 9999999999998643 4567889999999965433210000
Q ss_pred eeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCC
Q 006930 366 LSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (625)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~ 445 (625)
|..
T Consensus 165 --------------------------------~~~--------------------------------------------- 167 (275)
T cd05562 165 --------------------------------DPA--------------------------------------------- 167 (275)
T ss_pred --------------------------------ccc---------------------------------------------
Confidence 000
Q ss_pred CCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCccccCCCc-
Q 006930 446 GEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVN- 524 (625)
Q Consensus 446 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~- 524 (625)
. .......+.|+++||+.+ ++.||||+|||+.
T Consensus 168 ------------------------------------------~---~~~~s~~~~~~~~~p~~~--~~~~~di~Apgg~~ 200 (275)
T cd05562 168 ------------------------------------------P---GGTPSSFDPVGIRLPTPE--VRQKPDVTAPDGVN 200 (275)
T ss_pred ------------------------------------------c---CCCcccccCCcccCcCCC--CCcCCeEEcCCccc
Confidence 0 000013456788889876 7899999999764
Q ss_pred EEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCCCccCCCCC
Q 006930 525 ILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGN 604 (625)
Q Consensus 525 i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~tA~~~~~~~~~~~~~~~~~ 604 (625)
+.++...+ .|..++|||||||||||++|||+|++|+++++|||++|++||+++..
T Consensus 201 ~~~~~~~~-------------~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~------------ 255 (275)
T cd05562 201 GTVDGDGD-------------GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE------------ 255 (275)
T ss_pred ccCCCcCC-------------ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC------------
Confidence 34443333 78999999999999999999999999999999999999999998752
Q ss_pred CCCCCcccccccCccccCCC
Q 006930 605 ASTPYDFGAGHVNLDRAMDP 624 (625)
Q Consensus 605 ~~~~~~~G~G~ld~~~Al~~ 624 (625)
++++..||||+||+++||+.
T Consensus 256 ~g~d~~~G~G~vda~~Av~~ 275 (275)
T cd05562 256 PGYDNASGSGLVDADRAVAA 275 (275)
T ss_pred CCCCCCcCcCcccHHHHhhC
Confidence 23556999999999999974
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=3.6e-50 Score=400.79 Aligned_cols=244 Identities=29% Similarity=0.437 Sum_probs=199.3
Q ss_pred ccCCCCCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCC
Q 006930 126 WSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGG 205 (625)
Q Consensus 126 ~~~~~tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 205 (625)
|+.+++|+||+|||||||||.+||+|.+.. ...+|..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~--------------- 37 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN--------------- 37 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC---------------
Confidence 889999999999999999999999997310 0001111
Q ss_pred CCCccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHcCC
Q 006930 206 INETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGV 285 (625)
Q Consensus 206 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~~~ 285 (625)
.....|..+|||||||||+|+... +.||||+|+|+.+|++++++....++++++++|++++++
T Consensus 38 ------~~~~~d~~gHGT~VAGiIa~~~~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~ 100 (255)
T cd07479 38 ------EKTLDDGLGHGTFVAGVIASSREQ-----------CLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKI 100 (255)
T ss_pred ------CCCCCCCCCcHHHHHHHHHccCCC-----------ceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCC
Confidence 023457789999999999997421 379999999999999988666677889999999999999
Q ss_pred CEEEeccCCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCC--cccCCCCceEEeecCCCCCceeeEEEeCCC
Q 006930 286 DVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGM--SVTNLAPWIVTVGAGTIDRNFPAEVRLGDG 363 (625)
Q Consensus 286 ~VIn~S~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~~~vitVga~~~~~~~~~~~~~~~~ 363 (625)
+|||||||... +...++.+++.++.++|++||+||||++.... ..++..+++|+||+.+.
T Consensus 101 ~Vin~S~G~~~-----~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~------------- 162 (255)
T cd07479 101 DVLNLSIGGPD-----FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF------------- 162 (255)
T ss_pred CEEEeeccCCC-----CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-------------
Confidence 99999999862 23455666777888999999999999997533 35677789999998322
Q ss_pred eeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCC
Q 006930 364 RRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGI 443 (625)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~ 443 (625)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCC----CCCCCCCccc
Q 006930 444 SNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGL----NPEILKPDLI 519 (625)
Q Consensus 444 ~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPdi~ 519 (625)
.+.++.|||+|++.. ..+++||||+
T Consensus 163 ---------------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~ 191 (255)
T cd07479 163 ---------------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIV 191 (255)
T ss_pred ---------------------------------------------------CCccccccCCCCCcccccCCCCCcCccEE
Confidence 236789999996521 1278899999
Q ss_pred cCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCC----CCCHHHHHHHHHhcccccc
Q 006930 520 APGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHP----DWSPAAIRSAMMTTASIVD 591 (625)
Q Consensus 520 APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p----~lt~~~vk~~L~~tA~~~~ 591 (625)
|||.+|+++.... .|..++|||||||||||++|||+|++| .++|.+||++|++||++++
T Consensus 192 apG~~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 192 TYGSGVYGSKLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ecCCCeeccccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 9999999886654 788999999999999999999999998 7999999999999999875
No 5
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=5.1e-49 Score=420.91 Aligned_cols=407 Identities=26% Similarity=0.310 Sum_probs=237.0
Q ss_pred CCCCccEEEEcccccCCCCCCCCC-CCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCC
Q 006930 130 DYGSDVIIGVFDTGIWPERRSFSD-LNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINE 208 (625)
Q Consensus 130 ~tG~gv~VaVIDtGid~~Hp~f~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (625)
++|+||+|||||||||+.||+|.+ .+.+|+...||+....+..-.. ...+........+..... ..
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~--------~~ 67 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGG-----YYGGGEYTEEIINAALAS--------DN 67 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCcc-----ccCceEEeHHHHHHHHhc--------CC
Confidence 479999999999999999999997 6788999999998765322110 011111110000000000 11
Q ss_pred ccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCC----------CChhhHHHHHH
Q 006930 209 TVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAG----------CFDSDILAAFD 278 (625)
Q Consensus 209 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~----------~~~~~i~~ai~ 278 (625)
+.+.....|..||||||||||||+..++.+ +.||||+|+|+.+|++...+. +..++++.||+
T Consensus 68 p~~~~~~~D~~GHGThvAGIiag~~~~~~~--------~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~ 139 (455)
T cd07478 68 PYDIVPSRDENGHGTHVAGIAAGNGDNNPD--------FKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIK 139 (455)
T ss_pred ccccCcCCCCCCchHHHHHHHhcCCCCCCC--------ccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHH
Confidence 223345678999999999999999765333 389999999999999988543 56889999999
Q ss_pred HHHHc-----CCCEEEeccCCCCCCCCCCCCChHHhhHHHhhhC-CcEEEEecCCCCCCCCcccCC-----CCc--eEEe
Q 006930 279 AAVND-----GVDVISISIGGGDGISSPYYLDPIAIGSYGAASR-GVFVSSSAGNDGPNGMSVTNL-----APW--IVTV 345 (625)
Q Consensus 279 ~a~~~-----~~~VIn~S~G~~~g~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~-----~~~--vitV 345 (625)
|+++. .+.|||||||...| .....+.+++++..+.+. |++||+||||+|....+.... ... -+.|
T Consensus 140 ~~~~~a~~~~~p~VInlSlG~~~g--~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v 217 (455)
T cd07478 140 YLYDKALELNKPLVINISLGTNFG--SHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNV 217 (455)
T ss_pred HHHHHHHHhCCCeEEEEccCcCCC--CCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEE
Confidence 99974 46799999998742 333456777777777665 999999999999865444321 011 1233
Q ss_pred ecCCCCC----------ceeeEEEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCC-CCCCccCceEEE
Q 006930 346 GAGTIDR----------NFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENS-LDPNLVRGKIVI 414 (625)
Q Consensus 346 ga~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~~~~~g~i~~ 414 (625)
+...... .+...+..+.|+.......... ....+...+... ..|.... ..+..-...|.+
T Consensus 218 ~~~~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~---~~~~~~~~~~~t------~i~v~y~~~~~~~g~~~i~i 288 (455)
T cd07478 218 GEGEKGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIG---GSESYKFVFEGT------TVYVYYYLPEPYTGDQLIFI 288 (455)
T ss_pred CCCCcceEEEEecCCCCEEEEEEECCCCCccCccCcCCC---cceeEEEEECCe------EEEEEEcCCCCCCCCeEEEE
Confidence 3211100 0111111111111110000000 000011111100 0000000 011111111111
Q ss_pred EecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecce------
Q 006930 415 CDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGT------ 488 (625)
Q Consensus 415 ~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~------ 488 (625)
. .++ ...|.--+.++........+ ..++|.-.....+. .++. ++...|++.+.+
T Consensus 289 ~----------~~~-~~~GiW~i~~~~~~~~~g~~---~~Wlp~~~~~~~~t----~f~~--~~~~~tit~Pa~~~~vit 348 (455)
T cd07478 289 R----------FKN-IKPGIWKIRLTGVSITDGRF---DAWLPSRGLLSENT----RFLE--PDPYTTLTIPGTARSVIT 348 (455)
T ss_pred E----------ccC-CCccceEEEEEeccCCCceE---EEEecCcCcCCCCC----Eeec--CCCCceEecCCCCCCcEE
Confidence 1 000 01111111122211110000 01122111111100 0111 122334444432
Q ss_pred eecCc-CCCcccccCCCCCCCCCCCCCCCccccCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHH
Q 006930 489 ILGIK-PAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALL 567 (625)
Q Consensus 489 ~~~~~-~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 567 (625)
+.... ..+.++.|||+||+.+ +++||||+|||++|+++.+.+ .|..++|||||||||||++|||
T Consensus 349 Vga~~~~~~~~~~~Ss~G~~~~--~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl 413 (455)
T cd07478 349 VGAYNQNNNSIAIFSGRGPTRD--GRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALL 413 (455)
T ss_pred EEEEeCCCCcccCccCCCcCCC--CCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHH
Confidence 11222 2346999999999998 999999999999999999866 8999999999999999999999
Q ss_pred HHhC------CCCCHHHHHHHHHhccccccCCCCCCccCCCCCCCCCCccccc
Q 006930 568 KSAH------PDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAG 614 (625)
Q Consensus 568 ~~~~------p~lt~~~vk~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G 614 (625)
+|.+ |.+++++||++|+++|+++. +..+++++||||
T Consensus 414 ~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 414 LQWGIVRGNDPYLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred HHhchhccCCCCCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 9975 56799999999999999875 234678899998
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=5.1e-49 Score=412.84 Aligned_cols=313 Identities=30% Similarity=0.417 Sum_probs=232.6
Q ss_pred CccCCC-CCCccEEEEcccccCCCCCCCCCCCCCCCCC-----CccccccccccccccCCCcceeeeeeecccccccCCC
Q 006930 125 LWSESD-YGSDVIIGVFDTGIWPERRSFSDLNIGSIPS-----KWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGS 198 (625)
Q Consensus 125 ~~~~~~-tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 198 (625)
+|+.+. +|+||+|+|||||||++||+|.+....+... .+...+.. -...+.+.+++..++|..+.+.
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI---GYGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC---CCCcccccCCCeeEcCCCCCCc----
Confidence 688877 9999999999999999999998754433211 11111111 1112345566666666653211
Q ss_pred CCCCCCCCCCccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccC--CCCCChhhHHHH
Q 006930 199 AGPIGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWK--NAGCFDSDILAA 276 (625)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~--~~~~~~~~i~~a 276 (625)
.....+..+|||||||||+|...+..+ ...+.||||+|+|+.+|+++. ........++++
T Consensus 75 -------------~~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~a 136 (346)
T cd07475 75 -------------ILDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKA 136 (346)
T ss_pred -------------cCCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHH
Confidence 111457889999999999998765321 112489999999999999973 455777889999
Q ss_pred HHHHHHcCCCEEEeccCCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCCcc----------------cCCCC
Q 006930 277 FDAAVNDGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSV----------------TNLAP 340 (625)
Q Consensus 277 i~~a~~~~~~VIn~S~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~----------------~~~~~ 340 (625)
++++++.+++|||||||.... .......+..++.++.++|++||+||||++...... +...+
T Consensus 137 i~~a~~~g~~Vin~S~G~~~~--~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~ 214 (346)
T cd07475 137 IEDAVKLGADVINMSLGSTAG--FVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATAD 214 (346)
T ss_pred HHHHHHcCCCEEEECCCcCCC--CCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCC
Confidence 999999999999999999842 224456777788889999999999999998654321 23345
Q ss_pred ceEEeecCCCCCceeeEEEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCC
Q 006930 341 WIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSS 420 (625)
Q Consensus 341 ~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~ 420 (625)
++|+||+....
T Consensus 215 ~~i~Vga~~~~--------------------------------------------------------------------- 225 (346)
T cd07475 215 DVLTVASANKK--------------------------------------------------------------------- 225 (346)
T ss_pred CceEEeecccc---------------------------------------------------------------------
Confidence 66666653210
Q ss_pred chhhHHHHHHHcCceEEEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccc
Q 006930 421 PRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVAS 500 (625)
Q Consensus 421 ~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 500 (625)
......+.++.
T Consensus 226 ---------------------------------------------------------------------~~~~~~~~~~~ 236 (346)
T cd07475 226 ---------------------------------------------------------------------VPNPNGGQMSG 236 (346)
T ss_pred ---------------------------------------------------------------------cCCCCCCccCC
Confidence 00112346789
Q ss_pred cCCCCCCCCCCCCCCCccccCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHh----CCCCCH
Q 006930 501 FSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSA----HPDWSP 576 (625)
Q Consensus 501 fSs~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~lt~ 576 (625)
||++||+.+ +++||||+|||++|+++.... .|..++|||||||+|||++|||+|+ +|.|++
T Consensus 237 ~S~~G~~~~--~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~ 301 (346)
T cd07475 237 FSSWGPTPD--LDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSG 301 (346)
T ss_pred CcCCCCCcc--cCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCH
Confidence 999999987 899999999999999998765 7899999999999999999999998 788998
Q ss_pred HH----HHHHHHhccccccCCCCCCccCCCCCCCCCCcccccccCccccCC
Q 006930 577 AA----IRSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNLDRAMD 623 (625)
Q Consensus 577 ~~----vk~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~ld~~~Al~ 623 (625)
.+ ||++|++||.+.. .....+.++.+.++|+|+||+++||+
T Consensus 302 ~~~~~~ik~~l~~ta~~~~------~~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 302 EELVDLVKNLLMNTATPPL------DSEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHHHHHHHhcCCccc------ccCCCCccCCccccCcchhcHHHhhC
Confidence 77 7888888998522 11233566778899999999999986
No 7
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.7e-49 Score=407.28 Aligned_cols=294 Identities=35% Similarity=0.437 Sum_probs=231.1
Q ss_pred cCCCccCCCCCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCC
Q 006930 122 QQGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGP 201 (625)
Q Consensus 122 ~~~~~~~~~tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 201 (625)
++.+|+.+++|+||+|||||+|||++||+|.++..+ +.++.+.+++.......
T Consensus 2 v~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~~------ 54 (312)
T cd07489 2 VDKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYDG------ 54 (312)
T ss_pred hhhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCccccc------
Confidence 356899999999999999999999999999864211 11222333332211000
Q ss_pred CCCCCCCccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHH
Q 006930 202 IGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV 281 (625)
Q Consensus 202 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~ 281 (625)
.+...+...+.|..+|||||||||+++..+ .| +.||||+|+|+.+|++++.+......+++++++++
T Consensus 55 ----~~~~~~~~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~ 121 (312)
T cd07489 55 ----TNPPVPDDDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAY 121 (312)
T ss_pred ----ccCCCCCCCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 011223345667799999999999998754 12 38999999999999998766677788999999999
Q ss_pred HcCCCEEEeccCCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCC---cccCCCCceEEeecCCCCCceeeEE
Q 006930 282 NDGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGM---SVTNLAPWIVTVGAGTIDRNFPAEV 358 (625)
Q Consensus 282 ~~~~~VIn~S~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~~~vitVga~~~~~~~~~~~ 358 (625)
+++++|||||||... .+....+...+.++.++|+++|+||||++.... ..++..+++|+||+.+
T Consensus 122 ~~~~~iIn~S~g~~~----~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~--------- 188 (312)
T cd07489 122 EDGADVITASLGGPS----GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD--------- 188 (312)
T ss_pred hcCCCEEEeCCCcCC----CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------
Confidence 999999999999873 234467777778889999999999999987643 3356678889988721
Q ss_pred EeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEE
Q 006930 359 RLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMI 438 (625)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~ 438 (625)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCcc
Q 006930 439 LANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDL 518 (625)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi 518 (625)
+.||++||+.+ .+.||||
T Consensus 189 ------------------------------------------------------------~~~s~~g~~~~--~~~kpdv 206 (312)
T cd07489 189 ------------------------------------------------------------SYFSSWGPTNE--LYLKPDV 206 (312)
T ss_pred ------------------------------------------------------------CCccCCCCCCC--CCcCccE
Confidence 46899999987 8899999
Q ss_pred ccCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhccccccCCCCCC
Q 006930 519 IAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAH-PDWSPAAIRSAMMTTASIVDNSNQPM 597 (625)
Q Consensus 519 ~APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-p~lt~~~vk~~L~~tA~~~~~~~~~~ 597 (625)
+|||++++++++...+ .|..++|||||||+|||++|||+|++ |.+++++||++|++||.++.......
T Consensus 207 ~ApG~~i~~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~ 275 (312)
T cd07489 207 AAPGGNILSTYPLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTS 275 (312)
T ss_pred EcCCCCEEEeeeCCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCc
Confidence 9999999999877633 58999999999999999999999999 99999999999999999986543221
Q ss_pred ccCCCCCCCCCCcccccccCccccCCC
Q 006930 598 TDEATGNASTPYDFGAGHVNLDRAMDP 624 (625)
Q Consensus 598 ~~~~~~~~~~~~~~G~G~ld~~~Al~~ 624 (625)
.. ..+.++.++|||+||+++||+.
T Consensus 276 ~~---~~~~~~~~~G~G~vn~~~a~~~ 299 (312)
T cd07489 276 AL---PDLAPVAQQGAGLVNAYKALYA 299 (312)
T ss_pred cc---cCCCCHhhcCcceeeHHHHhcC
Confidence 11 1146677999999999999874
No 8
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4e-49 Score=401.59 Aligned_cols=290 Identities=30% Similarity=0.339 Sum_probs=191.0
Q ss_pred CCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCCccc
Q 006930 132 GSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVE 211 (625)
Q Consensus 132 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (625)
|+||+|+|||||||.+||||.++... .|... ++ ....+..+++.....
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~------~d---------~~~~~~~g~d~~~~~------------- 48 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLK------FD---------YKAYLLPGMDKWGGF------------- 48 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Ccccc------cC---------cCCCccCCcCCCCCc-------------
Confidence 79999999999999999999753211 00000 00 000112233322211
Q ss_pred cCCCCCCCCCccccchhhccccCCCCCccccc-CccccccCCccceeeeeeccCCCCCChhhHHH-------HHHHHH--
Q 006930 212 FMSPRDADGHGTHTASTAAGRHAFRASMEGYA-AGVAKGVAPKARLAVYKVCWKNAGCFDSDILA-------AFDAAV-- 281 (625)
Q Consensus 212 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~-~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~-------ai~~a~-- 281 (625)
...+.|.+||||||||||||+.++..+.+++. ...+.||||+|+|+.+|++...+......+.. +++|.+
T Consensus 49 ~~~~~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 128 (311)
T cd07497 49 YVIMYDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTG 128 (311)
T ss_pred cCCCCCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhcc
Confidence 12467899999999999999875433222110 12348999999999999997633332222222 444444
Q ss_pred HcCCCEEEeccCCCCCCCCCC--CCChHHhhHHH-hhhCCcEEEEecCCCCCCCC--cccCCCCceEEeecCCCCCceee
Q 006930 282 NDGVDVISISIGGGDGISSPY--YLDPIAIGSYG-AASRGVFVSSSAGNDGPNGM--SVTNLAPWIVTVGAGTIDRNFPA 356 (625)
Q Consensus 282 ~~~~~VIn~S~G~~~g~~~~~--~~~~~~~~~~~-a~~~Gi~vV~AAGN~g~~~~--~~~~~~~~vitVga~~~~~~~~~ 356 (625)
+++++|||||||........+ ..+........ +.++|+++|+||||+|.... ..++.++++|+|||++.....+.
T Consensus 129 ~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~ 208 (311)
T cd07497 129 GPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF 208 (311)
T ss_pred CCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch
Confidence 579999999999863100000 11222323322 24899999999999997543 45678899999999653221000
Q ss_pred EEEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceE
Q 006930 357 EVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVG 436 (625)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g 436 (625)
. ...+
T Consensus 209 ~-------------------------~~~~-------------------------------------------------- 213 (311)
T cd07497 209 Y-------------------------LFGY-------------------------------------------------- 213 (311)
T ss_pred h-------------------------hhcc--------------------------------------------------
Confidence 0 0000
Q ss_pred EEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCC
Q 006930 437 MILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKP 516 (625)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 516 (625)
.....+.++.||||||+.+ +++||
T Consensus 214 ------------------------------------------------------~~~~~~~~~~fSs~Gp~~~--g~~kP 237 (311)
T cd07497 214 ------------------------------------------------------LPGGSGDVVSWSSRGPSIA--GDPKP 237 (311)
T ss_pred ------------------------------------------------------ccCCCCCccccccCCCCcc--cCCCC
Confidence 0012357899999999997 99999
Q ss_pred ccccCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCC------CCCHHHHHHHHHhcc
Q 006930 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHP------DWSPAAIRSAMMTTA 587 (625)
Q Consensus 517 di~APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p------~lt~~~vk~~L~~tA 587 (625)
||+|||.+|+++.+...... ....+..|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 238 dv~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 238 DLAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred ceeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 99999999999876542100 011223789999999999999999999999876 589999999999997
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=9.3e-48 Score=385.09 Aligned_cols=249 Identities=27% Similarity=0.303 Sum_probs=204.0
Q ss_pred CccCCCCCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCC
Q 006930 125 LWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGG 204 (625)
Q Consensus 125 ~~~~~~tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 204 (625)
+|+.+++|+||+|||||+|||.+||+|.+...... ..+..
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~--------------------------~~~~~-------------- 41 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL--------------------------FTYAA-------------- 41 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc--------------------------cCccc--------------
Confidence 69999999999999999999999999985421110 00000
Q ss_pred CCCCccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCC-ChhhHHHHHHHHHHc
Q 006930 205 GINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGC-FDSDILAAFDAAVND 283 (625)
Q Consensus 205 ~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~-~~~~i~~ai~~a~~~ 283 (625)
......|..+|||||||||+|+..+ .+.||||+|+|+.+|++..++.. +..++++||+||+++
T Consensus 42 ------~~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~ 105 (267)
T cd07476 42 ------AACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQ 105 (267)
T ss_pred ------cCCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHC
Confidence 0123456789999999999987532 14799999999999999774443 367899999999999
Q ss_pred CCCEEEeccCCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCCcccCCCCceEEeecCCCCCceeeEEEeCCC
Q 006930 284 GVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPAEVRLGDG 363 (625)
Q Consensus 284 ~~~VIn~S~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVga~~~~~~~~~~~~~~~~ 363 (625)
+++|||||||... ........+.+++.++.++|+++|+||||++.....+++..+++|+||+.+.
T Consensus 106 g~~VIN~S~G~~~--~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 170 (267)
T cd07476 106 GAHIINISGGRLT--QTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD------------- 170 (267)
T ss_pred CCCEEEecCCcCC--CCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC-------------
Confidence 9999999999763 2233456678888889999999999999999887788888999999998432
Q ss_pred eeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCC
Q 006930 364 RRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGI 443 (625)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~ 443 (625)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCccccCCC
Q 006930 444 SNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGV 523 (625)
Q Consensus 444 ~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~ 523 (625)
.+.++.||++|+.. .||||+|||.
T Consensus 171 ---------------------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~ 194 (267)
T cd07476 171 ---------------------------------------------------DGLPLKFSNWGADY-----RKKGILAPGE 194 (267)
T ss_pred ---------------------------------------------------CCCeeeecCCCCCC-----CCceEEecCC
Confidence 12457799999864 3789999999
Q ss_pred cEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCC----CCHHHHHHHHHhccccccCC
Q 006930 524 NILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPD----WSPAAIRSAMMTTASIVDNS 593 (625)
Q Consensus 524 ~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~----lt~~~vk~~L~~tA~~~~~~ 593 (625)
+|+++.+.+ .|..++|||||||+|||++|||+|.+|. ++|++||++|++||+++...
T Consensus 195 ~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 195 NILGAALGG-------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred CceeecCCC-------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 999998775 7899999999999999999999999887 89999999999999998643
No 10
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4e-47 Score=375.47 Aligned_cols=235 Identities=32% Similarity=0.418 Sum_probs=193.1
Q ss_pred cEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCCccccCC
Q 006930 135 VIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFMS 214 (625)
Q Consensus 135 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (625)
|+|||||||||.+||+|.++... ..++.. ..
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~---------------------------~~~~~~----------------------~~ 31 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIA---------------------------RLFFAG----------------------PG 31 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccc---------------------------cccCCC----------------------CC
Confidence 79999999999999999753110 000100 13
Q ss_pred CCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCC---CCChhhHHHHHHHHHHcCCCEEEec
Q 006930 215 PRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNA---GCFDSDILAAFDAAVNDGVDVISIS 291 (625)
Q Consensus 215 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~---~~~~~~i~~ai~~a~~~~~~VIn~S 291 (625)
..|..+|||||||||++...+. .||||+|+|+.+|++...+ ..+..++++||+|+++++++|||||
T Consensus 32 ~~~~~~HGT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S 100 (239)
T cd05561 32 APAPSAHGTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNIS 100 (239)
T ss_pred CCCCCCCHHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeC
Confidence 4567899999999999986432 5999999999999998642 3567789999999999999999999
Q ss_pred cCCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCC-CcccCCCCceEEeecCCCCCceeeEEEeCCCeeeeeee
Q 006930 292 IGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNG-MSVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVS 370 (625)
Q Consensus 292 ~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~~ 370 (625)
||.. . ...+..++.++.++|++||+||||+|... ..+|+..+++|+|++.+.
T Consensus 101 ~g~~---~----~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~-------------------- 153 (239)
T cd05561 101 LAGP---P----NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA-------------------- 153 (239)
T ss_pred CCCC---C----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC--------------------
Confidence 9976 2 35677778889999999999999999764 356778899999998432
Q ss_pred cccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccc
Q 006930 371 LYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLV 450 (625)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~ 450 (625)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCccccCCCcEEeeec
Q 006930 451 GDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWT 530 (625)
Q Consensus 451 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~i~s~~~ 530 (625)
.+.+++||++|+.. ||+|||.+|+++.+
T Consensus 154 --------------------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~ 181 (239)
T cd05561 154 --------------------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAP 181 (239)
T ss_pred --------------------------------------------CCCccccCCCCCcc--------eEEccccceecccC
Confidence 13568899999976 99999999999876
Q ss_pred CCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCCCccCCCCCCCCCCc
Q 006930 531 EAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPYD 610 (625)
Q Consensus 531 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~ 610 (625)
.+ .|..++|||||||||||++|||+|++| ++++|||++|++||+++.. +..+..
T Consensus 182 ~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~------------~~~d~~ 235 (239)
T cd05561 182 GG-------------GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGP------------PGRDPV 235 (239)
T ss_pred CC-------------CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC------------CCcCCC
Confidence 55 799999999999999999999999999 9999999999999998753 345568
Q ss_pred cccc
Q 006930 611 FGAG 614 (625)
Q Consensus 611 ~G~G 614 (625)
||||
T Consensus 236 ~G~G 239 (239)
T cd05561 236 FGYG 239 (239)
T ss_pred cCCC
Confidence 9998
No 11
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-46 Score=385.35 Aligned_cols=291 Identities=39% Similarity=0.524 Sum_probs=218.3
Q ss_pred CCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCC-Ccc
Q 006930 132 GSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGIN-ETV 210 (625)
Q Consensus 132 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 210 (625)
|+||+|+|||+|||++||+|.+... .+.++...++|...... |.+.... ...
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~---------------------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 53 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF---------------------PNDKVKGGYDFVDDDYD------PMDTRPYPSPL 53 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC---------------------CCCceeeeeECccCCCC------ccccccccccc
Confidence 8999999999999999999975321 12344444444331100 0000000 000
Q ss_pred ccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHcCCCEEEe
Q 006930 211 EFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISI 290 (625)
Q Consensus 211 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~~~~VIn~ 290 (625)
......|..+|||||||+|+|...+... +.||||+|+|+.+|+++..+.....+++++|+|+++++++||||
T Consensus 54 ~~~~~~~~~~HGT~vAgiiag~~~n~~~--------~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~ 125 (295)
T cd07474 54 GDASAGDATGHGTHVAGIIAGNGVNVGT--------IKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINL 125 (295)
T ss_pred ccCCCCCCCCcHHHHHHHHhcCCCccCc--------eEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 1123456899999999999998755322 38999999999999998656788889999999999999999999
Q ss_pred ccCCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCCcc--cCCCCceEEeecCCCCCceeeEEEeCCCeeeee
Q 006930 291 SIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSV--TNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSG 368 (625)
Q Consensus 291 S~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~ 368 (625)
|||... . .....+..++.++.++|++||+||||++...... ++..+++|+||++.....
T Consensus 126 S~g~~~---~-~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~--------------- 186 (295)
T cd07474 126 SLGSSV---N-GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV--------------- 186 (295)
T ss_pred CCCCCC---C-CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc---------------
Confidence 999873 2 2456777788889999999999999998765543 567889999998542100
Q ss_pred eecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCc
Q 006930 369 VSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEG 448 (625)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~ 448 (625)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCC-CCCCCCCCCCCCCccccCCCcEEe
Q 006930 449 LVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSA-RGPNGLNPEILKPDLIAPGVNILA 527 (625)
Q Consensus 449 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs-~Gp~~~~~~~~KPdi~APG~~i~s 527 (625)
........|++ .|+... .++||||+|||++|.+
T Consensus 187 --------------------------------------------~~~~~~~~~~s~~~~~~~--~~~kpdv~apG~~i~~ 220 (295)
T cd07474 187 --------------------------------------------AEADTVGPSSSRGPPTSD--SAIKPDIVAPGVDIMS 220 (295)
T ss_pred --------------------------------------------CCCCceeccCCCCCCCCC--CCcCCCEECCcCceEe
Confidence 00112334444 455554 7899999999999999
Q ss_pred eecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCCCccCCCCCCCC
Q 006930 528 AWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNAST 607 (625)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~tA~~~~~~~~~~~~~~~~~~~~ 607 (625)
+...... .|..++|||||||+|||++|||+|++|+|++++||++|++||++....+.. .++
T Consensus 221 ~~~~~~~-----------~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~~--------~~~ 281 (295)
T cd07474 221 TAPGSGT-----------GYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGV--------VYP 281 (295)
T ss_pred eccCCCC-----------ceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCCC--------cCC
Confidence 9877422 789999999999999999999999999999999999999999998654321 124
Q ss_pred CCcccccccCcccc
Q 006930 608 PYDFGAGHVNLDRA 621 (625)
Q Consensus 608 ~~~~G~G~ld~~~A 621 (625)
+..+|||+||+.+|
T Consensus 282 ~~~~G~G~l~~~~A 295 (295)
T cd07474 282 VSRQGAGRVDALRA 295 (295)
T ss_pred hhccCcceeccccC
Confidence 46899999999987
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=7.1e-47 Score=384.85 Aligned_cols=276 Identities=25% Similarity=0.306 Sum_probs=192.2
Q ss_pred CccEEEEcccccCCCCCCCCCCCCCCC-CCCccccccccccccccCCCcceeeeeeecccccccC-CCCCCCCCCCC--C
Q 006930 133 SDVIIGVFDTGIWPERRSFSDLNIGSI-PSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAG-GSAGPIGGGIN--E 208 (625)
Q Consensus 133 ~gv~VaVIDtGid~~Hp~f~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~--~ 208 (625)
|+|+|||||||||++||||.++.+.-. +...++....+.+|-. + +.+++|...++... -..+|.+.... .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~d-----d-~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYID-----D-VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccc-----c-ccCeeccCCcccccccccCcccccccccc
Confidence 689999999999999999986422111 0111121122222211 1 12233332111000 00011111100 0
Q ss_pred ccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHcCCCEE
Q 006930 209 TVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVI 288 (625)
Q Consensus 209 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~~~~VI 288 (625)
..+...+.+..+|||||||||++...++.+ +.||||+++|+.+|++.. +.....++++||+||++++++||
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~~g--------~~GvAp~a~i~~~k~~~~-g~~~~~~i~~Ai~~a~~~g~~Ii 145 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNGIG--------IDGVADNVKIMPLRIVPN-GDERDKDIANAIRYAVDNGAKVI 145 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCCCc--------eEEECCCCEEEEEEEecC-CCcCHHHHHHHHHHHHHCCCcEE
Confidence 112234557899999999999998765433 389999999999999865 55677889999999999999999
Q ss_pred EeccCCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCCc---cc--------CCCCceEEeecCCCCCceeeE
Q 006930 289 SISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMS---VT--------NLAPWIVTVGAGTIDRNFPAE 357 (625)
Q Consensus 289 n~S~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~~~vitVga~~~~~~~~~~ 357 (625)
|||||.. .. .....+..++.++.++|+++|+||||+|.+... ++ ...+++|+||+.....
T Consensus 146 N~S~G~~---~~-~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~----- 216 (291)
T cd07483 146 NMSFGKS---FS-PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY----- 216 (291)
T ss_pred EeCCCCC---CC-CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC-----
Confidence 9999976 22 223456777778899999999999999865321 11 1235677777633211
Q ss_pred EEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEE
Q 006930 358 VRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGM 437 (625)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~ 437 (625)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCc
Q 006930 438 ILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPD 517 (625)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPd 517 (625)
....++.||++|+.. ||
T Consensus 217 --------------------------------------------------------~~~~~~~~Sn~G~~~-------vd 233 (291)
T cd07483 217 --------------------------------------------------------ENNLVANFSNYGKKN-------VD 233 (291)
T ss_pred --------------------------------------------------------CcccccccCCCCCCc-------eE
Confidence 012468899999853 49
Q ss_pred cccCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 006930 518 LIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 588 (625)
Q Consensus 518 i~APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~tA~ 588 (625)
|+|||..|+++.+.+ .|..++|||||||+|||++|||+|++|+|++.|||++|++||.
T Consensus 234 i~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 234 VFAPGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred EEeCCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999999997765 7999999999999999999999999999999999999999984
No 13
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-47 Score=374.96 Aligned_cols=329 Identities=27% Similarity=0.403 Sum_probs=262.3
Q ss_pred CCcceEEEEeCCCCCCCCcchhhhhhhhhcCC------C----------------ceEEEEec---cceeeEEEEeCHHH
Q 006930 33 QTVKTFIFRIDSQSKPSIFPTHYHWYSSEFAS------P----------------VQILHTYD---TVFHGFSATLSPDQ 87 (625)
Q Consensus 33 ~~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~------~----------------~~~~~~~~---~~~~~~~~~~~~~~ 87 (625)
..+.+|||.|++......+..|.+++++.... . ..+...|. .+++++.-.++.+.
T Consensus 78 ~~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~ 157 (501)
T KOG1153|consen 78 ALPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGES 157 (501)
T ss_pred ccccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccce
Confidence 34789999999877766666666665554433 0 11333333 26778888888999
Q ss_pred HHHHhCCCCeeEEEecccccccc-----CCCcccccccccCC------------CccCCCCCCccEEEEcccccCCCCCC
Q 006930 88 AASLSRHPSVLAVIEDQRRQLHT-----TRSPQFLGLRNQQG------------LWSESDYGSDVIIGVFDTGIWPERRS 150 (625)
Q Consensus 88 l~~L~~~p~V~~v~~~~~~~~~~-----~~~~~~~~~~~~~~------------~~~~~~tG~gv~VaVIDtGid~~Hp~ 150 (625)
+..++++|-++.++++..++... .+....|++.++.. +++ -..|+||..+|+||||+..|||
T Consensus 158 v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvtaYv~DTGVni~H~d 236 (501)
T KOG1153|consen 158 VCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTAYVLDTGVNIEHPD 236 (501)
T ss_pred eeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEEEEecccccccccc
Confidence 99999999999999988777644 33444577765521 122 2369999999999999999999
Q ss_pred CCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCCccccCCCCCCCCCccccchhhc
Q 006930 151 FSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFMSPRDADGHGTHTASTAA 230 (625)
Q Consensus 151 f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiia 230 (625)
|.++. .| |..+. +.....|++||||||||+|+
T Consensus 237 FegRa------~w------Ga~i~------------------------------------~~~~~~D~nGHGTH~AG~I~ 268 (501)
T KOG1153|consen 237 FEGRA------IW------GATIP------------------------------------PKDGDEDCNGHGTHVAGLIG 268 (501)
T ss_pred cccce------ec------ccccC------------------------------------CCCcccccCCCcceeeeeee
Confidence 98752 22 11111 01345789999999999999
Q ss_pred cccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHc---------CCCEEEeccCCCCCCCCC
Q 006930 231 GRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVND---------GVDVISISIGGGDGISSP 301 (625)
Q Consensus 231 g~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~---------~~~VIn~S~G~~~g~~~~ 301 (625)
++. .|||.+++|+.+||+++++.++.+++++++||+++. +..|.|||+|+.
T Consensus 269 sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~------ 328 (501)
T KOG1153|consen 269 SKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF------ 328 (501)
T ss_pred ccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc------
Confidence 985 799999999999999999999999999999999986 467999999998
Q ss_pred CCCChHHhhHHHhhhCCcEEEEecCCCCCCCCcc-cCCCCceEEeecCCCCCceeeEEEeCCCeeeeeeecccCCCCCCc
Q 006930 302 YYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSV-TNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEK 380 (625)
Q Consensus 302 ~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~-~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (625)
...++..|+.+|.+.|+.|++||||+..+.|.+ |+.+..+|||||++..
T Consensus 329 -~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~----------------------------- 378 (501)
T KOG1153|consen 329 -RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN----------------------------- 378 (501)
T ss_pred -ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc-----------------------------
Confidence 356688888899999999999999999998855 5788999999996542
Q ss_pred eeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccccCCCccCEEE
Q 006930 381 MYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACA 460 (625)
Q Consensus 381 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~p~~~ 460 (625)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCccccCCCcEEeeecCCCCCCCCCC
Q 006930 461 LGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDS 540 (625)
Q Consensus 461 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~~~~~~~~ 540 (625)
+.++.|||||+|+ ||.|||.+|+|++-++..
T Consensus 379 -----------------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~------ 409 (501)
T KOG1153|consen 379 -----------------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN------ 409 (501)
T ss_pred -----------------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCcc------
Confidence 3789999999999 999999999999988744
Q ss_pred CcccccccccCchhhhHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHhccccccCCC
Q 006930 541 DLRKTEFNILSGTSMACPHVSGAAALLKSAHPD---------WSPAAIRSAMMTTASIVDNSN 594 (625)
Q Consensus 541 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~---------lt~~~vk~~L~~tA~~~~~~~ 594 (625)
.....+|||||+|||||++|.+++..|. .++.++|..++.-..+..-.+
T Consensus 410 -----at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~d~l~~ 467 (501)
T KOG1153|consen 410 -----ATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQDLLFG 467 (501)
T ss_pred -----chheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccccccccC
Confidence 6788999999999999999999999883 489999999888776544333
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.5e-45 Score=371.16 Aligned_cols=247 Identities=33% Similarity=0.419 Sum_probs=195.4
Q ss_pred CCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCCccc
Q 006930 132 GSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVE 211 (625)
Q Consensus 132 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (625)
|+||+|||||+|||++||+|.++-.. |.. ..+ ...+++.+. ...
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~-----~~~--------------~~~------~~~~~~~d~-----------~~~ 44 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRG-----WGG--------------GSA------DHDYNWFDP-----------VGN 44 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcccc-----cCC--------------CCc------ccccccccC-----------CCC
Confidence 89999999999999999999864100 000 000 000110000 011
Q ss_pred cCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHH---------
Q 006930 212 FMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVN--------- 282 (625)
Q Consensus 212 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~--------- 282 (625)
...+.|..+|||||||||+|...+.. ..||||+|+|+.+|+++. ..+...+++++++|++.
T Consensus 45 ~~~~~d~~~HGT~vagii~g~~~~~~---------~~GvAp~a~i~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~ 114 (264)
T cd07481 45 TPLPYDDNGHGTHTMGTMVGNDGDGQ---------QIGVAPGARWIACRALDR-NGGNDADYLRCAQWMLAPTDSAGNPA 114 (264)
T ss_pred CCCCCCCCCchhhhhhheeecCCCCC---------ceEECCCCeEEEEEeecC-CCCcHHHHHHHHHHHHhccccccccc
Confidence 23456788999999999998754321 279999999999999988 44778889999999975
Q ss_pred ---cCCCEEEeccCCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCCc---ccCCCCceEEeecCCCCCceee
Q 006930 283 ---DGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMS---VTNLAPWIVTVGAGTIDRNFPA 356 (625)
Q Consensus 283 ---~~~~VIn~S~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~~~vitVga~~~~~~~~~ 356 (625)
.+++|||||||... . ....+..++..+.++|++||+||||++.+... +++..+++|+||+.+.
T Consensus 115 ~~~~~~~Iin~S~G~~~---~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------ 183 (264)
T cd07481 115 DPDLAPDVINNSWGGPS---G--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------ 183 (264)
T ss_pred ccccCCeEEEeCCCcCC---C--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC------
Confidence 68999999999873 2 34556667778889999999999999876442 5677889999998432
Q ss_pred EEEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceE
Q 006930 357 EVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVG 436 (625)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g 436 (625)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCC
Q 006930 437 MILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKP 516 (625)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 516 (625)
.+.++.||++||... ++.||
T Consensus 184 ----------------------------------------------------------~~~~~~~S~~g~~~~--~~~~~ 203 (264)
T cd07481 184 ----------------------------------------------------------NDVLADFSSRGPSTY--GRIKP 203 (264)
T ss_pred ----------------------------------------------------------CCCCccccCCCCCCC--CCcCc
Confidence 236788999999987 89999
Q ss_pred ccccCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCC--CCHHHHHHHHHhccc
Q 006930 517 DLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPD--WSPAAIRSAMMTTAS 588 (625)
Q Consensus 517 di~APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~--lt~~~vk~~L~~tA~ 588 (625)
||+|||.+|.++.+.+ .|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 204 dv~ApG~~i~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 204 DISAPGVNIRSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred eEEECCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9999999999998775 7899999999999999999999999999 999999999999985
No 15
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.3e-45 Score=368.24 Aligned_cols=246 Identities=32% Similarity=0.391 Sum_probs=193.9
Q ss_pred ccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCCccccC
Q 006930 134 DVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFM 213 (625)
Q Consensus 134 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (625)
||+||||||||+.+||+|..... ..+.++.+.++|... . .
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~--------------------~~~~~i~~~~~~~~~------~--------------~ 40 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL--------------------FKNLRILGEYDFVDN------S--------------N 40 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc--------------------ccCCceeeeecCccC------C--------------C
Confidence 79999999999999999942100 012345555555442 1 1
Q ss_pred C-CCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCC--CChhhHHHHHHHHHHcCCCEEEe
Q 006930 214 S-PRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAG--CFDSDILAAFDAAVNDGVDVISI 290 (625)
Q Consensus 214 ~-~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~--~~~~~i~~ai~~a~~~~~~VIn~ 290 (625)
. ..|..+|||||||||+|...+ .+.||||+|+|+.+|+...... .....++.+++|+.+++++||||
T Consensus 41 ~~~~~~~~HGT~vagiia~~~~~----------~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~ 110 (261)
T cd07493 41 NTNYTDDDHGTAVLSTMAGYTPG----------VMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISS 110 (261)
T ss_pred CCCCCCCCchhhhheeeeeCCCC----------CEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 1 357889999999999997532 2489999999999998754222 34556889999999999999999
Q ss_pred ccCCCCCCCCC---------CCCChHHhhHHHhhhCCcEEEEecCCCCCC---CCcccCCCCceEEeecCCCCCceeeEE
Q 006930 291 SIGGGDGISSP---------YYLDPIAIGSYGAASRGVFVSSSAGNDGPN---GMSVTNLAPWIVTVGAGTIDRNFPAEV 358 (625)
Q Consensus 291 S~G~~~g~~~~---------~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~~~vitVga~~~~~~~~~~~ 358 (625)
|||........ .....+.++++++.++|++||+||||++.. ...+|+..+++|+||+.+.
T Consensus 111 S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~-------- 182 (261)
T cd07493 111 SLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA-------- 182 (261)
T ss_pred CCCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc--------
Confidence 99987310000 012346677788899999999999999987 3566778899999998321
Q ss_pred EeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEE
Q 006930 359 RLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMI 438 (625)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~ 438 (625)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCcc
Q 006930 439 LANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDL 518 (625)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi 518 (625)
.+.++.||++||+.+ ++.||||
T Consensus 183 --------------------------------------------------------~~~~~~~S~~G~~~~--~~~~pdi 204 (261)
T cd07493 183 --------------------------------------------------------NGNKASFSSIGPTAD--GRLKPDV 204 (261)
T ss_pred --------------------------------------------------------CCCCCccCCcCCCCC--CCcCCce
Confidence 125788999999987 8999999
Q ss_pred ccCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 006930 519 IAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 588 (625)
Q Consensus 519 ~APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~tA~ 588 (625)
+|||.++++..... .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 205 ~a~G~~~~~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 205 MALGTGIYVINGDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EecCCCeEEEcCCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999855443 7899999999999999999999999999999999999999985
No 16
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=4.5e-45 Score=369.58 Aligned_cols=264 Identities=29% Similarity=0.316 Sum_probs=203.1
Q ss_pred CCccCCCCCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCC
Q 006930 124 GLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIG 203 (625)
Q Consensus 124 ~~~~~~~tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 203 (625)
.+|..+++|+||+|+|||||||++||+|.++... .+...+...++....
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-------------------------~~~~~~~~~~~~~~~------ 49 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-------------------------DGYDPAVNGYNFVPN------ 49 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC-------------------------CCcccccCCcccccc------
Confidence 3799999999999999999999999999864110 000011111111000
Q ss_pred CCCCCccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHc
Q 006930 204 GGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVND 283 (625)
Q Consensus 204 ~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~ 283 (625)
.........|..+|||||||||++..++.....|++ .+.|+||+++|+.+|+++.........++++|+|+++.
T Consensus 50 ----~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~ 123 (273)
T cd07485 50 ----VGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADN 123 (273)
T ss_pred ----cCCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHc
Confidence 000113445678999999999999865543322221 23579999999999999986667788899999999999
Q ss_pred CCCEEEeccCCCCCCCCCCCCChHHhhHHHhhhC-------CcEEEEecCCCCCCCCcccCCCCceEEeecCCCCCceee
Q 006930 284 GVDVISISIGGGDGISSPYYLDPIAIGSYGAASR-------GVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPA 356 (625)
Q Consensus 284 ~~~VIn~S~G~~~g~~~~~~~~~~~~~~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~~~vitVga~~~~~~~~~ 356 (625)
+++|||||||.. ....+...+..++..+.++ |++||+||||++.....+++..+++|+|++.+.
T Consensus 124 g~~Vin~S~g~~---~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~------ 194 (273)
T cd07485 124 GAVILQNSWGGT---GGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT------ 194 (273)
T ss_pred CCcEEEecCCCC---CccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC------
Confidence 999999999987 3334556677777788777 999999999999887777888899999998432
Q ss_pred EEEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceE
Q 006930 357 EVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVG 436 (625)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g 436 (625)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCC
Q 006930 437 MILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKP 516 (625)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 516 (625)
.+.++.||++|+..
T Consensus 195 ----------------------------------------------------------~~~~~~~S~~g~~~-------- 208 (273)
T cd07485 195 ----------------------------------------------------------NDNKASFSNYGRWV-------- 208 (273)
T ss_pred ----------------------------------------------------------CCCcCccccCCCce--------
Confidence 13567899999987
Q ss_pred ccccCCC-cEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 006930 517 DLIAPGV-NILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPD-WSPAAIRSAMMTT 586 (625)
Q Consensus 517 di~APG~-~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~-lt~~~vk~~L~~t 586 (625)
||+|||. .++++.+.... .....|..++|||||||+|||++|||+|++|+ ++++|||++|++|
T Consensus 209 ~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 209 DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999 88888664311 11237899999999999999999999999999 9999999999986
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-44 Score=366.03 Aligned_cols=258 Identities=34% Similarity=0.467 Sum_probs=205.2
Q ss_pred CCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCCccc
Q 006930 132 GSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVE 211 (625)
Q Consensus 132 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (625)
|+||+|+|||+||+++||+|.+.... ...+... ...
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~-----------------~~~ 36 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNT-----------------VNG 36 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------ccccccc-----------------ccC
Confidence 89999999999999999999864211 0000000 011
Q ss_pred cCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHc----CCCE
Q 006930 212 FMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVND----GVDV 287 (625)
Q Consensus 212 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~----~~~V 287 (625)
.....|..+|||||||||+|...+. .+.+.||||+|+|+.+|+++..+.....+++++|+|+++. +++|
T Consensus 37 ~~~~~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~I 109 (264)
T cd07487 37 RTTPYDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRV 109 (264)
T ss_pred CCCCCCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceE
Confidence 2345677899999999999987543 1124899999999999999987677888999999999998 9999
Q ss_pred EEeccCCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCC--cccCCCCceEEeecCCCCCceeeEEEeCCCee
Q 006930 288 ISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGM--SVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRR 365 (625)
Q Consensus 288 In~S~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~~~vitVga~~~~~~~~~~~~~~~~~~ 365 (625)
||||||... ........+..++.++.++|++||+||||++.... ..++..+++|+||+...+..
T Consensus 110 in~S~g~~~--~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------ 175 (264)
T cd07487 110 VNLSLGAPP--DPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------ 175 (264)
T ss_pred EEeccCCCC--CCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------
Confidence 999999884 22445677888888999999999999999998765 56678899999998544221
Q ss_pred eeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCC
Q 006930 366 LSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (625)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~ 445 (625)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCccccCCCcE
Q 006930 446 GEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNI 525 (625)
Q Consensus 446 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~i 525 (625)
....++.||++||+.+ ++.||||+|||++|
T Consensus 176 ------------------------------------------------~~~~~~~~s~~G~~~~--~~~~~di~apG~~i 205 (264)
T cd07487 176 ------------------------------------------------HDDGISYFSSRGPTGD--GRIKPDVVAPGENI 205 (264)
T ss_pred ------------------------------------------------CCccccccccCCCCCC--CCcCCCEEccccce
Confidence 0014688999999987 89999999999999
Q ss_pred EeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 006930 526 LAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 588 (625)
Q Consensus 526 ~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~tA~ 588 (625)
.++.+.... ........|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 206 ~~~~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 206 VSCRSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred Eeccccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 998654311 01112237899999999999999999999999999999999999999985
No 18
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=4.1e-44 Score=371.05 Aligned_cols=221 Identities=29% Similarity=0.363 Sum_probs=165.8
Q ss_pred CCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCC--ChhhHHHHHHHHHHcCCCEEEeccC
Q 006930 216 RDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGC--FDSDILAAFDAAVNDGVDVISISIG 293 (625)
Q Consensus 216 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~--~~~~i~~ai~~a~~~~~~VIn~S~G 293 (625)
.|+.+|||||||||||+..++.. +.||||+|+|+.+|+++...+. ...++++||+++++.+++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~~~--------~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEEPE--------RNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCc--------eEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 46789999999999998644322 4899999999999998763222 2356899999999999999999999
Q ss_pred CCCCCCCCCCCChHHhhHHH-hhhCCcEEEEecCCCCCCCCcc--cC-CCCceEEeecCCCCCceeeEEEeCCCeeeeee
Q 006930 294 GGDGISSPYYLDPIAIGSYG-AASRGVFVSSSAGNDGPNGMSV--TN-LAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGV 369 (625)
Q Consensus 294 ~~~g~~~~~~~~~~~~~~~~-a~~~Gi~vV~AAGN~g~~~~~~--~~-~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~ 369 (625)
... .......+.+.+.+ +.++|++||+||||+|+..++. |+ ..+++|+|||..........
T Consensus 254 ~~~---~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------ 318 (412)
T cd04857 254 EAT---HWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------ 318 (412)
T ss_pred cCC---CCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc------------
Confidence 873 21112223333333 4578999999999999876654 33 46899999995322110000
Q ss_pred ecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCcc
Q 006930 370 SLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGL 449 (625)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~ 449 (625)
|.
T Consensus 319 ----------------y~-------------------------------------------------------------- 320 (412)
T cd04857 319 ----------------YS-------------------------------------------------------------- 320 (412)
T ss_pred ----------------cc--------------------------------------------------------------
Confidence 00
Q ss_pred ccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCccccCCCcEEeee
Q 006930 450 VGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAW 529 (625)
Q Consensus 450 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~i~s~~ 529 (625)
......+.++.||||||+.+ +++||||+|||+.|.+..
T Consensus 321 ----------------------------------------~~~~~~~~~~~fSSrGP~~d--G~~~pdI~APG~~I~s~p 358 (412)
T cd04857 321 ----------------------------------------LREKLPGNQYTWSSRGPTAD--GALGVSISAPGGAIASVP 358 (412)
T ss_pred ----------------------------------------cccccCCccccccccCCccc--CCcCceEEeCCCcEEEcc
Confidence 00011246899999999998 999999999999998863
Q ss_pred cCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHh----CCCCCHHHHHHHHHhccccc
Q 006930 530 TEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSA----HPDWSPAAIRSAMMTTASIV 590 (625)
Q Consensus 530 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~lt~~~vk~~L~~tA~~~ 590 (625)
.... ..|..++|||||||||||++|||++. +|+++|.+||++|++||+++
T Consensus 359 ~~~~-----------~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 359 NWTL-----------QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred cCCC-----------CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 2221 26889999999999999999999864 68999999999999999874
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=7.3e-44 Score=357.50 Aligned_cols=233 Identities=39% Similarity=0.505 Sum_probs=196.0
Q ss_pred CccCCCCCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCC
Q 006930 125 LWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGG 204 (625)
Q Consensus 125 ~~~~~~tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 204 (625)
+|..+++|+||+|+|||+||+.+||+|.++ +...+++.. .
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~------~------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVG------G------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCC------C-------
Confidence 677789999999999999999999999743 111122221 1
Q ss_pred CCCCccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHc-
Q 006930 205 GINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVND- 283 (625)
Q Consensus 205 ~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~- 283 (625)
....|..+|||||||||+++. .||||+|+|+.+|+++.++....++++++++|+++.
T Consensus 57 --------~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~ 114 (255)
T cd04077 57 --------DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDA 114 (255)
T ss_pred --------CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcc
Confidence 125678899999999999863 699999999999999986677888999999999987
Q ss_pred ----CCCEEEeccCCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCC-CcccCCCCceEEeecCCCCCceeeEE
Q 006930 284 ----GVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNG-MSVTNLAPWIVTVGAGTIDRNFPAEV 358 (625)
Q Consensus 284 ----~~~VIn~S~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVga~~~~~~~~~~~ 358 (625)
+++|||||||.. . ...+..++.++.++|+++|+||||++.+. ...++..+++|+||+.+.+
T Consensus 115 ~~~~~~~iin~S~g~~---~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------- 180 (255)
T cd04077 115 TKRGKPAVANMSLGGG---A----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------- 180 (255)
T ss_pred cccCCCeEEEeCCCCC---C----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-------
Confidence 489999999987 2 45677778889999999999999999876 4567788999999984331
Q ss_pred EeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEE
Q 006930 359 RLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMI 438 (625)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~ 438 (625)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCcc
Q 006930 439 LANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDL 518 (625)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi 518 (625)
+.+++||++|+.. ||
T Consensus 181 ---------------------------------------------------------~~~~~~S~~g~~~--------~i 195 (255)
T cd04077 181 ---------------------------------------------------------DARASFSNYGSCV--------DI 195 (255)
T ss_pred ---------------------------------------------------------CCccCcccCCCCC--------cE
Confidence 2468899999987 99
Q ss_pred ccCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 006930 519 IAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASI 589 (625)
Q Consensus 519 ~APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~tA~~ 589 (625)
+|||..|.++...... .|..++|||||||+|||++|||+|++|+++++|||++|++||++
T Consensus 196 ~apG~~i~~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 196 FAPGVDILSAWIGSDT-----------ATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred EeCCCCeEecccCCCC-----------cEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 9999999998774322 78999999999999999999999999999999999999999974
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=8.1e-44 Score=358.36 Aligned_cols=242 Identities=34% Similarity=0.441 Sum_probs=203.9
Q ss_pred cCCCccCCCCCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCC
Q 006930 122 QQGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGP 201 (625)
Q Consensus 122 ~~~~~~~~~tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 201 (625)
++.+|+.+ +|+||+|+|||+||+++||+|... ++...+++.. ..
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~------~~--- 61 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVD------ND--- 61 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccC------CC---
Confidence 45688888 899999999999999999998422 2222222222 11
Q ss_pred CCCCCCCccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHH
Q 006930 202 IGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV 281 (625)
Q Consensus 202 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~ 281 (625)
..+.|..+|||||||||++...+... +.|+||+|+|+.+|+++.+......+++++|++++
T Consensus 62 -----------~~~~d~~~HGT~vagii~~~~~~~~~--------~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~ 122 (260)
T cd07484 62 -----------SDAMDDNGHGTHVAGIIAAATNNGTG--------VAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAA 122 (260)
T ss_pred -----------CCCCCCCCcHHHHHHHHhCccCCCCc--------eEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHH
Confidence 23567889999999999987654322 38999999999999998866778889999999999
Q ss_pred HcCCCEEEeccCCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCCcccCCCCceEEeecCCCCCceeeEEEeC
Q 006930 282 NDGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPAEVRLG 361 (625)
Q Consensus 282 ~~~~~VIn~S~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVga~~~~~~~~~~~~~~ 361 (625)
+++++|||||||... ....+.+++..+.++|++||+||||++.....+++..+++|+||+.+.
T Consensus 123 ~~~~~iin~S~g~~~------~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------- 185 (260)
T cd07484 123 DKGAKVINLSLGGGL------GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ----------- 185 (260)
T ss_pred HCCCeEEEecCCCCC------CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC-----------
Confidence 999999999999872 456677778888999999999999999988889999999999998432
Q ss_pred CCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEe
Q 006930 362 DGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILAN 441 (625)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~ 441 (625)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCccccC
Q 006930 442 GISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAP 521 (625)
Q Consensus 442 ~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~AP 521 (625)
.+.++.||++|+.. |++||
T Consensus 186 -----------------------------------------------------~~~~~~~s~~g~~~--------~~~ap 204 (260)
T cd07484 186 -----------------------------------------------------DDKRASFSNYGKWV--------DVSAP 204 (260)
T ss_pred -----------------------------------------------------CCCcCCcCCCCCCc--------eEEeC
Confidence 12567899999876 99999
Q ss_pred CCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccccc
Q 006930 522 GVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIV 590 (625)
Q Consensus 522 G~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~tA~~~ 590 (625)
|+.+.++.+.. .|..++|||||||+|||++||+++++| +++++||++|++||+++
T Consensus 205 G~~i~~~~~~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 205 GGGILSTTPDG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCCcEeecCCC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999987764 789999999999999999999999999 99999999999999875
No 21
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-43 Score=360.08 Aligned_cols=208 Identities=31% Similarity=0.395 Sum_probs=168.7
Q ss_pred CCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHH----------H
Q 006930 213 MSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV----------N 282 (625)
Q Consensus 213 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~----------~ 282 (625)
....+..+|||||||||+|...++.+ +.||||+|+|+.+|+++..+ .+.+++++|++|++ .
T Consensus 65 ~~~~~~~~HGT~vAgiiaa~~~~~~~--------~~GvAp~a~i~~~~v~~~~~-~~~~~i~~a~~~a~~~~~~~~~~~~ 135 (285)
T cd07496 65 SGVSPSSWHGTHVAGTIAAVTNNGVG--------VAGVAWGARILPVRVLGKCG-GTLSDIVDGMRWAAGLPVPGVPVNP 135 (285)
T ss_pred CCCCCCCCCHHHHHHHHhCcCCCCCC--------ceeecCCCeEEEEEEecCCC-CcHHHHHHHHHHHhccCcCCCcccC
Confidence 34566889999999999998764432 27999999999999998844 48889999999998 4
Q ss_pred cCCCEEEeccCCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCC-CcccCCCCceEEeecCCCCCceeeEEEeC
Q 006930 283 DGVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNG-MSVTNLAPWIVTVGAGTIDRNFPAEVRLG 361 (625)
Q Consensus 283 ~~~~VIn~S~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVga~~~~~~~~~~~~~~ 361 (625)
++++|||||||... . ....+..++.++.++|++||+||||++.+. ..+++..+++|+||+.+.
T Consensus 136 ~~~~Iin~S~G~~~---~--~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----------- 199 (285)
T cd07496 136 NPAKVINLSLGGDG---A--CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL----------- 199 (285)
T ss_pred CCCeEEEeCCCCCC---C--CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC-----------
Confidence 57899999999873 1 155677788889999999999999999876 567788899999998432
Q ss_pred CCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEe
Q 006930 362 DGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILAN 441 (625)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~ 441 (625)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCccccC
Q 006930 442 GISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAP 521 (625)
Q Consensus 442 ~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~AP 521 (625)
.+.++.||++|+.. ||+||
T Consensus 200 -----------------------------------------------------~~~~~~~S~~g~~v--------di~ap 218 (285)
T cd07496 200 -----------------------------------------------------RGQRASYSNYGPAV--------DVSAP 218 (285)
T ss_pred -----------------------------------------------------CCCcccccCCCCCC--------CEEeC
Confidence 13578899999987 99999
Q ss_pred CCcEEeeecCCCCCC--CCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 006930 522 GVNILAAWTEAVGPT--GLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTT 586 (625)
Q Consensus 522 G~~i~s~~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~t 586 (625)
|++|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 219 G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 219 GGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999998876532110 00111123478899999999999999999999999999999999999876
No 22
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.5e-44 Score=363.31 Aligned_cols=233 Identities=26% Similarity=0.221 Sum_probs=168.6
Q ss_pred CCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCC----CCChhhHHHHHHHHHHcC---CCE
Q 006930 215 PRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNA----GCFDSDILAAFDAAVNDG---VDV 287 (625)
Q Consensus 215 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~----~~~~~~i~~ai~~a~~~~---~~V 287 (625)
..|..+|||||||||++...+... ..|+||+++|+.+|+++..+ .....+++++|+|+++++ ++|
T Consensus 34 ~~d~~gHGT~vAgiia~~~~~~~~--------~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~V 105 (291)
T cd04847 34 TADDLGHGTAVAGLALYGDLTLPG--------NGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRV 105 (291)
T ss_pred cCCCCCChHHHHHHHHcCcccCCC--------CCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeE
Confidence 568899999999999976543211 37999999999999999853 356678999999999863 489
Q ss_pred EEeccCCCCCCCCCCCCChHHhhHH-HhhhCCcEEEEecCCCCCCCCc------------ccCCCCceEEeecCCCCCce
Q 006930 288 ISISIGGGDGISSPYYLDPIAIGSY-GAASRGVFVSSSAGNDGPNGMS------------VTNLAPWIVTVGAGTIDRNF 354 (625)
Q Consensus 288 In~S~G~~~g~~~~~~~~~~~~~~~-~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~~~vitVga~~~~~~~ 354 (625)
||||||....... .....+..++. .+.++|++||+||||++..... .++.++++|+|||.+.+...
T Consensus 106 iN~SlG~~~~~~~-~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~ 184 (291)
T cd04847 106 FNLSLGSPLPIDD-GRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDI 184 (291)
T ss_pred EEEecCCCCCccC-CCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccC
Confidence 9999999841111 11123444443 3568999999999999987553 24567899999996654321
Q ss_pred eeEEEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCc
Q 006930 355 PAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGG 434 (625)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~ 434 (625)
...- .
T Consensus 185 ~~~s------------~--------------------------------------------------------------- 189 (291)
T cd04847 185 TDRA------------R--------------------------------------------------------------- 189 (291)
T ss_pred CCcc------------c---------------------------------------------------------------
Confidence 0000 0
Q ss_pred eEEEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCC
Q 006930 435 VGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEIL 514 (625)
Q Consensus 435 ~g~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~ 514 (625)
.+.......+.||++||..+ +++
T Consensus 190 -------------------------------------------------------~~~~~~~~~~~fs~~Gp~~~--~~~ 212 (291)
T cd04847 190 -------------------------------------------------------YSAVGPAPAGATTSSGPGSP--GPI 212 (291)
T ss_pred -------------------------------------------------------ccccccccCCCccccCCCCC--CCc
Confidence 00000112345999999997 999
Q ss_pred CCccccCCCcEEeeecCCCCC-----CCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 006930 515 KPDLIAPGVNILAAWTEAVGP-----TGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 588 (625)
Q Consensus 515 KPdi~APG~~i~s~~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~tA~ 588 (625)
||||+|||+++.+........ ...........|..++|||||||+|||++|||+|++|++++++||++|++||+
T Consensus 213 KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 213 KPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999999999998865432100 00001112347999999999999999999999999999999999999999985
No 23
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=3.4e-43 Score=360.46 Aligned_cols=278 Identities=32% Similarity=0.359 Sum_probs=199.8
Q ss_pred CCCCCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCC
Q 006930 128 ESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGIN 207 (625)
Q Consensus 128 ~~~tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (625)
++++|+||+|||||+|||++||+|.+.... +.. ...+++.....+.
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~------------~~~----~~~~~~~~~~~~~------------------ 47 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN------------KTN----LFHRKIVRYDSLS------------------ 47 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC------------cCc----cCcccEEEeeccC------------------
Confidence 588999999999999999999999753210 000 1122333222111
Q ss_pred CccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCC-CCChhhHHHHHHHHHHcCCC
Q 006930 208 ETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNA-GCFDSDILAAFDAAVNDGVD 286 (625)
Q Consensus 208 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~-~~~~~~i~~ai~~a~~~~~~ 286 (625)
....|..+|||||||||+|..++..... .+.||||+|+|+.+|+++..+ .....++.++++++.+.+++
T Consensus 48 -----~~~~d~~~HGT~vAgiia~~~~~~~~~~-----~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (293)
T cd04842 48 -----DTKDDVDGHGTHVAGIIAGKGNDSSSIS-----LYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGAR 117 (293)
T ss_pred -----CCCCCCCCCcchhheeeccCCcCCCccc-----ccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCE
Confidence 1122789999999999999876653211 238999999999999988743 24566788999999999999
Q ss_pred EEEeccCCCCCCCCCCCCChHHhhHHHh-hh-CCcEEEEecCCCCCCCC---cccCCCCceEEeecCCCCCceeeEEEeC
Q 006930 287 VISISIGGGDGISSPYYLDPIAIGSYGA-AS-RGVFVSSSAGNDGPNGM---SVTNLAPWIVTVGAGTIDRNFPAEVRLG 361 (625)
Q Consensus 287 VIn~S~G~~~g~~~~~~~~~~~~~~~~a-~~-~Gi~vV~AAGN~g~~~~---~~~~~~~~vitVga~~~~~~~~~~~~~~ 361 (625)
|||||||... ... ......++.++ .+ +|++||+||||++.... ..++..+++|+||+++........
T Consensus 118 Vin~S~G~~~---~~~-~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~---- 189 (293)
T cd04842 118 ISSNSWGSPV---NNG-YTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGE---- 189 (293)
T ss_pred EEeccCCCCC---ccc-cchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccccc----
Confidence 9999999883 211 22333333333 23 89999999999998765 567888999999996554320000
Q ss_pred CCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEe
Q 006930 362 DGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILAN 441 (625)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~ 441 (625)
.|..
T Consensus 190 -----------------------------------~~~~----------------------------------------- 193 (293)
T cd04842 190 -----------------------------------GGLG----------------------------------------- 193 (293)
T ss_pred -----------------------------------cccc-----------------------------------------
Confidence 0000
Q ss_pred CCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCccccC
Q 006930 442 GISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAP 521 (625)
Q Consensus 442 ~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~AP 521 (625)
.....+.+++||++||+.+ ++.||||+||
T Consensus 194 -------------------------------------------------~~~~~~~~~~~S~~G~~~~--~~~~pdv~Ap 222 (293)
T cd04842 194 -------------------------------------------------QSDNSDTVASFSSRGPTYD--GRIKPDLVAP 222 (293)
T ss_pred -------------------------------------------------ccCCCCccccccCcCCCCC--CCcCCCEECC
Confidence 0012346899999999987 8999999999
Q ss_pred CCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHhccc
Q 006930 522 GVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHP--------DWSPAAIRSAMMTTAS 588 (625)
Q Consensus 522 G~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p--------~lt~~~vk~~L~~tA~ 588 (625)
|+.|+++..... .........|..++|||||||+|||++|||+|++| .+++.++|++|++||+
T Consensus 223 G~~i~~~~~~~~----~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 223 GTGILSARSGGG----GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCeEeccCCCC----CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 999999975531 01111223788999999999999999999999854 5666799999999985
No 24
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7e-43 Score=355.19 Aligned_cols=256 Identities=27% Similarity=0.341 Sum_probs=185.2
Q ss_pred cccCCCccCCCCCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCC
Q 006930 120 RNQQGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSA 199 (625)
Q Consensus 120 ~~~~~~~~~~~tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 199 (625)
.++..+|+.+++|+||+|+||||||+..|| |..+... + +. .+..+
T Consensus 8 l~~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~---------------~~----~~~~~-------- 52 (298)
T cd07494 8 LNATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V---------------RV----VLAPG-------- 52 (298)
T ss_pred cChhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c---------------ee----ecCCC--------
Confidence 345678999999999999999999999888 6542110 0 00 00000
Q ss_pred CCCCCCCCCccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHH
Q 006930 200 GPIGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDA 279 (625)
Q Consensus 200 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~ 279 (625)
......|+.||||||||++ .||||+|+|+.+|++++ ..++++++|+|
T Consensus 53 -----------~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~----~~~~~~~ai~~ 99 (298)
T cd07494 53 -----------ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP----DLVNSVGAFKK 99 (298)
T ss_pred -----------CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC----CcHHHHHHHHH
Confidence 0123567889999999876 59999999999999876 45678999999
Q ss_pred HHHcCCCEEEeccCCCCCCCC-------CCCCChHHhhHHHhhhCCcEEEEecCCCCCCCCcccCCCCceEEeecCCCCC
Q 006930 280 AVNDGVDVISISIGGGDGISS-------PYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDR 352 (625)
Q Consensus 280 a~~~~~~VIn~S~G~~~g~~~-------~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVga~~~~~ 352 (625)
+++++++|||||||....... +.....+..++.++.++|++||+||||++. .+|+..|++|+||++..+.
T Consensus 100 a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~ 176 (298)
T cd07494 100 AISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDE 176 (298)
T ss_pred HHhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccC
Confidence 999999999999998631000 011335777788889999999999999874 5789999999999964432
Q ss_pred ceeeEEEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHc
Q 006930 353 NFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKA 432 (625)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~ 432 (625)
. +.
T Consensus 177 ~---------g~-------------------------------------------------------------------- 179 (298)
T cd07494 177 D---------GA-------------------------------------------------------------------- 179 (298)
T ss_pred C---------Cc--------------------------------------------------------------------
Confidence 1 00
Q ss_pred CceEEEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCccccc-CCCCCCCCCC
Q 006930 433 GGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASF-SARGPNGLNP 511 (625)
Q Consensus 433 g~~g~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f-Ss~Gp~~~~~ 511 (625)
...+.| +++.... .+
T Consensus 180 ---------------------------------------------------------------~~~~~~~~~~~s~~-~~ 195 (298)
T cd07494 180 ---------------------------------------------------------------RRASSYASGFRSKI-YP 195 (298)
T ss_pred ---------------------------------------------------------------ccccccccCccccc-CC
Confidence 000111 1111111 23
Q ss_pred CCCCCcc----------------ccCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCC
Q 006930 512 EILKPDL----------------IAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWS 575 (625)
Q Consensus 512 ~~~KPdi----------------~APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt 575 (625)
++.|||+ +|||..|.++...... .......|..++|||||||||||++|||+|++|.|+
T Consensus 196 g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~ 270 (298)
T cd07494 196 GRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLS 270 (298)
T ss_pred CCccCccccccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCC
Confidence 6778887 4799988765432100 001123799999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccC
Q 006930 576 PAAIRSAMMTTASIVDN 592 (625)
Q Consensus 576 ~~~vk~~L~~tA~~~~~ 592 (625)
++|||++|++||+++..
T Consensus 271 ~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 271 PERARSLLNKTARDVTK 287 (298)
T ss_pred HHHHHHHHHHhCcccCC
Confidence 99999999999998854
No 25
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.1e-43 Score=350.04 Aligned_cols=253 Identities=34% Similarity=0.398 Sum_probs=186.0
Q ss_pred ccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCCccccC
Q 006930 134 DVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFM 213 (625)
Q Consensus 134 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (625)
||+|||||+|||++||+|.+.- ....+|... ...+..
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~---------------------------~~~~~~~~~----------------~~~~~~ 37 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV---------------------------AQWADFDEN----------------RRISAT 37 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc---------------------------CCceeccCC----------------CCCCCC
Confidence 7999999999999999997531 111112110 001123
Q ss_pred CCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHcCCCEEEeccC
Q 006930 214 SPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIG 293 (625)
Q Consensus 214 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~~~~VIn~S~G 293 (625)
...|..+|||||||||+++..+. .+.||||+++|+.+|+++..+ ...++++++|+|+++.+++|||||||
T Consensus 38 ~~~d~~~HGT~vAgiia~~~~~~---------~~~GvAp~a~i~~~~v~~~~~-~~~~~~~~ai~~a~~~~~~Vin~S~g 107 (254)
T cd07490 38 EVFDAGGHGTHVSGTIGGGGAKG---------VYIGVAPEADLLHGKVLDDGG-GSLSQIIAGMEWAVEKDADVVSMSLG 107 (254)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CEEEECCCCEEEEEEEecCCC-CcHHHHHHHHHHHHhCCCCEEEECCC
Confidence 45678899999999999986522 137999999999999998843 78889999999999999999999999
Q ss_pred CCCCCCCCCCCChHHhhHHHhhh-CCcEEEEecCCCCCCCCcccCCCCceEEeecCCCCCceeeEEEeCCCeeeeeeecc
Q 006930 294 GGDGISSPYYLDPIAIGSYGAAS-RGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLY 372 (625)
Q Consensus 294 ~~~g~~~~~~~~~~~~~~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (625)
... .. ...+..+++.+.+ +|++||+||||++.....+++..+++|+||+++.+.......
T Consensus 108 ~~~---~~--~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s-------------- 168 (254)
T cd07490 108 GTY---YS--EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFS-------------- 168 (254)
T ss_pred cCC---CC--CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCcc--------------
Confidence 873 22 4555555555544 699999999999988778888899999999965432100000
Q ss_pred cCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccccC
Q 006930 373 AGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGD 452 (625)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~ 452 (625)
.
T Consensus 169 ---------------~---------------------------------------------------------------- 169 (254)
T cd07490 169 ---------------S---------------------------------------------------------------- 169 (254)
T ss_pred ---------------C----------------------------------------------------------------
Confidence 0
Q ss_pred CCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCccccCCCcEEeeecCC
Q 006930 453 AHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEA 532 (625)
Q Consensus 453 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~i~s~~~~~ 532 (625)
.........+.++... ....|||++|||.+++++....
T Consensus 170 -----------------------------------------~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~ 207 (254)
T cd07490 170 -----------------------------------------FGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA 207 (254)
T ss_pred -----------------------------------------CcccccccccCCCCCc-cCCcCceEEeccCCeEccccCC
Confidence 0001112222333322 1568999999999999865221
Q ss_pred CCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 006930 533 VGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 588 (625)
Q Consensus 533 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~tA~ 588 (625)
. ....|..++|||||||+|||++|||+|++|+++++|||++|++||+
T Consensus 208 ~---------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 208 N---------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred C---------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 1 1227899999999999999999999999999999999999999985
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.3e-43 Score=348.68 Aligned_cols=241 Identities=32% Similarity=0.400 Sum_probs=190.0
Q ss_pred cEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCCccccCC
Q 006930 135 VIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFMS 214 (625)
Q Consensus 135 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (625)
|+|||||+||+++||+|.+.. ++. .+++....+ .+
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~------~~~~~~~~~--------------~~ 35 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLV------PGWNFVSNN--------------DP 35 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------Ccc------CCccccCCC--------------CC
Confidence 789999999999999998520 001 111111111 23
Q ss_pred CCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHcCCCEEEeccCC
Q 006930 215 PRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIGG 294 (625)
Q Consensus 215 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~~~~VIn~S~G~ 294 (625)
..|..+|||||||||+|+..+..+ +.||||+|+|+.+|+++........++.++++|+++.+++|||||||.
T Consensus 36 ~~~~~~HGT~vAgiiag~~~~~~~--------~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~ 107 (242)
T cd07498 36 TSDIDGHGTACAGVAAAVGNNGLG--------VAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGG 107 (242)
T ss_pred CCCCCCCHHHHHHHHHhccCCCce--------eEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCC
Confidence 567889999999999998654322 389999999999999988666778889999999999999999999998
Q ss_pred CCCCCCCCCCChHHhhHHHhhh-CCcEEEEecCCCCCCCCcccCCCCceEEeecCCCCCceeeEEEeCCCeeeeeeeccc
Q 006930 295 GDGISSPYYLDPIAIGSYGAAS-RGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYA 373 (625)
Q Consensus 295 ~~g~~~~~~~~~~~~~~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (625)
.. ........+..++.++.+ +|++||+||||++......++..+++|+||+.+.
T Consensus 108 ~~--~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------------------- 162 (242)
T cd07498 108 SD--STESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS----------------------- 162 (242)
T ss_pred CC--CCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC-----------------------
Confidence 73 222334566667777788 9999999999999887777888999999998432
Q ss_pred CCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccccCC
Q 006930 374 GAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDA 453 (625)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ 453 (625)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCccccCCCcEEeeecCCC
Q 006930 454 HLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAV 533 (625)
Q Consensus 454 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~ 533 (625)
.+.+++||++|+.. |++|||+++.+......
T Consensus 163 -----------------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~ 193 (242)
T cd07498 163 -----------------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRG 193 (242)
T ss_pred -----------------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCcccc
Confidence 12568899999987 99999999988754321
Q ss_pred CCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 006930 534 GPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTT 586 (625)
Q Consensus 534 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~t 586 (625)
.. .......|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 194 ~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 194 SA----GDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred cc----ccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 11 11122378899999999999999999999999999999999999976
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-42 Score=356.37 Aligned_cols=269 Identities=29% Similarity=0.343 Sum_probs=186.1
Q ss_pred cCCCCCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCC
Q 006930 127 SESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGI 206 (625)
Q Consensus 127 ~~~~tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 206 (625)
+.+++|+||+|+|||+|||.+||+|.++.. ...+|.. .
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~------~--------- 39 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVG------G--------- 39 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCC------C---------
Confidence 467899999999999999999999975321 1111111 1
Q ss_pred CCccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHcCCC
Q 006930 207 NETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVD 286 (625)
Q Consensus 207 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~~~~ 286 (625)
....|..+|||||||||+|+..+. ...||||+|+|+.+|++........++++++|+|+++++++
T Consensus 40 ------~~~~d~~gHGT~VAgiiag~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~ 104 (297)
T cd07480 40 ------EDVQDGHGHGTHCAGTIFGRDVPG---------PRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGAD 104 (297)
T ss_pred ------CCCCCCCCcHHHHHHHHhcccCCC---------cccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCC
Confidence 224678899999999999976542 12699999999999999876677788899999999999999
Q ss_pred EEEeccCCCCC------C-CCCCCCChHHhhHHHh---------------hhCCcEEEEecCCCCCCCCccc-----CCC
Q 006930 287 VISISIGGGDG------I-SSPYYLDPIAIGSYGA---------------ASRGVFVSSSAGNDGPNGMSVT-----NLA 339 (625)
Q Consensus 287 VIn~S~G~~~g------~-~~~~~~~~~~~~~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~~ 339 (625)
|||||||.... + ........+......+ .++|++||+||||++....... ...
T Consensus 105 Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~ 184 (297)
T cd07480 105 VISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAAC 184 (297)
T ss_pred EEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCcccc
Confidence 99999998620 0 0001111222222233 6789999999999986533211 111
Q ss_pred CceEEeecCCCCCceeeEEEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCC
Q 006930 340 PWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGS 419 (625)
Q Consensus 340 ~~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~ 419 (625)
+++++|++....
T Consensus 185 ~~~~~V~~V~~~-------------------------------------------------------------------- 196 (297)
T cd07480 185 PSAMGVAAVGAL-------------------------------------------------------------------- 196 (297)
T ss_pred ccccEEEEECCC--------------------------------------------------------------------
Confidence 233333321110
Q ss_pred CchhhHHHHHHHcCceEEEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCccc
Q 006930 420 SPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVA 499 (625)
Q Consensus 420 ~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 499 (625)
+...
T Consensus 197 ----------------------------------------------------------------------------~~~~ 200 (297)
T cd07480 197 ----------------------------------------------------------------------------GRTG 200 (297)
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 1122
Q ss_pred ccCCCCCCCCCCCCCCCccccCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHH
Q 006930 500 SFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAI 579 (625)
Q Consensus 500 ~fSs~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~v 579 (625)
.|+++.+. ...||||+|||.+|+++.+.. .|..++|||||||+|||++||++|++|+++++++
T Consensus 201 ~~~~~~~~----~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~ 263 (297)
T cd07480 201 NFSAVANF----SNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRAL 263 (297)
T ss_pred CccccCCC----CCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHH
Confidence 23333332 345789999999999988765 8999999999999999999999999999999998
Q ss_pred HHHHHhccccccCCCCCCccCCCCCCCCCCcccccccCccc
Q 006930 580 RSAMMTTASIVDNSNQPMTDEATGNASTPYDFGAGHVNLDR 620 (625)
Q Consensus 580 k~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~ld~~~ 620 (625)
+++|++......... . ........+|+|++++.+
T Consensus 264 ~~~l~~~l~~~~~~~-~------~~~~~~~~~g~G~~~~~~ 297 (297)
T cd07480 264 AALLQARLTAARTTQ-F------APGLDLPDRGVGLGLAPA 297 (297)
T ss_pred HHHHHHHHhhcccCC-C------CCCCChhhcCCceeecCC
Confidence 888885433311100 0 111344588999998763
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-42 Score=349.88 Aligned_cols=248 Identities=21% Similarity=0.236 Sum_probs=177.8
Q ss_pred cCCCccCCC-CCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCC
Q 006930 122 QQGLWSESD-YGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAG 200 (625)
Q Consensus 122 ~~~~~~~~~-tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 200 (625)
+.++|+... .|+||+|+|||+|||.+||||.++.... ..
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~------------------------------~~---------- 43 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL------------------------------IS---------- 43 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc------------------------------cC----------
Confidence 346787644 5899999999999999999998542110 00
Q ss_pred CCCCCCCCccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHH
Q 006930 201 PIGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAA 280 (625)
Q Consensus 201 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a 280 (625)
.....|+.+|||||||||+|.. ++ +| +.||||+|+|+.+|+++ .++++++|+||
T Consensus 44 -----------~~~~~d~~gHGT~VAGiIaa~~-n~---~G-----~~GvAp~a~l~~i~v~~------~~~~~~ai~~A 97 (277)
T cd04843 44 -----------GLTDQADSDHGTAVLGIIVAKD-NG---IG-----VTGIAHGAQAAVVSSTR------VSNTADAILDA 97 (277)
T ss_pred -----------CCCCCCCCCCcchhheeeeeec-CC---Cc-----eeeeccCCEEEEEEecC------CCCHHHHHHHH
Confidence 0114578899999999999974 22 22 27999999999999985 34577777777
Q ss_pred HH----cCCCEEEeccCCCCCCCCC---CCCChHHhhHHHhhhCCcEEEEecCCCCCCCCcc------------c-CCCC
Q 006930 281 VN----DGVDVISISIGGGDGISSP---YYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSV------------T-NLAP 340 (625)
Q Consensus 281 ~~----~~~~VIn~S~G~~~g~~~~---~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~------------~-~~~~ 340 (625)
++ .++.+||||||........ .....+..++.++.++|+++|+||||++.+.... + ...+
T Consensus 98 ~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~ 177 (277)
T cd04843 98 ADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDS 177 (277)
T ss_pred HhccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCC
Confidence 77 3466889999987311110 1123445677788899999999999998753211 1 1235
Q ss_pred ceEEeecCCCCCceeeEEEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCC
Q 006930 341 WIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSS 420 (625)
Q Consensus 341 ~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~ 420 (625)
++|+|||++.+.
T Consensus 178 ~vI~VgA~~~~~-------------------------------------------------------------------- 189 (277)
T cd04843 178 GAIMVGAGSSTT-------------------------------------------------------------------- 189 (277)
T ss_pred CeEEEEeccCCC--------------------------------------------------------------------
Confidence 678887743211
Q ss_pred chhhHHHHHHHcCceEEEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccc
Q 006930 421 PRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVAS 500 (625)
Q Consensus 421 ~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 500 (625)
...++.
T Consensus 190 --------------------------------------------------------------------------~~~~~~ 195 (277)
T cd04843 190 --------------------------------------------------------------------------GHTRLA 195 (277)
T ss_pred --------------------------------------------------------------------------CCcccc
Confidence 013789
Q ss_pred cCCCCCCCCCCCCCCCccccCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHH----h-CCCCC
Q 006930 501 FSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKS----A-HPDWS 575 (625)
Q Consensus 501 fSs~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~p~lt 575 (625)
|||+|+.. ||+|||++|+++........ ......+|..++|||||||+|||++|||++ + +|+|+
T Consensus 196 fSn~G~~v--------di~APG~~i~s~~~~~~~~~---~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt 264 (277)
T cd04843 196 FSNYGSRV--------DVYGWGENVTTTGYGDLQDL---GGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLT 264 (277)
T ss_pred ccCCCCcc--------ceEcCCCCeEecCCCCcccc---cCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCC
Confidence 99999987 99999999999987643110 011112457899999999999999999975 3 49999
Q ss_pred HHHHHHHHHhccc
Q 006930 576 PAAIRSAMMTTAS 588 (625)
Q Consensus 576 ~~~vk~~L~~tA~ 588 (625)
++|||++|++|+.
T Consensus 265 ~~~v~~~L~~t~~ 277 (277)
T cd04843 265 PIEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999974
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.6e-42 Score=343.61 Aligned_cols=252 Identities=31% Similarity=0.394 Sum_probs=193.2
Q ss_pred CccEEEEcccccCCCCCCCCCCCCCCC-CCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCCccc
Q 006930 133 SDVIIGVFDTGIWPERRSFSDLNIGSI-PSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVE 211 (625)
Q Consensus 133 ~gv~VaVIDtGid~~Hp~f~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (625)
+||+|+|||||||++||+|.++..... +..+.+....+..+. +-..+|++.. +
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~--------------~ 55 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYV------------DDIYGWNFVN--------------N 55 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcc------------cCCCcccccC--------------C
Confidence 689999999999999999987422110 011111111111110 0011222111 2
Q ss_pred cCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHcCCCEEEec
Q 006930 212 FMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISIS 291 (625)
Q Consensus 212 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~~~~VIn~S 291 (625)
..++.|..+|||||||||+|...+... +.||||+|+|+.+|+++.++..+..+++++|+++++.+++|||+|
T Consensus 56 ~~~~~d~~~HGT~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S 127 (259)
T cd07473 56 DNDPMDDNGHGTHVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNS 127 (259)
T ss_pred CCCCCCCCCcHHHHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeC
Confidence 245678899999999999998755432 379999999999999988666888899999999999999999999
Q ss_pred cCCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCC---CcccC--CCCceEEeecCCCCCceeeEEEeCCCeee
Q 006930 292 IGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNG---MSVTN--LAPWIVTVGAGTIDRNFPAEVRLGDGRRL 366 (625)
Q Consensus 292 ~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~~~vitVga~~~~~~~~~~~~~~~~~~~ 366 (625)
||... ....+..++.++.++|++||+||||++... ..++. ..+++|+||+.+.
T Consensus 128 ~G~~~------~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~---------------- 185 (259)
T cd07473 128 WGGGG------PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS---------------- 185 (259)
T ss_pred CCCCC------CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC----------------
Confidence 99883 256777788889999999999999998763 23443 3578899987432
Q ss_pred eeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCC
Q 006930 367 SGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNG 446 (625)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~ 446 (625)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCccccCCCcEE
Q 006930 447 EGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNIL 526 (625)
Q Consensus 447 ~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~i~ 526 (625)
.+.++.||++|+.. ||++|||.+++
T Consensus 186 ------------------------------------------------~~~~~~~s~~g~~~-------~~~~apG~~~~ 210 (259)
T cd07473 186 ------------------------------------------------NDALASFSNYGKKT-------VDLAAPGVDIL 210 (259)
T ss_pred ------------------------------------------------CCCcCcccCCCCCC-------cEEEeccCCeE
Confidence 13567799999864 59999999999
Q ss_pred eeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 006930 527 AAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 588 (625)
Q Consensus 527 s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~tA~ 588 (625)
+..+.. .|..++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 211 ~~~~~~-------------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 211 STSPGG-------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred eccCCC-------------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 976554 7899999999999999999999999999999999999999985
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.6e-41 Score=335.21 Aligned_cols=227 Identities=35% Similarity=0.490 Sum_probs=188.3
Q ss_pred ccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCCccccC
Q 006930 134 DVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFM 213 (625)
Q Consensus 134 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (625)
||+|+|||+||+.+||+|.++. ....+|... . ..
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~---------------------------~~~~~~~~~------~-------------~~ 34 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNI---------------------------VGGANFTGD------D-------------NN 34 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccc---------------------------cCcccccCC------C-------------CC
Confidence 7999999999999999997531 111112110 0 02
Q ss_pred CCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHcCCCEEEeccC
Q 006930 214 SPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIG 293 (625)
Q Consensus 214 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~~~~VIn~S~G 293 (625)
...|..+|||||||||++...+. .+.|+||+|+|+.+|+++.++.....+++++++|+++++++|||||||
T Consensus 35 ~~~~~~~HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g 105 (229)
T cd07477 35 DYQDGNGHGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLG 105 (229)
T ss_pred CCCCCCCCHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCc
Confidence 45678899999999999976432 238999999999999998866677789999999999999999999999
Q ss_pred CCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCCcc--cCCCCceEEeecCCCCCceeeEEEeCCCeeeeeeec
Q 006930 294 GGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSV--TNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSL 371 (625)
Q Consensus 294 ~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~~~ 371 (625)
... ....+..++.++.++|+++|+||||++...... ++..+++|+||+.+.+
T Consensus 106 ~~~------~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------- 159 (229)
T cd07477 106 GPS------DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN-------------------- 159 (229)
T ss_pred cCC------CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC--------------------
Confidence 872 345566777788999999999999999877664 7888999999984431
Q ss_pred ccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCcccc
Q 006930 372 YAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVG 451 (625)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~ 451 (625)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCccccCCCcEEeeecC
Q 006930 452 DAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTE 531 (625)
Q Consensus 452 ~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~i~s~~~~ 531 (625)
+.+++||++|+.. |++|||+.|+++.+.
T Consensus 160 --------------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~ 187 (229)
T cd07477 160 --------------------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN 187 (229)
T ss_pred --------------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC
Confidence 2567899999976 999999999999876
Q ss_pred CCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 006930 532 AVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTT 586 (625)
Q Consensus 532 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~t 586 (625)
. .|..++|||||||+|||++|||+|++|++++++||++|++|
T Consensus 188 ~-------------~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 188 N-------------DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred C-------------CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 5 78999999999999999999999999999999999999976
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-41 Score=336.58 Aligned_cols=160 Identities=24% Similarity=0.248 Sum_probs=119.3
Q ss_pred CCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCCccc
Q 006930 132 GSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVE 211 (625)
Q Consensus 132 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (625)
+++|+|||||||||.+||+|.++ +...++|....+. + ...
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~--~-----------~~~ 41 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGD--G-----------NKV 41 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCC--c-----------ccC
Confidence 78999999999999999999753 1112222221000 0 000
Q ss_pred cCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCC------CCChhhHHHHHHHHHHcCC
Q 006930 212 FMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNA------GCFDSDILAAFDAAVNDGV 285 (625)
Q Consensus 212 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~------~~~~~~i~~ai~~a~~~~~ 285 (625)
.....|..+|||||||||+ |+||+|+|+.+|+++..+ ..+...+++||+||+++++
T Consensus 42 ~~~~~d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~ga 103 (247)
T cd07491 42 SPYYVSADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKV 103 (247)
T ss_pred CCCCCCCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCC
Confidence 1123568899999999994 899999999999998754 3456789999999999999
Q ss_pred CEEEeccCCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCC-c--ccCCCCceEEeecCC
Q 006930 286 DVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGM-S--VTNLAPWIVTVGAGT 349 (625)
Q Consensus 286 ~VIn~S~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~~~~vitVga~~ 349 (625)
+|||||||.............+..++.+|.++|+++|+||||++.... . .++..+++|+|||.+
T Consensus 104 dIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 104 DIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred cEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 999999998731111122567888888999999999999999998764 3 346678999999854
No 32
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=5.9e-41 Score=344.17 Aligned_cols=211 Identities=32% Similarity=0.359 Sum_probs=156.3
Q ss_pred CCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHcCCCEEEecc
Q 006930 213 MSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISI 292 (625)
Q Consensus 213 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~~~~VIn~S~ 292 (625)
....|..+|||||||+|+|+... .||||+|+|+.+|+++.++.....+++++|+|+++++++||||||
T Consensus 47 ~~~~d~~gHGT~vAgiia~~~~~------------~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~ 114 (294)
T cd07482 47 NDIVDKLGHGTAVAGQIAANGNI------------KGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSL 114 (294)
T ss_pred CcCCCCCCcHhHHHHHHhcCCCC------------ceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 34567899999999999987432 599999999999999885555888999999999999999999999
Q ss_pred CCCCCCCC-----CCCCChHHhhHHHhhhCCcEEEEecCCCCCCCC----------------------cccCCCCceEEe
Q 006930 293 GGGDGISS-----PYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGM----------------------SVTNLAPWIVTV 345 (625)
Q Consensus 293 G~~~g~~~-----~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~----------------------~~~~~~~~vitV 345 (625)
|....... ......+..++.++.++|++||+||||+|.... ..++..+++|+|
T Consensus 115 G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~V 194 (294)
T cd07482 115 GGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITV 194 (294)
T ss_pred ccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEE
Confidence 98631111 111234566667788999999999999996542 122334455555
Q ss_pred ecCCCCCceeeEEEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhH
Q 006930 346 GAGTIDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAK 425 (625)
Q Consensus 346 ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~ 425 (625)
|+++
T Consensus 195 ga~~---------------------------------------------------------------------------- 198 (294)
T cd07482 195 SATD---------------------------------------------------------------------------- 198 (294)
T ss_pred EeeC----------------------------------------------------------------------------
Confidence 5522
Q ss_pred HHHHHHcCceEEEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCC
Q 006930 426 GLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARG 505 (625)
Q Consensus 426 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~G 505 (625)
..+.++.||++|
T Consensus 199 --------------------------------------------------------------------~~~~~~~~S~~g 210 (294)
T cd07482 199 --------------------------------------------------------------------NNGNLSSFSNYG 210 (294)
T ss_pred --------------------------------------------------------------------CCCCcCccccCC
Confidence 223677899998
Q ss_pred CCCCCCCCCCCccccCCCcEEeeecCCCCCC---C------CCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCH
Q 006930 506 PNGLNPEILKPDLIAPGVNILAAWTEAVGPT---G------LDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSP 576 (625)
Q Consensus 506 p~~~~~~~~KPdi~APG~~i~s~~~~~~~~~---~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~ 576 (625)
+.. +|++|||+.+........... . .........|..++|||||||+|||++|||+|++|.+++
T Consensus 211 ~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~ 283 (294)
T cd07482 211 NSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKP 283 (294)
T ss_pred CCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCc
Confidence 765 399999998853322111000 0 001123347889999999999999999999999999999
Q ss_pred -HHHHHHHHhc
Q 006930 577 -AAIRSAMMTT 586 (625)
Q Consensus 577 -~~vk~~L~~t 586 (625)
.|||++|++|
T Consensus 284 ~~~v~~~L~~T 294 (294)
T cd07482 284 PDEAIRILYNT 294 (294)
T ss_pred HHHHHHHHhhC
Confidence 9999999986
No 33
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=5.7e-42 Score=349.58 Aligned_cols=276 Identities=36% Similarity=0.512 Sum_probs=207.7
Q ss_pred EEEEcccccCCCCCCCC-CCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCCccccCC
Q 006930 136 IIGVFDTGIWPERRSFS-DLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFMS 214 (625)
Q Consensus 136 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (625)
+|||||||||++||+|. ++- ...++.+.+.|.... .....
T Consensus 1 ~V~viDtGid~~h~~~~~~~~----------------------~~~~~~~~~~~~~~~-----------------~~~~~ 41 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF----------------------IWSKVPGGYNFVDGN-----------------PNPSP 41 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE----------------------EEEEEEEEEETTTTB-----------------STTTS
T ss_pred CEEEEcCCcCCCChhHccCCc----------------------ccccccceeeccCCC-----------------CCcCc
Confidence 69999999999999997 320 011222333333321 11244
Q ss_pred CCCCCCCccccchhhcccc-CCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHH-HcCCCEEEecc
Q 006930 215 PRDADGHGTHTASTAAGRH-AFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV-NDGVDVISISI 292 (625)
Q Consensus 215 ~~d~~gHGThVAGiiag~~-~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~-~~~~~VIn~S~ 292 (625)
..|..+|||||||||++.. .+.. .+.|+||+|+|+.+|+++..+ ....+++++|++++ +.+++||||||
T Consensus 42 ~~~~~~HGT~va~ii~~~~~~~~~--------~~~Gva~~a~l~~~~i~~~~~-~~~~~~~~ai~~~~~~~~~~Vin~S~ 112 (282)
T PF00082_consen 42 SDDDNGHGTHVAGIIAGNGGNNGP--------GINGVAPNAKLYSYKIFDNSG-GTSSDLIEAIEYAVKNDGVDVINLSF 112 (282)
T ss_dssp SSTSSSHHHHHHHHHHHTTSSSSS--------SETCSSTTSEEEEEECSSTTS-EEHHHHHHHHHHHHHHTTSSEEEECE
T ss_pred cccCCCccchhhhhcccccccccc--------ccccccccccccccccccccc-cccccccchhhhhhhccCCccccccc
Confidence 5678899999999999987 2221 238999999999999987744 77888999999999 88999999999
Q ss_pred CCCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCC---cccCCCCceEEeecCCCCCceeeEEEeCCCeeeeee
Q 006930 293 GGGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGM---SVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGV 369 (625)
Q Consensus 293 G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~ 369 (625)
|...+.........+..+...+.++|+++|+||||++.... ..++..+++|+||+...
T Consensus 113 G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~------------------- 173 (282)
T PF00082_consen 113 GSNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN------------------- 173 (282)
T ss_dssp EBEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET-------------------
T ss_pred cccccccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc-------------------
Confidence 88310011122334555666888999999999999987654 35667788999997332
Q ss_pred ecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCcc
Q 006930 370 SLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGL 449 (625)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~ 449 (625)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCccccCCCcEEeee
Q 006930 450 VGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAW 529 (625)
Q Consensus 450 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~i~s~~ 529 (625)
.+.++.||++|+... .++.||||+|||.++.+..
T Consensus 174 ---------------------------------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~ 207 (282)
T PF00082_consen 174 ---------------------------------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAV 207 (282)
T ss_dssp ---------------------------------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEE
T ss_pred ---------------------------------------------ccccccccccccccc-ccccccccccccccccccc
Confidence 125688999976542 2899999999999998888
Q ss_pred cCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCCCccCCCCCCCCCC
Q 006930 530 TEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTPY 609 (625)
Q Consensus 530 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~tA~~~~~~~~~~~~~~~~~~~~~~ 609 (625)
+.... ..|..++|||||||+|||++|||+|++|++++++||++|++||+++.... ...++.
T Consensus 208 ~~~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~ 268 (282)
T PF00082_consen 208 PGSDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDN 268 (282)
T ss_dssp TTTES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHH
T ss_pred ccccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCC
Confidence 76521 15888999999999999999999999999999999999999999987221 224556
Q ss_pred cccccccCccccCC
Q 006930 610 DFGAGHVNLDRAMD 623 (625)
Q Consensus 610 ~~G~G~ld~~~Al~ 623 (625)
.||||+||+++||+
T Consensus 269 ~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 269 SYGWGLINAEKALN 282 (282)
T ss_dssp HHTTSBE-HHHHHH
T ss_pred CccCChhCHHHHhC
Confidence 89999999999974
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-40 Score=326.29 Aligned_cols=222 Identities=24% Similarity=0.315 Sum_probs=175.1
Q ss_pred ccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCCccccC
Q 006930 134 DVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFM 213 (625)
Q Consensus 134 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (625)
||+|||||||||++||+|.++... .+.+..+ ... ....
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~---------------------------~~~~~~~-~~~--------------~~~~ 38 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD---------------------------GEVTIDL-EII--------------VVSA 38 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc---------------------------ccccccc-ccc--------------cCCC
Confidence 799999999999999999853211 0011000 000 1113
Q ss_pred CCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHcCCCEEEeccC
Q 006930 214 SPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIG 293 (625)
Q Consensus 214 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~~~~VIn~S~G 293 (625)
...|..+|||||||||+ +.+|+++|+.+|+++........++++||+|+++++++|||||||
T Consensus 39 ~~~d~~gHGT~vAgiia------------------~~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G 100 (222)
T cd07492 39 EGGDKDGHGTACAGIIK------------------KYAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLG 100 (222)
T ss_pred CCCCCCCcHHHHHHHHH------------------ccCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCC
Confidence 45678899999999997 446999999999998866678888999999999999999999999
Q ss_pred CCCCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCCcccCCCCceEEeecCCCCCceeeEEEeCCCeeeeeeeccc
Q 006930 294 GGDGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYA 373 (625)
Q Consensus 294 ~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (625)
... . .....+..++.++.++|+++|+||||++.... .|+..+++|+|++...+.
T Consensus 101 ~~~---~-~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~--------------------- 154 (222)
T cd07492 101 GPG---D-RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD--------------------- 154 (222)
T ss_pred CCC---C-CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC---------------------
Confidence 872 2 23456777778888999999999999987543 367788999999743211
Q ss_pred CCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccccCC
Q 006930 374 GAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDA 453 (625)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ 453 (625)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCccccCCCcEEeeecCCC
Q 006930 454 HLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAV 533 (625)
Q Consensus 454 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~ 533 (625)
..+ .+++. ++++|||.+|.++.+.+
T Consensus 155 -------------------------------------------~~~---~~~~~--------~~~~apg~~i~~~~~~~- 179 (222)
T cd07492 155 -------------------------------------------PKS---FWYIY--------VEFSADGVDIIAPAPHG- 179 (222)
T ss_pred -------------------------------------------Ccc---cccCC--------ceEEeCCCCeEeecCCC-
Confidence 111 12333 49999999999998765
Q ss_pred CCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 006930 534 GPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 588 (625)
Q Consensus 534 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~tA~ 588 (625)
.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 180 ------------~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 ------------RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ------------CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999985
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=1.3e-40 Score=341.94 Aligned_cols=254 Identities=22% Similarity=0.183 Sum_probs=180.7
Q ss_pred ccCCCccCCCCCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCC
Q 006930 121 NQQGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAG 200 (625)
Q Consensus 121 ~~~~~~~~~~tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 200 (625)
++..+|+.+++|+||+|+|||||||++||+|.++.... ..++|.. ..
T Consensus 27 ~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~-------------------------~~~~~~~------~~-- 73 (297)
T cd04059 27 NVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPE-------------------------ASYDFND------ND-- 73 (297)
T ss_pred ccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhccccc-------------------------ccccccC------CC--
Confidence 34578999999999999999999999999997542110 1111111 11
Q ss_pred CCCCCCCCccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHH
Q 006930 201 PIGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAA 280 (625)
Q Consensus 201 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a 280 (625)
. .+.....|..+|||||||||+|...+..+ ..||||+|+|+.+|+++.. .....+..++.++
T Consensus 74 ------~--~~~~~~~~~~gHGT~vAgiiag~~~~~~~--------~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~ 135 (297)
T cd04059 74 ------P--DPTPRYDDDNSHGTRCAGEIAAVGNNGIC--------GVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLN 135 (297)
T ss_pred ------C--CCCCccccccccCcceeeEEEeecCCCcc--------cccccccceEeEEEecCCc--cccHHHHHHHhcc
Confidence 0 00001137889999999999998654322 2799999999999999773 3334445555555
Q ss_pred HHcCCCEEEeccCCCCCCC-CCCCCChHHhhHHHhhh-----CCcEEEEecCCCCCCCCc----ccCCCCceEEeecCCC
Q 006930 281 VNDGVDVISISIGGGDGIS-SPYYLDPIAIGSYGAAS-----RGVFVSSSAGNDGPNGMS----VTNLAPWIVTVGAGTI 350 (625)
Q Consensus 281 ~~~~~~VIn~S~G~~~g~~-~~~~~~~~~~~~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~~~vitVga~~~ 350 (625)
.+ .++|||||||...... ..........++.++.+ +|++||+||||+|..... .....+++|+||+++.
T Consensus 136 ~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~ 214 (297)
T cd04059 136 PD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA 214 (297)
T ss_pred cC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC
Confidence 44 4699999999873111 01112233334444433 699999999999973221 2245678999998432
Q ss_pred CCceeeEEEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHH
Q 006930 351 DRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVK 430 (625)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~ 430 (625)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCC
Q 006930 431 KAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLN 510 (625)
Q Consensus 431 ~~g~~g~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 510 (625)
.+.++.||++|+..
T Consensus 215 ----------------------------------------------------------------~g~~~~~s~~g~~~-- 228 (297)
T cd04059 215 ----------------------------------------------------------------NGVRASYSEVGSSV-- 228 (297)
T ss_pred ----------------------------------------------------------------CCCCcCCCCCCCcE--
Confidence 23568899999987
Q ss_pred CCCCCCccccCCCc-------EEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 006930 511 PEILKPDLIAPGVN-------ILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAM 583 (625)
Q Consensus 511 ~~~~KPdi~APG~~-------i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L 583 (625)
+++|||+. |+++..... ...|..++|||||||+|||++|||+|++|+|++.|||++|
T Consensus 229 ------~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L 292 (297)
T cd04059 229 ------LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHIL 292 (297)
T ss_pred ------EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHH
Confidence 89999987 666655420 1267899999999999999999999999999999999999
Q ss_pred Hhccc
Q 006930 584 MTTAS 588 (625)
Q Consensus 584 ~~tA~ 588 (625)
++||+
T Consensus 293 ~~TA~ 297 (297)
T cd04059 293 ALTAR 297 (297)
T ss_pred HHhcC
Confidence 99985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=2.6e-39 Score=327.27 Aligned_cols=246 Identities=32% Similarity=0.399 Sum_probs=186.6
Q ss_pred CCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCCcc
Q 006930 131 YGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETV 210 (625)
Q Consensus 131 tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (625)
||+||+|+|||+||+.+||+|.+...... .+....+ .
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------------------------~~~~~~~----------------~ 37 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------------------------YYVAVND----------------A 37 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------------------------ccccccc----------------c
Confidence 69999999999999999999986421110 0000000 0
Q ss_pred ccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCC-CCChhhHHHHHHHHHHcCCCEEE
Q 006930 211 EFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNA-GCFDSDILAAFDAAVNDGVDVIS 289 (625)
Q Consensus 211 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~-~~~~~~i~~ai~~a~~~~~~VIn 289 (625)
......|..+|||||||||+|+..+ ..+.|+||+|+|+.+|+++..+ ......+.++++++.+.+++|||
T Consensus 38 ~~~~~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin 108 (267)
T cd04848 38 GYASNGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIIN 108 (267)
T ss_pred cCCCCCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEE
Confidence 0123456889999999999998654 1238999999999999998854 46667788999999999999999
Q ss_pred eccCCCCCCCC---------CCCCChHHhhHHHhhhCCcEEEEecCCCCCCCCcc---------cCCCCceEEeecCCCC
Q 006930 290 ISIGGGDGISS---------PYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSV---------TNLAPWIVTVGAGTID 351 (625)
Q Consensus 290 ~S~G~~~g~~~---------~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~~~vitVga~~~~ 351 (625)
||||....... ......+......+.++|++||+||||++...... +...+++|+||+.+.+
T Consensus 109 ~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~ 188 (267)
T cd04848 109 NSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN 188 (267)
T ss_pred ccCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC
Confidence 99998841110 01345566677788899999999999998654332 2345788999885432
Q ss_pred CceeeEEEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHH
Q 006930 352 RNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKK 431 (625)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~ 431 (625)
.
T Consensus 189 ~------------------------------------------------------------------------------- 189 (267)
T cd04848 189 G------------------------------------------------------------------------------- 189 (267)
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred cCceEEEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccc--cCCCCCCCC
Q 006930 432 AGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVAS--FSARGPNGL 509 (625)
Q Consensus 432 ~g~~g~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~--fSs~Gp~~~ 509 (625)
.... ||++|...+
T Consensus 190 -----------------------------------------------------------------~~~~~~~s~~~~~~~ 204 (267)
T cd04848 190 -----------------------------------------------------------------TIASYSYSNRCGVAA 204 (267)
T ss_pred -----------------------------------------------------------------Ccccccccccchhhh
Confidence 2233 488887542
Q ss_pred CCCCCCCccccCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 006930 510 NPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTAS 588 (625)
Q Consensus 510 ~~~~~KPdi~APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~tA~ 588 (625)
.++++|||.+|.++.+.... .|..++|||||||+|||++||++|++|+|+++|||++|++||+
T Consensus 205 -----~~~~~apG~~i~~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 205 -----NWCLAAPGENIYSTDPDGGN-----------GYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred -----hheeecCcCceeecccCCCC-----------cccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 34799999999999874211 7899999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-40 Score=333.58 Aligned_cols=352 Identities=26% Similarity=0.384 Sum_probs=265.1
Q ss_pred CCcceEEEEeCCCCCCCCcchhhhhhhhhcCC----C------ceEEEEeccceeeEEEEeC-----HHHHHHHhCCCCe
Q 006930 33 QTVKTFIFRIDSQSKPSIFPTHYHWYSSEFAS----P------VQILHTYDTVFHGFSATLS-----PDQAASLSRHPSV 97 (625)
Q Consensus 33 ~~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~-----~~~l~~L~~~p~V 97 (625)
..+.+|||.|+....+ ..+...++++++. + ...-..|...|.-+-++-. .-+|++|..+|.|
T Consensus 47 vve~EyIv~F~~y~~A---k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~v 123 (1033)
T KOG4266|consen 47 VVESEYIVRFKQYKPA---KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDV 123 (1033)
T ss_pred eecceeEEEecccccc---hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCc
Confidence 3477899999987653 3456667777764 1 2223455555655555433 2358999999999
Q ss_pred eEEEeccccccccCC------------Cccc------------------cc------------ccccCCCccCCCCCCcc
Q 006930 98 LAVIEDQRRQLHTTR------------SPQF------------------LG------------LRNQQGLWSESDYGSDV 135 (625)
Q Consensus 98 ~~v~~~~~~~~~~~~------------~~~~------------------~~------------~~~~~~~~~~~~tG~gv 135 (625)
+.+.|.+.+...... ...+ |+ +-.++-+|..|+||++|
T Consensus 124 k~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~V 203 (1033)
T KOG4266|consen 124 KVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKV 203 (1033)
T ss_pred eeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCce
Confidence 999998776541100 0000 00 00113489999999999
Q ss_pred EEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCCccccCCC
Q 006930 136 IIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFMSP 215 (625)
Q Consensus 136 ~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (625)
+|||.|||+..+||.|+.- .....+.+ ....
T Consensus 204 kvAiFDTGl~~~HPHFrnv----------------------------KERTNWTN---------------------E~tL 234 (1033)
T KOG4266|consen 204 KVAIFDTGLRADHPHFRNV----------------------------KERTNWTN---------------------EDTL 234 (1033)
T ss_pred EEEEeecccccCCccccch----------------------------hhhcCCcC---------------------cccc
Confidence 9999999999999999741 00000111 1345
Q ss_pred CCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHcCCCEEEeccCCC
Q 006930 216 RDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGVDVISISIGGG 295 (625)
Q Consensus 216 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~~~~VIn~S~G~~ 295 (625)
.|..||||.|||+|||... ..|.||+++|+.+|||.+....+++++++|+.||+....+|+|+|.|++
T Consensus 235 dD~lgHGTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP 302 (1033)
T KOG4266|consen 235 DDNLGHGTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP 302 (1033)
T ss_pred ccCcccceeEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc
Confidence 6789999999999998752 2699999999999999997778999999999999999999999999998
Q ss_pred CCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCCcccCCCC--ceEEeecCCCCCceeeEEEeCCCeeeeeeeccc
Q 006930 296 DGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTNLAP--WIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLYA 373 (625)
Q Consensus 296 ~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~--~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (625)
. +.+.++-+-+.++..+++++|.|+||+|+-..+..+++. .||.||..
T Consensus 303 D-----fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI------------------------- 352 (1033)
T KOG4266|consen 303 D-----FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI------------------------- 352 (1033)
T ss_pred c-----cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc-------------------------
Confidence 4 567777777788999999999999999988776655443 45555542
Q ss_pred CCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccccCC
Q 006930 374 GAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDA 453 (625)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ 453 (625)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCC----CCCCCCCccccCCCcEEeee
Q 006930 454 HLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGL----NPEILKPDLIAPGVNILAAW 529 (625)
Q Consensus 454 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPdi~APG~~i~s~~ 529 (625)
+.++.++.|||||-+.. ..||.||||++-|.+|....
T Consensus 353 ---------------------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~ 393 (1033)
T KOG4266|consen 353 ---------------------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSK 393 (1033)
T ss_pred ---------------------------------------cccchhhhhccCCcceeecCCcccccCCceEeeccccccCc
Confidence 12347899999996542 24999999999999998776
Q ss_pred cCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHh----CCCCCHHHHHHHHHhccccccCCCCCCccCCCCCC
Q 006930 530 TEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSA----HPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNA 605 (625)
Q Consensus 530 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~lt~~~vk~~L~~tA~~~~~~~~~~~~~~~~~~ 605 (625)
-.. +....+|||.|+|.|||+++|+.+. .--++|+.+|+.|+..|.+++..
T Consensus 394 v~~-------------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~------------ 448 (1033)
T KOG4266|consen 394 VST-------------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP------------ 448 (1033)
T ss_pred ccc-------------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC------------
Confidence 555 6788999999999999999999872 23469999999999999999742
Q ss_pred CCCCcccccccCccccCC
Q 006930 606 STPYDFGAGHVNLDRAMD 623 (625)
Q Consensus 606 ~~~~~~G~G~ld~~~Al~ 623 (625)
.-++||+|++|+.++.+
T Consensus 449 -NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 449 -NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred -chhhccCcchhHHHHHH
Confidence 23589999999987653
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.3e-34 Score=282.50 Aligned_cols=193 Identities=24% Similarity=0.238 Sum_probs=141.5
Q ss_pred CCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHH--HHcCCCEEEecc
Q 006930 215 PRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAA--VNDGVDVISISI 292 (625)
Q Consensus 215 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a--~~~~~~VIn~S~ 292 (625)
..|+++|||||||||||. .|++|+++|+..++... ..+.+..+++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~----~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK----SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC----CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 457899999999999997 46789999997665322 334566778888 567999999999
Q ss_pred CCCCCCCCC-----CCCChHHhhHHHhhhC-CcEEEEecCCCCCCC-----CcccCCCCceEEeecCCCCCceeeEEEeC
Q 006930 293 GGGDGISSP-----YYLDPIAIGSYGAASR-GVFVSSSAGNDGPNG-----MSVTNLAPWIVTVGAGTIDRNFPAEVRLG 361 (625)
Q Consensus 293 G~~~g~~~~-----~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~~~vitVga~~~~~~~~~~~~~~ 361 (625)
|... ... .....+..++.++.++ |+++|+||||+|.+. ...+..++++|+||+.+.....
T Consensus 94 G~~~--~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~------- 164 (247)
T cd07488 94 GEGL--KRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR------- 164 (247)
T ss_pred ccCC--CCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc-------
Confidence 9873 111 1223455666666655 999999999999853 2345667899999985432210
Q ss_pred CCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEe
Q 006930 362 DGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILAN 441 (625)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~ 441 (625)
T Consensus 165 -------------------------------------------------------------------------------- 164 (247)
T cd07488 165 -------------------------------------------------------------------------------- 164 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCC--CCCCCCCCCCCCccc
Q 006930 442 GISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSAR--GPNGLNPEILKPDLI 519 (625)
Q Consensus 442 ~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~--Gp~~~~~~~~KPdi~ 519 (625)
-..+.||++ +|+.+ ++.||||+
T Consensus 165 ------------------------------------------------------~~~s~~sn~~~~~~~~--~~~~~di~ 188 (247)
T cd07488 165 ------------------------------------------------------FFASDVSNAGSEINSY--GRRKVLIV 188 (247)
T ss_pred ------------------------------------------------------ceecccccccCCCCCC--CCceeEEE
Confidence 023455664 44443 78999999
Q ss_pred cCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHhc
Q 006930 520 APGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAA------IRSAMMTT 586 (625)
Q Consensus 520 APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~------vk~~L~~t 586 (625)
|||++|++ +.+ .|..++|||||||||||++|||++++|++.+.+ +|.+|.+|
T Consensus 189 APG~~i~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 189 APGSNYNL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred EeeeeEEC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 99999998 332 688899999999999999999999999887544 55555544
No 39
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=100.00 E-value=5.7e-32 Score=268.51 Aligned_cols=197 Identities=41% Similarity=0.571 Sum_probs=159.9
Q ss_pred CCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHH-HcCCCEEEecc
Q 006930 214 SPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAV-NDGVDVISISI 292 (625)
Q Consensus 214 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~-~~~~~VIn~S~ 292 (625)
...+..+||||||++|++...+... .|+||+++|+.+|+...........+++++++++ .++++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~~---------~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGGG---------VGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCCC---------EEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 4456889999999999998654321 6999999999999998855567788999999999 89999999999
Q ss_pred CCCCCCCCCCCCChHHhhHHHhhhC-CcEEEEecCCCCCCCC---cccCCCCceEEeecCCCCCceeeEEEeCCCeeeee
Q 006930 293 GGGDGISSPYYLDPIAIGSYGAASR-GVFVSSSAGNDGPNGM---SVTNLAPWIVTVGAGTIDRNFPAEVRLGDGRRLSG 368 (625)
Q Consensus 293 G~~~g~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~~~vitVga~~~~~~~~~~~~~~~~~~~~~ 368 (625)
|... .. ....+...+.++.++ |+++|+||||.+.... ..++..+++|+||+.+.+.
T Consensus 110 g~~~---~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------- 169 (241)
T cd00306 110 GGPG---SP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------- 169 (241)
T ss_pred CCCC---CC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------
Confidence 9983 22 355667777777777 9999999999998876 4778889999999854422
Q ss_pred eecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCc
Q 006930 369 VSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEG 448 (625)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~ 448 (625)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCccc-ccCCCCCCCCCCCCCCCccccCCCcEEe
Q 006930 449 LVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVA-SFSARGPNGLNPEILKPDLIAPGVNILA 527 (625)
Q Consensus 449 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~~~~KPdi~APG~~i~s 527 (625)
... .++++|+ |||+.|||..+.+
T Consensus 170 ------------------------------------------------~~~~~~~~~~~--------~~~~~apg~~~~~ 193 (241)
T cd00306 170 ------------------------------------------------TPASPSSNGGA--------GVDIAAPGGDILS 193 (241)
T ss_pred ------------------------------------------------CccCCcCCCCC--------CceEEeCcCCccC
Confidence 112 4555554 4599999999987
Q ss_pred eecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 006930 528 AWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTT 586 (625)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~t 586 (625)
..... ...+..++|||||||+|||++||++|++|++++.++|++|+.|
T Consensus 194 ~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 194 SPTTG-----------GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred cccCC-----------CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 51111 1278999999999999999999999999999999999999875
No 40
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.6e-32 Score=288.74 Aligned_cols=239 Identities=28% Similarity=0.339 Sum_probs=183.7
Q ss_pred CCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCC--CChhhHHHHHHHHHHcCCCEEEeccCCC
Q 006930 218 ADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAG--CFDSDILAAFDAAVNDGVDVISISIGGG 295 (625)
Q Consensus 218 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~--~~~~~i~~ai~~a~~~~~~VIn~S~G~~ 295 (625)
..-||||||||++|+...... ..||||+|+|+++++.+..-+ .+...+.+|+..++++++||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 456999999999999765433 379999999999999877433 3455688999999999999999999988
Q ss_pred CCCCCCCCCChHHhhHHHhhhCCcEEEEecCCCCCCCCcccC---CCCceEEeecCCCCCceeeEEEeCCCeeeeeeecc
Q 006930 296 DGISSPYYLDPIAIGSYGAASRGVFVSSSAGNDGPNGMSVTN---LAPWIVTVGAGTIDRNFPAEVRLGDGRRLSGVSLY 372 (625)
Q Consensus 296 ~g~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~~~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (625)
. ..+.....++...+...++|+++|.||||.|+...+..+ ...++|.|||--....
T Consensus 381 a--~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~m------------------- 439 (1304)
T KOG1114|consen 381 A--HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGM------------------- 439 (1304)
T ss_pred C--CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHH-------------------
Confidence 6 444455556665556678999999999999998776653 3458888888211100
Q ss_pred cCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccccC
Q 006930 373 AGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGD 452 (625)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~ 452 (625)
T Consensus 440 -------------------------------------------------------------------------------- 439 (1304)
T KOG1114|consen 440 -------------------------------------------------------------------------------- 439 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCCCCCCCCccccCCCcEEeeecCC
Q 006930 453 AHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEA 532 (625)
Q Consensus 453 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~i~s~~~~~ 532 (625)
.....+. -..-......||||||+.| |.+-..|+|||+.|.+--.-.
T Consensus 440 -------------m~a~y~~------------------~e~vp~~~YtWsSRgP~~D--G~lGVsi~APggAiAsVP~~t 486 (1304)
T KOG1114|consen 440 -------------MQAEYSV------------------REPVPSNPYTWSSRGPCLD--GDLGVSISAPGGAIASVPQYT 486 (1304)
T ss_pred -------------HHhhhhh------------------hccCCCCccccccCCCCcC--CCcceEEecCCccccCCchhh
Confidence 0000000 0011235788999999998 999999999999997754322
Q ss_pred CCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHh----CCCCCHHHHHHHHHhccccccCCCCCCccCCCCCCCCC
Q 006930 533 VGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSA----HPDWSPAAIRSAMMTTASIVDNSNQPMTDEATGNASTP 608 (625)
Q Consensus 533 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~lt~~~vk~~L~~tA~~~~~~~~~~~~~~~~~~~~~ 608 (625)
.. .-..|+|||||+|+++|.+|||++. +-.+||..||..|++||.++... ..
T Consensus 487 lq-----------~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------------d~ 542 (1304)
T KOG1114|consen 487 LQ-----------NSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------------DS 542 (1304)
T ss_pred hh-----------hhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-------------ch
Confidence 11 4568999999999999999999874 57789999999999999998642 34
Q ss_pred CcccccccCccccC
Q 006930 609 YDFGAGHVNLDRAM 622 (625)
Q Consensus 609 ~~~G~G~ld~~~Al 622 (625)
+.+|.|++++.+|.
T Consensus 543 faqG~GmlqVdkAy 556 (1304)
T KOG1114|consen 543 FAQGQGMLQVDKAY 556 (1304)
T ss_pred hccCcceeehhHHH
Confidence 68999999999885
No 41
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.3e-27 Score=230.39 Aligned_cols=262 Identities=15% Similarity=0.142 Sum_probs=150.3
Q ss_pred HHHHHHhhhhhhhhcccCCCCcceEEEEeCCCCCCCCcchh---hhhhhhhcCCCceEEEEeccceeeEEE---EeCHHH
Q 006930 14 LFFLLLSGSFLQTRTLSTDQTVKTFIFRIDSQSKPSIFPTH---YHWYSSEFASPVQILHTYDTVFHGFSA---TLSPDQ 87 (625)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~yiV~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 87 (625)
+..++++++....+....+.-.+.|+|.|+++...+..... .-+......-... ..|+-.-+++.- +-+...
T Consensus 10 ~a~fl~lf~~~~gag~~~~vftnhflv~l~~g~g~~~ah~va~~hgf~nrg~~~a~d--~eyhf~h~~l~har~rrsl~h 87 (629)
T KOG3526|consen 10 IAVFLSLFCVMIGAGEAVDVFTNHFLVHLKEGGGLEDAHRVAKRHGFINRGQVAASD--NEYHFVHPALVHARTRRSLGH 87 (629)
T ss_pred HHHHHHHHHHHhccccCcceeeeeEEEEEeccCChHHHHHHHHHhCccccccccccC--ceeeeeccccchhhhhcccch
Confidence 33333444444444555555688999999998664421111 1111100000111 223211122221 222345
Q ss_pred HHHHhCCCCeeEEEecccccccc-----------CC----Cccccccc-------------ccCCCccCCCCCCccEEEE
Q 006930 88 AASLSRHPSVLAVIEDQRRQLHT-----------TR----SPQFLGLR-------------NQQGLWSESDYGSDVIIGV 139 (625)
Q Consensus 88 l~~L~~~p~V~~v~~~~~~~~~~-----------~~----~~~~~~~~-------------~~~~~~~~~~tG~gv~VaV 139 (625)
-++|.++|.|+.+....-+.... .. -..+|-+. ++.++|.+|+|||+|+++|
T Consensus 88 ~~~l~~dp~v~~a~qq~gf~r~krgyrp~~~fd~~~~dplf~~qwylkntgqaggk~rldlnv~~awa~g~tgknvttai 167 (629)
T KOG3526|consen 88 HAKLHNDPEVKMALQQEGFDRKKRGYRPINEFDINMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEAWALGYTGKNVTTAI 167 (629)
T ss_pred hhhhccChhHhhhhhccccchhhccCCchhhhccccCCcccceeeeeecccccCCcccccccHHHHHhhcccCCCceEEe
Confidence 57788888888765544332210 00 01112111 1346899999999999999
Q ss_pred cccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCCCCCCCCCCccccCCCCC--
Q 006930 140 FDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAGPIGGGINETVEFMSPRD-- 217 (625)
Q Consensus 140 IDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-- 217 (625)
.|.||||-|||+..+ ..--.+++|++ ++ +.++....|
T Consensus 168 mddgvdymhpdlk~n-------------------------ynaeasydfss------nd----------pfpyprytddw 206 (629)
T KOG3526|consen 168 MDDGVDYMHPDLKSN-------------------------YNAEASYDFSS------ND----------PFPYPRYTDDW 206 (629)
T ss_pred ecCCchhcCcchhcc-------------------------cCceeeccccc------CC----------CCCCCcccchh
Confidence 999999999999732 12223334433 22 233333333
Q ss_pred CCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHHHH-cCCCEEEeccCCCC
Q 006930 218 ADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVN-DGVDVISISIGGGD 296 (625)
Q Consensus 218 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~-~~~~VIn~S~G~~~ 296 (625)
.+.|||.|||-+++..+|+... .|||.+.|+..+|+++. .+..|+++|-..--+ ..++|.+-|||...
T Consensus 207 fnshgtrcagev~aardngicg--------vgvaydskvagirmldq---pymtdlieansmghep~kihiysaswgptd 275 (629)
T KOG3526|consen 207 FNSHGTRCAGEVVAARDNGICG--------VGVAYDSKVAGIRMLDQ---PYMTDLIEANSMGHEPSKIHIYSASWGPTD 275 (629)
T ss_pred hhccCccccceeeeeccCCcee--------eeeeeccccceeeecCC---chhhhhhhhcccCCCCceEEEEecccCcCC
Confidence 6889999999988877776543 59999999999999987 566666655332222 35789999999873
Q ss_pred CCCCCCCCCh---HHhhHHHhhh-----CCcEEEEecCCCCCC
Q 006930 297 GISSPYYLDP---IAIGSYGAAS-----RGVFVSSSAGNDGPN 331 (625)
Q Consensus 297 g~~~~~~~~~---~~~~~~~a~~-----~Gi~vV~AAGN~g~~ 331 (625)
.....+.+ ..+++.+-++ .|-++|.|.|..|.+
T Consensus 276 --dgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 276 --DGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred --CCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 22222222 2222222222 477999999998854
No 42
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.1e-24 Score=236.65 Aligned_cols=251 Identities=36% Similarity=0.472 Sum_probs=188.4
Q ss_pred CCCccC--CCCCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCC
Q 006930 123 QGLWSE--SDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAG 200 (625)
Q Consensus 123 ~~~~~~--~~tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 200 (625)
...|.. +.+|+||+|+|||+||+..||+|.++... .++|.. ..
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~------~~-- 174 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVD------GD-- 174 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------cccccc------CC--
Confidence 456776 89999999999999999999999864210 011211 11
Q ss_pred CCCCCCCCccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCC-CCCChhhHHHHHHH
Q 006930 201 PIGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKN-AGCFDSDILAAFDA 279 (625)
Q Consensus 201 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-~~~~~~~i~~ai~~ 279 (625)
+.....|..+|||||+|++++....+ .....|++|+++++.++++... +.....+++++|++
T Consensus 175 ----------~~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~ 237 (508)
T COG1404 175 ----------PEPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEG 237 (508)
T ss_pred ----------CCCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHH
Confidence 00025688999999999999842111 1113899999999999999975 56778888999999
Q ss_pred HHHcC--CCEEEeccCCCCCCCCCCCCChHHhhHHHhhhCC-cEEEEecCCCCCCCC----cccCCC--CceEEeecCCC
Q 006930 280 AVNDG--VDVISISIGGGDGISSPYYLDPIAIGSYGAASRG-VFVSSSAGNDGPNGM----SVTNLA--PWIVTVGAGTI 350 (625)
Q Consensus 280 a~~~~--~~VIn~S~G~~~g~~~~~~~~~~~~~~~~a~~~G-i~vV~AAGN~g~~~~----~~~~~~--~~vitVga~~~ 350 (625)
+.+.+ +++||||+|.. ...........++.++...| +++|+|+||.+.+.. .++... +.+++|++...
T Consensus 238 ~~~~~~~~~~in~s~g~~---~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~ 314 (508)
T COG1404 238 AANLGGPADVINLSLGGS---LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL 314 (508)
T ss_pred HHhcCCCCcEEEecCCCC---ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC
Confidence 99999 99999999985 22234555666666777777 999999999997752 223322 36666666321
Q ss_pred CCceeeEEEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHH
Q 006930 351 DRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVK 430 (625)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~ 430 (625)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCCC
Q 006930 431 KAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGLN 510 (625)
Q Consensus 431 ~~g~~g~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 510 (625)
.+....||++|...
T Consensus 315 ----------------------------------------------------------------~~~~~~~s~~g~~~-- 328 (508)
T COG1404 315 ----------------------------------------------------------------SDTVASFSNDGSPT-- 328 (508)
T ss_pred ----------------------------------------------------------------CCccccccccCCCC--
Confidence 13668899999851
Q ss_pred CCCCCCccccCCCcEEe-----eecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Q 006930 511 PEILKPDLIAPGVNILA-----AWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHP-DWSPAAIRSAMM 584 (625)
Q Consensus 511 ~~~~KPdi~APG~~i~s-----~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-~lt~~~vk~~L~ 584 (625)
+.+++|||.++.+ ++++.. ..|..++||||++|+|+|++||+++.+| .+++.+++..+.
T Consensus 329 ----~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~ 393 (508)
T COG1404 329 ----GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIV 393 (508)
T ss_pred ----CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHh
Confidence 1299999999988 444431 1489999999999999999999999999 899999999999
Q ss_pred hcccc
Q 006930 585 TTASI 589 (625)
Q Consensus 585 ~tA~~ 589 (625)
.++..
T Consensus 394 ~~~~~ 398 (508)
T COG1404 394 TTAGL 398 (508)
T ss_pred hcccc
Confidence 88874
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.77 E-value=6.2e-18 Score=177.18 Aligned_cols=103 Identities=31% Similarity=0.384 Sum_probs=81.2
Q ss_pred ccccCCccceeeeeeccCCCCCChhhHHHHHHHHHHc---CCCEEEeccCCCCCCCCCCCCChHHhhHHHhhhCCcEEEE
Q 006930 247 AKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVND---GVDVISISIGGGDGISSPYYLDPIAIGSYGAASRGVFVSS 323 (625)
Q Consensus 247 ~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~---~~~VIn~S~G~~~g~~~~~~~~~~~~~~~~a~~~Gi~vV~ 323 (625)
..||||+|+|+.+++.++. ...++.++.+++.+ +++|||+|||.........+...+..++.++..+|++||+
T Consensus 83 ~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 83 AGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 4899999999999997662 45678888888887 9999999999883111111235677777788999999999
Q ss_pred ecCCCCCCCC-----------cccCCCCceEEeecCCCCCc
Q 006930 324 SAGNDGPNGM-----------SVTNLAPWIVTVGAGTIDRN 353 (625)
Q Consensus 324 AAGN~g~~~~-----------~~~~~~~~vitVga~~~~~~ 353 (625)
|+||+|.... .+++.+|+|++||+++....
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999997653 35688999999999877543
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.12 E-value=8.4e-10 Score=99.93 Aligned_cols=117 Identities=29% Similarity=0.403 Sum_probs=92.0
Q ss_pred CCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccccC-CCcc
Q 006930 378 SEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGD-AHLL 456 (625)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~-~~~~ 456 (625)
.....+++|.+. |....+...+++|+|++|+|+.|.+.++..+++++||.|++++++.......... ...+
T Consensus 24 ~~~~~~lv~~g~--------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~i 95 (143)
T cd02133 24 LGKTYELVDAGL--------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFI 95 (143)
T ss_pred CCcEEEEEEccC--------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeE
Confidence 346788888654 4444555678999999999999999999999999999999999887653322222 2568
Q ss_pred CEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCC
Q 006930 457 PACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPN 507 (625)
Q Consensus 457 p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~ 507 (625)
|++.|+..+|..|+.++.+ .+++.+..+.. ......++.||||||.
T Consensus 96 P~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 96 PVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred eEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCC
Confidence 9999999999999999988 55666666544 3456679999999997
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.99 E-value=8.6e-09 Score=91.38 Aligned_cols=121 Identities=55% Similarity=0.935 Sum_probs=97.4
Q ss_pred EEeCCCeeeeeeecccCCCCCCceeeEEecCC-CCCcccccccCCCCCCCccCceEEEEecCCC-chhhHHHHHHHcCce
Q 006930 358 VRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGK-SGVLSASLCMENSLDPNLVRGKIVICDRGSS-PRVAKGLVVKKAGGV 435 (625)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~-~~~~~~~~~~~~g~~ 435 (625)
++++|+.++.|++++.... ..++++|... ........|........+++|||++|+++.| .+.++..++++.||.
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 5788999999999996443 4567766333 2344557899888888899999999999999 889999999999999
Q ss_pred EEEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeE
Q 006930 436 GMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTA 481 (625)
Q Consensus 436 g~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~ 481 (625)
|+|++++.............+|++.|...++..|++|+.+..++++
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~ 124 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTA 124 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCcce
Confidence 9999988765444433456799999999999999999998766544
No 46
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.3e-09 Score=112.29 Aligned_cols=291 Identities=19% Similarity=0.181 Sum_probs=176.5
Q ss_pred ccCCCccCCCCCCccEEEEcccccCCCCCCCCCCCCCCCCCCccccccccccccccCCCcceeeeeeecccccccCCCCC
Q 006930 121 NQQGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNIGSIPSKWKGVCQVGVKFTAKNCNKKIIGARFFSKGHEAAGGSAG 200 (625)
Q Consensus 121 ~~~~~~~~~~tG~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 200 (625)
++...|..+++|+++.|+|.|+|++..||++... ....+..++... .
T Consensus 21 ~v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~------~-- 67 (431)
T KOG3525|consen 21 NVQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRH------D-- 67 (431)
T ss_pred eeeeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecC------C--
Confidence 3567899999999999999999999999998742 122233333221 1
Q ss_pred CCCCCCCCccccCCCCCCCCCccccchhhccccCCCCCcccccCccccccCCccceeeeeeccCCCCCChhhHHHHHHHH
Q 006930 201 PIGGGINETVEFMSPRDADGHGTHTASTAAGRHAFRASMEGYAAGVAKGVAPKARLAVYKVCWKNAGCFDSDILAAFDAA 280 (625)
Q Consensus 201 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a 280 (625)
+.+.+..+......|||-|++-.+...++..-. .|+++++++..+|++... .++...+....
T Consensus 68 ------~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C~--------vg~~~~~~~~g~~~l~~~----v~~~~~~~~~~ 129 (431)
T KOG3525|consen 68 ------NDPEPRCDGTNENKHGTRCAGCVAARANNLTCG--------VGVAYNATIGGIRMLAGC----VSDAVEAPSLG 129 (431)
T ss_pred ------CCcccccCCCCccccCCCCCcccccccCCCcCC--------CCcccCccccceeeeeee----cccceeccccc
Confidence 112222333346889999999999886443322 699999999999998661 11222332222
Q ss_pred HH-cCCCEEEeccCCCCCCCCCCC---CChHHhhHHH-----hhhCCcEEEEecCCCCCCCCccc--CCCCceEEeecCC
Q 006930 281 VN-DGVDVISISIGGGDGISSPYY---LDPIAIGSYG-----AASRGVFVSSSAGNDGPNGMSVT--NLAPWIVTVGAGT 349 (625)
Q Consensus 281 ~~-~~~~VIn~S~G~~~g~~~~~~---~~~~~~~~~~-----a~~~Gi~vV~AAGN~g~~~~~~~--~~~~~vitVga~~ 349 (625)
.. ..+++-..|||... ..... ......+... ...+|-++|+|.||.+....... ...+++.++.-..
T Consensus 130 ~~~~~~di~scsw~pdd--d~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~c~c~~y~~~i~t~~~~~ 207 (431)
T KOG3525|consen 130 FGPCHIDIYSCSWGPDD--DGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDSCHCDGYTNSIYTLSISC 207 (431)
T ss_pred CCCCCceeecCcCCccc--CCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccccccccccCcceeccccc
Confidence 22 35789999999873 11111 1112222222 24578999999999987654322 2222232222111
Q ss_pred CCCceeeEEEeCCCeeeeeeecccCCCCCCceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHH
Q 006930 350 IDRNFPAEVRLGDGRRLSGVSLYAGAPLSEKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVV 429 (625)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~ 429 (625)
++... . ..+| ...|
T Consensus 208 ~~~~~--------------------------~-~p~y--------~~~C------------------------------- 221 (431)
T KOG3525|consen 208 ATQCG--------------------------K-KPQY--------RERC------------------------------- 221 (431)
T ss_pred ccccC--------------------------C-Cccc--------cccc-------------------------------
Confidence 11100 0 0000 0000
Q ss_pred HHcCceEEEEEeCCCCCCccccCCCccCEEEeChhhHHHHHHHHHcCCCCeEEEEecceeecCcCCCcccccCCCCCCCC
Q 006930 430 KKAGGVGMILANGISNGEGLVGDAHLLPACALGSDEGDAVKAYISSTANPTATIDFKGTILGIKPAPVVASFSARGPNGL 509 (625)
Q Consensus 430 ~~~g~~g~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gp~~~ 509 (625)
.....+.+|+.+|...
T Consensus 222 ----------------------------------------------------------------~~~~~s~~s~~~~~~~ 237 (431)
T KOG3525|consen 222 ----------------------------------------------------------------ASCLASTYSSGGPTEE 237 (431)
T ss_pred ----------------------------------------------------------------cccccccccCCCCcce
Confidence 1123466778888221
Q ss_pred CCCCCCCccccCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 006930 510 NPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTASI 589 (625)
Q Consensus 510 ~~~~~KPdi~APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~L~~tA~~ 589 (625)
-|..+.... ..-....|||.++|+.||+.+|.++++|.++..++..+...+++.
T Consensus 238 --------------~~~~~~~~~------------~c~e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~ 291 (431)
T KOG3525|consen 238 --------------CIVCTDPRH------------SCTEGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRP 291 (431)
T ss_pred --------------eeeecCCCc------------cccccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcch
Confidence 222222221 144567899999999999999999999999999999999999988
Q ss_pred ccCCCCCCccCCCCCCCCCCcccccccCcccc
Q 006930 590 VDNSNQPMTDEATGNASTPYDFGAGHVNLDRA 621 (625)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~G~G~ld~~~A 621 (625)
..........+..+..+. ..+|+|++|+.+-
T Consensus 292 ~~~~~~~~~~n~~g~~~~-h~~g~~~~~~~~~ 322 (431)
T KOG3525|consen 292 KVLLKGKWKSNGAGGLVS-HLYGFGLLDAKAL 322 (431)
T ss_pred hhccCCCceEecCCceee-eeecccccCcchh
Confidence 765444444333333333 4899999998653
No 47
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.77 E-value=1.2e-08 Score=82.96 Aligned_cols=72 Identities=31% Similarity=0.544 Sum_probs=56.0
Q ss_pred eEEEEeCCCCCCCC-cchhhhhhhhhcC--------CCceEEEEeccceeeEEEEeCHHHHHHHhCCCCeeEEEeccccc
Q 006930 37 TFIFRIDSQSKPSI-FPTHYHWYSSEFA--------SPVQILHTYDTVFHGFSATLSPDQAASLSRHPSVLAVIEDQRRQ 107 (625)
Q Consensus 37 ~yiV~~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~p~V~~v~~~~~~~ 107 (625)
+|||.||+...... ...+.+++.+.+. ...++.+.|...|+||+++++++++++|+++|+|++|+|+..++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999976554 5555555553322 27899999998899999999999999999999999999999887
Q ss_pred c
Q 006930 108 L 108 (625)
Q Consensus 108 ~ 108 (625)
+
T Consensus 81 l 81 (82)
T PF05922_consen 81 L 81 (82)
T ss_dssp E
T ss_pred c
Confidence 5
No 48
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.64 E-value=6.7e-07 Score=78.59 Aligned_cols=99 Identities=23% Similarity=0.302 Sum_probs=77.7
Q ss_pred ceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCc---ccc--CCC
Q 006930 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEG---LVG--DAH 454 (625)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~---~~~--~~~ 454 (625)
-+-++++.+. ...+.|.+..+...+++|+|++++|+.|.+.+|..+++++||.+++++|+...... ... ...
T Consensus 17 i~~~lv~~~~---~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~ 93 (122)
T cd04816 17 VTAPLVPLDP---ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDL 93 (122)
T ss_pred cEEEEEEcCC---CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCC
Confidence 3446666432 33578998887778899999999999999999999999999999999987763211 111 234
Q ss_pred ccCEEEeChhhHHHHHHHHHcCCCCeE
Q 006930 455 LLPACALGSDEGDAVKAYISSTANPTA 481 (625)
Q Consensus 455 ~~p~~~i~~~~~~~l~~~~~~~~~~~~ 481 (625)
.+|++.|+..+|+.|++++.++.+.++
T Consensus 94 ~iP~~~Is~~~G~~l~~~l~~g~~v~~ 120 (122)
T cd04816 94 KVPVGVITKAAGAALRRRLGAGETLEL 120 (122)
T ss_pred eeeEEEEcHHHHHHHHHHHcCCCEEEE
Confidence 699999999999999999988765443
No 49
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.62 E-value=2.8e-07 Score=82.20 Aligned_cols=90 Identities=13% Similarity=0.102 Sum_probs=74.0
Q ss_pred cccccccCCCC--CCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCC-Ccc--ccC-CCccCEEEeChhhH
Q 006930 393 LSASLCMENSL--DPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNG-EGL--VGD-AHLLPACALGSDEG 466 (625)
Q Consensus 393 ~~~~~c~~~~~--~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~-~~~--~~~-~~~~p~~~i~~~~~ 466 (625)
...+.|.+... .+.++.++|+|++||.|.|.+|..+++++||.+++++|+.... ..+ ..+ ...+|++.|+..+|
T Consensus 42 ~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G 121 (138)
T cd02122 42 NDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKG 121 (138)
T ss_pred CCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHH
Confidence 34578998876 5678999999999999999999999999999999999988732 122 112 24789999999999
Q ss_pred HHHHHHHHcCCCCeEE
Q 006930 467 DAVKAYISSTANPTAT 482 (625)
Q Consensus 467 ~~l~~~~~~~~~~~~~ 482 (625)
+.|+.++..+.+++++
T Consensus 122 ~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 122 MEILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHHcCCcEEEe
Confidence 9999999988776554
No 50
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5.5e-07 Score=102.71 Aligned_cols=96 Identities=23% Similarity=0.293 Sum_probs=59.5
Q ss_pred cccCCccceeeeeeccCCCCCChhhHHHHHHHHHHcCC-CEEEeccCCCCCC--CCCCCCChHHhhHHHhhhCCcEEEEe
Q 006930 248 KGVAPKARLAVYKVCWKNAGCFDSDILAAFDAAVNDGV-DVISISIGGGDGI--SSPYYLDPIAIGSYGAASRGVFVSSS 324 (625)
Q Consensus 248 ~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~~~-~VIn~S~G~~~g~--~~~~~~~~~~~~~~~a~~~Gi~vV~A 324 (625)
.-+||+|+|..|-.- ......+..|+.+....-+ -++-.||+..... ..+.+.+.+....+.+..+|+.+++|
T Consensus 289 ~A~AP~A~I~lvvap----~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AA 364 (1174)
T COG4934 289 HAMAPKANIDLVVAP----NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAA 364 (1174)
T ss_pred hccCccCceEEEEcC----CCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEe
Confidence 578999999998762 1233333344444333211 2333566653210 11113344555566788999999999
Q ss_pred cCCCCCCCC--------cccCCCCceEEeec
Q 006930 325 AGNDGPNGM--------SVTNLAPWIVTVGA 347 (625)
Q Consensus 325 AGN~g~~~~--------~~~~~~~~vitVga 347 (625)
+|.+|.... ..++.+|+|.+||.
T Consensus 365 SGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 365 SGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred cccccccCCCcccceeecccCCCccEEeecC
Confidence 999986653 34578999999998
No 51
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.61 E-value=4.6e-07 Score=78.07 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=74.0
Q ss_pred ceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCc--cc--cCCCc
Q 006930 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEG--LV--GDAHL 455 (625)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~--~~--~~~~~ 455 (625)
..+|++... ....|....+.+.+++|+|++++||.|.|.+|..+++++||.+++++|+...... .. .....
T Consensus 20 ~~~~~~~~~-----~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~ 94 (120)
T cd02129 20 TLLPLRNLT-----SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKID 94 (120)
T ss_pred cceeeecCC-----CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCc
Confidence 456666543 3577999888888999999999999999999999999999999999998763111 11 13457
Q ss_pred cCEEEeChhhHHHHHHHHHc
Q 006930 456 LPACALGSDEGDAVKAYISS 475 (625)
Q Consensus 456 ~p~~~i~~~~~~~l~~~~~~ 475 (625)
||++.|+..+|..|.+.+..
T Consensus 95 IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 95 IPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred ccEEEEeHHHHHHHHHHhcc
Confidence 89999999999999988774
No 52
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.56 E-value=1.4e-06 Score=76.78 Aligned_cols=99 Identities=20% Similarity=0.213 Sum_probs=75.9
Q ss_pred eeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCcc-ccCCCccCEEE
Q 006930 382 YPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGL-VGDAHLLPACA 460 (625)
Q Consensus 382 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~-~~~~~~~p~~~ 460 (625)
+|++-.........+.|.+.+.+..+++|+|+|++||.|.|.+|..+++++|+.+++++|+.+..... ..+...+|.+.
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~ 107 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAV 107 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEE
Confidence 77766655555677899987666568999999999999999999999999999999999887643221 12233455555
Q ss_pred eChhhHHHHHHHHHcCCCCeE
Q 006930 461 LGSDEGDAVKAYISSTANPTA 481 (625)
Q Consensus 461 i~~~~~~~l~~~~~~~~~~~~ 481 (625)
+ ..+|+.|++.+..+...++
T Consensus 108 ~-~~~G~~l~~~l~~G~~vtv 127 (129)
T cd02124 108 T-PEDGEAWIDALAAGSNVTV 127 (129)
T ss_pred e-HHHHHHHHHHHhcCCeEEE
Confidence 5 9999999999987765443
No 53
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.55 E-value=6.9e-07 Score=77.48 Aligned_cols=88 Identities=22% Similarity=0.350 Sum_probs=70.9
Q ss_pred cccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCC-Cc-c--cc----CCCccCEEEeChhhH
Q 006930 395 ASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNG-EG-L--VG----DAHLLPACALGSDEG 466 (625)
Q Consensus 395 ~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~-~~-~--~~----~~~~~p~~~i~~~~~ 466 (625)
.+.|.+.. .+.+++++|+|++||.|.|.+|..+++++||.+++++|+.... .. + .. ....||++.|+..+|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 56798744 3567899999999999999999999999999999999876542 21 1 12 234799999999999
Q ss_pred HHHHHHHHcCCCCeEEE
Q 006930 467 DAVKAYISSTANPTATI 483 (625)
Q Consensus 467 ~~l~~~~~~~~~~~~~~ 483 (625)
..|+..+..+..+++.+
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999887765543
No 54
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.46 E-value=1.4e-06 Score=76.11 Aligned_cols=89 Identities=27% Similarity=0.424 Sum_probs=72.3
Q ss_pred cccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccc----cCCCccCEEEeChhhHHH
Q 006930 393 LSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLV----GDAHLLPACALGSDEGDA 468 (625)
Q Consensus 393 ~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~----~~~~~~p~~~i~~~~~~~ 468 (625)
...+.|.+.... .+++|+|++|+|+.|.+.++..++.++|+.|++++++......+. .....+|++.++..++..
T Consensus 25 ~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 25 SNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred CcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 456789888763 469999999999999999999999999999999998876522222 123469999999999999
Q ss_pred HHHHHHcCCCCeEE
Q 006930 469 VKAYISSTANPTAT 482 (625)
Q Consensus 469 l~~~~~~~~~~~~~ 482 (625)
|+.++..+.+++++
T Consensus 104 l~~~l~~g~~v~v~ 117 (118)
T cd04818 104 LKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999987765543
No 55
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.45 E-value=4.3e-06 Score=73.47 Aligned_cols=96 Identities=22% Similarity=0.370 Sum_probs=74.0
Q ss_pred ceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCC-Cc-cc--cCCCc
Q 006930 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNG-EG-LV--GDAHL 455 (625)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~-~~-~~--~~~~~ 455 (625)
.+-++++.. ...|.+..+ +.+++|+|++++|+.|.+.+|..+++++||.++|++|+...+ .. .. .+...
T Consensus 22 ~~g~lv~~~------~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~ 94 (122)
T cd02130 22 VTGPLVVVP------NLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPY 94 (122)
T ss_pred cEEEEEEeC------CCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCE
Confidence 345556532 456886555 357999999999999999999999999999999999887322 11 11 12457
Q ss_pred cCEEEeChhhHHHHHHHHHcCCCCeEE
Q 006930 456 LPACALGSDEGDAVKAYISSTANPTAT 482 (625)
Q Consensus 456 ~p~~~i~~~~~~~l~~~~~~~~~~~~~ 482 (625)
+|++.|+..+|..|+..+.++.+.+++
T Consensus 95 Ip~v~Is~~~G~~L~~~l~~g~~v~~~ 121 (122)
T cd02130 95 VPTVGISQEDGKALVAALANGGEVSAN 121 (122)
T ss_pred eeEEEecHHHHHHHHHHHhcCCcEEEe
Confidence 999999999999999999988776554
No 56
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.44 E-value=1.4e-06 Score=76.83 Aligned_cols=86 Identities=30% Similarity=0.356 Sum_probs=69.3
Q ss_pred cccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCC-----Ccc--c-----cCCCccCEEEeC
Q 006930 395 ASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNG-----EGL--V-----GDAHLLPACALG 462 (625)
Q Consensus 395 ~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~-----~~~--~-----~~~~~~p~~~i~ 462 (625)
.+.|..... +..++|+|++++||.|.|.+|..+++++||.+++++|+.... ..+ . .+...||++.|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 578987654 557899999999999999999999999999999999876542 111 1 123578999999
Q ss_pred hhhHHHHHHHHHcCCCCeE
Q 006930 463 SDEGDAVKAYISSTANPTA 481 (625)
Q Consensus 463 ~~~~~~l~~~~~~~~~~~~ 481 (625)
..+|..|+..+..+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999988766544
No 57
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.43 E-value=1.5e-06 Score=78.08 Aligned_cols=84 Identities=15% Similarity=0.290 Sum_probs=69.1
Q ss_pred cccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCcccc------CCCccCEEEeChhhHHH
Q 006930 395 ASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVG------DAHLLPACALGSDEGDA 468 (625)
Q Consensus 395 ~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~------~~~~~p~~~i~~~~~~~ 468 (625)
.+.|.+.+ .+++|+|+|++||.|.|.+|..+++++||.++|++|+......+.. ....||++.|+..+|..
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 57898764 4799999999999999999999999999999999987754222211 13579999999999999
Q ss_pred HHHHHHcCCCCeE
Q 006930 469 VKAYISSTANPTA 481 (625)
Q Consensus 469 l~~~~~~~~~~~~ 481 (625)
|+..+..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998776554
No 58
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.39 E-value=2.2e-06 Score=75.35 Aligned_cols=89 Identities=19% Similarity=0.248 Sum_probs=69.6
Q ss_pred ccccccCCCCC--CC----ccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCC-cc----------ccCCCcc
Q 006930 394 SASLCMENSLD--PN----LVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGE-GL----------VGDAHLL 456 (625)
Q Consensus 394 ~~~~c~~~~~~--~~----~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~-~~----------~~~~~~~ 456 (625)
..+.|.+.... +. ...++|++++||.|.|.+|..+++++||.++|++|+.+... .. ..+...+
T Consensus 21 ~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 21 NRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred ccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 35678876543 22 47789999999999999999999999999999999866421 11 1123468
Q ss_pred CEEEeChhhHHHHHHHHHcCCCCeEE
Q 006930 457 PACALGSDEGDAVKAYISSTANPTAT 482 (625)
Q Consensus 457 p~~~i~~~~~~~l~~~~~~~~~~~~~ 482 (625)
|++.|+..+|+.|+..+..+..++++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 99999999999999999988766554
No 59
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.37 E-value=1e-06 Score=74.69 Aligned_cols=80 Identities=30% Similarity=0.408 Sum_probs=64.3
Q ss_pred ccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCC----CCccccCCCccCEEEeChhhHHHH
Q 006930 394 SASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN----GEGLVGDAHLLPACALGSDEGDAV 469 (625)
Q Consensus 394 ~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~----~~~~~~~~~~~p~~~i~~~~~~~l 469 (625)
....|....+...+++|+|++|+||.|.+.+|..+++++||.|+|+++.... ..........+|++.|+..+++.|
T Consensus 18 ~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 18 DEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp ECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred CcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 3455777778889999999999999999999999999999999999992221 122334457899999999999999
Q ss_pred HHHH
Q 006930 470 KAYI 473 (625)
Q Consensus 470 ~~~~ 473 (625)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9875
No 60
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.28 E-value=5.7e-06 Score=73.12 Aligned_cols=88 Identities=20% Similarity=0.257 Sum_probs=71.4
Q ss_pred ccccccCCC--CCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCC-cccc-----CCCccCEEEeChhh
Q 006930 394 SASLCMENS--LDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGE-GLVG-----DAHLLPACALGSDE 465 (625)
Q Consensus 394 ~~~~c~~~~--~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~-~~~~-----~~~~~p~~~i~~~~ 465 (625)
....|.... +...+++|+|++|+++.|.+.++..+++++||.|++++++..... .... ....+|++.|+..+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345688877 677889999999999999999999999999999999998876321 1111 34579999999999
Q ss_pred HHHHHHHHHcCCCCeE
Q 006930 466 GDAVKAYISSTANPTA 481 (625)
Q Consensus 466 ~~~l~~~~~~~~~~~~ 481 (625)
+..|+.++.++.+.++
T Consensus 109 g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 109 GEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHhcCCceEE
Confidence 9999999988665443
No 61
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.25 E-value=6e-06 Score=71.47 Aligned_cols=81 Identities=14% Similarity=0.232 Sum_probs=65.8
Q ss_pred cccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCC--ccc----cCCCccCEEEeChhhH
Q 006930 393 LSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGE--GLV----GDAHLLPACALGSDEG 466 (625)
Q Consensus 393 ~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~--~~~----~~~~~~p~~~i~~~~~ 466 (625)
...+.|... +..+++|+|++++||.|.|.+|..+++++||.+++++|+..... .+. .....+|++.++..++
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 445789766 55789999999999999999999999999999999998776421 111 2235799999999999
Q ss_pred HHHHHHHHc
Q 006930 467 DAVKAYISS 475 (625)
Q Consensus 467 ~~l~~~~~~ 475 (625)
..|+.++.+
T Consensus 103 ~~L~~l~~~ 111 (117)
T cd04813 103 HLLSSLLPK 111 (117)
T ss_pred HHHHHhccc
Confidence 999887654
No 62
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.24 E-value=5.8e-06 Score=73.42 Aligned_cols=74 Identities=19% Similarity=0.327 Sum_probs=61.0
Q ss_pred CCCCccCceEEEEecCCCc-----hhhHHHHHHHcCceEEEEEeCC--CCC-CccccC---CCccCEEEeChhhHHHHHH
Q 006930 403 LDPNLVRGKIVICDRGSSP-----RVAKGLVVKKAGGVGMILANGI--SNG-EGLVGD---AHLLPACALGSDEGDAVKA 471 (625)
Q Consensus 403 ~~~~~~~g~i~~~~~g~~~-----~~~~~~~~~~~g~~g~~~~~~~--~~~-~~~~~~---~~~~p~~~i~~~~~~~l~~ 471 (625)
+.+.+++|||+|++||.|. |.+|.++++++||.++|+||+. ... ..+..+ ...+|++.++..+|..|+.
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 4456899999999999999 9999999999999999999987 321 122232 3589999999999999999
Q ss_pred HHHcC
Q 006930 472 YISST 476 (625)
Q Consensus 472 ~~~~~ 476 (625)
.+.+.
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 88653
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.17 E-value=1.2e-05 Score=73.36 Aligned_cols=85 Identities=25% Similarity=0.305 Sum_probs=69.7
Q ss_pred ccccccCCCCCC---CccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCC-cccc-----CCCccCEEEeChh
Q 006930 394 SASLCMENSLDP---NLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGE-GLVG-----DAHLLPACALGSD 464 (625)
Q Consensus 394 ~~~~c~~~~~~~---~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~-~~~~-----~~~~~p~~~i~~~ 464 (625)
..+.|......+ ....++|++++||.|.|.+|..+++++||.+++++|+..... .+.. ....||++.|+..
T Consensus 49 p~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~ 128 (153)
T cd02123 49 PLNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKS 128 (153)
T ss_pred ccccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHH
Confidence 356898877644 789999999999999999999999999999999999876422 2222 2357999999999
Q ss_pred hHHHHHHHHHcCCC
Q 006930 465 EGDAVKAYISSTAN 478 (625)
Q Consensus 465 ~~~~l~~~~~~~~~ 478 (625)
+|..|+.++.....
T Consensus 129 dg~~L~~~l~~~~~ 142 (153)
T cd02123 129 TGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999887644
No 64
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.92 E-value=0.00016 Score=63.83 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=70.2
Q ss_pred CceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCC--chhhHHHHHHHcCceEEEEEeCCCCCCccc------
Q 006930 379 EKMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSS--PRVAKGLVVKKAGGVGMILANGISNGEGLV------ 450 (625)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~--~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~------ 450 (625)
..+.+++|.+.. ....+...+++|+|++++++.| .+..+..++.+.||.|+|+++.........
T Consensus 22 ~~~~~lV~~g~G--------~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~ 93 (127)
T cd04819 22 EAKGEPVDAGYG--------LPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTE 93 (127)
T ss_pred CeeEEEEEeCCC--------CHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccccc
Confidence 457788886642 1222335579999999999999 889999999999999999998765432211
Q ss_pred -cCCCccCEEEeChhhHHHHHHHHHcCCC
Q 006930 451 -GDAHLLPACALGSDEGDAVKAYISSTAN 478 (625)
Q Consensus 451 -~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 478 (625)
.....+|++.|+..++..|...+..+..
T Consensus 94 ~~~~~~IP~v~Is~edg~~L~~~l~~g~~ 122 (127)
T cd04819 94 DGPPSPIPAASVSGEDGLRLARVAERNDT 122 (127)
T ss_pred CCCCCCCCEEEEeHHHHHHHHHHHhcCCc
Confidence 1235799999999999999999987543
No 65
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.11 E-value=0.0027 Score=56.61 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=60.9
Q ss_pred CCCccCceEEEEecCCC------chhhH-------HHHHHHcCceEEEEEeCCCC-------CCccc-cCCCccCEEEeC
Q 006930 404 DPNLVRGKIVICDRGSS------PRVAK-------GLVVKKAGGVGMILANGISN-------GEGLV-GDAHLLPACALG 462 (625)
Q Consensus 404 ~~~~~~g~i~~~~~g~~------~~~~~-------~~~~~~~g~~g~~~~~~~~~-------~~~~~-~~~~~~p~~~i~ 462 (625)
...+++|||++++++.| .+..+ ...+.++||.++|+++.... +.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35689999999999999 88887 79999999999999985422 11111 223469999999
Q ss_pred hhhHHHHHHHHHcCCCCeE
Q 006930 463 SDEGDAVKAYISSTANPTA 481 (625)
Q Consensus 463 ~~~~~~l~~~~~~~~~~~~ 481 (625)
..++..|...+..+..+.+
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999888765443
No 66
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.02 E-value=0.029 Score=52.24 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=55.9
Q ss_pred CCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCc------------------------------cc-c--
Q 006930 405 PNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEG------------------------------LV-G-- 451 (625)
Q Consensus 405 ~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~------------------------------~~-~-- 451 (625)
..+++|+|+|++++.|.+.+|..++++.||.|+|+|++...... +. .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 45789999999999999999999999999999999987421000 00 0
Q ss_pred -CCCccCEEEeChhhHHHHHHHHHc
Q 006930 452 -DAHLLPACALGSDEGDAVKAYISS 475 (625)
Q Consensus 452 -~~~~~p~~~i~~~~~~~l~~~~~~ 475 (625)
.-..||++.|+..++..|++.+..
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 113588999999999999998764
No 67
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.68 E-value=0.042 Score=57.47 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=66.1
Q ss_pred CCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCC------CccccCCCccCEEEeChhhHHHHHHHHHcCCC
Q 006930 405 PNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNG------EGLVGDAHLLPACALGSDEGDAVKAYISSTAN 478 (625)
Q Consensus 405 ~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~------~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 478 (625)
...++++++++.||.|.|.+|.+.++++||.++++.|+..+- .........||++.+..++++.+......+.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 567899999999999999999999999999999999985532 23334457899999999999999987777666
Q ss_pred CeEEEEe
Q 006930 479 PTATIDF 485 (625)
Q Consensus 479 ~~~~~~~ 485 (625)
+++.+-.
T Consensus 171 V~~~lYa 177 (541)
T KOG2442|consen 171 VELALYA 177 (541)
T ss_pred EEEEEEC
Confidence 5555443
No 68
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=95.38 E-value=0.073 Score=47.56 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=51.6
Q ss_pred ceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCC------------------chhhHHHHHHHcCceEEEEEe
Q 006930 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSS------------------PRVAKGLVVKKAGGVGMILAN 441 (625)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~------------------~~~~~~~~~~~~g~~g~~~~~ 441 (625)
...+++|.+.+. ....|....+..-+++|||+++.++.| .+..|.+.+.++||.|+|+++
T Consensus 20 ~~aelVfvGyGi--~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~ 97 (142)
T cd04814 20 KDAPLVFVGYGI--KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVH 97 (142)
T ss_pred cceeeEEecCCc--CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEe
Confidence 467888876532 234677778888899999999999877 467799999999999999998
Q ss_pred CCCC
Q 006930 442 GISN 445 (625)
Q Consensus 442 ~~~~ 445 (625)
+...
T Consensus 98 ~~~~ 101 (142)
T cd04814 98 ELAP 101 (142)
T ss_pred CCCc
Confidence 8764
No 69
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=94.69 E-value=0.041 Score=48.53 Aligned_cols=94 Identities=19% Similarity=0.246 Sum_probs=69.9
Q ss_pred cccccccCCCCCCCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCcc------cc----CCCccCEEEeC
Q 006930 393 LSASLCMENSLDPNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGL------VG----DAHLLPACALG 462 (625)
Q Consensus 393 ~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~------~~----~~~~~p~~~i~ 462 (625)
+...+|.... +.-...+.+++++||.|+|..|..+++++|+.++++.++......+ .. +...+|++.+-
T Consensus 72 dPp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fll 150 (193)
T KOG3920|consen 72 DPPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLL 150 (193)
T ss_pred CChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEe
Confidence 3456777644 2345678899999999999999999999999999998776643322 22 34789999998
Q ss_pred hhhHHHHHHHHHcCCCCeEEEEecc
Q 006930 463 SDEGDAVKAYISSTANPTATIDFKG 487 (625)
Q Consensus 463 ~~~~~~l~~~~~~~~~~~~~~~~~~ 487 (625)
..+|-.++..+..-....+.+.++-
T Consensus 151 g~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 151 GVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred ccceEEEehhHHHhCCccEEEeccc
Confidence 8888877777776666666555543
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.68 E-value=0.11 Score=46.09 Aligned_cols=64 Identities=27% Similarity=0.283 Sum_probs=50.6
Q ss_pred ceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCc------------hhhHHHHHHHcCceEEEEEeCCCC
Q 006930 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSP------------RVAKGLVVKKAGGVGMILANGISN 445 (625)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~------------~~~~~~~~~~~g~~g~~~~~~~~~ 445 (625)
.+-+++|.+-+. ....|....+..-+++|||+++.++.|. +..|.+++.++||.|+|++++...
T Consensus 22 v~gelVfvGyG~--~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYGL--VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCCc--CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 456777766532 2356777777778999999999998763 668999999999999999988664
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.14 E-value=0.27 Score=44.47 Aligned_cols=64 Identities=22% Similarity=0.261 Sum_probs=49.4
Q ss_pred ceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCC------------------CchhhHHHHHHHcCceEEEEEe
Q 006930 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGS------------------SPRVAKGLVVKKAGGVGMILAN 441 (625)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~------------------~~~~~~~~~~~~~g~~g~~~~~ 441 (625)
.+-+++|.+-+. ....|....+..-+++|||+++.++. |.+..|..++.+.|+.|+|+++
T Consensus 20 vtg~lVfvGyGi--~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~ 97 (151)
T cd04822 20 VTAPVVFAGYGI--TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVN 97 (151)
T ss_pred ceEeEEEecCCc--CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEe
Confidence 456777766432 23557666677789999999998763 5677899999999999999998
Q ss_pred CCCC
Q 006930 442 GISN 445 (625)
Q Consensus 442 ~~~~ 445 (625)
+...
T Consensus 98 d~~~ 101 (151)
T cd04822 98 GPNS 101 (151)
T ss_pred CCcc
Confidence 8764
No 72
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=92.61 E-value=0.19 Score=44.95 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=36.9
Q ss_pred CccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCC
Q 006930 406 NLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (625)
Q Consensus 406 ~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~ 445 (625)
-+++|+|++++.|...+..|.+++++.||.|+|+|.++..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhh
Confidence 5699999999999999999999999999999999988654
No 73
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.31 E-value=0.45 Score=48.73 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=63.3
Q ss_pred ccccccCCCCC---CCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCCCCccc----cCCCccCEEEeChhhH
Q 006930 394 SASLCMENSLD---PNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLV----GDAHLLPACALGSDEG 466 (625)
Q Consensus 394 ~~~~c~~~~~~---~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~----~~~~~~p~~~i~~~~~ 466 (625)
..++|++.... .......++++.||+|+|.+|..+++++|..++|+||+........ .....++++.++...|
T Consensus 61 p~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~g 140 (348)
T KOG4628|consen 61 PLNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSG 140 (348)
T ss_pred CccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehH
Confidence 44778875432 3456678999999999999999999999999999999877543222 2346788999999999
Q ss_pred HHHHHHHHc
Q 006930 467 DAVKAYISS 475 (625)
Q Consensus 467 ~~l~~~~~~ 475 (625)
+.+.+|...
T Consensus 141 e~l~~~~~~ 149 (348)
T KOG4628|consen 141 ELLSSYAGR 149 (348)
T ss_pred HHHHHhhcc
Confidence 988886443
No 74
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=92.20 E-value=0.39 Score=46.35 Aligned_cols=58 Identities=28% Similarity=0.301 Sum_probs=45.8
Q ss_pred ceeeEEecCCCCCcccccccCCCCC-----CCccCceEEEEecCCCchhhHHHHHHHcCceEEEEEeCCCC
Q 006930 380 KMYPLIYPGKSGVLSASLCMENSLD-----PNLVRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISN 445 (625)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~c~~~~~~-----~~~~~g~i~~~~~g~~~~~~~~~~~~~~g~~g~~~~~~~~~ 445 (625)
.+-+++|.+. |....+. .-+++|+|++++++.+.+..|.+++++.||.|+|++++...
T Consensus 45 v~g~lVyvny--------G~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 45 VTAELVYANY--------GSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred ceEEEEEcCC--------CcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 4667777654 4333222 45799999999999998899999999999999999988654
No 75
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=79.04 E-value=1.2 Score=50.58 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.9
Q ss_pred CCCCCccEEEEcccccCCCCCCCC
Q 006930 129 SDYGSDVIIGVFDTGIWPERRSFS 152 (625)
Q Consensus 129 ~~tG~gv~VaVIDtGid~~Hp~f~ 152 (625)
.+.|+||+|||+|||+|+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 578999999999999999988876
No 76
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=73.55 E-value=16 Score=33.30 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=41.3
Q ss_pred ceeeEEecCCCCCcccccccCCCCCCCccCceEEEEecCCCch-------------------hhHHHHHHHcCceEEEEE
Q 006930 380 KMYPLIYPGKSGVLSASLCMENSLDPNLVRGKIVICDRGSSPR-------------------VAKGLVVKKAGGVGMILA 440 (625)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~i~~~~~g~~~~-------------------~~~~~~~~~~g~~g~~~~ 440 (625)
..-+++|.+-+-.... -....+..-+++|||+++..+...+ ..|.+.+.+.||.|+|+.
T Consensus 22 ~~~elVFvGyGi~ape--~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v 99 (157)
T cd04821 22 KDSPLVFVGYGIVAPE--YGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIV 99 (157)
T ss_pred ccCCEEEeccCccCcc--cCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEE
Confidence 4556676655321111 1112445678999999998664322 248999999999999998
Q ss_pred eCCC
Q 006930 441 NGIS 444 (625)
Q Consensus 441 ~~~~ 444 (625)
....
T Consensus 100 ~~~~ 103 (157)
T cd04821 100 HETE 103 (157)
T ss_pred eCCC
Confidence 7654
No 77
>PRK15019 CsdA-binding activator; Provisional
Probab=42.04 E-value=27 Score=31.50 Aligned_cols=33 Identities=24% Similarity=0.200 Sum_probs=27.9
Q ss_pred cccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHH
Q 006930 548 NILSGTSMACPHVSGAAALLKSAHPDWSPAAIRS 581 (625)
Q Consensus 548 ~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~ 581 (625)
..+.|.| =|++|-|.+||+++.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4445555 57999999999999999999999876
No 78
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=40.45 E-value=30 Score=30.87 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=28.9
Q ss_pred ccccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 006930 547 FNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSA 582 (625)
Q Consensus 547 y~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~ 582 (625)
-..+.|.| =|++|-|++||+++.+-+.+|++|.+.
T Consensus 71 ~~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 71 TLHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 34455666 589999999999999999999998744
No 79
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=39.45 E-value=29 Score=22.30 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHH
Q 006930 555 MACPHVSGAAALL 567 (625)
Q Consensus 555 mAaP~VAG~aALl 567 (625)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998754
No 80
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=39.04 E-value=34 Score=23.32 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=19.9
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhcccc
Q 006930 564 AALLKSAHPDWSPAAIRSAMMTTASI 589 (625)
Q Consensus 564 aALl~~~~p~lt~~~vk~~L~~tA~~ 589 (625)
+--|++.||++++..|+..|...-..
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~~~ 30 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANNGD 30 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCCC
Confidence 34578899999999999999765433
No 81
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.03 E-value=32 Score=30.69 Aligned_cols=33 Identities=27% Similarity=0.175 Sum_probs=26.6
Q ss_pred cccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHH
Q 006930 548 NILSGTSMACPHVSGAAALLKSAHPDWSPAAIRS 581 (625)
Q Consensus 548 ~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~ 581 (625)
..|.|=|= |++|.|.+|++++.+-..||++|.+
T Consensus 72 ~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 72 LHFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 44455553 6899999999999999999998754
No 82
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=37.03 E-value=36 Score=30.34 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=28.0
Q ss_pred cccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHH
Q 006930 548 NILSGTSMACPHVSGAAALLKSAHPDWSPAAIRS 581 (625)
Q Consensus 548 ~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~ 581 (625)
..+.|.| =|+.|-|.+||+++.+-..||++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4455666 58999999999999999999999875
No 83
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=35.68 E-value=45 Score=28.04 Aligned_cols=10 Identities=0% Similarity=0.069 Sum_probs=5.6
Q ss_pred EEEEeCCCCC
Q 006930 38 FIFRIDSQSK 47 (625)
Q Consensus 38 yiV~~~~~~~ 47 (625)
..+..++++.
T Consensus 37 ~~~tV~~GDT 46 (103)
T PRK14125 37 VEITVQEGDT 46 (103)
T ss_pred EEEEECCCCC
Confidence 3444477765
No 84
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=34.20 E-value=44 Score=29.23 Aligned_cols=34 Identities=24% Similarity=0.150 Sum_probs=27.0
Q ss_pred cccCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 006930 548 NILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSA 582 (625)
Q Consensus 548 ~~~sGTSmAaP~VAG~aALl~~~~p~lt~~~vk~~ 582 (625)
..+.|.|= |+.|-|++||+++.+-+.||++|.+.
T Consensus 58 ~~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 58 VHFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 35556664 67999999999999999999998764
No 85
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=31.74 E-value=74 Score=21.69 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=22.1
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhcccc
Q 006930 563 AAALLKSAHPDWSPAAIRSAMMTTASI 589 (625)
Q Consensus 563 ~aALl~~~~p~lt~~~vk~~L~~tA~~ 589 (625)
.+..|++.||+++...|+..|...-..
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~g~ 31 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANNGN 31 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCC
Confidence 456788999999999999999965433
No 86
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=30.06 E-value=50 Score=24.19 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=22.2
Q ss_pred ccccCchhhhHHHHHHHH------HHHHHhCCCCCHHHHHHHHH
Q 006930 547 FNILSGTSMACPHVSGAA------ALLKSAHPDWSPAAIRSAMM 584 (625)
Q Consensus 547 y~~~sGTSmAaP~VAG~a------ALl~~~~p~lt~~~vk~~L~ 584 (625)
--.+.||=+..=.|.... .-+++.||.|+.++|++.|.
T Consensus 11 ~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 11 QPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp --EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred cceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 345566666555554442 24566799999999999874
No 87
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=29.53 E-value=40 Score=29.62 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=11.8
Q ss_pred CCCchhHHHHHHHHHhhhhhh
Q 006930 5 PYSSLPLQFLFFLLLSGSFLQ 25 (625)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (625)
||.++.+++++|++++++++.
T Consensus 1 RW~l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYC 21 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHH
Confidence 566666666555555544443
No 88
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=26.83 E-value=3e+02 Score=21.40 Aligned_cols=61 Identities=15% Similarity=0.068 Sum_probs=39.4
Q ss_pred EEEEeCCCCCCCCcchhhhhhhhhcCCCceEEEEeccceeeEEEEeCHH----HHHHHhCCCCeeEEEecccccccc
Q 006930 38 FIFRIDSQSKPSIFPTHYHWYSSEFASPVQILHTYDTVFHGFSATLSPD----QAASLSRHPSVLAVIEDQRRQLHT 110 (625)
Q Consensus 38 yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~L~~~p~V~~v~~~~~~~~~~ 110 (625)
.||.|...-+ .+.|++-+.+.+.-. -++-+.+-++++ .+++|++++.|+.|++...-.+..
T Consensus 4 liVyl~~~k~-----------~r~L~kfG~i~Y~Sk-k~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S~~~~l~~ 68 (71)
T PF09902_consen 4 LIVYLYSLKD-----------ARQLRKFGDIHYVSK-KMKYVVLYVNEEDVEEIIEKLKKLKFVKKVEPSPRPELDT 68 (71)
T ss_pred EEEEEechHh-----------HHhHhhcccEEEEEC-CccEEEEEECHHHHHHHHHHHhcCCCeeEEeccChhhccC
Confidence 5666666543 223444455565555 455566667754 457789999999999987665543
No 89
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=24.97 E-value=85 Score=32.95 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=43.6
Q ss_pred CCcccccCCCCCCCCCCCCCCCccccCCCcEEeeecCCCCCCCCCCCcccccccccCchhhhHHHHHHHHHHH
Q 006930 495 APVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDLRKTEFNILSGTSMACPHVSGAAALL 567 (625)
Q Consensus 495 ~~~~a~fSs~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 567 (625)
.+........|||. -.-||+.+||+...|+.+.+.... .-...+=|=.|+|.+|.++|+.
T Consensus 354 AG~~~~~pgCg~CL----g~~~gvL~~gE~c~STSNRNF~GR---------qG~~~a~~~L~SPA~AAAaAv~ 413 (423)
T COG0065 354 AGFEWREPGCGPCL----GMHPGVLGPGERCASTSNRNFEGR---------QGSPGARTYLASPAMAAAAAVE 413 (423)
T ss_pred cCcEEcCCCCcccc----ccCCCcCCCCCEEeeccCCCCCcc---------CCCCCCeEEecCHHHHHHHHhh
Confidence 45677788899996 456899999999999988874311 1112233557999999999874
No 90
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=23.19 E-value=40 Score=14.40 Aligned_cols=6 Identities=33% Similarity=0.839 Sum_probs=3.6
Q ss_pred ccCCCC
Q 006930 500 SFSARG 505 (625)
Q Consensus 500 ~fSs~G 505 (625)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 466665
No 91
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=22.86 E-value=1.3e+02 Score=17.35 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=14.2
Q ss_pred hhhhHHHHHHHHHHHHHh
Q 006930 553 TSMACPHVSGAAALLKSA 570 (625)
Q Consensus 553 TSmAaP~VAG~aALl~~~ 570 (625)
+..-+|.+.|++-.+.++
T Consensus 2 ~~iIaPi~VGvvl~l~~~ 19 (21)
T PF13955_consen 2 TTIIAPIVVGVVLTLFDH 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceehhhHHHHHHHHHHHh
Confidence 456799999998877664
No 92
>PRK02302 hypothetical protein; Provisional
Probab=21.81 E-value=3.2e+02 Score=22.33 Aligned_cols=68 Identities=9% Similarity=0.001 Sum_probs=44.1
Q ss_pred ceEEEEeCCCCCCCCcchhhhhhhhhcCCCceEEEEeccceeeEEEEeCHH----HHHHHhCCCCeeEEEeccccccccC
Q 006930 36 KTFIFRIDSQSKPSIFPTHYHWYSSEFASPVQILHTYDTVFHGFSATLSPD----QAASLSRHPSVLAVIEDQRRQLHTT 111 (625)
Q Consensus 36 ~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~L~~~p~V~~v~~~~~~~~~~~ 111 (625)
.-.||.|+.-.+ ...|++-+.+.+.-. -.+-+.+-++++ .+++|++++.|+.|++...-.+..+
T Consensus 8 ~glIVyl~~~k~-----------~r~LrkfG~I~Y~Sk-k~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S~~~~l~~~ 75 (89)
T PRK02302 8 IGLIVYLYYNRD-----------ARKLSKYGDIVYHSK-RSRYLVLYVNKEDVEQKLEELSKLKFVKKVRPSAIDEIDQN 75 (89)
T ss_pred eEEEEEEeecHh-----------HHHHhhcCcEEEEec-cccEEEEEECHHHHHHHHHHHhcCCCeeEEcccCchhccch
Confidence 356777766544 223444455565555 455566666654 4577899999999999988777655
Q ss_pred CCcc
Q 006930 112 RSPQ 115 (625)
Q Consensus 112 ~~~~ 115 (625)
....
T Consensus 76 f~~~ 79 (89)
T PRK02302 76 FVGN 79 (89)
T ss_pred hhhh
Confidence 4433
Done!