Query 006931
Match_columns 625
No_of_seqs 381 out of 3370
Neff 10.2
Searched_HMMs 13730
Date Mon Mar 25 12:45:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006931.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006931hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ewka_ c.93.1.1 (A:) Metabotr 100.0 1.8E-53 1.3E-57 449.6 39.9 371 22-414 5-468 (477)
2 d1dp4a_ c.93.1.1 (A:) Hormone 100.0 1.1E-47 7.7E-52 400.7 40.7 385 26-456 2-423 (425)
3 d1jdpa_ c.93.1.1 (A:) Hormone 100.0 2.6E-43 1.9E-47 364.1 36.9 364 23-416 4-395 (401)
4 d1usga_ c.93.1.1 (A:) Leucine- 100.0 2E-39 1.5E-43 327.9 30.7 336 25-404 1-341 (346)
5 d1qo0a_ c.93.1.1 (A:) Amide re 100.0 2.6E-36 1.9E-40 307.7 32.8 341 26-408 2-348 (373)
6 d3ckma1 c.93.1.1 (A:257-573) Y 99.9 7.3E-25 5.3E-29 217.3 23.2 308 28-408 2-317 (317)
7 d2a5sa1 c.94.1.1 (A:7-142,A:14 99.7 2.7E-18 2E-22 165.4 6.4 102 484-587 50-155 (277)
8 d1pb7a_ c.94.1.1 (A:) N-methyl 99.5 8.2E-15 6E-19 141.8 6.4 105 461-570 37-151 (289)
9 d1mqia_ c.94.1.1 (A:) Glutamat 99.5 1.4E-14 1E-18 137.9 7.7 104 462-570 2-117 (260)
10 d2f34a1 c.94.1.1 (A:5-116,A:11 99.4 2.2E-13 1.6E-17 128.1 7.3 105 463-570 1-114 (246)
11 d1wdna_ c.94.1.1 (A:) Glutamin 99.3 2.8E-12 2E-16 118.5 9.5 95 464-571 2-96 (223)
12 d1ii5a_ c.94.1.1 (A:) Glutamat 99.2 6.6E-12 4.8E-16 116.1 9.3 99 461-570 3-104 (226)
13 d1lsta_ c.94.1.1 (A:) Lysine-, 99.2 6.1E-12 4.4E-16 117.4 7.5 98 462-571 4-101 (238)
14 d1xt8a1 c.94.1.1 (A:10-257) Pu 99.1 4.4E-11 3.2E-15 112.0 8.8 100 461-570 10-110 (248)
15 d1jyea_ c.93.1.1 (A:) Lac-repr 98.0 0.00017 1.2E-08 67.0 18.3 204 27-251 1-209 (271)
16 d2fvya1 c.93.1.1 (A:2-306) Gal 97.9 0.00085 6.2E-08 63.0 22.1 208 26-243 1-226 (305)
17 d1jx6a_ c.93.1.1 (A:) Quorum-s 97.8 0.00071 5.2E-08 64.9 20.3 211 22-243 36-255 (338)
18 d1dbqa_ c.93.1.1 (A:) Purine r 97.6 0.0023 1.7E-07 59.1 20.1 207 28-252 2-213 (282)
19 d8abpa_ c.93.1.1 (A:) L-arabin 97.6 0.0043 3.1E-07 58.0 21.9 217 26-254 1-231 (305)
20 d2nzug1 c.93.1.1 (G:58-332) Gl 97.4 0.0024 1.7E-07 58.8 17.3 208 26-253 3-216 (275)
21 d2dria_ c.93.1.1 (A:) D-ribose 97.3 0.009 6.5E-07 54.5 19.4 195 28-242 3-205 (271)
22 d1byka_ c.93.1.1 (A:) Trehalos 97.2 0.0065 4.7E-07 55.1 16.5 190 27-243 3-196 (255)
23 d1guda_ c.93.1.1 (A:) D-allose 97.0 0.032 2.3E-06 51.2 20.4 215 28-255 3-228 (288)
24 d1tjya_ c.93.1.1 (A:) AI-2 rec 95.9 0.48 3.5E-05 43.2 21.0 210 26-254 3-222 (316)
25 d1vlja_ e.22.1.2 (A:) NADH-dep 88.5 0.56 4.1E-05 44.8 8.4 80 148-229 23-103 (398)
26 d1rrma_ e.22.1.2 (A:) Lactalde 86.6 0.48 3.5E-05 45.0 6.6 88 147-236 18-107 (385)
27 d1o2da_ e.22.1.2 (A:) Alcohol 82.5 1.8 0.00013 40.3 8.7 85 148-235 18-105 (359)
28 d1vmea1 c.23.5.1 (A:251-398) R 71.1 17 0.0012 28.0 10.4 87 160-253 4-98 (148)
29 d1y5ea1 c.57.1.1 (A:12-166) Mo 69.2 9.7 0.00071 30.0 8.4 64 161-228 4-71 (155)
30 d1dbqa_ c.93.1.1 (A:) Purine r 68.6 4.4 0.00032 35.6 6.9 64 160-228 1-66 (282)
31 d1jq5a_ e.22.1.2 (A:) Glycerol 68.0 4.3 0.00032 37.7 6.9 77 148-229 20-96 (366)
32 d1al3a_ c.94.1.1 (A:) Cofactor 65.8 5.6 0.00041 33.9 6.8 84 461-569 5-88 (237)
33 d1jyea_ c.93.1.1 (A:) Lac-repr 63.9 8.2 0.0006 33.7 7.7 78 162-243 3-82 (271)
34 d1tjya_ c.93.1.1 (A:) AI-2 rec 63.2 5.1 0.00037 35.8 6.2 80 160-243 4-86 (316)
35 d1guda_ c.93.1.1 (A:) D-allose 62.8 7.6 0.00055 34.1 7.3 81 160-243 2-85 (288)
36 d8abpa_ c.93.1.1 (A:) L-arabin 62.0 11 0.00082 33.2 8.4 77 161-243 3-82 (305)
37 d2pjua1 c.92.3.1 (A:11-196) Pr 61.5 27 0.002 28.3 9.9 135 66-244 27-162 (186)
38 d2dria_ c.93.1.1 (A:) D-ribose 60.5 8.2 0.0006 33.4 7.0 79 160-243 2-83 (271)
39 d1ozha1 c.31.1.3 (A:188-366) C 60.3 8.3 0.00061 31.3 6.5 63 78-140 7-73 (179)
40 d2qy9a2 c.37.1.10 (A:285-495) 58.9 19 0.0014 29.9 8.6 72 151-228 30-101 (211)
41 d1ybha1 c.31.1.3 (A:281-459) A 56.2 13 0.00097 30.0 7.1 61 78-139 6-68 (179)
42 d2h8pc1 f.14.1.1 (C:22-78) Pot 56.1 3.9 0.00028 26.1 2.7 34 588-625 13-46 (57)
43 d1nrza_ c.38.1.1 (A:) Sorbose 54.2 12 0.00089 29.7 6.2 82 146-237 14-95 (163)
44 d2bona1 e.52.1.2 (A:5-299) Lip 53.3 43 0.0031 29.1 10.9 74 163-242 4-77 (295)
45 d1mb3a_ c.23.1.1 (A:) Cell div 53.3 24 0.0017 26.1 7.7 68 160-242 2-71 (123)
46 d1e5da1 c.23.5.1 (A:251-402) R 52.7 32 0.0024 26.4 8.8 76 160-245 3-86 (152)
47 d1ckea_ c.37.1.1 (A:) CMP kina 52.3 3.2 0.00024 35.1 2.5 32 91-122 4-35 (225)
48 d1zesa1 c.23.1.1 (A:3-123) Pho 51.4 41 0.003 24.6 9.5 80 160-254 1-82 (121)
49 d1mkza_ c.57.1.1 (A:) MoaB {Es 50.5 42 0.0031 26.5 9.2 69 156-228 5-77 (170)
50 d2ihta1 c.31.1.3 (A:198-374) C 49.5 8.6 0.00062 31.1 4.7 63 78-141 6-72 (177)
51 d1q6za1 c.31.1.3 (A:182-341) B 49.5 15 0.0011 28.9 6.2 65 78-142 6-74 (160)
52 d1u0sy_ c.23.1.1 (Y:) CheY pro 47.6 47 0.0034 24.2 10.1 59 174-242 12-72 (118)
53 d2fvya1 c.93.1.1 (A:2-306) Gal 46.3 30 0.0022 30.0 8.6 79 160-243 2-84 (305)
54 d1uuya_ c.57.1.1 (A:) Plant CN 45.7 45 0.0033 26.0 8.5 64 161-228 5-79 (161)
55 d1krwa_ c.23.1.1 (A:) NTRC rec 45.5 38 0.0027 25.0 7.7 65 164-242 7-73 (123)
56 d2ez9a1 c.31.1.3 (A:183-365) P 44.8 10 0.00075 30.9 4.4 61 78-139 17-79 (183)
57 d2djia1 c.31.1.3 (A:187-363) P 44.6 16 0.0011 29.5 5.6 61 78-139 8-70 (177)
58 d1ccwa_ c.23.6.1 (A:) Glutamat 44.1 56 0.0041 24.7 8.6 75 160-243 4-83 (137)
59 d2qv7a1 e.52.1.2 (A:1-312) Dia 43.5 44 0.0032 29.4 9.2 73 160-239 3-79 (312)
60 d1pvda1 c.31.1.3 (A:182-360) P 43.2 17 0.0013 29.2 5.7 61 78-139 17-81 (179)
61 d1zpda1 c.31.1.3 (A:188-362) P 42.9 19 0.0014 28.8 5.9 61 78-139 9-73 (175)
62 d7reqa2 c.23.6.1 (A:561-728) M 42.6 53 0.0038 25.9 8.4 75 161-243 39-117 (168)
63 d3adka_ c.37.1.1 (A:) Adenylat 42.6 8.9 0.00065 31.4 3.8 33 89-121 7-39 (194)
64 d1ixca2 c.94.1.1 (A:90-294) Ly 42.4 20 0.0014 28.6 6.1 58 462-541 2-59 (205)
65 d1xs5a_ c.94.1.1 (A:) Putative 41.7 15 0.0011 31.3 5.2 69 492-568 18-91 (240)
66 d1blea_ c.38.1.1 (A:) Fructose 41.6 11 0.00083 29.8 4.0 81 146-236 14-94 (161)
67 d1jx6a_ c.93.1.1 (A:) Quorum-s 41.6 32 0.0023 30.6 8.0 103 138-241 10-125 (338)
68 d1twya_ c.94.1.1 (A:) ABC tran 41.2 26 0.0019 29.7 6.9 48 522-570 38-86 (249)
69 d1ovma1 c.31.1.3 (A:181-341) I 41.0 12 0.00089 29.6 4.2 60 79-139 17-80 (161)
70 d1t9ba1 c.31.1.3 (A:290-460) A 39.5 45 0.0033 26.2 7.7 55 83-138 2-61 (171)
71 d1peya_ c.23.1.1 (A:) Sporulat 39.1 64 0.0047 23.4 9.4 57 175-242 13-71 (119)
72 d1y81a1 c.2.1.8 (A:6-121) Hypo 38.8 14 0.0011 27.3 4.0 86 160-254 2-89 (116)
73 d1ukza_ c.37.1.1 (A:) Uridylat 38.1 8.8 0.00064 31.5 3.0 31 91-121 9-39 (196)
74 d1ycga1 c.23.5.1 (A:251-399) N 38.0 76 0.0056 23.9 9.8 76 159-244 2-85 (149)
75 d2ozza1 c.94.1.1 (A:1-228) Hyp 37.5 4.4 0.00032 34.6 0.9 52 485-547 25-76 (228)
76 d1byka_ c.93.1.1 (A:) Trehalos 36.9 24 0.0017 30.1 5.9 65 160-229 3-69 (255)
77 d1o4va_ c.23.8.1 (A:) N5-CAIR 36.5 70 0.0051 25.1 8.0 65 161-229 2-66 (169)
78 d2d59a1 c.2.1.8 (A:4-142) Hypo 36.1 14 0.0011 28.3 3.7 90 158-256 18-109 (139)
79 d1ytla1 c.31.1.6 (A:17-174) Ac 36.0 26 0.0019 27.4 5.5 41 81-121 9-51 (158)
80 d2csua1 c.2.1.8 (A:1-129) Acet 35.5 14 0.001 28.0 3.5 91 157-256 6-99 (129)
81 d1q3ta_ c.37.1.1 (A:) CMP kina 35.4 8.3 0.0006 32.4 2.4 31 92-122 5-35 (223)
82 d2ayxa1 c.23.1.1 (A:817-949) S 34.5 82 0.006 23.3 8.8 57 175-242 20-78 (133)
83 d1oi7a2 c.23.4.1 (A:122-288) S 33.8 98 0.0071 24.1 8.8 84 158-246 22-107 (167)
84 d1yioa2 c.23.1.1 (A:3-130) Res 33.7 82 0.006 23.0 11.1 75 164-254 6-82 (128)
85 d1dbwa_ c.23.1.1 (A:) Transcri 33.6 81 0.0059 22.9 11.0 57 175-242 15-73 (123)
86 d1t5ia_ c.37.1.19 (A:) Spliceo 32.9 69 0.0051 25.0 7.8 77 135-222 5-81 (168)
87 d1jlja_ c.57.1.1 (A:) Gephyrin 32.7 67 0.0049 25.1 7.7 64 161-228 4-76 (169)
88 d1i4na_ c.1.2.4 (A:) Indole-3- 32.6 1E+02 0.0076 25.9 9.1 84 150-244 66-152 (251)
89 d1qf9a_ c.37.1.1 (A:) UMP/CMP 32.5 9.7 0.0007 31.1 2.3 31 91-121 7-37 (194)
90 d1qcza_ c.23.8.1 (A:) N5-CAIR 31.7 56 0.0041 25.6 6.6 65 161-229 3-67 (163)
91 d1p5dx1 c.84.1.1 (X:9-154) Pho 31.7 66 0.0048 24.5 7.2 52 145-196 26-77 (146)
92 d2pl1a1 c.23.1.1 (A:1-119) Pho 31.5 86 0.0063 22.6 10.4 65 164-242 4-70 (119)
93 d1okkd2 c.37.1.10 (D:97-303) G 31.4 1E+02 0.0075 25.0 8.8 72 151-228 27-98 (207)
94 d1p99a_ c.94.1.1 (A:) Putative 30.8 23 0.0016 30.3 4.7 42 492-541 14-55 (255)
95 d2g2ca1 c.57.1.1 (A:1-163) Put 30.5 19 0.0014 28.5 3.7 48 177-228 29-76 (163)
96 d2ftsa3 c.57.1.2 (A:499-653) G 30.3 61 0.0044 25.0 6.9 61 175-240 28-89 (155)
97 d1xmpa_ c.23.8.1 (A:) N5-CAIR 30.3 81 0.0059 24.3 7.3 64 162-229 4-67 (155)
98 d2ak3a1 c.37.1.1 (A:0-124,A:16 29.9 14 0.001 30.0 2.9 29 93-121 9-37 (189)
99 d1gega_ c.2.1.2 (A:) meso-2,3- 29.6 1.3E+02 0.0095 25.1 9.7 71 160-240 1-74 (255)
100 d2fyia1 c.94.1.1 (A:88-307) Ly 29.4 70 0.0051 25.7 7.7 85 461-570 5-89 (220)
101 d1teva_ c.37.1.1 (A:) UMP/CMP 29.3 12 0.0009 30.4 2.4 30 92-121 3-32 (194)
102 d1w25a1 c.23.1.1 (A:2-140) Res 29.1 1E+02 0.0076 22.8 11.2 76 165-254 6-83 (139)
103 d2fr1a1 c.2.1.2 (A:1657-1915) 28.9 1.2E+02 0.0091 25.1 9.5 77 135-217 11-87 (259)
104 d2ji7a1 c.31.1.3 (A:195-369) O 28.4 23 0.0017 28.2 4.0 44 78-121 6-53 (175)
105 d1mvoa_ c.23.1.1 (A:) PhoP rec 28.4 98 0.0072 22.3 10.1 78 160-254 3-82 (121)
106 d1otha1 c.78.1.1 (A:34-184) Or 28.3 1.1E+02 0.0077 23.4 7.9 81 26-120 46-128 (151)
107 d1fuka_ c.37.1.19 (A:) Initiat 28.1 1.1E+02 0.0081 23.5 8.2 75 140-223 8-82 (162)
108 d2bw0a2 c.65.1.1 (A:1-203) 10- 27.8 43 0.0031 27.4 5.7 78 146-229 11-88 (203)
109 d1pq4a_ c.92.2.2 (A:) Periplas 27.8 46 0.0034 28.9 6.3 43 182-226 203-245 (289)
110 d1f4pa_ c.23.5.1 (A:) Flavodox 27.7 31 0.0022 26.5 4.5 33 161-193 2-35 (147)
111 d3bula2 c.23.6.1 (A:741-896) M 27.5 1.1E+02 0.0083 23.4 8.0 84 161-254 8-95 (156)
112 d1u11a_ c.23.8.1 (A:) N5-CAIR 27.2 80 0.0058 24.5 6.8 65 161-229 4-68 (159)
113 d2nqra3 c.57.1.2 (A:178-326) M 27.0 1.2E+02 0.009 22.9 8.4 58 175-237 28-90 (149)
114 d1ys7a2 c.23.1.1 (A:7-127) Tra 26.6 1.1E+02 0.0078 22.1 10.5 65 164-242 5-71 (121)
115 d1jbea_ c.23.1.1 (A:) CheY pro 26.6 1.1E+02 0.008 22.3 10.0 58 175-242 16-75 (128)
116 d1s3ga1 c.37.1.1 (A:1-125,A:16 26.3 16 0.0012 29.3 2.6 29 93-121 3-31 (182)
117 d2nzug1 c.93.1.1 (G:58-332) Gl 26.1 59 0.0043 27.4 6.8 77 160-242 4-82 (275)
118 d1qkka_ c.23.1.1 (A:) Transcri 25.9 1.2E+02 0.0088 22.5 9.9 58 174-242 11-70 (140)
119 d1vmaa2 c.37.1.10 (A:82-294) G 25.8 1.6E+02 0.012 23.9 9.9 68 151-228 32-103 (213)
120 d1i6aa_ c.94.1.1 (A:) Hydrogen 25.8 63 0.0046 25.6 6.6 81 462-568 5-85 (212)
121 d1j6ua1 c.5.1.1 (A:0-88) UDP-N 25.1 90 0.0065 21.4 6.2 73 147-244 14-86 (89)
122 d1s2ma2 c.37.1.19 (A:252-422) 25.0 1.3E+02 0.0092 23.3 8.1 72 144-224 17-88 (171)
123 d1zh2a1 c.23.1.1 (A:2-120) Tra 24.9 1.1E+02 0.0083 21.8 9.5 64 164-241 4-69 (119)
124 d2d13a1 c.26.2.1 (A:2-227) Hyp 24.7 1.8E+02 0.013 23.9 9.2 96 106-228 53-148 (226)
125 d1vc4a_ c.1.2.4 (A:) Indole-3- 24.7 1.7E+02 0.012 24.6 9.0 86 149-244 69-156 (254)
126 d1tvca2 c.25.1.2 (A:111-251) M 24.6 1.3E+02 0.0093 22.3 8.1 26 220-245 102-127 (141)
127 d2esna2 c.94.1.1 (A:92-303) Pr 24.5 46 0.0034 26.5 5.5 59 461-541 7-65 (212)
128 d2al1a1 c.1.11.1 (A:142-436) E 24.4 2.1E+02 0.015 24.6 10.9 96 142-254 133-232 (295)
129 d1hv8a2 c.37.1.19 (A:211-365) 23.8 91 0.0066 23.7 6.9 69 145-223 15-83 (155)
130 d1pvva1 c.78.1.1 (A:1-150) Orn 23.8 1.1E+02 0.008 23.3 7.1 80 27-120 46-127 (150)
131 d2j0sa2 c.37.1.19 (A:244-411) 23.8 1.2E+02 0.0086 23.5 7.6 78 137-223 12-89 (168)
132 d1ny5a1 c.23.1.1 (A:1-137) Tra 23.6 1.3E+02 0.0096 22.1 10.7 58 174-242 11-70 (137)
133 d1xhfa1 c.23.1.1 (A:2-122) Aer 23.5 74 0.0054 23.1 5.9 56 175-241 14-71 (121)
134 d1j3ma_ d.129.7.1 (A:) Hypothe 23.4 1E+02 0.0074 22.5 6.8 68 173-251 11-80 (127)
135 d1ak2a1 c.37.1.1 (A:14-146,A:1 23.2 19 0.0014 29.1 2.4 29 93-121 6-34 (190)
136 d1kgsa2 c.23.1.1 (A:2-123) Pho 23.1 1.3E+02 0.0092 21.7 11.2 58 174-242 12-71 (122)
137 d1j8yf2 c.37.1.10 (F:87-297) G 23.0 98 0.0071 25.3 7.1 73 150-228 32-104 (211)
138 d1vlva1 c.78.1.1 (A:1-152) Orn 22.8 1.2E+02 0.009 23.0 7.3 80 27-120 47-128 (152)
139 d1dxha1 c.78.1.1 (A:1-150) Orn 22.0 60 0.0043 24.9 5.2 81 26-120 45-127 (150)
140 d1eh3a_ c.94.1.2 (A:) Lactofer 21.6 52 0.0038 29.2 5.3 42 491-540 16-57 (324)
141 d1a2oa1 c.23.1.1 (A:1-140) Met 21.5 1.5E+02 0.011 21.9 8.1 58 175-242 15-75 (140)
142 d1oboa_ c.23.5.1 (A:) Flavodox 21.4 42 0.003 26.5 4.2 32 160-191 2-34 (169)
143 d1b74a1 c.78.2.1 (A:1-105) Glu 21.4 72 0.0052 22.8 5.0 59 61-120 23-91 (105)
144 d7reqb2 c.23.6.1 (B:476-638) M 21.3 95 0.0069 24.1 6.3 95 148-254 23-123 (163)
145 d1zina1 c.37.1.1 (A:1-125,A:16 20.8 23 0.0017 28.1 2.6 29 93-121 3-31 (182)
146 d1o1xa_ c.121.1.1 (A:) Putativ 20.8 1.6E+02 0.012 22.2 8.0 61 168-229 9-71 (145)
147 d7reqa2 c.23.6.1 (A:561-728) M 20.6 1.5E+02 0.011 23.0 7.4 71 147-226 54-125 (168)
148 d1yx1a1 c.1.15.7 (A:3-252) Hyp 20.4 1.6E+02 0.012 24.3 8.4 77 149-226 23-101 (250)
149 d1p6qa_ c.23.1.1 (A:) CheY pro 20.2 1.1E+02 0.0079 22.3 6.4 58 174-242 17-77 (129)
150 d2f7wa1 c.57.1.1 (A:2-174) Mog 20.2 1.5E+02 0.011 23.0 7.5 65 160-228 3-75 (173)
151 d1a53a_ c.1.2.4 (A:) Indole-3- 20.0 2E+02 0.015 23.9 8.6 85 150-245 68-155 (247)
No 1
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=1.8e-53 Score=449.63 Aligned_cols=371 Identities=20% Similarity=0.312 Sum_probs=310.4
Q ss_pred CCCceEEEEEEeecCCC-----------------CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHH
Q 006931 22 LKPEVLNVGAIFSFGTV-----------------NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGA 84 (625)
Q Consensus 22 ~~~~~i~IG~i~~~~~~-----------------~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~ 84 (625)
..+|+|.||++||+|.. .|.+...||.+|||+||+++.||||++|++.++|+|+++..|++.+
T Consensus 5 ~~~Gd~~iGGlFp~h~~~~~~~~~~~~c~~~~~~~g~~~~~Am~~Aie~IN~~~~lLPn~tLg~~i~Dtc~~~~~a~~~~ 84 (477)
T d1ewka_ 5 RMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQS 84 (477)
T ss_dssp EECCSEEEEEEECSBCCCCTTTGGGTCCCCBCTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHH
T ss_pred EcCCCEEEEEEEECcCcCCCCCCCccccccccccccHHHHHHHHHHHHHHhCCCCcCCCCEEEEEEEEcCCChHHHHHHH
Confidence 45799999999999621 2566789999999999999999999999999999999999999999
Q ss_pred HHHHh-----------------------------cCcEEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCC-CCCC
Q 006931 85 LQFME-----------------------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYP 134 (625)
Q Consensus 85 ~~l~~-----------------------------~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~ 134 (625)
.+++. ++|.|||||.+|..+.+++.++..++||+|||+++++.|++ .+||
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aviGp~~s~~s~~va~~~~~~~iP~IS~~ats~~lsd~~~yp 164 (477)
T d1ewka_ 85 IEFIRDSLISIRDEKDGLNRCLPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYK 164 (477)
T ss_dssp HHHHC-----------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCT
T ss_pred HHHHHhhhcccccccccccccccCCccccccccccceEEEECCCcchhHHHHHHHhhhccCceeccccCCccccccccCC
Confidence 99873 25899999999999999999999999999999999999998 6899
Q ss_pred ceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHH
Q 006931 135 FFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV 214 (625)
Q Consensus 135 ~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i 214 (625)
+||||.|++..+++|++++++||||++|++|++++++|....+.|++.+++.|+||+..+.++.. ....++...++++
T Consensus 165 ~f~Rt~psd~~~~~ai~~ll~~f~W~~V~vi~~~d~~g~~~~~~l~~~~~~~~i~v~~~~~i~~~--~~~~~~~~~l~~l 242 (477)
T d1ewka_ 165 YFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSN--AGEKSFDRLLRKL 242 (477)
T ss_dssp TEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTT--CCHHHHHHHHHHH
T ss_pred ceEEecccchhhHHHHHHHHHHcCCcEEEEEEecchhHHHHHHHHHHHHHHcCcEEEEEeeccCC--CchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888765 5678899999999
Q ss_pred hcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhcccCCCCCChhhhhcccceEEEeeeCCCChhHHH
Q 006931 215 RMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRD 292 (625)
Q Consensus 215 ~~~--~~~vIvl~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 292 (625)
+++ ++||||+++....+..++++|+++||++. +.|+.++.+....... ........|.+++.+..+..+++++
T Consensus 243 ~~~~~~~rVIv~~~~~~~~~~ll~~a~~~g~~g~-~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~f~~ 317 (477)
T d1ewka_ 243 RERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGE-FSLIGSDGWADRDEVI----EGYEVEANGGITIKLQSPEVRSFDD 317 (477)
T ss_dssp HTTTTTCCEEEEECCHHHHHHHHHHHHHHTCCSC-CEEEECTTTTTCHHHH----TTCHHHHTTCEEEEECCCCCHHHHH
T ss_pred hhhccCceEEEEecCHHHHHHHHHHHHHcCccCC-ceEEEecccccchhhc----cccccccCcceEeeeccccchhHHH
Confidence 875 78999999999999999999999999864 6788877664432211 1122446678888888888877766
Q ss_pred HH---------------HHHHhhcCCC------------------------CCCCchhhhHhHHHHHHHHHHHHHHhcCC
Q 006931 293 FV---------------SRWNTLSNGS------------------------IGLNPYGLYAYDTVWMIARALKLFLDQGN 333 (625)
Q Consensus 293 f~---------------~~~~~~~~~~------------------------~~~~~~~~~~YDAv~~la~Al~~~~~~~~ 333 (625)
|. +.|++.|++. .....+++++|||||++|+|||+++++.+
T Consensus 318 ~~~~~~~~~~~~n~~~~~~w~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAV~a~A~AL~~~~~~~~ 397 (477)
T d1ewka_ 318 YFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKKVCTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALC 397 (477)
T ss_dssp HHTTCCTTTCCSCTTHHHHHHHHTTCBCTTCTTCCTTCCSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhcCcccCCCChHHHHHHHHHhCCCcccccccCccccccccchhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 54 3466665411 11234677899999999999999987643
Q ss_pred cccccCCCccCCCCCCccccCcccccCchHHHHHHHHhccccccee-eEEEccCCCccCCcEEEEEEee----CceeEEE
Q 006931 334 TISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSLLHPSYDIINVIE----HGYPQQI 408 (625)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG-~v~Fd~~G~r~~~~~~I~~~~~----~~~~~~v 408 (625)
.. ....|.....+ ++++|.++|++++|+|++| .|.||++|++ ...|+|+|++. ...+++|
T Consensus 398 ~~-------------~~~~~~~~~~~-~~~~l~~~l~~v~F~G~tG~~v~Fd~nGd~-~~~y~I~n~q~~~~~~~~~~~V 462 (477)
T d1ewka_ 398 PG-------------HVGLCDAMKPI-DGRKLLDFLIKSSFVGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHV 462 (477)
T ss_dssp TT-------------CSSCCGGGSSC-CHHHHHHHHHTCEEECTTSCEEECCTTSCC-CCCEEEEEEEECSSSCEEEEEE
T ss_pred CC-------------CCCcccCCCcC-CHHHHHHHHhcCeeECCCCCEEEECCCCCc-cceEEEEEEEECCCCcEEEEEE
Confidence 21 12245555555 5999999999999999999 5999999997 58899999973 2345999
Q ss_pred eEeeCC
Q 006931 409 GYWSNY 414 (625)
Q Consensus 409 G~w~~~ 414 (625)
|.|++.
T Consensus 463 G~w~~~ 468 (477)
T d1ewka_ 463 GTWHEG 468 (477)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 999864
No 2
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=1.1e-47 Score=400.65 Aligned_cols=385 Identities=15% Similarity=0.205 Sum_probs=308.8
Q ss_pred eEEEEEEeecCCC----CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-----ChHHHHHHHHHHHh-cCcEEE
Q 006931 26 VLNVGAIFSFGTV----NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-----NGFLSIMGALQFME-TDTLAI 95 (625)
Q Consensus 26 ~i~IG~i~~~~~~----~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~-----~~~~a~~~~~~l~~-~~v~av 95 (625)
+|+||+++|++.. .|.....|+++|||+||+++++|||++|+++++|+++ ++..++..+++++. ++|.+|
T Consensus 2 ~i~vg~~lPltg~~~~~~~~~~~~A~~lAv~~IN~~~~~l~g~~l~~~~~D~~~~~~~~~~~~~~~~a~~~~~~~~V~ai 81 (425)
T d1dp4a_ 2 DLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVF 81 (425)
T ss_dssp EEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSEE
T ss_pred cEEEEEEECCCCcccccchhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEECCCcccccCHHHHHHHHHHHHhcCCCeEE
Confidence 7999999999743 2566788999999999999999999999999999974 67888888888874 599999
Q ss_pred EcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCC-CCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcc
Q 006931 96 VGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRN 174 (625)
Q Consensus 96 iG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~ 174 (625)
|||.+|..+.++++++..++||+|+++++++.+++ ..||+|||+.|++..+..++++++++++|++|++++.++++|..
T Consensus 82 iG~~~S~~~~~v~~~~~~~~ip~is~~st~~~ls~~~~~~~~~r~~p~~~~~~~~~~~~l~~~~~~~vaii~~~d~~g~~ 161 (425)
T d1dp4a_ 82 LGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDD 161 (425)
T ss_dssp ECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSSC
T ss_pred ECCCChHHhhhhhhhhHhhCCeEEeeecccccccccccCCccccccccchHHHHHHHHHHHhccCceEEEEEeccccccc
Confidence 99999999999999999999999999999999998 67999999999999999999999999999999999999999985
Q ss_pred hHH------HHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCe
Q 006931 175 GVT------ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 248 (625)
Q Consensus 175 ~~~------~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~gm~~~~~ 248 (625)
... .+.+...+.++++......+.. .+++...+++++. .+++|++.+..+++..++++|+++||..+.|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~~ 236 (425)
T d1dp4a_ 162 RPCFFIVEGLYMRVRERLNITVNHQEFVEGD----PDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGEDY 236 (425)
T ss_dssp CHHHHHHHHHHHHHHHHHCCEEEEEEECTTC----GGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTTTC
T ss_pred hhhHHHHHHHHHHHHHhcceEEeeeeecCCc----hhHHHHHHHHhhh-cceeEEEecchhHHHHHHHHHHHhCCCCCce
Confidence 432 3333444557777766655543 6677777776664 5788888999999999999999999999999
Q ss_pred EEEeeCcchhcccCC------------CCCChhhhhcccceEEEeeeCCCChhHHHHHHHHHhhc----C---CCCCCCc
Q 006931 249 VWIATTWLSTFIDSK------------SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLS----N---GSIGLNP 309 (625)
Q Consensus 249 ~~i~~~~~~~~~~~~------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~----~---~~~~~~~ 309 (625)
+|+..+.+....... +...........+++.+.+..+..+.+++|.+++.+.+ + ....++.
T Consensus 237 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (425)
T d1dp4a_ 237 VFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLKNI 316 (425)
T ss_dssp EEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGGGH
T ss_pred EEEEecccccccccccccccccceeeccchhhHHHHHHhheeeeccCCCCChHHHHHHHHHHHHhhccCCCCccccccch
Confidence 999987543321110 11113344567788888888889999888887765543 2 1234567
Q ss_pred hhhhHhHHHHHHHHHHHHHHhcCCcccccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCc
Q 006931 310 YGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSL 389 (625)
Q Consensus 310 ~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r 389 (625)
+++++||||+++|+|+++++.++.. +.++.++.++|++++|+|++|+|+||++|+|
T Consensus 317 ~~~~~yDav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~G~tG~v~fd~nGdr 372 (425)
T d1dp4a_ 317 IPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLKIDRNGDR 372 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEEECTTSBB
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC------------------------CCCHHHHHHHHhCCeEecCCeeEEECCCCCc
Confidence 7889999999999999999876432 2268999999999999999999999999997
Q ss_pred cCCcEEEEEEe-eCceeEEEeEeeCCCCCcccCcccccCCCCCCCCCCCccceeEeCCCCCCCCccee
Q 006931 390 LHPSYDIINVI-EHGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWV 456 (625)
Q Consensus 390 ~~~~~~I~~~~-~~~~~~~vG~w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~W~~~~~~~P~s~~ 456 (625)
...|.|++++ .++.++.||.|++.++.. .....++|.||+|..+...|.|
T Consensus 373 -~~~y~i~~~~~~~~~~~~vg~~~~~~~~~----------------~~~~~~~i~W~~~~~P~d~p~c 423 (425)
T d1dp4a_ 373 -DTDFSLWDMDPETGAFRVVLNYNGTSQEL----------------MAVSEHKLYWPLGYPPPDVPKC 423 (425)
T ss_dssp -CCCEEEEEECTTTCCEEEEEEECTTTCCE----------------EESTTCCCCCTTSSCCCSSCTT
T ss_pred -ccceEEEEEECCCCeEEEEEEEECCCCeE----------------EecCCceeECCCCCCCCCCCCC
Confidence 5889999997 344559999998865311 1123357999998754444444
No 3
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.6e-43 Score=364.11 Aligned_cols=364 Identities=16% Similarity=0.202 Sum_probs=292.2
Q ss_pred CCceEEEEEEeecCC---CCchhHHHHHHHHHHHHhcCCCC----CCCcEEEEEEecCCCChHHHHHHHHHHHh---cCc
Q 006931 23 KPEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRV----LGGRKLSITMHDAKFNGFLSIMGALQFME---TDT 92 (625)
Q Consensus 23 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~IN~~~~i----L~g~~l~~~~~D~~~~~~~a~~~~~~l~~---~~v 92 (625)
.++.|+||+++|++. ..|.....|+++|+++||+++++ ++|++|++++.|++|++..+.+.+.++.. ++|
T Consensus 4 ~~~~i~igvllP~tg~~~~~~~~~~~a~~lAv~~iN~~g~~~~~~~~g~~i~~~~~D~~~~~~~~~~~~~~l~~~~~~~v 83 (401)
T d1jdpa_ 4 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARGAKP 83 (401)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHHHHHHHHHHTTTCCC
T ss_pred CCCccEEEEEECCCCchhhhhHHHHHHHHHHHHHHHhcCCccccCCCCcEEEEEEEeCCCCHHHHHHHHHHHHHhccCCc
Confidence 468999999999974 44677889999999999999874 56899999999999999998888887753 489
Q ss_pred EEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCC--CCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC
Q 006931 93 LAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP--LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD 170 (625)
Q Consensus 93 ~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~--~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~ 170 (625)
.+||||.+|..+.+++++++.+++|+|+++++++.+++ ..||++||+.|++..++.++++++++++|++|++|++|++
T Consensus 84 ~~iiG~~~s~~~~a~~~~~~~~~ip~is~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~~~v~il~~~d~ 163 (401)
T d1jdpa_ 84 DLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDK 163 (401)
T ss_dssp SEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred EEEECCCCcchhHHHHHHHHhcCCceeeccccccccccccccCCeEEEeccchHHHHHHHHHHHHhcCCcEEEEEEecCc
Confidence 99999999999999999999999999999999988887 4689999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHhc---cceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCC
Q 006931 171 QGRNGVTALGDKLAE---IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (625)
Q Consensus 171 ~g~~~~~~l~~~l~~---~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~gm~~~~ 247 (625)
||+.....++...+. .+..+......+.. ..+....++.+ ...+++|++++...++..+++++.+.|+...+
T Consensus 164 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~iv~~~~~~~~~~i~~~~~~~g~~~~~ 238 (401)
T d1jdpa_ 164 LERNCYFTLEGVHEVFQEEGLHTSIYSFDETK----DLDLEDIVRNI-QASERVVIMCASSDTIRSIMLVAHRHGMTSGD 238 (401)
T ss_dssp SSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS----CCCHHHHHHHH-HHHCSEEEEESCHHHHHHHHHHHHHTTCTTTT
T ss_pred ccchHHHHHHHHHHHhccceEEEEeeccccCc----hhHHHHHHHhh-ccCceeEEEEechHHHHHHHHHHHHhCCCCCC
Confidence 999876655555544 44444443333322 33444555544 45678899999999999999999999999999
Q ss_pred eEEEeeCcchhcccCC------CCCChhhhhcccceEEEeeeCCCChhHHHHHHHHHhhcCC-----CCCCCchhhhHhH
Q 006931 248 YVWIATTWLSTFIDSK------SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG-----SIGLNPYGLYAYD 316 (625)
Q Consensus 248 ~~~i~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~~~~~~~YD 316 (625)
|+||.++......... ............++..+....+..+.+++|.++|++.+.. ...++.+++.+||
T Consensus 239 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~a~~~yD 318 (401)
T d1jdpa_ 239 YAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFHD 318 (401)
T ss_dssp CEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHHH
T ss_pred eEEEeecccccccccCchhhccccchhHHHHHhhheeeccccCCCChHHHHHHHHHHHHHhhcCCCccccccHHHHHHHH
Confidence 9999987554321111 0011223455678888888888899999999998887642 2345678899999
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEE
Q 006931 317 TVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDI 396 (625)
Q Consensus 317 Av~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I 396 (625)
||+++++|++++++.+.. +.++.++.++|++++|+|++|+|+||++|+| ...|.+
T Consensus 319 av~l~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~G~tG~v~fd~~Gdr-~~~~~~ 373 (401)
T d1jdpa_ 319 AILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDR-YGDFSV 373 (401)
T ss_dssp HHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBB-CCEEEE
T ss_pred HHHHHHHHHHHHHhcCCC------------------------CCCHHHHHHHHhCCeEEcCceEEEECCCCCc-cCcEEE
Confidence 999999999998765432 2368999999999999999999999999997 688999
Q ss_pred EEEe--eCceeEEEeEeeCCCC
Q 006931 397 INVI--EHGYPQQIGYWSNYSG 416 (625)
Q Consensus 397 ~~~~--~~~~~~~vG~w~~~~~ 416 (625)
++++ .+|.++.||.|+..++
T Consensus 374 ~~~~~~~~g~~~~Vg~~~~~~~ 395 (401)
T d1jdpa_ 374 IAMTDVEAGTQEVIGDYFGKEG 395 (401)
T ss_dssp EEEEETTTTEEEEEEEEETTTT
T ss_pred EEEEECCCCEEEEEEEEECCCc
Confidence 8876 3566799999998764
No 4
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=2e-39 Score=327.92 Aligned_cols=336 Identities=14% Similarity=0.170 Sum_probs=289.6
Q ss_pred ceEEEEEEeecCC---CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCh
Q 006931 25 EVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (625)
Q Consensus 25 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s 101 (625)
++|+||+++|++. ..|.....|+++|+++||++++++ |++|+++++|++++|..+.+++.+|++++++++|||.++
T Consensus 1 d~I~IG~~~plsG~~a~~G~~~~~g~~lav~~iN~~ggi~-G~~i~lv~~D~~~~p~~a~~~~~~li~~~~~~vig~~~s 79 (346)
T d1usga_ 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIK-GDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCchHHhHHHHHHHHHHHHHHHHHcCCCC-CcEEEEEEecCCCCHHHHHHHHHHHHhcCCccccCCccC
Confidence 5899999999974 447788999999999999999996 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHH-HHHcCCcEEEEEEecCCCCcchHHHHH
Q 006931 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM-VSYFGWGEVIAIFNDDDQGRNGVTALG 180 (625)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~l-l~~~~W~~v~ii~~d~~~g~~~~~~l~ 180 (625)
..+.++++++..+++|+++++++++.+....++++||+.|++..+...+.++ .++++|+++++++.+++||....+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~g~~~~~~~~ 159 (346)
T d1usga_ 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred ccchhhhhhhhhccccccccccCChhhhccCccccccccccchhHHHHHHhhhhhccccceeEEecCchhhhHHHHHHHh
Confidence 9999999999999999999999998888777899999999999999999987 456889999999999999999999999
Q ss_pred HHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhcc
Q 006931 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (625)
Q Consensus 181 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~ 260 (625)
+.+++.|+++.....++.. ..++...+++++++++++|++.+.......+++++++.|+.. .++........
T Consensus 160 ~~~~~~g~~i~~~~~~~~~----~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~- 231 (346)
T d1usga_ 160 DGLKAANANVVFFDGITAG----EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKT---QFMGPEGVGNA- 231 (346)
T ss_dssp HHHHHTTCCEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---EEEECGGGCCT-
T ss_pred hhhhcccceEEEEEecCcc----ccchhhHHHHhhccCCCEEEEeccchhhhheeeccccccccc---eEEeeeeccCc-
Confidence 9999999999998888865 667889999999999999999999999999999999999753 34443322111
Q ss_pred cCCCCCChhhhhcccceEEEeeeCC-CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCcccccC
Q 006931 261 DSKSPLSLKTAKSILGALTLRQHTP-DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (625)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~ 339 (625)
.. ........+|.+...+..+ ..+..++|.+.|++.++ ..+..++..+|||+++++.|++++...
T Consensus 232 ~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~a~~~Yda~~~la~Al~~ags~-------- 297 (346)
T d1usga_ 232 SL----SNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK--DPSGPYVWITYAAVQSLATALERTGSD-------- 297 (346)
T ss_dssp TH----HHHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTC--CCCCHHHHHHHHHHHHHHHHHHHHCCC--------
T ss_pred ch----hhhhhccccceeeecccCCCcCchhhHHHHHHHHHhC--CCCCchHHHHHHHHHHHHHHHHHHCCC--------
Confidence 11 1334566778777666543 35667899999998876 456778999999999999999986211
Q ss_pred CCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeCce
Q 006931 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGY 404 (625)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~ 404 (625)
++.+|.++|+++.|+|++|+++||++|++....|.|++|+..|.
T Consensus 298 ---------------------d~~~l~~al~~~~~~g~~G~v~fd~~Gd~~~~~~~v~q~~~dG~ 341 (346)
T d1usga_ 298 ---------------------EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGS 341 (346)
T ss_dssp ---------------------CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSC
T ss_pred ---------------------CHHHHHHHHHhCCCccceEEEEECCCcCcCCCCEEEEEEEcCCe
Confidence 58899999999999999999999999998888899999986655
No 5
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=100.00 E-value=2.6e-36 Score=307.74 Aligned_cols=341 Identities=13% Similarity=0.073 Sum_probs=282.1
Q ss_pred eEEEEEEeecCC---CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCh
Q 006931 26 VLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSA 101 (625)
Q Consensus 26 ~i~IG~i~~~~~---~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~-~v~aviG~~~s 101 (625)
+| ||+++|++. ..|...+.|+++|+++||++||++ |++|+++.+|+++++..+++.+.+|+++ +|.+|||+.+|
T Consensus 2 pv-IG~~~p~tG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~i~l~~~D~~~~~~~a~~~a~~Li~~~~V~aiiG~~~S 79 (373)
T d1qo0a_ 2 PL-IGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMS 79 (373)
T ss_dssp CE-EEEECCSSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBCCEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCSH
T ss_pred CE-EEEEcCCcCchhhhhHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEEcCCCCHHHHHHHHHHHHhhCCceEEEechhh
Confidence 45 999999984 447888999999999999999996 9999999999999999999999999865 99999999999
Q ss_pred HHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHH
Q 006931 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD 181 (625)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~ 181 (625)
..+.+++++++..++|+++..+.+. ....+++||+.|++..+..++++++.+.+|+++++++.|+.||+...+.+++
T Consensus 80 ~~~~av~~~~~~~~vp~i~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~vaii~~d~~~g~~~~~~~~~ 156 (373)
T d1qo0a_ 80 HTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRH 156 (373)
T ss_dssp HHHHHHHHHHHHHTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHHHSCSEEEEEEESSHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHhCCcEEecccccc---cccCCceeeeccChHHHHHHHHHHHHhccCceeeeccCCccccHHHHhhhhh
Confidence 9999999999999999997644332 2346899999999999999999999999999999999999999999999999
Q ss_pred HHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchhccc
Q 006931 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261 (625)
Q Consensus 182 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~~~~ 261 (625)
.+++.|++|+..+.++.. ....|+..++.++++.++++|++.+...+...+++++.+.+.......+...........
T Consensus 157 ~~~~~G~~vv~~~~~~~~--~~~~d~~~~~~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 234 (373)
T d1qo0a_ 157 LYRQHGGTVLEEIYIPLY--PSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVA 234 (373)
T ss_dssp HHHTTTCEEEEEEEECSS--CCHHHHHHHHHHHHHHTCSEEEEECCSTTHHHHHHHHHHHHCSSCCCCEEESSCCHHHHT
T ss_pred hhhcccCceeEEEEccCc--cccchhHHHHHHHHhhCCCceeeccccchHHHHHHHHHHhcCccccccccccccchHHHh
Confidence 999999999877666543 448899999999999999999999999999999999888776554444443333222211
Q ss_pred CCCCCChhhhhcccceEEEeeeCC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCcccccC
Q 006931 262 SKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (625)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~ 339 (625)
. .......|.+....+.+ +.+..++|.++|+++++....++.++..+||+++++++|++++...
T Consensus 235 ~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~aY~a~~~~a~Ai~~ag~~-------- 300 (373)
T d1qo0a_ 235 K------MESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNW-------- 300 (373)
T ss_dssp T------SCHHHHTTCEEEESCCTTCCSHHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHHHHHHTSC--------
T ss_pred h------hhhhhhcCceeecccccccchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHhCCC--------
Confidence 1 12356677777765544 5678899999999999755555677889999999999999986321
Q ss_pred CCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeCceeEEE
Q 006931 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQI 408 (625)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~v 408 (625)
++.++.++|++++|+|.+|+++|++++++......|.+++.+|.+..|
T Consensus 301 ---------------------d~~~i~~aL~~~~~~~~~G~i~f~~~~~~~~~~~~i~q~~~dg~~~vv 348 (373)
T d1qo0a_ 301 ---------------------RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVR 348 (373)
T ss_dssp ---------------------CHHHHHHHHSSCCEEETTEEEEECTTTSBEEBCCEEEEECTTSCEEEE
T ss_pred ---------------------CHHHHHHHHhcCceeCCceeEEEcCCCCcccCceEEEEEccCCcEEEE
Confidence 589999999999999999999999876555666667777655543444
No 6
>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=99.93 E-value=7.3e-25 Score=217.30 Aligned_cols=308 Identities=10% Similarity=0.045 Sum_probs=225.6
Q ss_pred EEEEEeecCCCC---chhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHH
Q 006931 28 NVGAIFSFGTVN---GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (625)
Q Consensus 28 ~IG~i~~~~~~~---g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~ 104 (625)
|||+++|++... |...+.|+++|++ +++++++++|+++++..+ ....+..++|.+||||.+|..+
T Consensus 2 kIG~~lPlSG~~a~~G~~~~~g~~lA~~----------~~~i~l~~~D~~~~~~~a--a~~~l~~~~v~~iiGp~~s~~~ 69 (317)
T d3ckma1 2 QIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQD--IIAQAKQAGIKTLVGPLLKQNL 69 (317)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHH--HHHHHHHTTCCEEECCCSHHHH
T ss_pred cEEEEeCCCCccHHHHHHHHHHHHHhcC----------CCCceEEEEcCCCCHHHH--HHHHHHHcCCeEEEEcccccch
Confidence 699999998544 7888999999974 456889999999998665 3345667799999999999877
Q ss_pred HHHHH-hhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHH
Q 006931 105 HVLSH-LANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (625)
Q Consensus 105 ~~va~-~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l 183 (625)
.+++. ..+...+|+++.++++. ....+++||+.+++..++.++++++.+.+|++|++++.|+.||....+.+.+.+
T Consensus 70 ~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~la~~~~~~g~k~vail~~~~~~g~~~~~~~~~~~ 146 (317)
T d3ckma1 70 DVILADPAQIQGMDVLALNATPN---SRAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (317)
T ss_dssp HHHHHCGGGGTTCEEEESCCCTT---CCCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCceEEecccccc---cccccceEEeccCCHHHHHHHHhhhhhcccceeEEeccccccchhHHHHHHHHH
Confidence 77554 55666777776433332 134688999999999999999999999999999999999999999999999999
Q ss_pred hccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCcchh-cccC
Q 006931 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST-FIDS 262 (625)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~~~~-~~~~ 262 (625)
++.|++|...+.++.. ..+ ......+..+++++++...+.++..+++++...++.. -++..+.... ....
T Consensus 147 ~~~G~~v~~~~~~~~~----~~~--~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~ 217 (317)
T d3ckma1 147 QQLAGTDANIRYYNLP----ADV--TYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNL---AIYASSRASASATNT 217 (317)
T ss_dssp HHHHSSCCEEEEESST----THH--HHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTC---EEEECGGGCCHHHHT
T ss_pred HHcCCEEEEEEecccc----chh--hhhhhhcccCcceEEEecChhHHHHHHHHHHHhcccc---ceeeccccccCcccc
Confidence 9999999988888654 333 3345567788999999999999999999988877543 3444332211 1111
Q ss_pred CCCCChhhhhcccceEEEeee---CCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCcccccC
Q 006931 263 KSPLSLKTAKSILGALTLRQH---TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (625)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~ 339 (625)
.........|++..... .+..+.+.+|.+.++..++ ...+.+.+|||+.+++++. ++
T Consensus 218 ----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~gyDa~~l~~~~~-~~----------- 277 (317)
T d3ckma1 218 ----NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ----LMRLYAMGADAWLLINQFN-EL----------- 277 (317)
T ss_dssp ----CHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH----HHHHHHHHHHHHHHHHTHH-HH-----------
T ss_pred ----chhhhhhhcCcEEecccccCCCCCHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHHHHH-HH-----------
Confidence 02344556776655432 3456667777777665543 2235677999988876533 22
Q ss_pred CCccCCCCCCccccCcccccCchHHHHHHHHhcccccceeeEEEccCCCccCCcEEEEEEeeCceeEEE
Q 006931 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQI 408 (625)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~G~r~~~~~~I~~~~~~~~~~~v 408 (625)
+.+++..|+|++|.++||++|+ ....+.+.+++++.+ ++|
T Consensus 278 ---------------------------~~~~~~~~~G~tG~~~fd~~G~-~~r~~~~~~~~~G~~-vp~ 317 (317)
T d3ckma1 278 ---------------------------RQVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAI-VPV 317 (317)
T ss_dssp ---------------------------HHSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEE-EEC
T ss_pred ---------------------------hccCCCCeecCeEEEEECCCCC-EeecceEEEEECCEE-eEC
Confidence 1123346899999999999997 466778888776544 653
No 7
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]}
Probab=99.71 E-value=2.7e-18 Score=165.36 Aligned_cols=102 Identities=25% Similarity=0.452 Sum_probs=88.1
Q ss_pred cceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCC----CCCCHHHHHHHHHcCcccEEEeeeeeecccccceEecccccc
Q 006931 484 TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH----KNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIE 559 (625)
Q Consensus 484 ~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~vdfs~p~~~ 559 (625)
..+++||||||+++||+++|++ |+++.+.++. .+++|++++++|.+|++|++++++++|++|++.+|||.||+.
T Consensus 50 ~~~~~G~~iDl~~~ia~~lg~~--~e~~~v~~~~~g~~~~~~w~~~l~~l~~g~~Di~i~~~tit~eR~~~v~Fs~Py~~ 127 (277)
T d2a5sa1 50 KKCCKGFCIDILKKLSRTVKFT--YDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVE 127 (277)
T ss_dssp EEEEESHHHHHHHHHHHHHTCC--EEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEE
T ss_pred ccceeeeHHHHHHHHHHHhCCC--EEEEEccCCCcCccCCCCHHHHHhhhhcccEEEEEEccEeehhhhhhhcccCCcee
Confidence 4578999999999999999999 5555544332 678899999999999999999999999999999999999999
Q ss_pred cceEEEEecCCCCcCcchhccCccHHHH
Q 006931 560 SGLVVVAPVRKLNSSAWAFLRPFTPLMW 587 (625)
Q Consensus 560 ~~~~~lv~~~~~~~~~~~~l~pf~~~vW 587 (625)
++++++++++....+.+.+++|++..+|
T Consensus 128 ~~~~ilv~k~~~~~~~~~~~~~~~~~~~ 155 (277)
T d2a5sa1 128 TGISVMVSRQVTGLSDKKFQRPHDYSPP 155 (277)
T ss_dssp ECEEEEEETCCCSTTSHHHHSGGGSSSC
T ss_pred cceEEEEecCcccCChhHhcCccccchh
Confidence 9999999988866777788887765443
No 8
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.49 E-value=8.2e-15 Score=141.78 Aligned_cols=105 Identities=17% Similarity=0.392 Sum_probs=84.4
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCC----------CCCCHHHHHHHHH
Q 006931 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH----------KNPTYSELINQIT 530 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~ 530 (625)
++.+++++. ..++|+.+.+ .+++++||++||+++||++||++ |+++++.++. .+++|++++.+|.
T Consensus 37 ~~~~~~~~~--~~~pp~~~~~-~~~~~~G~~vDl~~~ia~~lg~~--~e~~~v~~~~~g~~~~~~~~~~~~w~~~~~~l~ 111 (289)
T d1pb7a_ 37 KKVICTGPN--DTSPGSPRHT-VPQCCYGFCIDLLIKLARTMNFT--YEVHLVADGKFGTQERVNNSNKKEWNGMMGELL 111 (289)
T ss_dssp CCEEEEEEC----------CE-EEEEEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCEEECTTSSCEEECHHHHHHH
T ss_pred CceEEeecc--CCCCCccccC-CCCceEEEhHHHHHHHHHHhCCc--EEEEEccccccccccccccccccChhHhhhhhh
Confidence 578888885 4556777665 46789999999999999999999 6665543321 4568999999999
Q ss_pred cCcccEEEeeeeeecccccceEecccccccceEEEEecCC
Q 006931 531 TGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 531 ~g~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~lv~~~~ 570 (625)
.|++|++++++++|++|++.++||.||+..+.++++++++
T Consensus 112 ~g~~Di~~~~~s~t~eR~~~~~Fs~Py~~~~~~l~vrk~~ 151 (289)
T d1pb7a_ 112 SGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT 151 (289)
T ss_dssp HTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC
T ss_pred hhheeEEeeccccCHHHHHhcccccccceeeeEEEEECCC
Confidence 9999999999999999999999999999999999999765
No 9
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]}
Probab=99.49 E-value=1.4e-14 Score=137.90 Aligned_cols=104 Identities=20% Similarity=0.487 Sum_probs=87.8
Q ss_pred ceEEEEecCCCCccccEEee------CCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCC------CCCCHHHHHHHH
Q 006931 462 RQLRIGVPNRVSYRDFVFKV------NGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQI 529 (625)
Q Consensus 462 ~~l~v~~~~~~~~~~~~~~~------~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~l 529 (625)
|+|+|++..+||| .+.. +++++++||+|||+++|++++|++ |++++..+.. ...+|++++..+
T Consensus 2 ~t~~v~t~~~pPf---~~~~~~~~~~~~~~k~~G~~idl~~~ia~~lg~~--~~~~~~~~~~~~~~~~~~~~w~~~~~~l 76 (260)
T d1mqia_ 2 KTVVVTTILESPY---VMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGEL 76 (260)
T ss_dssp CCEEEEECCBTTT---BEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred eEEEEEEcccCCc---eEEccCccccCCCCCeEEEHHHHHHHHHHHhCCC--eEEEecCCCccceeccccccHHHHHHhh
Confidence 6899999766664 4432 245789999999999999999999 6666643221 446799999999
Q ss_pred HcCcccEEEeeeeeecccccceEecccccccceEEEEecCC
Q 006931 530 TTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 530 ~~g~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~lv~~~~ 570 (625)
.+|++|++++++++|++|++.++||.||+.++.++++++.+
T Consensus 77 ~~G~~D~~~~~~t~T~eR~~~~~FS~Py~~~~~~~~~~~~~ 117 (260)
T d1mqia_ 77 VYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 117 (260)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC
T ss_pred hcCcHHHHHhhhcCcHHHHhhCcCCCCeEcccceeeecccc
Confidence 99999999999999999999999999999999999998866
No 10
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]}
Probab=99.37 E-value=2.2e-13 Score=128.06 Aligned_cols=105 Identities=22% Similarity=0.447 Sum_probs=86.4
Q ss_pred eEEEEecCCCCccccEEeeC------CcceeeeeeHHHHHHHHHHCCCCccEEEEeCC---CCCCCCCHHHHHHHHHcCc
Q 006931 463 QLRIGVPNRVSYRDFVFKVN------GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG---DGHKNPTYSELINQITTGV 533 (625)
Q Consensus 463 ~l~v~~~~~~~~~~~~~~~~------~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~g~ 533 (625)
||+|+|..+||| ++.++ ++++++||||||++++++++|+++++..++.. .....++|++++..+..|+
T Consensus 1 t~~v~t~~~~Py---~~~~~~~~~~~~n~~~~G~~iDl~~~ia~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 77 (246)
T d2f34a1 1 TLIVTTILEEPY---VMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHR 77 (246)
T ss_dssp EEEEEECCBTTT---BEECSCCSCCCGGGGEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTTS
T ss_pred CEEEEecccCCC---EEEccCCCccCCCCceEEeHHHHHHHHHHHhCCCeEEEeccccccccccccCchhhhhhhhhhcc
Confidence 588988765554 44321 46789999999999999999999444444422 2226678999999999999
Q ss_pred ccEEEeeeeeecccccceEecccccccceEEEEecCC
Q 006931 534 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 534 ~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~~lv~~~~ 570 (625)
+|++++++++|++|++.++||.||+..+..+++++..
T Consensus 78 ~D~~i~~~~~t~~R~~~~~fs~P~~~~~~~~~~~~~~ 114 (246)
T d2f34a1 78 ADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPI 114 (246)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETSC
T ss_pred ccEEEeccccchhhhhcccccCCchhhheeeeeeccc
Confidence 9999999999999999999999999999999998775
No 11
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]}
Probab=99.29 E-value=2.8e-12 Score=118.45 Aligned_cols=95 Identities=29% Similarity=0.529 Sum_probs=83.2
Q ss_pred EEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeee
Q 006931 464 LRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAI 543 (625)
Q Consensus 464 l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~ 543 (625)
|+|++. +.|+||.+.+ +++++|+++|+++++++++|++ +++++. .|+.++..|.+|++|++++++++
T Consensus 2 l~v~~~--~~~pP~~~~~--~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~~~~ 68 (223)
T d1wdna_ 2 LVVATD--TAFVPFEFKQ--GDLYVGFDVDLWAAIAKELKLD--YELKPM-------DFSGIIPALQTKNVDLALAGITI 68 (223)
T ss_dssp EEEEEE--SSBTTTBEEE--TTEEESHHHHHHHHHHHHHTCC--EEEEEE-------CGGGHHHHHHTTSSSEEEEEEEC
T ss_pred EEEEeC--CCCCCeEEcc--CCeEEEHHHHHHHHHHHHhCCc--EEEEec-------CHHHHHhhhhhccceeeeccccc
Confidence 678884 5688899887 3778999999999999999999 555552 29999999999999999999999
Q ss_pred ecccccceEecccccccceEEEEecCCC
Q 006931 544 VTNRTKAVDFTQPYIESGLVVVAPVRKL 571 (625)
Q Consensus 544 t~~R~~~vdfs~p~~~~~~~~lv~~~~~ 571 (625)
+++|.+.++||.||+..+..+++++...
T Consensus 69 ~~~r~~~~~~s~p~~~~~~~~~~~~~~~ 96 (223)
T d1wdna_ 69 TDERKKAIDFSDGYYKSGLLVMVKANNN 96 (223)
T ss_dssp CHHHHTTSEECSCCEEEEEEEEEETTCC
T ss_pred chhhhcceEecccEEEeeeEEEEECCCC
Confidence 9999999999999999999999987653
No 12
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}
Probab=99.24 E-value=6.6e-12 Score=116.13 Aligned_cols=99 Identities=25% Similarity=0.467 Sum_probs=82.3
Q ss_pred CceEEEEecCCCCccccEEeeC-CcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 006931 461 GRQLRIGVPNRVSYRDFVFKVN-GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~-~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 539 (625)
.++||||+..+| ||.+.++ .++.++|+++||++++++++|++ ++++.. .+|+.++.++.+|++|++++
T Consensus 3 a~~lrVg~~~~p---P~~~~~~~~~g~~~G~~~dl~~~ia~~~g~~--~~~v~~------~~~~~~~~~l~~G~~D~~~~ 71 (226)
T d1ii5a_ 3 AMALKVGVVGNP---PFVFYGEGKNAAFTGISLDVWRAVAESQKWN--SEYVRQ------NSISAGITAVAEGELDILIG 71 (226)
T ss_dssp SCCEEEEECCCT---TTCEEC-----CEESHHHHHHHHHHHHHTCC--EEEEEC------SCHHHHHHHHHTTSCSEEEE
T ss_pred CCCEEEEEeCCC---CCeEeecCCCCcEEEHHHHHHHHHHHHhCCC--eEEEEc------CCHHHHHHHHhcCCcccccc
Confidence 478999996554 5666553 35789999999999999999999 776654 45999999999999999999
Q ss_pred eeeeecccc--cceEecccccccceEEEEecCC
Q 006931 540 DIAIVTNRT--KAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 540 ~~~~t~~R~--~~vdfs~p~~~~~~~~lv~~~~ 570 (625)
++++|++|. ..++||.||+.+...+++++..
T Consensus 72 ~~~~t~~r~~~~~~~fs~p~~~~~~~~~~~~~~ 104 (226)
T d1ii5a_ 72 PISVTPERAAIEGITFTQPYFSSGIGLLIPGTA 104 (226)
T ss_dssp EEECCHHHHTSTTEEECCCCEEEEEEEEEEGGG
T ss_pred cccchhhhhhhhcccccccccccCcceEEEecc
Confidence 999999997 5699999999999999987765
No 13
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}
Probab=99.22 E-value=6.1e-12 Score=117.39 Aligned_cols=98 Identities=17% Similarity=0.315 Sum_probs=86.6
Q ss_pred ceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeee
Q 006931 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 541 (625)
Q Consensus 462 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~ 541 (625)
++||||+. +.|+||.+.+ ++++++|+++||++++++++|++ +++++. .|...+..+.+|++|++++++
T Consensus 4 ~tl~v~~~--~~~pP~~~~d-~~G~~~G~~~dl~~~ia~~lg~~--~~~~~~-------~~~~~~~~l~~g~~d~~~~~~ 71 (238)
T d1lsta_ 4 QTVRIGTD--TTYAPFSSKD-AKGEFIGFDIDLGNEMCKRMQVK--CTWVAS-------DFDALIPSLKAKKIDAIISSL 71 (238)
T ss_dssp SEEEEEEC--SCBTTTBEEC-TTCCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHTTSCSEECSSC
T ss_pred CEEEEEEC--CCCCCeeEEC-CCCCEEEhHHHHHHHHHHHhCCc--eEEeec-------hHHHHHHHHHhcccceeeccc
Confidence 68999994 5688898876 46789999999999999999999 555553 399999999999999999999
Q ss_pred eeecccccceEecccccccceEEEEecCCC
Q 006931 542 AIVTNRTKAVDFTQPYIESGLVVVAPVRKL 571 (625)
Q Consensus 542 ~~t~~R~~~vdfs~p~~~~~~~~lv~~~~~ 571 (625)
+.+++|.+.++||.||......+++++...
T Consensus 72 ~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~ 101 (238)
T d1lsta_ 72 SITDKRQQEIAFSDKLYAADSRLIAAKGSP 101 (238)
T ss_dssp BCCHHHHHHCEECSCSBCCCEEEEEETTCC
T ss_pred chhhhhhhhcccCCCccccCceEEEEecCc
Confidence 999999999999999999999999987663
No 14
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}
Probab=99.13 E-value=4.4e-11 Score=112.02 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=86.4
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCC-CccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 006931 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPY-AVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 539 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 539 (625)
.++|+||+. +.|+||.+.+ .+++++||++||+++++++|+. .+++++++. +|..++..+.+|++|++++
T Consensus 10 ~g~l~v~v~--~~~pP~~~~~-~~g~~~G~~~Dl~~~ia~~l~~~~~~i~~~~~-------~~~~~~~~l~~g~~d~~~~ 79 (248)
T d1xt8a1 10 NGVVRIGVF--GDKPPFGYVD-EKGNNQGYDIALAKRIAKELFGDENKVQFVLV-------EAANRVEFLKSNKVDIILA 79 (248)
T ss_dssp HSSEEEEEC--SEETTTEEEC-TTSCEESHHHHHHHHHHHHHHSCTTCEEEEEC-------CGGGHHHHHHTTSCSEECS
T ss_pred CCEEEEEEc--CCCCCceEEC-CCCCEeEHHHHHHHHHHHHhcCCCceeeeeee-------cccccccccccCccccccc
Confidence 467999985 5688898876 4678999999999999999832 244777774 3999999999999999999
Q ss_pred eeeeecccccceEecccccccceEEEEecCC
Q 006931 540 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 540 ~~~~t~~R~~~vdfs~p~~~~~~~~lv~~~~ 570 (625)
++++|++|.+.++||.||+..+..+++++.+
T Consensus 80 ~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~ 110 (248)
T d1xt8a1 80 NFTQTPQRAEQVDFCSPYMKVALGVAVPKDS 110 (248)
T ss_dssp SCBCCHHHHTTEEECCCCEEEEEEEEEETTC
T ss_pred ccccchhhhcceeecccccccceeEEEecCc
Confidence 9999999999999999999999999998765
No 15
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=97.97 E-value=0.00017 Score=66.97 Aligned_cols=204 Identities=8% Similarity=-0.054 Sum_probs=121.9
Q ss_pred EEEEEEeecCCC-CchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEcCCChHHH
Q 006931 27 LNVGAIFSFGTV-NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (625)
Q Consensus 27 i~IG~i~~~~~~-~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~-~~~~~a~~~~~~l~~~~v~aviG~~~s~~~ 104 (625)
+.||++.|.-+. .-.+...+++-+.++ .|+++.+ .++. +++..-.+....++++++.++|=.......
T Consensus 1 ~~igv~~~~l~~~~~~~i~~~i~~~a~~--------~Gy~v~v--~~~~~~~~~~~~~~l~~l~~~~vdgiIl~~~~~~~ 70 (271)
T d1jyea_ 1 LLIGVATSSLALHAPSQIVAAILSRADQ--------LGASVVV--SMVERSGVEACKTAVHNLLAQRVSGLIINYPLDDQ 70 (271)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECCSSSHHHHHHHHHHHHTTTCSCEEEESCCCHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCEEEE--EECCCCCHHHHHHHHHHHHhcCCCEEEeccccCch
Confidence 469999996432 222345555555555 2677743 3333 344444555667788888877632222223
Q ss_pred HHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHHHH
Q 006931 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDK 182 (625)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l~~~ 182 (625)
......+...++|+|..... + +..+++ ...+...-+..+++.|...|-++|++|..+.. ......+.+.+.
T Consensus 71 ~~~~~~~~~~~iPvV~~d~~-~---~~~~~~---V~~D~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~ 143 (271)
T d1jyea_ 71 DAIAVEAACTNVPALFLDVS-D---QTPINS---IIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKY 143 (271)
T ss_dssp HHHHHHHHTTTSCEEESSSC-T---TSSSCE---EEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCeeeeecc-c---cccCCc---cccchhhccccceeeeeccccccccccccccccchHHhhhHHHHHH
Confidence 44455667889999987432 1 222343 23455666777788888889999999985432 334557788889
Q ss_pred HhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCce-EEEEEcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006931 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEAR-VIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 183 l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~-vIvl~~~~~~~~~il~~a~~~gm~~~~~~~i 251 (625)
+++.+++.......+.. .......+.++.....+ ..|++.+...+..+++.+.+.|...++.+-|
T Consensus 144 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ai~~~~~~~a~~~~~~l~~~g~~vp~di~I 209 (271)
T d1jyea_ 144 LTRNQIQPIAEREGDWS----AMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISV 209 (271)
T ss_dssp HHHTTCCCSEEEECCSS----HHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEE
T ss_pred hhhccccccceeccccc----cccccchhhhhhhcccccchhhccchhhhhHHHHhHHHhhccCCceEEE
Confidence 99888876554433322 33333344443333322 3455566667778999999998765443333
No 16
>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}
Probab=97.89 E-value=0.00085 Score=63.01 Aligned_cols=208 Identities=8% Similarity=0.000 Sum_probs=129.4
Q ss_pred eEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCChHHH
Q 006931 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAVMA 104 (625)
Q Consensus 26 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~avi-G~~~s~~~ 104 (625)
++|||+++|.-+. ....++..++++.-+.. .|.+ +.+.|+..++..-.+...+++++++.++| .|......
T Consensus 1 ~~kIgv~~~~~~~---~f~~~i~~gi~~~a~~~---~~~~--l~~~~~~~~~~~q~~~i~~li~~~vDgiii~~~~~~~~ 72 (305)
T d2fvya1 1 DTRIGVTIYKYDD---NFMSVVRKAIEQDAKAA---PDVQ--LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 72 (305)
T ss_dssp CEEEEEEESCTTS---HHHHHHHHHHHHHHHTC---TTEE--EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred CcEEEEEeCCCCC---HHHHHHHHHHHHHHHHc---CCcE--EEEEcCCCCHHHHHHHHHHHHHcCCCEEEeeccccccc
Confidence 5899999987432 45555656665543332 2444 45678888999989999999999998865 66777777
Q ss_pred HHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHc------------CCcEEEEEEecCCC-
Q 006931 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF------------GWGEVIAIFNDDDQ- 171 (625)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~------------~W~~v~ii~~d~~~- 171 (625)
.....-+...++|++.+....+......++.......+....+...++.+.+. |-++++++..+...
T Consensus 73 ~~~~~~~~~~~ipvv~~~~~~~~~~~~~~~~~~~V~~dn~~~g~~~~~~l~~~~~~~~~~~~~~~g~~~i~~i~g~~~~~ 152 (305)
T d2fvya1 73 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 152 (305)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHhcCCceeeeeecccccccccCCCceEEEeCcHHHHHHHHHHHHHHhhhccccccccCCCceEEEEeCCCccc
Confidence 77777788999999986433221111234455555566666666666665432 56789888865433
Q ss_pred -CcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc--CCceE-EEEEcchhhHHHHHHHHHHcCC
Q 006931 172 -GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARV-IVVHGYSRTGLMVFDVAQRLGM 243 (625)
Q Consensus 172 -g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~v-Ivl~~~~~~~~~il~~a~~~gm 243 (625)
.....+.+.+.+++.|++.......... ............+.. ...+. .+++.+...+..+++++.+.|.
T Consensus 153 ~~~~r~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~g~~~a~~~~g~ 226 (305)
T d2fvya1 153 DAEARTTYVIKELNDKGIKTEQLQLDTAM--WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK 226 (305)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECT--TCHHHHHHHHHHHHTSTTGGGCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHhhhcCCcccceeEeecc--ccchhhHHHHHHHHhhccCCCceEEEecchHHhHHHHHHHHHhCC
Confidence 2345678888898888866544333222 123333333332221 22232 4556666778888888888874
No 17
>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}
Probab=97.81 E-value=0.00071 Score=64.86 Aligned_cols=211 Identities=7% Similarity=-0.008 Sum_probs=131.9
Q ss_pred CCCceEEEEEEeecC--CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cC
Q 006931 22 LKPEVLNVGAIFSFG--TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GP 98 (625)
Q Consensus 22 ~~~~~i~IG~i~~~~--~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~avi-G~ 98 (625)
...++++||+++|.. +.+-.....+++.++++.+. ++.+.....++..++..-.+....++.+++.+|| .|
T Consensus 36 ~~~k~~~I~vi~p~~~~~~f~~~~~~~~~~~~~~~g~------~~~i~~~~~~s~~d~~~q~~~i~~~i~~~vDgIIi~~ 109 (338)
T d1jx6a_ 36 PTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNI------NYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTL 109 (338)
T ss_dssp CCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTC------CEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred ccCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHcCC------cEEEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 346789999999964 22223446667666666431 3556666778888888877788888999998766 45
Q ss_pred CChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCC--cEEEEEEecCCC-Ccch
Q 006931 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGW--GEVIAIFNDDDQ-GRNG 175 (625)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W--~~v~ii~~d~~~-g~~~ 175 (625)
..+.....+..++...++|++......+......++.+..........+..+++.|...+. .+++++.....+ ....
T Consensus 110 ~~~~~~~~i~~~~~~~~ipvv~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~i~~i~~~~~~~~~~R 189 (338)
T d1jx6a_ 110 DTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVR 189 (338)
T ss_dssp SSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHH
T ss_pred CcccchHHHHHHHHhCCCeEEEEccCCcccccccCCCceEEecCHHHHHHHHHHHHHHhCCCCeEEEEEecccccccHHH
Confidence 5566777888999999999997644433222122333333456666777888888877664 567777654332 2345
Q ss_pred HHHHHHHHhccc-eEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCC
Q 006931 176 VTALGDKLAEIR-CKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGM 243 (625)
Q Consensus 176 ~~~l~~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~gm 243 (625)
.+.|.+.+++.+ +.+.... ... .+.+.-...++.+... .+++|+ +++...+..+++++++.|.
T Consensus 190 ~~gf~~~l~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~ 255 (338)
T d1jx6a_ 190 GDTFIHQVNRDNNFELQSAY--YTK--ATKQSGYDAAKASLAKHPDVDFIY-ACSTDVALGAVDALAELGR 255 (338)
T ss_dssp HHHHHHHHHHHHCCEEEEEE--CCC--SSHHHHHHHHHHHHHHCCCCSEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhcccccceee--ccc--chHHHHHHHHHHHhhhcccccccc-cccchhHhhhhhhhhhhhc
Confidence 677888887765 3443322 211 2234444455554433 345444 4445557778888888885
No 18
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=97.62 E-value=0.0023 Score=59.14 Aligned_cols=207 Identities=11% Similarity=0.004 Sum_probs=121.1
Q ss_pred EEEEEeecCC-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCChHHHH
Q 006931 28 NVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAVMAH 105 (625)
Q Consensus 28 ~IG~i~~~~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~avi-G~~~s~~~~ 105 (625)
+||+++|.-. .+-.....+++-+..+- |+.+ .+.++..++....+....+..+++.++| .+..... .
T Consensus 2 tIg~i~~~~~~pf~~~~~~gi~~~~~~~--------gy~~--~~~~~~~d~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~ 70 (282)
T d1dbqa_ 2 SIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTL--ILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-P 70 (282)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCH-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEE--EEEeCCCCHHHHHHHHHHHHhcCCCEEeeecccccc-h
Confidence 6999999743 23234455555555442 4555 4566777777766777777788888855 3333222 2
Q ss_pred HHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHHHHH
Q 006931 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKL 183 (625)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~--~g~~~~~~l~~~l 183 (625)
.........++|++......+. ..++. -..++....+..+.+.+...|-++++++..... ........+...+
T Consensus 71 ~~~~~~~~~~iPvV~~~~~~~~---~~~~~--~v~~d~~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~~~~~~~~~~ 145 (282)
T d1dbqa_ 71 LLAMLEEYRHIPMVVMDWGEAK---ADFTD--AVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAM 145 (282)
T ss_dssp HHHHHHHTTTSCEEEEECSSCC---SSSCE--EEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHHHHH
T ss_pred hhhhHHhhcCCCceEEEecccc---cccce--EEEecccchhhhhhhhhccccccccccccCCcchhhhhhhhhhHHHHH
Confidence 2333445578999987544322 11222 233445566777888889999999999976432 2345566666777
Q ss_pred hccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceE-EEEEcchhhHHHHHHHHHHcCCCCCCeEEEe
Q 006931 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARV-IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (625)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~v-Ivl~~~~~~~~~il~~a~~~gm~~~~~~~i~ 252 (625)
++.+............ ..........+++.+...+. .+++.+...+..+++.+.++|+..++-+-|.
T Consensus 146 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~v~ 213 (282)
T d1dbqa_ 146 EEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLI 213 (282)
T ss_dssp HHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEESCHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred hhcCCCccceEEEecc--cchhhHHHHHHHHHhCCCCCceEEEecchhhhhHHHHHHhccCCCCceEEEE
Confidence 7766554333223222 23444445556654444332 3444566678888999999997665544443
No 19
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}
Probab=97.60 E-value=0.0043 Score=58.04 Aligned_cols=217 Identities=10% Similarity=0.022 Sum_probs=119.7
Q ss_pred eEEEEEEeecCC-CCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCChHH
Q 006931 26 VLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAVM 103 (625)
Q Consensus 26 ~i~IG~i~~~~~-~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~avi-G~~~s~~ 103 (625)
+++||++.+... .+-.....+++.|.++. |+++-+ .+ ..++..-.+....++.+++.+|| .|.....
T Consensus 1 ~~kIg~v~~~~~~p~~~~~~~g~~~aa~~~--------G~~~i~--~~-~~d~~~q~~~i~~li~~~vDgiIi~~~~~~~ 69 (305)
T d8abpa_ 1 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEVIK--IA-VPDGEKTLNAIDSLAASGAKGFVICTPDPKL 69 (305)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEEEE--EE-CCSHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEEE--Ec-CCCHHHHHHHHHHHHHcCCCEEEEccccccc
Confidence 589999999864 22334456666666664 566532 22 34677777788888889998876 4555556
Q ss_pred HHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHH----HHHcCC---cEEEEEEecCCCC--cc
Q 006931 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM----VSYFGW---GEVIAIFNDDDQG--RN 174 (625)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~l----l~~~~W---~~v~ii~~d~~~g--~~ 174 (625)
...+...+...+||+|.+............+.+-.........+..+++. +.+.++ ....++....+.. ..
T Consensus 70 ~~~~~~~a~~~giPVV~~d~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 149 (305)
T d8abpa_ 70 GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 149 (305)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHH
T ss_pred cHHHHHHHHhcCCCEEEEcCccccccccccCccceeeehHHHHHHHHHHHHHHHhccccccccceEEEEcCCCCCcHHHH
Confidence 66777888899999998743221111111222222333344444444444 333333 3444455443332 34
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCC--ceEEEE-EcchhhHHHHHHHHHHcCCCCCCeEEE
Q 006931 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVV-HGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~vIvl-~~~~~~~~~il~~a~~~gm~~~~~~~i 251 (625)
..+.+.+.+++.+............ ..+...-....+.+.... .+.+++ +.+...+..+++++++.|+..+...-+
T Consensus 150 R~~g~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~a~g~~~Al~~~G~~~~~i~~v 228 (305)
T d8abpa_ 150 RTTGSMDALKAAGFPEKQIYQVPTK-SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 228 (305)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEECS-SSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred HHHHHHHHHHHhhccccccceeccC-CcchhhhHHHHHhhhccCCCcccccccccchHHHHHHHHHHHHhhccCCCceEE
Confidence 4567788887766432111111111 012334444555544433 345444 445556778889999999865554444
Q ss_pred eeC
Q 006931 252 ATT 254 (625)
Q Consensus 252 ~~~ 254 (625)
..+
T Consensus 229 g~d 231 (305)
T d8abpa_ 229 GIN 231 (305)
T ss_dssp EES
T ss_pred Eec
Confidence 444
No 20
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=97.44 E-value=0.0024 Score=58.84 Aligned_cols=208 Identities=12% Similarity=0.020 Sum_probs=122.2
Q ss_pred eEEEEEEeec-CCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHH
Q 006931 26 VLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (625)
Q Consensus 26 ~i~IG~i~~~-~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~ 104 (625)
+=+||+++|. +..+-.....+++-+.++ . |+++. +.++..++..-.+....++..++.++|-.......
T Consensus 3 t~tIgvvvp~l~~~f~~~~~~gi~~~~~~---~-----g~~~~--~~~~~~~~~~e~~~i~~~~~~~vdgii~~~~~~~~ 72 (275)
T d2nzug1 3 TTTVGVIIPDISNIFYAELARGIEDIATM---Y-----KYNII--LSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE 72 (275)
T ss_dssp CSEEEEEESCTTSHHHHHHHHHHHHHHHH---T-----TCEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEECCSCCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHH---c-----CCEEE--EEECCCCHHHHHHHHHHHHhcCCceeeccccchhh
Confidence 3469999985 222112233444443333 2 55554 56666677666666777778888887743222222
Q ss_pred HHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCC---CcchHHHHHH
Q 006931 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ---GRNGVTALGD 181 (625)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~---g~~~~~~l~~ 181 (625)
.....+...++|++......+ ...++ ...+++...+..+++.+...|-++++++..+... .......+..
T Consensus 73 -~~~~~l~~~~~pvv~~~~~~~---~~~~~---~V~~d~~~~~~~~~~~l~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~ 145 (275)
T d2nzug1 73 -EHVEELKKSPVPVVLAASIES---TNQIP---SVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKR 145 (275)
T ss_dssp -HHHHHHHHCSSCEEEESCCCT---TCCSC---EEEECHHHHHHHHHHHHHHTTCSCEEEEESCTTSHHHHTTHHHHHHH
T ss_pred -HHHHHHhhccccccccccccc---ccccc---ccccccccchhHHHHHHHHhcccceEEEecCcccchhhhHHHHHHHH
Confidence 223456778999887643322 12222 2445666677878888988999999999854322 2244556677
Q ss_pred HHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCCeEEEee
Q 006931 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (625)
Q Consensus 182 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~gm~~~~~~~i~~ 253 (625)
..++.|+++......... .+...-...++++... .++. |++++...+..+++++.+.|+..+.-+.+.+
T Consensus 146 ~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a-i~~~~d~~A~g~~~~l~~~g~~ip~di~vig 216 (275)
T d2nzug1 146 ALTESGLPVRDSYIVEGD--YTYDSGIEAVEKLLEEDEKPTA-IFVGTDEMALGVIHGAQDRGLNVPNDLEIIG 216 (275)
T ss_dssp HHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSSSCCSE-EEESSHHHHHHHHHHHHTTTCCTTTTCEEEE
T ss_pred HHHHcCCCCCcceEEecc--CCHHHHHHHHHHHHhcCCCCeE-EEecChHHHHHHHHHHhhcCCCCCccceeee
Confidence 777778765422212111 2244445566665543 3344 4455566778899999999987655455543
No 21
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}
Probab=97.29 E-value=0.009 Score=54.50 Aligned_cols=195 Identities=11% Similarity=0.089 Sum_probs=116.9
Q ss_pred EEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChHHHH
Q 006931 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (625)
Q Consensus 28 ~IG~i~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG-~~~s~~~~ 105 (625)
+||++.|.- ..+-.....+++-+.++. |+++ .+.++..++..-.+...+++.+++.+++- |.......
T Consensus 3 tIgvvvp~~~~~f~~~~~~gi~~~a~~~--------g~~~--~i~~~~~~~~~~~~~i~~~~~~~~d~ii~~~~~~~~~~ 72 (271)
T d2dria_ 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNL--VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEE--EEEeCCCCHHHHHHHHHHHHhcCCcccccccccccchH
Confidence 499999963 222223455555555552 4555 45677788888888888888899988864 44444444
Q ss_pred HHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCC--cEEEEEEecCCC--CcchHHHHHH
Q 006931 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGW--GEVIAIFNDDDQ--GRNGVTALGD 181 (625)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W--~~v~ii~~d~~~--g~~~~~~l~~ 181 (625)
.....+...+||+|......+. .+..-...+.+...+..+++.|.+.+- .+++++...... .......+++
T Consensus 73 ~~~~~~~~~~ipvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 147 (271)
T d2dria_ 73 NAVKMANQANIPVITLDRQATK-----GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCSS-----SCCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhcceeEEEecccccc-----cccceEEeecchhhHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHhHHH
Confidence 5556677889999987532211 122233445566667777877766433 377777754332 3344566777
Q ss_pred HHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcC
Q 006931 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLG 242 (625)
Q Consensus 182 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g 242 (625)
.++..+............ ..........+.. ..++. |++.+...+..+++++.+.|
T Consensus 148 ~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a-i~~~~d~~a~g~~~al~~~g 205 (271)
T d2dria_ 148 AVAAHKFNVLASQPADFD----RIKGLNVMQNLLTAHPDVQA-VFAQNDEMALGALRALQTAG 205 (271)
T ss_dssp HHHHHTCEEEEEEECTTC----HHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHHT
T ss_pred Hhhcccccccceeeecch----hhhhhhhHHHHHhcccCceE-EecccHHHHHHHHHHHHHhC
Confidence 777777665544433322 3333333333333 23444 44555567788888888877
No 22
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=97.15 E-value=0.0065 Score=55.13 Aligned_cols=190 Identities=12% Similarity=0.022 Sum_probs=120.1
Q ss_pred EEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCChHHHH
Q 006931 27 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (625)
Q Consensus 27 i~IG~i~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG~~~s~~~~ 105 (625)
-.||+++|.. ...-.....++.-++++- |+.+ .+.++..++..-.+....+.++++.++|=...+...
T Consensus 3 k~Igvi~p~~~~~~~~~~~~~i~~~~~~~--------Gy~~--~~~~s~~d~~~~~~~i~~l~~~~vdgiIi~~~~~~~- 71 (255)
T d1byka_ 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQ--------GYDP--IMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGIT- 71 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCC-
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEE--EEEeCCCCHHHHHHHHHHHHhccccceeeccccchH-
Confidence 3799999964 222223445555555553 4555 456777787777777777777888877742222221
Q ss_pred HHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecC---CCCcchHHHHHHH
Q 006931 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD---DQGRNGVTALGDK 182 (625)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~---~~g~~~~~~l~~~ 182 (625)
..+....++|++..+... ..++ ...++....++.+++.|...|-++++++.... .......+.+.+.
T Consensus 72 --~~~~~~~~~p~v~i~~~~-----~~~~---~v~~D~~~~g~~~~~~L~~~g~~~i~~i~~~~~~~~~~~~r~~g~~~~ 141 (255)
T d1byka_ 72 --EEMLAHWQSSLVLLARDA-----KGFA---SVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAF 141 (255)
T ss_dssp --TTTSGGGSSSEEEESSCC-----SSCE---EEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHH
T ss_pred --HHHHHHcCCCEEEeccCC-----CCCC---EEEeCcHHHHHHHHHHHHHhccccccccCCCcccccHHHHHhhHHHHH
Confidence 356677889988764322 1233 34566777788888999999999999996432 2223457889999
Q ss_pred HhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCC
Q 006931 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 243 (625)
Q Consensus 183 l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~gm 243 (625)
+++.|+..... ... .+..+-...++++...+++.|+ +.+...+..+++.+.+.|.
T Consensus 142 ~~~~~i~~~~~--~~~---~~~~~~~~~~~~~l~~~~~aii-~~~d~~A~g~~~~l~~~g~ 196 (255)
T d1byka_ 142 CKAHKLHPVAA--LPG---LAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQEQRI 196 (255)
T ss_dssp HHHTTCCCEEE--CCC---SCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCcccc--cCC---CCHHHHHHHHHHHhCCccceee-ccchhhHhhHHHHHHHhCc
Confidence 99988764322 221 1233334455555556677654 5666677788898888875
No 23
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}
Probab=97.02 E-value=0.032 Score=51.17 Aligned_cols=215 Identities=9% Similarity=-0.033 Sum_probs=124.7
Q ss_pred EEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCChHHHH
Q 006931 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (625)
Q Consensus 28 ~IG~i~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~aviG-~~~s~~~~ 105 (625)
+.+++.|.- ..+-.....+++-+.++. |+++.+...++..++..-.+...+++++++.+||- +..+....
T Consensus 3 ~~a~i~~~~~npff~~i~~g~~~~a~~~--------g~~~~i~~~~~~~d~~~q~~~i~~~i~~~~DgIi~~~~~~~~~~ 74 (288)
T d1guda_ 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV 74 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEEecCCcchhh
Confidence 356676653 333335567777777764 67788877788888888788888899999999864 45554444
Q ss_pred HHHHhhhcCCCcEEeeccCCCCC--CCCCCCceEEccCchHHHHHHHHHHHHHcC---CcEEEEEEecCCC--CcchHHH
Q 006931 106 VLSHLANELQVPLLSFTALDPTL--SPLQYPFFVQTAPNDLYLMSAIAEMVSYFG---WGEVIAIFNDDDQ--GRNGVTA 178 (625)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~l--s~~~~~~~~r~~ps~~~~~~al~~ll~~~~---W~~v~ii~~d~~~--g~~~~~~ 178 (625)
....-+...++|++.+...-... .....+...-........+...++.+.... -.++.++..+... .......
T Consensus 75 ~~l~~~~~~gipvv~~d~~~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~r~~~ 154 (288)
T d1guda_ 75 MPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNG 154 (288)
T ss_dssp HHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEeCCCCccccccccCCCeeeEEecCHHHHHHHHHHHHHHHhccCCceeeccCCCcccchhhHHHHh
Confidence 45566778899999864322110 001122223344455556666665554322 2467666643322 2233456
Q ss_pred HHHHHhcc-ceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceE-EEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeCc
Q 006931 179 LGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARV-IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255 (625)
Q Consensus 179 l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~v-Ivl~~~~~~~~~il~~a~~~gm~~~~~~~i~~~~ 255 (625)
+.+.+.+. +.++........ +.......++.+....+++ .|++++...+..+++++++.|+. .+...+..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~-~di~ivg~D~ 228 (288)
T d1guda_ 155 ATEAFKKASQIKLVASQPADW----DRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKT-GKVLVVGTDG 228 (288)
T ss_dssp HHHHHHTCTTEEEEEEEECTT----CHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCT-TTSEEEEESC
T ss_pred hhcccccccccccceeeeccc----hhhHHHHHHHHhhccCcccceeeccCCHHHHHHHHHHHHcCCC-CCeEEEecCC
Confidence 66666655 345543332322 2444455555554443332 34566667778889999999973 3455555443
No 24
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=95.87 E-value=0.48 Score=43.21 Aligned_cols=210 Identities=10% Similarity=-0.008 Sum_probs=110.6
Q ss_pred eEEEEEEeecC-CCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCChHH
Q 006931 26 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAVM 103 (625)
Q Consensus 26 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v~avi-G~~~s~~ 103 (625)
.-+||++.+.. ..+-.....+++.+.++. |+++.+. .++..++..-.+....++.+++.+|| .|..+..
T Consensus 3 ~~kI~~i~~~~~npf~~~~~~g~~~~a~~~--------G~~v~~~-~~~~~d~~~q~~~i~~~i~~~~dgIIi~~~~~~~ 73 (316)
T d1tjya_ 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKAL--------GIDVTYD-GPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDG 73 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHH--------TCEEEEC-CCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSST
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEEEE-ECCCCCHHHHHHHHHHHHhcCCCeeeecccccch
Confidence 46899998874 333345677777777774 5565431 23456777778888888999998776 4555555
Q ss_pred HHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHH-H--cCCcEEEEEEecCCCC--cchHHH
Q 006931 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-Y--FGWGEVIAIFNDDDQG--RNGVTA 178 (625)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~-~--~~W~~v~ii~~d~~~g--~~~~~~ 178 (625)
.......+...++|++.+....+. ... ..+.- ...+......+...+. + .+...+.++....... ......
T Consensus 74 ~~~~~~~a~~~gi~vv~~d~~~~~--~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (316)
T d1tjya_ 74 LCPALKRAMQRGVKILTWDSDTKP--ECR-SYYIN-QGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKE 149 (316)
T ss_dssp THHHHHHHHHTTCEEEEESSCCCG--GGC-SEEEE-SCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHH
T ss_pred hhhhhhhhhcccccceeccccccc--ccc-ccccc-cchhHHHHHHHHHHHHHhhcccccceeeecccccccchhhhhhH
Confidence 565666777889999987543321 111 12222 1222222333333332 2 3456666555432211 112223
Q ss_pred HHHHHhcc--ceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceE-EEEEcchhhHHHHHHHHHHcCCCCCCeEEEeeC
Q 006931 179 LGDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMMEARV-IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (625)
Q Consensus 179 l~~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~v-Ivl~~~~~~~~~il~~a~~~gm~~~~~~~i~~~ 254 (625)
+....... +..+.....-. .+.+.-...++.+.+..+++ .|++.+...+.-.++++++.|. .+...+..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~p~~~aI~~~nd~~a~ga~~al~~~g~--~~~~~vg~d 222 (316)
T d1tjya_ 150 AKAKISQEHPGWEIVTTQFGY----NDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR--NNLAIVGFS 222 (316)
T ss_dssp HHHHHHHHCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCSSCCEEEECSTTHHHHHHHHHHHTTC--CSCEEEEBC
T ss_pred HHHHHHhhcccccchhhccch----hhhHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHcCC--CCcEEEEEc
Confidence 33333333 33333322221 22444444555544444443 3334455566777778877763 334444443
No 25
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}
Probab=88.47 E-value=0.56 Score=44.78 Aligned_cols=80 Identities=13% Similarity=0.146 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCc-chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 006931 148 SAIAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (625)
Q Consensus 148 ~al~~ll~~~~W~~v~ii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 226 (625)
+-+.++++.+|.+++.+|+++..+.. ...+.+.+.+++.|+++.....+... ...++..+.++.++..++|.||-.+
T Consensus 23 ~~l~~~l~~~g~~rvliVt~~~~~~~~g~~~~l~~~L~~~gi~~~~f~~v~~~--pt~~~v~~~~~~~~~~~~D~IIavG 100 (398)
T d1vlja_ 23 PKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPN--PVLSKVHEAVEVAKKEKVEAVLGVG 100 (398)
T ss_dssp GGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHhcCCCeEEEEECCcHHHHhhHHHHHHHHHHhcCCeEEEEcCccCC--CCHHHHHHHhhhcccccCceEEecC
Confidence 44888999999999999987654433 35789999999999987654334433 4578888889999999999999887
Q ss_pred chh
Q 006931 227 YSR 229 (625)
Q Consensus 227 ~~~ 229 (625)
.+.
T Consensus 101 GGs 103 (398)
T d1vlja_ 101 GGS 103 (398)
T ss_dssp SHH
T ss_pred Ccc
Confidence 764
No 26
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}
Probab=86.57 E-value=0.48 Score=45.04 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 006931 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (625)
Q Consensus 147 ~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 226 (625)
...+.++++.+|.+++.|+++....-....+.+.+.+++.|+++..-..+... ...+++.+.++..++.++|+||-.+
T Consensus 18 l~~l~~~l~~~G~k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~--p~~~~v~~~~~~~~~~~~D~IiaiG 95 (385)
T d1rrma_ 18 VGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPN--PTITVVKEGLGVFQNSGADYLIAIG 95 (385)
T ss_dssp GGGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSS--CBHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEECcchhhCcHHHHHHHHHHHcCCeEEEEcCccCC--CCHHHHHHHhhhhhccCCCEEEecC
Confidence 35578889999999998887543222235688999999999987643345444 5678899999999999999999877
Q ss_pred chh--hHHHHHH
Q 006931 227 YSR--TGLMVFD 236 (625)
Q Consensus 227 ~~~--~~~~il~ 236 (625)
.++ ++.+.+.
T Consensus 96 GGS~iD~aK~ia 107 (385)
T d1rrma_ 96 GGSPQDTCKAIG 107 (385)
T ss_dssp SHHHHHHHHHHH
T ss_pred CCchhhHHHHHH
Confidence 663 3444443
No 27
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}
Probab=82.55 E-value=1.8 Score=40.31 Aligned_cols=85 Identities=9% Similarity=0.099 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCc-chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 006931 148 SAIAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (625)
Q Consensus 148 ~al~~ll~~~~W~~v~ii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 226 (625)
..+.++++.+| +++.+|+++..+.. ...+.+.+.+++.|+.+..-..+... .+.+++.+.++.+++.++|.||-.+
T Consensus 18 ~~l~~~~~~~g-~k~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavG 94 (359)
T d1o2da_ 18 EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEEN--PSFDNVMKAVERYRNDSFDFVVGLG 94 (359)
T ss_dssp HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSS--CBHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred HHHHHHHHHcC-CeEEEEEcCcHHHHhhHHHHHHHHHHHcCCeEEEEcCccCC--CCHHHHHHhhhhccccCCceEEecc
Confidence 34666778888 78888887655433 35789999999999887543344444 4578889999999999999998877
Q ss_pred chh--hHHHHH
Q 006931 227 YSR--TGLMVF 235 (625)
Q Consensus 227 ~~~--~~~~il 235 (625)
.+. ++.+++
T Consensus 95 GGs~iD~aK~i 105 (359)
T d1o2da_ 95 GGSPMDFAKAV 105 (359)
T ss_dssp SHHHHHHHHHH
T ss_pred cccchhHHHHH
Confidence 663 344444
No 28
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=71.09 E-value=17 Score=28.04 Aligned_cols=87 Identities=10% Similarity=0.045 Sum_probs=54.1
Q ss_pred cEEEEEEecCCCCc--chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch------hhH
Q 006931 160 GEVIAIFNDDDQGR--NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS------RTG 231 (625)
Q Consensus 160 ~~v~ii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~------~~~ 231 (625)
++|.|||.. .+|. ..++.+.+.+.+.|+.+......... .+++......+. +.+.|++.++. ...
T Consensus 4 ~kv~IiY~S-~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~--~~d~iiigspt~~~~~~~~~ 76 (148)
T d1vmea1 4 GKVTVIYDS-MYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE----RPAISEILKDIP--DSEALIFGVSTYEAEIHPLM 76 (148)
T ss_dssp TEEEEEEEC-SSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC----CCCHHHHHHHST--TCSEEEEEECEETTEECHHH
T ss_pred CEEEEEEEC-CCcHHHHHHHHHHHHHHhCCCeEEEEeccccc----ccchhHhhhhHH--HCCEeEEEecccCCccCchH
Confidence 578888853 3443 56788888888999887754433322 345555666664 45666665442 366
Q ss_pred HHHHHHHHHcCCCCCCeEEEee
Q 006931 232 LMVFDVAQRLGMMDSGYVWIAT 253 (625)
Q Consensus 232 ~~il~~a~~~gm~~~~~~~i~~ 253 (625)
..++....+..+.+.....+.+
T Consensus 77 ~~~l~~~~~~~~~~k~~~~fgs 98 (148)
T d1vmea1 77 RFTLLEIIDKANYEKPVLVFGV 98 (148)
T ss_dssp HHHHHHHHHHCCCCCEEEEEEE
T ss_pred HHHHHHHhhcccCCCEEEEEEc
Confidence 7777777776665544444444
No 29
>d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]}
Probab=69.21 E-value=9.7 Score=30.01 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=47.2
Q ss_pred EEEEEEecCCCCc---chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcch
Q 006931 161 EVIAIFNDDDQGR---NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYS 228 (625)
Q Consensus 161 ~v~ii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~~ 228 (625)
+++||.-.|..|. ..-..+.+.+++.|.++.....++.. .+.+...++++.+ ...++|+..+..
T Consensus 4 r~~vitvsd~~~~~~D~ngp~L~~~l~~~G~~v~~~~iv~D~----~~~i~~~l~~~~~~~~~DlIvTtGGt 71 (155)
T d1y5ea1 4 RCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD----KESIQQAVLAGYHKEDVDVVLTNGGT 71 (155)
T ss_dssp EEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS----HHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred EEEEEEEeCCCCCCcCccHHHHHHHHHhcCCEEEEeeeecch----HHHHHHHHHHHHhccCCCEEEEeeee
Confidence 5677775444444 45678889999999999887777754 7778888887765 578999987664
No 30
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=68.56 E-value=4.4 Score=35.60 Aligned_cols=64 Identities=6% Similarity=-0.099 Sum_probs=46.1
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006931 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
|.|++|..+ ++|....++.+.+.+++.|..+.... .. .+.......++.+...+.+.+|+....
T Consensus 1 ktIg~i~~~~~~pf~~~~~~gi~~~~~~~gy~~~~~~---~~--~d~~~~~~~~~~l~~~~vdgiIi~~~~ 66 (282)
T d1dbqa_ 1 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AW--NNLEKQRAYLSMMAQKRVDGLLVMCSE 66 (282)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe---CC--CCHHHHHHHHHHHHhcCCCEEeeeccc
Confidence 578999874 55666778899999999998775432 11 234556678888888889987776544
No 31
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=68.01 E-value=4.3 Score=37.67 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc
Q 006931 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (625)
Q Consensus 148 ~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 227 (625)
..+.+.++.+| +++.+|++...+ ....+.+.+.+++.|+.+... .++.. ....+.....+.+++.++|+||-.+.
T Consensus 20 ~~l~~~l~~~g-~r~lvvtd~~~~-~~~~~~l~~~L~~~~i~~~~~-~~~~~--p~~~~v~~~~~~~~~~~~D~IiavGG 94 (366)
T d1jq5a_ 20 TKIANYLEGIG-NKTVVIADEIVW-KIAGHTIVNELKKGNIAAEEV-VFSGE--ASRNEVERIANIARKAEAAIVIGVGG 94 (366)
T ss_dssp GGHHHHHTTTC-SEEEEEECHHHH-HHTHHHHHHHHHTTTCEEEEE-ECCSS--CBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHcC-CeEEEEECCcHH-HHHHHHHHHHHHHCCCeEEEE-EeCCC--CCHHHHHHHHHHhhccCCcEEEEecC
Confidence 45777888899 999888754332 223578888999988887543 35544 55777888888888899999998876
Q ss_pred hh
Q 006931 228 SR 229 (625)
Q Consensus 228 ~~ 229 (625)
+.
T Consensus 95 Gs 96 (366)
T d1jq5a_ 95 GK 96 (366)
T ss_dssp HH
T ss_pred Cc
Confidence 64
No 32
>d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]}
Probab=65.83 E-value=5.6 Score=33.94 Aligned_cols=84 Identities=12% Similarity=0.120 Sum_probs=57.5
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006931 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 540 (625)
.++|+||+.. .....+-.+++..+.+... +++++++. ++...++..|.+|++|++++.
T Consensus 5 ~G~LrIg~~~--------------~~~~~~LP~~l~~f~~~~P-~v~v~l~~-------~~~~~l~~~l~~g~~D~ai~~ 62 (237)
T d1al3a_ 5 KGSLYVATTH--------------TQARYALPGVIKGFIERYP-RVSLHMHQ-------GSPTQIAEAVSKGNADFAIAT 62 (237)
T ss_dssp EEEEEEEECH--------------HHHHHTSHHHHHHHHHHCT-EEEEEEEE-------CCHHHHHHHHHTTCCSEEEES
T ss_pred cEEEEEEeEH--------------HHHHHHHHHHHHHHHHHCC-CcEEEEEE-------CCHHHHHHHHhccCCcEEEEe
Confidence 4789999942 2234566788999988774 44466666 669999999999999999863
Q ss_pred eeeecccccceEecccccccceEEEEecC
Q 006931 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVR 569 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~lv~~~ 569 (625)
... .....+ ...|.....+.++++..
T Consensus 63 ~~~--~~~~~l-~~~~l~~~~~~~v~~~~ 88 (237)
T d1al3a_ 63 EAL--HLYDDL-VMLPCYHWNRSIVVTPE 88 (237)
T ss_dssp SCC--CTTSCE-EEEEEEEECEEEEECTT
T ss_pred ecc--cccccc-cccccccceEEEEEecC
Confidence 321 122222 33466777788887654
No 33
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=63.93 E-value=8.2 Score=33.68 Aligned_cols=78 Identities=4% Similarity=-0.077 Sum_probs=51.1
Q ss_pred EEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHH
Q 006931 162 VIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQ 239 (625)
Q Consensus 162 v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~ 239 (625)
|+++..+ +.+.....+.+.+.+++.|..+.... ... .+.......++++.+.+.+.||+.........+...+.
T Consensus 3 igv~~~~l~~~~~~~i~~~i~~~a~~~Gy~v~v~~--~~~--~~~~~~~~~l~~l~~~~vdgiIl~~~~~~~~~~~~~~~ 78 (271)
T d1jyea_ 3 IGVATSSLALHAPSQIVAAILSRADQLGASVVVSM--VER--SGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAA 78 (271)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE--CCS--SSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEE--CCC--CCHHHHHHHHHHHHhcCCCEEEeccccCchhHHHHHHH
Confidence 5677763 44555677888899999999875432 111 22455667788888888998887665555555666666
Q ss_pred HcCC
Q 006931 240 RLGM 243 (625)
Q Consensus 240 ~~gm 243 (625)
+.++
T Consensus 79 ~~~i 82 (271)
T d1jyea_ 79 CTNV 82 (271)
T ss_dssp TTTS
T ss_pred hcCC
Confidence 6553
No 34
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=63.24 E-value=5.1 Score=35.76 Aligned_cols=80 Identities=10% Similarity=0.008 Sum_probs=56.0
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc-chhhHHHHHH
Q 006931 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG-YSRTGLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~-~~~~~~~il~ 236 (625)
++|++|..+ +.|.....+.+++.+++.|+++... .+.. .+...-...++.+...+.+.||+.. ........++
T Consensus 4 ~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~v~~~--~~~~--~d~~~q~~~i~~~i~~~~dgIIi~~~~~~~~~~~~~ 79 (316)
T d1tjya_ 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYD--GPTE--PSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALK 79 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEEC--CCSS--CCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEE--ECCC--CCHHHHHHHHHHHHhcCCCeeeecccccchhhhhhh
Confidence 688888763 5567777889999999999887642 1222 2344456677777778899888764 4456677888
Q ss_pred HHHHcCC
Q 006931 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~gm 243 (625)
++.+.+.
T Consensus 80 ~a~~~gi 86 (316)
T d1tjya_ 80 RAMQRGV 86 (316)
T ss_dssp HHHHTTC
T ss_pred hhhcccc
Confidence 8887663
No 35
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}
Probab=62.83 E-value=7.6 Score=34.08 Aligned_cols=81 Identities=9% Similarity=0.016 Sum_probs=55.3
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 006931 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~ 236 (625)
.++++|..+ ++|.....+.+++.+++.|.++.....-. . .+...-...++++...+++.||+.... ......++
T Consensus 2 ~~~a~i~~~~~npff~~i~~g~~~~a~~~g~~~~i~~~~~-~--~d~~~q~~~i~~~i~~~~DgIi~~~~~~~~~~~~l~ 78 (288)
T d1guda_ 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-E--GDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVA 78 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSS-T--TCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC-C--CCHHHHHHHHHHHHhcCCCEEEEecCCcchhhHHHH
Confidence 367787764 46777888899999999998776532111 1 223444567788888899998886544 45556778
Q ss_pred HHHHcCC
Q 006931 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~gm 243 (625)
++.+.|.
T Consensus 79 ~~~~~gi 85 (288)
T d1guda_ 79 RAWKKGI 85 (288)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 8877664
No 36
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}
Probab=61.97 E-value=11 Score=33.24 Aligned_cols=77 Identities=8% Similarity=0.021 Sum_probs=56.4
Q ss_pred EEEEEEe--cCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc-hhhHHHHHHH
Q 006931 161 EVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDV 237 (625)
Q Consensus 161 ~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-~~~~~~il~~ 237 (625)
+|+++.. ++.|.....+.+++.+++.|+++.... . .+.+.-...++.+...+++.||+... ......++++
T Consensus 3 kIg~v~~~~~~p~~~~~~~g~~~aa~~~G~~~i~~~--~----~d~~~q~~~i~~li~~~vDgiIi~~~~~~~~~~~~~~ 76 (305)
T d8abpa_ 3 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA--V----PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAK 76 (305)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEE--C----CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEc--C----CCHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHH
Confidence 6777776 456667778888899999999876432 1 12455567778888889998888754 4557788999
Q ss_pred HHHcCC
Q 006931 238 AQRLGM 243 (625)
Q Consensus 238 a~~~gm 243 (625)
+.+.|+
T Consensus 77 a~~~gi 82 (305)
T d8abpa_ 77 ARGYDM 82 (305)
T ss_dssp HHHTTC
T ss_pred HHhcCC
Confidence 998875
No 37
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}
Probab=61.55 E-value=27 Score=28.26 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=82.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchH
Q 006931 66 LSITMHDAKFNGFLSIMGALQFME-TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDL 144 (625)
Q Consensus 66 l~~~~~D~~~~~~~a~~~~~~l~~-~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~ 144 (625)
.++.+.+.. -..+++.+.+.+. +++.+||.-.. ++. -+-+..++|++...- +..
T Consensus 27 ~~i~v~~~~--~e~av~~~~~~~~~~~~DviISRG~--ta~---~ir~~~~iPVV~I~v------------------s~~ 81 (186)
T d2pjua1 27 ANITPIQLG--FEKAVTYIRKKLANERCDAIIAAGS--NGA---YLKSRLSVPVILIKP------------------SGY 81 (186)
T ss_dssp CEEEEECCC--HHHHHHHHHHHTTTSCCSEEEEEHH--HHH---HHHTTCSSCEEEECC------------------CHH
T ss_pred ceEEeecCc--HHHHHHHHHHHHHcCCCCEEEECch--HHH---HHHHhCCCCEEEEcC------------------CHh
Confidence 344455443 4577777777664 68999996332 222 233456899987421 233
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEE
Q 006931 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV 224 (625)
Q Consensus 145 ~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl 224 (625)
+..+++... +.++ ++++++..... ....+.+.+.+ |+.+.... + .+.++....++++++.+.++||-
T Consensus 82 Dil~al~~a-~~~~-~kiavV~~~~~--~~~~~~~~~ll---~~~i~~~~-~-----~~~~e~~~~v~~l~~~G~~vVVG 148 (186)
T d2pjua1 82 DVLQFLAKA-GKLT-SSIGVVTYQET--IPALVAFQKTF---NLRLDQRS-Y-----ITEEDARGQINELKANGTEAVVG 148 (186)
T ss_dssp HHHHHHHHT-TCTT-SCEEEEEESSC--CHHHHHHHHHH---TCCEEEEE-E-----SSHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHH-HHhC-CCEEEEeCCcc--chHHHHHHHHh---CCceEEEE-e-----cCHHHHHHHHHHHHHCCCCEEEC
Confidence 344555443 3344 67888876543 23456666665 44554332 3 23779999999999999998874
Q ss_pred EcchhhHHHHHHHHHHcCCC
Q 006931 225 HGYSRTGLMVFDVAQRLGMM 244 (625)
Q Consensus 225 ~~~~~~~~~il~~a~~~gm~ 244 (625)
.. ...+.|.+.||.
T Consensus 149 ~~------~~~~~A~~~Gl~ 162 (186)
T d2pjua1 149 AG------LITDLAEEAGMT 162 (186)
T ss_dssp SH------HHHHHHHHTTSE
T ss_pred Ch------HHHHHHHHcCCC
Confidence 33 234677888875
No 38
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}
Probab=60.47 E-value=8.2 Score=33.36 Aligned_cols=79 Identities=3% Similarity=0.019 Sum_probs=56.6
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc-hhhHHHHHH
Q 006931 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-~~~~~~il~ 236 (625)
+.|++|..+ +.|.....+.+.+.+++.|.++.... .. .+...-...++.+...+.+.+++... .......++
T Consensus 2 ~tIgvvvp~~~~~f~~~~~~gi~~~a~~~g~~~~i~~---~~--~~~~~~~~~i~~~~~~~~d~ii~~~~~~~~~~~~~~ 76 (271)
T d2dria_ 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD---SQ--NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 76 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEE---CT--TCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe---CC--CCHHHHHHHHHHHHhcCCcccccccccccchHHHHH
Confidence 358888875 45667788899999999999886432 12 23555677888888888888887644 455567788
Q ss_pred HHHHcCC
Q 006931 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~gm 243 (625)
.+.+.++
T Consensus 77 ~~~~~~i 83 (271)
T d2dria_ 77 MANQANI 83 (271)
T ss_dssp HHHHTTC
T ss_pred HHhhcce
Confidence 8888774
No 39
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}
Probab=60.32 E-value=8.3 Score=31.30 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhc--CcEEEEcCCC--hHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEcc
Q 006931 78 FLSIMGALQFMET--DTLAIVGPQS--AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTA 140 (625)
Q Consensus 78 ~~a~~~~~~l~~~--~v~aviG~~~--s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ 140 (625)
..+++.+.+++.+ +.+.++|... +.....+..+++.+++|+++....-..+....+|++..+.
T Consensus 7 ~~~i~~~~~~L~~AkrPvii~G~g~~~~~a~~~l~~lae~~giPv~tt~~~~g~~~~~~~~~~~G~~ 73 (179)
T d1ozha1 7 DDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNFSRFAGRV 73 (179)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGGGTTTCCTTTCTTEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEEchhhChhhHHHHHHHHHHhccceEEeeccccccccccccccccccc
Confidence 4567888888865 7888888554 4567888999999999999754333344444557766554
No 40
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=58.87 E-value=19 Score=29.89 Aligned_cols=72 Identities=10% Similarity=0.014 Sum_probs=42.4
Q ss_pred HHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006931 151 AEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 151 ~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
+..+++.| ++|++|..| .|-....+.++...+..|+.+.. .... .....-....+...+..+.++|++...+
T Consensus 30 A~~~~~~g-~kV~lit~D-t~R~gA~eQL~~~a~~l~v~~~~---~~~~-~d~~~~l~~~~~~a~~~~~d~ilIDTaG 101 (211)
T d2qy9a2 30 ARQFEQQG-KSVMLAAGD-TFRAAAVEQLQVWGQRNNIPVIA---QHTG-ADSASVIFDAIQAAKARNIDVLIADTAG 101 (211)
T ss_dssp HHHHHTTT-CCEEEECCC-TTCHHHHHHHHHHHHHTTCCEEC---CSTT-CCHHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHCC-CcEEEEecc-cccccchhhhhhhhhhcCCcccc---cccC-CCHHHHHHHHHHHHHHcCCCEEEeccCC
Confidence 44445555 578888765 45556788888888888887642 1111 0111222333334445678899998765
No 41
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
Probab=56.22 E-value=13 Score=29.98 Aligned_cols=61 Identities=8% Similarity=0.019 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhc--CcEEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEc
Q 006931 78 FLSIMGALQFMET--DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQT 139 (625)
Q Consensus 78 ~~a~~~~~~l~~~--~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~ 139 (625)
...++.+.+++.+ +.+.++|.........+..+++.+++|+++....-..+.+ .+|..+..
T Consensus 6 ~~~i~~~~~~L~~AkrPvii~G~G~~~a~~~l~~lae~~~~Pv~tt~~~~g~~~~-~h~~~~G~ 68 (179)
T d1ybha1 6 DSHLEQIVRLISESKKPVLYVGGGCLNSSDELGRFVELTGIPVASTLMGLGSYPC-DDELSLHM 68 (179)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHCCCEEECTTTTTSSCT-TSTTEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEECHHHHHHHHHHHHHHhhhcccceecccccCCCcc-cccccccc
Confidence 3457777788765 7889998655555678899999999999974333333333 34555544
No 42
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=56.15 E-value=3.9 Score=26.11 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCcccccccccC
Q 006931 588 AVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIVTVLW 625 (625)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 625 (625)
+.+++.+++.+.+++++|+..+++ .-.++.++||
T Consensus 13 ~~~~i~i~~~s~~~y~~E~~~~~~----~f~sip~a~W 46 (57)
T d2h8pc1 13 VLLVIVLLAGSYLAVLAERGAPGA----QLITYPRALW 46 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTC----CCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCc----cccccchhhh
Confidence 345555567788999999866543 2235666665
No 43
>d1nrza_ c.38.1.1 (A:) Sorbose permease subunit IIb , EIIb-sor {Klebsiella pneumoniae [TaxId: 573]}
Probab=54.22 E-value=12 Score=29.72 Aligned_cols=82 Identities=11% Similarity=-0.032 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEE
Q 006931 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 225 (625)
Q Consensus 146 ~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~ 225 (625)
.++.+....++++-+++.++ +|........+.+.+.+.-.|+++... + .++....+++-+..+.++++++
T Consensus 14 HGQV~~~W~~~~~~~~IiVv-dD~~A~D~~~k~~l~mA~P~gvk~~i~---s------ve~a~~~l~~~~~~~~~v~il~ 83 (163)
T d1nrza_ 14 HGQVTTVWSKVANAQRIIIC-NDDVFNDEVRRTLLRQAAPPGMKVNVV---S------LEKAVAVYHNPQYQDETVFYLF 83 (163)
T ss_dssp CHHHHHHHHHHHTCSEEEEE-CHHHHTCHHHHHHHHHTCCTTCEEEEE---C------HHHHHHHHTCGGGTTCEEEEEE
T ss_pred hhhhhhhhhcccCCCEEEEE-cchhhCCHHHHHHHHhhCCCCCEEEEE---e------HHHHHHHHhcCcccCceEEEEE
Confidence 47888899999999999655 444444456677777777778877642 1 3444445554444677999999
Q ss_pred cchhhHHHHHHH
Q 006931 226 GYSRTGLMVFDV 237 (625)
Q Consensus 226 ~~~~~~~~il~~ 237 (625)
.++.++..++++
T Consensus 84 ~~~~d~~~l~~~ 95 (163)
T d1nrza_ 84 TNPHDVLTMVRQ 95 (163)
T ss_dssp SSHHHHHHHHTT
T ss_pred CCHHHHHHHHHc
Confidence 999988877643
No 44
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}
Probab=53.34 E-value=43 Score=29.14 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=51.6
Q ss_pred EEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcC
Q 006931 163 IAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 242 (625)
Q Consensus 163 ~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g 242 (625)
.+|+....-+......+.+.+++.|+++....+-. ..+..++.+++.+.+.|+|++.+.......++..+.+..
T Consensus 4 l~i~N~~s~~~~~~~~~~~~l~~~g~~~~v~~T~~------~g~a~~~~~~~~~~~~d~Ivv~GGDGTv~ev~~gl~~~~ 77 (295)
T d2bona1 4 LLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWE------KGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCE 77 (295)
T ss_dssp EEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCS------TTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCchHHHHHHHHHHHCCCEEEEEEcCC------cchHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHhcc
Confidence 34544333344556778888999999886544322 346777888887778899988888777888888777654
No 45
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=53.25 E-value=24 Score=26.11 Aligned_cols=68 Identities=16% Similarity=0.106 Sum_probs=44.9
Q ss_pred cEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc--chhhHHHHHHH
Q 006931 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG--YSRTGLMVFDV 237 (625)
Q Consensus 160 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~--~~~~~~~il~~ 237 (625)
|+| +|.+|+. ...+.+...+++.|.++... . +-.+.++.+++..+++|++.. ...+...++++
T Consensus 2 krI-LiVDD~~---~~~~~l~~~L~~~g~~v~~a---~--------~~~~al~~~~~~~~dlil~D~~mp~~dG~el~~~ 66 (123)
T d1mb3a_ 2 KKV-LIVEDNE---LNMKLFHDLLEAQGYETLQT---R--------EGLSALSIARENKPDLILMDIQLPEISGLEVTKW 66 (123)
T ss_dssp CEE-EEECSCH---HHHHHHHHHHHHTTCEEEEE---S--------CHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHH
T ss_pred ceE-EEEECCH---HHHHHHHHHHHHCCCEEEEE---C--------CHHHHHHHHHhCCCCEEEEEeccCCCcHHHHHHH
Confidence 354 4555554 35778888899999887632 1 223455666666799999864 44567788888
Q ss_pred HHHcC
Q 006931 238 AQRLG 242 (625)
Q Consensus 238 a~~~g 242 (625)
.++..
T Consensus 67 ir~~~ 71 (123)
T d1mb3a_ 67 LKEDD 71 (123)
T ss_dssp HHHST
T ss_pred HHhCC
Confidence 87654
No 46
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Probab=52.66 E-value=32 Score=26.40 Aligned_cols=76 Identities=8% Similarity=0.121 Sum_probs=46.0
Q ss_pred cEEEEEEecCCCCc--chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch------hhH
Q 006931 160 GEVIAIFNDDDQGR--NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS------RTG 231 (625)
Q Consensus 160 ~~v~ii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~------~~~ 231 (625)
++|.|||. +.+|. ..++.+.+.+.+.|+++.... +. ..+.......+. +.+.|++.++. ...
T Consensus 3 ~Ki~IiY~-S~tGnTe~~A~~Ia~~l~~~g~ev~~~~-~~------~~~~~~~~~~l~--~~d~vi~Gspt~~~~~~~~~ 72 (152)
T d1e5da1 3 NKVVIFYD-SMWHSTEKMARVLAESFRDEGCTVKLMW-CK------ACHHSQIMSEIS--DAGAVIVGSPTHNNGILPYV 72 (152)
T ss_dssp SEEEEEEC-CSSSHHHHHHHHHHHHHHHTTCEEEEEE-TT------TSCHHHHHHHHH--TCSEEEEECCCBTTBCCHHH
T ss_pred CeEEEEEE-CCCcHHHHHHHHHHHHHhhCCCEEEEee-cc------cCChhhhccchh--hCCEEEEeccccCCccCchh
Confidence 57889994 34453 557788888888888776432 22 223344455554 36677775543 456
Q ss_pred HHHHHHHHHcCCCC
Q 006931 232 LMVFDVAQRLGMMD 245 (625)
Q Consensus 232 ~~il~~a~~~gm~~ 245 (625)
..++.........+
T Consensus 73 ~~~l~~~~~~~~~~ 86 (152)
T d1e5da1 73 AGTLQYIKGLRPQN 86 (152)
T ss_dssp HHHHHHHHHTCCCS
T ss_pred HHHHHHhhccCCCC
Confidence 67777666555433
No 47
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Probab=52.34 E-value=3.2 Score=35.09 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=28.1
Q ss_pred CcEEEEcCCChHHHHHHHHhhhcCCCcEEeec
Q 006931 91 DTLAIVGPQSAVMAHVLSHLANELQVPLLSFT 122 (625)
Q Consensus 91 ~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~ 122 (625)
.|++|.||.+|.=+.....+++.+++|+||.|
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~gl~~iStG 35 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSG 35 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEECHH
Confidence 57888899999988888999999999999853
No 48
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}
Probab=51.41 E-value=41 Score=24.62 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=50.2
Q ss_pred cEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEE--cchhhHHHHHHH
Q 006931 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH--GYSRTGLMVFDV 237 (625)
Q Consensus 160 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~--~~~~~~~~il~~ 237 (625)
|+| +|.+|+. ...+.+...+++.|..+... .+..+.++.+++..+++|++. .+..+...++++
T Consensus 1 KkI-LiVDD~~---~~~~~l~~~L~~~g~~v~~a-----------~~~~~al~~l~~~~~dlil~D~~mp~~~G~~l~~~ 65 (121)
T d1zesa1 1 RRI-LVVEDEA---PIREMVCFVLEQNGFQPVEA-----------EDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKH 65 (121)
T ss_dssp CEE-EEECSCH---HHHHHHHHHHHHTTCEEEEE-----------CSHHHHHHHSSSSCCSEEEECSSCTTSCHHHHHHH
T ss_pred CEE-EEEeCCH---HHHHHHHHHHHHCCCEEEEE-----------CChHHHHHHHHccCCCEEEeecCCCCCCHHHHHHH
Confidence 354 3444443 46778888888888876532 133466777788889999986 444567778888
Q ss_pred HHHcCCCCCCeEEEeeC
Q 006931 238 AQRLGMMDSGYVWIATT 254 (625)
Q Consensus 238 a~~~gm~~~~~~~i~~~ 254 (625)
.++......-.+.+.+.
T Consensus 66 lr~~~~~~~~pvi~lt~ 82 (121)
T d1zesa1 66 LKRESMTRDIPVVMLTA 82 (121)
T ss_dssp HHHSTTTTTSCEEEEES
T ss_pred HHhCccCCCCeEEEEEC
Confidence 77654332233444444
No 49
>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}
Probab=50.46 E-value=42 Score=26.50 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=46.8
Q ss_pred HcCCcEEEEEEecCCCCc---chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHH-hcCCceEEEEEcch
Q 006931 156 YFGWGEVIAIFNDDDQGR---NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-RMMEARVIVVHGYS 228 (625)
Q Consensus 156 ~~~W~~v~ii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i-~~~~~~vIvl~~~~ 228 (625)
.|.--+|+||...|..|. ..-..+.+.+++.|.++.....++.+ .......+.+. ...+.++|+..+..
T Consensus 5 ~f~p~rvaiitvsD~~g~~~D~nGp~L~~~l~~~G~~v~~~~iv~Dd----~~~~~~~l~~~~~~~~~dlIiTtGGt 77 (170)
T d1mkza_ 5 EFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN----RYAIRAQVSAWIASDDVQVVLITGGT 77 (170)
T ss_dssp SCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CcCCceEEEEEEcCCCCcCCCChHHHHHHHHHHCCCEEEEeeeeCCC----HHHHHHHHHhhhhcccceEEEEeeee
Confidence 355568888887554444 34568888999999998876666643 55666666553 44568888876544
No 50
>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}
Probab=49.50 E-value=8.6 Score=31.13 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhc--CcEEEEcCCC--hHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccC
Q 006931 78 FLSIMGALQFMET--DTLAIVGPQS--AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAP 141 (625)
Q Consensus 78 ~~a~~~~~~l~~~--~v~aviG~~~--s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~p 141 (625)
.++++.+.+++.+ +.+.++|... +.....+..+++.+++|+++... ....-+..+|.++-+.+
T Consensus 6 ~~~i~~a~~lL~~AkrPvii~G~g~~~~~a~~~l~~lae~~~iPv~~t~~-~kg~~p~~hp~~~G~~~ 72 (177)
T d2ihta1 6 QKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYI-AKGVLPVGHELNYGAVT 72 (177)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECST-TTTSSCTTCTTEEEECC
T ss_pred HHHHHHHHHHHHhCCCEEEEECcCcchhhhHHHHHHHhhcceEEEEeccc-cccCCCCcccceeeeee
Confidence 5677788888865 7888888554 35678889999999999997433 33233344677776543
No 51
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}
Probab=49.49 E-value=15 Score=28.92 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhc--CcEEEEcCCC--hHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCc
Q 006931 78 FLSIMGALQFMET--DTLAIVGPQS--AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPN 142 (625)
Q Consensus 78 ~~a~~~~~~l~~~--~v~aviG~~~--s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps 142 (625)
...++.+.+++.+ +.+.++|... +.....+..+++.+++|.+........+-+...|++..+.+.
T Consensus 6 ~~~ld~~~~~l~~A~rPvii~G~g~~~~~~~~~l~~lae~l~~pv~~t~~~~~~~~~~~~p~~~G~~~~ 74 (160)
T d1q6za1 6 DQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPA 74 (160)
T ss_dssp HHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSSCSBCCSCTTSTTEEEECCS
T ss_pred HHHHHHHHHHHHhCCCEEEEECcCccccccchHHHHHHHhcCceEEeeccccccccccccccccccccc
Confidence 4556777777764 8899999663 356688899999999987642222222333445776666543
No 52
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=47.62 E-value=47 Score=24.18 Aligned_cols=59 Identities=10% Similarity=0.140 Sum_probs=38.8
Q ss_pred chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch--hhHHHHHHHHHHcC
Q 006931 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQRLG 242 (625)
Q Consensus 174 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~--~~~~~il~~a~~~g 242 (625)
...+.++..+++.|..+.... .+..+.++.+++..+++|++...- .+...++++.++.+
T Consensus 12 ~~~~~l~~~L~~~g~~v~~~a----------~~~~~al~~~~~~~~dliilD~~mp~~~G~e~~~~ir~~~ 72 (118)
T d1u0sy_ 12 FMRMMLKDIITKAGYEVAGEA----------TNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKID 72 (118)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE----------SSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCceEEEE----------CCHHHHHHHHHhccCCEEEEecCCCCCCHHHHHHHHHHhC
Confidence 367778888888888764321 123455666666778999886443 56677777777655
No 53
>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}
Probab=46.26 E-value=30 Score=29.96 Aligned_cols=79 Identities=5% Similarity=0.024 Sum_probs=52.8
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhcc-ceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc-chhhHHHHH
Q 006931 160 GEVIAIFND--DDQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG-YSRTGLMVF 235 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~-~~~~~~~il 235 (625)
.||+++..+ +.|.....+.+.+.+++. |+++.... . . .+...-...++++...+++.|++.. ........+
T Consensus 2 ~kIgv~~~~~~~~f~~~i~~gi~~~a~~~~~~~l~~~~--~-~--~~~~~q~~~i~~li~~~vDgiii~~~~~~~~~~~~ 76 (305)
T d2fvya1 2 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND--S-Q--NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 76 (305)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEE--C-T--TCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEc--C-C--CCHHHHHHHHHHHHHcCCCEEEeecccccccHHHH
Confidence 478888764 455556677787777766 67766432 1 1 2345556677777778899888864 456677778
Q ss_pred HHHHHcCC
Q 006931 236 DVAQRLGM 243 (625)
Q Consensus 236 ~~a~~~gm 243 (625)
+++.+.+.
T Consensus 77 ~~~~~~~i 84 (305)
T d2fvya1 77 EKARGQNV 84 (305)
T ss_dssp HHHHTTTC
T ss_pred HHHHhcCC
Confidence 88877663
No 54
>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=45.68 E-value=45 Score=26.04 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=41.8
Q ss_pred EEEEEEecCC--CC---cchHHHHHHHHhcc-----ceEEEEeeecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcch
Q 006931 161 EVIAIFNDDD--QG---RNGVTALGDKLAEI-----RCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYS 228 (625)
Q Consensus 161 ~v~ii~~d~~--~g---~~~~~~l~~~l~~~-----g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~~ 228 (625)
+++||...|. .| ...-..+.+.+.+. |.++.....++.+ .+.+.+.++++.+ .+.|+||..+..
T Consensus 5 rvaIitvsD~~~~G~~~D~~G~~l~~~l~~~~~~~~G~~v~~~~ivpDd----~~~I~~~l~~~~~~~~~D~IittGGt 79 (161)
T d1uuya_ 5 KVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE----VERIKDILQKWSDVDEMDLILTLGGT 79 (161)
T ss_dssp EEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEECCCCCCCCcCCCchHHHHHHHHhhccccCCcEEEEEEEECCC----HHHHHHHHHHhhhcCCceEEEEecCC
Confidence 5677765331 11 13345566666654 8888887778754 7888888888654 568988886543
No 55
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=45.54 E-value=38 Score=24.95 Aligned_cols=65 Identities=14% Similarity=0.056 Sum_probs=43.3
Q ss_pred EEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHc
Q 006931 164 AIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRL 241 (625)
Q Consensus 164 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~ 241 (625)
+|.+|+. ...+.++..+++.|..+... .. ..+.++.+++..+++|++... ..+...++++.++.
T Consensus 7 LIVDDd~---~~~~~l~~~L~~~g~~v~~a---~~--------~~~a~~~l~~~~~dlii~D~~mp~~~G~el~~~l~~~ 72 (123)
T d1krwa_ 7 WVVDDDS---SIRWVLERALAGAGLTCTTF---EN--------GNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQR 72 (123)
T ss_dssp EEESSSH---HHHHHHHHHHHHTTCEEEEE---SS--------SHHHHHHHTTCCCSEEEECCSSSSSTTHHHHHHHHHH
T ss_pred EEEECCH---HHHHHHHHHHHHCCCEEEEe---CC--------HHHHHHHHHhCCCCEEEehhhcCCchHHHHHHHHHHh
Confidence 4555543 36788888998889887632 21 235667777788999998643 34566777777665
Q ss_pred C
Q 006931 242 G 242 (625)
Q Consensus 242 g 242 (625)
+
T Consensus 73 ~ 73 (123)
T d1krwa_ 73 H 73 (123)
T ss_dssp S
T ss_pred C
Confidence 4
No 56
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}
Probab=44.76 E-value=10 Score=30.87 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhc--CcEEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEc
Q 006931 78 FLSIMGALQFMET--DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQT 139 (625)
Q Consensus 78 ~~a~~~~~~l~~~--~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~ 139 (625)
...++.+.+++.+ +.+.++|.........+..+++..++|+++....-..+ +..+|++.-.
T Consensus 17 ~~~i~~~~~~L~~A~rPvii~G~G~~~a~~~l~~lae~~~~Pv~tt~~~~g~~-~~~hp~~~G~ 79 (183)
T d2ez9a1 17 VQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIV-ADRYPAYLGS 79 (183)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECGGGTTSS-CTTCTTBCCC
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCCcccchHHHHHHhhccceEEEeeccccccc-cccCcccccc
Confidence 3456666777754 88899997666666778999999999999743322223 3335665543
No 57
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}
Probab=44.56 E-value=16 Score=29.45 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhc--CcEEEEcCCChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEc
Q 006931 78 FLSIMGALQFMET--DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQT 139 (625)
Q Consensus 78 ~~a~~~~~~l~~~--~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~ 139 (625)
...++.+.+++.+ +.+.++|.........+..+++.+++|+++....-..+.+ .+|+++-.
T Consensus 8 ~~~i~~~~~~l~~Ak~Pvii~G~g~~~a~~~l~~lae~l~~Pv~~t~~~~g~ip~-~hp~~~G~ 70 (177)
T d2djia1 8 AQDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGKNFETFEW-DFEALTGS 70 (177)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECTTCGGGSCT-TCTTBCCC
T ss_pred HHHHHHHHHHHHhCCCEEEEECcChhhHHHHHHHhhhccceEEEecccccccccc-cccccccc
Confidence 3457788888875 8888898654445567889999999999874333223333 34555543
No 58
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=44.12 E-value=56 Score=24.66 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=47.2
Q ss_pred cEEEEEEecCCCCcchHHHHHHHHhccceEEEEeee-cCCCCCCChhHHHHHHHHHhcCCceEEEEEcch----hhHHHH
Q 006931 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSA-LPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMV 234 (625)
Q Consensus 160 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~-~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~----~~~~~i 234 (625)
++|.+-....+.-..+..-+...++..|++|.+--. .| . ...++.+++.++++|.+.... .....+
T Consensus 4 ~kVvi~~~~gD~H~lG~~mva~~l~~~G~~V~~LG~~~p------~---e~iv~a~~~~~~d~v~lS~~~~~~~~~~~~~ 74 (137)
T d1ccwa_ 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSP------Q---ELFIKAAIETKADAILVSSLYGQGEIDCKGL 74 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEEC------H---HHHHHHHHHHTCSEEEEEECSSTHHHHHTTH
T ss_pred CEEEEEecCCChhHHHHHHHHHHHHHCCCeEEecccccC------H---HHHHHHHHhcCCCEEEEeeccccchHHHHHH
Confidence 355444444444455677888889999999886432 22 2 345666666789998886543 345555
Q ss_pred HHHHHHcCC
Q 006931 235 FDVAQRLGM 243 (625)
Q Consensus 235 l~~a~~~gm 243 (625)
+++.++.++
T Consensus 75 ~~~l~~~~~ 83 (137)
T d1ccwa_ 75 RQKCDEAGL 83 (137)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhcc
Confidence 666666664
No 59
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}
Probab=43.50 E-value=44 Score=29.38 Aligned_cols=73 Identities=16% Similarity=0.058 Sum_probs=48.6
Q ss_pred cEEEEEEecCCCCc----chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHH
Q 006931 160 GEVIAIFNDDDQGR----NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 235 (625)
Q Consensus 160 ~~v~ii~~d~~~g~----~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il 235 (625)
|++.+|+.-. .|. .....+.+.+.+.|..+....+-. ..+....++++...+.++||+++.......++
T Consensus 3 kr~~vi~NP~-SG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~------~~~~~~~~~~~~~~~~d~ivv~GGDGTv~~v~ 75 (312)
T d2qv7a1 3 KRARIIYNPT-SGKEQFKRELPDALIKLEKAGYETSAYATEK------IGDATLEAERAMHENYDVLIAAGGDGTLNEVV 75 (312)
T ss_dssp EEEEEEECTT-STTSCHHHHHHHHHHHHHHTTEEEEEEECCS------TTHHHHHHHHHTTTTCSEEEEEECHHHHHHHH
T ss_pred ceEEEEECcC-CCCCcHHHHHHHHHHHHHHCCCeEEEEEcCC------ccHHHHHHHHHHHcCCCEEEEEcCCcHHHHHH
Confidence 6777888533 232 234566677777888776544332 34677778777777888888887777777777
Q ss_pred HHHH
Q 006931 236 DVAQ 239 (625)
Q Consensus 236 ~~a~ 239 (625)
....
T Consensus 76 ~~l~ 79 (312)
T d2qv7a1 76 NGIA 79 (312)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6654
No 60
>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.16 E-value=17 Score=29.23 Aligned_cols=61 Identities=11% Similarity=0.008 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhc--CcEEEEcCCC--hHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEc
Q 006931 78 FLSIMGALQFMET--DTLAIVGPQS--AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQT 139 (625)
Q Consensus 78 ~~a~~~~~~l~~~--~v~aviG~~~--s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~ 139 (625)
..+++.+.+++.+ +.+.++|... +.....+..+++.+++|+++.... ..+-+...|+++.+
T Consensus 17 ~~~i~~~~~~l~~AkrPvii~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~g-kg~~~e~hp~~~G~ 81 (179)
T d1pvda1 17 KEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMG-KGSISEQHPRYGGV 81 (179)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGTTTSTHHHHHHHHHHHCCCEEECGGG-TTSSCTTSTTEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEecccchhhhHHHHHHHHHhhCceEEecccc-cccccccccccccc
Confidence 3556677777754 8889998655 356788899999999999974333 32333445776654
No 61
>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}
Probab=42.93 E-value=19 Score=28.78 Aligned_cols=61 Identities=15% Similarity=0.273 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhc--CcEEEEcCCC--hHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEc
Q 006931 78 FLSIMGALQFMET--DTLAIVGPQS--AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQT 139 (625)
Q Consensus 78 ~~a~~~~~~l~~~--~v~aviG~~~--s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~ 139 (625)
..+++.+.+++.+ +.+.++|... +.....+..+++..++|+++....-..+ +..+|+++-+
T Consensus 9 ~~~v~~~~~~l~~AkrPvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~i-~e~~p~~~G~ 73 (175)
T d1zpda1 9 NAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAKSFF-PEENALYIGT 73 (175)
T ss_dssp HHHHHHHHHHHTTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCCEEEEGGGTTSS-CTTSTTEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECcCccccchHHHHHHHHHhhceeEEeccccccCC-CcccccccCC
Confidence 3456666677765 7888888654 4567888999999999999754332233 4456777654
No 62
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=42.63 E-value=53 Score=25.90 Aligned_cols=75 Identities=9% Similarity=0.112 Sum_probs=50.5
Q ss_pred EEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch----hhHHHHHH
Q 006931 161 EVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMVFD 236 (625)
Q Consensus 161 ~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~----~~~~~il~ 236 (625)
+|.+..-..+--..+...+...++..|++|.+.-.. ....+.++..++.++++|.++... ..+..+++
T Consensus 39 kVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~--------~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~ 110 (168)
T d7reqa2 39 RILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLF--------QTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRK 110 (168)
T ss_dssp EEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTT--------BCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHH
T ss_pred eEEEEeCCccHHHHHHHHHHHHHHhCCcceecCCCc--------CcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHH
Confidence 554444444444456788888999999998753211 123356667777889999997553 56777888
Q ss_pred HHHHcCC
Q 006931 237 VAQRLGM 243 (625)
Q Consensus 237 ~a~~~gm 243 (625)
.+++.|+
T Consensus 111 ~L~~~g~ 117 (168)
T d7reqa2 111 ELDKLGR 117 (168)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 8888874
No 63
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=42.58 E-value=8.9 Score=31.43 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=28.5
Q ss_pred hcCcEEEEcCCChHHHHHHHHhhhcCCCcEEee
Q 006931 89 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (625)
Q Consensus 89 ~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~ 121 (625)
..+++.++||..|.=+.....+++.+++++|+.
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~ 39 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 39 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEec
Confidence 347899999999987778888999999999985
No 64
>d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=42.38 E-value=20 Score=28.57 Aligned_cols=58 Identities=10% Similarity=0.081 Sum_probs=41.6
Q ss_pred ceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeee
Q 006931 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 541 (625)
Q Consensus 462 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~ 541 (625)
++|+||+... -...+-..++..+.++.. ++++++.. ++-+.++..+.+|++|++++..
T Consensus 2 G~lrIg~~~~--------------~~~~~Lp~~l~~f~~~~P-~v~l~i~~-------~~~~~l~~~l~~g~~D~~~~~~ 59 (205)
T d1ixca2 2 GELSVAYFGT--------------PIYRSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSRF 59 (205)
T ss_dssp EEEEEEECSG--------------GGGTHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESC
T ss_pred eEEEEEEEhH--------------HHHHHHHHHHHHHHHHCC-CcEEEEEE-------CCCccchhhhhhhhcccccccc
Confidence 4688888521 113455678888887764 34477766 6689999999999999997644
No 65
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]}
Probab=41.74 E-value=15 Score=31.28 Aligned_cols=69 Identities=9% Similarity=0.041 Sum_probs=44.8
Q ss_pred HHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeee---ecccccce--EecccccccceEEEE
Q 006931 492 IDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAI---VTNRTKAV--DFTQPYIESGLVVVA 566 (625)
Q Consensus 492 idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~---t~~R~~~v--dfs~p~~~~~~~~lv 566 (625)
..+++...++-|.+ ++++.+ .++..++.+|..|++|++..+... ...+.+.+ -.-.+....+..+..
T Consensus 18 l~~~k~~~k~~Gi~--Ve~v~f------~~g~~~~~Al~~G~iD~~~~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~l~~ 89 (240)
T d1xs5a_ 18 LEIAKEEVKKQHIE--LRIVEF------TNYVALNEAVMRGDILMNFFQHVPHMQQFNQEHNGDLVSVGNVHVEPLALYS 89 (240)
T ss_dssp HHHHHHHHHTTTEE--EEEEEC------SCHHHHHHHHHHTSSSEEEEEEHHHHHHHHHHHTCCEEEEEEEEECCCEEEC
T ss_pred HHHHHHHHHHcCCE--EEEEEe------CChhhHHHHHHcCCcceeccCCHHHHHHHHHhCCCcEEEeeccccCceEEEe
Confidence 35677788888887 777877 459999999999999997654322 12222222 233455555666654
Q ss_pred ec
Q 006931 567 PV 568 (625)
Q Consensus 567 ~~ 568 (625)
++
T Consensus 90 ~~ 91 (240)
T d1xs5a_ 90 RT 91 (240)
T ss_dssp SS
T ss_pred cC
Confidence 44
No 66
>d1blea_ c.38.1.1 (A:) Fructose permease, subunit IIb {Bacillus subtilis [TaxId: 1423]}
Probab=41.56 E-value=11 Score=29.82 Aligned_cols=81 Identities=10% Similarity=0.064 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEE
Q 006931 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 225 (625)
Q Consensus 146 ~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~ 225 (625)
.++.+....++++-+++.++ +|........+.+.+.+.-.|+++... +.++....+++-+..+.++++++
T Consensus 14 HGQV~~~W~~~~~~~~IiVv-dD~~A~D~~~k~~l~ma~P~gvk~~i~---------sve~a~~~l~~~~~~~~~v~vl~ 83 (161)
T d1blea_ 14 HGQILTRWIKVHAADRIIVV-SDDIAQDEMRKTLILSVAPSNVKASAV---------SVSKMAKAFHSPRYEGVTAMLLF 83 (161)
T ss_dssp CTTHHHHHHHHHTCSEEEEE-CHHHHHCHHHHHHHHTSSCTTSEEEEE---------CHHHHHHHHHCSTTTTCEEEEEE
T ss_pred hhhhhhhhhcccCCCEEEEE-cchhhCCHHHHHHHHhhCCCCCeEEEE---------EHHHHHHHHhCccccCceEEEEe
Confidence 36778889999999999655 343322234455555555567776532 14455555555545667899999
Q ss_pred cchhhHHHHHH
Q 006931 226 GYSRTGLMVFD 236 (625)
Q Consensus 226 ~~~~~~~~il~ 236 (625)
-++.++..+++
T Consensus 84 ~~~~da~~l~~ 94 (161)
T d1blea_ 84 ENPSDIVSLIE 94 (161)
T ss_dssp SSSHHHHHHHT
T ss_pred CCHHHHHHHHH
Confidence 99999887663
No 67
>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}
Probab=41.55 E-value=32 Score=30.64 Aligned_cols=103 Identities=9% Similarity=0.081 Sum_probs=59.4
Q ss_pred EccCchHHHHHHHHHHHHHc---------CCcEEEEEEec---CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChh
Q 006931 138 QTAPNDLYLMSAIAEMVSYF---------GWGEVIAIFND---DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTET 205 (625)
Q Consensus 138 r~~ps~~~~~~al~~ll~~~---------~W~~v~ii~~d---~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~ 205 (625)
...|......+.+.+.+... +=.+|++|+.+ ++|.......+.+.+++.|........+... ..+..
T Consensus 10 ~~~P~~~~~~~~~~~~~~~~p~~l~~~~~k~~~I~vi~p~~~~~~f~~~~~~~~~~~~~~~g~~~~i~~~~~~s-~~d~~ 88 (338)
T d1jx6a_ 10 DEFPEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRP-NADIK 88 (338)
T ss_dssp HHCHHHHHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCT-TCCHH
T ss_pred ccCchHHHHHHHHHHHHCcCchhhhhccCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCC-CCCHH
Confidence 34455555566666555442 11268888864 3466667788888899888765543333322 12233
Q ss_pred HHHHHHHHHhcCCceEEEEEcchhhHHHHH-HHHHHc
Q 006931 206 DVRNELVKVRMMEARVIVVHGYSRTGLMVF-DVAQRL 241 (625)
Q Consensus 206 ~~~~~l~~i~~~~~~vIvl~~~~~~~~~il-~~a~~~ 241 (625)
.-...++.+...+++.||+..........+ +.+.+.
T Consensus 89 ~q~~~i~~~i~~~vDgIIi~~~~~~~~~~i~~~~~~~ 125 (338)
T d1jx6a_ 89 QQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDST 125 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSSSTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCEEEEecCcccchHHHHHHHHhC
Confidence 344566777778899888755444444444 444443
No 68
>d1twya_ c.94.1.1 (A:) ABC transporter, periplasmic substrate-binding protein VCA0807 {Vibrio cholerae [TaxId: 666]}
Probab=41.15 E-value=26 Score=29.73 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCcccEEEeeeeeecc-cccceEecccccccceEEEEecCC
Q 006931 522 YSELINQITTGVFDAAVGDIAIVTN-RTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 522 ~~~~~~~l~~g~~D~~~~~~~~t~~-R~~~vdfs~p~~~~~~~~lv~~~~ 570 (625)
-...+..|.+|++|++...-.++.+ +...+ -..|+...+++++++..+
T Consensus 38 S~~~~~~l~~g~~di~~~s~~~~~~e~~~~~-~~~~ia~d~lviiv~~~n 86 (249)
T d1twya_ 38 STAGISLLKKGVADIAMTSRYLTESEAQNTL-HTFTLAFDGLAIVVNQAN 86 (249)
T ss_dssp HHHHHHHHHTTSCSEEEESSCCCTTTCCTTC-EEEEEEEEEEEEEECTTC
T ss_pred cHHHHHHHHcCCCeeeecccchhhhhhhcce-eeEEEEeecccccccccc
Confidence 6778999999999999876666543 22222 234678888899887655
No 69
>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}
Probab=40.95 E-value=12 Score=29.58 Aligned_cols=60 Identities=12% Similarity=-0.020 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhc--CcEEEEcCCC--hHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEc
Q 006931 79 LSIMGALQFMET--DTLAIVGPQS--AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQT 139 (625)
Q Consensus 79 ~a~~~~~~l~~~--~v~aviG~~~--s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~ 139 (625)
.+.+.+.+++.+ +.+.++|..- +.....+..+++.+++|+++....-..+ +...|.++-+
T Consensus 17 a~~~~a~~~l~~AkrP~il~G~gv~~~~a~~~l~~l~e~~~iPv~tt~~gkg~i-~e~~p~~~G~ 80 (161)
T d1ovma1 17 AFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIF-DERQAGFYGT 80 (161)
T ss_dssp HHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSCCEEEECGGGTTSS-CTTSTTCCCC
T ss_pred HHHHHHHHHHHcCCCcEEEECcCcChhhhHHHHHHHHHhcCccEEEcCCcCCcc-cccccccccc
Confidence 445566667765 7888888654 3567789999999999999843333333 3334655544
No 70
>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.49 E-value=45 Score=26.23 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=36.2
Q ss_pred HHHHHHhc--CcEEEEcCC---ChHHHHHHHHhhhcCCCcEEeeccCCCCCCCCCCCceEE
Q 006931 83 GALQFMET--DTLAIVGPQ---SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQ 138 (625)
Q Consensus 83 ~~~~l~~~--~v~aviG~~---~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r 138 (625)
.+.+++.+ +.+.++|.. .+.....+..+++.+++|+++....-..+.+ ..|+++.
T Consensus 2 kaa~lL~~AkrPvii~G~G~~~~~~a~~~l~~lae~~g~Pv~tt~~~~g~~~~-~hp~~~G 61 (171)
T d1t9ba1 2 KAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQ-EDPKSLD 61 (171)
T ss_dssp HHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCCEEECGGGTTSSCT-TSTTEEE
T ss_pred HHHHHHHHCCCeEEEECcChhhhhhHHHHHHHHHHhcCCceeecccccccccC-Ccccccc
Confidence 34566654 888999853 2345667899999999999975443333433 3455554
No 71
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=39.10 E-value=64 Score=23.37 Aligned_cols=57 Identities=7% Similarity=0.022 Sum_probs=35.1
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 006931 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 242 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~g 242 (625)
..+.+++.+++.|..+... . +-.+.++.+++..+++|++... ..+...++++.++..
T Consensus 13 ~~~~l~~~L~~~g~~v~~a---~--------~g~eal~~~~~~~~dlillD~~mP~~~G~el~~~lr~~~ 71 (119)
T d1peya_ 13 IRILLNEVFNKEGYQTFQA---A--------NGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVID 71 (119)
T ss_dssp HHHHHHHHHHHTTCEEEEE---S--------SHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCEEEEe---C--------CHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHhC
Confidence 5667777787778776521 1 2234455556667888887644 345666777776654
No 72
>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}
Probab=38.83 E-value=14 Score=27.29 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=48.0
Q ss_pred cEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCC--CCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 006931 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ--SVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (625)
Q Consensus 160 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~--~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~ 237 (625)
|+|++|...++-++ ....+.+.+.+.|.+|.- +.+.. ..... ...-+..+. ..+|+++++..++....++++
T Consensus 2 KsIAVvGaS~~~~k-~g~~v~~~L~~~g~~V~p---VnP~~~~i~G~~-~y~sl~~lp-~~~D~vvi~vp~~~~~~~l~~ 75 (116)
T d1y81a1 2 RKIALVGASKNPAK-YGNIILKDLLSKGFEVLP---VNPNYDEIEGLK-CYRSVRELP-KDVDVIVFVVPPKVGLQVAKE 75 (116)
T ss_dssp CEEEEETCCSCTTS-HHHHHHHHHHHTTCEEEE---ECTTCSEETTEE-CBSSGGGSC-TTCCEEEECSCHHHHHHHHHH
T ss_pred cEEEEEcccCCCCC-cHHHHHHHHHHCCCEEEE---EccccccccCcc-ccccchhcc-ccceEEEEEeCHHHHHHHHHH
Confidence 56777764443333 233444444556665432 22210 00000 011123333 358999999999999999999
Q ss_pred HHHcCCCCCCeEEEeeC
Q 006931 238 AQRLGMMDSGYVWIATT 254 (625)
Q Consensus 238 a~~~gm~~~~~~~i~~~ 254 (625)
+.+.|. +.+|+-++
T Consensus 76 ~~~~g~---k~v~~~~g 89 (116)
T d1y81a1 76 AVEAGF---KKLWFQPG 89 (116)
T ss_dssp HHHTTC---CEEEECTT
T ss_pred HHhcCC---ceEEeccc
Confidence 999873 46787544
No 73
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.07 E-value=8.8 Score=31.49 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=27.8
Q ss_pred CcEEEEcCCChHHHHHHHHhhhcCCCcEEee
Q 006931 91 DTLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (625)
Q Consensus 91 ~v~aviG~~~s~~~~~va~~~~~~~iP~Is~ 121 (625)
.+++++||..|.=+.....+++.+++++|+.
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~g~~~is~ 39 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEeh
Confidence 5789999999998888889999999999985
No 74
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}
Probab=38.00 E-value=76 Score=23.89 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=46.4
Q ss_pred CcEEEEEEecCCCCc--chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch------hh
Q 006931 159 WGEVIAIFNDDDQGR--NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS------RT 230 (625)
Q Consensus 159 W~~v~ii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~------~~ 230 (625)
-.++.|||. +.+|. ..++.+.+.+++.|..+.... +. ..+..+....+.+ .+.||+.++. ..
T Consensus 2 k~K~lIvY~-S~~GnT~~vA~~Ia~~l~~~g~~v~~~~-~~------~~~~~~~~~~~~~--~d~ii~Gspt~~g~~~~~ 71 (149)
T d1ycga1 2 KAKAVIAYD-TMWLSTEKMAHALMDGLVAGGCEVKLFK-LS------VSDRNDVIKEILD--ARAVLVGSPTINNDILPV 71 (149)
T ss_dssp CSEEEEEEC-CSSSHHHHHHHHHHHHHHHTTCEEEEEE-GG------GSCHHHHHHHHHH--CSEEEEECCCBTTBCCGG
T ss_pred CcEEEEEEE-CCCcHHHHHHHHHHHHHHhcCCeeEEEE-cc------ccchHHHhhhhhh--CCeEEEEeecccCCCCHH
Confidence 357888884 34554 567888888888888766432 22 2223344444443 5777776553 45
Q ss_pred HHHHHHHHHHcCCC
Q 006931 231 GLMVFDVAQRLGMM 244 (625)
Q Consensus 231 ~~~il~~a~~~gm~ 244 (625)
+..++.........
T Consensus 72 ~~~~l~~l~~~~~~ 85 (149)
T d1ycga1 72 VSPLLDDLVGLRPK 85 (149)
T ss_dssp GHHHHHHHHHHCCS
T ss_pred HHHHHHHHhccccC
Confidence 67777777665543
No 75
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}
Probab=37.50 E-value=4.4 Score=34.61 Aligned_cols=52 Identities=12% Similarity=0.129 Sum_probs=35.5
Q ss_pred ceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeeeeeeccc
Q 006931 485 DIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNR 547 (625)
Q Consensus 485 ~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R 547 (625)
.++.|+.-.+++ +..|.+ +++... +.+...+..|.+|++|+++.+......+
T Consensus 25 ~~y~g~~~gl~~---~~~Gl~--ve~~~~------~g~~~~~~al~~G~~D~~~~~~~~~~~~ 76 (228)
T d2ozza1 25 RLYEGLASGLKA---QFDGIP--FYYAHM------RGADIRVECLLNGVYDMAVVSRLAAESY 76 (228)
T ss_dssp HHHHHHHHHHHH---TTTTSC--EEEEEC------SCHHHHHHHHHTTSCSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHH---HhcCCe--EEEEEe------cCchHHHHHHHcCCCCEEecCcHHHHHH
Confidence 356676544432 335877 666655 3489999999999999998876544433
No 76
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=36.90 E-value=24 Score=30.05 Aligned_cols=65 Identities=12% Similarity=0.069 Sum_probs=46.7
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh
Q 006931 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 229 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~ 229 (625)
+-|++|..+ +.+.....+.+.+.++++|..+..... . .+.+.....++.+.+.+.+.||++....
T Consensus 3 k~Igvi~p~~~~~~~~~~~~~i~~~~~~~Gy~~~~~~s---~--~d~~~~~~~i~~l~~~~vdgiIi~~~~~ 69 (255)
T d1byka_ 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES---Q--FSPQLVAEHLGVLKRRNIDGVVLFGFTG 69 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHhccccceeeccccc
Confidence 568888864 444556788999999999988764321 1 2355667778888888999888875543
No 77
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Probab=36.47 E-value=70 Score=25.13 Aligned_cols=65 Identities=12% Similarity=0.011 Sum_probs=43.7
Q ss_pred EEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh
Q 006931 161 EVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 229 (625)
Q Consensus 161 ~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~ 229 (625)
+|+||... .......+...+.+++.|+.......... .....+.+.++++++.+.++||......
T Consensus 2 kV~Ii~Gs-~SD~~~~~~a~~~L~~~gi~~~~~v~saH---r~p~rl~~~~~~~~~~~~~viIa~AG~a 66 (169)
T d1o4va_ 2 RVGIIMGS-DSDLPVMKQAAEILEEFGIDYEITIVSAH---RTPDRMFEYAKNAEERGIEVIIAGAGGA 66 (169)
T ss_dssp EEEEEESC-GGGHHHHHHHHHHHHHTTCEEEEEECCTT---TCHHHHHHHHHHTTTTTCCEEEEEEESS
T ss_pred eEEEEECc-HhhHHHHHHHHHHHHHcCCcEEEEEeeee---cCHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 57777642 23345788888999999988665432222 2456677777888777888888765544
No 78
>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=36.08 E-value=14 Score=28.35 Aligned_cols=90 Identities=10% Similarity=0.121 Sum_probs=55.6
Q ss_pred CCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCC--CCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHH
Q 006931 158 GWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ--SVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 235 (625)
Q Consensus 158 ~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~--~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il 235 (625)
.-++|+||...++-+. ....+.+.+.+.|.+|.. +.+.. .....-+ .-+..+. ...|.++++..++....++
T Consensus 18 ~~ksIAVVGaS~~~~~-~g~~v~~~L~~~g~~v~p---VnP~~~~i~G~~~~-~sl~dlp-~~iD~v~i~vp~~~~~~~~ 91 (139)
T d2d59a1 18 RYKKIALVGASPKPER-DANIVMKYLLEHGYDVYP---VNPKYEEVLGRKCY-PSVLDIP-DKIEVVDLFVKPKLTMEYV 91 (139)
T ss_dssp HCCEEEEETCCSCTTS-HHHHHHHHHHHTTCEEEE---ECTTCSEETTEECB-SSGGGCS-SCCSEEEECSCHHHHHHHH
T ss_pred cCCeEEEEeecCCCCC-chHHHHHHHHHCCCEEEE---ECCcccccCCCccc-ccccccC-ccceEEEEEeCHHHHHHHH
Confidence 3578998886554443 344455556667877543 23320 0000011 1123333 4589999999999999999
Q ss_pred HHHHHcCCCCCCeEEEeeCcc
Q 006931 236 DVAQRLGMMDSGYVWIATTWL 256 (625)
Q Consensus 236 ~~a~~~gm~~~~~~~i~~~~~ 256 (625)
+++.+.| .+.+|+.++..
T Consensus 92 ~e~~~~g---~k~v~~~~G~~ 109 (139)
T d2d59a1 92 EQAIKKG---AKVVWFQYNTY 109 (139)
T ss_dssp HHHHHHT---CSEEEECTTCC
T ss_pred HHHHHhC---CCEEEEecccc
Confidence 9999987 35789876644
No 79
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=35.97 E-value=26 Score=27.44 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=33.0
Q ss_pred HHHHHHHHhc--CcEEEEcCCChHHHHHHHHhhhcCCCcEEee
Q 006931 81 IMGALQFMET--DTLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (625)
Q Consensus 81 ~~~~~~l~~~--~v~aviG~~~s~~~~~va~~~~~~~iP~Is~ 121 (625)
.+.+.+++++ +.+.++|+........+...++..++|+++.
T Consensus 9 ~~~~a~~i~~AkrPvii~G~g~~~~~~e~~~~~~~~~ipv~~T 51 (158)
T d1ytla1 9 GKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVAT 51 (158)
T ss_dssp HHHHHHHHHHCSSEEEEECSCCCHHHHHHHHHHHTSSSEEEEE
T ss_pred HHHHHHHHHhCCCCEEEECcChHHhHHHHHHHHHHhCcCEEec
Confidence 4566677764 8999999888777777888889999999874
No 80
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=35.50 E-value=14 Score=28.03 Aligned_cols=91 Identities=14% Similarity=0.060 Sum_probs=52.6
Q ss_pred cCCcEEEEEEecCCCCcchHHHHHHHHhccc-eEEEEeeecCCCC--CCChhHHHHHHHHHhcCCceEEEEEcchhhHHH
Q 006931 157 FGWGEVIAIFNDDDQGRNGVTALGDKLAEIR-CKISYKSALPPDQ--SVTETDVRNELVKVRMMEARVIVVHGYSRTGLM 233 (625)
Q Consensus 157 ~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g-~~v~~~~~~~~~~--~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~ 233 (625)
|+-++|++|...+.-+......+ +.+.+.+ .+|.- +.+.. .....-+ .-+..| ...+|.++++..++.+..
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~-~~L~~~~~g~v~p---VnP~~~~i~G~~~y-~sl~dl-p~~vDlvvi~vp~~~~~~ 79 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVF-KNLKEYKKGKVYP---VNIKEEEVQGVKAY-KSVKDI-PDEIDLAIIVVPKRFVKD 79 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHH-HHHTTCCSSEEEE---ECSSCSEETTEECB-SSTTSC-SSCCSEEEECSCHHHHHH
T ss_pred CCCCeEEEEccCCCCCCcHHHHH-HHHHHcCCCcEEE---eccCccccCCeEee-cchhhc-CCCCceEEEecChHHhHH
Confidence 56789999976544444343334 4455544 34432 22220 0000000 112222 246899999999999999
Q ss_pred HHHHHHHcCCCCCCeEEEeeCcc
Q 006931 234 VFDVAQRLGMMDSGYVWIATTWL 256 (625)
Q Consensus 234 il~~a~~~gm~~~~~~~i~~~~~ 256 (625)
+++++.+.|. +.+|+.+..+
T Consensus 80 ~~~~~~~~g~---~~~vi~s~Gf 99 (129)
T d2csua1 80 TLIQCGEKGV---KGVVIITAGF 99 (129)
T ss_dssp HHHHHHHHTC---CEEEECCCSS
T ss_pred HHHHHHHcCC---CEEEEecccc
Confidence 9999999883 4577776654
No 81
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=35.40 E-value=8.3 Score=32.35 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=26.3
Q ss_pred cEEEEcCCChHHHHHHHHhhhcCCCcEEeec
Q 006931 92 TLAIVGPQSAVMAHVLSHLANELQVPLLSFT 122 (625)
Q Consensus 92 v~aviG~~~s~~~~~va~~~~~~~iP~Is~~ 122 (625)
+++|-||..|.=+.....+++.+++|+||.|
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istG 35 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 35 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHH
Confidence 4566799999888888899999999999854
No 82
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.54 E-value=82 Score=23.27 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=34.9
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 006931 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 242 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~g 242 (625)
..+.+...++..|..+.. ... . .+.++.++...+++|++... ..+...++++.++.+
T Consensus 20 ~~~~l~~~L~~~g~~v~~---a~~-----g---~ea~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~~ 78 (133)
T d2ayxa1 20 NRRLLADQLGSLGYQCKT---AND-----G---VDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLG 78 (133)
T ss_dssp HHHHHHHHHHHHTSEEEE---ECC-----S---HHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEE---ECc-----H---HHHHHHHhccCceEEEEeccCCCCCHHHHHHHHHHhC
Confidence 567777788888887653 221 1 23455556677888888643 345556666666554
No 83
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=33.79 E-value=98 Score=24.08 Aligned_cols=84 Identities=13% Similarity=0.016 Sum_probs=50.8
Q ss_pred CCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHH-hcCCceEEEEEcch-hhHHHHH
Q 006931 158 GWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-RMMEARVIVVHGYS-RTGLMVF 235 (625)
Q Consensus 158 ~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i-~~~~~~vIvl~~~~-~~~~~il 235 (625)
.--.|++|.+... ....+...+.+.|+.+.....+..+... ..++.+.+..+ .+..+++|+++... .+...++
T Consensus 22 ~~G~va~iSQSG~----~~~~~~~~~~~~g~g~s~~~~~G~~~~~-~~~~~d~l~~~~~D~~t~vI~l~~E~~~~~~~f~ 96 (167)
T d1oi7a2 22 KRGRVGIISRSGT----LTYEAAAALSQAGLGTTTTVGIGGDPVI-GTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEA 96 (167)
T ss_dssp CEEEEEEEESCHH----HHHHHHHHHHHTTCCEEEEEECCSSSCC-SSCHHHHHHHHHTCTTCCEEEEEECSSSSHHHHH
T ss_pred CCCcEEEEEeccH----HHHHHHHHHHHcCCCceeEEEecceeec-CchHHHHHHHHhhccccceeeEeeeccchHHHHH
Confidence 3357888875443 4556667777777766665555443111 12233444443 34677889888776 5778888
Q ss_pred HHHHHcCCCCC
Q 006931 236 DVAQRLGMMDS 246 (625)
Q Consensus 236 ~~a~~~gm~~~ 246 (625)
+.+++.....+
T Consensus 97 ~~~~~~~~~kp 107 (167)
T d1oi7a2 97 AAWVKDHMKKP 107 (167)
T ss_dssp HHHHHHHCCSC
T ss_pred HHHHHHhcCCc
Confidence 88877654333
No 84
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=33.69 E-value=82 Score=23.01 Aligned_cols=75 Identities=13% Similarity=0.072 Sum_probs=50.3
Q ss_pred EEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc--chhhHHHHHHHHHHc
Q 006931 164 AIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG--YSRTGLMVFDVAQRL 241 (625)
Q Consensus 164 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~--~~~~~~~il~~a~~~ 241 (625)
+|.+|+. ...+.+...+++.|..+... .+....+..++....++|++.. ...+...++++.++.
T Consensus 6 LiVDDd~---~~~~~l~~~L~~~g~~v~~a-----------~~~~~al~~~~~~~~dliilD~~mp~~~G~~~~~~i~~~ 71 (128)
T d1yioa2 6 FVVDDDM---SVREGLRNLLRSAGFEVETF-----------DCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAI 71 (128)
T ss_dssp EEECSCH---HHHHHHHHHHHTTTCEEEEE-----------SSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHT
T ss_pred EEEECCH---HHHHHHHHHHHHcCCCcccc-----------ccHHHHHHHHHhcCCCEeehhhhcccchhHHHHHHHHhh
Confidence 4454543 36788999999999887532 1345677777778899999864 446677888888876
Q ss_pred CCCCCCeEEEeeC
Q 006931 242 GMMDSGYVWIATT 254 (625)
Q Consensus 242 gm~~~~~~~i~~~ 254 (625)
. ....+.+++.
T Consensus 72 ~--~~~~ii~lt~ 82 (128)
T d1yioa2 72 S--DGIPIVFITA 82 (128)
T ss_dssp T--CCCCEEEEES
T ss_pred C--CCCeEEEEEE
Confidence 5 2333445544
No 85
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}
Probab=33.61 E-value=81 Score=22.92 Aligned_cols=57 Identities=12% Similarity=0.015 Sum_probs=39.6
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 006931 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 242 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~g 242 (625)
..+.++..+++.|..+... . +....+..+++..+++|++... ..+...++++.++.+
T Consensus 15 ~~~~l~~~L~~~g~~v~~a---~--------~~~~al~~~~~~~~dlvi~D~~mp~~~G~e~~~~lr~~~ 73 (123)
T d1dbwa_ 15 VRKSLAFMLTMNGFAVKMH---Q--------SAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLK 73 (123)
T ss_dssp HHHHHHHHHHHTTCEEEEE---S--------CHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCEEEEE---C--------CHHHHHHHHhhcCCcEEEEeccCccccchHHHHHHHhcC
Confidence 5777888888888876531 1 2345667777788899888643 456777888887755
No 86
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.86 E-value=69 Score=24.96 Aligned_cols=77 Identities=13% Similarity=0.258 Sum_probs=47.0
Q ss_pred ceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHH
Q 006931 135 FFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV 214 (625)
Q Consensus 135 ~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i 214 (625)
|++....+ .-.+++.+++.....+++. |+.+. ....+.+.+.+++.|..+.. +..+ ....+-...++..
T Consensus 5 ~~v~~~~~--~K~~~L~~ll~~~~~~k~i-IF~~~---~~~~~~l~~~L~~~~~~~~~---ihg~--~~~~~r~~~l~~F 73 (168)
T d1t5ia_ 5 YYVKLKDN--EKNRKLFDLLDVLEFNQVV-IFVKS---VQRCIALAQLLVEQNFPAIA---IHRG--MPQEERLSRYQQF 73 (168)
T ss_dssp EEEECCGG--GHHHHHHHHHHHSCCSSEE-EECSS---HHHHHHHHHHHHHTTCCEEE---ECTT--SCHHHHHHHHHHH
T ss_pred EEEEeChH--HHHHHHHHHHHhCCCCeEE-EEEee---eecchhhhhhhccccccccc---cccc--cchhhhhhhhhhh
Confidence 44454433 3358899999888887874 44443 24577888888888887653 2222 2344555566666
Q ss_pred hcCCceEE
Q 006931 215 RMMEARVI 222 (625)
Q Consensus 215 ~~~~~~vI 222 (625)
++...+++
T Consensus 74 ~~g~~~iL 81 (168)
T d1t5ia_ 74 KDFQRRIL 81 (168)
T ss_dssp HTTSCSEE
T ss_pred ccccceee
Confidence 65555543
No 87
>d1jlja_ c.57.1.1 (A:) Gephyrin N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.67 E-value=67 Score=25.06 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=42.7
Q ss_pred EEEEEEecCC--CC---cchHHHHHHHHhc---cceEEEEeeecCCCCCCChhHHHHHHHHH-hcCCceEEEEEcch
Q 006931 161 EVIAIFNDDD--QG---RNGVTALGDKLAE---IRCKISYKSALPPDQSVTETDVRNELVKV-RMMEARVIVVHGYS 228 (625)
Q Consensus 161 ~v~ii~~d~~--~g---~~~~~~l~~~l~~---~g~~v~~~~~~~~~~~~~~~~~~~~l~~i-~~~~~~vIvl~~~~ 228 (625)
+++||...|. .| ......+.+.+++ .|+++.....++.. .+.+...+.+. ...+.|+|+..+..
T Consensus 4 rv~iit~gDe~~~G~~~D~ng~~L~~~l~~~~~~G~~v~~~~iV~Dd----~~~i~~al~~~~~~~~~D~ViTtGG~ 76 (169)
T d1jlja_ 4 RVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE----IEEIKETLIDWCDEKELNLILTTGGT 76 (169)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEeCCCcccCCcCCccHHHHHHHHHhhccCCcEEEEEEEeccc----hhhHHHHHHHHhhcccccEEEEecCc
Confidence 5677765433 22 2345677777776 58999888888754 67777777664 44678999887553
No 88
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}
Probab=32.56 E-value=1e+02 Score=25.88 Aligned_cols=84 Identities=11% Similarity=0.002 Sum_probs=55.1
Q ss_pred HHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--
Q 006931 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-- 227 (625)
Q Consensus 150 l~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-- 227 (625)
+++... -|-.-++|+++. .|.....+.+...-+..++.|....-+-.. -++.+-+..+++.|++...
T Consensus 66 ~a~~ye-~GA~aiSVLTd~-~~F~Gs~~~l~~vr~~~~~PiLrKDFIid~---------~QI~ea~~~GADaiLLI~~~L 134 (251)
T d1i4na_ 66 FIRMYD-ELADAISILTEK-HYFKGDPAFVRAARNLTCRPILAKDFYIDT---------VQVKLASSVGADAILIIARIL 134 (251)
T ss_dssp HHHHHH-HHCSEEEEECCC-SSSCCCTHHHHHHHTTCCSCEEEECCCCST---------HHHHHHHHTTCSEEEEEGGGS
T ss_pred HHHHHh-cCCcceEEeccc-CCCCCCHHHHHHHhhcccCchhhhhhhhCH---------HHHHHHHhhccceEEeecccc
Confidence 334333 378888888744 455556677776655567666544333211 2455666789999988644
Q ss_pred -hhhHHHHHHHHHHcCCC
Q 006931 228 -SRTGLMVFDVAQRLGMM 244 (625)
Q Consensus 228 -~~~~~~il~~a~~~gm~ 244 (625)
.+....++..|..+||.
T Consensus 135 ~~~~l~~l~~~a~~lgle 152 (251)
T d1i4na_ 135 TAEQIKEIYEAAEELGMD 152 (251)
T ss_dssp CHHHHHHHHHHHHTTTCE
T ss_pred cHHHHHHHHHHHHHhCCe
Confidence 46788999999999985
No 89
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}
Probab=32.52 E-value=9.7 Score=31.13 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=26.9
Q ss_pred CcEEEEcCCChHHHHHHHHhhhcCCCcEEee
Q 006931 91 DTLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (625)
Q Consensus 91 ~v~aviG~~~s~~~~~va~~~~~~~iP~Is~ 121 (625)
.+++|+||..|.=+.....+++.+++++|+.
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~ 37 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEch
Confidence 4688999999987777888999999999975
No 90
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]}
Probab=31.74 E-value=56 Score=25.56 Aligned_cols=65 Identities=6% Similarity=-0.029 Sum_probs=42.9
Q ss_pred EEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh
Q 006931 161 EVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 229 (625)
Q Consensus 161 ~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~ 229 (625)
+|+||... .......+...+.|++.|+.......-.. .....+.+.+++..+.+.+|||......
T Consensus 3 KV~IImGS-~SD~~~~~~a~~~L~~~gI~~e~~v~SAH---Rtp~~l~~~~~~~~~~~~~ViIa~AG~a 67 (163)
T d1qcza_ 3 RVAIVMGS-KSDWATMQFAAEIFEILNVPHHVEVVSAH---RTPDKLFSFAESAEENGYQVIIAGAGGA 67 (163)
T ss_dssp CEEEEESS-GGGHHHHHHHHHHHHHHTCCEEEEECCTT---TCHHHHHHHHHHTTTTTCSEEEEEECSS
T ss_pred eEEEEECc-HhhHHHHHHHHHHHHHcCCCeEEEEeccc---cCHHHHHHHHHHHHHcCCeEEEEeccCC
Confidence 56777642 23345788888999999988665432222 2356677777877777788888765543
No 91
>d1p5dx1 c.84.1.1 (X:9-154) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=31.67 E-value=66 Score=24.52 Aligned_cols=52 Identities=19% Similarity=0.102 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeec
Q 006931 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSAL 196 (625)
Q Consensus 145 ~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~ 196 (625)
..+.++++.+..-+.++|.|=++.-..+....+.+.+.+...|++|......
T Consensus 26 ~ig~a~~~~~~~~~~~~VvIg~D~R~ss~~~~~~~~~gl~~~G~~V~~~g~~ 77 (146)
T d1p5dx1 26 WIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMV 77 (146)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCTTHHHHHHHHHHHHHTBTCEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEEECCccchhhhhhhhheeeccCceEEEecccc
Confidence 3566777777776777877666555666677777888888888877644433
No 92
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}
Probab=31.48 E-value=86 Score=22.58 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=42.1
Q ss_pred EEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHc
Q 006931 164 AIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRL 241 (625)
Q Consensus 164 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~ 241 (625)
+|.+|+. ...+.+...++..|.+|... .+..+.+..+++..+++|++... ..+...++++.++.
T Consensus 4 LvVDDd~---~~~~~l~~~L~~~G~~v~~a-----------~~g~eal~~l~~~~~dliilD~~mP~~~G~e~~~~i~~~ 69 (119)
T d2pl1a1 4 LVVEDNA---LLRHHLKVQIQDAGHQVDDA-----------EDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSN 69 (119)
T ss_dssp EEECSCH---HHHHHHHHHHHHTTCEEEEE-----------SSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHT
T ss_pred EEEeCCH---HHHHHHHHHHHHCCCEEEEE-----------CCHHHHHHHHHhcccceeehhccCCCchhHHHHHHHHhc
Confidence 3444443 35777888888888876532 12335566667778898888643 45567778887775
Q ss_pred C
Q 006931 242 G 242 (625)
Q Consensus 242 g 242 (625)
+
T Consensus 70 ~ 70 (119)
T d2pl1a1 70 D 70 (119)
T ss_dssp T
T ss_pred C
Confidence 5
No 93
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=31.44 E-value=1e+02 Score=25.02 Aligned_cols=72 Identities=10% Similarity=0.043 Sum_probs=36.8
Q ss_pred HHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006931 151 AEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 151 ~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
+..++..| ++|++|..| .|=....+.++...+..|+.+.... ... .......+.+...+..+.++|++...+
T Consensus 27 A~~~~~~g-~kV~lit~D-t~R~gA~eQL~~~a~~l~i~~~~~~--~~~--d~~~~~~~~~~~~~~~~~d~ilIDTaG 98 (207)
T d1okkd2 27 GRYYQNLG-KKVMFCAGD-TFRAAGGTQLSEWGKRLSIPVIQGP--EGT--DPAALAYDAVQAMKARGYDLLFVDTAG 98 (207)
T ss_dssp HHHHHTTT-CCEEEECCC-CSSTTHHHHHHHHHHHHTCCEECCC--TTC--CHHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred HHHHHHCC-CcEEEEEec-cccccchhhHhhcccccCceEEecc--CCc--cHHHHHHHHHHHHHHCCCCEEEcCccc
Confidence 33344445 467777654 3444567778777777777653211 101 011122222333344566788886554
No 94
>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Staphylococcus aureus [TaxId: 1280]}
Probab=30.77 E-value=23 Score=30.26 Aligned_cols=42 Identities=7% Similarity=0.011 Sum_probs=32.6
Q ss_pred HHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeee
Q 006931 492 IDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 541 (625)
Q Consensus 492 idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~ 541 (625)
.+.+++..++-|.+ ++++.+ .++..++.+|..|++|++..+.
T Consensus 14 ~~~~~~~~~k~Gl~--Ve~~~f------~~~~~~~~Al~~G~iD~~~~~~ 55 (255)
T d1p99a_ 14 WEKVKELAKKDDID--VEIKHF------SDYNLPNKALNDGDIDMNAFQH 55 (255)
T ss_dssp HHHHHHHHGGGTCC--EEEEEC------SSTTSHHHHHHTTSSSEEEEEE
T ss_pred HHHHHHHHHHcCCE--EEEEEc------CCchhHHHHHHcCCCCEEccCC
Confidence 34556778888888 777776 3478899999999999986543
No 95
>d2g2ca1 c.57.1.1 (A:1-163) Putative molybdenum cofactor biosynthesis protein DIP0503 {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=30.45 E-value=19 Score=28.45 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=30.9
Q ss_pred HHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006931 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 177 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
+.+.+.+++.|+++.....++.. .+.+...+++..+.++|+||..+..
T Consensus 29 ~~L~~~l~~~G~~v~~~~iv~D~----~~~i~~~~~~a~~~~~DlVittGG~ 76 (163)
T d2g2ca1 29 RLMSDELQDYSYELISEVVVPEG----YDTVVEAIATALKQGARFIITAGGT 76 (163)
T ss_dssp HHHCC----CEEEEEEEEEECSS----HHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred HHHHHHHHhCCeEEEEEEeecch----HHHHHHHHHhhhccCCCEEEecCCC
Confidence 34444456678888877777644 6777788887666678999887543
No 96
>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=30.34 E-value=61 Score=24.99 Aligned_cols=61 Identities=15% Similarity=0.027 Sum_probs=41.6
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-hhHHHHHHHHHH
Q 006931 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFDVAQR 240 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~~a~~ 240 (625)
....+...+++.|.++.....++.+ .+.+.+.+++..+ +.|+||..+.. .....+.+++.+
T Consensus 28 N~~~l~~~l~~~G~~v~~~~~v~Dd----~~~i~~~l~~~~~-~~DliittGG~s~g~~D~~~~~l~ 89 (155)
T d2ftsa3 28 NRSTLLATIQEHGYPTINLGIVGDN----PDDLLNALNEGIS-RADVIITSGGVSMGEKDYLKQVLD 89 (155)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEECSS----HHHHHHHHHHHHH-HCSEEEEESCCSSSCCHHHHHHHH
T ss_pred hHHHHHHHhcccccceEEEEEecCc----hhHHHHHHHHhhc-ccCEEEEeccccCCcchhhHHHHH
Confidence 4577888999999998877777644 7777777777653 57888886544 223345555544
No 97
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
Probab=30.30 E-value=81 Score=24.31 Aligned_cols=64 Identities=16% Similarity=0.036 Sum_probs=41.1
Q ss_pred EEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh
Q 006931 162 VIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 229 (625)
Q Consensus 162 v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~ 229 (625)
|+||.. ........+...+.+++.|+.......-.. .....+.+.+++.+..+.++||......
T Consensus 4 V~IimG-S~SD~~~~~~a~~~L~~~gi~~~~~v~SAH---rtp~rl~~~~~~~~~~~~~viIa~AG~a 67 (155)
T d1xmpa_ 4 VGVIMG-STSDWETMKYACDILDELNIPYEKKVVSAH---RTPDYMFEYAETARERGLKVIIAGAGGA 67 (155)
T ss_dssp EEEEES-SGGGHHHHHHHHHHHHHTTCCEEEEECCTT---TSHHHHHHHHHHTTTTTCCEEEEEEESS
T ss_pred EEEEEC-cHhhHHHHHHHHHHHHHcCCcEEEEEechh---cChHHHHHHHHHHHhhcceEEEeecccC
Confidence 555553 223345788888999999988665432222 2456677777877777788887765443
No 98
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=29.91 E-value=14 Score=30.02 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=25.2
Q ss_pred EEEEcCCChHHHHHHHHhhhcCCCcEEee
Q 006931 93 LAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (625)
Q Consensus 93 ~aviG~~~s~~~~~va~~~~~~~iP~Is~ 121 (625)
++++||.+|.=+.....+++.+++++|+.
T Consensus 9 IiliG~PGSGKtT~a~~La~~~g~~~is~ 37 (189)
T d2ak3a1 9 AAIMGAPGSGKGTVSSRITKHFELKHLSS 37 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHHBCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 57889999988777888999999999975
No 99
>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}
Probab=29.64 E-value=1.3e+02 Score=25.09 Aligned_cols=71 Identities=7% Similarity=0.064 Sum_probs=39.9
Q ss_pred cEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch---hhHHHHHH
Q 006931 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS---RTGLMVFD 236 (625)
Q Consensus 160 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~---~~~~~il~ 236 (625)
|||++|..-. ...-..+.+.+.+.|..|..... +.+......+++++.+.+++.+.++- +....+++
T Consensus 1 KKValITGas---~GIG~aia~~la~~Ga~V~~~~r-------~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~ 70 (255)
T d1gega_ 1 KKVALVTGAG---QGIGKAIALRLVKDGFAVAIADY-------NDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVE 70 (255)
T ss_dssp CCEEEEETTT---SHHHHHHHHHHHHTTCEEEEEES-------CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEcCCc---cHHHHHHHHHHHHCCCEEEEEEC-------CHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence 4666665322 22445566666667777665321 14455666666666666666665443 45556666
Q ss_pred HHHH
Q 006931 237 VAQR 240 (625)
Q Consensus 237 ~a~~ 240 (625)
++.+
T Consensus 71 ~~~~ 74 (255)
T d1gega_ 71 QARK 74 (255)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 100
>d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]}
Probab=29.41 E-value=70 Score=25.72 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=56.4
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006931 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 540 (625)
.++|+||+... ...-+-.+++..+.+... ++++++.. ++...+...|.+|++|+++..
T Consensus 5 sG~l~i~~~~~--------------~~~~~Lp~~l~~f~~~~P-~i~l~i~~-------~~~~~~~~~l~~g~~Di~i~~ 62 (220)
T d2fyia1 5 SGVLTIATTHT--------------QARYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIAS 62 (220)
T ss_dssp CEEEEEEECHH--------------HHHHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred CEEEEEEEEHH--------------HHHHHHHHHHHHHHHHCC-CcEEEEEE-------CCcHHHHHHHHhhhhhhhhhc
Confidence 47899999421 112334578888888764 34477766 668999999999999999864
Q ss_pred eeeecccccceEecccccccceEEEEecCC
Q 006931 541 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 570 (625)
Q Consensus 541 ~~~t~~R~~~vdfs~p~~~~~~~~lv~~~~ 570 (625)
... +..+.++ ..|+....+.+++++..
T Consensus 63 ~~~--~~~~~~~-~~~l~~~~~~~v~~~~~ 89 (220)
T d2fyia1 63 ERL--SNDPQLV-AFPWFRWHHSLLVPHDH 89 (220)
T ss_dssp SSS--TTCTTEE-EEEEEEECEEEEEETTC
T ss_pred ccc--ccccccc-ccccccccceeeccccc
Confidence 322 2223343 34677778888886544
No 101
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.26 E-value=12 Score=30.40 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=26.1
Q ss_pred cEEEEcCCChHHHHHHHHhhhcCCCcEEee
Q 006931 92 TLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (625)
Q Consensus 92 v~aviG~~~s~~~~~va~~~~~~~iP~Is~ 121 (625)
+++|+||..|.=+.....+++.+++++|+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g~~~i~~ 32 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYGYTHLSA 32 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceEcH
Confidence 578999999988777788999999999975
No 102
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=29.14 E-value=1e+02 Score=22.82 Aligned_cols=76 Identities=17% Similarity=0.091 Sum_probs=45.6
Q ss_pred EEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 006931 165 IFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 242 (625)
Q Consensus 165 i~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~g 242 (625)
|.+|+. ...+.+...+++.|..|... . +..+.++.+++..+++|++... ..+...+++..++..
T Consensus 6 iVDD~~---~~~~~l~~~L~~~g~~v~~a---~--------~~~eal~~~~~~~~dlil~D~~~p~~~G~~~~~~ir~~~ 71 (139)
T d1w25a1 6 VVDDIE---ANVRLLEAKLTAEYYEVSTA---M--------DGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDP 71 (139)
T ss_dssp EECSST---THHHHHHHHHHHTTCEEEEE---S--------SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred EEECCH---HHHHHHHHHHHHCCCEEEEE---c--------cchhhhhhhhcccceeeeeeccccCCCchHHHHHhhhcc
Confidence 444444 36788888999889876532 1 2335566666678999998743 345666777666643
Q ss_pred CCCCCeEEEeeC
Q 006931 243 MMDSGYVWIATT 254 (625)
Q Consensus 243 m~~~~~~~i~~~ 254 (625)
....-.+.+++.
T Consensus 72 ~~~~~piI~lt~ 83 (139)
T d1w25a1 72 TTRHIPVVLITA 83 (139)
T ss_dssp TTTTSCEEEEEC
T ss_pred cccCCCEEEEEc
Confidence 222222444444
No 103
>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=28.86 E-value=1.2e+02 Score=25.14 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=46.4
Q ss_pred ceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHH
Q 006931 135 FFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV 214 (625)
Q Consensus 135 ~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i 214 (625)
..+=|..+ .-++.++++.+.+-|++.+.++.-. .-..+..+.+.+.+++.|.++... ..+. .+.++....++.+
T Consensus 11 t~lVTGgs-~GIG~a~a~~la~~Ga~~vvl~~R~-~~~~~~~~~~~~~l~~~g~~v~~~-~~Dv---~d~~~~~~~~~~i 84 (259)
T d2fr1a1 11 TVLVTGGT-GGVGGQIARWLARRGAPHLLLVSRS-GPDADGAGELVAELEALGARTTVA-ACDV---TDRESVRELLGGI 84 (259)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHHTCSEEEEEESS-GGGSTTHHHHHHHHHHTTCEEEEE-ECCT---TCHHHHHHHHHTS
T ss_pred EEEEECCC-cHHHHHHHHHHHHCCCCEEEEEeCC-ccCHHHHHHHHHHHHhcccccccc-cccc---chHHHHHHhhccc
Confidence 34444443 4578999999988899888766532 112234666666677777766543 2332 2355666666666
Q ss_pred hcC
Q 006931 215 RMM 217 (625)
Q Consensus 215 ~~~ 217 (625)
++.
T Consensus 85 ~~~ 87 (259)
T d2fr1a1 85 GDD 87 (259)
T ss_dssp CTT
T ss_pred ccc
Confidence 543
No 104
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}
Probab=28.44 E-value=23 Score=28.21 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhc--CcEEEEcCCCh--HHHHHHHHhhhcCCCcEEee
Q 006931 78 FLSIMGALQFMET--DTLAIVGPQSA--VMAHVLSHLANELQVPLLSF 121 (625)
Q Consensus 78 ~~a~~~~~~l~~~--~v~aviG~~~s--~~~~~va~~~~~~~iP~Is~ 121 (625)
...++.+.+++.+ +.+.++|.... .....+..+++.+++|+++.
T Consensus 6 ~~~l~~a~~~L~~A~rPvii~G~g~~~~~a~~~l~~lae~~~iPv~~t 53 (175)
T d2ji7a1 6 EDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPM 53 (175)
T ss_dssp HHHHHHHHHHHHTCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCccccccHHHHHHHhhhceeeeecc
Confidence 4467777788865 88899986443 45678899999999999974
No 105
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=28.42 E-value=98 Score=22.26 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=48.4
Q ss_pred cEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch--hhHHHHHHH
Q 006931 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDV 237 (625)
Q Consensus 160 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~--~~~~~il~~ 237 (625)
++| +|.+|+. ...+.+...+++.|..|... . +..+.++.+++..+++|++...- .+...++++
T Consensus 3 krI-LiVDDd~---~~~~~l~~~L~~~g~~v~~a---~--------~~~~al~~l~~~~~dlillD~~mp~~~G~~~~~~ 67 (121)
T d1mvoa_ 3 KKI-LVVDDEE---SIVTLLQYNLERSGYDVITA---S--------DGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQ 67 (121)
T ss_dssp CEE-EEECSCH---HHHHHHHHHHHHTTCEEEEE---S--------SHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHH
T ss_pred CCE-EEEECCH---HHHHHHHHHHHHCCCEEEEE---C--------CHHHHHHHHhcccccEEEecccccCCCCchhhhh
Confidence 355 4445543 46788889999999887632 1 22345666666789999997443 456677777
Q ss_pred HHHcCCCCCCeEEEeeC
Q 006931 238 AQRLGMMDSGYVWIATT 254 (625)
Q Consensus 238 a~~~gm~~~~~~~i~~~ 254 (625)
.++.+- ...+.+.+.
T Consensus 68 ~r~~~~--~~~ii~lt~ 82 (121)
T d1mvoa_ 68 LRQQKL--MFPILMLTA 82 (121)
T ss_dssp HHHTTC--CCCEEEEEC
T ss_pred hhccCC--CCEEEEEEe
Confidence 776552 233444443
No 106
>d1otha1 c.78.1.1 (A:34-184) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.26 E-value=1.1e+02 Score=23.43 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=48.9
Q ss_pred eEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCChHH
Q 006931 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVM 103 (625)
Q Consensus 26 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~--~v~aviG~~~s~~ 103 (625)
.-.++.+|...+ .+.+.+|+.|+.++ +|..+.+...++.-...+.+.-+.+.++. .++++-.+..
T Consensus 46 gk~v~llF~epS---tRTR~SFe~A~~~L-------Gg~~i~l~~~~s~~~kgEs~~Dt~~~ls~~~D~ivir~~~~--- 112 (151)
T d1otha1 46 GKSLGMIFEKRS---TRTRLSTETGFALL-------GGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQ--- 112 (151)
T ss_dssp TCEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEETTTSCBTTTBCHHHHHHHHHHHCSEEEEECSCH---
T ss_pred CcEEEEEecCCc---hhhHHHHHHHHHhh-------ccceeecCCcccccccccchhHHHHHHHhcCCeEEEEeccc---
Confidence 346888888765 37899999999995 45556554444432222333334444443 4455555432
Q ss_pred HHHHHHhhhcCCCcEEe
Q 006931 104 AHVLSHLANELQVPLLS 120 (625)
Q Consensus 104 ~~~va~~~~~~~iP~Is 120 (625)
..+..++....+|+|.
T Consensus 113 -~~~~~~a~~~~~PvIN 128 (151)
T d1otha1 113 -SDLDTLAKEASIPIIN 128 (151)
T ss_dssp -HHHHHHHHHCSSCEEE
T ss_pred -ccccccccccCccEEe
Confidence 3356667778899997
No 107
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.06 E-value=1.1e+02 Score=23.47 Aligned_cols=75 Identities=13% Similarity=0.246 Sum_probs=51.2
Q ss_pred cCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCc
Q 006931 140 APNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEA 219 (625)
Q Consensus 140 ~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 219 (625)
..++..-.+.+.+++++...+++.|.+ +. ....+.+.+.+...|+.+... ... .+..+-...++..+....
T Consensus 8 v~~~e~K~~~L~~ll~~~~~~k~iIF~-~s---~~~~~~l~~~L~~~~~~~~~~---~~~--~~~~~r~~~l~~f~~~~~ 78 (162)
T d1fuka_ 8 VEEEEYKYECLTDLYDSISVTQAVIFC-NT---RRKVEELTTKLRNDKFTVSAI---YSD--LPQQERDTIMKEFRSGSS 78 (162)
T ss_dssp EESGGGHHHHHHHHHHHTTCSCEEEEE-SS---HHHHHHHHHHHHHTTCCEEEE---CTT--SCHHHHHHHHHHHHTTSC
T ss_pred eCCcHHHHHHHHHHHHhCCCCcEEEEE-EE---EchHHHHHHHHhhcCceEEEe---ccC--CchhhHHHHHHHHhhccc
Confidence 345555678899999998888865444 43 346788888898888876542 222 235566677888887766
Q ss_pred eEEE
Q 006931 220 RVIV 223 (625)
Q Consensus 220 ~vIv 223 (625)
+++|
T Consensus 79 ~iLv 82 (162)
T d1fuka_ 79 RILI 82 (162)
T ss_dssp SEEE
T ss_pred ceee
Confidence 6554
No 108
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.82 E-value=43 Score=27.37 Aligned_cols=78 Identities=14% Similarity=0.064 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEE
Q 006931 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 225 (625)
Q Consensus 146 ~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~ 225 (625)
.+..+.+.|..-|.+=++|+...+..+.. ..+.....+.++.+.....+... .....+.++.+++.++|++|+.
T Consensus 11 ~~~~~l~~L~~~~~~i~~V~t~p~~~~~~--~~v~~~a~~~~ipv~~~~~~~~~----~~~~~~~~~~l~~~~~Dliv~~ 84 (203)
T d2bw0a2 11 FGQEVYCHLRKEGHEVVGVFTVPDKDGKA--DPLGLEAEKDGVPVFKYSRWRAK----GQALPDVVAKYQALGAELNVLP 84 (203)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCCCSSCC--CHHHHHHHHHTCCEEECSCCEET----TEECHHHHHHHHTTCCSEEEES
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCcCcCC--ChhhhhHHhcCCccccccccccc----ccccHHHHHHHHHhCCCceEEe
Confidence 44555555556677777777654433322 33555667778776432222111 1122345677778889999998
Q ss_pred cchh
Q 006931 226 GYSR 229 (625)
Q Consensus 226 ~~~~ 229 (625)
+...
T Consensus 85 ~~~~ 88 (203)
T d2bw0a2 85 FCSQ 88 (203)
T ss_dssp SCSS
T ss_pred ecch
Confidence 7764
No 109
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=27.78 E-value=46 Score=28.94 Aligned_cols=43 Identities=2% Similarity=-0.077 Sum_probs=27.9
Q ss_pred HHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 006931 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (625)
Q Consensus 182 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 226 (625)
..++.|+.+.... ..+...+..++..+.+.|++.+.++|+.-.
T Consensus 203 f~~~ygl~~~~~~--~~~~eps~~~l~~l~~~ik~~~i~~if~e~ 245 (289)
T d1pq4a_ 203 FARDYNLVQIPIE--VEGQEPSAQELKQLIDTAKENNLTMVFGET 245 (289)
T ss_dssp HHHHTTCEEEESC--BTTBCCCHHHHHHHHHHHHTTTCCEEEEET
T ss_pred HHHhcCceeeeee--ccCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3445677665443 222234577888888888888888887754
No 110
>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}
Probab=27.72 E-value=31 Score=26.49 Aligned_cols=33 Identities=6% Similarity=0.271 Sum_probs=22.8
Q ss_pred EEEEEEe-cCCCCcchHHHHHHHHhccceEEEEe
Q 006931 161 EVIAIFN-DDDQGRNGVTALGDKLAEIRCKISYK 193 (625)
Q Consensus 161 ~v~ii~~-d~~~g~~~~~~l~~~l~~~g~~v~~~ 193 (625)
+|.|+|. ..-..+..++.+.+.+++.|+++...
T Consensus 2 kv~I~Y~S~tG~te~~A~~i~~~l~~~g~~v~~~ 35 (147)
T d1f4pa_ 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSR 35 (147)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEEECCChhHHHHHHHHHHHHHHCCCeEEEE
Confidence 5777884 23333466788888999999887643
No 111
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.45 E-value=1.1e+02 Score=23.40 Aligned_cols=84 Identities=17% Similarity=0.085 Sum_probs=52.5
Q ss_pred EEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch----hhHHHHHH
Q 006931 161 EVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMVFD 236 (625)
Q Consensus 161 ~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~----~~~~~il~ 236 (625)
+|.+-+...+.-.-+..-+...++..|++|.+- -.. ...+ ..++.+++.++++|-+.+.. ..+..+.+
T Consensus 8 kivi~tv~gD~HdiG~~iv~~~l~~~G~~Vi~L---G~~--~p~e---~~~~~~~~~~~d~i~lS~l~~~~~~~~~~~~~ 79 (156)
T d3bula2 8 KMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDL---GVM--VPAE---KILRTAKEVNADLIGLSGLITPSLDEMVNVAK 79 (156)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEEC---CSS--BCHH---HHHHHHHHHTCSEEEEECCSTHHHHHHHHHHH
T ss_pred EEEEEeeCCChhhHHHHHHHHHHHHCCCEEEEC---CCC--CCHH---HHHHHHHhhCCCEEEEecccccchHHHHHHHH
Confidence 455555555555566788888999999998742 211 2233 45556666779999987655 34556667
Q ss_pred HHHHcCCCCCCeEEEeeC
Q 006931 237 VAQRLGMMDSGYVWIATT 254 (625)
Q Consensus 237 ~a~~~gm~~~~~~~i~~~ 254 (625)
..++.|+. ..+++...
T Consensus 80 ~l~~~g~~--~~vivGG~ 95 (156)
T d3bula2 80 EMERQGFT--IPLLIGGA 95 (156)
T ss_dssp HHHHTTCC--SCEEEEST
T ss_pred HHHhcccc--ceEEEecc
Confidence 77777753 34555543
No 112
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
Probab=27.18 E-value=80 Score=24.48 Aligned_cols=65 Identities=11% Similarity=-0.022 Sum_probs=41.2
Q ss_pred EEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchh
Q 006931 161 EVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 229 (625)
Q Consensus 161 ~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~ 229 (625)
+|+||... .......+...+.+++.|+.......-.. .....+.+.+++....+.++||.....+
T Consensus 4 ~V~IimGS-~SD~~v~~~a~~~L~~~gI~~e~~v~SAH---R~p~~l~~~~~~~e~~~~~viIa~AG~a 68 (159)
T d1u11a_ 4 VVGIIMGS-QSDWETMRHADALLTELEIPHETLIVSAH---RTPDRLADYARTAAERGLNVIIAGAGGA 68 (159)
T ss_dssp SEEEEESS-GGGHHHHHHHHHHHHHTTCCEEEEECCTT---TCHHHHHHHHHHTTTTTCCEEEEEEESS
T ss_pred eEEEEeCC-HhhHHHHHHHHHHHHHhCCceEEEEehHh---hChHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 47777643 22345678888889999987654332222 2355666777777767788888765443
No 113
>d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli [TaxId: 562]}
Probab=27.04 E-value=1.2e+02 Score=22.94 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=40.1
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch-----hhHHHHHHH
Q 006931 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-----RTGLMVFDV 237 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-----~~~~~il~~ 237 (625)
....+...+++.|+++.....++.+ .+.+...+++..+ ++|+||+.+.. +.....+++
T Consensus 28 N~~~l~~~l~~~G~~v~~~~~v~Dd----~~~i~~~l~~~~~-~~DivittGG~s~g~~D~~~~~l~~ 90 (149)
T d2nqra3 28 NRLAVHLMLEQLGCEVINLGIIRDD----PHALRAAFIEADS-QADVVISSGGVSVGEADYTKTILEE 90 (149)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSS----HHHHHHHHHHHHH-HCSEEEECSSSCSSSCSHHHHHHHH
T ss_pred chHHHHhhhhhcceEEEEccccCCh----HHHHHHHHHhccc-ccCEEEEcCCccCCchHHHHHHHHH
Confidence 4667888889999998877777643 6777777777653 47888886543 344444443
No 114
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=26.63 E-value=1.1e+02 Score=22.11 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=45.0
Q ss_pred EEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc--chhhHHHHHHHHHHc
Q 006931 164 AIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG--YSRTGLMVFDVAQRL 241 (625)
Q Consensus 164 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~--~~~~~~~il~~a~~~ 241 (625)
+|.+|+. ...+.+.+.+++.|..|... . +..+.++.+++..+++|++.. ...+...++++.++.
T Consensus 5 LiVDD~~---~~~~~l~~~L~~~g~~v~~a---~--------~~~eal~~~~~~~~dlvl~D~~mP~~~G~el~~~ir~~ 70 (121)
T d1ys7a2 5 LVVDDDS---DVLASLERGLRLSGFEVATA---V--------DGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAM 70 (121)
T ss_dssp EEECSCH---HHHHHHHHHHHHTTCEEEEE---S--------SHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred EEEECCH---HHHHHHHHHHHHCCCEEEEE---C--------CHHHHHHHHHhCCCCEEEEEeeccCcccHHHHHHHHhc
Confidence 3444443 36788889999999877532 1 234566777778899999974 445678888888876
Q ss_pred C
Q 006931 242 G 242 (625)
Q Consensus 242 g 242 (625)
+
T Consensus 71 ~ 71 (121)
T d1ys7a2 71 D 71 (121)
T ss_dssp T
T ss_pred C
Confidence 5
No 115
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Probab=26.63 E-value=1.1e+02 Score=22.25 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=34.9
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc--chhhHHHHHHHHHHcC
Q 006931 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG--YSRTGLMVFDVAQRLG 242 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~--~~~~~~~il~~a~~~g 242 (625)
..+.++..+++.|...+. . ..+..+.++.+++..+++|++.. +..+...++++.++..
T Consensus 16 ~r~~i~~~L~~~g~~~v~--~--------a~~g~~a~~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~ 75 (128)
T d1jbea_ 16 MRRIVRNLLKELGFNNVE--E--------AEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADG 75 (128)
T ss_dssp HHHHHHHHHHHTTCCCEE--E--------ESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--
T ss_pred HHHHHHHHHHHCCCcEEE--E--------ecCchHHHHHHhcCCCCEEEEecccccCCHHHHHHHHHhCc
Confidence 566677777777764211 1 11234556677777888888864 3456777777776543
No 116
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}
Probab=26.31 E-value=16 Score=29.35 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=25.1
Q ss_pred EEEEcCCChHHHHHHHHhhhcCCCcEEee
Q 006931 93 LAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (625)
Q Consensus 93 ~aviG~~~s~~~~~va~~~~~~~iP~Is~ 121 (625)
++++||..|.=+.....+++.+++++|+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g~~~is~ 31 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYGTPHIST 31 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCceeeH
Confidence 57899999987777788999999999974
No 117
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=26.12 E-value=59 Score=27.43 Aligned_cols=77 Identities=12% Similarity=-0.010 Sum_probs=49.2
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 006931 160 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237 (625)
Q Consensus 160 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~ 237 (625)
+.|++|..+ +.|.....+.+++.+++.|..+..... . .+...-...+..+...+.+.+++......-. ....
T Consensus 4 ~tIgvvvp~l~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~e~~~i~~~~~~~vdgii~~~~~~~~~-~~~~ 77 (275)
T d2nzug1 4 TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNS---D--QNQDKELHLLNNMLGKQVDGIIFMSGNVTEE-HVEE 77 (275)
T ss_dssp SEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHTTCCSEEEECCSCCCHH-HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEC---C--CCHHHHHHHHHHHHhcCCceeeccccchhhH-HHHH
Confidence 568888864 445567788899999999988764321 1 2344556677777778888888765443322 2334
Q ss_pred HHHcC
Q 006931 238 AQRLG 242 (625)
Q Consensus 238 a~~~g 242 (625)
+.+.+
T Consensus 78 l~~~~ 82 (275)
T d2nzug1 78 LKKSP 82 (275)
T ss_dssp HHHCS
T ss_pred Hhhcc
Confidence 44544
No 118
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=25.92 E-value=1.2e+02 Score=22.48 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=38.7
Q ss_pred chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 006931 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 242 (625)
Q Consensus 174 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~g 242 (625)
...+.+...+++.|..+... . +....+..+++..+++|++... ..+...+++++++.+
T Consensus 11 ~~~~~l~~~L~~~g~~v~~~---~--------~~~~al~~l~~~~~dlil~D~~mP~~~G~el~~~lr~~~ 70 (140)
T d1qkka_ 11 DLRKAMQQTLELAGFTVSSF---A--------SATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALD 70 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S--------CHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEEe---C--------ChHHHHHHHhccCcchHHHhhccCCCCHHHHHHHHHHhC
Confidence 36777888888888776532 1 2335666677778888888643 346667777777654
No 119
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=25.81 E-value=1.6e+02 Score=23.87 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=39.3
Q ss_pred HHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHH----HHHhcCCceEEEEEc
Q 006931 151 AEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNEL----VKVRMMEARVIVVHG 226 (625)
Q Consensus 151 ~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l----~~i~~~~~~vIvl~~ 226 (625)
+..+.+.| ++|++|..|. |=....+.++...+..|+.+.. ... ..+....+ ..-+..+.++|++..
T Consensus 32 Aa~~~~~~-~kV~lit~Dt-~R~gA~eQL~~~a~~l~i~~~~---~~~-----~~d~~~~~~~~~~~~~~~~~d~ilIDT 101 (213)
T d1vmaa2 32 AKMFVDEG-KSVVLAAADT-FRAAAIEQLKIWGERVGATVIS---HSE-----GADPAAVAFDAVAHALARNKDVVIIDT 101 (213)
T ss_dssp HHHHHHTT-CCEEEEEECT-TCHHHHHHHHHHHHHHTCEEEC---CST-----TCCHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHCC-CceEEEeecc-cccchhHHHHHHhhhcCccccc---cCC-----CCcHHHHHHHHHHHHHHcCCCEEEEec
Confidence 33344445 5698888664 4445678888888888877642 111 12222222 222235678899886
Q ss_pred ch
Q 006931 227 YS 228 (625)
Q Consensus 227 ~~ 228 (625)
.+
T Consensus 102 aG 103 (213)
T d1vmaa2 102 AG 103 (213)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 120
>d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]}
Probab=25.79 E-value=63 Score=25.59 Aligned_cols=81 Identities=14% Similarity=0.184 Sum_probs=50.6
Q ss_pred ceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEeee
Q 006931 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 541 (625)
Q Consensus 462 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~ 541 (625)
++||||+.. .. ...+-.+++..+.++.. ++++++.. ++...++..+.+|++|+++...
T Consensus 5 G~lrig~~~--~~------------~~~~lp~~l~~f~~~~P-~v~l~i~~-------~~~~~~~~~l~~~~~d~~~~~~ 62 (212)
T d1i6aa_ 5 GPLHIGLIP--TV------------GPYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILAL 62 (212)
T ss_dssp EEEEEEECT--TT------------HHHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEEC
T ss_pred EEEEEEeEH--HH------------HHHHHHHHHHHHHHHCC-CcEEEEEE-------CCCccccccccccchhhhheec
Confidence 689999952 11 12345577888877764 23366665 5688999999999999997654
Q ss_pred eeecccccceEecccccccceEEEEec
Q 006931 542 AIVTNRTKAVDFTQPYIESGLVVVAPV 568 (625)
Q Consensus 542 ~~t~~R~~~vdfs~p~~~~~~~~lv~~ 568 (625)
. .....+.+. +.......+++++
T Consensus 63 ~---~~~~~~~~~-~l~~~~~~~~~~~ 85 (212)
T d1i6aa_ 63 V---KESEAFIEV-PLFDEPMLLAIYE 85 (212)
T ss_dssp C---GGGTTSEEE-EEEEEEEEEEEET
T ss_pred c---cccccccce-eccccceEEEeec
Confidence 3 233334443 3334445555543
No 121
>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=25.10 E-value=90 Score=21.35 Aligned_cols=73 Identities=14% Similarity=-0.025 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc
Q 006931 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (625)
Q Consensus 147 ~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 226 (625)
+-++|.++++.|+.--+ +|-.. ....+.|++.|+.+... .. ..+ + .+++.||...
T Consensus 14 Ms~LA~~L~~~G~~VsG---SD~~~-----~~~t~~L~~~Gi~i~~g--h~------~~~-------i--~~~d~vV~Ss 68 (89)
T d1j6ua1 14 MSAVALHEFSNGNDVYG---SNIEE-----TERTAYLRKLGIPIFVP--HS------ADN-------W--YDPDLVIKTP 68 (89)
T ss_dssp HHHHHHHHHHTTCEEEE---ECSSC-----CHHHHHHHHTTCCEESS--CC------TTS-------C--CCCSEEEECT
T ss_pred HHHHHHHHHhCCCeEEE---EeCCC-----ChhHHHHHHCCCeEEee--ec------ccc-------c--CCCCEEEEec
Confidence 56788999999984332 44332 23445688889876421 11 111 1 2467776654
Q ss_pred chhhHHHHHHHHHHcCCC
Q 006931 227 YSRTGLMVFDVAQRLGMM 244 (625)
Q Consensus 227 ~~~~~~~il~~a~~~gm~ 244 (625)
.-..-...+.+|++.|++
T Consensus 69 AI~~~npel~~A~~~gIp 86 (89)
T d1j6ua1 69 AVRDDNPEIVRARMERVP 86 (89)
T ss_dssp TCCTTCHHHHHHHHTTCC
T ss_pred CcCCCCHHHHHHHHcCCC
Confidence 444445668888888864
No 122
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.02 E-value=1.3e+02 Score=23.30 Aligned_cols=72 Identities=17% Similarity=0.274 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEE
Q 006931 144 LYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIV 223 (625)
Q Consensus 144 ~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIv 223 (625)
..-..++.++++.....++. |+.+. ....+.+...|...|..+.. +..+ .+..+-...+++.+....+++|
T Consensus 17 ~~K~~~L~~ll~~~~~~k~i-VF~~~---~~~~~~l~~~L~~~g~~~~~---~h~~--~~~~~r~~~~~~f~~~~~~ilv 87 (171)
T d1s2ma2 17 RQKLHCLNTLFSKLQINQAI-IFCNS---TNRVELLAKKITDLGYSCYY---SHAR--MKQQERNKVFHEFRQGKVRTLV 87 (171)
T ss_dssp GGHHHHHHHHHHHSCCSEEE-EECSS---HHHHHHHHHHHHHHTCCEEE---ECTT--SCHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHHHHHHHHhCCCCceE-EEEee---eehhhHhHHhhhcccccccc---cccc--cchhhhhhhhhhcccCcccccc
Confidence 44578899999998888875 44443 34678888888888887653 3322 2355666777888776666555
Q ss_pred E
Q 006931 224 V 224 (625)
Q Consensus 224 l 224 (625)
.
T Consensus 88 ~ 88 (171)
T d1s2ma2 88 C 88 (171)
T ss_dssp E
T ss_pred c
Confidence 3
No 123
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.86 E-value=1.1e+02 Score=21.82 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=40.8
Q ss_pred EEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc--chhhHHHHHHHHHHc
Q 006931 164 AIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG--YSRTGLMVFDVAQRL 241 (625)
Q Consensus 164 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~--~~~~~~~il~~a~~~ 241 (625)
+|.+|+. ...+.+...+++.|.++... . +..+.++.+++..+++|++.. +..+...++++.++.
T Consensus 4 LiVDDd~---~~~~~l~~~L~~~g~~v~~a---~--------~~~eal~~l~~~~~dliilD~~mP~~~G~e~~~~ir~~ 69 (119)
T d1zh2a1 4 LIVEDEQ---AIRRFLRTALEGDGMRVFEA---E--------TLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQW 69 (119)
T ss_dssp EEECSCH---HHHHHHHHHHHTTTCEEEEE---S--------SHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTT
T ss_pred EEEECCH---HHHHHHHHHHHHCCCEEEEe---C--------CHHHHHHHHHhcCCCEEEeccccCCCCCchHHHHHHhc
Confidence 3444443 36777888888888876532 1 233456666667899999863 344566777777653
No 124
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=24.69 E-value=1.8e+02 Score=23.91 Aligned_cols=96 Identities=13% Similarity=0.121 Sum_probs=57.7
Q ss_pred HHHHhhhcCCCcEEeeccCCCCCCCCCCCceEEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhc
Q 006931 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAE 185 (625)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~ 185 (625)
.+...++..+||++..... +......+.+..+++..+-+-++ ..+-+.........+..++
T Consensus 53 ll~~qAealgiPl~~~~~~----------------~~~e~~~~~l~~~l~~~~v~~vv---~Gdi~~~~~r~r~e~~c~~ 113 (226)
T d2d13a1 53 LTSLQARALGIPIIKGFTK----------------GEKEKEVEDLKNVLEGLKVDGIV---AGALASRYQKERIENVARE 113 (226)
T ss_dssp THHHHHHHHTCCEEEEEC------------------CTTSHHHHHHHHHHTBCCSEEE---CCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEecC----------------CcchHHHHHHHHHHHhcCccceE---ecceecHHHHHHHHhhHHh
Confidence 3455667788998753211 12233456677778888766543 2444444456677777777
Q ss_pred cceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006931 186 IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 186 ~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
.|+... .|.. ..+-...++++-+.+-++||+...+
T Consensus 114 ~gl~~~----~PLW----~~d~~~ll~e~i~~G~~aii~~v~~ 148 (226)
T d2d13a1 114 LGLKVY----TPAW----EKDPYQYMLEIIKLGFKVVFVAVSA 148 (226)
T ss_dssp HTCEEE----CTTT----TCCHHHHHHHHHHTTCEEEEEEECS
T ss_pred cCcEEE----eccc----CCCHHHHHHHHHHCCCcEEEEEEcc
Confidence 788765 3433 2334556777777788877776554
No 125
>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}
Probab=24.67 E-value=1.7e+02 Score=24.57 Aligned_cols=86 Identities=15% Similarity=0.054 Sum_probs=58.8
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc-
Q 006931 149 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY- 227 (625)
Q Consensus 149 al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~- 227 (625)
.+++.....|-.-+++++ |..|.....+.+...-+...+.|....-+- . . -++.+.+..+++.|++...
T Consensus 69 ~~A~~y~~~GA~aiSVLT-e~~~F~Gs~~dl~~v~~~~~iPvLrKDFIi-d------~--~QI~ea~~~GADaVLLIaal 138 (254)
T d1vc4a_ 69 EAALAYARGGARAVSVLT-EPHRFGGSLLDLKRVREAVDLPLLRKDFVV-D------P--FMLEEARAFGASAALLIVAL 138 (254)
T ss_dssp HHHHHHHHTTCSEEEEEC-CCSSSCCCHHHHHHHHHHCCSCEEEESCCC-S------H--HHHHHHHHTTCSEEEEEHHH
T ss_pred HHHHHHHhcCCceEEEEc-CcccccccHHHHHHHHHHcCCCcccCCccc-c------H--HHHHHHHhccchHHHHHHHH
Confidence 456777888999999887 445555677777766555566665443222 1 1 2455667789998887643
Q ss_pred -hhhHHHHHHHHHHcCCC
Q 006931 228 -SRTGLMVFDVAQRLGMM 244 (625)
Q Consensus 228 -~~~~~~il~~a~~~gm~ 244 (625)
......++..|..+||.
T Consensus 139 l~~~l~~l~~~A~~lgl~ 156 (254)
T d1vc4a_ 139 LGELTGAYLEEARRLGLE 156 (254)
T ss_dssp HGGGHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHhCCc
Confidence 35667888999999985
No 126
>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}
Probab=24.59 E-value=1.3e+02 Score=22.27 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=20.1
Q ss_pred eEEEEEcchhhHHHHHHHHHHcCCCC
Q 006931 220 RVIVVHGYSRTGLMVFDVAQRLGMMD 245 (625)
Q Consensus 220 ~vIvl~~~~~~~~~il~~a~~~gm~~ 245 (625)
..|++|+++..+..+.+.+.++|+..
T Consensus 102 ~~vyiCGp~~m~~~v~~~l~~~Gv~~ 127 (141)
T d1tvca2 102 PDIYLCGPPGMIDAACELVRSRGIPG 127 (141)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHCCCC
T ss_pred ceeeccCCHHHHHHHHHHHHHcCCCH
Confidence 34778898888888888888888753
No 127
>d2esna2 c.94.1.1 (A:92-303) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.51 E-value=46 Score=26.55 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=41.3
Q ss_pred CceEEEEecCCCCccccEEeeCCcceeeeeeHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006931 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 461 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 540 (625)
.+++|||+... -...+-..++.++.+... ++++++.. +..+.++..|.+|++|++++.
T Consensus 7 ~~~~rI~~~~~--------------~~~~~lp~ll~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 64 (212)
T d2esna2 7 QRTFVFAATDY--------------TAFALLPPLMNRLQHSAP-GVRLRLVN-------AERKLSVEALASGRIDFALGY 64 (212)
T ss_dssp CCEEEEECCHH--------------HHHHHHHHHHHHHHHHST-TCEEEEEC-------CSSSCCHHHHHHTSSSEEEEC
T ss_pred CcEEEEEEcHH--------------HHHHHHHHHHHHHHHHCC-CcEEEEEe-------cCcHHHHHHHHHhcccccccc
Confidence 58899998421 112344577888888763 33377766 446789999999999999874
Q ss_pred e
Q 006931 541 I 541 (625)
Q Consensus 541 ~ 541 (625)
.
T Consensus 65 ~ 65 (212)
T d2esna2 65 D 65 (212)
T ss_dssp C
T ss_pred c
Confidence 3
No 128
>d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.41 E-value=2.1e+02 Score=24.61 Aligned_cols=96 Identities=8% Similarity=0.068 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceE
Q 006931 142 NDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARV 221 (625)
Q Consensus 142 s~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~v 221 (625)
+...+.+-+.+++.+|- |++-.|.+.++-.+.+.+..++.|..++....+. ++...+-+.++...++.
T Consensus 133 s~~elid~y~~li~~YP-----IisIEDp~~e~D~~gw~~lt~~~g~~iVGDDl~~-------Tn~~rl~~~i~~~~~na 200 (295)
T d2al1a1 133 TGPQLADLYHSLMKRYP-----IVSIEDPFAEDDWEAWSHFFKTAGIQIVADDLTV-------TNPKRIATAIEKKAADA 200 (295)
T ss_dssp CHHHHHHHHHHHHHHSC-----EEEEECCSCTTCHHHHHHHHTTCCSEEEESTTTT-------TCHHHHHHHHHTTCCSE
T ss_pred chHHHHHHHHHHHHhCC-----EEEecCCcCccchHHHHHHhhccCceeecchhhc-------ccchhhhcchhhhcccc
Confidence 45667888899999998 4455777888888888888888887776544333 23334445566666778
Q ss_pred EEEE----cchhhHHHHHHHHHHcCCCCCCeEEEeeC
Q 006931 222 IVVH----GYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (625)
Q Consensus 222 Ivl~----~~~~~~~~il~~a~~~gm~~~~~~~i~~~ 254 (625)
|++= +.-.++...++.|++.| +.-|.+.
T Consensus 201 iliK~NQiGTvtEt~ea~~la~~~g-----~~~ivSh 232 (295)
T d2al1a1 201 LLLKVNQIGTLSESIKAAQDSFAAG-----WGVMVSH 232 (295)
T ss_dssp EEECHHHHCCHHHHHHHHHHHHHTT-----CEEEEEC
T ss_pred eeecccchhhHHHHHHHHHHHHhcC-----Ceeeccc
Confidence 8873 44467777777887755 3455554
No 129
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=23.79 E-value=91 Score=23.71 Aligned_cols=69 Identities=12% Similarity=0.200 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEE
Q 006931 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIV 223 (625)
Q Consensus 145 ~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIv 223 (625)
.-.+++.+++++.+++ +||+.+.. ...+.+.+.+++.|+.+.. +... ....+-...+++.+....+++|
T Consensus 15 ~K~~~L~~ll~~~~~k--~IIF~~s~---~~~~~l~~~L~~~g~~~~~---~~~~--~~~~~r~~~~~~f~~~~~~ilv 83 (155)
T d1hv8a2 15 ERFEALCRLLKNKEFY--GLVFCKTK---RDTKELASMLRDIGFKAGA---IHGD--LSQSQREKVIRLFKQKKIRILI 83 (155)
T ss_dssp GHHHHHHHHHCSTTCC--EEEECSSH---HHHHHHHHHHHHTTCCEEE---ECSS--SCHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHHHHHHccCCCC--EEEEECch---HHHHHHHhhhccccccccc---cccc--chhhhhhhhhhhhhcccceeee
Confidence 3467889999888876 45665542 4678888889888887653 3322 2355667778888776666544
No 130
>d1pvva1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=23.79 E-value=1.1e+02 Score=23.31 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=49.0
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCc--EEEEcCCChHHH
Q 006931 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDT--LAIVGPQSAVMA 104 (625)
Q Consensus 27 i~IG~i~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~~v--~aviG~~~s~~~ 104 (625)
-.++.+|...+ .+.+.+|+.|+.++ ++..+.+...++.-.-.+.++-+.+.++.-. +++-.+. .
T Consensus 46 k~~~~lF~epS---TRTR~SFe~A~~~L-------G~~~i~~~~~~ss~~kgEs~~Dt~~~ls~~~D~iv~R~~~----~ 111 (150)
T d1pvva1 46 KTLAMIFQKPS---TRTRVSFEVAMAHL-------GGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYD----H 111 (150)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TSEEEEEEGGGSTTTTTCCHHHHHHHHTTTCSEEEEECSS----H
T ss_pred CeeEEEeecCC---cchHHHHHHHHHhc-------CCceEecCccccccccCCCHHHHHHHHHcCCCeeeeeccC----h
Confidence 36888888765 37899999999985 2444444444443333444555556666533 3333332 2
Q ss_pred HHHHHhhhcCCCcEEe
Q 006931 105 HVLSHLANELQVPLLS 120 (625)
Q Consensus 105 ~~va~~~~~~~iP~Is 120 (625)
..+..+++...+|+|.
T Consensus 112 ~~~~~~a~~~~~pvIN 127 (150)
T d1pvva1 112 KDVEDLAKYATVPVIN 127 (150)
T ss_dssp HHHHHHHHHCSSCEEE
T ss_pred hHHHHHHHhcCCCEEe
Confidence 3456677778999997
No 131
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.78 E-value=1.2e+02 Score=23.49 Aligned_cols=78 Identities=14% Similarity=0.269 Sum_probs=50.5
Q ss_pred EEccCchHHHHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhc
Q 006931 137 VQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM 216 (625)
Q Consensus 137 ~r~~ps~~~~~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~ 216 (625)
|-..+++..-..++.+++++..-.++ +|+.+.. ...+.+.+.++..|..+.. +... ....+-...+++.++
T Consensus 12 ~v~v~~~~~K~~~L~~ll~~~~~~k~-iiF~~~~---~~~~~~~~~l~~~~~~~~~---~~~~--~~~~~r~~~~~~fk~ 82 (168)
T d2j0sa2 12 FVAVEREEWKFDTLCDLYDTLTITQA-VIFCNTK---RKVDWLTEKMREANFTVSS---MHGD--MPQKERESIMKEFRS 82 (168)
T ss_dssp EEEESSTTHHHHHHHHHHHHHTSSEE-EEECSSH---HHHHHHHHHHHHTTCCCEE---ECTT--SCHHHHHHHHHHHHH
T ss_pred EEEecChHHHHHHHHHHHHhCCCCce-EEEeeeH---HHHHHHHHHhhhcccchhh---hhhh--hhHHHHHHHHHHHhc
Confidence 34456666567889999988877775 4554442 4578888888888876542 2222 235566677777877
Q ss_pred CCceEEE
Q 006931 217 MEARVIV 223 (625)
Q Consensus 217 ~~~~vIv 223 (625)
...+++|
T Consensus 83 g~~~iLv 89 (168)
T d2j0sa2 83 GASRVLI 89 (168)
T ss_dssp TSSCEEE
T ss_pred CCccEEe
Confidence 6666544
No 132
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=23.62 E-value=1.3e+02 Score=22.12 Aligned_cols=58 Identities=10% Similarity=0.005 Sum_probs=38.7
Q ss_pred chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEE--cchhhHHHHHHHHHHcC
Q 006931 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH--GYSRTGLMVFDVAQRLG 242 (625)
Q Consensus 174 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~--~~~~~~~~il~~a~~~g 242 (625)
...+.+...++..|.+|... . +....+..+++..+++|++. .+..+...++++.++.+
T Consensus 11 ~~~~~l~~~L~~~g~~v~~a---~--------~~~eAl~~l~~~~~dlvilD~~mp~~~G~e~~~~lr~~~ 70 (137)
T d1ny5a1 11 VFRGLLEEYLSMKGIKVESA---E--------RGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERS 70 (137)
T ss_dssp HHHHHHHHHHHHHTCEEEEE---S--------SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEEE---C--------CHHHHHHHhhccccccchHHHhhhhhhHHHHHHHHHHhC
Confidence 36777888888888876532 1 23455666666788998886 44456677777777654
No 133
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.53 E-value=74 Score=23.10 Aligned_cols=56 Identities=7% Similarity=0.051 Sum_probs=34.2
Q ss_pred hHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHc
Q 006931 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRL 241 (625)
Q Consensus 175 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~ 241 (625)
..+.+...+++.|..+... . +..+.++.+++..+++|++... ..+...+++..++.
T Consensus 14 ~~~~l~~~L~~~g~~v~~a---~--------~~~~al~~l~~~~~dlii~D~~mp~~~G~~~~~~~r~~ 71 (121)
T d1xhfa1 14 TRNTLKSIFEAEGYDVFEA---T--------DGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQ 71 (121)
T ss_dssp HHHHHHHHHHTTTCEEEEE---S--------SHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEE---C--------ChHHHHHHHHhcCCCEEEeecccCCccCcHHHHHHHhc
Confidence 5677788888888776532 1 2234555666677888887533 23455566665553
No 134
>d1j3ma_ d.129.7.1 (A:) Hypothetical protein TT1751 (TTHA1732) {Thermus thermophilus HB8 [TaxId: 300852]}
Probab=23.38 E-value=1e+02 Score=22.49 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=47.9
Q ss_pred cchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHH-H-hcCCceEEEEEcchhhHHHHHHHHHHcCCCCCCeEE
Q 006931 173 RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK-V-RMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVW 250 (625)
Q Consensus 173 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~-i-~~~~~~vIvl~~~~~~~~~il~~a~~~gm~~~~~~~ 250 (625)
.+....+++.+++.|+.|.... |....+++ . ....+-.|+.+|++..+..+++.--..|...|=.+.
T Consensus 11 ~e~~~~l~~al~~~G~~v~~~~-----------d~~~~~~~~~~~~~~~~~i~~~cnp~~a~~~l~~~p~~g~~lPcri~ 79 (127)
T d1j3ma_ 11 AEARAQVEAALKEEGFGILTEI-----------DVAATLKAKLGLEKPPYLILGACNPNLAARALEALPEIGLLLPCNVV 79 (127)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE-----------EHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHCGGGGGGCSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEe-----------CHHHHHHhccccCCCCeEEEEECChHHHHHHHHhCHHHHhhCCeEEE
Confidence 3567889999999999987643 22344443 2 334566788899999999999988877766554333
Q ss_pred E
Q 006931 251 I 251 (625)
Q Consensus 251 i 251 (625)
+
T Consensus 80 v 80 (127)
T d1j3ma_ 80 L 80 (127)
T ss_dssp E
T ss_pred E
Confidence 3
No 135
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=23.18 E-value=19 Score=29.10 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=24.4
Q ss_pred EEEEcCCChHHHHHHHHhhhcCCCcEEee
Q 006931 93 LAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (625)
Q Consensus 93 ~aviG~~~s~~~~~va~~~~~~~iP~Is~ 121 (625)
++++||.+|.=+.....+++.+++++|+.
T Consensus 6 iil~G~pGSGKsT~a~~La~~~g~~~i~~ 34 (190)
T d1ak2a1 6 AVLLGPPGAGKGTQAPKLAKNFCVCHLAT 34 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 45789999987777788999999999984
No 136
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=23.06 E-value=1.3e+02 Score=21.66 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=40.6
Q ss_pred chHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc--chhhHHHHHHHHHHcC
Q 006931 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG--YSRTGLMVFDVAQRLG 242 (625)
Q Consensus 174 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~--~~~~~~~il~~a~~~g 242 (625)
...+.++..+++.|..+... . +..+.++.+++..+++|++.. +..+...++++.++.+
T Consensus 12 ~~~~~l~~~L~~~g~~v~~a---~--------~~~~al~~l~~~~~dlillD~~mp~~~g~~~~~~lr~~~ 71 (122)
T d1kgsa2 12 DLADLITEALKKEMFTVDVC---Y--------DGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESG 71 (122)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S--------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCEEEEE---c--------chHHHHHHHHhhCccccccccccccchhHHHHHHHHhcC
Confidence 36778888888889887632 1 234556677778899999864 3456777777777654
No 137
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=22.96 E-value=98 Score=25.25 Aligned_cols=73 Identities=12% Similarity=-0.015 Sum_probs=42.7
Q ss_pred HHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcch
Q 006931 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (625)
Q Consensus 150 l~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 228 (625)
++..+++.| ++|++|..|. |-....+.++...+..|+.+.... ... .......+.+...+..+.++|++...+
T Consensus 32 LA~~~~~~g-~kV~lit~Dt-~R~ga~eQL~~~a~~l~v~~~~~~--~~~--~~~~~~~~a~~~~~~~~~d~IlIDTaG 104 (211)
T d1j8yf2 32 LAYFYKKKG-FKVGLVGADV-YRPAALEQLQQLGQQIGVPVYGEP--GEK--DVVGIAKRGVEKFLSEKMEIIIVDTAG 104 (211)
T ss_dssp HHHHHHHTT-CCEEEEECCC-SSHHHHHHHHHHHHHHTCCEECCT--TCC--CHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHCC-CceEEEEeec-cccchhHHHHHhccccCcceeecc--cch--hhhHHHHHHHHHhhccCCceEEEecCC
Confidence 334445555 4698888654 555667888888888887764221 111 112223334444455678999997654
No 138
>d1vlva1 c.78.1.1 (A:1-152) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}
Probab=22.84 E-value=1.2e+02 Score=23.03 Aligned_cols=80 Identities=19% Similarity=0.330 Sum_probs=49.0
Q ss_pred EEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCChHHH
Q 006931 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 104 (625)
Q Consensus 27 i~IG~i~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~--~v~aviG~~~s~~~ 104 (625)
-.++.+|...+ .+.+.+|+.|+.++ ++..+.+...++.-...+.++-+.+.++. .++++.++..
T Consensus 47 k~v~llF~epS---TRTR~SFe~A~~~L-------G~~~i~l~~~~s~~~~gEs~~Dt~~~ls~~~d~iv~R~~~~---- 112 (152)
T d1vlva1 47 MTLAMIFEKRS---TRTRLAFETAFAEE-------GGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYKQ---- 112 (152)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESSCH----
T ss_pred CeEEEEeecCc---ccchhheehhhhhc-------ccccccccccccccccchhHHHHHHHHhhccccEEEEecCc----
Confidence 45888888865 47899999999985 34555443333333333444555556665 4444455432
Q ss_pred HHHHHhhhcCCCcEEe
Q 006931 105 HVLSHLANELQVPLLS 120 (625)
Q Consensus 105 ~~va~~~~~~~iP~Is 120 (625)
..+..++....+|+|.
T Consensus 113 ~~~~~~a~~~~~PviN 128 (152)
T d1vlva1 113 ETVEKLAEYSGVPVYN 128 (152)
T ss_dssp HHHHHHHHHHCSCEEE
T ss_pred cceeeeccccceeEEe
Confidence 2345666777899996
No 139
>d1dxha1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.01 E-value=60 Score=24.95 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=48.0
Q ss_pred eEEEEEEeecCCCCchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCChHH
Q 006931 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVM 103 (625)
Q Consensus 26 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~IN~~~~iL~g~~l~~~~~D~~~~~~~a~~~~~~l~~~--~v~aviG~~~s~~ 103 (625)
.-.++.+|...+ .+.+.+|+.|+.++ ++..+.+...++.-...+.++-+.+.++. .+.++=++.
T Consensus 45 ~K~v~~lF~epS---tRTR~SFe~A~~~L-------G~~~i~l~~~~s~~~kgEs~~Dt~~~ls~~~d~iviR~~~---- 110 (150)
T d1dxha1 45 RKNIALIFEKTS---TRTRCAFEVAAYDQ-------GANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFK---- 110 (150)
T ss_dssp TCEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCBTTTBCHHHHHHHHHHHCSEEEEECSC----
T ss_pred CCEEEEEEcCCC---CceeEEeeeehhhc-------ccccccccccccccccCcchhhhhhhhhcccceEEEEecc----
Confidence 456888888765 47899999999985 34555443333322233334444455554 333333432
Q ss_pred HHHHHHhhhcCCCcEEe
Q 006931 104 AHVLSHLANELQVPLLS 120 (625)
Q Consensus 104 ~~~va~~~~~~~iP~Is 120 (625)
...+..+++...+|+|.
T Consensus 111 ~~~~~~~~~~~~iPVIN 127 (150)
T d1dxha1 111 QEIVEELAKFAGVPVFN 127 (150)
T ss_dssp HHHHHHHHHHSSSCEEE
T ss_pred hhHHHHHHHhcCCcEEe
Confidence 23456667778899996
No 140
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.64 E-value=52 Score=29.22 Aligned_cols=42 Identities=19% Similarity=0.093 Sum_probs=33.6
Q ss_pred eHHHHHHHHHHCCCCccEEEEeCCCCCCCCCHHHHHHHHHcCcccEEEee
Q 006931 491 CIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 540 (625)
Q Consensus 491 ~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~ 540 (625)
|-++.+.+.+.++.. ++.+.. .+-...|..|.+|+||+++.+
T Consensus 16 C~~l~~~~s~~~~~~--v~Cv~~------~s~~~C~~~i~~g~AD~~~l~ 57 (324)
T d1eh3a_ 16 CFQWQRNMRRVRGPP--VSCIKR------DSPIQCIQAIAENRADAVTLD 57 (324)
T ss_dssp HHHHHHHHHHTTCCC--EEEEEC------SSHHHHHHHHHTTSCCBEEEC
T ss_pred HHHHHHHHHhccCCC--eEEEEC------CCHHHHHHHHHCCCCCEEEEC
Confidence 446777777777766 888875 468999999999999999763
No 141
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=21.55 E-value=1.5e+02 Score=21.90 Aligned_cols=58 Identities=10% Similarity=0.043 Sum_probs=34.9
Q ss_pred hHHHHHHHHhccce-EEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEc--chhhHHHHHHHHHHcC
Q 006931 175 GVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG--YSRTGLMVFDVAQRLG 242 (625)
Q Consensus 175 ~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~--~~~~~~~il~~a~~~g 242 (625)
..+.++..+++.|. .++.. . .+-...++.+++..+++|++.. +..+...++++.++..
T Consensus 15 ~r~~l~~~L~~~g~~~~v~~--a--------~~g~~al~~~~~~~pDlvllDi~MP~~dG~e~~~~ir~~~ 75 (140)
T d1a2oa1 15 MRQIMTEIINSHSDMEMVAT--A--------PDPLVARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLMRLR 75 (140)
T ss_dssp HHHHHHHHHHTSTTEEEEEE--E--------SSHHHHHHHHHHHCCSEEEEECCCSSSCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCCeEEEEE--E--------CCHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHhC
Confidence 56777777877763 22211 1 1233455666667788888864 4456667777777654
No 142
>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]}
Probab=21.38 E-value=42 Score=26.46 Aligned_cols=32 Identities=3% Similarity=0.103 Sum_probs=21.2
Q ss_pred cEEEEEEec-CCCCcchHHHHHHHHhccceEEE
Q 006931 160 GEVIAIFND-DDQGRNGVTALGDKLAEIRCKIS 191 (625)
Q Consensus 160 ~~v~ii~~d-~~~g~~~~~~l~~~l~~~g~~v~ 191 (625)
|+|+|+|.. .-..+..++.+.+.+...++++.
T Consensus 2 KKI~I~YgS~tGnTe~vA~~I~~~l~~~~~~v~ 34 (169)
T d1oboa_ 2 KKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLH 34 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTTTEEEE
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccCCceEE
Confidence 678999943 33334567777777777776654
No 143
>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
Probab=21.38 E-value=72 Score=22.78 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=38.2
Q ss_pred CCCcEEEEEEecCCC------ChHHHHHHHHHH----HhcCcEEEEcCCChHHHHHHHHhhhcCCCcEEe
Q 006931 61 LGGRKLSITMHDAKF------NGFLSIMGALQF----METDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (625)
Q Consensus 61 L~g~~l~~~~~D~~~------~~~~a~~~~~~l----~~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 120 (625)
+|+..+-| +.|+.. +...-.+.+.++ .++++.+++=.-.+.++.++..+-+.+.+|+|.
T Consensus 23 lP~~~~iY-~~D~a~~PYG~ks~~~I~~~~~~~~~~l~~~~~~~iViACNTaS~~al~~lr~~~~~PiiG 91 (105)
T d1b74a1 23 YRKVDIVY-LGDTARVPYGIRSKDTIIRYSLECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFG 91 (105)
T ss_dssp SSSCEEEE-EECGGGCCGGGSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHSSSCEEE
T ss_pred CCCCCEEE-EecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCEEE
Confidence 47877755 456543 223333333332 345888888766677777788888899999986
No 144
>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=21.31 E-value=95 Score=24.12 Aligned_cols=95 Identities=7% Similarity=-0.017 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCc-EEEEEEecCCC-CcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEE
Q 006931 148 SAIAEMVSYFGWG-EVIAIFNDDDQ-GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 225 (625)
Q Consensus 148 ~al~~ll~~~~W~-~v~ii~~d~~~-g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~ 225 (625)
+++-+-...+|-+ +|.++.-...- ......-....++..|+++.....++ .. +.....++++++++++|
T Consensus 23 E~LR~~~~~~g~rP~v~la~lG~~a~h~ara~f~~n~f~~gGfev~~~~~~~------~~---e~v~aa~~~~a~vvvic 93 (163)
T d7reqb2 23 EQLMDRSTSVSERPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGT------TA---EIVEAFKKSGAQVADLC 93 (163)
T ss_dssp HHHHHHHHHSSSCCBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEESCC------HH---HHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHhcCCCCeEEEEcCCChhhhhhHHHHHHHHHHccCeeeccCCCCC------cH---HHHHHHHhCCCCEEEEe
Confidence 4454445555644 44443322221 11233445566777898876544332 22 34566777899999998
Q ss_pred cchh----hHHHHHHHHHHcCCCCCCeEEEeeC
Q 006931 226 GYSR----TGLMVFDVAQRLGMMDSGYVWIATT 254 (625)
Q Consensus 226 ~~~~----~~~~il~~a~~~gm~~~~~~~i~~~ 254 (625)
+... .+..+.+++++.| .+.+++...
T Consensus 94 ssd~~y~~~~~~~~~aLk~ag---~~~~vlaGg 123 (163)
T d7reqb2 94 SSAKVYAQQGLEVAKALKAAG---AKALYLSGA 123 (163)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT---CSEEEEESC
T ss_pred cCccchHHHHHHHHHHHHhcc---cceeEEEec
Confidence 7763 3445666777766 345666543
No 145
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.84 E-value=23 Score=28.06 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=24.5
Q ss_pred EEEEcCCChHHHHHHHHhhhcCCCcEEee
Q 006931 93 LAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (625)
Q Consensus 93 ~aviG~~~s~~~~~va~~~~~~~iP~Is~ 121 (625)
.+|+||..|.=+.....+++.+++++|+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~~~~i~~ 31 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYGIPHIST 31 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCceech
Confidence 56899999987777788899999999974
No 146
>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]}
Probab=20.81 E-value=1.6e+02 Score=22.15 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=36.3
Q ss_pred cCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHH-HHHhcCCc-eEEEEEcchh
Q 006931 168 DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNEL-VKVRMMEA-RVIVVHGYSR 229 (625)
Q Consensus 168 d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l-~~i~~~~~-~vIvl~~~~~ 229 (625)
.|..|...-+.+.+.|++.|.+|...-..... ..+-+++...+ +.+.+... +.|++|+++.
T Consensus 9 sDh~G~~lK~~l~~~L~~~g~~v~D~G~~~~~-~~dYpd~a~~va~~v~~~~~~~GIliCGtG~ 71 (145)
T d1o1xa_ 9 SDHAAFELKEKVKNYLLGKGIEVEDHGTYSEE-SVDYPDYAKKVVQSILSNEADFGILLCGTGL 71 (145)
T ss_dssp ECSTTHHHHHHHHHHHHHTTCEEEECCCCSSS-CCCHHHHHHHHHHHHHTTSCSEEEEEESSSH
T ss_pred eCChHHHHHHHHHHHHHHCCCEEEECCCCCCC-CCCccHHHHHHHHHHhcCcccEEEEecCCcH
Confidence 34568889999999999999998753322222 12344443333 34444444 4566666654
No 147
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=20.65 E-value=1.5e+02 Score=23.05 Aligned_cols=71 Identities=13% Similarity=0.041 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCC-ceEEEEE
Q 006931 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVH 225 (625)
Q Consensus 147 ~~al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~vIvl~ 225 (625)
...++.+++..||.- ++... ....+.+.+.+.+.+.++........ .....+..+++.+++.+ .++.|+.
T Consensus 54 ~~~va~~l~~~G~eV---i~lg~---~~~~e~iv~aa~~~~advI~iSs~~~---~~~~~~~~l~~~L~~~g~~~v~Viv 124 (168)
T d7reqa2 54 QKVIATAYADLGFDV---DVGPL---FQTPEETARQAVEADVHVVGVSSLAG---GHLTLVPALRKELDKLGRPDILITV 124 (168)
T ss_dssp HHHHHHHHHHTTCEE---EECCT---TBCHHHHHHHHHHHTCSEEEEEECSS---CHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHhCCcce---ecCCC---cCcHHHHHHHHHccCCCEEEEecCcc---cchHHHHHHHHHHHhcCCCCeEEEE
Confidence 355677889999953 33221 12467777777877777665443332 23567778888888764 4555554
Q ss_pred c
Q 006931 226 G 226 (625)
Q Consensus 226 ~ 226 (625)
+
T Consensus 125 G 125 (168)
T d7reqa2 125 G 125 (168)
T ss_dssp E
T ss_pred e
Confidence 4
No 148
>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.44 E-value=1.6e+02 Score=24.26 Aligned_cols=77 Identities=13% Similarity=0.061 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCC--CCCCChhHHHHHHHHHhcCCceEEEEEc
Q 006931 149 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPP--DQSVTETDVRNELVKVRMMEARVIVVHG 226 (625)
Q Consensus 149 al~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 226 (625)
++.++++..|...|=+-. +-.......+.+++.+++.|+++........ .......+++..++..+.-+++.|++..
T Consensus 23 ~~l~~~a~~G~dgIEi~~-~~~~~~~~~~~l~~~~~~~GL~i~~~~~~~~~~~~~~~~~~~~~~i~~A~~LG~~~v~~~~ 101 (250)
T d1yx1a1 23 SFLPLLAMAGAQRVELRE-ELFAGPPDTEALTAAIQLQGLECVFSSPLELWREDGQLNPELEPTLRRAEACGAGWLKVSL 101 (250)
T ss_dssp GGHHHHHHHTCSEEEEEG-GGCSSCCCHHHHHHHHHHTTCEEEEEEEEEEECTTSSBCTTHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHhCCCEEEEec-ccCCCcchHHHHHHHHHHcCCEEEEecccccccCchhhHHHHHHHHHHHHHhCCCEEEEee
Confidence 457888899998887532 2112233478899999999998864322111 1012234555666666666666665543
No 149
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}
Probab=20.22 E-value=1.1e+02 Score=22.34 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=35.5
Q ss_pred chHHHHHHHHhccceE-EEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 006931 174 NGVTALGDKLAEIRCK-ISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 242 (625)
Q Consensus 174 ~~~~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~g 242 (625)
.....+.+.+++.|.+ |.. ..+..+.++.+++..+++|++... ..+...++++.++..
T Consensus 17 ~~~~~l~~~L~~~g~~~v~~-----------a~~~~~al~~l~~~~~dlii~D~~mP~~~G~el~~~lr~~~ 77 (129)
T d1p6qa_ 17 TSRLLLGDALQQLGFKQITA-----------AGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANP 77 (129)
T ss_dssp HHHHHHHHHHHTTTCSCEEC-----------CSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHCCCeEEEE-----------ECCHHHHHHHHHhCCCCeEEeeeecCCCChHHHHHHHHhCc
Confidence 3567777888887774 321 112334566666777888887543 345667777766543
No 150
>d2f7wa1 c.57.1.1 (A:2-174) MogA {Shewanella oneidensis [TaxId: 70863]}
Probab=20.19 E-value=1.5e+02 Score=23.00 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=40.3
Q ss_pred cEEEEEEecCC--CC---cchHHHHHHHHhccceEE--EEeeecCCCCCCChhHHHHHHHHHhc-CCceEEEEEcch
Q 006931 160 GEVIAIFNDDD--QG---RNGVTALGDKLAEIRCKI--SYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYS 228 (625)
Q Consensus 160 ~~v~ii~~d~~--~g---~~~~~~l~~~l~~~g~~v--~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~~ 228 (625)
.||+||...|. .| ......+.+.+.+.|.++ .....++.. ...+...+.++.+ .+.++|+..+..
T Consensus 3 ~rv~IitvsD~~~~G~~~D~~gp~l~~~L~~~G~~~~~v~~~ivpDd----~~~I~~~l~~~~~~~~~dlIittGGt 75 (173)
T d2f7wa1 3 AKIGIVTVSDRASAGIYEDISGKAIIDTLNDYLTSEWEPIYQVIPDE----QDVIETTLIKMADEQDCCLIVTTGGT 75 (173)
T ss_dssp EEEEEEEECHHHHHCCSCCHHHHHHHHHHHHHBCSCEEEEEEEECSC----HHHHHHHHHHHHHTSCEEEEEEESCC
T ss_pred CEEEEEEeCCCCcCCCccCCCHHHHHHHHHHhCCCceEEEEEEcCCc----HHHHHHHhhhhhhcccccEEEEeccc
Confidence 36777775442 22 345678888888887653 233446543 6677777777653 467877776543
No 151
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=20.02 E-value=2e+02 Score=23.87 Aligned_cols=85 Identities=9% Similarity=0.051 Sum_probs=57.0
Q ss_pred HHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHhccceEEEEeeecCCCCCCChhHHHHHHHHHhcCCceEEEEEcc--
Q 006931 150 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-- 227 (625)
Q Consensus 150 l~~ll~~~~W~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-- 227 (625)
++++. ..|-.-++|++ |..|..+..+.+...-+..++.|....-+ .. . -++.+.+..+++.|++...
T Consensus 68 ~a~~~-~~gA~aiSVLT-d~~~F~Gs~~dl~~v~~~~~~PiLrKDFI-id------~--~QI~ea~~~GADaiLLI~~~L 136 (247)
T d1a53a_ 68 YSKFM-ERYAVGLSILT-EEKYFNGSYETLRKIASSVSIPILMKDFI-VK------E--SQIDDAYNLGADTVLLIVKIL 136 (247)
T ss_dssp HHHHH-TTTCSEEEEEC-CCTTTCCCHHHHHHHHHHCCSCEEEESCC-CS------H--HHHHHHHHHTCSEEEEEGGGS
T ss_pred HHHHH-HhCCCeEEEec-CccccccchHHHHHHHhccccceeecccc-cC------h--HHHHHHHHhhcchhhhhhhhc
Confidence 34433 35778888886 45565567788877766667776643322 11 1 2455666779999998644
Q ss_pred -hhhHHHHHHHHHHcCCCC
Q 006931 228 -SRTGLMVFDVAQRLGMMD 245 (625)
Q Consensus 228 -~~~~~~il~~a~~~gm~~ 245 (625)
.+....+.+.|.++||..
T Consensus 137 ~~~~l~~l~~~a~~lgl~~ 155 (247)
T d1a53a_ 137 TERELESLLEYARSYGMEP 155 (247)
T ss_dssp CHHHHHHHHHHHHTTTCCC
T ss_pred cHHHHHHHHHHHHHHhhhH
Confidence 467899999999999863
Done!