BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006933
(625 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F49|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|E Chain E, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|F Chain F, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|G Chain G, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|H Chain H, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|I Chain I, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|J Chain J, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|K Chain K, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|L Chain L, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|M Chain M, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|N Chain N, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|O Chain O, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|P Chain P, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1JZ1|I Chain I, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|J Chain J, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|K Chain K, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|L Chain L, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|M Chain M, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|N Chain N, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|O Chain O, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|P Chain P, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ0|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|E Chain E, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|F Chain F, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|G Chain G, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|H Chain H, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JYZ|I Chain I, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|J Chain J, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|K Chain K, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|L Chain L, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|M Chain M, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|N Chain N, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|O Chain O, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|P Chain P, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYY|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|E Chain E, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|F Chain F, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|G Chain G, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|H Chain H, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400
Length = 1023
Score = 414 bits (1065), Expect = e-116, Method: Compositional matrix adjust.
Identities = 237/520 (45%), Positives = 303/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 298 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 357
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 358 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 417
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 418 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 474
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 475 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 534
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 535 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 594
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 595 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 654
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 655 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 708
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ T + LGN W+
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHL--TTSEMDFXIELGN-------KRWQ-- 757
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 758 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 797
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 955 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1014
Query: 601 SFSI 604
+ +
Sbjct: 1015 HYQL 1018
>pdb|3SEP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3T08|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T09|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
Length = 1052
Score = 414 bits (1064), Expect = e-116, Method: Compositional matrix adjust.
Identities = 236/520 (45%), Positives = 304/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 327 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 386
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 387 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 446
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 447 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 503
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 504 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 563
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 564 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 623
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 624 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 683
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 684 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 737
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 738 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 786
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 787 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVAE 826
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 984 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1043
Query: 601 SFSI 604
+ +
Sbjct: 1044 HYQL 1047
>pdb|3MUZ|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MV0|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV1|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
Length = 1052
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 236/520 (45%), Positives = 304/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 327 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 386
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 387 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 446
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 447 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 503
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 504 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 563
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 564 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 623
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 624 TPNDAQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 683
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 684 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 737
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 738 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 786
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 787 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 826
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 984 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1043
Query: 601 SFSI 604
+ +
Sbjct: 1044 HYQL 1047
>pdb|1JZ7|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
Length = 1023
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 236/520 (45%), Positives = 304/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 298 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 357
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 358 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 417
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 418 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 474
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 475 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 534
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 535 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 594
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 595 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 654
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 655 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 708
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 757
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 758 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 797
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 955 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1014
Query: 601 SFSI 604
+ +
Sbjct: 1015 HYQL 1018
>pdb|3MUY|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a)
Length = 1023
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 236/520 (45%), Positives = 304/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 298 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 357
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 358 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 417
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 418 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 474
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 475 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 534
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 535 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 594
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 595 TPNDAQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 654
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 655 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 708
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 757
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 758 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 797
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 955 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1014
Query: 601 SFSI 604
+ +
Sbjct: 1015 HYQL 1018
>pdb|1BGM|I Chain I, Beta-Galactosidase (Chains I-P)
pdb|1BGM|J Chain J, Beta-Galactosidase (Chains I-P)
pdb|1BGM|K Chain K, Beta-Galactosidase (Chains I-P)
pdb|1BGM|L Chain L, Beta-Galactosidase (Chains I-P)
pdb|1BGM|M Chain M, Beta-Galactosidase (Chains I-P)
pdb|1BGM|N Chain N, Beta-Galactosidase (Chains I-P)
pdb|1BGM|O Chain O, Beta-Galactosidase (Chains I-P)
pdb|1BGM|P Chain P, Beta-Galactosidase (Chains I-P)
pdb|1BGL|A Chain A, Beta-Galactosidase (Chains A-H)
pdb|1BGL|B Chain B, Beta-Galactosidase (Chains A-H)
pdb|1BGL|C Chain C, Beta-Galactosidase (Chains A-H)
pdb|1BGL|D Chain D, Beta-Galactosidase (Chains A-H)
pdb|1BGL|E Chain E, Beta-Galactosidase (Chains A-H)
pdb|1BGL|F Chain F, Beta-Galactosidase (Chains A-H)
pdb|1BGL|G Chain G, Beta-Galactosidase (Chains A-H)
pdb|1BGL|H Chain H, Beta-Galactosidase (Chains A-H)
pdb|1JZ2|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
Length = 1023
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 236/520 (45%), Positives = 304/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 298 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 357
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 358 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 417
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 418 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 474
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 475 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 534
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 535 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 594
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 595 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 654
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 655 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 708
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 757
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 758 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 797
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 955 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1014
Query: 601 SFSI 604
+ +
Sbjct: 1015 HYQL 1018
>pdb|1DP0|A Chain A, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|B Chain B, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|C Chain C, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|D Chain D, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1JZ6|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ5|A Chain A, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|B Chain B, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|C Chain C, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|D Chain D, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ4|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ3|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JYX|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1HN1|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
Length = 1023
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 236/520 (45%), Positives = 304/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 298 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 357
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 358 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 417
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 418 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 474
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 475 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 534
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 535 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 594
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 595 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 654
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 655 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 708
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 757
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 758 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 797
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 955 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1014
Query: 601 SFSI 604
+ +
Sbjct: 1015 HYQL 1018
>pdb|1F4A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4H|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
Length = 1021
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 236/520 (45%), Positives = 304/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 296 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 355
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 356 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 415
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 416 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 472
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 473 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 532
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 533 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 592
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 593 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 652
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 653 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 706
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 707 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 755
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 756 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 795
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 953 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1012
Query: 601 SFSI 604
+ +
Sbjct: 1013 HYQL 1016
>pdb|3T2O|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2P|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2Q|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
Length = 1052
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 236/520 (45%), Positives = 304/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 327 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 386
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 387 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 446
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 447 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 503
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 504 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 563
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 564 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 623
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 624 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 683
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 684 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 737
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 738 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 786
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 787 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVDE 826
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 984 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1043
Query: 601 SFSI 604
+ +
Sbjct: 1044 HYQL 1047
>pdb|3T0A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0B|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0D|A Chain A, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|B Chain B, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|C Chain C, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|D Chain D, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
Length = 1052
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 236/520 (45%), Positives = 304/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 327 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 386
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 387 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 446
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 447 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 503
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 504 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 563
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 564 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 623
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 624 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 683
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 684 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 737
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 738 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 786
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 787 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVTE 826
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 984 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1043
Query: 601 SFSI 604
+ +
Sbjct: 1044 HYQL 1047
>pdb|1JZ8|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JYW|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYV|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYN|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
Length = 1023
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 235/520 (45%), Positives = 304/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 298 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 357
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 358 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 417
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 418 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 474
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 475 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 534
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LC+Y+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 535 LCQYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 594
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 595 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 654
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 655 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 708
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 757
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 758 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 797
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 955 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1014
Query: 601 SFSI 604
+ +
Sbjct: 1015 HYQL 1018
>pdb|3IAP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416q)
Length = 1023
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 235/520 (45%), Positives = 304/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 298 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 357
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANI+T
Sbjct: 358 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIQT 417
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 418 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 474
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 475 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 534
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 535 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 594
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 595 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 654
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 655 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 708
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 757
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 758 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 797
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 955 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1014
Query: 601 SFSI 604
+ +
Sbjct: 1015 HYQL 1018
>pdb|3VD3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
Length = 1052
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 235/520 (45%), Positives = 304/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 327 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 386
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 387 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 446
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLG+E+GHG NH A W
Sbjct: 447 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGDESGHGANHDALYRW 503
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 504 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 563
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 564 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 623
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 624 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 683
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 684 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 737
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 738 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 786
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 787 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 826
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 984 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1043
Query: 601 SFSI 604
+ +
Sbjct: 1044 HYQL 1047
>pdb|1PX3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
Length = 1023
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 234/515 (45%), Positives = 302/515 (58%), Gaps = 39/515 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 298 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 357
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 358 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 417
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 418 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 474
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 475 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 534
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 535 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 594
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 595 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 654
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 655 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 708
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 757
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDND 497
F+ Q+G + + + + F RAP DND
Sbjct: 758 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDND 792
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 955 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1014
Query: 601 SFSI 604
+ +
Sbjct: 1015 HYQL 1018
>pdb|3VD5|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD7|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD9|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
Length = 1052
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 235/520 (45%), Positives = 304/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 327 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 386
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 387 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 446
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLG+E+GHG NH A W
Sbjct: 447 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGSESGHGANHDALYRW 503
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 504 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 563
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 564 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 623
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 624 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 683
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 684 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 737
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 738 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 786
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 787 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 826
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 984 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1043
Query: 601 SFSI 604
+ +
Sbjct: 1044 HYQL 1047
>pdb|3CZJ|A Chain A, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|B Chain B, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|C Chain C, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|D Chain D, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
Length = 1023
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 235/520 (45%), Positives = 303/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 298 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 357
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 358 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 417
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLG E+GHG NH A W
Sbjct: 418 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGTESGHGANHDALYRW 474
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 475 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 534
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 535 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 594
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 595 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 654
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 655 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 708
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 757
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 758 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 797
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 955 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1014
Query: 601 SFSI 604
+ +
Sbjct: 1015 HYQL 1018
>pdb|3VDA|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDB|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDC|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
Length = 1052
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 235/520 (45%), Positives = 303/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 327 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 386
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 387 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 446
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLG E+GHG NH A W
Sbjct: 447 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGTESGHGANHDALYRW 503
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 504 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 563
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 564 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 623
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 624 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 683
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 684 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 737
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 738 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 786
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 787 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 826
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 984 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1043
Query: 601 SFSI 604
+ +
Sbjct: 1044 HYQL 1047
>pdb|3I3B|A Chain A, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|B Chain B, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|C Chain C, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|D Chain D, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3D|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3E|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a)
Length = 1023
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 235/520 (45%), Positives = 303/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 298 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 357
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 358 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 417
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 418 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 474
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 475 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 534
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HA GNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 535 LCEYAHAAGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 594
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 595 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 654
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 655 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 708
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 757
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 758 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 797
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 955 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1014
Query: 601 SFSI 604
+ +
Sbjct: 1015 HYQL 1018
>pdb|3DYO|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n)
Length = 1023
Score = 411 bits (1056), Expect = e-115, Method: Compositional matrix adjust.
Identities = 235/520 (45%), Positives = 304/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 298 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 357
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 358 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 417
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
+G L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 418 NGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 474
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 475 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 534
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 535 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 594
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 595 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 654
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 655 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 708
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 757
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 758 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 797
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 955 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1014
Query: 601 SFSI 604
+ +
Sbjct: 1015 HYQL 1018
>pdb|3DYM|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3E1F|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
Length = 1023
Score = 411 bits (1056), Expect = e-115, Method: Compositional matrix adjust.
Identities = 235/520 (45%), Positives = 303/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 298 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 357
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANIET
Sbjct: 358 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIET 417
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
G L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 418 EGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 474
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 475 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 534
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 535 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 594
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 595 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 654
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 655 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 708
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 757
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 758 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 797
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 955 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1014
Query: 601 SFSI 604
+ +
Sbjct: 1015 HYQL 1018
>pdb|3IAQ|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416v)
Length = 1023
Score = 410 bits (1055), Expect = e-115, Method: Compositional matrix adjust.
Identities = 235/520 (45%), Positives = 303/520 (58%), Gaps = 39/520 (7%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P+LWSAE PNLY VV L A G +++ E+C VG R+V LL+NG P++IRGVNRH
Sbjct: 298 PKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRH 357
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
EHHP G+ E MV+D++LMKQNN NAVR SHYP HP WY LCD +GLY++DEANI T
Sbjct: 358 EHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIVT 417
Query: 122 HGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGW 181
HG L T +P W AM +RV MV+RD+NH S+I WSLGNE+GHG NH A W
Sbjct: 418 HGMVPMNRL---TDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRW 474
Query: 182 IRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRV-----------WDIVMIAKDPTETRPLI 230
I+ DPSR + YEGGG+ T +TDI+CPMY RV W I P ETRPLI
Sbjct: 475 IKSVDPSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLI 534
Query: 231 LCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290
LCEY+HAMGNS G +YW+A LQGGF+WDWVDQ L++ +G AYGGDFGD
Sbjct: 535 LCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGD 594
Query: 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGTLKISNTNFFETTQGLEFSW 350
TPND FC+NGL++ DRTPHPAL E K+ Q + L T+++++ F + W
Sbjct: 595 TPNDRQFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHW 654
Query: 351 VAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRW 410
+ DG L G + L + P IEL P SA +++LTV N+T W
Sbjct: 655 MVALDGKPLASGEVPLD-VAPQGKQLIELPELP-----QPESAGQLWLTVRVVQPNATAW 708
Query: 411 AEAGHVISTAQ--------VQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIK 462
+EAGH+ + Q V LP+ +PH+ + ++ LGN W+
Sbjct: 709 SEAGHISAWQQWRLAENLSVTLPAASHAIPHLTTSEMDFCIE--LGN-------KRWQ-- 757
Query: 463 FDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE 502
F+ Q+G + + + + F RAP DND G E
Sbjct: 758 FNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE 797
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 541 MQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAY 600
Q N S Y+ +L +H L E+ +++D HMG+GGDDSW+P V ++ + A Y
Sbjct: 955 FQFNISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRY 1014
Query: 601 SFSI 604
+ +
Sbjct: 1015 HYQL 1018
>pdb|3BGA|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
pdb|3BGA|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
Length = 1010
Score = 296 bits (759), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 190/508 (37%), Positives = 255/508 (50%), Gaps = 48/508 (9%)
Query: 3 RLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHE 62
+ W+AE PNLYTLV+ LK A G V + C VG R + +NG PV+++G NRHE
Sbjct: 302 KAWNAEHPNLYTLVLELKDAQGKVTELTGCEVGFRTSEIKDGRFCINGVPVLVKGTNRHE 361
Query: 63 HHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETH 122
H ++G+T + +D+ L KQ+NIN VRNSHYP HP WY+LCD +GLY IDEANIE+H
Sbjct: 362 HS-QLGRTVSKELXEQDIRLXKQHNINXVRNSHYPTHPYWYQLCDRYGLYXIDEANIESH 420
Query: 123 GFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGWI 182
G + + +W A DR ER KNH +I+ WS GNEAG+G N W+
Sbjct: 421 GXGYGP--ASLAKDSTWLTAHXDRTHRXYERSKNHPAIVIWSQGNEAGNGINFERTYDWL 478
Query: 183 RGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVWDIVMIAKDPTETRPLILCEYSHAMGNSN 242
+ + R + YE +TDI C Y V +I RP ILCEY HA GNS
Sbjct: 479 KSVEKGRPVQYERA-ELNYNTDIYCRXYRSVDEIKAYVGKKDIYRPFILCEYLHAXGNSC 537
Query: 243 GNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFG--DTPNDLNFCLN 300
G EYWE ++ QGG IWDWVDQ DG +W YGGD+G P+ NFC N
Sbjct: 538 GGXKEYWEVFENEPXAQGGCIWDWVDQNFREIDKDGKWYWTYGGDYGPEGIPSFGNFCGN 597
Query: 301 GLLWPDRTPHPALHEVKYVYQAIKVSLK-KGTLKISNTNFFETTQGLEF--SWVAHG-DG 356
GL+ R PHP L EVK +YQ IK +L + LK+ N+++ + E+ W G DG
Sbjct: 598 GLVNAVREPHPHLLEVKKIYQNIKATLSDRKNLKVCIKNWYDFSNLNEYILRWNVKGEDG 657
Query: 357 YKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRWAEAGHV 416
L G + +PH+ ++ L + KL N+ R
Sbjct: 658 TVLAEGTKEVD-CEPHATVDVTLGA--------------------VKLPNTVR------- 689
Query: 417 ISTAQVQLPSKRERLPHVIRTG-----DAIILQENLGNTIQLSHQNSWEIKF--DIQTGA 469
A + L R+ ++ T D +L N NT Q + E F D TGA
Sbjct: 690 --EAYLNLSWSRKEATPLVDTDWEVAYDQFVLAGN-KNTTAYRPQKAGETAFVVDKNTGA 746
Query: 470 VESWKVEGVSVMKRGIFPCFWRAPTDND 497
+ S ++G ++ I +R TDND
Sbjct: 747 LSSLTLDGKELLAAPITLSLFRPATDND 774
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 524 NKEGIGIYASMYSSSPPMQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDD 583
++ G G++ S+ P Q + ++ L++A H +L ++ I +HLD + G+ G
Sbjct: 920 DQAGEGVFXE---SNRPFQFSIIPFSDVLLEKAHHINELERDGXITIHLDAEQAGV-GTA 975
Query: 584 SWTPCVHDKYLVPAVAYSFSIRLSPL 609
+ P V +YLVP SF L P+
Sbjct: 976 TCGPGVLPQYLVPVKKQSFEFTLYPV 1001
>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2
Protein From Bacteroides Thetaiotaomicron
Length = 1000
Score = 292 bits (747), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 188/504 (37%), Positives = 261/504 (51%), Gaps = 40/504 (7%)
Query: 3 RLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHE 62
R W+AE P LYTL++ LK A G V + VG R + +NG PV+++GVNRHE
Sbjct: 298 RRWNAEHPELYTLLLELKDAGGKVTEITGTKVGFRTSEIKNGRFCINGVPVLVKGVNRHE 357
Query: 63 HHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETH 122
H ++G+T + +D+ L KQ+NIN VRNSHYP HP WY+LCD +GLY+IDEANIE+H
Sbjct: 358 HS-QLGRTVSKELXEQDIRLXKQHNINTVRNSHYPAHPYWYQLCDRYGLYVIDEANIESH 416
Query: 123 GFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGWI 182
G + + +W A +DR ER KNH S++ WSLGNEAG+G N W+
Sbjct: 417 GXGYGP--ASLAKDSTWLPAHIDRTRRXYERSKNHPSVVIWSLGNEAGNGINFERTYDWL 474
Query: 183 RGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVWDIV---MIAKDPTETRPLILCEYSHAMG 239
+ + +R + YE +TDI C Y V D++ ++ KD RP ILCEY HA G
Sbjct: 475 KSVEKNRPVQYE-RAEENYNTDIYCRXYRSV-DVIRNYVVRKDI--YRPFILCEYLHAXG 530
Query: 240 NSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFG--DTPNDLNF 297
NS G EYWE ++ QGG IWDWVDQ DG +W YGGD+G D P+ NF
Sbjct: 531 NSCGGXKEYWEVFENEPXAQGGCIWDWVDQSFREVDKDGKWYWTYGGDYGPKDVPSFGNF 590
Query: 298 CLNGLLWPDRTPHPALHEVKYVYQAIKVSL-KKGTLKISNTNFFETTQGLEF--SWVAHG 354
C NGL+ R PHP L EVK +YQ IK +L K L + N+F+ + E+ W G
Sbjct: 591 CCNGLVNAVREPHPHLLEVKKIYQNIKSTLIDKKNLTVRVKNWFDFSDLNEYILHWKVTG 650
Query: 355 -DGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKLMNSTRWAEA 413
DG L G + +PH+ E+ L + + E +L + ST +
Sbjct: 651 DDGTVLAEGNKEVA-CEPHATVELTLGAVQL-----PKTIREAYLDLGWTRKKSTPLVDT 704
Query: 414 GHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIKFDIQTGAVESW 473
I+ Q LP+ + + G + S + D TGA++S
Sbjct: 705 AWEIAYDQFVLPASGK-----VWNG-------------KPSEAGKTTFEVDENTGALKSL 746
Query: 474 KVEGVSVMKRGIFPCFWRAPTDND 497
++G ++ + +R TDND
Sbjct: 747 CLDGEELLASPVTISLFRPATDND 770
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 537 SSPPMQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVP 596
S P Q +A ++ L++A H L + +I VHLD K G+ G + P V YLVP
Sbjct: 926 SDSPFQFSALPFSDLLLEKALHINDLERNGRITVHLDAKQAGV-GTATCGPGVLPPYLVP 984
Query: 597 AVAYSFSIRLSPL 609
+F+ + P+
Sbjct: 985 LGKQTFTFTIYPV 997
>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OBA|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
Length = 1032
Score = 290 bits (741), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 190/529 (35%), Positives = 263/529 (49%), Gaps = 59/529 (11%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P W+AE P LY + L + G V+ VG RQV + VNG ++ RGVNRH
Sbjct: 303 PEHWTAENPTLYKYQLDLIGSDGSVIQSIKHHVGFRQVELKDGNITVNGKDILFRGVNRH 362
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
+HHPR G+ +V+DL+LMK+ NINAVRNSHYP HP+ Y+L D G ++IDEA++ET
Sbjct: 363 DHHPRFGRAVPLDFVVRDLILMKKFNINAVRNSHYPNHPKVYDLFDKLGFWVIDEADLET 422
Query: 122 HGFY--FSEHL----KHPTME--------------PSWAAAMMDRVIGMVERDKNHASII 161
HG F+ H ++P + P + A +DR +V RD NH SII
Sbjct: 423 HGVQEPFNRHTNLEAEYPDTKNKLYDVNAHYLSDNPEYEVAYLDRASQLVLRDVNHPSII 482
Query: 162 CWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMY-----MRVWDI 216
WSLGNEA +G NH A I+ DP+RL+HYEG + S DI MY M W
Sbjct: 483 IWSLGNEACYGRNHKAMYKLIKQLDPTRLVHYEGDLNAL-SADIFSFMYPTFEIMERWRK 541
Query: 217 VMIAKDPTETRPLILCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRE-- 274
++ +PLILCEY HAMGN G++ EY E QGGFIW+W + G+ E
Sbjct: 542 NHTDENGKFEKPLILCEYGHAMGNGPGSLKEYQELFYKEKFYQGGFIWEWANHGIEFEDV 601
Query: 275 -LADGTKH--WAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLKKGT 331
ADG H +AYGGDF + +D F ++GL + P P L E K V + + + + G+
Sbjct: 602 STADGKLHKAYAYGGDFKEEVHDGVFIMDGLCNSEHNPTPGLVEYKKVIEPVHIKIAHGS 661
Query: 332 LKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSC 391
+ I+N + F TT L F G + +P +KP + + + S Y
Sbjct: 662 VTITNKHDFITTDHLLFIDKDTG-------KTIDVPSLKPEES--VTIPSDTTY------ 706
Query: 392 SAEEIFLTVTAKLMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTI 451
V A L + +AGH I+ Q +LP K +P + + N G
Sbjct: 707 --------VVAVLKDDAGVLKAGHEIAWGQAELPLK---VPDFVTETAEKAAKINDGKRY 755
Query: 452 QLSHQNSWEIKFDIQTGAVESWKVEGVSVMKR--GIFPCFWRAPTDNDK 498
+ D G +ES KV+G + + G FWR PT+ND+
Sbjct: 756 VSVESSGLHFILDKLLGKIESLKVKGKEISSKFEGSSITFWRPPTNNDE 804
>pdb|1YQ2|A Chain A, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|B Chain B, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|C Chain C, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|D Chain D, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|E Chain E, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|F Chain F, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
Length = 1024
Score = 283 bits (725), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 262/524 (50%), Gaps = 59/524 (11%)
Query: 5 WSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHH 64
WSAE P LY V + S +G R V Q LVNG VV GVNRHE H
Sbjct: 286 WSAEVPRLYEASV------SSAAESISVRLGFRTVRIVGDQFLVNGRRVVFHGVNRHETH 339
Query: 65 PRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGF 124
P G+ E+ +DL LMK+ N+NA+R SHYP HPR +L D G ++I E ++ETHGF
Sbjct: 340 PDRGRVFDEAGAREDLALMKRFNVNAIRTSHYPPHPRLLDLADEMGFWVILECDLETHGF 399
Query: 125 YFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGWIRG 184
+++P+ P+W A++DR+ VERDKNH SI+ WSLGNE+G G N +A A W
Sbjct: 400 EAGGWVENPSDVPAWRDALVDRMERTVERDKNHPSIVMWSLGNESGTGSNLAAMAAWAHA 459
Query: 185 KDPSRLLHYEGGGSRTPSTDIVCPMYMRVWDIVMIAKDPT---------------ETRPL 229
+D SR +HYEG + TD+ MY + + I ++ + T+P
Sbjct: 460 RDSSRPVHYEGDYTGA-YTDVYSRMYSSIPETDSIGRNDSHALLLGCDSAESARQRTKPF 518
Query: 230 ILCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFG 289
ILCEY HAMGN G + +Y +D L GGF+W+W D G+ A+G + +AYGGDFG
Sbjct: 519 ILCEYVHAMGNGPGAMDQYEALVDKYPRLHGGFVWEWRDHGIRTRTAEGMEFFAYGGDFG 578
Query: 290 DTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKVSLK-----KGTLKISNTNFFETTQ 344
+ +D NF ++G++ D TP P L+E K + I++ L K TL ++N
Sbjct: 579 EVVHDSNFVMDGMVLSDSTPTPGLYEFKQIVSPIRLGLSLPAGGKPTLAVANLRHTADAS 638
Query: 345 GLEFSWVAHGDGYKLGFGILSL-----PLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLT 399
+ W DG G ++ PL + + I L + P + E +LT
Sbjct: 639 DVVLRWRVEHDGAVAASGEVAAEGSDGPL-RAGESATIALPAMP------AAPLGETWLT 691
Query: 400 VTAKLMNSTRWAEAGHVISTAQVQL--PSKRERLPHVIRTGDAIILQENLGNTIQLSHQN 457
V A L ++T WA AGH + Q+ L P+ R P D L +LG
Sbjct: 692 VEAVLRDATGWAPAGHPLGAVQLDLSAPAVPTRSPRPATPLDG-ALPVSLGPAT------ 744
Query: 458 SWEIKFDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGG 501
FD G + S + VS G WRAPTDND+G G
Sbjct: 745 -----FD--AGTLVSLAGQPVS----GPRLELWRAPTDNDRGAG 777
>pdb|1BHG|A Chain A, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|1BHG|B Chain B, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|3HN3|A Chain A, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|B Chain B, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|D Chain D, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|E Chain E, Human Beta-glucuronidase At 1.7 A Resolution
Length = 613
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 103/224 (45%), Gaps = 31/224 (13%)
Query: 2 PRLWSAEQPNLYTLVVIL--KHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVN 59
P L LY+L V L + + GPV D + VGIR V+ Q L+NG P GVN
Sbjct: 270 PYLMHERPAYLYSLEVQLTAQTSLGPVSDFYTLPVGIRTVAVTKSQFLINGKPFYFHGVN 329
Query: 60 RHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDE--- 116
+HE GK +VKD L++ NA R SHYP ++CD +G+ +IDE
Sbjct: 330 KHEDADIRGKGFDWPLLVKDFNLLRWLGANAFRTSHYPYAEEVMQMCDRYGIVVIDECPG 389
Query: 117 ANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHS 176
+ F+ + L H +M+ V V RDKNH +++ WS+ NE +H
Sbjct: 390 VGLALPQFFNNVSLHH-------HMQVMEEV---VRRDKNHPAVVMWSVANEPA---SHL 436
Query: 177 AAAGW--------IRGKDPSRLLHYEGGGSR-----TPSTDIVC 207
+AG+ + DPSR + + + P D++C
Sbjct: 437 ESAGYYLKMVIAHTKSLDPSRPVTFVSNSNYAADKGAPYVDVIC 480
>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides
Vulgatus
Length = 801
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 85/177 (48%), Gaps = 23/177 (12%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAP-KQLLVNGNPVVIRGVNR 60
P LWS + PN+YTL+ L + + +C VG RQ+ P L+NG + I+GV
Sbjct: 235 PLLWSPDSPNVYTLICQLTRDNKILDECR-LPVGFRQLEFNPVSGFLLNGKSLKIKGVCD 293
Query: 61 HEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEA--- 117
H VG + + L L+K NA+R SH P P +Y LCD G+ +++E
Sbjct: 294 HHTVGAVGAAVPDDLLHYRLKLLKDMGCNAIRTSHNPFSPAFYNLCDTMGIMVLNEGLDG 353
Query: 118 -----NIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA 169
+ +G YF E W M D ++RD+NH SII WS+GNE
Sbjct: 354 WNQPKAADDYGNYFDEW---------WQKDMTD----FIKRDRNHPSIIMWSIGNEV 397
>pdb|3K46|A Chain A, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K46|B Chain B, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K4D|A Chain A, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
pdb|3K4D|B Chain B, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
Length = 605
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 80/205 (39%), Gaps = 21/205 (10%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P LW + LY L V K S D VGIR V+ +Q L+N P G RH
Sbjct: 241 PHLWQPGEGYLYELCVTAK--SQTECDIYPLRVGIRSVAVKGEQFLINHKPFYFTGFGRH 298
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
E GK MV D LM N+ R SHYP + D G+ +IDE
Sbjct: 299 EDADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYAEEMLDWADEHGIVVIDET--AA 356
Query: 122 HGFYFS------------EHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA 169
GF S E + A + + ++ RDKNH S++ WS+ NE
Sbjct: 357 VGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIARDKNHPSVVMWSIANEP 416
Query: 170 GHGPN-----HSAAAGWIRGKDPSR 189
P + A R DP+R
Sbjct: 417 DTRPQGAREYFAPLAEATRKLDPTR 441
>pdb|3CMG|A Chain A, Crystal Structure Of Putative Beta-Galactosidase From
Bacteroides Fragilis
Length = 667
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 6/169 (3%)
Query: 2 PRLWSA-EQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAP-KQLLVNGNPVVIRGVN 59
PRLW+ E P +Y + + L H G +D + +G+R P K +NG + + GV
Sbjct: 231 PRLWNGCEDPFMYQVSISL-HKDGKQIDSVTQPLGLRYYHTDPDKGFFLNGKHLPLHGVC 289
Query: 60 RHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANI 119
RH+ VG +D+ LM++ +NA+R +HYPQ Y+L D G+ E
Sbjct: 290 RHQDRAEVGNALRPQHHEEDVALMREMGVNAIRLAHYPQATYMYDLMDKHGIVTWAEIPF 349
Query: 120 ETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNE 168
G Y + + S+ ++I ++ + NH SI W L NE
Sbjct: 350 VGPGGYADKGF---VDQASFRENGKQQLIELIRQHYNHPSICFWGLFNE 395
>pdb|3K4A|A Chain A, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
pdb|3K4A|B Chain B, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
Length = 605
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 78/205 (38%), Gaps = 21/205 (10%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P LW + LY L V K S D VGIR V+ +Q L+N P G RH
Sbjct: 241 PHLWQPGEGYLYELCVTAK--SQTECDIYPLRVGIRSVAVKGEQFLINHKPFYFTGFGRH 298
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
E GK V D L N+ R SHYP + D G+ +IDE
Sbjct: 299 EDADLRGKGFDNVLXVHDHALXDWIGANSYRTSHYPYAEEXLDWADEHGIVVIDET--AA 356
Query: 122 HGFYFS------------EHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA 169
GF S E + A + + ++ RDKNH S++ WS+ NE
Sbjct: 357 VGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIARDKNHPSVVXWSIANEP 416
Query: 170 GHGPN-----HSAAAGWIRGKDPSR 189
P + A R DP+R
Sbjct: 417 DTRPQGAREYFAPLAEATRKLDPTR 441
>pdb|3LPF|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPF|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPG|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
pdb|3LPG|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
Length = 605
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 78/205 (38%), Gaps = 21/205 (10%)
Query: 2 PRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRH 61
P LW + LY L V K S D VGIR V+ +Q L+N P G RH
Sbjct: 241 PHLWQPGEGYLYELCVTAK--SQTECDIYPLRVGIRSVAVKGEQFLINHKPFYFTGFGRH 298
Query: 62 EHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET 121
E GK V D L N+ R SHYP + D G+ +IDE
Sbjct: 299 EDADLRGKGFDNVLXVHDHALXDWIGANSYRTSHYPYAEEXLDWADEHGIVVIDET--AA 356
Query: 122 HGFYFS------------EHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA 169
GF S E + A + + ++ RDKNH S++ WS+ NE
Sbjct: 357 VGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIARDKNHPSVVXWSIANEP 416
Query: 170 GHGPN-----HSAAAGWIRGKDPSR 189
P + A R DP+R
Sbjct: 417 DTRPQGAREYFAPLAEATRKLDPTR 441
>pdb|3FN9|A Chain A, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|B Chain B, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|C Chain C, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|D Chain D, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
Length = 692
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 71/180 (39%), Gaps = 17/180 (9%)
Query: 2 PRLWSAEQ-PNLYTLVVILKHASGPVVDCESCLVGIRQVS-KAPKQLLVNGNPVVIRGVN 59
P LW + P LY +V L A G V+D +G+R+ A K +NG + GV
Sbjct: 245 PHLWQGRKDPYLYKVVCRLM-ADGKVIDEVVQPLGVRKYEIVAGKGFFLNGEKYSMYGVT 303
Query: 60 RHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEAN- 118
RH+ +G DL + VR +HY Q Y CD GL + E
Sbjct: 304 RHQDWWGLGSALKNEHHDFDLAAIMDVGATTVRFAHYQQSDYLYSRCDTLGLIIWAEIPC 363
Query: 119 IETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAA 178
+ Y +E+ + E ++ + NH SI W L NE ++AA
Sbjct: 364 VNRVTGYETENAQSQLRE-------------LIRQSFNHPSIYVWGLHNEVYQPHEYTAA 410
>pdb|2VZO|A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZO|B Chain B, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
Length = 1032
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 11/148 (7%)
Query: 28 DCESCLVGIRQV-----SKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVL 82
D G+R V S +Q VNG P++IRG + P + E+ L
Sbjct: 326 DAAKSKFGVRDVKATLNSSGGRQYSVNGKPLLIRG---GGYTPDLFLRWNETAAADKLKY 382
Query: 83 MKQNNINAVRNSHYPQHPRWYELCDLFGLYMID--EANIETHGFYFSEHLKHPTMEPSWA 140
+ +N VR + + ++++ D G+ + E + G E P +E +
Sbjct: 383 VLNLGLNTVRLEGHIEPDEFFDIADDLGVLTMPGWECCDKWEGQVNGEEKGEPWVESDYP 442
Query: 141 AAMMDRVIGMVERDKNHASIICWSLGNE 168
A + ER ++H S+I + +G+E
Sbjct: 443 IAKA-SMFSEAERLRDHPSVISFHIGSE 469
>pdb|2VZS|A Chain A, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZS|B Chain B, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2X05|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X05|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
Length = 1032
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 11/148 (7%)
Query: 28 DCESCLVGIRQV-----SKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVL 82
D G+R V S +Q VNG P++IRG + P + E+ L
Sbjct: 326 DAAKSKFGVRDVKATLNSSGGRQYSVNGKPLLIRG---GGYTPDLFLRWNETAAADKLKY 382
Query: 83 MKQNNINAVRNSHYPQHPRWYELCDLFGLYMID--EANIETHGFYFSEHLKHPTMEPSWA 140
+ +N VR + + ++++ D G+ + E + G E P +E +
Sbjct: 383 VLNLGLNTVRLEGHIEPDEFFDIADDLGVLTMPGWECCDKWEGQVNGEEKGEPWVESDYP 442
Query: 141 AAMMDRVIGMVERDKNHASIICWSLGNE 168
A + ER ++H S+I + +G++
Sbjct: 443 IAKA-SMFSEAERLRDHPSVISFHIGSD 469
>pdb|2VZT|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZT|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZV|A Chain A, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
pdb|2VZV|B Chain B, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
Length = 1032
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 11/148 (7%)
Query: 28 DCESCLVGIRQV-----SKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVL 82
D G+R V S +Q VNG P++IRG + P + E+ L
Sbjct: 326 DAAKSKFGVRDVKATLNSSGGRQYSVNGKPLLIRG---GGYTPDLFLRWNETAAADKLKY 382
Query: 83 MKQNNINAVRNSHYPQHPRWYELCDLFGLYMID--EANIETHGFYFSEHLKHPTMEPSWA 140
+ +N VR + + ++++ D G+ + E + G E P +E +
Sbjct: 383 VLNLGLNTVRLEGHIEPDEFFDIADDLGVLTMPGWECCDKWEGQVNGEEKGEPWVESDYP 442
Query: 141 AAMMDRVIGMVERDKNHASIICWSLGNE 168
A + ER ++H S+I + +G++
Sbjct: 443 IAKA-SMFSEAERLRDHPSVISFHIGSD 469
>pdb|2VZU|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
pdb|2VZU|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
Length = 1032
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 11/147 (7%)
Query: 28 DCESCLVGIRQV-----SKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVL 82
D G+R V S +Q VNG P++IRG + P + E+ L
Sbjct: 326 DAAKSKFGVRDVKATLNSSGGRQYSVNGKPLLIRG---GGYTPDLFLRWNETAAADKLKY 382
Query: 83 MKQNNINAVRNSHYPQHPRWYELCDLFGLYMID--EANIETHGFYFSEHLKHPTMEPSWA 140
+ +N VR + + ++++ D G+ + E + G E P +E +
Sbjct: 383 VLNLGLNTVRLEGHIEPDEFFDIADDLGVLTMPGWECCDKWEGQVNGEEKGEPWVESDYP 442
Query: 141 AAMMDRVIGMVERDKNHASIICWSLGN 167
A + ER ++H S+I + +G+
Sbjct: 443 IAKAS-MFSEAERLRDHPSVISFHIGS 468
>pdb|1G7K|A Chain A, Crystal Structure Of Dsred, A Red Fluorescent Protein From
Discosoma Sp. Red
pdb|1G7K|B Chain B, Crystal Structure Of Dsred, A Red Fluorescent Protein From
Discosoma Sp. Red
pdb|1G7K|C Chain C, Crystal Structure Of Dsred, A Red Fluorescent Protein From
Discosoma Sp. Red
pdb|1G7K|D Chain D, Crystal Structure Of Dsred, A Red Fluorescent Protein From
Discosoma Sp. Red
Length = 234
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 531 YASMYSSSPPMQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGL 579
+ S+Y + P+QL YY ++LD +HNE ++ E H+ L
Sbjct: 186 FKSIYXAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERTEGRHHLFL 234
>pdb|2H8Q|A Chain A, Crystal Structure Of A Redshifted Mutant (K83m) Of The Red
Fluorescent Protein Drfp583DSRED
pdb|2H8Q|B Chain B, Crystal Structure Of A Redshifted Mutant (K83m) Of The Red
Fluorescent Protein Drfp583DSRED
pdb|2H8Q|C Chain C, Crystal Structure Of A Redshifted Mutant (K83m) Of The Red
Fluorescent Protein Drfp583DSRED
pdb|2H8Q|D Chain D, Crystal Structure Of A Redshifted Mutant (K83m) Of The Red
Fluorescent Protein Drfp583DSRED
Length = 217
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 531 YASMYSSSPPMQLNASYYTTTELDRATHNE 560
+ S+Y + P+QL YY ++LD +HNE
Sbjct: 169 FKSIYMAKKPVQLPGYYYVDSKLDITSHNE 198
>pdb|1ZGP|A Chain A, Crystal Structure Of The Discosoma Red Fluorescent Protein
(Dsred) Variant K70m
pdb|1ZGP|B Chain B, Crystal Structure Of The Discosoma Red Fluorescent Protein
(Dsred) Variant K70m
pdb|1ZGP|C Chain C, Crystal Structure Of The Discosoma Red Fluorescent Protein
(Dsred) Variant K70m
pdb|1ZGP|D Chain D, Crystal Structure Of The Discosoma Red Fluorescent Protein
(Dsred) Variant K70m
Length = 223
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 531 YASMYSSSPPMQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGL 579
+ S+Y + P+QL YY ++LD +HNE ++ E H+ L
Sbjct: 175 FKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERTEGRHHLFL 223
>pdb|2VAE|A Chain A, Fast Maturing Red Fluorescent Protein, Dsred.T4
pdb|2VAE|B Chain B, Fast Maturing Red Fluorescent Protein, Dsred.T4
pdb|2VAE|C Chain C, Fast Maturing Red Fluorescent Protein, Dsred.T4
pdb|2VAE|D Chain D, Fast Maturing Red Fluorescent Protein, Dsred.T4
pdb|2VAE|E Chain E, Fast Maturing Red Fluorescent Protein, Dsred.T4
pdb|2VAE|F Chain F, Fast Maturing Red Fluorescent Protein, Dsred.T4
pdb|2VAE|G Chain G, Fast Maturing Red Fluorescent Protein, Dsred.T4
pdb|2VAE|H Chain H, Fast Maturing Red Fluorescent Protein, Dsred.T4
Length = 223
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 531 YASMYSSSPPMQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGL 579
+ S+Y + P+QL YY ++LD +HNE ++ E H+ L
Sbjct: 175 FKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERAEGRHHLFL 223
>pdb|1GGX|A Chain A, Red Fluorescent Protein (Fp583 Or Dsred(Clontech)) From
Discosoma Sp.
pdb|1GGX|B Chain B, Red Fluorescent Protein (Fp583 Or Dsred(Clontech)) From
Discosoma Sp.
pdb|1GGX|C Chain C, Red Fluorescent Protein (Fp583 Or Dsred(Clontech)) From
Discosoma Sp.
pdb|1GGX|D Chain D, Red Fluorescent Protein (Fp583 Or Dsred(Clontech)) From
Discosoma Sp.
pdb|1ZGO|A Chain A, High Resolution Crystal Structure Of The Discosoma Red
Fluorescent Protein (Dsred)
pdb|1ZGO|B Chain B, High Resolution Crystal Structure Of The Discosoma Red
Fluorescent Protein (Dsred)
pdb|1ZGO|C Chain C, High Resolution Crystal Structure Of The Discosoma Red
Fluorescent Protein (Dsred)
pdb|1ZGO|D Chain D, High Resolution Crystal Structure Of The Discosoma Red
Fluorescent Protein (Dsred)
pdb|1ZGQ|A Chain A, Crystal Structure Of The Discosoma Red Fluorescent Protein
(Dsred) Variant Q66m
pdb|1ZGQ|B Chain B, Crystal Structure Of The Discosoma Red Fluorescent Protein
(Dsred) Variant Q66m
pdb|1ZGQ|C Chain C, Crystal Structure Of The Discosoma Red Fluorescent Protein
(Dsred) Variant Q66m
pdb|1ZGQ|D Chain D, Crystal Structure Of The Discosoma Red Fluorescent Protein
(Dsred) Variant Q66m
pdb|1ZGQ|E Chain E, Crystal Structure Of The Discosoma Red Fluorescent Protein
(Dsred) Variant Q66m
pdb|1ZGQ|F Chain F, Crystal Structure Of The Discosoma Red Fluorescent Protein
(Dsred) Variant Q66m
pdb|1ZGQ|G Chain G, Crystal Structure Of The Discosoma Red Fluorescent Protein
(Dsred) Variant Q66m
pdb|1ZGQ|H Chain H, Crystal Structure Of The Discosoma Red Fluorescent Protein
(Dsred) Variant Q66m
Length = 223
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 531 YASMYSSSPPMQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGL 579
+ S+Y + P+QL YY ++LD +HNE ++ E H+ L
Sbjct: 175 FKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERTEGRHHLFL 223
>pdb|2VAD|A Chain A, Monomeric Red Fluorescent Protein, Dsred.m1
Length = 223
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 531 YASMYSSSPPMQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMG 578
+ ++Y + P+QL ++Y ++LD HNE ++ E H + +H G
Sbjct: 175 FKTVYKAKKPVQLPGNHYVDSKLDITNHNEDYTVVEQYE-HAEARHSG 221
>pdb|4FMB|A Chain A, Vira-Rab1 Complex Structure
pdb|4FMB|C Chain C, Vira-Rab1 Complex Structure
pdb|4FMB|E Chain E, Vira-Rab1 Complex Structure
Length = 361
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 78 KDLVLMKQNNINAVRNSHYPQHPRWYELCD-LFGLYMIDEANIE--THGFYFSEHLKHPT 134
K+L ++ N +N + NS++PQ ++ LF D A I T F+ S H+ +
Sbjct: 190 KELQMLSYNQVNKIINSNFPQQDLCFQTEKLLFTSLFQDPAFISALTSAFWQSLHITSSS 249
Query: 135 MEPSWAAAMMDRV 147
+E +A M + +
Sbjct: 250 VEHIYAQIMSENI 262
>pdb|3EB8|A Chain A, Vira
pdb|3EB8|B Chain B, Vira
Length = 358
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 78 KDLVLMKQNNINAVRNSHYPQHPRWYELCD-LFGLYMIDEANIE--THGFYFSEHLKHPT 134
K+L ++ N +N + NS++PQ ++ LF D A I T F+ S H+ +
Sbjct: 187 KELQMLSYNQVNKIINSNFPQQDLCFQTEKLLFTSLFQDPAFISALTSAFWQSLHITSSS 246
Query: 135 MEPSWAAAMMDRV 147
+E +A M + +
Sbjct: 247 VEHIYAQIMSENI 259
>pdb|2V4E|B Chain B, A Non-Cytotoxic Dsred Variant For Whole-Cell Labeling
Length = 218
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 531 YASMYSSSPPMQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGL 579
+ S+Y + P++L YY ++LD +HNE ++ E H+ L
Sbjct: 170 FKSIYMAKKPVKLPGYYYVDSKLDITSHNEDYTVVEQYERTEARHHLFL 218
>pdb|2V4E|C Chain C, A Non-Cytotoxic Dsred Variant For Whole-Cell Labeling
pdb|2V4E|D Chain D, A Non-Cytotoxic Dsred Variant For Whole-Cell Labeling
pdb|2V4E|E Chain E, A Non-Cytotoxic Dsred Variant For Whole-Cell Labeling
pdb|2V4E|F Chain F, A Non-Cytotoxic Dsred Variant For Whole-Cell Labeling
pdb|2V4E|G Chain G, A Non-Cytotoxic Dsred Variant For Whole-Cell Labeling
pdb|2V4E|H Chain H, A Non-Cytotoxic Dsred Variant For Whole-Cell Labeling
Length = 218
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 531 YASMYSSSPPMQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGL 579
+ S+Y + P++L YY ++LD +HNE ++ E H+ L
Sbjct: 170 FKSIYMAKKPVKLPGYYYVDSKLDITSHNEDYTVVEQYERTEARHHLFL 218
>pdb|2V4E|A Chain A, A Non-Cytotoxic Dsred Variant For Whole-Cell Labeling
Length = 218
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 531 YASMYSSSPPMQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGL 579
+ S+Y + P++L YY ++LD +HNE ++ E H+ L
Sbjct: 170 FKSIYMAKKPVKLPGYYYVDSKLDITSHNEDYTVVEQYERTEARHHLFL 218
>pdb|3NED|A Chain A, Mrouge
Length = 231
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 533 SMYSSSPPMQLNASYYTTTELDRATHNE 560
+ Y + P+QL +Y T T+LD +HNE
Sbjct: 179 TTYKAKKPVQLPGAYNTNTKLDITSHNE 206
>pdb|3NF0|A Chain A, Mplum-Ttn
Length = 232
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 533 SMYSSSPPMQLNASYYTTTELDRATHNE 560
+ Y + P+QL +Y T T+LD +HNE
Sbjct: 186 TTYMAKKPVQLPGAYKTDTKLDITSHNE 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,666,594
Number of Sequences: 62578
Number of extensions: 908552
Number of successful extensions: 2182
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2005
Number of HSP's gapped (non-prelim): 76
length of query: 625
length of database: 14,973,337
effective HSP length: 105
effective length of query: 520
effective length of database: 8,402,647
effective search space: 4369376440
effective search space used: 4369376440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)